Query 001584
Match_columns 1049
No_of_seqs 346 out of 3178
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 04:26:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2171 Karyopherin (importin) 100.0 1E-122 2E-127 1018.5 103.3 1034 2-1047 3-1074(1075)
2 KOG2023 Nuclear transport rece 100.0 1.3E-73 2.8E-78 585.5 54.8 806 3-1047 13-884 (885)
3 KOG1241 Karyopherin (importin) 100.0 4.2E-58 9.2E-63 480.5 62.5 781 4-894 2-854 (859)
4 COG5215 KAP95 Karyopherin (imp 100.0 7.2E-47 1.6E-51 381.9 58.9 706 3-761 4-820 (858)
5 KOG2171 Karyopherin (importin) 100.0 5E-37 1.1E-41 340.9 78.7 852 13-956 47-1021(1075)
6 KOG2023 Nuclear transport rece 100.0 1.3E-36 2.8E-41 313.6 48.8 723 203-1019 11-816 (885)
7 KOG1241 Karyopherin (importin) 100.0 2.8E-34 6.1E-39 302.1 62.6 740 217-1025 12-815 (859)
8 KOG1824 TATA-binding protein-i 100.0 2.8E-32 6E-37 292.4 75.5 962 7-1041 9-1212(1233)
9 KOG1991 Nuclear transport rece 100.0 2.4E-30 5.2E-35 281.7 69.2 667 1-692 2-794 (1010)
10 KOG1824 TATA-binding protein-i 100.0 2.3E-27 5E-32 254.9 67.4 896 47-1031 16-1046(1233)
11 KOG1992 Nuclear export recepto 100.0 2.1E-27 4.6E-32 252.4 55.4 714 2-774 4-817 (960)
12 COG5215 KAP95 Karyopherin (imp 100.0 8.2E-26 1.8E-30 229.9 60.2 656 314-1025 109-813 (858)
13 KOG1993 Nuclear transport rece 100.0 2E-23 4.3E-28 221.3 56.5 586 5-597 2-709 (978)
14 KOG2274 Predicted importin 9 [ 100.0 3.6E-22 7.8E-27 215.4 60.3 579 2-595 3-667 (1005)
15 COG5656 SXM1 Importin, protein 100.0 2.6E-20 5.6E-25 196.3 70.3 496 1-507 1-586 (970)
16 KOG0213 Splicing factor 3b, su 99.9 3.9E-22 8.4E-27 209.2 53.2 745 160-1034 365-1122(1172)
17 KOG0213 Splicing factor 3b, su 99.9 6.7E-20 1.5E-24 192.6 57.3 672 5-755 365-1112(1172)
18 COG5181 HSH155 U2 snRNP splice 99.9 1E-19 2.2E-24 187.4 42.0 733 172-1034 180-927 (975)
19 PLN03200 cellulose synthase-in 99.9 4.2E-17 9.2E-22 198.6 68.8 813 3-918 13-934 (2102)
20 KOG2021 Nuclear mRNA export fa 99.9 3.2E-17 6.9E-22 173.5 56.9 582 1-596 1-747 (980)
21 COG5181 HSH155 U2 snRNP splice 99.9 4.9E-19 1.1E-23 182.5 40.4 669 5-759 170-921 (975)
22 PLN03200 cellulose synthase-in 99.9 1.4E-17 3E-22 202.8 54.2 791 119-1031 14-870 (2102)
23 KOG0915 Uncharacterized conser 99.9 2.4E-16 5.2E-21 179.9 54.7 556 377-997 817-1404(1702)
24 KOG2022 Nuclear transport rece 99.9 3E-14 6.5E-19 154.7 66.4 529 3-535 7-672 (982)
25 KOG1991 Nuclear transport rece 99.8 4E-13 8.6E-18 148.6 73.0 705 38-888 4-793 (1010)
26 KOG0915 Uncharacterized conser 99.8 9.1E-17 2E-21 183.3 44.0 619 158-898 817-1472(1702)
27 COG5101 CRM1 Importin beta-rel 99.8 1.1E-12 2.4E-17 136.7 60.3 473 5-488 16-647 (1053)
28 KOG1242 Protein containing ada 99.8 2.1E-15 4.5E-20 159.5 38.4 527 90-692 28-558 (569)
29 COG5657 CSE1 CAS/CSE protein i 99.8 5.1E-13 1.1E-17 146.3 55.3 523 7-533 8-609 (947)
30 KOG1242 Protein containing ada 99.7 2.5E-14 5.5E-19 151.4 39.2 521 218-846 29-556 (569)
31 KOG0212 Uncharacterized conser 99.7 4.8E-13 1E-17 138.1 35.0 382 314-752 15-408 (675)
32 KOG1992 Nuclear export recepto 99.7 2.2E-10 4.7E-15 124.3 56.3 669 254-1024 44-796 (960)
33 KOG1248 Uncharacterized conser 99.7 5.6E-09 1.2E-13 118.9 68.9 783 139-1045 72-920 (1176)
34 KOG0212 Uncharacterized conser 99.6 3.3E-13 7E-18 139.3 29.8 410 164-596 5-424 (675)
35 PF01602 Adaptin_N: Adaptin N 99.6 1.5E-12 3.3E-17 151.2 39.4 507 4-573 8-522 (526)
36 KOG1248 Uncharacterized conser 99.6 8.9E-09 1.9E-13 117.3 66.8 770 14-876 106-921 (1176)
37 PF01602 Adaptin_N: Adaptin N 99.6 1.8E-11 4E-16 142.2 44.4 512 77-696 3-522 (526)
38 KOG1943 Beta-tubulin folding c 99.6 2.5E-09 5.5E-14 120.0 55.0 471 73-578 336-840 (1133)
39 PTZ00429 beta-adaptin; Provisi 99.6 5.9E-10 1.3E-14 127.7 50.7 466 5-531 70-544 (746)
40 KOG0166 Karyopherin (importin) 99.6 4.2E-12 9.1E-17 134.2 30.6 352 47-451 77-439 (514)
41 KOG1993 Nuclear transport rece 99.6 3.9E-08 8.4E-13 106.7 59.5 501 434-1047 412-976 (978)
42 PTZ00429 beta-adaptin; Provisi 99.6 1.4E-09 3.1E-14 124.6 52.2 504 4-573 33-544 (746)
43 KOG0166 Karyopherin (importin) 99.6 1.8E-12 3.8E-17 136.9 26.2 360 120-493 68-440 (514)
44 KOG2081 Nuclear transport regu 99.5 7.5E-11 1.6E-15 123.4 36.2 454 21-492 2-539 (559)
45 KOG2274 Predicted importin 9 [ 99.5 4E-08 8.6E-13 108.4 52.5 652 216-960 14-762 (1005)
46 KOG0211 Protein phosphatase 2A 99.4 1.6E-09 3.4E-14 122.5 39.2 562 92-748 95-662 (759)
47 PF10508 Proteasom_PSMB: Prote 99.4 2.8E-09 6E-14 119.7 38.3 392 83-490 43-463 (503)
48 KOG1943 Beta-tubulin folding c 99.3 4.9E-06 1.1E-10 94.4 62.4 427 314-815 356-840 (1133)
49 KOG0211 Protein phosphatase 2A 99.3 7.5E-09 1.6E-13 117.1 37.0 526 14-576 131-665 (759)
50 COG5064 SRP1 Karyopherin (impo 99.3 7.2E-10 1.6E-14 107.5 22.0 350 47-449 82-444 (526)
51 COG5064 SRP1 Karyopherin (impo 99.2 9.7E-11 2.1E-15 113.4 12.3 359 119-489 72-443 (526)
52 PF10508 Proteasom_PSMB: Prote 99.2 4.8E-08 1E-12 109.8 35.5 312 122-451 42-369 (503)
53 KOG1060 Vesicle coat complex A 99.2 8.5E-08 1.8E-12 104.0 33.9 435 5-493 73-537 (968)
54 PRK13800 putative oxidoreducta 99.2 5.1E-09 1.1E-13 126.8 27.9 273 81-445 624-896 (897)
55 KOG1060 Vesicle coat complex A 99.2 4.5E-07 9.7E-12 98.6 38.6 463 83-600 40-554 (968)
56 PRK09687 putative lyase; Provi 99.2 8.9E-09 1.9E-13 105.2 24.9 253 209-529 26-278 (280)
57 PRK13800 putative oxidoreducta 99.2 8.1E-09 1.7E-13 125.1 28.6 274 120-486 623-896 (897)
58 PRK09687 putative lyase; Provi 99.2 1.3E-08 2.7E-13 104.2 25.2 253 161-485 25-278 (280)
59 PF12755 Vac14_Fab1_bd: Vacuol 99.1 7.2E-10 1.6E-14 91.1 11.6 94 353-447 2-95 (97)
60 PF12460 MMS19_C: RNAPII trans 99.0 4.1E-07 8.8E-12 100.3 32.5 378 121-508 2-413 (415)
61 KOG0392 SNF2 family DNA-depend 99.0 6.5E-05 1.4E-09 86.7 47.5 143 47-191 88-239 (1549)
62 PF08506 Cse1: Cse1; InterPro 99.0 1.3E-07 2.9E-12 100.1 23.8 218 222-443 112-370 (370)
63 PF12460 MMS19_C: RNAPII trans 99.0 9.9E-07 2.2E-11 97.3 31.7 366 221-595 17-414 (415)
64 KOG1967 DNA repair/transcripti 99.0 0.00019 4.1E-09 80.6 54.8 232 643-897 789-1026(1030)
65 KOG1062 Vesicle coat complex A 98.9 4.2E-05 9.1E-10 84.3 41.8 502 16-569 47-575 (866)
66 KOG1020 Sister chromatid cohes 98.9 0.00037 8.1E-09 82.5 58.8 166 395-574 794-959 (1692)
67 KOG4224 Armadillo repeat prote 98.9 4.1E-08 8.9E-13 96.5 17.0 380 130-535 59-448 (550)
68 PF12348 CLASP_N: CLASP N term 98.9 6E-08 1.3E-12 98.2 18.7 191 339-537 9-210 (228)
69 KOG1062 Vesicle coat complex A 98.9 4.2E-06 9E-11 91.9 32.5 421 117-580 102-549 (866)
70 KOG2020 Nuclear transport rece 98.9 4.2E-05 9E-10 90.1 42.4 143 4-148 11-163 (1041)
71 KOG1020 Sister chromatid cohes 98.9 0.00075 1.6E-08 80.1 56.6 160 319-486 797-957 (1692)
72 PF12348 CLASP_N: CLASP N term 98.8 1.6E-07 3.4E-12 95.1 17.3 188 310-502 18-219 (228)
73 KOG4224 Armadillo repeat prote 98.8 1E-06 2.2E-11 87.0 21.6 443 19-490 24-494 (550)
74 PF03810 IBN_N: Importin-beta 98.8 2.8E-08 6.1E-13 80.1 8.5 66 23-88 1-76 (77)
75 COG5240 SEC21 Vesicle coat com 98.8 9.1E-05 2E-09 78.1 35.2 256 290-574 262-554 (898)
76 KOG1061 Vesicle coat complex A 98.7 1.7E-05 3.6E-10 87.6 30.5 447 6-488 52-527 (734)
77 PF12755 Vac14_Fab1_bd: Vacuol 98.7 8.5E-08 1.9E-12 79.0 9.2 87 394-480 2-88 (97)
78 KOG1240 Protein kinase contain 98.7 4.4E-06 9.5E-11 95.6 25.0 300 160-492 423-728 (1431)
79 KOG1059 Vesicle coat complex A 98.7 0.00078 1.7E-08 73.6 40.2 251 158-448 143-401 (877)
80 PF03378 CAS_CSE1: CAS/CSE pro 98.7 1.4E-05 3E-10 86.9 27.7 380 579-1045 18-435 (435)
81 KOG0891 DNA-dependent protein 98.7 0.00065 1.4E-08 87.0 45.3 569 314-935 108-760 (2341)
82 KOG1240 Protein kinase contain 98.7 2.4E-06 5.1E-11 97.7 21.2 300 119-451 423-728 (1431)
83 KOG4535 HEAT and armadillo rep 98.7 4.1E-05 9E-10 78.8 28.0 508 172-746 8-599 (728)
84 KOG2032 Uncharacterized conser 98.6 2.1E-05 4.4E-10 81.9 24.9 154 346-499 226-381 (533)
85 KOG1059 Vesicle coat complex A 98.6 0.00044 9.5E-09 75.5 35.0 260 115-407 141-401 (877)
86 KOG1061 Vesicle coat complex A 98.6 0.00025 5.5E-09 78.6 33.8 504 7-574 17-527 (734)
87 KOG4535 HEAT and armadillo rep 98.6 0.00071 1.5E-08 70.1 34.5 458 92-597 9-583 (728)
88 COG5656 SXM1 Importin, protein 98.6 0.0029 6.2E-08 69.6 64.5 485 47-597 14-552 (970)
89 COG5240 SEC21 Vesicle coat com 98.5 0.00043 9.4E-09 73.3 31.0 289 157-487 262-553 (898)
90 PF03378 CAS_CSE1: CAS/CSE pro 98.4 0.00018 4E-09 78.3 27.9 250 452-753 18-275 (435)
91 KOG2021 Nuclear mRNA export fa 98.4 0.0059 1.3E-07 67.3 51.4 533 376-985 187-771 (980)
92 cd00020 ARM Armadillo/beta-cat 98.4 2.1E-06 4.5E-11 77.0 10.8 110 338-447 8-119 (120)
93 PF13513 HEAT_EZ: HEAT-like re 98.4 6.1E-07 1.3E-11 66.3 5.7 55 351-405 1-55 (55)
94 KOG0414 Chromosome condensatio 98.4 0.012 2.5E-07 68.8 67.5 167 797-980 937-1104(1251)
95 KOG1058 Vesicle coat complex C 98.3 0.00085 1.8E-08 73.7 29.6 311 127-492 108-428 (948)
96 KOG0414 Chromosome condensatio 98.3 0.016 3.4E-07 67.8 54.9 136 314-451 290-431 (1251)
97 KOG1967 DNA repair/transcripti 98.3 0.013 2.9E-07 66.4 58.0 129 798-933 886-1019(1030)
98 PF05804 KAP: Kinesin-associat 98.3 0.0036 7.8E-08 71.9 35.4 375 133-578 264-652 (708)
99 KOG2259 Uncharacterized conser 98.3 0.0012 2.6E-08 71.5 28.8 287 159-494 198-516 (823)
100 KOG2956 CLIP-associating prote 98.3 0.00016 3.5E-09 74.9 20.8 191 218-421 299-492 (516)
101 KOG4413 26S proteasome regulat 98.2 0.0037 8.1E-08 61.6 28.4 341 132-489 54-439 (524)
102 PLN03076 ARF guanine nucleotid 98.2 0.019 4.2E-07 73.0 42.0 295 47-348 1148-1513(1780)
103 KOG2956 CLIP-associating prote 98.2 0.00013 2.9E-09 75.5 19.0 205 382-596 290-499 (516)
104 KOG0891 DNA-dependent protein 98.2 0.067 1.4E-06 69.5 56.2 186 5-192 7-207 (2341)
105 COG5096 Vesicle coat complex, 98.2 0.026 5.7E-07 64.6 39.4 152 2-166 54-211 (757)
106 KOG1820 Microtubule-associated 98.2 5.4E-05 1.2E-09 87.3 17.6 204 332-544 248-454 (815)
107 KOG1077 Vesicle coat complex A 98.2 0.0093 2E-07 65.3 32.7 318 122-466 115-451 (938)
108 KOG1058 Vesicle coat complex C 98.2 0.013 2.7E-07 64.9 33.3 403 114-578 52-466 (948)
109 KOG1077 Vesicle coat complex A 98.1 0.023 4.9E-07 62.5 41.2 488 344-973 81-582 (938)
110 PF13513 HEAT_EZ: HEAT-like re 98.1 7E-06 1.5E-10 60.6 5.6 55 392-446 1-55 (55)
111 cd00020 ARM Armadillo/beta-cat 98.1 1.4E-05 3E-10 71.6 8.7 110 379-488 8-119 (120)
112 KOG0168 Putative ubiquitin fus 98.0 0.0014 3E-08 73.1 24.1 438 120-592 169-648 (1051)
113 KOG4524 Uncharacterized conser 98.0 0.051 1.1E-06 62.5 54.0 95 821-916 800-898 (1014)
114 KOG4653 Uncharacterized conser 98.0 0.0011 2.4E-08 74.1 23.1 217 262-489 740-964 (982)
115 KOG4653 Uncharacterized conser 98.0 0.00026 5.7E-09 78.8 17.9 204 379-589 728-932 (982)
116 PF04826 Arm_2: Armadillo-like 98.0 0.00035 7.5E-09 69.9 17.5 193 337-538 12-210 (254)
117 KOG0168 Putative ubiquitin fus 98.0 0.014 3E-07 65.6 30.6 440 4-468 168-651 (1051)
118 PF05804 KAP: Kinesin-associat 98.0 0.0057 1.2E-07 70.4 28.7 367 91-490 262-650 (708)
119 KOG1078 Vesicle coat complex C 97.9 0.062 1.3E-06 60.2 35.6 103 69-182 55-157 (865)
120 KOG2032 Uncharacterized conser 97.9 0.012 2.7E-07 62.0 27.4 269 155-448 254-531 (533)
121 PF04510 DUF577: Family of unk 97.9 0.00053 1.1E-08 61.5 15.1 154 78-235 3-164 (174)
122 PF08389 Xpo1: Exportin 1-like 97.9 6.4E-05 1.4E-09 70.2 10.1 128 93-230 2-148 (148)
123 KOG1293 Proteins containing ar 97.9 0.033 7.1E-07 61.1 31.0 141 349-489 389-533 (678)
124 KOG1078 Vesicle coat complex C 97.9 0.077 1.7E-06 59.5 35.2 290 155-490 241-533 (865)
125 PF12717 Cnd1: non-SMC mitotic 97.9 0.00044 9.6E-09 66.1 15.0 146 840-998 3-158 (178)
126 KOG2259 Uncharacterized conser 97.8 0.013 2.8E-07 63.9 26.1 210 252-486 203-472 (823)
127 PF05004 IFRD: Interferon-rela 97.8 0.0043 9.2E-08 64.8 22.3 188 346-536 52-260 (309)
128 PF11864 DUF3384: Domain of un 97.8 0.11 2.3E-06 58.6 34.9 295 94-411 5-335 (464)
129 KOG4413 26S proteasome regulat 97.8 0.01 2.2E-07 58.7 22.5 295 96-409 60-379 (524)
130 KOG1293 Proteins containing ar 97.8 0.11 2.3E-06 57.3 34.5 465 48-531 21-531 (678)
131 PF13646 HEAT_2: HEAT repeats; 97.8 0.00012 2.6E-09 60.9 8.0 85 340-444 2-88 (88)
132 PF12717 Cnd1: non-SMC mitotic 97.7 0.0004 8.8E-09 66.3 12.4 111 350-467 1-112 (178)
133 cd00256 VATPase_H VATPase_H, r 97.7 0.015 3.3E-07 62.6 25.1 351 34-407 52-425 (429)
134 PLN03076 ARF guanine nucleotid 97.7 0.034 7.5E-07 70.8 30.8 348 69-431 1080-1514(1780)
135 KOG1822 Uncharacterized conser 97.7 0.33 7.2E-06 60.3 66.3 221 733-978 888-1127(2067)
136 KOG0889 Histone acetyltransfer 97.7 0.53 1.2E-05 62.4 46.6 96 156-258 46-149 (3550)
137 PF08167 RIX1: rRNA processing 97.6 0.0025 5.3E-08 59.7 15.7 135 374-510 21-164 (165)
138 PF05004 IFRD: Interferon-rela 97.6 0.007 1.5E-07 63.2 20.5 199 380-579 45-261 (309)
139 PF14500 MMS19_N: Dos2-interac 97.6 0.0079 1.7E-07 60.9 20.0 237 342-592 4-255 (262)
140 PF10274 ParcG: Parkin co-regu 97.6 0.00058 1.3E-08 63.0 10.5 122 417-538 36-169 (183)
141 PF05918 API5: Apoptosis inhib 97.6 0.079 1.7E-06 58.8 28.5 219 24-256 9-228 (556)
142 KOG2759 Vacuolar H+-ATPase V1 97.5 0.036 7.9E-07 57.5 23.2 354 35-407 65-438 (442)
143 KOG0413 Uncharacterized conser 97.5 0.29 6.3E-06 56.2 40.8 109 377-488 575-684 (1529)
144 PF08167 RIX1: rRNA processing 97.5 0.0035 7.6E-08 58.7 15.0 136 332-469 20-164 (165)
145 COG5096 Vesicle coat complex, 97.5 0.34 7.3E-06 55.9 41.3 164 14-190 30-196 (757)
146 KOG0413 Uncharacterized conser 97.5 0.35 7.5E-06 55.6 43.0 106 158-276 575-683 (1529)
147 PF14500 MMS19_N: Dos2-interac 97.5 0.085 1.8E-06 53.5 24.9 240 164-424 4-255 (262)
148 PF10274 ParcG: Parkin co-regu 97.4 0.0015 3.2E-08 60.4 10.6 94 822-916 36-133 (183)
149 PF08506 Cse1: Cse1; InterPro 97.4 0.065 1.4E-06 57.5 24.5 226 434-732 111-358 (370)
150 PF02985 HEAT: HEAT repeat; I 97.4 0.00024 5.3E-09 44.5 3.8 30 379-408 1-30 (31)
151 PF13251 DUF4042: Domain of un 97.4 0.0018 3.9E-08 60.6 11.1 140 352-491 1-176 (182)
152 KOG2062 26S proteasome regulat 97.4 0.12 2.5E-06 57.6 25.6 127 332-475 553-680 (929)
153 KOG4500 Rho/Rac GTPase guanine 97.4 0.075 1.6E-06 55.1 22.6 112 336-449 314-432 (604)
154 KOG2933 Uncharacterized conser 97.4 0.0053 1.2E-07 60.7 14.1 143 343-491 94-236 (334)
155 KOG1820 Microtubule-associated 97.3 0.01 2.2E-07 69.1 18.2 179 310-494 264-448 (815)
156 PF04826 Arm_2: Armadillo-like 97.3 0.0083 1.8E-07 60.2 15.4 186 81-278 15-205 (254)
157 PF05536 Neurochondrin: Neuroc 97.3 0.52 1.1E-05 53.8 31.2 241 33-281 3-264 (543)
158 PF13646 HEAT_2: HEAT repeats; 97.3 0.0027 5.8E-08 52.7 10.0 87 81-185 2-88 (88)
159 KOG2022 Nuclear transport rece 97.2 0.7 1.5E-05 53.0 70.9 327 645-1032 564-928 (982)
160 cd00256 VATPase_H VATPase_H, r 97.2 0.25 5.3E-06 53.6 25.7 303 126-447 109-424 (429)
161 KOG2025 Chromosome condensatio 97.2 0.6 1.3E-05 52.1 35.4 111 71-186 78-190 (892)
162 COG1413 FOG: HEAT repeat [Ener 97.2 0.11 2.3E-06 56.4 23.9 253 117-448 42-304 (335)
163 PF13001 Ecm29: Proteasome sta 97.2 0.54 1.2E-05 53.4 29.9 382 8-408 28-489 (501)
164 PF02985 HEAT: HEAT repeat; I 97.2 0.00068 1.5E-08 42.5 3.9 30 867-896 1-30 (31)
165 KOG1517 Guanine nucleotide bin 97.1 0.079 1.7E-06 61.2 21.9 213 266-491 487-734 (1387)
166 COG1413 FOG: HEAT repeat [Ener 97.1 0.024 5.2E-07 61.4 17.5 186 337-574 43-241 (335)
167 KOG2025 Chromosome condensatio 97.1 0.77 1.7E-05 51.3 39.5 216 240-486 37-256 (892)
168 PF11865 DUF3385: Domain of un 97.0 0.0044 9.5E-08 57.4 9.7 150 718-896 8-158 (160)
169 PF05918 API5: Apoptosis inhib 97.0 0.11 2.3E-06 57.9 21.5 273 218-510 34-319 (556)
170 KOG0392 SNF2 family DNA-depend 97.0 1.4 2.9E-05 52.9 47.0 180 114-305 71-262 (1549)
171 TIGR02270 conserved hypothetic 97.0 0.21 4.6E-06 54.3 23.3 242 118-448 54-296 (410)
172 PF12719 Cnd3: Nuclear condens 97.0 0.096 2.1E-06 55.1 20.3 166 341-513 31-209 (298)
173 PF11864 DUF3384: Domain of un 96.9 1.1 2.5E-05 50.4 36.9 309 133-467 5-351 (464)
174 TIGR02270 conserved hypothetic 96.9 0.57 1.2E-05 51.1 25.4 243 78-407 54-296 (410)
175 KOG2160 Armadillo/beta-catenin 96.8 0.072 1.6E-06 54.6 16.8 146 347-492 93-243 (342)
176 KOG2933 Uncharacterized conser 96.8 0.028 6E-07 55.8 13.1 150 378-536 88-237 (334)
177 PF13001 Ecm29: Proteasome sta 96.8 1.5 3.3E-05 49.8 30.2 175 314-494 252-448 (501)
178 PF11865 DUF3385: Domain of un 96.7 0.021 4.5E-07 53.0 11.1 149 334-490 7-158 (160)
179 KOG4524 Uncharacterized conser 96.6 2.1 4.5E-05 50.1 44.3 114 397-512 567-685 (1014)
180 PF13251 DUF4042: Domain of un 96.6 0.025 5.4E-07 53.1 11.1 143 94-239 1-178 (182)
181 PF12054 DUF3535: Domain of un 96.6 0.66 1.4E-05 51.4 23.9 306 351-672 101-439 (441)
182 KOG2062 26S proteasome regulat 96.6 0.039 8.4E-07 61.2 13.5 158 338-514 520-678 (929)
183 KOG1851 Uncharacterized conser 96.6 3.3 7.2E-05 51.2 32.6 170 316-489 1504-1678(1710)
184 PF12231 Rif1_N: Rap1-interact 96.5 1.6 3.5E-05 47.5 31.2 273 172-492 5-306 (372)
185 PF12719 Cnd3: Nuclear condens 96.5 0.13 2.7E-06 54.2 17.3 127 360-490 6-144 (298)
186 PF10521 DUF2454: Protein of u 96.5 0.23 4.9E-06 51.6 18.8 164 350-513 88-277 (282)
187 KOG1949 Uncharacterized conser 96.5 0.34 7.4E-06 53.7 19.7 178 10-191 181-373 (1005)
188 PF08064 UME: UME (NUC010) dom 96.4 0.048 1E-06 46.5 10.5 98 371-470 4-106 (107)
189 KOG2160 Armadillo/beta-catenin 96.3 0.77 1.7E-05 47.3 20.4 147 129-279 94-241 (342)
190 KOG2149 Uncharacterized conser 96.3 0.076 1.7E-06 55.2 13.5 132 380-511 60-192 (393)
191 KOG1837 Uncharacterized conser 96.3 4.7 0.0001 50.0 33.1 220 805-1030 1371-1620(1621)
192 smart00802 UME Domain in UVSB 96.3 0.058 1.3E-06 45.5 10.1 98 370-469 3-105 (107)
193 COG5116 RPN2 26S proteasome re 96.3 0.06 1.3E-06 57.7 12.5 154 340-513 519-674 (926)
194 KOG1822 Uncharacterized conser 96.2 6 0.00013 50.1 61.7 204 393-600 799-1013(2067)
195 PF05536 Neurochondrin: Neuroc 96.1 3.5 7.6E-05 47.2 34.3 180 352-538 72-266 (543)
196 KOG0889 Histone acetyltransfer 96.0 11 0.00023 51.2 68.7 420 153-575 715-1306(3550)
197 PF08064 UME: UME (NUC010) dom 96.0 0.044 9.6E-07 46.7 8.3 98 454-556 5-106 (107)
198 KOG1048 Neural adherens juncti 95.9 2 4.2E-05 49.2 22.7 325 116-449 230-642 (717)
199 KOG1243 Protein kinase [Genera 95.9 0.3 6.6E-06 54.6 16.1 190 246-452 329-519 (690)
200 KOG1525 Sister chromatid cohes 95.8 7.7 0.00017 48.4 50.3 350 202-575 45-405 (1266)
201 KOG1410 Nuclear transport rece 95.8 4.2 9.1E-05 45.3 71.0 326 3-344 5-356 (1082)
202 PF01603 B56: Protein phosphat 95.8 0.29 6.2E-06 53.8 16.0 235 4-246 134-381 (409)
203 smart00802 UME Domain in UVSB 95.7 0.056 1.2E-06 45.6 7.6 97 454-555 5-105 (107)
204 KOG1243 Protein kinase [Genera 95.7 0.26 5.5E-06 55.2 14.6 188 289-489 327-515 (690)
205 PF03224 V-ATPase_H_N: V-ATPas 95.6 0.7 1.5E-05 49.1 17.8 196 35-240 55-274 (312)
206 KOG2759 Vacuolar H+-ATPase V1 95.6 3.9 8.4E-05 43.2 22.8 311 115-448 115-438 (442)
207 KOG0567 HEAT repeat-containing 95.6 2 4.3E-05 42.2 18.2 111 352-492 171-283 (289)
208 PF10363 DUF2435: Protein of u 95.5 0.11 2.3E-06 42.7 8.6 73 826-900 5-77 (92)
209 KOG2149 Uncharacterized conser 95.4 0.26 5.7E-06 51.4 12.7 126 344-469 65-191 (393)
210 KOG1517 Guanine nucleotide bin 95.3 0.8 1.7E-05 53.5 17.2 223 176-409 486-734 (1387)
211 PF01603 B56: Protein phosphat 95.3 0.61 1.3E-05 51.3 16.2 242 666-942 129-374 (409)
212 KOG0567 HEAT repeat-containing 95.3 2.4 5.3E-05 41.6 17.7 67 503-581 220-286 (289)
213 KOG2137 Protein kinase [Signal 95.2 1.7 3.8E-05 49.1 19.2 118 817-939 342-459 (700)
214 KOG0946 ER-Golgi vesicle-tethe 95.1 8.1 0.00018 44.3 40.1 338 35-382 22-415 (970)
215 PF10363 DUF2435: Protein of u 95.1 0.2 4.2E-06 41.1 8.8 84 340-431 6-89 (92)
216 KOG3687 Tuberin - Rap/ran-GTPa 95.0 9.2 0.0002 44.8 23.8 52 546-597 649-701 (1697)
217 PF14222 MOR2-PAG1_N: Cell mor 95.0 3 6.6E-05 47.7 20.9 107 78-189 129-249 (552)
218 PF08623 TIP120: TATA-binding 94.9 0.18 4E-06 46.4 9.1 96 372-470 3-116 (169)
219 KOG1949 Uncharacterized conser 94.9 8.6 0.00019 43.4 22.8 107 338-446 221-329 (1005)
220 PF08623 TIP120: TATA-binding 94.9 0.38 8.2E-06 44.4 10.9 130 902-1033 4-165 (169)
221 COG5095 TAF6 Transcription ini 94.9 3 6.5E-05 41.4 17.3 164 661-853 193-358 (450)
222 PF04118 Dopey_N: Dopey, N-ter 94.9 2.3 5E-05 44.1 17.9 147 348-494 22-172 (307)
223 COG5218 YCG1 Chromosome conden 94.9 7.7 0.00017 42.7 40.9 174 4-184 12-194 (885)
224 COG5095 TAF6 Transcription ini 94.8 1.6 3.4E-05 43.3 15.3 98 800-897 253-361 (450)
225 KOG2137 Protein kinase [Signal 94.8 1.9 4E-05 48.9 18.0 136 114-259 385-520 (700)
226 PF08767 CRM1_C: CRM1 C termin 94.8 5.9 0.00013 42.0 21.3 169 542-750 67-244 (319)
227 KOG4500 Rho/Rac GTPase guanine 94.8 6.6 0.00014 41.5 28.3 113 377-490 314-432 (604)
228 COG5116 RPN2 26S proteasome re 94.7 0.3 6.4E-06 52.7 11.1 125 333-474 551-676 (926)
229 PF10521 DUF2454: Protein of u 94.6 0.48 1E-05 49.2 12.5 147 114-260 115-278 (282)
230 PF12231 Rif1_N: Rap1-interact 94.4 9.2 0.0002 41.7 33.4 182 349-537 5-208 (372)
231 PF12530 DUF3730: Protein of u 94.3 6.7 0.00015 39.4 21.3 199 13-221 11-218 (234)
232 KOG2549 Transcription initiati 94.2 4.2 9E-05 44.6 18.3 162 662-854 204-370 (576)
233 KOG1525 Sister chromatid cohes 94.2 20 0.00044 44.9 52.9 359 87-477 58-441 (1266)
234 PF08767 CRM1_C: CRM1 C termin 94.0 9.6 0.00021 40.4 22.4 135 803-938 92-244 (319)
235 KOG0803 Predicted E3 ubiquitin 93.8 5.5 0.00012 49.7 20.6 256 161-451 43-307 (1312)
236 PF12074 DUF3554: Domain of un 93.8 10 0.00022 40.9 21.2 222 75-305 19-257 (339)
237 PF08389 Xpo1: Exportin 1-like 93.8 0.75 1.6E-05 42.6 11.1 124 316-443 5-148 (148)
238 KOG3961 Uncharacterized conser 93.7 0.25 5.3E-06 46.1 7.1 94 417-510 112-208 (262)
239 KOG1837 Uncharacterized conser 93.6 26 0.00056 44.0 36.2 95 435-536 1520-1614(1621)
240 smart00638 LPD_N Lipoprotein N 93.6 5.9 0.00013 46.6 20.5 140 332-485 392-541 (574)
241 cd08050 TAF6 TATA Binding Prot 93.4 0.99 2.2E-05 48.2 12.4 127 378-513 178-321 (343)
242 smart00638 LPD_N Lipoprotein N 93.3 21 0.00046 42.0 24.5 166 292-483 393-572 (574)
243 cd03568 VHS_STAM VHS domain fa 93.3 1.9 4.1E-05 39.1 12.1 112 346-465 13-128 (144)
244 PF01347 Vitellogenin_N: Lipop 93.3 19 0.00041 42.9 24.4 108 316-443 507-617 (618)
245 PF01347 Vitellogenin_N: Lipop 93.2 2.2 4.7E-05 50.8 16.4 150 319-485 414-585 (618)
246 PF12530 DUF3730: Protein of u 92.8 12 0.00026 37.7 21.2 193 261-475 13-218 (234)
247 COG5657 CSE1 CAS/CSE protein i 92.7 26 0.00056 41.3 49.7 107 254-367 43-153 (947)
248 PF12726 SEN1_N: SEN1 N termin 92.5 31 0.00066 41.8 26.8 69 79-148 78-150 (727)
249 cd03567 VHS_GGA VHS domain fam 91.9 4.6 0.0001 36.3 12.5 110 346-465 14-131 (139)
250 KOG4199 Uncharacterized conser 91.7 17 0.00038 37.2 25.6 301 346-696 116-442 (461)
251 PF12726 SEN1_N: SEN1 N termin 91.7 38 0.00082 41.1 34.4 150 36-192 78-246 (727)
252 cd08050 TAF6 TATA Binding Prot 91.6 1.4 3E-05 47.2 10.6 125 322-446 198-338 (343)
253 KOG2549 Transcription initiati 91.6 6.2 0.00013 43.3 15.1 153 315-470 223-393 (576)
254 PF12054 DUF3535: Domain of un 91.5 27 0.00059 38.9 21.7 77 314-390 102-180 (441)
255 PF08569 Mo25: Mo25-like; Int 91.3 22 0.00049 37.7 25.4 189 82-279 80-284 (335)
256 KOG3961 Uncharacterized conser 91.3 0.92 2E-05 42.5 7.5 88 825-913 115-205 (262)
257 PF11919 DUF3437: Domain of un 91.1 0.22 4.8E-06 40.4 3.0 81 965-1048 5-86 (90)
258 PF03224 V-ATPase_H_N: V-ATPas 90.5 4.8 0.0001 42.8 13.6 130 379-513 106-251 (312)
259 cd03569 VHS_Hrs_Vps27p VHS dom 90.5 7.1 0.00015 35.4 12.5 76 378-453 41-119 (142)
260 KOG4199 Uncharacterized conser 90.4 23 0.0005 36.4 31.0 311 115-446 105-442 (461)
261 PF00514 Arm: Armadillo/beta-c 90.4 0.54 1.2E-05 31.8 4.0 29 378-406 12-40 (41)
262 cd03561 VHS VHS domain family; 90.3 5.6 0.00012 35.7 11.7 88 377-464 36-130 (133)
263 cd03568 VHS_STAM VHS domain fa 90.3 3.5 7.7E-05 37.4 10.4 75 418-492 36-113 (144)
264 COG5231 VMA13 Vacuolar H+-ATPa 90.0 24 0.00052 35.9 19.0 70 378-448 356-428 (432)
265 COG5098 Chromosome condensatio 89.7 42 0.0009 38.2 57.8 132 317-450 280-417 (1128)
266 PF12074 DUF3554: Domain of un 89.6 33 0.00072 37.0 21.4 210 291-511 21-254 (339)
267 PF08146 BP28CT: BP28CT (NUC21 89.6 6 0.00013 36.4 11.5 131 759-898 6-150 (153)
268 PF00514 Arm: Armadillo/beta-c 89.3 0.7 1.5E-05 31.2 4.0 29 866-894 12-40 (41)
269 KOG1048 Neural adherens juncti 89.3 49 0.0011 38.5 24.6 401 2-449 232-685 (717)
270 KOG0929 Guanine nucleotide exc 89.1 27 0.00059 44.2 19.4 232 87-331 1045-1301(1514)
271 cd03572 ENTH_epsin_related ENT 88.2 8.8 0.00019 33.4 10.7 72 376-447 36-118 (122)
272 PF08161 NUC173: NUC173 domain 88.2 14 0.0003 35.8 13.3 74 465-541 5-78 (198)
273 COG5218 YCG1 Chromosome conden 87.9 50 0.0011 36.8 45.5 215 241-486 43-263 (885)
274 KOG0803 Predicted E3 ubiquitin 87.7 26 0.00057 44.1 18.3 105 342-446 46-151 (1312)
275 PF14664 RICTOR_N: Rapamycin-i 87.7 46 0.00099 36.1 18.8 218 217-448 36-269 (371)
276 KOG2122 Beta-catenin-binding p 87.7 81 0.0018 39.7 21.2 75 865-941 529-604 (2195)
277 PF08713 DNA_alkylation: DNA a 87.6 11 0.00024 37.4 13.1 76 336-417 119-194 (213)
278 KOG2122 Beta-catenin-binding p 87.6 57 0.0012 40.9 19.9 113 377-489 480-601 (2195)
279 PF14668 RICTOR_V: Rapamycin-i 87.2 2.5 5.4E-05 32.8 6.1 56 353-409 3-60 (73)
280 PF04118 Dopey_N: Dopey, N-ter 87.1 42 0.00091 35.1 22.8 174 257-446 63-252 (307)
281 KOG0946 ER-Golgi vesicle-tethe 86.8 70 0.0015 37.3 38.8 275 2-278 21-346 (970)
282 KOG2842 Interferon-related pro 86.7 45 0.00098 35.1 18.1 205 347-551 70-294 (427)
283 PLN03205 ATR interacting prote 86.5 34 0.00073 35.9 15.2 181 97-279 302-517 (652)
284 PF12765 Cohesin_HEAT: HEAT re 86.5 1.1 2.4E-05 30.3 3.5 40 360-401 2-41 (42)
285 smart00288 VHS Domain present 86.5 17 0.00036 32.7 12.1 75 378-452 37-115 (133)
286 KOG1848 Uncharacterized conser 86.5 99 0.0021 38.7 25.0 247 91-367 854-1133(1610)
287 PF12830 Nipped-B_C: Sister ch 86.2 33 0.00071 33.0 16.0 75 335-413 6-80 (187)
288 cd03561 VHS VHS domain family; 86.1 6.7 0.00014 35.2 9.4 76 418-493 36-116 (133)
289 PF12333 Ipi1_N: Rix1 complex 85.9 3.2 7E-05 35.1 6.8 63 369-431 2-65 (102)
290 PF09324 DUF1981: Domain of un 85.9 3.8 8.3E-05 33.3 7.0 69 158-231 16-84 (86)
291 PF11698 V-ATPase_H_C: V-ATPas 85.5 3.7 7.9E-05 35.4 6.8 71 117-189 42-115 (119)
292 PF04388 Hamartin: Hamartin pr 85.4 69 0.0015 38.1 19.6 153 3-170 4-163 (668)
293 PF11919 DUF3437: Domain of un 84.9 1.4 3.1E-05 35.8 4.0 61 352-413 4-64 (90)
294 KOG1877 Putative transmembrane 84.9 92 0.002 37.0 20.0 239 646-896 74-330 (819)
295 PF00790 VHS: VHS domain; Int 84.9 18 0.00038 32.9 11.7 91 445-536 28-121 (140)
296 PF09324 DUF1981: Domain of un 84.6 4.6 9.9E-05 32.8 6.9 70 75-144 14-85 (86)
297 PF03542 Tuberin: Tuberin; In 84.6 28 0.0006 37.2 14.4 95 392-491 211-305 (356)
298 COG5231 VMA13 Vacuolar H+-ATPa 84.3 52 0.0011 33.7 23.0 188 201-407 234-428 (432)
299 cd03565 VHS_Tom1 VHS domain fa 83.9 24 0.00051 32.0 11.9 113 346-466 14-134 (141)
300 cd03567 VHS_GGA VHS domain fam 83.8 13 0.00027 33.6 9.9 74 419-492 38-119 (139)
301 PF11698 V-ATPase_H_C: V-ATPas 83.6 5.3 0.00011 34.4 7.0 70 378-448 43-115 (119)
302 PF00790 VHS: VHS domain; Int 83.6 34 0.00075 31.0 13.3 75 377-451 41-121 (140)
303 PF08569 Mo25: Mo25-like; Int 83.3 67 0.0015 34.2 23.8 109 342-450 169-285 (335)
304 smart00288 VHS Domain present 83.0 31 0.00068 30.9 12.2 78 458-536 35-114 (133)
305 PF11701 UNC45-central: Myosin 82.9 4.2 9E-05 37.8 6.8 144 34-186 2-156 (157)
306 cd03569 VHS_Hrs_Vps27p VHS dom 82.6 24 0.00051 32.1 11.3 98 90-193 19-118 (142)
307 PF12830 Nipped-B_C: Sister ch 82.2 50 0.0011 31.8 15.4 76 78-156 8-83 (187)
308 PF14664 RICTOR_N: Rapamycin-i 81.3 87 0.0019 34.1 18.7 239 333-576 21-270 (371)
309 PF07571 DUF1546: Protein of u 80.9 5.1 0.00011 33.0 5.9 57 310-366 17-78 (92)
310 KOG1222 Kinesin associated pro 80.8 90 0.0019 33.9 24.5 119 394-512 279-397 (791)
311 PF08161 NUC173: NUC173 domain 80.6 27 0.00058 33.9 11.6 57 645-701 17-73 (198)
312 PF11701 UNC45-central: Myosin 80.3 18 0.0004 33.6 10.1 129 314-444 20-155 (157)
313 PF04078 Rcd1: Cell differenti 79.6 3.8 8.3E-05 40.7 5.5 133 802-937 69-217 (262)
314 KOG3036 Protein involved in ce 79.3 68 0.0015 31.6 13.7 182 5-189 28-247 (293)
315 PF14631 FancD2: Fanconi anaem 78.6 28 0.0006 45.1 13.9 142 369-514 426-567 (1426)
316 PF08713 DNA_alkylation: DNA a 78.6 65 0.0014 31.8 14.4 153 17-191 33-186 (213)
317 KOG0929 Guanine nucleotide exc 78.3 76 0.0017 40.5 16.8 252 158-430 1035-1322(1514)
318 PF12333 Ipi1_N: Rix1 complex 78.2 7.5 0.00016 32.9 6.2 61 412-472 4-65 (102)
319 KOG3036 Protein involved in ce 78.0 75 0.0016 31.4 13.5 83 223-305 96-181 (293)
320 COG5098 Chromosome condensatio 77.8 1.4E+02 0.003 34.4 55.6 116 162-281 302-418 (1128)
321 PF12783 Sec7_N: Guanine nucle 76.7 34 0.00075 32.2 11.1 98 352-449 37-147 (168)
322 cd03572 ENTH_epsin_related ENT 76.7 15 0.00033 32.0 7.7 75 458-532 36-118 (122)
323 PF10441 Urb2: Urb2/Npa2 famil 76.2 70 0.0015 31.9 13.6 161 886-1046 8-212 (223)
324 PF12765 Cohesin_HEAT: HEAT re 76.2 3.8 8.2E-05 27.8 3.1 41 141-184 2-42 (42)
325 PF04510 DUF577: Family of unk 76.0 20 0.00043 33.1 8.5 106 378-489 3-114 (174)
326 PF04388 Hamartin: Hamartin pr 75.3 52 0.0011 39.0 14.1 93 116-215 68-161 (668)
327 COG5369 Uncharacterized conser 75.0 6.8 0.00015 42.7 6.1 133 354-488 406-544 (743)
328 COG5537 IRR1 Cohesin [Cell div 74.2 1.6E+02 0.0035 33.3 16.1 160 237-414 264-429 (740)
329 smart00185 ARM Armadillo/beta- 73.8 4.9 0.00011 26.8 3.4 28 379-406 13-40 (41)
330 PF10350 DUF2428: Putative dea 73.5 83 0.0018 32.2 13.6 77 803-879 168-253 (255)
331 PF04078 Rcd1: Cell differenti 73.4 60 0.0013 32.6 11.7 180 8-191 2-220 (262)
332 KOG2973 Uncharacterized conser 73.3 28 0.00061 35.5 9.5 103 342-448 8-111 (353)
333 KOG1789 Endocytosis protein RM 73.1 2.3E+02 0.005 34.6 22.2 135 177-328 1742-1883(2235)
334 KOG2038 CAATT-binding transcri 73.0 1.9E+02 0.0042 33.8 30.5 109 155-277 300-408 (988)
335 cd00197 VHS_ENTH_ANTH VHS, ENT 72.9 63 0.0014 28.0 11.3 71 376-446 35-113 (115)
336 KOG2199 Signal transducing ada 72.5 49 0.0011 34.8 11.2 100 345-452 20-122 (462)
337 PF11707 Npa1: Ribosome 60S bi 72.5 1.4E+02 0.0031 31.9 17.0 154 337-490 56-238 (330)
338 PF12783 Sec7_N: Guanine nucle 71.8 74 0.0016 30.0 12.0 98 392-489 36-146 (168)
339 cd06561 AlkD_like A new struct 71.2 16 0.00035 35.7 7.7 72 340-416 108-179 (197)
340 PF14868 DUF4487: Domain of un 70.7 2E+02 0.0044 33.0 23.8 78 332-409 474-554 (559)
341 PF14225 MOR2-PAG1_C: Cell mor 70.7 1.3E+02 0.0028 30.8 19.0 73 375-451 185-257 (262)
342 KOG1848 Uncharacterized conser 69.6 3.1E+02 0.0068 34.8 26.2 241 426-700 849-1134(1610)
343 cd00197 VHS_ENTH_ANTH VHS, ENT 69.3 69 0.0015 27.8 10.4 72 334-405 34-113 (115)
344 KOG3687 Tuberin - Rap/ran-GTPa 69.0 2.7E+02 0.0058 33.7 31.4 39 559-597 486-524 (1697)
345 KOG2011 Sister chromatid cohes 68.9 2.8E+02 0.006 34.4 17.8 127 354-482 262-392 (1048)
346 PF07571 DUF1546: Protein of u 68.8 18 0.0004 29.8 6.2 59 389-447 17-77 (92)
347 cd03565 VHS_Tom1 VHS domain fa 68.6 93 0.002 28.2 12.0 80 458-537 36-119 (141)
348 cd07064 AlkD_like_1 A new stru 68.4 41 0.00088 33.1 9.7 93 321-419 96-191 (208)
349 PF14868 DUF4487: Domain of un 68.4 2.3E+02 0.0049 32.7 27.0 97 314-412 243-340 (559)
350 KOG2213 Apoptosis inhibitor 5/ 68.2 1.7E+02 0.0037 31.2 18.8 62 474-536 255-317 (460)
351 smart00185 ARM Armadillo/beta- 67.2 7.7 0.00017 25.8 3.2 28 867-894 13-40 (41)
352 KOG1810 Cell cycle-associated 67.0 2.7E+02 0.0059 34.9 17.1 162 289-450 776-968 (1417)
353 PF12397 U3snoRNP10: U3 small 66.7 24 0.00052 31.1 7.0 74 821-897 3-76 (121)
354 COG4912 Predicted DNA alkylati 66.1 45 0.00097 32.3 8.8 83 322-410 102-186 (222)
355 COG5234 CIN1 Beta-tubulin fold 65.3 38 0.00083 38.6 9.3 240 334-590 243-505 (993)
356 KOG1222 Kinesin associated pro 63.2 2.4E+02 0.0051 31.0 27.1 95 135-235 280-374 (791)
357 KOG1789 Endocytosis protein RM 62.6 3.7E+02 0.008 33.0 21.3 60 7-66 1816-1884(2235)
358 PF08146 BP28CT: BP28CT (NUC21 62.0 98 0.0021 28.6 10.2 82 739-836 39-120 (153)
359 PF10350 DUF2428: Putative dea 61.9 1.5E+02 0.0032 30.4 12.6 153 351-503 61-242 (255)
360 COG5369 Uncharacterized conser 60.0 2.9E+02 0.0063 31.0 16.9 96 802-898 408-505 (743)
361 KOG2199 Signal transducing ada 57.5 1.1E+02 0.0023 32.5 10.3 76 335-410 43-121 (462)
362 PF11935 DUF3453: Domain of un 55.0 2.4E+02 0.0052 28.5 18.6 122 387-512 2-164 (239)
363 PF12397 U3snoRNP10: U3 small 53.9 69 0.0015 28.1 7.7 73 333-408 2-75 (121)
364 PF11841 DUF3361: Domain of un 53.9 1.1E+02 0.0024 28.3 8.8 74 419-492 58-134 (160)
365 COG5209 RCD1 Uncharacterized p 53.3 22 0.00048 34.1 4.4 71 825-895 146-218 (315)
366 PF14631 FancD2: Fanconi anaem 53.2 6.7E+02 0.015 33.1 31.9 141 289-438 432-573 (1426)
367 smart00567 EZ_HEAT E-Z type HE 53.0 20 0.00043 21.9 2.9 15 351-365 1-15 (30)
368 PF06685 DUF1186: Protein of u 52.8 2.6E+02 0.0057 28.3 14.6 47 910-956 114-161 (249)
369 PF03542 Tuberin: Tuberin; In 52.4 3.3E+02 0.0072 29.4 18.4 169 77-256 140-328 (356)
370 PF03130 HEAT_PBS: PBS lyase H 51.1 12 0.00026 22.4 1.6 14 394-407 1-14 (27)
371 KOG1087 Cytosolic sorting prot 49.8 2.2E+02 0.0048 31.8 12.1 100 345-452 13-116 (470)
372 PF12612 TFCD_C: Tubulin foldi 49.8 1.7E+02 0.0037 28.3 10.4 134 351-489 21-158 (193)
373 KOG2081 Nuclear transport regu 49.5 4.4E+02 0.0095 29.9 45.1 326 378-767 199-553 (559)
374 PF03810 IBN_N: Importin-beta 49.1 74 0.0016 24.9 6.5 57 990-1046 14-71 (77)
375 KOG3678 SARM protein (with ste 47.4 4.1E+02 0.009 29.0 18.0 154 31-192 176-339 (832)
376 PF14961 BROMI: Broad-minded p 46.9 4.3E+02 0.0094 33.2 14.5 137 120-258 163-316 (1296)
377 PF05327 RRN3: RNA polymerase 44.5 5.8E+02 0.013 29.9 16.2 131 844-985 55-199 (563)
378 KOG2085 Serine/threonine prote 43.8 4.6E+02 0.0099 28.5 15.1 92 418-509 298-392 (457)
379 PF12243 CTK3: CTD kinase subu 43.6 1.6E+02 0.0035 26.5 8.1 80 380-468 10-92 (139)
380 KOG2999 Regulator of Rac1, req 43.4 4.2E+02 0.0091 29.9 12.5 144 5-151 85-246 (713)
381 PF14911 MMS22L_C: S-phase gen 42.7 4.7E+02 0.01 28.3 20.6 57 842-898 228-290 (373)
382 KOG1087 Cytosolic sorting prot 41.9 2.4E+02 0.0052 31.6 10.8 98 90-193 16-116 (470)
383 KOG2973 Uncharacterized conser 41.7 4.3E+02 0.0092 27.5 23.0 108 120-236 5-112 (353)
384 cd03562 CID CID (CTD-Interacti 41.1 2.3E+02 0.0051 24.4 8.9 69 416-484 34-103 (114)
385 PF01465 GRIP: GRIP domain; I 39.2 87 0.0019 21.8 4.6 35 74-109 3-37 (46)
386 COG5537 IRR1 Cohesin [Cell div 38.7 6.6E+02 0.014 28.9 15.3 114 372-487 268-384 (740)
387 PF14222 MOR2-PAG1_N: Cell mor 38.2 7E+02 0.015 29.0 30.2 318 682-1024 144-503 (552)
388 cd00864 PI3Ka Phosphoinositide 38.1 3.3E+02 0.0071 25.2 11.0 74 8-91 44-118 (152)
389 cd00872 PI3Ka_I Phosphoinositi 37.5 3.6E+02 0.0078 25.5 11.2 34 49-90 84-117 (171)
390 cd00872 PI3Ka_I Phosphoinositi 37.5 1.2E+02 0.0027 28.5 6.8 78 117-212 38-115 (171)
391 PF14225 MOR2-PAG1_C: Cell mor 37.5 4.7E+02 0.01 26.8 20.1 125 96-238 132-257 (262)
392 KOG1851 Uncharacterized conser 35.0 1.2E+03 0.025 30.7 35.9 154 420-580 1527-1683(1710)
393 COG5234 CIN1 Beta-tubulin fold 34.1 8.3E+02 0.018 28.7 18.4 113 71-191 379-493 (993)
394 KOG2005 26S proteasome regulat 33.1 8.5E+02 0.018 28.5 18.3 56 346-407 649-704 (878)
395 cd03562 CID CID (CTD-Interacti 33.1 1.9E+02 0.0042 24.9 7.1 70 821-891 34-104 (114)
396 PF01417 ENTH: ENTH domain; I 32.4 3.5E+02 0.0076 23.8 9.7 72 342-418 8-82 (125)
397 PF01417 ENTH: ENTH domain; I 32.2 3.5E+02 0.0077 23.8 8.7 84 322-405 23-119 (125)
398 KOG3678 SARM protein (with ste 30.8 7.5E+02 0.016 27.2 17.1 134 221-367 197-337 (832)
399 PF14668 RICTOR_V: Rapamycin-i 30.8 1.5E+02 0.0033 23.1 5.2 53 395-449 4-59 (73)
400 PHA02836 putative transmembran 30.8 53 0.0012 28.3 2.9 37 842-878 104-141 (153)
401 PF11640 TAN: Telomere-length 30.6 4.4E+02 0.0095 24.4 10.5 85 5-89 6-118 (155)
402 PHA01351 putative minor struct 30.1 6.2E+02 0.014 29.4 11.4 14 950-963 862-875 (1070)
403 smart00582 RPR domain present 30.0 3.7E+02 0.0079 23.4 8.5 61 383-452 5-65 (121)
404 KOG2256 Predicted protein invo 29.4 9.6E+02 0.021 28.0 26.8 201 393-595 257-476 (661)
405 cd00870 PI3Ka_III Phosphoinosi 29.3 2E+02 0.0043 27.0 6.8 33 172-212 90-122 (166)
406 PF05327 RRN3: RNA polymerase 28.9 1E+03 0.022 28.0 20.4 34 245-278 344-377 (563)
407 PF12243 CTK3: CTD kinase subu 28.9 4.4E+02 0.0096 23.9 10.4 80 422-510 11-93 (139)
408 PF12612 TFCD_C: Tubulin foldi 28.8 5.4E+02 0.012 24.9 13.7 153 74-235 3-158 (193)
409 KOG2011 Sister chromatid cohes 28.6 1.3E+03 0.027 29.1 22.1 94 395-490 262-356 (1048)
410 PF11935 DUF3453: Domain of un 27.4 6.6E+02 0.014 25.4 17.2 93 160-253 44-163 (239)
411 PF14228 MOR2-PAG1_mid: Cell m 27.0 1.4E+03 0.031 29.2 24.5 56 841-896 932-987 (1120)
412 PF11707 Npa1: Ribosome 60S bi 26.7 8.1E+02 0.018 26.2 19.3 161 161-328 58-237 (330)
413 COG5209 RCD1 Uncharacterized p 26.5 1.1E+02 0.0024 29.7 4.5 82 224-305 118-202 (315)
414 PF05997 Nop52: Nucleolar prot 26.2 3.8E+02 0.0082 26.6 8.5 85 423-507 4-92 (217)
415 PF14676 FANCI_S2: FANCI solen 25.6 5.5E+02 0.012 23.9 8.9 105 117-232 54-158 (158)
416 PF09759 Atx10homo_assoc: Spin 25.6 3.2E+02 0.007 23.1 6.6 56 354-411 3-63 (102)
417 cd00870 PI3Ka_III Phosphoinosi 24.7 5.9E+02 0.013 23.9 11.0 66 16-91 59-125 (166)
418 KOG4646 Uncharacterized conser 24.7 5.1E+02 0.011 23.2 10.2 125 81-215 19-150 (173)
419 smart00145 PI3Ka Phosphoinosit 24.5 6.3E+02 0.014 24.2 10.7 34 49-90 89-122 (184)
420 smart00755 Grip golgin-97, Ran 24.1 1.8E+02 0.0038 20.4 4.0 34 75-110 3-36 (46)
421 PF04699 P16-Arc: ARP2/3 compl 24.0 2.6E+02 0.0056 25.8 6.2 57 990-1046 51-110 (152)
422 PF10165 Ric8: Guanine nucleot 24.0 1.1E+03 0.023 26.7 18.8 317 138-458 1-347 (446)
423 COG5221 DOP1 Dopey and related 23.8 1.5E+03 0.032 28.4 13.4 81 319-404 166-254 (1618)
424 COG5110 RPN1 26S proteasome re 23.8 1.1E+03 0.024 26.7 28.6 74 37-111 49-127 (881)
425 smart00145 PI3Ka Phosphoinosit 23.7 3.1E+02 0.0067 26.3 7.1 78 116-211 42-119 (184)
426 KOG2256 Predicted protein invo 23.2 1.2E+03 0.027 27.1 19.1 184 717-915 279-476 (661)
427 KOG2085 Serine/threonine prote 23.1 1E+03 0.022 26.0 16.1 71 527-597 322-394 (457)
428 PF14228 MOR2-PAG1_mid: Cell m 23.1 1.7E+03 0.036 28.6 28.9 56 882-939 932-987 (1120)
429 PF11841 DUF3361: Domain of un 22.9 6.2E+02 0.013 23.6 12.6 100 134-237 33-133 (160)
430 PF07539 DRIM: Down-regulated 22.7 5.9E+02 0.013 23.2 8.8 30 157-187 15-44 (141)
431 cd00864 PI3Ka Phosphoinositide 22.5 3.3E+02 0.0072 25.1 6.9 77 117-211 38-114 (152)
432 PF14961 BROMI: Broad-minded p 22.5 2.8E+02 0.006 34.7 7.8 72 81-152 164-236 (1296)
433 cd06561 AlkD_like A new struct 22.3 7E+02 0.015 24.0 15.5 66 422-492 108-173 (197)
434 PF00613 PI3Ka: Phosphoinositi 21.8 1.4E+02 0.003 28.6 4.4 78 117-212 44-121 (184)
435 PF06685 DUF1186: Protein of u 20.9 8.9E+02 0.019 24.6 17.9 153 332-511 30-195 (249)
436 PF08324 PUL: PUL domain; Int 20.9 9.2E+02 0.02 24.7 13.8 99 349-447 122-230 (268)
437 KOG3723 PH domain protein Melt 20.6 1.3E+03 0.028 26.3 21.7 188 734-958 54-246 (851)
438 PF04869 Uso1_p115_head: Uso1 20.5 1E+03 0.022 25.2 10.9 156 376-531 36-229 (312)
439 cd03571 ENTH_epsin ENTH domain 20.3 2.2E+02 0.0048 25.1 5.0 54 102-155 21-76 (123)
440 PF10193 Telomere_reg-2: Telom 20.2 4E+02 0.0087 23.1 6.5 66 868-933 5-77 (114)
441 PF09759 Atx10homo_assoc: Spin 20.0 4.1E+02 0.0088 22.5 6.2 57 395-452 3-63 (102)
No 1
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-122 Score=1018.51 Aligned_cols=1034 Identities=35% Similarity=0.562 Sum_probs=913.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHH
Q 001584 2 AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ 81 (1049)
Q Consensus 2 ~~~l~~ll~~~~s~d~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~ 81 (1049)
.+++.+|+++++||||++|++||+.|+.....+.....|.+++.+++++++|++|++++|+.+.++|+.++.+.++.||+
T Consensus 3 ~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks 82 (1075)
T KOG2171|consen 3 SAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKS 82 (1075)
T ss_pred hhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 46799999999999999999999999977766668899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHH
Q 001584 82 SLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQ 161 (1049)
Q Consensus 82 ~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~ 161 (1049)
.++..+.+|+.+.||+++|++++.|++..+|. .||+++++++++.+|+++..|+.|+.+|..+.+.++..+.+|+..+.
T Consensus 83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~ 161 (1075)
T KOG2171|consen 83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL 161 (1075)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH
Confidence 99999999999999999999999999999996 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHhhcccC-ChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcc
Q 001584 162 ALLLKCLQDETSNRVRIAALKAIGSFLEFTN-DGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (1049)
Q Consensus 162 ~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (1049)
+++.++++| ++..||.+|+++++.++.+.+ ++.....+..++|.++.++...++.++.+....++++|.++++..|++
T Consensus 162 ~lf~q~~~d-~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~ 240 (1075)
T KOG2171|consen 162 RLFSQTMTD-PSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL 240 (1075)
T ss_pred HHHHHhccC-CcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence 999999999 544499999999999999984 556788899999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcC-ChHHHHHHHhhhhccCCCC---------CCC
Q 001584 241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHK-LVIPILQVMCPLLAESNEA---------GED 310 (1049)
Q Consensus 241 ~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~-~~~~il~~l~~~l~~~~~~---------~~d 310 (1049)
+++++.+++++++.++.|++.++.+|..|++++.+++++.|...++.. +..+++..++.+|++.++| |+|
T Consensus 241 l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded 320 (1075)
T KOG2171|consen 241 LRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDED 320 (1075)
T ss_pred HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccc
Confidence 999999999999999999999999999999999999999888877653 6778889999888875544 122
Q ss_pred CCCcHHHHHHHHHHHHHHHcc-hhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCC
Q 001584 311 DDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD 389 (1049)
Q Consensus 311 ~~~~~~~~a~~~l~~l~~~~~-~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d 389 (1049)
+..++...|.+++++++.++| +.++|.+++.+..+++|++|+.|+||+.+++.++|||++.+.+++++|++.++++++|
T Consensus 321 ~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~D 400 (1075)
T KOG2171|consen 321 DEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLND 400 (1075)
T ss_pred cccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC
Confidence 335688999999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhHhhhcHHHHhhhh-hHHHHHHHhccCC-ChHHHHHHHHHHHHHHHhh-ccccccchHHHHH-HH
Q 001584 390 PEQFVRGAASFALGQFAEYLQPEIVSHYE-SVLPCILNALEDE-SDEVKEKSYYALAAFCEDM-GEEILPFLDPLMG-KL 465 (1049)
Q Consensus 390 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~ll~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~-~~~l~~~~~~ll~-~l 465 (1049)
|||+||++|+.++|++++.+++.++.++. .+.|.++..+.++ +++|+.+|+.++.+|.+.+ ++.+.||++.+++ .+
T Consensus 401 phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l 480 (1075)
T KOG2171|consen 401 PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKL 480 (1075)
T ss_pred CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987665 5555777777776 5799999999999999998 4568899999999 55
Q ss_pred HHhhcCCCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhccChhh-hhhHHHHHHHHHHHHHhhchhccccch
Q 001584 466 LAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDED-LRSRARATELLGLVAESVGRARMEPIL 544 (1049)
Q Consensus 466 ~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~r~~a~~~l~~l~~~~~~~~~~~~~ 544 (1049)
.-+++++.+.+++.++.+|++++.+.++.|.||++++||.|++++.+.++++ ..+|+++++|++.++.++|++.|.|+.
T Consensus 481 ~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a 560 (1075)
T KOG2171|consen 481 LLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA 560 (1075)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH
Confidence 5556778899999999999999999999999999999999999999877555 457999999999999999999999999
Q ss_pred HHHHHHHHhc---cCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCchhhhccCCCCC
Q 001584 545 PPFVEAAISG---FGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVS 621 (1049)
Q Consensus 545 ~~i~~~l~~~---l~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (1049)
.++++.+... ..+++...|++.+.+|++||+++|++|.||++.++|.++.+++.+++.... ++++.++.+...+|.
T Consensus 561 ~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~-d~~d~e~~~~~~~~e 639 (1075)
T KOG2171|consen 561 EELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALS-DEEDEEEEQDLDGWE 639 (1075)
T ss_pred HHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCc-Cchhhhhccccccch
Confidence 9999998886 335577899999999999999999999999999999999999988765433 333344444444442
Q ss_pred CCcchhhcccccceeeeccchhhHHHHHHHHHHHHHHhhhhchhhHHHHHHH-HHhhhcCCChHHHHHHHHHHHHHHHHH
Q 001584 622 SDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKI-LVRHASYFHEDVRYQAVFALKNILTAA 700 (1049)
Q Consensus 622 ~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~vr~~a~~~l~~l~~~~ 700 (1049)
.....+. +.++|+|+.+++|+.||.+|+.++..++..|.||+++.++. +..+..++|++||.+|+++++.++++.
T Consensus 640 ~~~~~~~----e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~ 715 (1075)
T KOG2171|consen 640 VVELGDK----ENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCA 715 (1075)
T ss_pred hhccCCc----eeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 1111111 27899999999999999999999999999999999999994 444566899999999999999999998
Q ss_pred HHhhccCCCChHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHhCCcccH-HHHHHHHHHHHHHHHhhh-hh
Q 001584 701 HAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVE-PYMSRLVDATLLLLREES-TC 778 (1049)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~i~~~g~~~~~-~~~~~l~~~l~~~l~~~~-~~ 778 (1049)
.... ..++..+..++..+++.+...+..|+++++...++++++.+++.+|+..+. +....+...+...+.... .+
T Consensus 716 ~~A~---~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~ 792 (1075)
T KOG2171|consen 716 LKAC---QGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRM 792 (1075)
T ss_pred HHHh---ccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 7654 346778999999999999999999999999999999999999999987664 466665555554443332 22
Q ss_pred cCCCCC--C-C---CCccccchhhHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhccCCCcccchhhhHhHHHH
Q 001584 779 QQPDND--S-D---IEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEV 852 (1049)
Q Consensus 779 ~~~~~~--~-~---~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l 852 (1049)
+....+ + | +++++..+.+..+++.+.+.+..+++..++.|.++|..++|.+.+.+.+++... |++|+++++++
T Consensus 793 ~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~-r~~av~~~~d~ 871 (1075)
T KOG2171|consen 793 QDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVA-RQWAVCIFDDL 871 (1075)
T ss_pred HhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHH
Confidence 221111 1 1 111222366788999999999999999999999999999999999999988877 99999999999
Q ss_pred HhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCCC----CCChhHHhh
Q 001584 853 ARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDS----EPDDAVRDN 928 (1049)
Q Consensus 853 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~----~~~~~~~~~ 928 (1049)
++++|+...+|.+.++|.++.++.|.+++||++|+|++|.++++++..+.+.....++.|..+++.+ +++..++||
T Consensus 872 ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateN 951 (1075)
T KOG2171|consen 872 IEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATEN 951 (1075)
T ss_pred HHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999999987777777777777777652 567889999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHhhCCCCCcHHhhHHHHHHHHHHHhhCChhhcc----hhhHHHHHHHHHhcCCCC
Q 001584 929 AAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQILS----LVPELVNLFAEVVVSPEE 1004 (1049)
Q Consensus 929 a~~~l~~i~~~~~~~~~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~----~~~~i~~~~~~~~~~~~~ 1004 (1049)
|++|++||+.++++.+|+++++|.|+++||+.+|.+|...+|++|+.|++.++|.+.+ ++|+|+.+++..+.++..
T Consensus 952 a~gaiaki~~~~~~~i~vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~p~v~~~~n~~ip~i~~v~~~~~~~~~~ 1031 (1075)
T KOG2171|consen 952 AIGAIAKILLFNPNRIPVDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNHPIVLGPNNQNIPKILSVCAESLADKKI 1031 (1075)
T ss_pred HHHHHHHHHHhCCccCcHHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCCCeeeCCCcccchHHHHHHHhhhhccCC
Confidence 9999999999999999999999999999999999999999999999999999999886 899999999999887643
Q ss_pred -ChHHHHHHHHHHHHHHHHhhhhHHHHHhcCCHHHHHHHHhhcC
Q 001584 1005 -SSEVKSQVGMAFSHLISLYGQQMQPLLSNLSPAHATALAAFAP 1047 (1049)
Q Consensus 1005 -~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 1047 (1049)
.++...+++.+++++.. .+++|.+++++|+++++.+||..++
T Consensus 1032 ~~~~~~~r~~~ilkq~~~-~~~~~~~~~~~L~~~~~~~lq~~~~ 1074 (1075)
T KOG2171|consen 1032 EPRSTLARVIEILKQFLA-PPSQFAALLATLPPDQQQALQAVLN 1074 (1075)
T ss_pred CccchHHHHHHHHHHHhc-CHHHHHHHHHhCCHHHHHHHHHHhc
Confidence 34445588889988886 6788999999999999999998864
No 2
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-73 Score=585.47 Aligned_cols=806 Identities=20% Similarity=0.312 Sum_probs=668.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHhc--CCChhHHHHHHHHHHHhhhhhccCCCHHHHHHHH
Q 001584 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRT--AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK 80 (1049)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~a~~~L~~~~~~p~~~~~l~~il~~--~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~ 80 (1049)
+|+.++|++.+|||+++|+.+...+.++...|+|-.+|..++.. +.+..+|+.|+.+||+.+..+|..++++....+|
T Consensus 13 ~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiK 92 (885)
T KOG2023|consen 13 QQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIK 92 (885)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHH
Confidence 67889999999999999999999999999999999999999875 5688899999999999999999999999999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhccc-----c
Q 001584 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFR-----P 155 (1049)
Q Consensus 81 ~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~-----~ 155 (1049)
+.+++.+.. .++.||.+...+|++|++...- ..||+++|.+.+++.+++.+..++|+.+|+.+++..++.+. .
T Consensus 93 s~~l~~lgd-~~~lIr~tvGivITTI~s~~~~-~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~r 170 (885)
T KOG2023|consen 93 SECLHGLGD-ASPLIRATVGIVITTIASTGGL-QHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTR 170 (885)
T ss_pred HHHHhhccC-chHHHHhhhhheeeeeeccccc-ccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccC
Confidence 999999994 8899999999999999987655 58999999999999999999999999999999998876543 3
Q ss_pred cHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 001584 156 HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIE 235 (1049)
Q Consensus 156 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~ 235 (1049)
.++-++|-+.+.+++ +++.+|..|+.|+..++...... +...+...++.++....++++++|+..|..|+-+.+
T Consensus 171 pl~~mipkfl~f~~h-~spkiRs~A~~cvNq~i~~~~qa-----l~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Lle 244 (885)
T KOG2023|consen 171 PLNIMIPKFLQFFKH-PSPKIRSHAVGCVNQFIIIQTQA-----LYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLE 244 (885)
T ss_pred chHHhHHHHHHHHhC-CChhHHHHHHhhhhheeecCcHH-----HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 456788999999998 89999999999999887765322 444556777777777788899999999999999999
Q ss_pred cCCcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhh--cCChHHHHHHHhhhhccCC--------
Q 001584 236 SPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKK--HKLVIPILQVMCPLLAESN-------- 305 (1049)
Q Consensus 236 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~--~~~~~~il~~l~~~l~~~~-------- 305 (1049)
..+..+.+|++.++++|+...++. ++++...|+|||.++++.. .... .+|+..+++.++.-|...+
T Consensus 245 vr~dkl~phl~~IveyML~~tqd~--dE~VALEACEFwla~aeqp--i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~ 320 (885)
T KOG2023|consen 245 VRPDKLVPHLDNIVEYMLQRTQDV--DENVALEACEFWLALAEQP--ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKN 320 (885)
T ss_pred hcHHhcccchHHHHHHHHHHccCc--chhHHHHHHHHHHHHhcCc--CcHHHHHHHHHHHHHHHHccCccccccHHHhcC
Confidence 999999999999999999877655 7889999999999999753 1111 1477777787776553110
Q ss_pred --C-----------------------------CCCC----------CCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHh
Q 001584 306 --E-----------------------------AGED----------DDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASV 344 (1049)
Q Consensus 306 --~-----------------------------~~~d----------~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~ 344 (1049)
+ +|+| .+|+.|++.+.+++.++..+|+++++.++|.+.+
T Consensus 321 ~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~ 400 (885)
T KOG2023|consen 321 NEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKE 400 (885)
T ss_pred ccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 0 0011 1489999999999999999999999999999999
Q ss_pred hhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHH-HHhhhhhHHHH
Q 001584 345 SCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE-IVSHYESVLPC 423 (1049)
Q Consensus 345 ~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~ll~~ 423 (1049)
.+.+++|++|+++++++|.|+|||.+.+.+|++.++|.++++|.|..|.||..+||+|++++.+...+ -.+++.+++..
T Consensus 401 ~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ 480 (885)
T KOG2023|consen 401 HLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEG 480 (885)
T ss_pred HcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987543 34788999999
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhcc--ccHHH
Q 001584 424 ILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFI--PYAER 501 (1049)
Q Consensus 424 l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~--~~~~~ 501 (1049)
+++.+-|.+.+||++||+++..+-+..++++.||++.+++.|...+.....+--.-.+.++|+++..+|..+. .|++.
T Consensus 481 ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~Yiqi 560 (885)
T KOG2023|consen 481 LLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQI 560 (885)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999887777677788999999999987665 47788
Q ss_pred HHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCc
Q 001584 502 VLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGF 581 (1049)
Q Consensus 502 ~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~~ 581 (1049)
+||.|.+-...-++++..+-. -++|++.++.++|. .|.||+++..+.....++. ++..++
T Consensus 561 LmPPLi~KW~~lsd~DKdLfP-LLEClSsia~AL~~-gF~P~~~~Vy~Rc~~il~~-----------t~q~~~------- 620 (885)
T KOG2023|consen 561 LMPPLIEKWELLSDSDKDLFP-LLECLSSIASALGV-GFLPYAQPVYQRCFRILQK-----------TLQLLA------- 620 (885)
T ss_pred hccHHHHHHHhcCcccchHHH-HHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHH-----------HHHHHH-------
Confidence 888777665543344434332 35677777666653 6666665544432211100 000000
Q ss_pred cCchhhhhHHHHhhccCCCCCccCCCCCchhhhccCCCCCCCcchhhcccccceeeeccchhhHHHHHHHHHHHHHHhhh
Q 001584 582 AQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKS 661 (1049)
Q Consensus 582 ~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~~ 661 (1049)
T Consensus 621 -------------------------------------------------------------------------------- 620 (885)
T KOG2023|consen 621 -------------------------------------------------------------------------------- 620 (885)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hchhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHhhhCChHHHHHHH
Q 001584 662 SYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQA 741 (1049)
Q Consensus 662 ~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 741 (1049)
+. . .+. ....+|++.+
T Consensus 621 ------------------------------------~~--------~-~~~----------------~~~~pdkdfi--- 636 (885)
T KOG2023|consen 621 ------------------------------------KV--------Q-QDP----------------TVEAPDKDFI--- 636 (885)
T ss_pred ------------------------------------hc--------c-CCc----------------cccCCCcceE---
Confidence 00 0 000 0001111111
Q ss_pred HHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhHHHHHHHHhHHHHHHHHhCCChHHH
Q 001584 742 CTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPI 821 (1049)
Q Consensus 742 ~~~l~~~i~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 821 (1049)
+ +..++++.+++.+|++..+.
T Consensus 637 ----------------------------------------------------------I-~sLDL~SGLaegLg~~ie~L 657 (885)
T KOG2023|consen 637 ----------------------------------------------------------I-VSLDLLSGLAEGLGSHIEPL 657 (885)
T ss_pred ----------------------------------------------------------E-EeHHHHhHHHHHhhhchHHH
Confidence 1 34455566666666655555
Q ss_pred HH--HHHHHHHHhhccCCCcccchhhhHhHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCc
Q 001584 822 FA--KLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGE 899 (1049)
Q Consensus 822 ~~--~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~ 899 (1049)
+. .+...++.++++..+ ++|++++..+|++.++|.+.+.|+...+++.+-..+.....++..||+|++|.++...+.
T Consensus 658 va~snl~~lll~C~~D~~p-eVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~ 736 (885)
T KOG2023|consen 658 VAQSNLLDLLLQCLQDEVP-EVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGL 736 (885)
T ss_pred hhhccHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhch
Confidence 44 366777778887654 799999999999999999899999999999999888888889999999999999999999
Q ss_pred chhhHHHHHHHhhhhhhCCCCCChhHHhhHHHHHHHHHHhCCCCC-C-hhhHHHHHHhhCCCCCcHHhhHHHHHHHHHHH
Q 001584 900 SALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSI-P-LNQVLPVLLKVLPLKEDFEESMAVYNCISTLV 977 (1049)
Q Consensus 900 ~~~~~~~~~l~~L~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~-~-~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~ 977 (1049)
..++|+..++..|.-+++.+..+..+.+|...++||+...+|+.+ | ++.++..|+..+....|.+|+..+|+++|.++
T Consensus 737 ~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi 816 (885)
T KOG2023|consen 737 KMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMI 816 (885)
T ss_pred hhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHhe
Confidence 999999999999998888777788999999999999999999987 4 89999999999988889999999999999999
Q ss_pred hhCChhhcchhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhh-hHHHHHhcCCHHHHHHHHhhcC
Q 001584 978 LSSNPQILSLVPELVNLFAEVVVSPEESSEVKSQVGMAFSHLISLYGQ-QMQPLLSNLSPAHATALAAFAP 1047 (1049)
Q Consensus 978 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~~~~~l~~~~~ 1047 (1049)
+-++..+...+..++.+++++- . ..++.+..+..+|..++...|. .|++...++||+.+++|+...+
T Consensus 817 ~vNp~~vv~~~~f~c~aiAsw~-n--p~~~l~~~f~kiL~g~k~qvg~~nW~~~~~qf~P~~~erl~a~y~ 884 (885)
T KOG2023|consen 817 NVNPSGVVSSFIFICDAIASWS-N--PEDDLRDEFYKILQGFKNQVGKINWQRFSEQFPPPLKERLQAFYG 884 (885)
T ss_pred eeCchhhhhhhHHHHHHHhccc-C--hHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCChhHHHHHHHHhC
Confidence 9888888888889999888874 2 3388999999999999999884 6999999999999999998754
No 3
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-58 Score=480.51 Aligned_cols=781 Identities=21% Similarity=0.326 Sum_probs=607.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--CCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhh-----------hhcc
Q 001584 4 SLELLLIQFLMPDNDARRQAEDQIKRLAKD--PQVVPALVQHLRTA-KTPNVRQLAAVLLRKKIT-----------GHWA 69 (1049)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~a~~~L~~~~~~--p~~~~~l~~il~~~-~~~~~R~~a~~~l~~~i~-----------~~w~ 69 (1049)
++.++|.+++|||.++|++|+++|+++.++ |+|+..|.+++.+. .+...|..|++.|||.+- .+|-
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl 81 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWL 81 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHH
Confidence 467888889999999999999999998764 78999999999875 478999999999999973 4799
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHH-HHHHHHHHHHHhhhh
Q 001584 70 KLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEE-HREVALILFSSLTET 148 (1049)
Q Consensus 70 ~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~-~~~~al~~l~~l~~~ 148 (1049)
.++.+.++++|+.+++.|.+ +.+..+..++++++.|+..++|.+.||++++.+.....++.+. +++++++++++++++
T Consensus 82 ~l~~e~reqVK~~il~tL~~-~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~ 160 (859)
T KOG1241|consen 82 QLPAEIREQVKNNILRTLGS-PEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICED 160 (859)
T ss_pred cCCHHHHHHHHHHHHHHcCC-CCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHcc
Confidence 99999999999999999996 8899999999999999999999999999999999998876654 899999999999998
Q ss_pred hh-hcccccHHHHHHHHHHhhCC-CCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHH
Q 001584 149 IG-QTFRPHFADMQALLLKCLQD-ETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIA 226 (1049)
Q Consensus 149 ~~-~~~~~~~~~l~~~l~~~l~~-~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~ 226 (1049)
.. +.+..+.+.++..+..+... +++..||.+|.+||.+.+++...+......++++- ++.....+.++.+++..+
T Consensus 161 i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iM---qvvcEatq~~d~~i~~aa 237 (859)
T KOG1241|consen 161 IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIM---QVVCEATQSPDEEIQVAA 237 (859)
T ss_pred CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceee---eeeeecccCCcHHHHHHH
Confidence 65 44566778888777777653 47889999999999999998865555555555543 333345566888999999
Q ss_pred HHHHHHHhccCCcchhhhHHH-HHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHh-------hhhh------c----C
Q 001584 227 FEIFDELIESPAPLLGDSVKS-IVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYN-------SLKK------H----K 288 (1049)
Q Consensus 227 ~~~l~~l~~~~~~~~~~~~~~-l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~-------~~~~------~----~ 288 (1049)
+.||..+...+..++.+++.+ ++...+..+.++ ++++..+++|||+++++-.-. ...+ . .
T Consensus 238 ~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~--~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~ 315 (859)
T KOG1241|consen 238 FQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSD--NDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQ 315 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHH
Confidence 999999999999999888865 777777777644 789999999999988763211 1100 0 1
Q ss_pred ChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcC
Q 001584 289 LVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC 368 (1049)
Q Consensus 289 ~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~ 368 (1049)
.++.++|.++..|.+.+++++||+|++..+|+.||..+++..+++++|+++|++.+.++++||+.|++|..++|.+.+|.
T Consensus 316 a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp 395 (859)
T KOG1241|consen 316 ALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGP 395 (859)
T ss_pred HHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCC
Confidence 22357888999999989999999999999999999999999999999999999999999999999999999999999985
Q ss_pred -hHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHH--HhhhhhHHHHHHHhccCCChHHHHHHHHHHHH
Q 001584 369 -AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI--VSHYESVLPCILNALEDESDEVKEKSYYALAA 445 (1049)
Q Consensus 369 -~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~ 445 (1049)
+..+.+...+.+|.++..+.|+...||.++.|++|++++.++..+ ..++..+++.++.+|+|. |+|...+|+++..
T Consensus 396 ~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~ 474 (859)
T KOG1241|consen 396 EPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFIS 474 (859)
T ss_pred chhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHH
Confidence 566777888999999999999999999999999999999987544 357789999999999987 8999999999999
Q ss_pred HHHhhcc---------ccccchHHHHHHHHHhhcC---CCHhHHHHHHHHHHHHHHHhhhhccccHHH----HHHHHHHH
Q 001584 446 FCEDMGE---------EILPFLDPLMGKLLAALEN---SPRNLQETCMSAIGSVAAAAEQAFIPYAER----VLELLKIF 509 (1049)
Q Consensus 446 l~~~~~~---------~l~~~~~~ll~~l~~~l~~---~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~----~~~~l~~~ 509 (1049)
+++.+.+ ...|+++.|+..|+...+. .+..+|..++++++.++..+++...+-... ++..|.+.
T Consensus 475 Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~ 554 (859)
T KOG1241|consen 475 LAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQT 554 (859)
T ss_pred HHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9987642 2347899999999988765 457799999999999999888765544433 34444444
Q ss_pred Hhc-----cChh-hhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCC-CCchhhHHHHHHHHHHHHHcccCcc
Q 001584 510 MVL-----TNDE-DLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGL-EFSELREYTHGFFSNIAGVLEDGFA 582 (1049)
Q Consensus 510 l~~-----~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~r~~~~~~l~~l~~~~~~~~~ 582 (1049)
+.. .+.. ...+......+++.+.+.+++ .+.++.+.+|..+++.++. .+..+.+.++.+++.++..+|..|.
T Consensus 555 i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~-~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~ 633 (859)
T KOG1241|consen 555 ISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS-DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFA 633 (859)
T ss_pred HHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHH
Confidence 431 1111 123445556788889989987 8899999999999998887 4556889999999999999999999
Q ss_pred CchhhhhHHHHhhccCCCCCccCCCCCchhhhccCCCCCCCcchhhcccccceeeeccchhhHHHHHHHHHHHHHHhhhh
Q 001584 583 QYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSS 662 (1049)
Q Consensus 583 ~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~~~ 662 (1049)
.|+|.+.|.|...++.-.+ -.+-..|...+|.++..++..
T Consensus 634 kym~~f~pyL~~gL~n~~e----------------------------------------~qVc~~aVglVgdl~raL~~~ 673 (859)
T KOG1241|consen 634 KYMPAFKPYLLMGLSNFQE----------------------------------------YQVCAAAVGLVGDLARALEDD 673 (859)
T ss_pred HHHHHHHHHHHHHhhcchH----------------------------------------HHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999987742110 025678889999999999999
Q ss_pred chhhHHHHHHHHHhhhcC--CChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHhhhCChHHHHHH
Q 001584 663 YAPFLEESLKILVRHASY--FHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQ 740 (1049)
Q Consensus 663 ~~~~~~~~~~~l~~~~~~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 740 (1049)
+.||.+.++..+++.+.+ .+.+++-....+.+.+.-+.+ ....+|+..+++.+...-....++..
T Consensus 674 i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg----------~~F~~Yl~~vm~llq~as~~~~d~~~--- 740 (859)
T KOG1241|consen 674 ILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIG----------ADFEPYLEMVMPLLQQASSVQTDPAD--- 740 (859)
T ss_pred hhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHH----------HhHHHHHHHHHHHHHHHHhccCCCCc---
Confidence 999999999999987654 466677777777777766654 23456666666655543211111100
Q ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhHHHHHHHHhHHHHHHHHhCC----
Q 001584 741 ACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGP---- 816 (1049)
Q Consensus 741 ~~~~l~~~i~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~---- 816 (1049)
.....|.++ +++++.+....+...++.
T Consensus 741 --------------~~~~dYvd~-----------------------------------LRe~~leay~gi~qglk~~~~~ 771 (859)
T KOG1241|consen 741 --------------DSMVDYVDE-----------------------------------LREGILEAYTGIIQGLKTHADV 771 (859)
T ss_pred --------------ccHHHHHHH-----------------------------------HHHHHHHHHHHHHHHhhcccch
Confidence 001122222 333444444444444442
Q ss_pred -ChHHHHHHHHHHHHHhhccCC-CcccchhhhHhHHHHHhhcCCchhhcH-h-hhHHHHH-HhcCCCChHhHHHHHHHHH
Q 001584 817 -HFAPIFAKLFDPLMKFAKSSR-PLQDRTMVVATLAEVARDMGSPIAAYV-D-RVMPLVL-KELASPDAMNRRNAAFCVG 891 (1049)
Q Consensus 817 -~~~~~~~~l~~~l~~~l~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~~-~-~i~~~l~-~~l~~~~~~vr~~a~~~lg 891 (1049)
...||+++++..+-+...++. +......|++++||++..+|....+++ . ..+..++ ++.+......|..|-|+.-
T Consensus 772 ~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~k~~~~~tK~~A~wa~e 851 (859)
T KOG1241|consen 772 MLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFLDEDWIKDFLNEGRKSSTQKTKDLARWATE 851 (859)
T ss_pred hhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhcchHHHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence 233677777776666554443 245677999999999999998766542 2 3444443 4555556677877777765
Q ss_pred HHH
Q 001584 892 ELC 894 (1049)
Q Consensus 892 ~l~ 894 (1049)
.+=
T Consensus 852 ~ik 854 (859)
T KOG1241|consen 852 EIK 854 (859)
T ss_pred HHH
Confidence 553
No 4
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=7.2e-47 Score=381.87 Aligned_cols=706 Identities=18% Similarity=0.238 Sum_probs=537.4
Q ss_pred HHHHHHHHH-hcCCCHHHHHHHHHHHHHHhcCC--CcHHHHHHHHhc-CCChhHHHHHHHHHHHhhh-----------hh
Q 001584 3 QSLELLLIQ-FLMPDNDARRQAEDQIKRLAKDP--QVVPALVQHLRT-AKTPNVRQLAAVLLRKKIT-----------GH 67 (1049)
Q Consensus 3 ~~l~~ll~~-~~s~d~~~r~~a~~~L~~~~~~p--~~~~~l~~il~~-~~~~~~R~~a~~~l~~~i~-----------~~ 67 (1049)
.++..+.++ .+|||++.|..||.+|.++.+.. +|+..+.+.+.+ .+.++.|-.|++.||+.+. .+
T Consensus 4 ~ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qr 83 (858)
T COG5215 4 SEFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQR 83 (858)
T ss_pred HHHHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHh
Confidence 356677777 48999999999999999998764 688889999987 4589999999999999973 47
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCH-HHHHHHHHHHHHhh
Q 001584 68 WAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQE-EHREVALILFSSLT 146 (1049)
Q Consensus 68 w~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~-~~~~~al~~l~~l~ 146 (1049)
|-.+++|.++++|...++.|.+ +.+..-+.+++.++.|++.+.|.+.||+++..+......+.+ ..+..++.++++.+
T Consensus 84 W~~~~~E~k~qvK~~al~aL~s-~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~c 162 (858)
T COG5215 84 WLGMRHESKEQVKGMALRALKS-PEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHC 162 (858)
T ss_pred hccCCHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHh
Confidence 9999999999999999999997 889999999999999999999999999999999998877654 56788999999999
Q ss_pred hhhhh-cccccHHHH-HHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHH
Q 001584 147 ETIGQ-TFRPHFADM-QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAV 224 (1049)
Q Consensus 147 ~~~~~-~~~~~~~~l-~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~ 224 (1049)
+...+ .+....+.+ +.++...++..++..||.+|++||..-+.+...+.+.+..++++ +++.....+.++.+...
T Consensus 163 es~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~---mqvvceatq~~d~e~q~ 239 (858)
T COG5215 163 ESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYF---MQVVCEATQGNDEELQH 239 (858)
T ss_pred hccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchh---heeeehhccCCcHHHHH
Confidence 87554 444444444 45555566666788999999999988666654444444344454 34444456678889999
Q ss_pred HHHHHHHHHhccCCcchhhhHHHHHH-HHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhh-----------hhhcCC---
Q 001584 225 IAFEIFDELIESPAPLLGDSVKSIVH-FSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS-----------LKKHKL--- 289 (1049)
Q Consensus 225 ~~~~~l~~l~~~~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~-----------~~~~~~--- 289 (1049)
.++-||..+...+.+|+..++.+.+- +....+.++ .+++..+++|+|+++++..-.. ..+++|
T Consensus 240 aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~--nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~a 317 (858)
T COG5215 240 AAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQ--NDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARA 317 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--chHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHH
Confidence 99999999998888888888766543 333444444 7899999999999987632111 111222
Q ss_pred -hHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcC
Q 001584 290 -VIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC 368 (1049)
Q Consensus 290 -~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~ 368 (1049)
+..++|.++.+|+..++|.++|+|++..+|..||..+++..|..++.+++.++.+.+++++|..|++|..++|.+.++.
T Consensus 318 av~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp 397 (858)
T COG5215 318 AVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGP 397 (858)
T ss_pred HHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCc
Confidence 3458999999999999999999999999999999999999999899889999999999999999999999999999985
Q ss_pred hH-HHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHH--hhhhhHHHHHHHhccCCChHHHHHHHHHHHH
Q 001584 369 AE-WMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV--SHYESVLPCILNALEDESDEVKEKSYYALAA 445 (1049)
Q Consensus 369 ~~-~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~ 445 (1049)
.+ ...+.+++.+|.+...+.|+..-|+..+.||+|+++.+....+. .|+...+..++.++.|. |++...+++...+
T Consensus 398 ~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~-p~~~~ncsw~~~n 476 (858)
T COG5215 398 CEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC-PFRSINCSWRKEN 476 (858)
T ss_pred cHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc-chHHhhhHHHHHh
Confidence 54 45567899999999999999999999999999999999876654 37778888888888876 6778899999999
Q ss_pred HHHhhcc-------ccccchHHHHHHHHHhhc--CCCHhHHHHHHHHHHHHHHHhhhhc---------------------
Q 001584 446 FCEDMGE-------EILPFLDPLMGKLLAALE--NSPRNLQETCMSAIGSVAAAAEQAF--------------------- 495 (1049)
Q Consensus 446 l~~~~~~-------~l~~~~~~ll~~l~~~l~--~~~~~v~~~~~~~l~~l~~~~~~~~--------------------- 495 (1049)
+++.+++ .+.++++.++..|+...+ .++...|..+++++|.++..+++..
T Consensus 477 lv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv 556 (858)
T COG5215 477 LVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISV 556 (858)
T ss_pred HHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887643 345777888888877643 3456678888888887776544322
Q ss_pred -----------------------------------cccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhcc
Q 001584 496 -----------------------------------IPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARM 540 (1049)
Q Consensus 496 -----------------------------------~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 540 (1049)
.+.-+.+|.++.+++...+.. ..-+..+.+++.++.+++ +.|
T Consensus 557 ~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t--~~~~dV~~aIsal~~sl~-e~F 633 (858)
T COG5215 557 LGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPT--TAFGDVYTAISALSTSLE-ERF 633 (858)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCc--hhhhHHHHHHHHHHHHHH-HHH
Confidence 222222333333333322100 112233556777777776 489
Q ss_pred ccchHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCchhhhccCCCC
Q 001584 541 EPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGV 620 (1049)
Q Consensus 541 ~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1049)
+.|++.+++.+.+.++..+..+...+.+.+|+++..++.+|.+|-..++..|.+.++...
T Consensus 634 e~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~-------------------- 693 (858)
T COG5215 634 EQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEA-------------------- 693 (858)
T ss_pred HHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChh--------------------
Confidence 999999999999999888889999999999999999999999999999999998876321
Q ss_pred CCCcchhhcccccceeeeccchhhHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHhhhc-CC------ChHHHHHHHHHH
Q 001584 621 SSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHAS-YF------HEDVRYQAVFAL 693 (1049)
Q Consensus 621 ~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~------~~~vr~~a~~~l 693 (1049)
.+. +.|...+.++|.++...+..|.+|++.++-.+....+ ++ -.+.|+.+...+
T Consensus 694 ----------------~~R---~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~v 754 (858)
T COG5215 694 ----------------THR---DLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQLV 754 (858)
T ss_pred ----------------hcc---ccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHHH
Confidence 000 2688999999999999999999999999877766533 11 134466555533
Q ss_pred HHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHhhhCCh--HHHHHHHHHHHHHHHHHhCCcccHHHH
Q 001584 694 KNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDD--KDVVAQACTSIVEIINDYGYMAVEPYM 761 (1049)
Q Consensus 694 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~l~~~i~~~g~~~~~~~~ 761 (1049)
..++.++..+..+.+..+.+++..++..+-... +++. ......++..++++...+|.+.++.++
T Consensus 755 ---~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~ia-eDp~~se~~traalGLigDla~mfpkgelk~~~ 820 (858)
T COG5215 755 ---NCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIA-EDPNGSEAHTRAALGLIGDLAGMFPKGELKFGL 820 (858)
T ss_pred ---HHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhh-cCCccchhHHHHHHHHHHHHHHhCCCcchhhcc
Confidence 233333322223344556666666666654432 3222 222347888999999999987665543
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5e-37 Score=340.86 Aligned_cols=852 Identities=17% Similarity=0.224 Sum_probs=590.2
Q ss_pred cCCCHHHHHHHHHHHHHHhc--C---C-----CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHH
Q 001584 13 LMPDNDARRQAEDQIKRLAK--D---P-----QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQS 82 (1049)
Q Consensus 13 ~s~d~~~r~~a~~~L~~~~~--~---p-----~~~~~l~~il~~~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ 82 (1049)
.++|+++|+-|.-.+..+.. . + ..-..++.++++.+.+.+|+--+-..-...++. ++ +...++.+.
T Consensus 47 ~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~---l~-e~WPell~~ 122 (1075)
T KOG2171|consen 47 TSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARND---LP-EKWPELLQF 122 (1075)
T ss_pred cCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhc---cc-cchHHHHHH
Confidence 36799999999988866532 1 1 234567888887788888865543332222111 11 244566777
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhccCCC--CCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhh--h----ccc
Q 001584 83 LIESITLEHSAPVRRASANVVSIIAKYAVPA--GEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG--Q----TFR 154 (1049)
Q Consensus 83 ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~--~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~--~----~~~ 154 (1049)
|+++..+ +++..|..+-.++..+....... ...+++.+.+.+.+++++..+|..|+++++.++.... . .+.
T Consensus 123 L~q~~~S-~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~ 201 (1075)
T KOG2171|consen 123 LFQSTKS-PNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR 201 (1075)
T ss_pred HHHHhcC-CCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 8888886 89999999999998877643221 2456888999999998877799999999999998774 2 233
Q ss_pred ccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcC--CHHHHHHHHHHHHH
Q 001584 155 PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASG--EEDVAVIAFEIFDE 232 (1049)
Q Consensus 155 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~--~~~~~~~~~~~l~~ 232 (1049)
..+|.++..+...+.+ .+...-..++.+|..++...+. -+.+++..+++.......+. ++..|..|++++..
T Consensus 202 ~llP~~l~vl~~~i~~-~d~~~a~~~l~~l~El~e~~pk-----~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs 275 (1075)
T KOG2171|consen 202 DLLPSLLNVLQEVIQD-GDDDAAKSALEALIELLESEPK-----LLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVS 275 (1075)
T ss_pred HHhHHHHHHhHhhhhc-cchHHHHHHHHHHHHHHhhchH-----HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3445555556666666 6666777888888888776532 25666677777766665543 56789999999999
Q ss_pred HhccCCcch---hhhHHHHHHHHHHhhhCC----------CCC----hHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHH
Q 001584 233 LIESPAPLL---GDSVKSIVHFSLEVSSSH----------NLE----PNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQ 295 (1049)
Q Consensus 233 l~~~~~~~~---~~~~~~l~~~l~~~~~~~----------~~~----~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~ 295 (1049)
+++..|... .+..+.++..++..+... +.+ +.....|.+.+..++..-+ ....++++++
T Consensus 276 ~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~----g~~v~p~~~~ 351 (1075)
T KOG2171|consen 276 LSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLG----GKQVLPPLFE 351 (1075)
T ss_pred HHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCC----hhhehHHHHH
Confidence 988743322 223344444444333211 111 1234455666666654322 1124455666
Q ss_pred HHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc---hhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHH
Q 001584 296 VMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA---KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWM 372 (1049)
Q Consensus 296 ~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~---~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~ 372 (1049)
.+-.++... +|..|.++..+++.++.+.+ ...+|.+++.+.+.++++++++|+||+.++|+++......+
T Consensus 352 ~l~~~l~S~-------~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 352 ALEAMLQST-------EWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred HHHHHhcCC-------CHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence 655555543 47889999999999999888 45678999999999999999999999999999999988777
Q ss_pred HHh-HHHHHHHHHhhcCC-CChhHHHHHHHHHHHhHhhhcH-HHHhhhhhHHHHH-HHhccCCChHHHHHHHHHHHHHHH
Q 001584 373 KEK-LESVLHIVLGALRD-PEQFVRGAASFALGQFAEYLQP-EIVSHYESVLPCI-LNALEDESDEVKEKSYYALAAFCE 448 (1049)
Q Consensus 373 ~~~-l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~ll~~l-~~~l~~~~~~v~~~a~~~l~~l~~ 448 (1049)
.++ -..+.+.+...+.+ .+++|+..|+.++-.+++.+.. .+.+|++.++... ...+++..+.||+.++.+++.++.
T Consensus 425 qk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 425 QKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 665 45556688888876 5789999999999999887754 5688999999954 455566678999999999999999
Q ss_pred hhccccccchHHHHHHHHHhhcCCC----HhHHHHHHHHHHHHHHHhh-hhccccHHHHHHHHHHHHhccChhhhhhHHH
Q 001584 449 DMGEEILPFLDPLMGKLLAALENSP----RNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFMVLTNDEDLRSRAR 523 (1049)
Q Consensus 449 ~~~~~l~~~~~~ll~~l~~~l~~~~----~~v~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~ 523 (1049)
...+.+.||++.+|+.|.+.+...+ ..+|...++|++.++.++| +.|.++..+++..+.......-+.+..+|..
T Consensus 505 AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy 584 (1075)
T KOG2171|consen 505 AAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSY 584 (1075)
T ss_pred HHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHH
Confidence 9999999999999999999998754 5588999999999999998 7899999999999888764333334457888
Q ss_pred HHHHHHHHHHhhchhccccchHHHHHHHHhccCC------------------CCch------------------hhHHHH
Q 001584 524 ATELLGLVAESVGRARMEPILPPFVEAAISGFGL------------------EFSE------------------LREYTH 567 (1049)
Q Consensus 524 a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~------------------~~~~------------------~r~~~~ 567 (1049)
.+...+.+|+..|+ .|.|+++.+|..++...+. ++|+ =+..++
T Consensus 585 ~~~~warmc~ilg~-~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~ 663 (1075)
T KOG2171|consen 585 MIAFWARMCRILGD-DFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETAC 663 (1075)
T ss_pred HHHHHHHHHHHhch-hhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHH
Confidence 89999999999986 8999999999988765430 1121 156788
Q ss_pred HHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCchhhhccCCCCCCCcchhhcccccceeeeccchhhHHH
Q 001584 568 GFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAA 647 (1049)
Q Consensus 568 ~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~ 647 (1049)
.+++.++..++..|.||+.++++..+..+.... +. .+|.+
T Consensus 664 ~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~f-------------------------------------hd---gVR~a 703 (1075)
T KOG2171|consen 664 EALGEYAKELKEAFAPYVEQVVELMVPLLKFYF-------------------------------------HD---GVRKA 703 (1075)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhh-------------------------------------hh---HHHHH
Confidence 899999999999999999999995454443111 11 16788
Q ss_pred HHHHHHHHHHHhhh---hchhhHHHHHHHHHhh----hc-CCChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHH
Q 001584 648 ATQALGLFALHTKS---SYAPFLEESLKILVRH----AS-YFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILD 719 (1049)
Q Consensus 648 a~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~----~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 719 (1049)
|+.++..+...... ....|+..++..+.+. +. .+..++-.+..+++...++.++.. .-.++..+....
T Consensus 704 a~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~----~L~~~~~~~~~~ 779 (1075)
T KOG2171|consen 704 AAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDN----CLNEDGLEALLG 779 (1075)
T ss_pred HHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcc----cCCcHHHHHHHH
Confidence 88888887665433 2223566666655543 22 344455555555555555554421 111222333333
Q ss_pred HHHHHHHHHhh---------hC--C-----------hHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhhhh
Q 001584 720 TVMNIFIRTMT---------ED--D-----------DKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREEST 777 (1049)
Q Consensus 720 ~~~~~l~~~l~---------~~--~-----------~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 777 (1049)
.+...+..... .+ . |......+.+.+..+.+..+ +.+.+.+..+.+.+...+.++.+
T Consensus 780 ~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k-~~f~p~f~~~~p~iv~~l~~~~~ 858 (1075)
T KOG2171|consen 780 GLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALK-GSFLPFFENFLPLIVKLLKSKKT 858 (1075)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHcc-ccccHHHHHHHHHHHHHHhcCCc
Confidence 33333222221 00 0 11112233333344444444 56667888888888887776542
Q ss_pred hcCCCCCCCCCccccchhhHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhccCCCcccchhhhHhHHHHHhhcC
Q 001584 778 CQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMG 857 (1049)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~ 857 (1049)
. + ..-+.-+++.++...|+...+|++.++|.+..++.+.++ ++|+.|...+|.++++.|
T Consensus 859 ~---------------~-----r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~p-EVRqaAsYGiGvlaq~~g 917 (1075)
T KOG2171|consen 859 V---------------A-----RQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDP-EVRQAAAYGMGVLAQFGG 917 (1075)
T ss_pred H---------------H-----HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHcC
Confidence 1 2 123344567777788999999999999999999998764 899999999999999999
Q ss_pred CchhhcHhhhHHHHHHhcCCCC------hHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCCCCCChhHHhhHHH
Q 001584 858 SPIAAYVDRVMPLVLKELASPD------AMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAG 931 (1049)
Q Consensus 858 ~~~~~~~~~i~~~l~~~l~~~~------~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~a~~ 931 (1049)
....+.+...+|.+...++.++ .....||+.+++.++.+.+.... +++++..+...+...++.+. ......
T Consensus 918 ~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~--vdqvl~~~l~~LPl~~D~eE-a~~iy~ 994 (1075)
T KOG2171|consen 918 EDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRIP--VDQVLPAWLSWLPLKEDKEE-AVPIYT 994 (1075)
T ss_pred cchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCc--HHHHHHHHHHhCCCccchhh-hhhHHH
Confidence 9988888888888888877543 34788999999999999987663 77888777777754332221 223456
Q ss_pred HHHHHHHhCCCCC--ChhhHHHHHHhh
Q 001584 932 AVARMIMVNPQSI--PLNQVLPVLLKV 956 (1049)
Q Consensus 932 ~l~~i~~~~~~~~--~~~~~l~~~l~~ 956 (1049)
.++.++..++..+ |-++.+|.++..
T Consensus 995 ~l~~L~e~n~p~v~~~~n~~ip~i~~v 1021 (1075)
T KOG2171|consen 995 FLSDLYESNHPIVLGPNNQNIPKILSV 1021 (1075)
T ss_pred HHHHHHHhCCCeeeCCCcccchHHHHH
Confidence 6777777654433 344555555543
No 6
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-36 Score=313.64 Aligned_cols=723 Identities=16% Similarity=0.185 Sum_probs=523.8
Q ss_pred hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhhhC-CCCChHHHHHHHHHHHHHHhhhH
Q 001584 203 FIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSS-HNLEPNTRHQAIQIISWLAKYKY 281 (1049)
Q Consensus 203 ~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~r~~a~~~l~~l~~~~~ 281 (1049)
.+..+.+.+++. .+++.+++..+.+.+.++-. .|. +.+++.-++.+ ++.+..+|..|--++..-+..+.
T Consensus 11 ~l~ql~~lLk~s-~Spn~~~~~~~~~~leq~~~-~pd--------fnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~ 80 (885)
T KOG2023|consen 11 GLQQLAQLLKNS-QSPNSETRNNVQEKLEQFNL-FPD--------FNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHY 80 (885)
T ss_pred HHHHHHHHHHhc-cCCChHHHHHHHHHHHHHhc-ccc--------hhceeeEEEecccccchhHHHHhhhhHhccccccc
Confidence 345566666655 35677888888877776554 222 22222222222 23355666665444443332211
Q ss_pred hhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHH
Q 001584 282 NSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAI 361 (1049)
Q Consensus 282 ~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l 361 (1049)
..+.. +-..-+...++.-+.+.+. -.|...+..+..++...+-..||.++|.+.+.+.+++....++|+.+|
T Consensus 81 ~~~~~-~~~~yiKs~~l~~lgd~~~-------lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL 152 (885)
T KOG2023|consen 81 NSIPS-EVLDYIKSECLHGLGDASP-------LIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGAL 152 (885)
T ss_pred cCCCh-HHHHHHHHHHHhhccCchH-------HHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHH
Confidence 11111 1111133344444444332 567777777778887777778999999999999999999999999999
Q ss_pred HHHhhcChHHHHH-----hHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHH
Q 001584 362 GIISEGCAEWMKE-----KLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVK 436 (1049)
Q Consensus 362 ~~i~~~~~~~~~~-----~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~ 436 (1049)
..|+|...+.+.. -++-++|.+++.+++++|.+|.-|..|+.++.-.....+..+++..+..++..-+|+++.||
T Consensus 153 ~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVR 232 (885)
T KOG2023|consen 153 QKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVR 232 (885)
T ss_pred HHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHH
Confidence 9999987665543 36778999999999999999999999999998877777777888999999988899999999
Q ss_pred HHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHh--hhhccccHHHHHHHHHHHHhc--
Q 001584 437 EKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAA--EQAFIPYAERVLELLKIFMVL-- 512 (1049)
Q Consensus 437 ~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~--~~~~~~~~~~~~~~l~~~l~~-- 512 (1049)
...|.++.-+.+.-++.+.|+++.+++.++...++.+..|.-.|.++|-++++.. ++.+.||+++++|.|.+-+.-
T Consensus 233 k~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd 312 (885)
T KOG2023|consen 233 KNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSD 312 (885)
T ss_pred HHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCcccc
Confidence 9999999999999999999999999999999999999999999999999999754 467789999999988764321
Q ss_pred ---------cC--------------------------------hh----------hhhhHHHHHHHHHHHHHhhchhccc
Q 001584 513 ---------TN--------------------------------DE----------DLRSRARATELLGLVAESVGRARME 541 (1049)
Q Consensus 513 ---------~~--------------------------------~~----------~~~~r~~a~~~l~~l~~~~~~~~~~ 541 (1049)
.+ ++ ++.+|..+..++..++...|.+.
T Consensus 313 ~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~el-- 390 (885)
T KOG2023|consen 313 DDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDEL-- 390 (885)
T ss_pred ccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHH--
Confidence 00 00 25577766778888887777533
Q ss_pred cchHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCchhhhccCCCCC
Q 001584 542 PILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVS 621 (1049)
Q Consensus 542 ~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (1049)
++.+++.+-+.+.++.|.+|++...++|.|++++-..|.||+|.++|.+++.+.....
T Consensus 391 --L~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkp-------------------- 448 (885)
T KOG2023|consen 391 --LPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKP-------------------- 448 (885)
T ss_pred --HHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCcc--------------------
Confidence 4456666667777899999999999999999999999999999999999998852210
Q ss_pred CCcchhhcccccceeeeccchhhHHHHHHHHHHHHHHhhhh-chhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHH
Q 001584 622 SDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSS-YAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAA 700 (1049)
Q Consensus 622 ~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~ 700 (1049)
-+|...||+|+.++...-.. =..|+..++..+++.+-+.+..|+.+|+.++..+-+..
T Consensus 449 ---------------------lVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A 507 (885)
T KOG2023|consen 449 ---------------------LVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEA 507 (885)
T ss_pred ---------------------ceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence 04556799999998876332 23577777777777766788899999999998887653
Q ss_pred HHhhccCCCChHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHhCCcccHH-HHHHHHHHHHHHHHhhhhhc
Q 001584 701 HAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEP-YMSRLVDATLLLLREESTCQ 779 (1049)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~i~~~g~~~~~~-~~~~l~~~l~~~l~~~~~~~ 779 (1049)
+ ..+.+++..++..+..++.....++.+ -.+++++.+.+++|....++ |+..+++-++.-...-
T Consensus 508 ~----------~eLVp~l~~IL~~l~~af~kYQ~KNLl-ILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~l---- 572 (885)
T KOG2023|consen 508 G----------EELVPYLEYILDQLVFAFGKYQKKNLL-ILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELL---- 572 (885)
T ss_pred c----------chhHHHHHHHHHHHHHHHHHHhhccee-hHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhc----
Confidence 3 346678889999998888776555543 57788888888888766554 6766666555333321
Q ss_pred CCCCCCCCCccccchhhHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhc--------cCC-------Ccccchh
Q 001584 780 QPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAK--------SSR-------PLQDRTM 844 (1049)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~--------~~~-------~~~~r~~ 844 (1049)
++.+..++ ...+|+++++.++|..|.||.+..+...++.++ ... .......
T Consensus 573 -------------sd~DKdLf-PLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~ 638 (885)
T KOG2023|consen 573 -------------SDSDKDLF-PLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIV 638 (885)
T ss_pred -------------CcccchHH-HHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEE
Confidence 11222344 788999999999999999987766665554443 111 1223457
Q ss_pred hhHhHHHHHhhcCCchhhcH--hhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCCCCCC
Q 001584 845 VVATLAEVARDMGSPIAAYV--DRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPD 922 (1049)
Q Consensus 845 a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~ 922 (1049)
++..++-+++.+|..+.+.+ ..++..++++++|.-++||+.|..-+|.+++...+++.|+...++..+-.-+ ..++
T Consensus 639 sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl--~~~~ 716 (885)
T KOG2023|consen 639 SLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANL--NPEN 716 (885)
T ss_pred eHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcC--Chhh
Confidence 89999999999999888754 5799999999999999999999999999999999999999999988775322 3456
Q ss_pred hhHHhhHHHHHHHHHHhC-CCCCC-hhhHHHHHHhhCCC-CCcHHhhHHHHHHHHHHHhhCChhhcchhhHHHHHHHHHh
Q 001584 923 DAVRDNAAGAVARMIMVN-PQSIP-LNQVLPVLLKVLPL-KEDFEESMAVYNCISTLVLSSNPQILSLVPELVNLFAEVV 999 (1049)
Q Consensus 923 ~~~~~~a~~~l~~i~~~~-~~~~~-~~~~l~~~l~~lp~-~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~ 999 (1049)
-.+..||+.|+|.|...- ....| +..++..+...+.- ..+..-..+..-.+..+-...+..+.++++..++.....+
T Consensus 717 isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl 796 (885)
T KOG2023|consen 717 ISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSL 796 (885)
T ss_pred chHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHh
Confidence 789999999999998753 22223 34444444333221 1222333333344555544456667789999998888877
Q ss_pred cCCCCChHHHHHHHHHHHHH
Q 001584 1000 VSPEESSEVKSQVGMAFSHL 1019 (1049)
Q Consensus 1000 ~~~~~~~~~~~~~~~~l~~l 1019 (1049)
..-..++|--.++.++..-+
T Consensus 797 ~~i~DneEK~sAFrG~c~mi 816 (885)
T KOG2023|consen 797 RNIDDNEEKESAFRGLCNMI 816 (885)
T ss_pred cccccchhHHHHHHHHHHhe
Confidence 76545555555555555433
No 7
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-34 Score=302.13 Aligned_cols=740 Identities=16% Similarity=0.214 Sum_probs=534.5
Q ss_pred cCCHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHH-HHHHhhhHhhhhh--cCCh---
Q 001584 217 SGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQII-SWLAKYKYNSLKK--HKLV--- 290 (1049)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l-~~l~~~~~~~~~~--~~~~--- 290 (1049)
++|..+++.+-+.|.++.. ..++.++..+.+++.+....+..|..|--.+ ..+....+..-.. +.++
T Consensus 12 SpD~n~~~~Ae~~l~~~~~-------~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~ 84 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQS-------QNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLP 84 (859)
T ss_pred CCCcchHHHHHHHHHHHHh-------ccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCC
Confidence 4555666666666666553 3445555555566655555566666543222 2333222211000 0000
Q ss_pred ----HHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHH-HcchhchHHHHHHHHhhhcCCCh-hHHhHHHHHHHHH
Q 001584 291 ----IPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMAL-NLAKHVFPPVFEFASVSCQNASP-KYREAAVTAIGII 364 (1049)
Q Consensus 291 ----~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~-~~~~~~~~~ll~~l~~~l~~~~~-~~r~~al~~l~~i 364 (1049)
..+...++..|..+.. .....|++++..++. .+|...||.+++.+..+..+... ..|++++.++|++
T Consensus 85 ~e~reqVK~~il~tL~~~ep-------~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyi 157 (859)
T KOG1241|consen 85 AEIREQVKNNILRTLGSPEP-------RRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYI 157 (859)
T ss_pred HHHHHHHHHHHHHHcCCCCC-------CccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 1233444555554433 556788899988875 67889999999999888776555 4999999999999
Q ss_pred hhcC-hHHHHHhHHHHHHHHHhhcC--CCChhHHHHHHHHHHHhHhhhcHHHHh--hhhhHHHHHHHhccCCChHHHHHH
Q 001584 365 SEGC-AEWMKEKLESVLHIVLGALR--DPEQFVRGAASFALGQFAEYLQPEIVS--HYESVLPCILNALEDESDEVKEKS 439 (1049)
Q Consensus 365 ~~~~-~~~~~~~l~~i~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~~ll~~l~~~l~~~~~~v~~~a 439 (1049)
++.. ++.+..+.+.++..++.+++ .++..||.+|..+|-.-.+..+..+.. ..+-++..+++.-+.++.+|+.+|
T Consensus 158 ce~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa 237 (859)
T KOG1241|consen 158 CEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAA 237 (859)
T ss_pred HccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHH
Confidence 9985 45666778899999999987 578899999999999887776654432 123488888999999999999999
Q ss_pred HHHHHHHHHhhccccccchHH-HHHHHHHhhcCCCHhHHHHHHHHHHHHHHH-------hhhhccccH------------
Q 001584 440 YYALAAFCEDMGEEILPFLDP-LMGKLLAALENSPRNLQETCMSAIGSVAAA-------AEQAFIPYA------------ 499 (1049)
Q Consensus 440 ~~~l~~l~~~~~~~l~~~~~~-ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~-------~~~~~~~~~------------ 499 (1049)
..||..+..-+.+.+.+|+.+ ++......+.+.+++|..++++.|+++++. .++.+..+.
T Consensus 238 ~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~ 317 (859)
T KOG1241|consen 238 FQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQAL 317 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHH
Confidence 999999999999999999987 888888889999999999999999998863 122222222
Q ss_pred HHHHHHHHHHHhcc----ChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCCCchhhHHHHHHHHHHHH
Q 001584 500 ERVLELLKIFMVLT----NDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAG 575 (1049)
Q Consensus 500 ~~~~~~l~~~l~~~----~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~ 575 (1049)
..++|.|.+.+... +++++.....|-.|+..+++.+|.+ +.|++ ++.+-+.+++++|+-|+.+..+||++..
T Consensus 318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~-Iv~~V---l~Fiee~i~~pdwr~reaavmAFGSIl~ 393 (859)
T KOG1241|consen 318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD-IVPHV---LPFIEENIQNPDWRNREAAVMAFGSILE 393 (859)
T ss_pred hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc-chhhh---HHHHHHhcCCcchhhhhHHHHHHHhhhc
Confidence 24889998888752 2334556556789999999999864 44433 3334456889999999999999999998
Q ss_pred Hcc-cCccCchhhhhHHHHhhccCCCCCccCCCCCchhhhccCCCCCCCcchhhcccccceeeeccchhhHHHHHHHHHH
Q 001584 576 VLE-DGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGL 654 (1049)
Q Consensus 576 ~~~-~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~ 654 (1049)
... ....|+.++.+|.++..+. |+ .+.+|..+-|++|.
T Consensus 394 gp~~~~Lt~iV~qalp~ii~lm~-D~----------------------------------------sl~VkdTaAwtlgr 432 (859)
T KOG1241|consen 394 GPEPDKLTPIVIQALPSIINLMS-DP----------------------------------------SLWVKDTAAWTLGR 432 (859)
T ss_pred CCchhhhhHHHhhhhHHHHHHhc-Cc----------------------------------------hhhhcchHHHHHHH
Confidence 765 5688899999999998765 21 11367888999999
Q ss_pred HHHHhhhhchh--hHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHhhhC
Q 001584 655 FALHTKSSYAP--FLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTED 732 (1049)
Q Consensus 655 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 732 (1049)
+++.+++...+ +....+..++..+.+ .+.+-..++.++..+.+++.+.....+ ..+...+++..++..|++.....
T Consensus 433 I~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~-qt~~~t~~y~~ii~~Ll~~tdr~ 510 (859)
T KOG1241|consen 433 IADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNG-QTDPATPFYEAIIGSLLKVTDRA 510 (859)
T ss_pred HHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCC-CCCccchhHHHHHHHHHhhcccc
Confidence 99988765543 455666666554443 345666788888888887766544331 12233478888999998876542
Q ss_pred --ChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhHHHHHHHHhHHHHH
Q 001584 733 --DDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAF 810 (1049)
Q Consensus 733 --~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 810 (1049)
.+.+.+.+++++|.++++.....+ -+....+...+..-|......+.- + .+| .+.-..+....+.+|+.+
T Consensus 511 dgnqsNLR~AAYeALmElIk~st~~v-y~~v~~~~l~il~kl~q~i~~~~l-~---~~d---r~q~~eLQs~Lc~~Lq~i 582 (859)
T KOG1241|consen 511 DGNQSNLRSAAYEALMELIKNSTDDV-YPMVQKLTLVILEKLDQTISSQIL-S---LAD---RAQLNELQSLLCNTLQSI 582 (859)
T ss_pred ccchhhHHHHHHHHHHHHHHcCcHHH-HHHHHHHHHHHHHHHHHHHHHHhc-c---Hhh---HHHHHHHHHHHHHHHHHH
Confidence 356788899999999998655322 122222222222211111110100 0 000 112223455677788999
Q ss_pred HHHhCCChHHHHHHHHHHHHHhhccCCCcccchhhhHhHHHHHhhcCCchhhcHhhhHHHHHHhcCCC-ChHhHHHHHHH
Q 001584 811 AKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASP-DAMNRRNAAFC 889 (1049)
Q Consensus 811 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~vr~~a~~~ 889 (1049)
.+..|..+.++.++++..+++.++...+..+...|+..++.++.++|..+..|.+.+.|.+..+|++. +..|...|...
T Consensus 583 ~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVgl 662 (859)
T KOG1241|consen 583 IRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGL 662 (859)
T ss_pred HHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 99999999999999999999999886666678899999999999999999999999999999999654 57799999999
Q ss_pred HHHHHhhcCcchhhHHHHHHHhhhhhhCCCCCChhHHhhHHHHHHHHHHhCCCCC-C-hhhHHHHHHhhC---CCCCcH-
Q 001584 890 VGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSI-P-LNQVLPVLLKVL---PLKEDF- 963 (1049)
Q Consensus 890 lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~-~-~~~~l~~~l~~l---p~~~d~- 963 (1049)
+|+++...++.|.||...++..|.+.++.+.-++.+.-...+++|-|...-...+ | ++.+++.+...- +-..|+
T Consensus 663 Vgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~ 742 (859)
T KOG1241|consen 663 VGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDS 742 (859)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCccc
Confidence 9999999999999999999999999998776677888888999999887644433 3 677777665433 112111
Q ss_pred ---------HhhHHHHHHHHHHHhh--CChhhcchhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhh
Q 001584 964 ---------EESMAVYNCISTLVLS--SNPQILSLVPELVNLFAEVVVSPEESSEVKSQVGMAFSHLISLYGQ 1025 (1049)
Q Consensus 964 ---------~e~~~~~~~l~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 1025 (1049)
+....+|.++.+.++. ....+++++++|+.++..+...+..++.+-....++|++|...||+
T Consensus 743 ~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~ 815 (859)
T KOG1241|consen 743 MVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGK 815 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHccc
Confidence 2245578999998874 2346779999999999999888777788999999999999999984
No 8
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=2.8e-32 Score=292.36 Aligned_cols=962 Identities=16% Similarity=0.173 Sum_probs=627.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHH-HHHhcC---------CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhccCCCHHHH
Q 001584 7 LLLIQFLMPDNDARRQAEDQI-KRLAKD---------PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLK 76 (1049)
Q Consensus 7 ~ll~~~~s~d~~~r~~a~~~L-~~~~~~---------p~~~~~l~~il~~~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~ 76 (1049)
+++..+.|+|.+.|-.|+..| .+++++ +..+..+++.+. +.+.+|+.+|..-+.-.. +++.++..
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~-D~ngEVQnlAVKClg~lv----sKvke~~l 83 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLE-DKNGEVQNLAVKCLGPLV----SKVKEDQL 83 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHh-ccCcHHHHHHHHHHHHHH----hhchHHHH
Confidence 889999999999999999999 567643 345777888775 668899999987666555 45667788
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCC-------CCCcchHHHHHHhccCC--CHHHHHHHHHHHHHhhh
Q 001584 77 QLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA-------GEWPDLLPFLFQFSQSE--QEEHREVALILFSSLTE 147 (1049)
Q Consensus 77 ~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~-------~~w~~ll~~l~~~l~~~--~~~~~~~al~~l~~l~~ 147 (1049)
+.+.+.|...+.+ .....|...+-.+..+....-|. ...+.+.|.+.+.+... ....+..++.+++.+..
T Consensus 84 e~~ve~L~~~~~s-~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 84 ETIVENLCSNMLS-GKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred HHHHHHHhhhhcc-chhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 8888888888775 34555555555555544333221 12345555665555432 23467788888888888
Q ss_pred hhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHH
Q 001584 148 TIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAF 227 (1049)
Q Consensus 148 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~ 227 (1049)
.++..+.++...+...+..-+.+ +...||+.|+.+++.++.+.+.. .+..++..++..+. ...++....--+
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s-~R~aVrKkai~~l~~la~~~~~~----ly~~li~~Ll~~L~---~~~q~~~~rt~I 234 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQS-PRLAVRKKAITALGHLASSCNRD----LYVELIEHLLKGLS---NRTQMSATRTYI 234 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccC-hHHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHhccC---CCCchHHHHHHH
Confidence 88887777777788888777887 78889999999999999988532 23444444444332 224555566677
Q ss_pred HHHHHHhccCCcchhhhHHHHHHHHHHhhhC-CCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccC--
Q 001584 228 EIFDELIESPAPLLGDSVKSIVHFSLEVSSS-HNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAES-- 304 (1049)
Q Consensus 228 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~-- 304 (1049)
.++.++....+.-++.+++.+++++.+.+.. ...+++.|..+++.+..+..+.|..+.+ +.+.+++.++..+...
T Consensus 235 q~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p--~~pei~~l~l~yisYDPN 312 (1233)
T KOG1824|consen 235 QCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILP--HVPEIINLCLSYISYDPN 312 (1233)
T ss_pred HHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcc--cchHHHHHHHHHhccCCC
Confidence 8888888888888888988888888877732 2337899999999999999888876653 7778888888877521
Q ss_pred ----C-CC--------------------CCCCCCcHHHHHHHHHHHHHHHcc-------hhchHH---------------
Q 001584 305 ----N-EA--------------------GEDDDLAPDRAAAEVIDTMALNLA-------KHVFPP--------------- 337 (1049)
Q Consensus 305 ----~-~~--------------------~~d~~~~~~~~a~~~l~~l~~~~~-------~~~~~~--------------- 337 (1049)
+ +| |||-.|-+|++|++|+..+..... ..+-|.
T Consensus 313 y~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~d 392 (1233)
T KOG1824|consen 313 YNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKAD 392 (1233)
T ss_pred CCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHH
Confidence 0 10 111137899999999877653211 000011
Q ss_pred -------------------------------------------HHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHH
Q 001584 338 -------------------------------------------VFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKE 374 (1049)
Q Consensus 338 -------------------------------------------ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~ 374 (1049)
++..+...+++..-+.|.+++..|..+....+....+
T Consensus 393 vf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~ 472 (1233)
T KOG1824|consen 393 VFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQ 472 (1233)
T ss_pred HHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhh
Confidence 1111222222222334556666666666667777778
Q ss_pred hHHHHHHHHHhhcCCCC--hhHHHHHHHHHHHh-HhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhc
Q 001584 375 KLESVLHIVLGALRDPE--QFVRGAASFALGQF-AEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG 451 (1049)
Q Consensus 375 ~l~~i~~~l~~~l~d~~--~~vr~~a~~~l~~l-~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 451 (1049)
+++.++|.+...++|.+ ...+..++..+... +.+.++.+.++++.+.|.+..+..++-..+...|+.....+++...
T Consensus 473 ~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvir 552 (1233)
T KOG1824|consen 473 HIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIR 552 (1233)
T ss_pred cccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhc
Confidence 89999999999999854 34555666555544 4444556788999999999999999999999999988888888763
Q ss_pred c-------ccccchHHHHHHHHHhhcC--CCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhccChhhhhhHH
Q 001584 452 E-------EILPFLDPLMGKLLAALEN--SPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRA 522 (1049)
Q Consensus 452 ~-------~l~~~~~~ll~~l~~~l~~--~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~ 522 (1049)
+ ...||+..++....+.+.. .+.+||+.++.|+|.+....|+.....++.++|.+.+-+.++ -.|-
T Consensus 553 pl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE-----iTRl 627 (1233)
T KOG1824|consen 553 PLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE-----ITRL 627 (1233)
T ss_pred ccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch-----hHHH
Confidence 2 3568999999998888765 578999999999999999999888888899999988877643 2466
Q ss_pred HHHHHHHHHHHhhchhccccchHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCch-hhhhHHHHhhccCCCC
Q 001584 523 RATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYL-PLVVPLAFSSCNLDDG 601 (1049)
Q Consensus 523 ~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l-~~i~~~ll~~~~~~~~ 601 (1049)
.|+.++..|+.+.-.-...+.+..+++.+...+....+.+|.....++..+++.++..+.+++ ..++..+...+...+-
T Consensus 628 ~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdl 707 (1233)
T KOG1824|consen 628 TAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDL 707 (1233)
T ss_pred HHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHH
Confidence 778888888876533345677778888777766655677899999999999999998887774 3333333333321100
Q ss_pred CccCCCCCchhhhccCCCCCCCcc-hhhccccc-ce-eeeccchhh----------------------------------
Q 001584 602 SAVDIDGSDDENINGFGGVSSDDE-AHCERSVR-NI-SVRTGVLDE---------------------------------- 644 (1049)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~-~i~~~~~~~---------------------------------- 644 (1049)
. ..+..-.............. ...++-+. .+ -++++.++.
T Consensus 708 h---vt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV 784 (1233)
T KOG1824|consen 708 H---VTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPV 784 (1233)
T ss_pred H---HHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCc
Confidence 0 00000000000000000000 00000000 00 011111100
Q ss_pred --------HHHHHHHHHHH----HHHhhhh------------chh------------------------hHHHHHHHHHh
Q 001584 645 --------KAAATQALGLF----ALHTKSS------------YAP------------------------FLEESLKILVR 676 (1049)
Q Consensus 645 --------k~~a~~~l~~~----~~~~~~~------------~~~------------------------~~~~~~~~l~~ 676 (1049)
...|...++.. ...++.. ..| +...+-..++.
T Consensus 785 ~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iie 864 (1233)
T KOG1824|consen 785 YEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIE 864 (1233)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHH
Confidence 00111111111 1111100 000 01111122233
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHhCCcc
Q 001584 677 HASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMA 756 (1049)
Q Consensus 677 ~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~i~~~g~~~ 756 (1049)
.+++++++|+.+|..+|+.+.. ..+..|++. ++..+..++.+. .-.++++.+++.......
T Consensus 865 af~sp~edvksAAs~ALGsl~v-------------gnl~~yLpf----il~qi~sqpk~Q--yLLLhSlkevi~~~svd~ 925 (1233)
T KOG1824|consen 865 AFNSPSEDVKSAASYALGSLAV-------------GNLPKYLPF----ILEQIESQPKRQ--YLLLHSLKEVIVSASVDG 925 (1233)
T ss_pred HcCCChHHHHHHHHHHhhhhhc-------------CchHhHHHH----HHHHHhcchHhH--HHHHHHHHHHHHHhccch
Confidence 3344455555555555554421 112333333 333344443333 346778888877655444
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhccC
Q 001584 757 VEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSS 836 (1049)
Q Consensus 757 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 836 (1049)
+.++.+.| +.+|.++..| .++..+..+++|+|.++-.-+ +.++|.+-..+.++
T Consensus 926 ~~~~v~~I----W~lL~k~cE~----------------~eegtR~vvAECLGkL~l~ep-------esLlpkL~~~~~S~ 978 (1233)
T KOG1824|consen 926 LKPYVEKI----WALLFKHCEC----------------AEEGTRNVVAECLGKLVLIEP-------ESLLPKLKLLLRSE 978 (1233)
T ss_pred hhhhHHHH----HHHHHHhccc----------------chhhhHHHHHHHhhhHHhCCh-------HHHHHHHHHHhcCC
Confidence 45555554 4444444322 222336678999998876533 36778777777766
Q ss_pred CCcccchhhhHhHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhh
Q 001584 837 RPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLF 916 (1049)
Q Consensus 837 ~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l 916 (1049)
.+ ..|..++.++-..+..-+..+.+++.+.+..++..++|+|..||+.|..++...+.+.+.-++..++++++.|+.--
T Consensus 979 a~-~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eT 1057 (1233)
T KOG1824|consen 979 AS-NTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSET 1057 (1233)
T ss_pred Cc-chhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhh
Confidence 55 56888888888777666666888999999999999999999999999999999999988888888888888877543
Q ss_pred CCC----------------CCChhHHhhHHHHHHHHHHhCCCCCChhhHHHHHHhhCCCCCcHHhhHHHHHHHHHHHhhC
Q 001584 917 GDS----------------EPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSS 980 (1049)
Q Consensus 917 ~~~----------------~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~ 980 (1049)
..+ ++.-++|..|..|+..++..+-+.+++.+|+......|. ...+.+...|..+..+....
T Consensus 1058 kvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL~--DhydiKmlt~l~l~rLa~lc 1135 (1233)
T KOG1824|consen 1058 KVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVEDGLE--DHYDIKMLTFLMLARLADLC 1135 (1233)
T ss_pred hhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHHhhC
Confidence 321 122368999999999999998888888888886666663 22345566688888888888
Q ss_pred ChhhcchhhHHHHHHHHHhcCCC----------CChHHHHHHHHHHHHHHH----HhhhhHHHHHhcC--CHHHHHH
Q 001584 981 NPQILSLVPELVNLFAEVVVSPE----------ESSEVKSQVGMAFSHLIS----LYGQQMQPLLSNL--SPAHATA 1041 (1049)
Q Consensus 981 ~~~~~~~~~~i~~~~~~~~~~~~----------~~~~~~~~~~~~l~~l~~----~~~~~~~~~~~~l--~~~~~~~ 1041 (1049)
|..+.+.+.++++.+......+. ..+|+++.+.+.+..+.+ ...++|..+.+++ +||.-+.
T Consensus 1136 Ps~VlqrlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~~ip~v~~np~~~df~sqik~~pel~~~ 1212 (1233)
T KOG1824|consen 1136 PSAVLQRLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVAALLTIPEVEKNPQFSDFESQIKSNPELAAI 1212 (1233)
T ss_pred cHHHHHHHHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHhcccccccChHHHHHHHHhhcChhHHHH
Confidence 88899999999999988775321 136888888888888832 1335676666654 4444333
No 9
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-30 Score=281.69 Aligned_cols=667 Identities=19% Similarity=0.275 Sum_probs=448.3
Q ss_pred ChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCC-ChhHHHHHHHHHHHhhhhhccC---------
Q 001584 1 MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAK-TPNVRQLAAVLLRKKITGHWAK--------- 70 (1049)
Q Consensus 1 m~~~l~~ll~~~~s~d~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~-~~~~R~~a~~~l~~~i~~~w~~--------- 70 (1049)
|.+.+.+++.++.++|+..|+.||.+|+++++.|+|+..+++|+.++. +..+|+.|+++|||.|.+.|+.
T Consensus 2 d~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~ 81 (1010)
T KOG1991|consen 2 DLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFG 81 (1010)
T ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCC
Confidence 457799999999999999999999999999999999999999998765 7788999999999999999975
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhh
Q 001584 71 LSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG 150 (1049)
Q Consensus 71 ~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~ 150 (1049)
+.++.+..+|+.++..+.+ .+..+|.....++..|.+.++| ++||.+++.+...+++++.....+|+.|+..++....
T Consensus 82 I~e~dk~~irenIl~~iv~-~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye 159 (1010)
T KOG1991|consen 82 IPEEDKAVIRENILETIVQ-VPELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYE 159 (1010)
T ss_pred CChHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHh
Confidence 4789999999999999997 6888999999999999999999 6999999999999999999999999999999997643
Q ss_pred -----------hcccccHHHHHHHHHHhhCCCC--ChHHHHHHHHHHHHhhcccCChh--hHHHHHhhhHHHHHHHHHHh
Q 001584 151 -----------QTFRPHFADMQALLLKCLQDET--SNRVRIAALKAIGSFLEFTNDGA--EVVKFREFIPSILNVSRQCL 215 (1049)
Q Consensus 151 -----------~~~~~~~~~l~~~l~~~l~~~~--~~~vr~~a~~~l~~~~~~~~~~~--~~~~~~~~~~~ll~~l~~~l 215 (1049)
..+...++.+.+.+.+.+..++ +.......++.+..++.+.=... ....+..++...+.++.+-+
T Consensus 160 ~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpv 239 (1010)
T KOG1991|consen 160 WKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPV 239 (1010)
T ss_pred hccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCC
Confidence 2234566777777778777622 23344555555555443321110 11123333333333333222
Q ss_pred h----cCCHH---------HHHHHHHHHHHHhccCCc--------------chhhhHHHHHHHHHHhh----hCCCCChH
Q 001584 216 A----SGEED---------VAVIAFEIFDELIESPAP--------------LLGDSVKSIVHFSLEVS----SSHNLEPN 264 (1049)
Q Consensus 216 ~----~~~~~---------~~~~~~~~l~~l~~~~~~--------------~~~~~~~~l~~~l~~~~----~~~~~~~~ 264 (1049)
. .-+++ ..+.|+..+.++.+...+ ++....+.+++..+.+. .....+++
T Consensus 240 P~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~r 319 (1010)
T KOG1991|consen 240 PVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDR 319 (1010)
T ss_pred ChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 1 11233 356788888888765421 12233344444444333 22346788
Q ss_pred HHHHHHHHHHHHHhhhHhhhhh--cCChHHH-HHHHhhhhccCCCCCC-----------------CCCCcHHHHHHHHHH
Q 001584 265 TRHQAIQIISWLAKYKYNSLKK--HKLVIPI-LQVMCPLLAESNEAGE-----------------DDDLAPDRAAAEVID 324 (1049)
Q Consensus 265 ~r~~a~~~l~~l~~~~~~~~~~--~~~~~~i-l~~l~~~l~~~~~~~~-----------------d~~~~~~~~a~~~l~ 324 (1049)
+-..++.++..++..+. .++ .+.+..+ -..++|+|+-.++|.+ +|-.+++.+|..++.
T Consensus 320 vl~~~l~fl~~~Vs~~~--twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~ 397 (1010)
T KOG1991|consen 320 VLYYLLNFLEQCVSHAS--TWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLT 397 (1010)
T ss_pred HHHHHHHHHHHhccHHH--HHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHH
Confidence 88889999988875432 222 1222223 3567888887665432 244578889999999
Q ss_pred HHHHHcchhchHHHHHHHHhhhc--------CCChhHHhHHHHHHHHHhhcCh--HHHHHhHHH-HHHHHHhhcCCCChh
Q 001584 325 TMALNLAKHVFPPVFEFASVSCQ--------NASPKYREAAVTAIGIISEGCA--EWMKEKLES-VLHIVLGALRDPEQF 393 (1049)
Q Consensus 325 ~l~~~~~~~~~~~ll~~l~~~l~--------~~~~~~r~~al~~l~~i~~~~~--~~~~~~l~~-i~~~l~~~l~d~~~~ 393 (1049)
.++...|+..+|.+++++.+-+. ..+++.+++|+.++|.+++-.. ..++..++. +++++++.+++|.-.
T Consensus 398 ~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~ 477 (1010)
T KOG1991|consen 398 TLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGY 477 (1010)
T ss_pred HHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhH
Confidence 99999999999999999887765 2467899999999999997532 223344444 457889999999999
Q ss_pred HHHHHHHHHHHhH-hhhcHHHHhhhhhHHHHHHHhcc-CCChHHHHHHHHHHHHHHHhhc---cccccchHHHHHHHHHh
Q 001584 394 VRGAASFALGQFA-EYLQPEIVSHYESVLPCILNALE-DESDEVKEKSYYALAAFCEDMG---EEILPFLDPLMGKLLAA 468 (1049)
Q Consensus 394 vr~~a~~~l~~l~-~~~~~~~~~~~~~ll~~l~~~l~-~~~~~v~~~a~~~l~~l~~~~~---~~l~~~~~~ll~~l~~~ 468 (1049)
.|..|||.+++++ ..++. ...+...+....+++. |+.-.||..|+-||..|+.+.. +.+.++++.+++.++.+
T Consensus 478 Lrarac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L 555 (1010)
T KOG1991|consen 478 LRARACWVLSQFSSIDFKD--PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKL 555 (1010)
T ss_pred HHHHHHHHHHHHHhccCCC--hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHH
Confidence 9999999999999 45543 3455667777888887 6667899999999999999875 45889999999999999
Q ss_pred hcCCCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHH----Hhc-c----ChhhhhhHH-HHHHHHHHHHHhhc--
Q 001584 469 LENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIF----MVL-T----NDEDLRSRA-RATELLGLVAESVG-- 536 (1049)
Q Consensus 469 l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~----l~~-~----~~~~~~~r~-~a~~~l~~l~~~~~-- 536 (1049)
.+..+.+.-.. ++..++...++.+.||...+...|.+. +.. . ++++..+.+ ..+.+++.+..++.
T Consensus 556 ~ne~End~Lt~---vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~ 632 (1010)
T KOG1991|consen 556 SNEVENDDLTN---VMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENH 632 (1010)
T ss_pred HHhcchhHHHH---HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88765544333 444556677788899988766655443 332 1 111222211 11244444444443
Q ss_pred hhc---cccchHHHHHHHHhcc------------C---CCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccC
Q 001584 537 RAR---MEPILPPFVEAAISGF------------G---LEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNL 598 (1049)
Q Consensus 537 ~~~---~~~~~~~i~~~l~~~l------------~---~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~ 598 (1049)
++. +.|.+-+++..+++.- . --.+++.....+.+.-+.+++.+.-..|.+.++|.+-+....
T Consensus 633 p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~ 712 (1010)
T KOG1991|consen 633 PEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTY 712 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheee
Confidence 211 2222323333332210 0 012334455666777777777777778888888888877654
Q ss_pred CCCCccCCCC--CchhhhccCCCCCCCcchhhcccccceeeeccchhhHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHh
Q 001584 599 DDGSAVDIDG--SDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVR 676 (1049)
Q Consensus 599 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 676 (1049)
+.+...+-.. ..-.++-. +.+.-.+..-.+...|++.+..++..+++.+..|++-.++..+.
T Consensus 713 g~~~~~s~~~y~~il~~i~~----------------~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~ 776 (1010)
T KOG1991|consen 713 GTPSLLSNPDYLQILLEIIK----------------KVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALS 776 (1010)
T ss_pred CchhhhccchHHHHHHHHHH----------------HHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHH
Confidence 4321100000 00000000 00000011113577899999999999988777888888887766
Q ss_pred hhcC--CChHHHHHHHHH
Q 001584 677 HASY--FHEDVRYQAVFA 692 (1049)
Q Consensus 677 ~~~~--~~~~vr~~a~~~ 692 (1049)
.+.. .....|..+++.
T Consensus 777 ~l~~~~e~s~~~~~~leV 794 (1010)
T KOG1991|consen 777 RLTREVETSELRVMLLEV 794 (1010)
T ss_pred HHhccccchHHHHHHHHH
Confidence 5433 344556655553
No 10
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=2.3e-27 Score=254.92 Aligned_cols=896 Identities=14% Similarity=0.178 Sum_probs=583.3
Q ss_pred CCChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHh
Q 001584 47 AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQF 126 (1049)
Q Consensus 47 ~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~ 126 (1049)
+++...|.+|..=|-+.+++.--.++.+.-..+...+++.|. +.++.|.+.+..++|.+++.- ++.+...+...+...
T Consensus 16 ssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~-D~ngEVQnlAVKClg~lvsKv-ke~~le~~ve~L~~~ 93 (1233)
T KOG1824|consen 16 SSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLE-DKNGEVQNLAVKCLGPLVSKV-KEDQLETIVENLCSN 93 (1233)
T ss_pred CCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHhhh
Confidence 668899999999999999888777887877788888999888 599999999999999999754 334667777777777
Q ss_pred ccCCCHHHHHHHHHHHHHhhhhhhhcc-----cccHHHHHHHHHHhhCCC-CChHHHHHHHHHHHHhhcccCChhhHHHH
Q 001584 127 SQSEQEEHREVALILFSSLTETIGQTF-----RPHFADMQALLLKCLQDE-TSNRVRIAALKAIGSFLEFTNDGAEVVKF 200 (1049)
Q Consensus 127 l~~~~~~~~~~al~~l~~l~~~~~~~~-----~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 200 (1049)
+-++....|..+-..+.......++.. ...++.+.+.+..++... ....++..++..++.+.....+- .
T Consensus 94 ~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~l-----l 168 (1233)
T KOG1824|consen 94 MLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTL-----L 168 (1233)
T ss_pred hccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhccc-----C
Confidence 666666777766555655555555321 234456667776666542 34458888888877766544321 1
Q ss_pred HhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhh
Q 001584 201 REFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYK 280 (1049)
Q Consensus 201 ~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~ 280 (1049)
.++-+.++..+..-+......+++.++-++..++...+.. .+..+++.++.-++++.....+ +..+.++..++...
T Consensus 169 ~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly~~li~~Ll~~L~~~~q~~~~-rt~Iq~l~~i~r~a 244 (1233)
T KOG1824|consen 169 PNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LYVELIEHLLKGLSNRTQMSAT-RTYIQCLAAICRQA 244 (1233)
T ss_pred cchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHhccCCCCchHHH-HHHHHHHHHHHHHh
Confidence 1222444444444455566678999999999988766553 2334455555445555333344 45578888888765
Q ss_pred HhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchh---chHHHHHHHHhhhcC---------
Q 001584 281 YNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH---VFPPVFEFASVSCQN--------- 348 (1049)
Q Consensus 281 ~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~---~~~~ll~~l~~~l~~--------- 348 (1049)
+..+.+ ....+++.+.++....++ ++++.|....+++..+....+.+ .+|.+++.+.+++.-
T Consensus 245 g~r~~~--h~~~ivp~v~~y~~~~e~----~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~ 318 (1233)
T KOG1824|consen 245 GHRFGS--HLDKIVPLVADYCNKIEE----DDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTE 318 (1233)
T ss_pred cchhhc--ccchhhHHHHHHhccccc----CcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCc
Confidence 554433 555666777666654422 23378999999999999988844 456677666654420
Q ss_pred -------------------------CChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 001584 349 -------------------------ASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALG 403 (1049)
Q Consensus 349 -------------------------~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~ 403 (1049)
..|++|++|..++..+...-.+.+......+-|.++..+++....|+.-.+.+.-
T Consensus 319 eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi 398 (1233)
T KOG1824|consen 319 EDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYI 398 (1233)
T ss_pred cchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHH
Confidence 1399999999999998887777777778889999999999998899988888877
Q ss_pred HhHhhhcH---------------------HHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHH
Q 001584 404 QFAEYLQP---------------------EIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLM 462 (1049)
Q Consensus 404 ~l~~~~~~---------------------~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll 462 (1049)
.+....++ .+.+....++..+-+.+.+.+-+.+..+...|..++..++..+.++++.++
T Consensus 399 ~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slv 478 (1233)
T KOG1824|consen 399 ALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLV 478 (1233)
T ss_pred HHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccc
Confidence 66544321 011222344555555555555456677889999999999999999999999
Q ss_pred HHHHHhhcCCC--HhHHHHHHHHHHHH-HHHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchh-
Q 001584 463 GKLLAALENSP--RNLQETCMSAIGSV-AAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRA- 538 (1049)
Q Consensus 463 ~~l~~~l~~~~--~~v~~~~~~~l~~l-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~- 538 (1049)
+.+...+.+.+ ...+..++.++..+ +...++.|.|+.+.+.|.+..... ++...+...|+.....+++.+.+.
T Consensus 479 pgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~---d~fyKisaEAL~v~~~lvkvirpl~ 555 (1233)
T KOG1824|consen 479 PGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVG---DPFYKISAEALLVCQQLVKVIRPLQ 555 (1233)
T ss_pred hhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhc---CchHhhhHHHHHHHHHHHHHhcccC
Confidence 99999888743 55677777776554 445568899999998888877664 345566666777777777766431
Q ss_pred -----ccccchHHHHHHHHhccC--CCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCch
Q 001584 539 -----RMEPILPPFVEAAISGFG--LEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDD 611 (1049)
Q Consensus 539 -----~~~~~~~~i~~~l~~~l~--~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~ 611 (1049)
.+.|++.+++...++.+. +.+-++|+.++.|+|.+...+|+.....+|.+++.++..++.+.
T Consensus 556 ~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEi----------- 624 (1233)
T KOG1824|consen 556 PPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEI----------- 624 (1233)
T ss_pred CCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchh-----------
Confidence 356788888887777665 44678999999999999999999999999999999998886221
Q ss_pred hhhccCCCCCCCcchhhcccccceeeeccchhhHHHHHHHHHHHHHHh-hhhchhhHHHHHHHHHhhhcCCChHHHHHHH
Q 001584 612 ENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHT-KSSYAPFLEESLKILVRHASYFHEDVRYQAV 690 (1049)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~ 690 (1049)
.|-.|.+++..++... .-...|.+.++++.+...+...+...|.+..
T Consensus 625 --------------------------------TRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l 672 (1233)
T KOG1824|consen 625 --------------------------------TRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATL 672 (1233)
T ss_pred --------------------------------HHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888887754 3356788888888888777666677788888
Q ss_pred HHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Q 001584 691 FALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLL 770 (1049)
Q Consensus 691 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~l~~ 770 (1049)
.++..++.++... .+...+..++.++.+.+ .+.|..+...++..+..+..... ..+....+.+++.++.
T Consensus 673 ~a~~~L~~~~~~~-----~~~~~~e~vL~el~~Li-----sesdlhvt~~a~~~L~tl~~~~p-s~l~~~~~~iL~~ii~ 741 (1233)
T KOG1824|consen 673 TALDKLVKNYSDS-----IPAELLEAVLVELPPLI-----SESDLHVTQLAVAFLTTLAIIQP-SSLLKISNPILDEIIR 741 (1233)
T ss_pred HHHHHHHHHHhcc-----ccHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHhccc-HHHHHHhhhhHHHHHH
Confidence 8888888887521 12233444444444432 23344444444444443332211 1111222223333332
Q ss_pred HHHhhhh-------------h--cCCCCCCC-----------CCccc-cchhhHHHHHHHHhHHHHHHHHhCCChHHHHH
Q 001584 771 LLREEST-------------C--QQPDNDSD-----------IEDDD-DTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFA 823 (1049)
Q Consensus 771 ~l~~~~~-------------~--~~~~~~~~-----------~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 823 (1049)
.++...- . ..++.+-| ..+.. ..-+.+... +++.|...+....++...+...
T Consensus 742 ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~-siA~cvA~Lt~~~~~~s~s~a~ 820 (1233)
T KOG1824|consen 742 LLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYY-SIAKCVAALTCACPQKSKSLAT 820 (1233)
T ss_pred HhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHH-HHHHHHHHHHHhccccchhHHH
Confidence 2222110 0 00000000 00000 012334333 7888888888888765555555
Q ss_pred HHHHHHHHhhccCCCcccchhhhHhHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcchhh
Q 001584 824 KLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALK 903 (1049)
Q Consensus 824 ~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~ 903 (1049)
++..-+.. ...+..++.+|+-.+|++-++.+.. +.+.+...+++++++++.+||.+|+++||.++...-+.+.|
T Consensus 821 kl~~~~~s---~~s~~~ikvfa~LslGElgr~~~~s---~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLp 894 (1233)
T KOG1824|consen 821 KLIQDLQS---PKSSDSIKVFALLSLGELGRRKDLS---PQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLP 894 (1233)
T ss_pred HHHHHHhC---CCCchhHHHHHHhhhhhhccCCCCC---cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHH
Confidence 55443332 3344567889999999987765443 34456668899999999999999999999998744333322
Q ss_pred HHHH-----------HHHhhhhhhCCC--------------------C-CChhHHhhHHHHHHHHHHhCCCCCChhhHHH
Q 001584 904 YYGD-----------ILRGLYPLFGDS--------------------E-PDDAVRDNAAGAVARMIMVNPQSIPLNQVLP 951 (1049)
Q Consensus 904 ~~~~-----------~l~~L~~~l~~~--------------------~-~~~~~~~~a~~~l~~i~~~~~~~~~~~~~l~ 951 (1049)
++-. ++..|...+... + ..+..|.-...|+|+++...|+.+ +|
T Consensus 895 fil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesL-----lp 969 (1233)
T KOG1824|consen 895 FILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESL-----LP 969 (1233)
T ss_pred HHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHH-----HH
Confidence 2111 112222222110 0 124567777889999998777654 55
Q ss_pred HHHhhCCCCCcHHhhHHHHHHHHHHHhhCChhhcchhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhhHHHHH
Q 001584 952 VLLKVLPLKEDFEESMAVYNCISTLVLSSNPQILSLVPELVNLFAEVVVSPEESSEVKSQVGMAFSHLISLYGQQMQPLL 1031 (1049)
Q Consensus 952 ~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 1031 (1049)
.+-..+... +--....+...+...+...++-+.+++.+-+.-|...+.+ .+.++|+.....+....+.-|+-++.++
T Consensus 970 kL~~~~~S~-a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~d--pDl~VrrvaLvv~nSaahNKpslIrDll 1046 (1233)
T KOG1824|consen 970 KLKLLLRSE-ASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRD--PDLEVRRVALVVLNSAAHNKPSLIRDLL 1046 (1233)
T ss_pred HHHHHhcCC-CcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHccCHhHHHHHH
Confidence 554444322 1122233445555555566665666666666666566655 4677888888888887776665554444
No 11
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-27 Score=252.42 Aligned_cols=714 Identities=17% Similarity=0.206 Sum_probs=462.4
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCC-ChhHHHHHHHHHHHhhhhhccC-------CCH
Q 001584 2 AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAK-TPNVRQLAAVLLRKKITGHWAK-------LSP 73 (1049)
Q Consensus 2 ~~~l~~ll~~~~s~d~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~-~~~~R~~a~~~l~~~i~~~w~~-------~~~ 73 (1049)
.+.+.+.|+++++||+++|+.||..|+++..++++...+++++.+++ ++++|..|++.+|+.++++|.. +.+
T Consensus 4 le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~ 83 (960)
T KOG1992|consen 4 LETLANYLLQTLSPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIE 83 (960)
T ss_pred HHHHHHHHHhcCCCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccch
Confidence 36788999999999999999999999999999999999999999876 9999999999999999999954 567
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcc
Q 001584 74 QLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF 153 (1049)
Q Consensus 74 ~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~ 153 (1049)
+.++.||..++..+.+ ....+...+++++..|+++++|+ .||.++|.+...++++|-++..+.+..-..+.+.....+
T Consensus 84 ~~~e~ikslIv~lMl~-s~~~iQ~qlseal~~Ig~~DFP~-kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~ef 161 (960)
T KOG1992|consen 84 EDREQIKSLIVTLMLS-SPFNIQKQLSEALSLIGKRDFPD-KWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEF 161 (960)
T ss_pred hHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhccccch-hhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCccc
Confidence 8999999999999997 77999999999999999999995 999999999999999988877777777777776654322
Q ss_pred c--ccHHH-----------HHHHHHH---hhCC-CCCh---HHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHH
Q 001584 154 R--PHFAD-----------MQALLLK---CLQD-ETSN---RVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQ 213 (1049)
Q Consensus 154 ~--~~~~~-----------l~~~l~~---~l~~-~~~~---~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 213 (1049)
. ..|.+ +..++.+ ..+. ..+. .+-...+..++++.....-.+...-|++.+...+....+
T Consensus 162 rSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k 241 (960)
T KOG1992|consen 162 RSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHK 241 (960)
T ss_pred ccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHH
Confidence 1 11111 1112211 1111 0111 122222333333322111111112234444444444444
Q ss_pred Hhh-------cCCH------HHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhhhCCC---CChHHHHHHHHHHHHHH
Q 001584 214 CLA-------SGEE------DVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHN---LEPNTRHQAIQIISWLA 277 (1049)
Q Consensus 214 ~l~-------~~~~------~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~r~~a~~~l~~l~ 277 (1049)
.++ ++++ +.+...|+.+.-.+..++..|++.+++++...+.++.... .-+.....|++++..++
T Consensus 242 ~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~ 321 (960)
T KOG1992|consen 242 LLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVS 321 (960)
T ss_pred HHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 443 2111 2456788888888889999999999999987776654432 23556778899999988
Q ss_pred hhh--HhhhhhcCChHHHHHH-HhhhhccCCCCC---C-------------CCCCcHHHHHHHHHHHHHHHcchhchHHH
Q 001584 278 KYK--YNSLKKHKLVIPILQV-MCPLLAESNEAG---E-------------DDDLAPDRAAAEVIDTMALNLAKHVFPPV 338 (1049)
Q Consensus 278 ~~~--~~~~~~~~~~~~il~~-l~~~l~~~~~~~---~-------------d~~~~~~~~a~~~l~~l~~~~~~~~~~~l 338 (1049)
+.. +..+...+.+..+.+. +++-+.-..+|+ | .|-++-|++|...++.++..+...+.+.+
T Consensus 322 ~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~ 401 (960)
T KOG1992|consen 322 RRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVF 401 (960)
T ss_pred hhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHH
Confidence 632 2223333333333322 223222111111 1 13345688899999999998876666666
Q ss_pred HHHHHhhhc------CCChhHHhHHHHHHHHHhhcCh---------HHHH---Hh-HHHHHHHHHhhcCCCChhHHHHHH
Q 001584 339 FEFASVSCQ------NASPKYREAAVTAIGIISEGCA---------EWMK---EK-LESVLHIVLGALRDPEQFVRGAAS 399 (1049)
Q Consensus 339 l~~l~~~l~------~~~~~~r~~al~~l~~i~~~~~---------~~~~---~~-l~~i~~~l~~~l~d~~~~vr~~a~ 399 (1049)
-..+...+. +.||+.+..++..+..++-... ..+. .+ ..+++|.+.+.=..++|.++..++
T Consensus 402 ~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aI 481 (960)
T KOG1992|consen 402 SSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAI 481 (960)
T ss_pred HHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhccc
Confidence 666666665 5799999999998887764311 1111 11 234445444433357888998888
Q ss_pred HHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh---------ccccccchHHHHHHHHHhhc
Q 001584 400 FALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM---------GEEILPFLDPLMGKLLAALE 470 (1049)
Q Consensus 400 ~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~---------~~~l~~~~~~ll~~l~~~l~ 470 (1049)
+-+..+-..++ ..++-.++|.++..|..++.-|...|+.++..+.-.. +..+.||...++..++..++
T Consensus 482 Ky~~~FR~ql~---~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s 558 (960)
T KOG1992|consen 482 KYIYTFRNQLG---KEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALS 558 (960)
T ss_pred ceeeeecccCC---hHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhcc
Confidence 77766655554 3466779999999999998889899999998876432 23577899999999998888
Q ss_pred CCCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhc----cChhhhhhHHHHHHHHHHHHHhhchhc---cccc
Q 001584 471 NSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVL----TNDEDLRSRARATELLGLVAESVGRAR---MEPI 543 (1049)
Q Consensus 471 ~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~~~~~r~~a~~~l~~l~~~~~~~~---~~~~ 543 (1049)
.+...-.+..+.+|-++.....+...|+.+.+++.|.+++.. .+++ ..-...++.++.+.+..++.. +...
T Consensus 559 ~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P--~fnHYLFEsi~~li~~t~~~~~~~vs~~ 636 (960)
T KOG1992|consen 559 LPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNP--QFNHYLFESIGLLIRKTCKANPSAVSSL 636 (960)
T ss_pred CCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHHHHHHhccCchHHHHH
Confidence 776666778888888888888888889999888888777752 2333 334566888888887766433 2333
Q ss_pred hHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCchhhhccCCCCCCC
Q 001584 544 LPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSD 623 (1049)
Q Consensus 544 ~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (1049)
-..+++.+...++.+-.+.-.++++.++-+++..+..+.+....++|.+++-- .|.
T Consensus 637 e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~--------------lW~---------- 692 (960)
T KOG1992|consen 637 EEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPN--------------LWK---------- 692 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHH--------------HHh----------
Confidence 33444444444555556777889999999998887766555566666665311 111
Q ss_pred cchhhcccccceeeeccchhhHHHHHHHHHHHHHHhhhhch--hhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHH
Q 001584 624 DEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYA--PFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAH 701 (1049)
Q Consensus 624 ~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~ 701 (1049)
+++ .-.+..+.+..+....+..+. ..+..++..+-+++.+...+ ..+...|..++..+
T Consensus 693 --------------r~g---NipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~D--h~GF~LLn~i~~~~- 752 (960)
T KOG1992|consen 693 --------------RSG---NIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKAND--HHGFYLLNTIIESI- 752 (960)
T ss_pred --------------hcC---CcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccc--hhHHHHHHHHHhcC-
Confidence 111 123344555555544433333 33455555555544321111 23566666665542
Q ss_pred HhhccCCCChHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHh
Q 001584 702 AIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLRE 774 (1049)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~l~~~l~~ 774 (1049)
.+..+.+++..++..+++.++...-+..+.....-+.-..-+.|...+.+.++.+-+.++..+..
T Consensus 753 --------~~~~~~py~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~ik~~~~~l~e~~d~IQ~~~fg~l~e 817 (960)
T KOG1992|consen 753 --------PPNELAPYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFTIKKGGLMLAEVIDGIQPGMFGMLLE 817 (960)
T ss_pred --------CHhhhhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHHHHH
Confidence 34556778888888888888776555555444444444433444333444444444444444443
No 12
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.98 E-value=8.2e-26 Score=229.95 Aligned_cols=656 Identities=13% Similarity=0.140 Sum_probs=462.8
Q ss_pred cHHHHHHHHHHHHHH-HcchhchHHHHHHHHhhhcCCCh-hHHhHHHHHHHHHhhcC-hHHHHHhHHHHHHHHHhhc-C-
Q 001584 314 APDRAAAEVIDTMAL-NLAKHVFPPVFEFASVSCQNASP-KYREAAVTAIGIISEGC-AEWMKEKLESVLHIVLGAL-R- 388 (1049)
Q Consensus 314 ~~~~~a~~~l~~l~~-~~~~~~~~~ll~~l~~~l~~~~~-~~r~~al~~l~~i~~~~-~~~~~~~l~~i~~~l~~~l-~- 388 (1049)
.....|+..+..++. .++...||.++..+..+..+..+ ..+..++.++|++++.. |+.+......++-.++.+- +
T Consensus 109 r~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~ 188 (858)
T COG5215 109 RFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKN 188 (858)
T ss_pred HHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhccc
Confidence 456778888888886 56788999999999888776654 47788999999999864 4455555556665555443 3
Q ss_pred CCChhHHHHHHHHHHHhHhhhcHHHH--hhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHH-
Q 001584 389 DPEQFVRGAASFALGQFAEYLQPEIV--SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKL- 465 (1049)
Q Consensus 389 d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l- 465 (1049)
.++..||.+|+.+|..-+......+. ...+-++...++.-+.++.+++.++..||..+..-+.+.+.+|++..+-.+
T Consensus 189 et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt 268 (858)
T COG5215 189 ETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALT 268 (858)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999886655544432 122347888888999999999999999999999998888899999776665
Q ss_pred HHhhcCCCHhHHHHHHHHHHHHHHHhh--hhcccc---------------HHHHHHHHHHHHhcc----ChhhhhhHHHH
Q 001584 466 LAALENSPRNLQETCMSAIGSVAAAAE--QAFIPY---------------AERVLELLKIFMVLT----NDEDLRSRARA 524 (1049)
Q Consensus 466 ~~~l~~~~~~v~~~~~~~l~~l~~~~~--~~~~~~---------------~~~~~~~l~~~l~~~----~~~~~~~r~~a 524 (1049)
...+.+++.++...+++.|+++++.-- +.-..| ...++|.+.+++.+. .++++.....|
T Consensus 269 ~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA 348 (858)
T COG5215 269 GRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAA 348 (858)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhH
Confidence 455778899999999999999986321 111122 234889888888752 22345555567
Q ss_pred HHHHHHHHHhhchhccccchHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHccc-CccCchhhhhHHHHhhccCCCCCc
Q 001584 525 TELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLED-GFAQYLPLVVPLAFSSCNLDDGSA 603 (1049)
Q Consensus 525 ~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~-~~~~~l~~i~~~ll~~~~~~~~~~ 603 (1049)
-.|+..+++..|...+.| ++..+-+.+++++|.-|+.+..++|++.....+ -..+|+++.+|.++.... |
T Consensus 349 ~sCLqlfaq~~gd~i~~p----Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~-D---- 419 (858)
T COG5215 349 SSCLQLFAQLKGDKIMRP----VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMS-D---- 419 (858)
T ss_pred HHHHHHHHHHhhhHhHHH----HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcc-c----
Confidence 889999999998766665 333444567889999999999999999977653 467888999998886553 1
Q ss_pred cCCCCCchhhhccCCCCCCCcchhhcccccceeeeccchhhHHHHHHHHHHHHHHhhhhchhh--HHHHHHHHHh-hhcC
Q 001584 604 VDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPF--LEESLKILVR-HASY 680 (1049)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~~~~~~~--~~~~~~~l~~-~~~~ 680 (1049)
+.+.+|..+.|+++.++.+....+.|. +.......+. +.+.
T Consensus 420 ------------------------------------~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~ 463 (858)
T COG5215 420 ------------------------------------SCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC 463 (858)
T ss_pred ------------------------------------ceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc
Confidence 122378889999999999998888774 4433333332 2322
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHhhh-CChHHHHHHHHHHHHHHHHHhCCcccHH
Q 001584 681 FHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTE-DDDKDVVAQACTSIVEIINDYGYMAVEP 759 (1049)
Q Consensus 681 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~l~~~i~~~g~~~~~~ 759 (1049)
+-+-.........++..+.... ...+..+.+++..++..|++.... ..+.+.+.+.+++++.++.... ....+
T Consensus 464 --p~~~~ncsw~~~nlv~h~a~a~---~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~-d~V~~ 537 (858)
T COG5215 464 --PFRSINCSWRKENLVDHIAKAV---REVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICP-DAVSD 537 (858)
T ss_pred --chHHhhhHHHHHhHHHhhhhhh---ccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcc-hhHHH
Confidence 2222233344444444333221 223456777888888888876533 3466778899999999987655 33333
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhccCCCc
Q 001584 760 YMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPL 839 (1049)
Q Consensus 760 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 839 (1049)
.+..+...+.+-|.....-+. .--+.+| .-.-+.+......++..+++..+....+.-++++..+++.+++.++.
T Consensus 538 ~~a~~~~~~~~kl~~~isv~~--q~l~~eD---~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t 612 (858)
T COG5215 538 ILAGFYDYTSKKLDECISVLG--QILATED---QLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPT 612 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--hhhhhHH---HHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCc
Confidence 333333333322222111000 0000001 11123355577788889999989888888889999999999877665
Q ss_pred ccchhhhHhHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCCC
Q 001584 840 QDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDS 919 (1049)
Q Consensus 840 ~~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~ 919 (1049)
......+..++.+...+++.+..|++.++|.+.+.++..|..|...|...+|+++...+.+|.+|...++..|.+.++.+
T Consensus 613 ~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~ 692 (858)
T COG5215 613 TAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSE 692 (858)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCh
Confidence 66677888899999999999999999999999999988888999999999999999999999999999999999999876
Q ss_pred CCChhHHhhHHHHHHHHHHhCCCCC-C-hhhHHHHHHh--hCCCCCcHHh-----------hHHHHHHHHHHHhhCChhh
Q 001584 920 EPDDAVRDNAAGAVARMIMVNPQSI-P-LNQVLPVLLK--VLPLKEDFEE-----------SMAVYNCISTLVLSSNPQI 984 (1049)
Q Consensus 920 ~~~~~~~~~a~~~l~~i~~~~~~~~-~-~~~~l~~~l~--~lp~~~d~~e-----------~~~~~~~l~~l~~~~~~~~ 984 (1049)
-.++.+.-...+++|-|...-...+ + ++.++-.+.. .+....|.-+ ...+|-++..........+
T Consensus 693 ~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v 772 (858)
T COG5215 693 ATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSV 772 (858)
T ss_pred hhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHh
Confidence 6677777778888888877643332 3 5554444432 2222222211 1224455555554444567
Q ss_pred cchhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhh
Q 001584 985 LSLVPELVNLFAEVVVSPEESSEVKSQVGMAFSHLISLYGQ 1025 (1049)
Q Consensus 985 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 1025 (1049)
+||+..|...+..+..++..++..-+.++++|+++...||.
T Consensus 773 ~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpk 813 (858)
T COG5215 773 LPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPK 813 (858)
T ss_pred hhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCC
Confidence 89999999999888888777666668899999999999884
No 13
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2e-23 Score=221.31 Aligned_cols=586 Identities=17% Similarity=0.251 Sum_probs=369.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHhc-CCChhHHHHHHHHHHHhhhhhccC-----CCHHHHHH
Q 001584 5 LELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRT-AKTPNVRQLAAVLLRKKITGHWAK-----LSPQLKQL 78 (1049)
Q Consensus 5 l~~ll~~~~s~d~~~r~~a~~~L~~~~~~p~~~~~l~~il~~-~~~~~~R~~a~~~l~~~i~~~w~~-----~~~~~~~~ 78 (1049)
+.++|++..|+|..++|.||++|++++++|+|...|..++.+ +.+..+|-+|++.||+-|.++|.. +++|.+..
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~~ 81 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKDF 81 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHHH
Confidence 468899999999999999999999999999999999999887 457899999999999999999975 78999999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCC----CHHHHHHHHHHHHHhhhhhhh---
Q 001584 79 VKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE----QEEHREVALILFSSLTETIGQ--- 151 (1049)
Q Consensus 79 i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~----~~~~~~~al~~l~~l~~~~~~--- 151 (1049)
||..++..+. |+++.+-.+.|.+++.||+.++|. .||+++|.+.+.+++. |....+..+..+..+.+..+.
T Consensus 82 iR~~Ll~~~~-E~~nQlaiQ~AvlisrIARlDyPr-eWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~RL 159 (978)
T KOG1993|consen 82 IRCNLLLHSD-EENNQLAIQNAVLISRIARLDYPR-EWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATKRL 159 (978)
T ss_pred HHHHHHHhcc-cchhHHHHHHHHHHHHHHhcCCCc-cchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999988 688999999999999999999995 9999999999988875 777778888888888876542
Q ss_pred -----cccccHHHHHHHHHHhhCCC------------C------ChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHH
Q 001584 152 -----TFRPHFADMQALLLKCLQDE------------T------SNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSIL 208 (1049)
Q Consensus 152 -----~~~~~~~~l~~~l~~~l~~~------------~------~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll 208 (1049)
.|.+..+.+.+.+...+-++ . ...+-..+++++.+++-+.-.++....+..-++..+
T Consensus 160 ~a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse~~eRl~~F~ 239 (978)
T KOG1993|consen 160 LADRKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSEFFERLLQFL 239 (978)
T ss_pred hhhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHH
Confidence 23333344444332222220 0 112233445555555433211111111222233333
Q ss_pred HHHHH----HhhcCC----HHHHH----HHHHHHHHHhccCCcchhh--hHHHHHHHHHHhhhCC-----------CCCh
Q 001584 209 NVSRQ----CLASGE----EDVAV----IAFEIFDELIESPAPLLGD--SVKSIVHFSLEVSSSH-----------NLEP 263 (1049)
Q Consensus 209 ~~l~~----~l~~~~----~~~~~----~~~~~l~~l~~~~~~~~~~--~~~~l~~~l~~~~~~~-----------~~~~ 263 (1049)
+.-.+ .+..+. .+... ...+++..+.+.+|--|.. ..+..+++.+....++ ..-+
T Consensus 240 e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yIf~~~~~l~~~~~~~~~fe 319 (978)
T KOG1993|consen 240 ELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDEYDFLGQISGHLSSFE 319 (978)
T ss_pred HHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhhhcccchhcccccccccHH
Confidence 33111 111111 12122 2334455556665544433 3344444443332222 1112
Q ss_pred HHHHHHHHHHHHHHhh---hHhh---------------hh--hcCC-----hHHHHHHHhhh--------hccCCCCCC-
Q 001584 264 NTRHQAIQIISWLAKY---KYNS---------------LK--KHKL-----VIPILQVMCPL--------LAESNEAGE- 309 (1049)
Q Consensus 264 ~~r~~a~~~l~~l~~~---~~~~---------------~~--~~~~-----~~~il~~l~~~--------l~~~~~~~~- 309 (1049)
+.-.+++..+..+... ++.. .. ...| +..+.+.++.. +.+|.+|.|
T Consensus 320 ~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~YflLt~~eLEeW~~dPE~ 399 (978)
T KOG1993|consen 320 EFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHYFLLTEEELEEWTQDPEG 399 (978)
T ss_pred HHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCHHHHHHHhcChHH
Confidence 2233344444433221 1100 00 0011 11222233222 122332211
Q ss_pred --------CCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCC--------Ch-hHHhHHHHHHHHHhhcChHHH
Q 001584 310 --------DDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNA--------SP-KYREAAVTAIGIISEGCAEWM 372 (1049)
Q Consensus 310 --------d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~--------~~-~~r~~al~~l~~i~~~~~~~~ 372 (1049)
|-+...|-+|......+-..+++-+.|.++..+.+..+.. +. -.+.|...++|..+....+.+
T Consensus 400 ~~~Eq~~~dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~ 479 (978)
T KOG1993|consen 400 WVLEQSGGDWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNIL 479 (978)
T ss_pred hhhhcccccceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2234678899999999998888888899999886554322 11 234455555555544322211
Q ss_pred HHhHHHHHHHHHhhcC---CCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCC-ChHHHHHHHHHHHHHHH
Q 001584 373 KEKLESVLHIVLGALR---DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE-SDEVKEKSYYALAAFCE 448 (1049)
Q Consensus 373 ~~~l~~i~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~v~~~a~~~l~~l~~ 448 (1049)
++-.-+...++.-+. +....+|...+|.+|+..+.-.+ .+.-+-+-..+++.+++. +..|+..++.++...++
T Consensus 480 -dF~~Wl~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~--~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vD 556 (978)
T KOG1993|consen 480 -DFDKWLQEALLPELANDHGNSRIIRRRVAWILGQWVSVQQK--LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVD 556 (978)
T ss_pred -CHHHHHHHhhCHHhhhcccchhHHHHHHHHHHhhhhheech--HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhh
Confidence 111122233333333 22345788899999998774211 222233566677888887 56788999999999998
Q ss_pred hh---ccccccchHHHHHHHHHhhcC-CCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHH
Q 001584 449 DM---GEEILPFLDPLMGKLLAALEN-SPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARA 524 (1049)
Q Consensus 449 ~~---~~~l~~~~~~ll~~l~~~l~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a 524 (1049)
.. ++.+.||++.+...+++++.. ..-+.|..++..++.++..+++.+.||..+++.++..+....+ ++.-+|.+.
T Consensus 557 D~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~al 635 (978)
T KOG1993|consen 557 DWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCAL 635 (978)
T ss_pred hccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHH
Confidence 76 467889999999999988875 3466889999999999999999999999999999988776543 344578888
Q ss_pred HHHHHHHHHhhchhc--cccchHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhcc
Q 001584 525 TELLGLVAESVGRAR--MEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCN 597 (1049)
Q Consensus 525 ~~~l~~l~~~~~~~~--~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~ 597 (1049)
+.++-.+..++|.+. +.|++-++++....--+.++--+-+..+..|+...... ..+.|-+-.++|.+...+.
T Consensus 636 L~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~-~~l~p~ll~L~p~l~~~iE 709 (978)
T KOG1993|consen 636 LATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNS-QKLTPELLLLFPHLLYIIE 709 (978)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcc-cccCHHHHHHHHHHHHHHH
Confidence 899999999998543 44555555554332222233446788888888887665 4455555566677665553
No 14
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.95 E-value=3.6e-22 Score=215.44 Aligned_cols=579 Identities=19% Similarity=0.263 Sum_probs=376.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhccC----------
Q 001584 2 AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAK---------- 70 (1049)
Q Consensus 2 ~~~l~~ll~~~~s~d~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~-~~~~~R~~a~~~l~~~i~~~w~~---------- 70 (1049)
.+.+..+|.+.+|+|+.+|.+||..++++...++|-..|..++.+. .+-+.||.|.+.|++++.+||..
T Consensus 3 ~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~ 82 (1005)
T KOG2274|consen 3 KQAIIELLSGSLSADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLI 82 (1005)
T ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCc
Confidence 3568899999999999999999999999999999999999999875 57899999999999999999976
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhh
Q 001584 71 LSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG 150 (1049)
Q Consensus 71 ~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~ 150 (1049)
.+.+.+..||+.|++.+. +++..+|..++.++..|+..++|+ .||+++|.+..++.+++.+...++++++..+.....
T Consensus 83 ~~e~~K~~IRe~Ll~~l~-~sn~ki~~~vay~is~Ia~~D~Pd-~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~ 160 (1005)
T KOG2274|consen 83 VSEEVKALIREQLLNLLD-DSNSKIRSAVAYAISSIAAVDYPD-EWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVD 160 (1005)
T ss_pred ccHHHHHHHHHHHHhhhh-ccccccchHHHHHHHHHHhccCch-hhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHH
Confidence 356788899999999999 689999999999999999999995 999999999999999888999999999999987654
Q ss_pred hc-c----cccHHHHHHHHHHhhCCCCChHHHHHHH--HHHHHhhcccCChhh------HHHHHhhhHHHHHHHHHHhhc
Q 001584 151 QT-F----RPHFADMQALLLKCLQDETSNRVRIAAL--KAIGSFLEFTNDGAE------VVKFREFIPSILNVSRQCLAS 217 (1049)
Q Consensus 151 ~~-~----~~~~~~l~~~l~~~l~~~~~~~vr~~a~--~~l~~~~~~~~~~~~------~~~~~~~~~~ll~~l~~~l~~ 217 (1049)
.. . ....+.+...+ ..... .+...|..++ ..+..+........+ ..-+...++..++.+.+.++-
T Consensus 161 ~ee~~~~~~~~l~~m~~~f-~~~~~-~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~~ 238 (1005)
T KOG2274|consen 161 VEEMFFVGPVSLAEMYRIF-ALTIV-YSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQR 238 (1005)
T ss_pred HHHHhcccccchhhhhhhh-hhccc-cchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 21 1 11222222222 22222 3333444333 444444333221111 112345566677766666554
Q ss_pred CC---HHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhhh-------------CC-------CCCh------HHHHH
Q 001584 218 GE---EDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSS-------------SH-------NLEP------NTRHQ 268 (1049)
Q Consensus 218 ~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~-------------~~-------~~~~------~~r~~ 268 (1049)
++ ...+.+.++++..+.+..|....+.....+...++... .. +.++ ..-..
T Consensus 239 ~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~ 318 (1005)
T KOG2274|consen 239 NDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQ 318 (1005)
T ss_pred cccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhhh
Confidence 33 34577888899988888777666655444433322110 00 1111 23345
Q ss_pred HHHHHHHHHhhhH--hhhhhcCChHHHHHHHhhh--hc-----cCCC------CCCCCCCcHHHHHHHHHHHHHHHcchh
Q 001584 269 AIQIISWLAKYKY--NSLKKHKLVIPILQVMCPL--LA-----ESNE------AGEDDDLAPDRAAAEVIDTMALNLAKH 333 (1049)
Q Consensus 269 a~~~l~~l~~~~~--~~~~~~~~~~~il~~l~~~--l~-----~~~~------~~~d~~~~~~~~a~~~l~~l~~~~~~~ 333 (1049)
.++|++.++.... +.+.+ -+++.+..+... +. .|.. .+|++.+..|..+...+-.+...+|..
T Consensus 319 i~eF~s~i~t~~~~~~ti~~--~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd~~~~v~~~f~~~ 396 (1005)
T KOG2274|consen 319 IVEFLSTIVTNRFLSKTIKK--NLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRDLLLEVITTFGNE 396 (1005)
T ss_pred HHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHHHHHHHHHhccch
Confidence 5677777765321 11221 122222221111 11 1211 133444567777777777777777754
Q ss_pred chHHHHHHHHhhh---------cCC-ChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHH
Q 001584 334 VFPPVFEFASVSC---------QNA-SPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFAL 402 (1049)
Q Consensus 334 ~~~~ll~~l~~~l---------~~~-~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l 402 (1049)
....+.+...+.+ ..+ .|+...+.+.+.....++. .....+..+...+..++. +..|..-..+++++
T Consensus 397 ~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~--~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i 474 (1005)
T KOG2274|consen 397 GINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDD--ANDDKLIELTIMIDNGLVYQESPFLLLRAFLTI 474 (1005)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCc--chHHHHHHHHHHHHhhcccccCHHHHHHHHHHH
Confidence 4444444432222 223 4677777777766655432 222345555666666665 46676666999999
Q ss_pred HHhHhhhcHHHHhhhhhHHHHHHHhcc-CCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHH
Q 001584 403 GQFAEYLQPEIVSHYESVLPCILNALE-DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCM 481 (1049)
Q Consensus 403 ~~l~~~~~~~~~~~~~~ll~~l~~~l~-~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~ 481 (1049)
+.+++.... ..+.+..++...+..+. +..+.++.+|+.++..++ -..-+.+..|.+++.+.++.......+....+
T Consensus 475 ~~fs~~~~~-~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~qlas~~s~evl~llm 551 (1005)
T KOG2274|consen 475 SKFSSSTVI-NPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLLQLASKSSDEVLVLLM 551 (1005)
T ss_pred HHHHhhhcc-chhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHHHHcccccHHHHHHHH
Confidence 988887421 22334446666666665 444667877777776665 23457799999999999999988999999999
Q ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHhc-cChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCCC-
Q 001584 482 SAIGSVAAAAEQAFIPYAERVLELLKIFMVL-TNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEF- 559 (1049)
Q Consensus 482 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~- 559 (1049)
++++.++..-++.-..--..+.|....++.. .+++ .+...+.+++-.++... ....|+...+++.+++.++.+.
T Consensus 552 E~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP--~V~~~~qd~f~el~q~~--~~~g~m~e~~iPslisil~~~~~ 627 (1005)
T KOG2274|consen 552 EALSSVVKLDPEFAASMESKICPLTINLFLKYSEDP--QVASLAQDLFEELLQIA--ANYGPMQERLIPSLISVLQLNAD 627 (1005)
T ss_pred HHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHH--HhhcchHHHHHHHHHHHHcCccc
Confidence 9999998876654333335577777776654 3444 44455566666666532 3567777778888887777554
Q ss_pred ---chhhHHHHHHHHHHHHHcccCccCc-hhhhhHHHHhh
Q 001584 560 ---SELREYTHGFFSNIAGVLEDGFAQY-LPLVVPLAFSS 595 (1049)
Q Consensus 560 ---~~~r~~~~~~l~~l~~~~~~~~~~~-l~~i~~~ll~~ 595 (1049)
..+..-++..+..+.+..+..+..- +...+|.+.+.
T Consensus 628 ~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~ 667 (1005)
T KOG2274|consen 628 KAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKI 667 (1005)
T ss_pred ccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhh
Confidence 4566677778888888777654332 23344555443
No 15
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.6e-20 Score=196.32 Aligned_cols=496 Identities=19% Similarity=0.192 Sum_probs=313.2
Q ss_pred ChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCC-ChhHHHHHHHHHHHhhhhhccCC--------
Q 001584 1 MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAK-TPNVRQLAAVLLRKKITGHWAKL-------- 71 (1049)
Q Consensus 1 m~~~l~~ll~~~~s~d~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~-~~~~R~~a~~~l~~~i~~~w~~~-------- 71 (1049)
|.+++.+++.+++++|..+|+.||..|++++++|+|+..+++++.+++ ++.+|+.|+++||+.|.+.|+..
T Consensus 1 ~~~ellqcf~qTldada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~D 80 (970)
T COG5656 1 MREELLQCFLQTLDADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKAD 80 (970)
T ss_pred ChHHHHHHHHHHhccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCc
Confidence 678999999999999999999999999999999999999999998764 89999999999999999999873
Q ss_pred -CHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhh
Q 001584 72 -SPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG 150 (1049)
Q Consensus 72 -~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~ 150 (1049)
.++.++.+.+.++..+.. ++...|...-.++..|.+.++|.+.|+ +.|....++.+++..+...|+.|+..++....
T Consensus 81 ek~e~K~~lienil~v~l~-sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfkayR 158 (970)
T COG5656 81 EKSEAKKYLIENILDVFLY-SPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFKAYR 158 (970)
T ss_pred ccHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHHHHh
Confidence 234555555555555553 455566677777777888899988999 99999999999999999999999999997643
Q ss_pred -------hcccccHHHHHHHHHHhhC---CCC---ChHHHHHHHHHHHHhhcc-cCCh-hhHHHHHhhhHHHHHHHHHHh
Q 001584 151 -------QTFRPHFADMQALLLKCLQ---DET---SNRVRIAALKAIGSFLEF-TNDG-AEVVKFREFIPSILNVSRQCL 215 (1049)
Q Consensus 151 -------~~~~~~~~~l~~~l~~~l~---~~~---~~~vr~~a~~~l~~~~~~-~~~~-~~~~~~~~~~~~ll~~l~~~l 215 (1049)
....+....+.|.+.+.-+ +.. +.++-...++.+...+-+ .++. .....+..++...+.++.+-+
T Consensus 159 wk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i~qkpl 238 (970)
T COG5656 159 WKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRILQKPL 238 (970)
T ss_pred hhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHHHcCCC
Confidence 1122334445555544322 111 223333333333322211 1110 011123333333333333222
Q ss_pred hc----CCHHH---------HHHHHHHHHHHhccCCc--------ch----hhhHHHHHHHHHHhh---hCCC--CChHH
Q 001584 216 AS----GEEDV---------AVIAFEIFDELIESPAP--------LL----GDSVKSIVHFSLEVS---SSHN--LEPNT 265 (1049)
Q Consensus 216 ~~----~~~~~---------~~~~~~~l~~l~~~~~~--------~~----~~~~~~l~~~l~~~~---~~~~--~~~~~ 265 (1049)
.. -++++ .+.|+-.|.++.....+ .+ ...++.++...++.. ++++ .++..
T Consensus 239 p~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLWlsd~~ 318 (970)
T COG5656 239 PNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLWLSDIE 318 (970)
T ss_pred CHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeecchHH
Confidence 11 13333 23455445544433221 11 123344444333322 1221 23333
Q ss_pred HHHHHHHHHHHHhhhHhhhhhcCChHH----HH-HHHhhhhccCCCCCC-----------------CCCCcHHHHHHHHH
Q 001584 266 RHQAIQIISWLAKYKYNSLKKHKLVIP----IL-QVMCPLLAESNEAGE-----------------DDDLAPDRAAAEVI 323 (1049)
Q Consensus 266 r~~a~~~l~~l~~~~~~~~~~~~~~~~----il-~~l~~~l~~~~~~~~-----------------d~~~~~~~~a~~~l 323 (1049)
-.....|+..++. ++..+ ++++| ++ ..++|.++-.++++| ++..++..+|..++
T Consensus 319 LYfi~~Fve~cv~--~d~tw--~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaal~fl 394 (970)
T COG5656 319 LYFIDFFVELCVD--ADQTW--RLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFFL 394 (970)
T ss_pred HHHHHHHHHHHhh--hHhhH--hhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHHH
Confidence 3222233333332 12122 13333 22 345677765443321 22335566677777
Q ss_pred HHHHHHcchhchHHHHHHHHhhhc-C-------CChhHHhHHHHHHHHHhh--cChHHHHHhHH-HHHHHHHhhcCCCCh
Q 001584 324 DTMALNLAKHVFPPVFEFASVSCQ-N-------ASPKYREAAVTAIGIISE--GCAEWMKEKLE-SVLHIVLGALRDPEQ 392 (1049)
Q Consensus 324 ~~l~~~~~~~~~~~ll~~l~~~l~-~-------~~~~~r~~al~~l~~i~~--~~~~~~~~~l~-~i~~~l~~~l~d~~~ 392 (1049)
-.+....++..+..+++++..-+. + .+.+..++|+..++.+.. .........++ -+++.+.+.++++.-
T Consensus 395 ~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~yg 474 (970)
T COG5656 395 IISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYG 474 (970)
T ss_pred HHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCccc
Confidence 777777778888888888876662 1 356788999999998877 22222233333 356888889999999
Q ss_pred hHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh--ccccccchHHHHHHHHHhhc
Q 001584 393 FVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM--GEEILPFLDPLMGKLLAALE 470 (1049)
Q Consensus 393 ~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~--~~~l~~~~~~ll~~l~~~l~ 470 (1049)
-.|..||..++.+.+.++.. ..+-++.....++++++.-.|+..|.-|+..++.+. .+.+..+++..|+.++.+-+
T Consensus 475 fL~Srace~is~~eeDfkd~--~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn 552 (970)
T COG5656 475 FLKSRACEFISTIEEDFKDN--GILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSN 552 (970)
T ss_pred chHHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcc
Confidence 99999999999998777642 233456677777888877789999999999998765 45677899999999998866
Q ss_pred CCCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHH
Q 001584 471 NSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLK 507 (1049)
Q Consensus 471 ~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~ 507 (1049)
.-+-++-..++ ..+++..++.+.||..+++..+.
T Consensus 553 ~feiD~LS~vM---e~fVe~fseELspfa~eLa~~Lv 586 (970)
T COG5656 553 TFEIDPLSMVM---ESFVEYFSEELSPFAPELAGSLV 586 (970)
T ss_pred cccchHHHHHH---HHHHHHhHHhhchhHHHHHHHHH
Confidence 65544433333 34455556666777666555443
No 16
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.95 E-value=3.9e-22 Score=209.21 Aligned_cols=745 Identities=17% Similarity=0.215 Sum_probs=478.9
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCc
Q 001584 160 MQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP 239 (1049)
Q Consensus 160 l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 239 (1049)
++..++.. .+ ..+..|..+++.|..-+..... -..|..++|.++.. .+ +...++...+.+..+......
T Consensus 365 i~~llLkv-KN-G~ppmRk~~LR~ltdkar~~ga---~~lfnqiLpllMs~---tL---eDqerhllVkvidriLyklDd 433 (1172)
T KOG0213|consen 365 IMRLLLKV-KN-GTPPMRKSALRILTDKARNFGA---GPLFNQILPLLMSP---TL---EDQERHLLVKVIDRILYKLDD 433 (1172)
T ss_pred HHHHHHhh-cC-CCchhHHHHHHHHHHHHHhhcc---HHHHHHHHHHHcCc---cc---cchhhhhHHHHHHHHHHhhcc
Confidence 44444443 23 4566788888877654443321 11133334433321 11 234456666666666555444
Q ss_pred chhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHH
Q 001584 240 LLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAA 319 (1049)
Q Consensus 240 ~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a 319 (1049)
...+++..++-..-..+- +.+.-.|...-++++.++...+- ..++..+ ..|.+..|.-+|+..
T Consensus 434 lvrpYVhkILvVieplli--ded~yar~egreIisnLakaaGl--------a~mistm-------rpDidn~deYVRntt 496 (1172)
T KOG0213|consen 434 LVRPYVHKILVVIEPLLI--DEDYYARVEGREIISNLAKAAGL--------ATMISTM-------RPDIDNKDEYVRNTT 496 (1172)
T ss_pred cchhceeeeEEEeeccee--cchHHHhhchHHHHHHHHHHhhh--------HHHHHhh-------cCCcccccHHHHHHH
Confidence 444444433211111111 11334455556788877754321 1122222 122222333789999
Q ss_pred HHHHHHHHHHcchhchHHHHHHHHhhhcCC-ChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHH
Q 001584 320 AEVIDTMALNLAKHVFPPVFEFASVSCQNA-SPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAA 398 (1049)
Q Consensus 320 ~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~-~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a 398 (1049)
+.+++.++..+| .|.++|++...++|. +|+-|+.++.+..+|+.-.+-.+.+|+..++..+-.++.|.+..||..+
T Consensus 497 arafavvasalg---ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~it 573 (1172)
T KOG0213|consen 497 ARAFAVVASALG---IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTIT 573 (1172)
T ss_pred HHHHHHHHHHhC---cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHH
Confidence 999999998887 456778888888886 8999999999999999876667789999999999999999999999999
Q ss_pred HHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccc-cchHHHHHHHHHhhcCCCHhHH
Q 001584 399 SFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEIL-PFLDPLMGKLLAALENSPRNLQ 477 (1049)
Q Consensus 399 ~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~-~~~~~ll~~l~~~l~~~~~~v~ 477 (1049)
..+++.+++...|--...++.++..|.+++...-...-.+-+.|++-++......-. -|-..++-.+..-+.+++..++
T Consensus 574 Alalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemk 653 (1172)
T KOG0213|consen 574 ALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMK 653 (1172)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHH
Confidence 999999999888766777888999999888766555555666666666655533333 3445778888888899999999
Q ss_pred HHHHHHHHHHHHHhhhhccccH-HHHHHHHHHHHhc-cChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhcc
Q 001584 478 ETCMSAIGSVAAAAEQAFIPYA-ERVLELLKIFMVL-TNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGF 555 (1049)
Q Consensus 478 ~~~~~~l~~l~~~~~~~~~~~~-~~~~~~l~~~l~~-~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l 555 (1049)
..++..+..++...|-.- .|. ..++|.+...... ...-+.+.-....++-..++..+|.. +++..++..+
T Consensus 654 kivLKVv~qcc~t~Gv~~-~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~-------~~v~R~v~~l 725 (1172)
T KOG0213|consen 654 KIVLKVVKQCCATDGVEP-AYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSD-------PIVSRVVLDL 725 (1172)
T ss_pred HHHHHHHHHHhcccCCCH-HHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCch-------HHHHHHhhhh
Confidence 999999998887765321 122 3455544443332 11111111123356777788888852 5666666677
Q ss_pred CCCCchhhHHHHHHHHHHHHHcc-cCccCch-hhhhHHHHhhccCCCCCccCCCCCchhhhccCCCCCCCcchhhccccc
Q 001584 556 GLEFSELREYTHGFFSNIAGVLE-DGFAQYL-PLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVR 633 (1049)
Q Consensus 556 ~~~~~~~r~~~~~~l~~l~~~~~-~~~~~~l-~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1049)
.++....|........++...+| .++..-+ +.++..++.+++.++.
T Consensus 726 kde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt-------------------------------- 773 (1172)
T KOG0213|consen 726 KDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTT-------------------------------- 773 (1172)
T ss_pred ccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhccc--------------------------------
Confidence 88888899999999999998888 3454433 3455666655542210
Q ss_pred ceeeeccchhhHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhhccCCCChHH
Q 001584 634 NISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAK 713 (1049)
Q Consensus 634 ~~~i~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 713 (1049)
+-...+..++.+...++.-..||+++++..++..++.....+|..|+.++..+....+.. +.+
T Consensus 774 ----------~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc------~ee- 836 (1172)
T KOG0213|consen 774 ----------EDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTC------GEE- 836 (1172)
T ss_pred ----------chhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhc------cHH-
Confidence 111345667777788888899999999999999999999999999999998887655421 222
Q ss_pred HHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccccc
Q 001584 714 AREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDT 793 (1049)
Q Consensus 714 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 793 (1049)
+++..+--.|.+.+. +..++++..++.++..+..+.|-....+-+..+++.+.++|+.++..
T Consensus 837 --~~m~~lGvvLyEylg-eeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheK--------------- 898 (1172)
T KOG0213|consen 837 --KLMGHLGVVLYEYLG-EEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEK--------------- 898 (1172)
T ss_pred --HHHHHhhHHHHHhcC-cccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHH---------------
Confidence 223333333334344 45899999999999999999987666677788888888999887643
Q ss_pred hhhHHHHHHHHhHHHHHHHHhCCC--hHHHHHHHHHHHHHhhccCCCcccchhhhHhHHHHHhhcCCchhhcHhhhHHHH
Q 001584 794 AHDEVIMDAVSDLLPAFAKSMGPH--FAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLV 871 (1049)
Q Consensus 794 ~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l 871 (1049)
+.+.+.++++.++..-++. ...++.-.+. ++..|+..+. ++|..|...+|.+.+..|++ +++..+
T Consensus 899 -----Vqen~IdLvg~IadrgpE~v~aREWMRIcfe-LlelLkahkK-~iRRaa~nTfG~IakaIGPq------dVLatL 965 (1172)
T KOG0213|consen 899 -----VQENCIDLVGTIADRGPEYVSAREWMRICFE-LLELLKAHKK-EIRRAAVNTFGYIAKAIGPQ------DVLATL 965 (1172)
T ss_pred -----HHHHHHHHHHHHHhcCcccCCHHHHHHHHHH-HHHHHHHHHH-HHHHHHHhhhhHHHHhcCHH------HHHHHH
Confidence 3447778999999875552 2234443333 5666665443 68999999999999988865 788999
Q ss_pred HHhcCCCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCCCCCChhHHhhHHHHHHHHHHhCCCCC-C-hhhH
Q 001584 872 LKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSI-P-LNQV 949 (1049)
Q Consensus 872 ~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~-~-~~~~ 949 (1049)
+++|..++...|-...-+++.+++..+. ..+++.|.+-... ++..+......+++-+..+-.+.- + +-.+
T Consensus 966 lnnLkvqeRq~RvcTtvaIaIVaE~c~p------FtVLPalmneYrt--Pe~nVQnGVLkalsf~FeyigemskdYiyav 1037 (1172)
T KOG0213|consen 966 LNNLKVQERQNRVCTTVAIAIVAETCGP------FTVLPALMNEYRT--PEANVQNGVLKALSFMFEYIGEMSKDYIYAV 1037 (1172)
T ss_pred HhcchHHHHHhchhhhhhhhhhhhhcCc------hhhhHHHHhhccC--chhHHHHhHHHHHHHHHHHHHHHhhhHHHHh
Confidence 9999988888887788889999888875 2455555544433 334566666666666655533321 1 4455
Q ss_pred HHHHHhhCCCCCcHHhhHHHHHHHHHHHhhCChhhcchhhHHHHHHHHHhcCCC-CChHHHHHHHHHHHHHHHHhhhh--
Q 001584 950 LPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQILSLVPELVNLFAEVVVSPE-ESSEVKSQVGMAFSHLISLYGQQ-- 1026 (1049)
Q Consensus 950 l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~-- 1026 (1049)
.|.+-+.|- ..|.-....+...+.++.- +.+. ......++.++.-++.+-. .++-+.+++.+.+..+....|+.
T Consensus 1038 ~PlleDAlm-DrD~vhRqta~~~I~Hl~L-g~~g-~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~ 1114 (1172)
T KOG0213|consen 1038 TPLLEDALM-DRDLVHRQTAMNVIKHLAL-GVPG-TGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAM 1114 (1172)
T ss_pred hHHHHHhhc-cccHHHHHHHHHHHHHHhc-CCCC-cCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHH
Confidence 666666653 2244444445555555442 2211 2222222222222222211 24667777888888887777643
Q ss_pred HHHHHhcC
Q 001584 1027 MQPLLSNL 1034 (1049)
Q Consensus 1027 ~~~~~~~l 1034 (1049)
++=++++|
T Consensus 1115 ~~Y~~QGL 1122 (1172)
T KOG0213|consen 1115 LKYCLQGL 1122 (1172)
T ss_pred HHHHHHhc
Confidence 44455655
No 17
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.93 E-value=6.7e-20 Score=192.63 Aligned_cols=672 Identities=14% Similarity=0.162 Sum_probs=444.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcC--CC-cHHHHHHHHhc-CCChhHHHHHHHHHHHhhhh------hccC----
Q 001584 5 LELLLIQFLMPDNDARRQAEDQIKRLAKD--PQ-VVPALVQHLRT-AKTPNVRQLAAVLLRKKITG------HWAK---- 70 (1049)
Q Consensus 5 l~~ll~~~~s~d~~~r~~a~~~L~~~~~~--p~-~~~~l~~il~~-~~~~~~R~~a~~~l~~~i~~------~w~~---- 70 (1049)
+..+|-...++.+.-|+.|--+|..-..+ ++ ....++-++-+ +-+.+-|++-.-.+.+.+-+ .+..
T Consensus 365 i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkILv 444 (1172)
T KOG0213|consen 365 IMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILV 444 (1172)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeEE
Confidence 44555566677888999998888543322 22 23334444443 33566677766665555432 1110
Q ss_pred ------CCHHHHH-----HHHHHH---------HHHHh---hcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhc
Q 001584 71 ------LSPQLKQ-----LVKQSL---------IESIT---LEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFS 127 (1049)
Q Consensus 71 ------~~~~~~~-----~i~~~l---------l~~l~---~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l 127 (1049)
++++... +|...| +..+. ...++.||+..+.+++.+++.. ..|.++|+|...+
T Consensus 445 Viepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasal----gip~llpfLkavc 520 (1172)
T KOG0213|consen 445 VIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASAL----GIPALLPFLKAVC 520 (1172)
T ss_pred EeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHh----CcHHHHHHHHHHh
Confidence 2222221 121111 12221 1257899999999999999875 5788999999999
Q ss_pred cCC-CHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHH
Q 001584 128 QSE-QEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPS 206 (1049)
Q Consensus 128 ~~~-~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 206 (1049)
.|. +|..|+.++.+...++...+-...+|+..++.++..++.| .+..||.-+..+++.+++.. .+.....|...+.+
T Consensus 521 ~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~D-e~qkVR~itAlalsalaeaa-~Pygie~fDsVlkp 598 (1172)
T KOG0213|consen 521 GSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKD-EQQKVRTITALALSALAEAA-TPYGIEQFDSVLKP 598 (1172)
T ss_pred ccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcc-cchhhhhHHHHHHHHHHHhc-CCcchHHHHHHHHH
Confidence 987 8999999999999999999988889999999999999999 88999999999999998876 33455666666666
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhh-hHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhH---h
Q 001584 207 ILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGD-SVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY---N 282 (1049)
Q Consensus 207 ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~---~ 282 (1049)
++..+.+ ..-....+-++++.-++-...+.... +-..++-.+..-++.+ |++.+...+.++..++...+ .
T Consensus 599 Lwkgir~----hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sP--DeemkkivLKVv~qcc~t~Gv~~~ 672 (1172)
T KOG0213|consen 599 LWKGIRQ----HRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSP--DEEMKKIVLKVVKQCCATDGVEPA 672 (1172)
T ss_pred HHHHHHH----ccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCC--hHHHHHHHHHHHHHHhcccCCCHH
Confidence 6665432 21122223333333332222111111 1223333333444444 67777777777777764321 1
Q ss_pred hhhh------------------cCChHHHHHHHhhhhccCC---------CCCCCCCCcHHHHHHHHHHHHHHHcc----
Q 001584 283 SLKK------------------HKLVIPILQVMCPLLAESN---------EAGEDDDLAPDRAAAEVIDTMALNLA---- 331 (1049)
Q Consensus 283 ~~~~------------------~~~~~~il~~l~~~l~~~~---------~~~~d~~~~~~~~a~~~l~~l~~~~~---- 331 (1049)
..+. .....+++.+...+-.... ++-.|+....|+.....++.+...+|
T Consensus 673 y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~di 752 (1172)
T KOG0213|consen 673 YIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADI 752 (1172)
T ss_pred HHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccc
Confidence 1110 0011222222222211111 11123333567778888888887777
Q ss_pred -hhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhc
Q 001584 332 -KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ 410 (1049)
Q Consensus 332 -~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 410 (1049)
+.....++.-+...++.++-... ..+..++.++.....-+++++++|+..++..|+++.+.||..|...++.++..+.
T Consensus 753 derleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlk 831 (1172)
T KOG0213|consen 753 DERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLK 831 (1172)
T ss_pred cHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence 23334555555555655443332 5567888888887777889999999999999999999999999999999987765
Q ss_pred HHHH-hhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhc-cccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHH
Q 001584 411 PEIV-SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG-EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVA 488 (1049)
Q Consensus 411 ~~~~-~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~-~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~ 488 (1049)
.... ..+..+-..|.+.|....++|--..+.|+..++...+ ..+.|-+..+++.|...|.+.+.++++.++..++.++
T Consensus 832 tc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Ia 911 (1172)
T KOG0213|consen 832 TCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIA 911 (1172)
T ss_pred hccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHH
Confidence 3211 1223344556789999999999999999999988875 3567788999999999999999999999999999999
Q ss_pred HHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCCCchhhHHHHH
Q 001584 489 AAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHG 568 (1049)
Q Consensus 489 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~ 568 (1049)
...++... ..+.|.+...++..-......+|..|.+++|.|++++|++ +++..+++.+...+...|-+.-.
T Consensus 912 drgpE~v~--aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq-------dVLatLlnnLkvqeRq~RvcTtv 982 (1172)
T KOG0213|consen 912 DRGPEYVS--AREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ-------DVLATLLNNLKVQERQNRVCTTV 982 (1172)
T ss_pred hcCcccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH-------HHHHHHHhcchHHHHHhchhhhh
Confidence 88776332 1334444444443222233457889999999999999984 57788888888777777777777
Q ss_pred HHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCchhhhccCCCCCCCcchhhcccccceeeeccchhhHHHH
Q 001584 569 FFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAA 648 (1049)
Q Consensus 569 ~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a 648 (1049)
+++-.++.++.- .++|.|++-... +...+....
T Consensus 983 aIaIVaE~c~pF------tVLPalmneYrt-----------------------------------------Pe~nVQnGV 1015 (1172)
T KOG0213|consen 983 AIAIVAETCGPF------TVLPALMNEYRT-----------------------------------------PEANVQNGV 1015 (1172)
T ss_pred hhhhhhhhcCch------hhhHHHHhhccC-----------------------------------------chhHHHHhH
Confidence 788777776632 567888753321 111256677
Q ss_pred HHHHHHHHHHhhhhchhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHH
Q 001584 649 TQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRT 728 (1049)
Q Consensus 649 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 728 (1049)
+++++.+....++.-..|+..+.+.+...+-+.+..-|+.|..++.++.-.+.+ ....+.+..+++.+.|.++
T Consensus 1016 Lkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g-----~g~eda~iHLLN~iWpNIl-- 1088 (1172)
T KOG0213|consen 1016 LKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPG-----TGCEDALIHLLNLIWPNIL-- 1088 (1172)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCC-----cCcHHHHHHHHHHhhhhhc--
Confidence 888888888888877788888888887777676777799999998887543211 1233556677777777664
Q ss_pred hhhCChHHHHHHHHHHHHHHHHHhCCc
Q 001584 729 MTEDDDKDVVAQACTSIVEIINDYGYM 755 (1049)
Q Consensus 729 l~~~~~~~~~~~~~~~l~~~i~~~g~~ 755 (1049)
|+.+.++....+++..+-..+|+.
T Consensus 1089 ---e~sPhviqa~~e~~eg~r~~Lg~~ 1112 (1172)
T KOG0213|consen 1089 ---ETSPHVIQAFDEAMEGLRVALGPQ 1112 (1172)
T ss_pred ---CCChHHHHHHHHHHHHHHHHhchH
Confidence 346677777777776666667754
No 18
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.90 E-value=1e-19 Score=187.45 Aligned_cols=733 Identities=16% Similarity=0.169 Sum_probs=448.9
Q ss_pred CChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHHHHHHH
Q 001584 172 TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHF 251 (1049)
Q Consensus 172 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ 251 (1049)
.....|..+++.|..-+..... ...|..++|.++.. .+. ...+....+.+..+.........+++..++-.
T Consensus 180 G~~~mR~~~lRiLtdkav~fg~---~~vfnkvLp~lm~r---~Le---Dqerhl~vk~idr~Ly~lddl~~pyvhkILvV 250 (975)
T COG5181 180 GGKRMRMEGLRILTDKAVNFGA---AAVFNKVLPMLMSR---ELE---DQERHLVVKLIDRLLYGLDDLKVPYVHKILVV 250 (975)
T ss_pred CCchhhHHHHHHHHHHhhcccH---HHHHHHHHHHHHhh---hhh---hhhhHhHHHHHHHHHHhcccccccceeeEEEE
Confidence 5667788888877654433321 12245555555442 222 23455555555555443333323333222111
Q ss_pred HHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc
Q 001584 252 SLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA 331 (1049)
Q Consensus 252 l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~ 331 (1049)
.-..+- +.+...|...-+.+.+++...+-. + ++ ..-..|.+..|.-+|...+.+.+.++..+|
T Consensus 251 v~plli--ded~~~r~~g~eii~nL~~~~Gl~-----~---~v-------s~mrpDi~~~deYVRnvt~ra~~vva~alg 313 (975)
T COG5181 251 VGPLLI--DEDLKRRCMGREIILNLVYRCGLG-----F---SV-------SSMRPDITSKDEYVRNVTGRAVGVVADALG 313 (975)
T ss_pred eecccc--CccHHHhcccHHHHHHHHHHhccc-----e---ee-------eeccCCcccccHHHHHHHHHHHHHHHHhhC
Confidence 000110 113334444446666666432210 0 11 111122222334788888999999998888
Q ss_pred hhchHHHHHHHHhhhcCC-ChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhc
Q 001584 332 KHVFPPVFEFASVSCQNA-SPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ 410 (1049)
Q Consensus 332 ~~~~~~ll~~l~~~l~~~-~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 410 (1049)
++.++|++.....|. .|+.|+.++.+..+|++-.+-...+|+..++..+-.++.|.+..||..+..+++.+++...
T Consensus 314 ---v~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~ 390 (975)
T COG5181 314 ---VEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVG 390 (975)
T ss_pred ---cHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcC
Confidence 345677777778776 8999999999999999977777788999999999999999999999999999999999988
Q ss_pred HHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh-ccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHH
Q 001584 411 PEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM-GEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (1049)
Q Consensus 411 ~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~-~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~ 489 (1049)
|--...++.++..|.++.+..-..+-.+-+.|.+.++-.. ++...-|-...+..++..+++++.+.+...+..... |.
T Consensus 391 Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~-C~ 469 (975)
T COG5181 391 PYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERI-CD 469 (975)
T ss_pred CcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHH-Hh
Confidence 8767778888888888766543333333333333333222 122233456888889999999988887777765544 44
Q ss_pred Hhhh-hccccHHHHHHHHHHHHhcc-ChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCCCchhhHHHH
Q 001584 490 AAEQ-AFIPYAERVLELLKIFMVLT-NDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTH 567 (1049)
Q Consensus 490 ~~~~-~~~~~~~~~~~~l~~~l~~~-~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~ 567 (1049)
..+. .-..+.+++.|.+.+-.... ...+.+.-.....+-..+++..|. +.+...+++.+.++....|....
T Consensus 470 ~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~-------~~v~~kil~~~~De~ep~r~m~a 542 (975)
T COG5181 470 KVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGD-------PRVSRKILEYYSDEPEPYRKMNA 542 (975)
T ss_pred ccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCC-------hHHHHHHHhhccCCcchhhhhhh
Confidence 4433 22334467777666544321 111111111112344455555553 25666677778888778899888
Q ss_pred HHHHHHHHHcc-cCccCchh-hhhHHHHhhccCCCCCccCCCCCchhhhccCCCCCCCcchhhcccccceeeeccchhhH
Q 001584 568 GFFSNIAGVLE-DGFAQYLP-LVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEK 645 (1049)
Q Consensus 568 ~~l~~l~~~~~-~~~~~~l~-~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k 645 (1049)
.+..++...+| .+|..-+. .++..++.+++.++.. + .
T Consensus 543 ~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t-------~----------------------~------------ 581 (975)
T COG5181 543 GLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTT-------V----------------------G------------ 581 (975)
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcccc-------c----------------------c------------
Confidence 99999988887 34544433 3455566555422110 0 0
Q ss_pred HHHHHHHHHHHHHhhhhchhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHH
Q 001584 646 AAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIF 725 (1049)
Q Consensus 646 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 725 (1049)
..+.+++.....++--..||+..++..++..+++..+++|..|+.+.+.+....+.+ +.. ..+..+-..|
T Consensus 582 -~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c------~e~---~~l~klg~iL 651 (975)
T COG5181 582 -LILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKAC------GET---KELAKLGNIL 651 (975)
T ss_pred -EEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhc------chH---HHHHHHhHHH
Confidence 011122222223334467999999999999999999999999999887776554421 111 1122222223
Q ss_pred HHHhhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhHHHHHHHHh
Q 001584 726 IRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSD 805 (1049)
Q Consensus 726 ~~~l~~~~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1049)
.+.+. +..++++..++.++..+..+.+-..+.|-+..+++.+.++|..++.. +.....+
T Consensus 652 yE~lg-e~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~K--------------------v~~nti~ 710 (975)
T COG5181 652 YENLG-EDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQK--------------------VVANTIA 710 (975)
T ss_pred HHhcC-cccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHH--------------------HhhhHHH
Confidence 33333 45899999999999999998887777788888889999999987643 2224557
Q ss_pred HHHHHHHHhCCC--hHHHHHHHHHHHHHhhccCCCcccchhhhHhHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhH
Q 001584 806 LLPAFAKSMGPH--FAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNR 883 (1049)
Q Consensus 806 ~l~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr 883 (1049)
++++++...++. ...++.-.+. ++..|++-+. ++|..|...+|.+.+..|++ +++..++++|..++...|
T Consensus 711 lvg~I~~~~peyi~~rEWMRIcfe-Lvd~Lks~nK-eiRR~A~~tfG~Is~aiGPq------dvL~~LlnnLkvqeRq~R 782 (975)
T COG5181 711 LVGTICMNSPEYIGVREWMRICFE-LVDSLKSWNK-EIRRNATETFGCISRAIGPQ------DVLDILLNNLKVQERQQR 782 (975)
T ss_pred HHHHHHhcCcccCCHHHHHHHHHH-HHHHHHHhhH-HHHHhhhhhhhhHHhhcCHH------HHHHHHHhcchHHHHHhh
Confidence 788888876652 2234433333 5566665443 68999999999999988865 788999999998888888
Q ss_pred HHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCCCCCChhHHhhHHHHHHHHHHhCCCC-CC-hhhHHHHHHhhCCCCC
Q 001584 884 RNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQS-IP-LNQVLPVLLKVLPLKE 961 (1049)
Q Consensus 884 ~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~-~~-~~~~l~~~l~~lp~~~ 961 (1049)
-...-+++.+++..+. -.+++.|..-.+ .++..+......+++-+..+-.+. .+ +-.+.|.+-+.|-- .
T Consensus 783 vctsvaI~iVae~cgp------fsVlP~lm~dY~--TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltD-r 853 (975)
T COG5181 783 VCTSVAISIVAEYCGP------FSVLPTLMSDYE--TPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTD-R 853 (975)
T ss_pred hhhhhhhhhhHhhcCc------hhhHHHHHhccc--CchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcc-c
Confidence 8888899999998875 234455443332 234556666677777766653332 12 44556666666642 2
Q ss_pred cHHhhHHHHHHHHHHHhhCChhhc--chhhHHHHHH-HHHhcCCCCChHHHHHHHHHHHHHHHHhhh--hHHHHHhcC
Q 001584 962 DFEESMAVYNCISTLVLSSNPQIL--SLVPELVNLF-AEVVVSPEESSEVKSQVGMAFSHLISLYGQ--QMQPLLSNL 1034 (1049)
Q Consensus 962 d~~e~~~~~~~l~~l~~~~~~~~~--~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~l 1034 (1049)
|.-....+...+.+++-. .+... ...-.+++++ ..++. .++-..+.+.+.+..+.+..|+ -|+=+|++|
T Consensus 854 D~vhRqta~nvI~Hl~Ln-c~gtg~eda~IHLlNllwpNIle---~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~qGL 927 (975)
T COG5181 854 DPVHRQTAMNVIRHLVLN-CPGTGDEDAAIHLLNLLWPNILE---PSPHVIQSFDEGMESFATVLGSGAMMKYVQQGL 927 (975)
T ss_pred chHHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHhhhhccC---CCcHHHHHHHHHHHHHHHHhccHHHHHHHHHhc
Confidence 444455555556655533 22211 1222333322 11221 3466788888888888887764 345556666
No 19
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.90 E-value=4.2e-17 Score=198.58 Aligned_cols=813 Identities=15% Similarity=0.144 Sum_probs=481.1
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHHhc-C----------CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhcc
Q 001584 3 QSLELLLIQFLMP--DNDARRQAEDQIKRLAK-D----------PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWA 69 (1049)
Q Consensus 3 ~~l~~ll~~~~s~--d~~~r~~a~~~L~~~~~-~----------p~~~~~l~~il~~~~~~~~R~~a~~~l~~~i~~~w~ 69 (1049)
.++..+++.+.+. +.+.|++|..+|..+.+ + .++++.|+..|. +.++.+|..|+..|.+.-.
T Consensus 13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~-sg~~~vk~nAaaaL~nLS~---- 87 (2102)
T PLN03200 13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR-SGTLGAKVNAAAVLGVLCK---- 87 (2102)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhc----
Confidence 4577888888765 78899999999977643 2 456788889886 4568889888867666521
Q ss_pred CCCHHHH-----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCC------cchHHHHHHhccCCC---HHHH
Q 001584 70 KLSPQLK-----QLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEW------PDLLPFLFQFSQSEQ---EEHR 135 (1049)
Q Consensus 70 ~~~~~~~-----~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w------~~ll~~l~~~l~~~~---~~~~ 135 (1049)
.++.+ ......|+..|.+ .+...|..++.++..++.....+..| ...+|.|+..+++++ ..++
T Consensus 88 --~e~nk~~Iv~~GaIppLV~LL~s-Gs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~ 164 (2102)
T PLN03200 88 --EEDLRVKVLLGGCIPPLLSLLKS-GSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVE 164 (2102)
T ss_pred --CHHHHHHHHHcCChHHHHHHHHC-CCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHH
Confidence 12333 2334467778875 68999999999999998753111122 567899999888763 2244
Q ss_pred HHHHHHHHHhhhhhhhcccccH-HHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHH
Q 001584 136 EVALILFSSLTETIGQTFRPHF-ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQC 214 (1049)
Q Consensus 136 ~~al~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 214 (1049)
..+..+|..++......-.... ...++.+...+.+ +++.++..|+.++.+++...++......-...+|.+++.+
T Consensus 165 ~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS-~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL--- 240 (2102)
T PLN03200 165 GLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSS-GNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLL--- 240 (2102)
T ss_pred HHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHH---
Confidence 5566777777754432111111 2357888888888 8899999999998888766433211111245677777764
Q ss_pred hhc-CCHHHHHHHHHHHHHHhccCCcchhhhHH-HHHHHHHHhhhCCC-------CChHHHHHHHHHHHHHHhhhHhhhh
Q 001584 215 LAS-GEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHN-------LEPNTRHQAIQIISWLAKYKYNSLK 285 (1049)
Q Consensus 215 l~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~~~~~~-------~~~~~r~~a~~~l~~l~~~~~~~~~ 285 (1049)
.+ ++..++..|.++|..++...+..-...+. ..++.++..+..++ .....+.+|+..+..++...+..+.
T Consensus 241 -~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~ 319 (2102)
T PLN03200 241 -GQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALIL 319 (2102)
T ss_pred -ccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHH
Confidence 33 45678999999999998765433222211 12333333333221 2355688899999988754322100
Q ss_pred h------cC-ChHHH------HHHHhhhhccCCCCCCCCCCcHH----HHHHHHHHHHHHH-----------------cc
Q 001584 286 K------HK-LVIPI------LQVMCPLLAESNEAGEDDDLAPD----RAAAEVIDTMALN-----------------LA 331 (1049)
Q Consensus 286 ~------~~-~~~~i------l~~l~~~l~~~~~~~~d~~~~~~----~~a~~~l~~l~~~-----------------~~ 331 (1049)
. .. ....+ +..+++.+...++ ..+ ..+...|..+.++ +|
T Consensus 320 ~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~-------~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~g 392 (2102)
T PLN03200 320 YLGELSESPRSPAPIADTLGALAYALMVFDSSAE-------STRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYG 392 (2102)
T ss_pred HHHHhhcccchHHHHHHHHhhHHHHHHhcCCchh-------hhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcC
Confidence 0 00 00000 1111111111100 000 0111222222211 11
Q ss_pred hhch------HHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHH-HHHHHHHhhcCCCChhHHHHHHHHHHH
Q 001584 332 KHVF------PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLE-SVLHIVLGALRDPEQFVRGAASFALGQ 404 (1049)
Q Consensus 332 ~~~~------~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~ 404 (1049)
...+ ....+.+..++...+...+..++++|.+++.+..+....... ..+|.++..|.++++.+|..|+++++.
T Consensus 393 N~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~n 472 (2102)
T PLN03200 393 NAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAI 472 (2102)
T ss_pred ChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1100 112233444556677889999999999999876554333322 368999999999999999999999999
Q ss_pred hHhhhcHHHHhh-hhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccch--HHHHHHHHHhhcCCCHhHHHHHH
Q 001584 405 FAEYLQPEIVSH-YESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAALENSPRNLQETCM 481 (1049)
Q Consensus 405 l~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~--~~ll~~l~~~l~~~~~~v~~~~~ 481 (1049)
++.......... -...+|.|++.|.+++.++|..|+++|.+++..- +.....+ ...++.|+.++++.+...+..+.
T Consensus 473 La~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~-~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa 551 (2102)
T PLN03200 473 LTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHS-EDIRACVESAGAVPALLWLLKNGGPKGQEIAA 551 (2102)
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHH
Confidence 987543322211 1468999999999999999999999999998632 2222222 24677788888888999999999
Q ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhc-cccc--hHHHHHHHHhccCCC
Q 001584 482 SAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRAR-MEPI--LPPFVEAAISGFGLE 558 (1049)
Q Consensus 482 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~-~~~~--~~~i~~~l~~~l~~~ 558 (1049)
.++..++...... .++.+..++...+ ...+..+++.++.+......+. .... ....++.+.+.++++
T Consensus 552 ~AL~nLi~~~d~~-------~I~~Lv~LLlsdd---~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg 621 (2102)
T PLN03200 552 KTLTKLVRTADAA-------TISQLTALLLGDL---PESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS 621 (2102)
T ss_pred HHHHHHHhccchh-------HHHHHHHHhcCCC---hhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC
Confidence 9999987643222 2234444454332 2345556777777765333211 1100 123455566667778
Q ss_pred CchhhHHHHHHHHHHHHHcccCccC-chhhhhHHHHhhccCCCCCccCCCCCchhhhccCCCCCCCcchhhcccccceee
Q 001584 559 FSELREYTHGFFSNIAGVLEDGFAQ-YLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISV 637 (1049)
Q Consensus 559 ~~~~r~~~~~~l~~l~~~~~~~~~~-~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 637 (1049)
+...++.+..++.+++..-.+.... .....+|+++..++..
T Consensus 622 s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~-------------------------------------- 663 (2102)
T PLN03200 622 KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN-------------------------------------- 663 (2102)
T ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC--------------------------------------
Confidence 8899999999999999755432221 1235677777666422
Q ss_pred eccchhhHHHHHHHHHHHHHHhhhhchhh-HH-HHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHH
Q 001584 638 RTGVLDEKAAATQALGLFALHTKSSYAPF-LE-ESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAR 715 (1049)
Q Consensus 638 ~~~~~~~k~~a~~~l~~~~~~~~~~~~~~-~~-~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 715 (1049)
..+.+..|.++|+.++......-..+ +. .+++.+..++...+.+++..|+.+|..++.... ...
T Consensus 664 ---~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e-----------~~~ 729 (2102)
T PLN03200 664 ---TEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE-----------VAA 729 (2102)
T ss_pred ---ChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch-----------HHH
Confidence 11257788999999886443322222 32 356677788888888999999999988876321 111
Q ss_pred HH-HHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHhCCcc-cHHHHH--HHHHHHHHHHHhhhhhcCCCCCCCCCccc
Q 001584 716 EI-LDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMA-VEPYMS--RLVDATLLLLREESTCQQPDNDSDIEDDD 791 (1049)
Q Consensus 716 ~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~i~~~g~~~-~~~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~~~~~ 791 (1049)
.+ -...++.+.+.+++. ..+.+..+..++..++....... +..+.. ..+..+...|+...
T Consensus 730 ei~~~~~I~~Lv~lLr~G-~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~--------------- 793 (2102)
T PLN03200 730 EALAEDIILPLTRVLREG-TLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTD--------------- 793 (2102)
T ss_pred HHHhcCcHHHHHHHHHhC-ChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCC---------------
Confidence 11 134467777777665 45567777778877776443222 222222 12333444444321
Q ss_pred cchhhHHHHHHHHhHHHHHHHHh-CCChH-HHHH------HHHHHHHHhhccCCCcccchhhhHhHHHHHhhcCCchhhc
Q 001584 792 DTAHDEVIMDAVSDLLPAFAKSM-GPHFA-PIFA------KLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAY 863 (1049)
Q Consensus 792 ~~~~~~~~~~~~~~~l~~l~~~~-~~~~~-~~~~------~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~ 863 (1049)
.+......+.+.+..+++.- |..+. |-|. .-+..+++++...++ .+...|+.++..+++.-+.-...+
T Consensus 794 ---~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p-~~~~kai~il~~~~~~~~~~~~~~ 869 (2102)
T PLN03200 794 ---LDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHP-LVQDKAIEILSRLCRDQPVVLGDL 869 (2102)
T ss_pred ---cchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCCh-HHHHHHHHHHHHHhccChhHHHHH
Confidence 11111113567777777742 22221 1111 223346666755444 678899999999887533222222
Q ss_pred H---hhhHHHHHH-hcCCCChHhHHHHHHHHHHHHhhcCcc------hhhHHHHHHHhhhhhhCC
Q 001584 864 V---DRVMPLVLK-ELASPDAMNRRNAAFCVGELCKNGGES------ALKYYGDILRGLYPLFGD 918 (1049)
Q Consensus 864 ~---~~i~~~l~~-~l~~~~~~vr~~a~~~lg~l~~~~~~~------~~~~~~~~l~~L~~~l~~ 918 (1049)
+ +.-+..+-+ .+++.+.+||-..+..+-..++...+. -..|+..+++.|..++..
T Consensus 870 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (2102)
T PLN03200 870 IANASKCISSLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLKQ 934 (2102)
T ss_pred HhcccchHHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHhc
Confidence 1 223333333 344566777765554444444433332 234677788888888764
No 20
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=3.2e-17 Score=173.54 Aligned_cols=582 Identities=14% Similarity=0.197 Sum_probs=349.7
Q ss_pred ChHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhccCCCHHHHH
Q 001584 1 MAQSLELLLIQFLMP--DNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAKLSPQLKQ 77 (1049)
Q Consensus 1 m~~~l~~ll~~~~s~--d~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~-~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~ 77 (1049)
|++.++|++.+...| |...|++|.+.+++++..|+.+..+.+++... .++.+|.++...|...+...+...+...+.
T Consensus 1 ~mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~elq 80 (980)
T KOG2021|consen 1 MMDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNELQ 80 (980)
T ss_pred CchHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHHH
Confidence 788999999999765 89999999999999999999999999998764 689999999999999988888888888899
Q ss_pred HHHHHHHHHHh-----hc---CCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCH-HHHHHHHHHHHHhhhh
Q 001584 78 LVKQSLIESIT-----LE---HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQE-EHREVALILFSSLTET 148 (1049)
Q Consensus 78 ~i~~~ll~~l~-----~e---~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~-~~~~~al~~l~~l~~~ 148 (1049)
.+|..+...+. .+ ..+.++++++++++.+....+|. .|+.++-.+...+.-+.. +-..--++++..+-..
T Consensus 81 lvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~-~WnsfF~dlmsv~~~~s~~~~~dfflkvllaIdsE 159 (980)
T KOG2021|consen 81 LVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPD-CWNSFFDDLMSVFQVDSAISGLDFFLKVLLAIDSE 159 (980)
T ss_pred HHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHhcccchhhHHHHHHHHHHhhhH
Confidence 99988877665 21 36789999999999999998995 899999888887754331 1122223333333222
Q ss_pred hhhc------------------c-cccHHHHHHHHHHhhC---CCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHH
Q 001584 149 IGQT------------------F-RPHFADMQALLLKCLQ---DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPS 206 (1049)
Q Consensus 149 ~~~~------------------~-~~~~~~l~~~l~~~l~---~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 206 (1049)
..+. + ...++++.....+.+. ...++.+-..++.|+++++.|++-+ ......+++.
T Consensus 160 iad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdIn--LIaNd~f~nL 237 (980)
T KOG2021|consen 160 IADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDIN--LIANDYFLNL 237 (980)
T ss_pred hhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhh--hhhchhHHHH
Confidence 2110 0 1223445444444443 2136778888889999998888522 1111233333
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhh-------------------------------------------
Q 001584 207 ILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGD------------------------------------------- 243 (1049)
Q Consensus 207 ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~------------------------------------------- 243 (1049)
+... +. -++.|.+|++|+.+++....+-++.
T Consensus 238 Ly~f----l~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~ 311 (980)
T KOG2021|consen 238 LYKF----LN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELT 311 (980)
T ss_pred HHHH----Hh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeee
Confidence 3333 22 3456667777777666542211111
Q ss_pred --------------------hHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHh-h-h--hhcCChHHHHHHHhh
Q 001584 244 --------------------SVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYN-S-L--KKHKLVIPILQVMCP 299 (1049)
Q Consensus 244 --------------------~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~-~-~--~~~~~~~~il~~l~~ 299 (1049)
.+..+++++++.+.+. .+++....+.||+.....-.+ . . .....+..++..++.
T Consensus 312 ~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e--~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~k 389 (980)
T KOG2021|consen 312 IIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNE--FDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFK 389 (980)
T ss_pred hhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhccc--chhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHH
Confidence 0111222333333222 122222233333322111000 0 0 001133445555444
Q ss_pred hhcc-----CCCCCCC-CC----CcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhh---cCCChhHHhHHHHHHHHHhh
Q 001584 300 LLAE-----SNEAGED-DD----LAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSC---QNASPKYREAAVTAIGIISE 366 (1049)
Q Consensus 300 ~l~~-----~~~~~~d-~~----~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l---~~~~~~~r~~al~~l~~i~~ 366 (1049)
.++. ++++..+ ++ .+.|......++.+...-|+-.+..+-..+...+ +..+|..-+.|+..+..++|
T Consensus 390 qicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE 469 (980)
T KOG2021|consen 390 QICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGE 469 (980)
T ss_pred HHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence 4432 2222111 11 2345555555555555444433333333333333 34679999999999999998
Q ss_pred cChHH---------HH-HhHHHHHHHHHh--hcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHH--HhccCCC
Q 001584 367 GCAEW---------MK-EKLESVLHIVLG--ALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCIL--NALEDES 432 (1049)
Q Consensus 367 ~~~~~---------~~-~~l~~i~~~l~~--~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~--~~l~~~~ 432 (1049)
+.+.. .. ..+..+++.+.. ...++|+.|+..-+..+.++...+..+ .++++-++...+ +++.+.+
T Consensus 470 ~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e-sq~ip~vL~aFld~rglhn~n 548 (980)
T KOG2021|consen 470 CLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE-SQKIPLVLNAFLDSRGLHNKN 548 (980)
T ss_pred ccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc-hhhhHHHHHHHccchhccccc
Confidence 75421 11 123344454442 346899999999999898887776533 345566666665 4677788
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCC------------HhHHHHHHHHHHHHHHHh---hhhccc
Q 001584 433 DEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSP------------RNLQETCMSAIGSVAAAA---EQAFIP 497 (1049)
Q Consensus 433 ~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~------------~~v~~~~~~~l~~l~~~~---~~~~~~ 497 (1049)
.+||.+|...+.+|++.+.+.+.||.++++..+..++.... .+-+...++++|.++... .+.-..
T Consensus 549 e~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaa 628 (980)
T KOG2021|consen 549 ENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAA 628 (980)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHH
Confidence 99999999999999999999999999999999998883311 122445666666554321 111112
Q ss_pred cHHHH---------HHHHHHHHhccChhhhhh----HHHHHHHHHHHHHhhchhc-------cccchHHHHHHHHhccC-
Q 001584 498 YAERV---------LELLKIFMVLTNDEDLRS----RARATELLGLVAESVGRAR-------MEPILPPFVEAAISGFG- 556 (1049)
Q Consensus 498 ~~~~~---------~~~l~~~l~~~~~~~~~~----r~~a~~~l~~l~~~~~~~~-------~~~~~~~i~~~l~~~l~- 556 (1049)
|.+.+ +..+...+. ++++... ...++.+++.++++..... .......+.+.++-.+.
T Consensus 629 y~~~litpl~~~~~igl~~a~la--sde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~ 706 (980)
T KOG2021|consen 629 YANTLITPLILDQIIGLLFAQLA--SDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSF 706 (980)
T ss_pred HHhcccChHHHHHHHHHHHHHHh--ccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhh
Confidence 22221 112222222 2222111 2234456666665442111 00112234444443333
Q ss_pred -CCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhc
Q 001584 557 -LEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSC 596 (1049)
Q Consensus 557 -~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~ 596 (1049)
.....+|......+++|..++|+++-||+|+.+..+++..
T Consensus 707 f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~ 747 (980)
T KOG2021|consen 707 FNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSST 747 (980)
T ss_pred ccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcC
Confidence 2345799999999999999999999999999999999754
No 21
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.89 E-value=4.9e-19 Score=182.53 Aligned_cols=669 Identities=13% Similarity=0.148 Sum_probs=419.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcC--CC-cHHHHHHHHhc-CCChhHHHHHHHHHHHhhhh------hccC----
Q 001584 5 LELLLIQFLMPDNDARRQAEDQIKRLAKD--PQ-VVPALVQHLRT-AKTPNVRQLAAVLLRKKITG------HWAK---- 70 (1049)
Q Consensus 5 l~~ll~~~~s~d~~~r~~a~~~L~~~~~~--p~-~~~~l~~il~~-~~~~~~R~~a~~~l~~~i~~------~w~~---- 70 (1049)
+..+|-....+.+.-|+++--.|..-..+ |. ....++-++-+ +-+.+-|++-.-++.+.+-+ .+..
T Consensus 170 v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhkILv 249 (975)
T COG5181 170 VYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKILV 249 (975)
T ss_pred HHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceeeEEE
Confidence 44455555677788888888888433322 32 22333333332 33556677766666555432 1110
Q ss_pred ------CCHHHHH-----HHHHHHHHH--Hh----------hcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhc
Q 001584 71 ------LSPQLKQ-----LVKQSLIES--IT----------LEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFS 127 (1049)
Q Consensus 71 ------~~~~~~~-----~i~~~ll~~--l~----------~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l 127 (1049)
++++... +|...|... |. ...++.||+..+.+++.++... ..++++|++...+
T Consensus 250 Vv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~al----gv~~llpfl~a~c 325 (975)
T COG5181 250 VVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADAL----GVEELLPFLEALC 325 (975)
T ss_pred EeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhh----CcHHHHHHHHHHh
Confidence 2222211 111122111 11 1257899999999999999875 4688999999999
Q ss_pred cCC-CHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHH
Q 001584 128 QSE-QEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPS 206 (1049)
Q Consensus 128 ~~~-~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 206 (1049)
.|. +|+.|+.++++...|+...+....+|+..++..+..++.| .+..||.-+..+++.+++... +.....|...+-+
T Consensus 326 ~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D-~~~~vRi~tA~alS~lae~~~-Pygie~fd~vl~p 403 (975)
T COG5181 326 GSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKD-RSRFVRIDTANALSYLAELVG-PYGIEQFDEVLCP 403 (975)
T ss_pred cCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhc-cceeeeehhHhHHHHHHHhcC-CcchHHHHHHHHH
Confidence 886 8999999999999999999988889999999999999999 888899999999999888763 3345556555555
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHhcc-CCcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhh---Hh
Q 001584 207 ILNVSRQCLASGEEDVAVIAFEIFDELIES-PAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYK---YN 282 (1049)
Q Consensus 207 ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~---~~ 282 (1049)
++....+. .. ....+-+++...++-. .|.+..-.-......++..+..+ +++.+...+.+...+.+.. |.
T Consensus 404 Lw~g~~~h---rg-k~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~sp--deemkk~~l~v~~~C~~v~~~tp~ 477 (975)
T COG5181 404 LWEGASQH---RG-KELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSP--DEEMKKDLLVVERICDKVGTDTPW 477 (975)
T ss_pred HHHHHHhc---CC-chHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCc--hhhcchhHHHHHHHHhccCCCCHH
Confidence 55543221 11 1222222222222211 12222222223333333333333 2333322222222222110 00
Q ss_pred hhhh------------------cCCh----------------HHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHH
Q 001584 283 SLKK------------------HKLV----------------IPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMAL 328 (1049)
Q Consensus 283 ~~~~------------------~~~~----------------~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~ 328 (1049)
..+. .... +.+...++..+.+ +....|+.++...+.+..
T Consensus 478 ~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~D-------e~ep~r~m~a~~vsri~~ 550 (975)
T COG5181 478 KLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSD-------EPEPYRKMNAGLVSRIFS 550 (975)
T ss_pred HHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccC-------CcchhhhhhhHHHHHHHH
Confidence 0000 0000 1111111211111 112456667777777777
Q ss_pred Hcc-----hhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 001584 329 NLA-----KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALG 403 (1049)
Q Consensus 329 ~~~-----~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~ 403 (1049)
.+| +.....++..+...++.++-... --+-+++.+.....-..++++..|+..++..|+++.|.||..|....+
T Consensus 551 ~lg~~~~dErleerl~d~il~Afqeq~~t~~-~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~ 629 (975)
T COG5181 551 RLGRLGFDERLEERLYDSILNAFQEQDTTVG-LILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMG 629 (975)
T ss_pred hcccccccHHHHHHHHHHHHHHHHhcccccc-EEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 666 23334445555445544332111 111223333222223345789999999999999999999999999999
Q ss_pred HhHhhhcHHH-HhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhc-cccccchHHHHHHHHHhhcCCCHhHHHHHH
Q 001584 404 QFAEYLQPEI-VSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG-EEILPFLDPLMGKLLAALENSPRNLQETCM 481 (1049)
Q Consensus 404 ~l~~~~~~~~-~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~-~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~ 481 (1049)
.++..++... ...+..+-..|.+.+....++|--..+.|+..+....+ ..+.|-...+++.+...+.+.+.++....+
T Consensus 630 sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti 709 (975)
T COG5181 630 SLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTI 709 (975)
T ss_pred HHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHH
Confidence 8887765321 12344455667888998889999888888888877764 457888999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCCCch
Q 001584 482 SAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSE 561 (1049)
Q Consensus 482 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 561 (1049)
..++.++...++...+ .+.|.+...++..-.+....+|..|.+++|.|++++|++ +++..+++.+...+..
T Consensus 710 ~lvg~I~~~~peyi~~--rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq-------dvL~~LlnnLkvqeRq 780 (975)
T COG5181 710 ALVGTICMNSPEYIGV--REWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ-------DVLDILLNNLKVQERQ 780 (975)
T ss_pred HHHHHHHhcCcccCCH--HHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH-------HHHHHHHhcchHHHHH
Confidence 9999999887764321 334444444443222233467889999999999999985 5778888888877777
Q ss_pred hhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCchhhhccCCCCCCCcchhhcccccceeeeccc
Q 001584 562 LREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGV 641 (1049)
Q Consensus 562 ~r~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 641 (1049)
.|-....+++-.++.+|.- .++|.|++-... +.
T Consensus 781 ~RvctsvaI~iVae~cgpf------sVlP~lm~dY~T-----------------------------------------Pe 813 (975)
T COG5181 781 QRVCTSVAISIVAEYCGPF------SVLPTLMSDYET-----------------------------------------PE 813 (975)
T ss_pred hhhhhhhhhhhhHhhcCch------hhHHHHHhcccC-----------------------------------------ch
Confidence 7877777888888877732 567887753321 11
Q ss_pred hhhHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHH
Q 001584 642 LDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTV 721 (1049)
Q Consensus 642 ~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1049)
..+....+++++.+....+..-..|+..+.+.+-..+.+.++.-|+.|.+.+.+++-.+.+ ....+....+++.+
T Consensus 814 ~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g-----tg~eda~IHLlNll 888 (975)
T COG5181 814 ANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG-----TGDEDAAIHLLNLL 888 (975)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC-----cccHHHHHHHHHHh
Confidence 1245667788888888888777788888888888877777888899999999888654321 11224455666666
Q ss_pred HHHHHHHhhhCChHHHHHHHHHHHHHHHHHhCCcccHH
Q 001584 722 MNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEP 759 (1049)
Q Consensus 722 ~~~l~~~l~~~~~~~~~~~~~~~l~~~i~~~g~~~~~~ 759 (1049)
.|.++ |+.+.+.....+++..+-..+|.+.+-.
T Consensus 889 wpNIl-----e~sPhvi~~~~Eg~e~~~~~lg~g~~m~ 921 (975)
T COG5181 889 WPNIL-----EPSPHVIQSFDEGMESFATVLGSGAMMK 921 (975)
T ss_pred hhhcc-----CCCcHHHHHHHHHHHHHHHHhccHHHHH
Confidence 66653 4567777777777777777778654433
No 22
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.87 E-value=1.4e-17 Score=202.79 Aligned_cols=791 Identities=14% Similarity=0.134 Sum_probs=463.8
Q ss_pred hHHHHHHhccCC--CHHHHHHHHHHHHHhhhhhhhcccccH---HHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCC
Q 001584 119 LLPFLFQFSQSE--QEEHREVALILFSSLTETIGQTFRPHF---ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTND 193 (1049)
Q Consensus 119 ll~~l~~~l~~~--~~~~~~~al~~l~~l~~~~~~~~~~~~---~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~ 193 (1049)
-...+.+-+.++ ++..++.++.-+..+.....+. ...+ ...+|.+...|.. .+..+|..|+.++.++......
T Consensus 14 ~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~en-R~~Ia~~aGaIP~LV~lL~s-g~~~vk~nAaaaL~nLS~~e~n 91 (2102)
T PLN03200 14 SVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEA-RKAIGSHSQAMPLLVSLLRS-GTLGAKVNAAAVLGVLCKEEDL 91 (2102)
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHH-HHHHHHccCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCHHH
Confidence 344444445443 4566777777777776554322 1111 3467888888887 7888999999888888765321
Q ss_pred hhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCC-cchh-h--hHHHHHHHHHHhhhCCCC-ChHHHHH
Q 001584 194 GAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA-PLLG-D--SVKSIVHFSLEVSSSHNL-EPNTRHQ 268 (1049)
Q Consensus 194 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~-~~~~-~--~~~~l~~~l~~~~~~~~~-~~~~r~~ 268 (1049)
...+. ...-+|+++.. +++++.+.+..+..+|..+..... +... . .-...++.++.++.++.. +..++..
T Consensus 92 k~~Iv-~~GaIppLV~L----L~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~ 166 (2102)
T PLN03200 92 RVKVL-LGGCIPPLLSL----LKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGL 166 (2102)
T ss_pred HHHHH-HcCChHHHHHH----HHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHH
Confidence 11111 25667777776 456778889999999999886542 1111 0 112345555555555432 2335667
Q ss_pred HHHHHHHHHhhhHhhh---hhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc---hhch-HHHHHH
Q 001584 269 AIQIISWLAKYKYNSL---KKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA---KHVF-PPVFEF 341 (1049)
Q Consensus 269 a~~~l~~l~~~~~~~~---~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~---~~~~-~~ll~~ 341 (1049)
++.++..++....... ...+ .++.+..++...+. .....|..++..++...+ ..+. ...+|.
T Consensus 167 Av~AL~nLs~~~en~~~~IIeaG----aVp~LV~LLsS~d~-------~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~ 235 (2102)
T PLN03200 167 LTGALRNLCGSTDGFWSATLEAG----GVDILVKLLSSGNS-------DAQANAASLLARLMMAFESSISKVLDAGAVKQ 235 (2102)
T ss_pred HHHHHHHHhcCccchHHHHHHcC----CHHHHHHHHcCCCH-------HHHHHHHHHHHHHHcCChHHHHHHHHCCCHHH
Confidence 7778888876544321 1222 45556666654322 455666676666654432 1111 334566
Q ss_pred HHhhhcC-CChhHHhHHHHHHHHHhhcChHHHHHhH-HHHHHHHHhhcCCCC---------hhHHHHHHHHHHHhHhhhc
Q 001584 342 ASVSCQN-ASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPE---------QFVRGAASFALGQFAEYLQ 410 (1049)
Q Consensus 342 l~~~l~~-~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~---------~~vr~~a~~~l~~l~~~~~ 410 (1049)
+.+.+++ .+...|+.|.++|+.++.+..+.-.... ...+|.++..+..++ ...+..|.|+|++++...
T Consensus 236 LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~- 314 (2102)
T PLN03200 236 LLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM- 314 (2102)
T ss_pred HHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc-
Confidence 6666755 4568899999999999987543222111 134566666665444 345889999999999775
Q ss_pred HHHHhhhhhHHHHHHHhccCC-ChHHHHHHHHHHHHHHHhhcccc--ccch--HHHHHHHHHhhcCCCHh-HHHHHHHHH
Q 001584 411 PEIVSHYESVLPCILNALEDE-SDEVKEKSYYALAAFCEDMGEEI--LPFL--DPLMGKLLAALENSPRN-LQETCMSAI 484 (1049)
Q Consensus 411 ~~~~~~~~~ll~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~~~~l--~~~~--~~ll~~l~~~l~~~~~~-v~~~~~~~l 484 (1049)
..+++.|.+.+++. +..+...+++++..+...+.... ...+ ..+...|.+++++.++. +++.+..++
T Consensus 315 -------~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eAL 387 (2102)
T PLN03200 315 -------SALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEAL 387 (2102)
T ss_pred -------hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHH
Confidence 24777777777655 33445667888888866553211 1111 23557788888887655 477888887
Q ss_pred HHHHHHhh--hhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccch-HHHHHHHHhccCCCCch
Q 001584 485 GSVAAAAE--QAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPIL-PPFVEAAISGFGLEFSE 561 (1049)
Q Consensus 485 ~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~ 561 (1049)
..+..... ..+ +-....+.|..++...+. ..+..+..++..++..- .+...... ...++.+++.+.+++..
T Consensus 388 asl~gN~~l~~~L--~~~daik~LV~LL~~~~~---evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s~~ 461 (2102)
T PLN03200 388 ASLYGNAYLSRKL--NHAEAKKVLVGLITMATA---DVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSSEQ 461 (2102)
T ss_pred HHhcCChHHHHHH--HhccchhhhhhhhccCCH---HHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCCHH
Confidence 65432210 011 012244556666654432 45667778887776331 11110000 01344455556667788
Q ss_pred hhHHHHHHHHHHHHHcccCccCc-hhhhhHHHHhhccCCCCCccCCCCCchhhhccCCCCCCCcchhhcccccceeeecc
Q 001584 562 LREYTHGFFSNIAGVLEDGFAQY-LPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTG 640 (1049)
Q Consensus 562 ~r~~~~~~l~~l~~~~~~~~~~~-l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 640 (1049)
.++.+..+++.++....+.-... -...+|.|.+.+...+
T Consensus 462 iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~---------------------------------------- 501 (2102)
T PLN03200 462 QQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGS---------------------------------------- 501 (2102)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC----------------------------------------
Confidence 99999999999986443322111 1356788887775321
Q ss_pred chhhHHHHHHHHHHHHHHhhhhchhhHH--HHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHH
Q 001584 641 VLDEKAAATQALGLFALHTKSSYAPFLE--ESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREIL 718 (1049)
Q Consensus 641 ~~~~k~~a~~~l~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 718 (1049)
.+.|+.|+++|+.++.. .......+. ..++.++.++...+..+|..|+.+|..++... ....+
T Consensus 502 -~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~---------d~~~I---- 566 (2102)
T PLN03200 502 -QKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA---------DAATI---- 566 (2102)
T ss_pred -HHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc---------chhHH----
Confidence 12688899999998763 222222231 34555666666667888999999998886531 11222
Q ss_pred HHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHhCCcccH-H--HHHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchh
Q 001584 719 DTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVE-P--YMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAH 795 (1049)
Q Consensus 719 ~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~i~~~g~~~~~-~--~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 795 (1049)
+.+...+.. ++......+++.++.++......... . ....-++.+..++.+..
T Consensus 567 ----~~Lv~LLls-dd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs------------------- 622 (2102)
T PLN03200 567 ----SQLTALLLG-DLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK------------------- 622 (2102)
T ss_pred ----HHHHHHhcC-CChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC-------------------
Confidence 333333433 34566666777777776543321110 0 01223455555555432
Q ss_pred hHHHHHHHHhHHHHHHHHhCCChHHHH-HHHHHHHHHhhccCCCcccchhhhHhHHHHHhhcCCch-hhcH-hhhHHHHH
Q 001584 796 DEVIMDAVSDLLPAFAKSMGPHFAPIF-AKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPI-AAYV-DRVMPLVL 872 (1049)
Q Consensus 796 ~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~-~~~~-~~i~~~l~ 872 (1049)
......++.++..++....+.....+ ...+|.++..++..+. .++..+...|+.+.......- ..++ ...+|+++
T Consensus 623 -~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~-~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~ 700 (2102)
T PLN03200 623 -EETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTE-AVATQSARALAALSRSIKENRKVSYAAEDAIKPLI 700 (2102)
T ss_pred -HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCh-HHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHH
Confidence 12233555666666654333222222 3578889999987665 568888888888887432221 2223 35899999
Q ss_pred HhcCCCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCCCCCChhHHhhHHHHHHHHHHhCCCCCCh------
Q 001584 873 KELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPL------ 946 (1049)
Q Consensus 873 ~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~------ 946 (1049)
+.+.+.+.+++..|+.+|+.++........-.-...+..|..++. +..+..++||+.++..+...+|..-.+
T Consensus 701 ~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr--~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~ 778 (2102)
T PLN03200 701 KLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLR--EGTLEGKRNAARALAQLLKHFPVDDVLKDSVQC 778 (2102)
T ss_pred HHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHH--hCChHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 999999999999999999999987643211011344566666664 456889999999999999876522101
Q ss_pred hhHHHHHHhhCCCCCcHH--hhHHHHHHHHHHHhhCC-------h-hhc----chhhHHHHHHHHHhcCCCCChHHHHHH
Q 001584 947 NQVLPVLLKVLPLKEDFE--ESMAVYNCISTLVLSSN-------P-QIL----SLVPELVNLFAEVVVSPEESSEVKSQV 1012 (1049)
Q Consensus 947 ~~~l~~~l~~lp~~~d~~--e~~~~~~~l~~l~~~~~-------~-~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~ 1012 (1049)
.-.+..+++.|.-. |.+ ....+...+..+.+... + .++ ..+..++..+ .. ..++++.+.
T Consensus 779 ~g~v~~l~~~L~~~-~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l----~~--~~p~~~~ka 851 (2102)
T PLN03200 779 RGTVLALVDLLNST-DLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCL----AE--GHPLVQDKA 851 (2102)
T ss_pred hCcHHHHHHHHhcC-CcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHH----Hc--CChHHHHHH
Confidence 12333444444322 222 22336666666665421 1 122 3344555444 22 467899999
Q ss_pred HHHHHHHHHHhhhhHHHHH
Q 001584 1013 GMAFSHLISLYGQQMQPLL 1031 (1049)
Q Consensus 1013 ~~~l~~l~~~~~~~~~~~~ 1031 (1049)
+++|.++.++.|...-.++
T Consensus 852 i~il~~~~~~~~~~~~~~~ 870 (2102)
T PLN03200 852 IEILSRLCRDQPVVLGDLI 870 (2102)
T ss_pred HHHHHHHhccChhHHHHHH
Confidence 9999999988775544443
No 23
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.86 E-value=2.4e-16 Score=179.90 Aligned_cols=556 Identities=16% Similarity=0.222 Sum_probs=355.1
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhc--HHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhcccc
Q 001584 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ--PEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEI 454 (1049)
Q Consensus 377 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l 454 (1049)
..+...+...+.+|+|..|.+++--|-.+..+++ ++..-+.+++...+.+.|.|.+.-+|..|...++-+-+--+..
T Consensus 817 ~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~- 895 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS- 895 (1702)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch-
Confidence 3556677788889999999999877767777665 4566677888899999999998888888887776443332222
Q ss_pred ccchHHHHHHHHHhhcCCCHh---HHH-HHHHHHHHHHHH-hhhhccccHHHHH---------HHHHHHHhc--cChhhh
Q 001584 455 LPFLDPLMGKLLAALENSPRN---LQE-TCMSAIGSVAAA-AEQAFIPYAERVL---------ELLKIFMVL--TNDEDL 518 (1049)
Q Consensus 455 ~~~~~~ll~~l~~~l~~~~~~---v~~-~~~~~l~~l~~~-~~~~~~~~~~~~~---------~~l~~~l~~--~~~~~~ 518 (1049)
.-..++..|+..+..+..+ +-+ .-+-.=|.+... .|..+..| .++. .++.++++. .+-.+.
T Consensus 896 --~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTY-KELc~LASdl~qPdLVYKFM~LAnh~A~wn 972 (1702)
T KOG0915|consen 896 --LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTY-KELCNLASDLGQPDLVYKFMQLANHNATWN 972 (1702)
T ss_pred --hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHH-HHHHHHHhhcCChHHHHHHHHHhhhhchhh
Confidence 2334555555544332211 000 000000111100 01112221 1111 123344432 222333
Q ss_pred hhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccC
Q 001584 519 RSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNL 598 (1049)
Q Consensus 519 ~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~ 598 (1049)
.-++.| .-++.|+..-| +...||++.+++.++..--+++..++.+....|+.+..-.......|+..|+..|+..+..
T Consensus 973 Sk~GaA-fGf~~i~~~a~-~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~ 1050 (1702)
T KOG0915|consen 973 SKKGAA-FGFGAIAKQAG-EKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTS 1050 (1702)
T ss_pred cccchh-hchHHHHHHHH-HhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccc
Confidence 334444 44566666654 5899999999999998666889999999999999999877778889999999999977642
Q ss_pred CCCCccCCCCCchhhhccCCCCCCCcchhhcccccceeeeccchhhHHHHHHHHHHHHHHhh-hhchhhHHHHHHHHHhh
Q 001584 599 DDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTK-SSYAPFLEESLKILVRH 677 (1049)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~ 677 (1049)
. .| .+|+++|-+|..+...-+ ..+...+++++..+.+.
T Consensus 1051 k-----------ew------------------------------RVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRv 1089 (1702)
T KOG0915|consen 1051 K-----------EW------------------------------RVREASCLALADLLQGRPFDQVKEKLPELWEAAFRV 1089 (1702)
T ss_pred h-----------hH------------------------------HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 1 11 279999999999887654 34667888999999999
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHhCCccc
Q 001584 678 ASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAV 757 (1049)
Q Consensus 678 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~i~~~g~~~~ 757 (1049)
.++..++||.+|-.+...+.+-+...... ..+...++.++.++|.++..-.-..-.+++.-.+..+.++.+..| ..+
T Consensus 1090 mDDIKEsVR~aa~~~~~~lsKl~vr~~d~--~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg-~~l 1166 (1702)
T KOG0915|consen 1090 MDDIKESVREAADKAARALSKLCVRICDV--TNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG-KEL 1166 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccc--CCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhch-hhh
Confidence 99999999999888777766554433222 334556788899999887643334567788888899999999888 577
Q ss_pred HHHHHHHHHHHHHHHHhhhh-------hcCCCCCCC-CC-ccccchhhHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHH
Q 001584 758 EPYMSRLVDATLLLLREEST-------CQQPDNDSD-IE-DDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDP 828 (1049)
Q Consensus 758 ~~~~~~l~~~l~~~l~~~~~-------~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ 828 (1049)
.|+++.+.+.+...+..-.+ ++..+.+.+ .| .+.+.....-.++++-+|+..+-. ..+.++.|.
T Consensus 1167 kP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~-------~vLeelip~ 1239 (1702)
T KOG0915|consen 1167 KPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDI-------SVLEELIPR 1239 (1702)
T ss_pred cchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhH-------HHHHHHHHH
Confidence 78888877776655433211 111000000 00 000111111233455445443222 367789999
Q ss_pred HHHhhccCCCcccchhhhHhHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCc-chhhHHHH
Q 001584 829 LMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGE-SALKYYGD 907 (1049)
Q Consensus 829 l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~-~~~~~~~~ 907 (1049)
+.+.++.+-....|..+...+.-++..+|.+..||...++..++.++.|.++.+|..-+.++|.++....+ ++..++..
T Consensus 1240 l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~ 1319 (1702)
T KOG0915|consen 1240 LTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIET 1319 (1702)
T ss_pred HHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 99999887766678999999999999999999999999999999999999999999999999999998866 55556655
Q ss_pred HHHhhhhhhCCCCCChhHHhhHHHHHHHHHHhCCCCCC--hhhHHHHHHhhCCCCCcHHhhHHHHHHHHHHHhhCChh-h
Q 001584 908 ILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIP--LNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQ-I 984 (1049)
Q Consensus 908 ~l~~L~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~--~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~~-~ 984 (1049)
++..+. . +++.. +.-+|+.+..|..+.++.+. .+.++|..+-.+. +++.++..-++-+..=+...... +
T Consensus 1320 ~l~~~l---~-k~es~--~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~--ee~Ka~q~Lw~dvW~e~vsggagtv 1391 (1702)
T KOG0915|consen 1320 LLADLL---G-KDESL--KSISCATISNIANYSQEMLKNYASAILPLIFLAMH--EEEKANQELWNDVWAELVSGGAGTV 1391 (1702)
T ss_pred HHHHHh---c-cCCCc--cchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCCCcchh
Confidence 554332 2 22221 13344444445555555443 5678887654442 22344455555544433333222 2
Q ss_pred cchhhHHHHHHHH
Q 001584 985 LSLVPELVNLFAE 997 (1049)
Q Consensus 985 ~~~~~~i~~~~~~ 997 (1049)
.-+.+.++..+.+
T Consensus 1392 rl~~~eiLn~ice 1404 (1702)
T KOG0915|consen 1392 RLYLLEILNLICE 1404 (1702)
T ss_pred hhhHHHHHHHHHH
Confidence 2255555554444
No 24
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3e-14 Score=154.73 Aligned_cols=529 Identities=14% Similarity=0.196 Sum_probs=331.7
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHH
Q 001584 3 QSLELLLIQFLMP-DNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ 81 (1049)
Q Consensus 3 ~~l~~ll~~~~s~-d~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~ 81 (1049)
+.+..++..++++ +.+.....+++|..++..|+.+..-.++++.+...++|-++|+.|...+.++|+..+++..+.++.
T Consensus 7 a~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~~evqyFGAltL~~ki~~~~e~~~~~~~~qL~~ 86 (982)
T KOG2022|consen 7 ATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKSSEVQYFGALTLHDKINTRWEECPANEAVQLKL 86 (982)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCchhHHHHHhHHHHHHHHHhhhccCChhHHHHHHH
Confidence 3577888899876 778888888999999999999999999998888889999999999999999999999999999999
Q ss_pred HHHHHHhh--cCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCC-H----HHHH-HHHHHHHHhhhhhh---
Q 001584 82 SLIESITL--EHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQ-E----EHRE-VALILFSSLTETIG--- 150 (1049)
Q Consensus 82 ~ll~~l~~--e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~-~----~~~~-~al~~l~~l~~~~~--- 150 (1049)
.++..+.. .....|-+..+..++.++-+..| +.||.-+..+.+.++... + +.+. .-++.|..+.+...
T Consensus 87 klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~-d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~p~e~q~~~ 165 (982)
T KOG2022|consen 87 KLFLILSRFAGGPKLVLNKLCASLASLILYMVP-DLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSFMPAEFQHVT 165 (982)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHcc-ccCCchHHHHHHHHhcccCccccchhhHHHHHHHhccCcHhhhhcc
Confidence 98887763 23556777778888887776667 499999998888876532 1 2222 22334433332221
Q ss_pred ----------hcccccHHHHHHHHHHhhCCCC--Ch-----HHHHHHHHHHHHhhcccCChh--hHHH------------
Q 001584 151 ----------QTFRPHFADMQALLLKCLQDET--SN-----RVRIAALKAIGSFLEFTNDGA--EVVK------------ 199 (1049)
Q Consensus 151 ----------~~~~~~~~~l~~~l~~~l~~~~--~~-----~vr~~a~~~l~~~~~~~~~~~--~~~~------------ 199 (1049)
..+......+.+++...++... .+ -.+.++++|...++.+..-+. ...-
T Consensus 166 l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c~~i~~~ll~~l~~s~ 245 (982)
T KOG2022|consen 166 LPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTGMDCDQITQVLLDVLGQST 245 (982)
T ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhhc
Confidence 1122223334455555555411 22 356677888877766432110 0000
Q ss_pred -------------------------------------HH----hhhHHHHHHHHHH------hhcCC--HHHHHHHHHHH
Q 001584 200 -------------------------------------FR----EFIPSILNVSRQC------LASGE--EDVAVIAFEIF 230 (1049)
Q Consensus 200 -------------------------------------~~----~~~~~ll~~l~~~------l~~~~--~~~~~~~~~~l 230 (1049)
+. .+++.....+... ..+.+ ++.....+.+.
T Consensus 246 ~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d~~~e~i~~~~~i~ 325 (982)
T KOG2022|consen 246 EGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQEEENADASEEEIVTFLAIT 325 (982)
T ss_pred cccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 00 1111111111111 11111 22222223333
Q ss_pred HHHhccCCcch---------hhhHHHHHHHHHHhhhCCC---CChHHHHHHHHHHHHHHhhhHhhh------hhc----C
Q 001584 231 DELIESPAPLL---------GDSVKSIVHFSLEVSSSHN---LEPNTRHQAIQIISWLAKYKYNSL------KKH----K 288 (1049)
Q Consensus 231 ~~l~~~~~~~~---------~~~~~~l~~~l~~~~~~~~---~~~~~r~~a~~~l~~l~~~~~~~~------~~~----~ 288 (1049)
...++.+.+.+ ...+..+++.++...+-+. +++.+.-..+.||.++.+..-... ++. +
T Consensus 326 v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e~~~~~~~i~~~q 405 (982)
T KOG2022|consen 326 VSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINETQQIKKQILSQQ 405 (982)
T ss_pred HHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhccCCcchhHHHHH
Confidence 33333322211 1223334444444333332 234566677888888865322111 111 1
Q ss_pred ChHHHHHHHhhhhccC--------CCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCC-----hhHHh
Q 001584 289 LVIPILQVMCPLLAES--------NEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNAS-----PKYRE 355 (1049)
Q Consensus 289 ~~~~il~~l~~~l~~~--------~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~-----~~~r~ 355 (1049)
.+.++++.+++.+.-+ ..|+.|...+.|+...+.+...-..+|+..+..+...+.+.+.+.+ |..-+
T Consensus 406 Iy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tE 485 (982)
T KOG2022|consen 406 IYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTE 485 (982)
T ss_pred HHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHH
Confidence 2223444444444322 2222222334566666666666667778888888888888887765 88999
Q ss_pred HHHHHHHHHhhcChHHHHHhHHHHHHHHHhh-cCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChH
Q 001584 356 AAVTAIGIISEGCAEWMKEKLESVLHIVLGA-LRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDE 434 (1049)
Q Consensus 356 ~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 434 (1049)
+++..+..+++..+....+.++.++...... ++-+++..-..+...+|.++.++++ ..-+++..+|.|++++..+...
T Consensus 486 aci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e-~P~~ln~sl~~L~~~Lh~sk~s 564 (982)
T KOG2022|consen 486 ACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGE-HPMYLNPSLPLLFQGLHNSKES 564 (982)
T ss_pred HHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhc-CCcccCchHHHHHHHhcCchHH
Confidence 9999999999987766666666666655432 3346888888999999999999864 2447788999999999865443
Q ss_pred HHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCC--CHhHHHHHHHHHHHHHHHhh-hhccccHHHHHHHHHHHHh
Q 001584 435 VKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS--PRNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFMV 511 (1049)
Q Consensus 435 v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~--~~~v~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~l~~~l~ 511 (1049)
..+...+..+++.++.++.||.+.++...-..+... .+..|..++.++|.+..... +...+|+..++..+..-++
T Consensus 565 --~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle 642 (982)
T KOG2022|consen 565 --EQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLE 642 (982)
T ss_pred --HHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHH
Confidence 445666999999999999999999999988887764 46689999999999987764 5566777666654444333
Q ss_pred c-----cChhhhhhHHH-HHHHHHHHHHhh
Q 001584 512 L-----TNDEDLRSRAR-ATELLGLVAESV 535 (1049)
Q Consensus 512 ~-----~~~~~~~~r~~-a~~~l~~l~~~~ 535 (1049)
. -++++...|.. -+.+++.+..+.
T Consensus 643 ~~l~~~i~~~e~~l~~~~~l~~iS~LftSL 672 (982)
T KOG2022|consen 643 INLAPGIDDQENHLRIAFQLNTISALFTSL 672 (982)
T ss_pred HhhcCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 2 12233333322 135566655544
No 25
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=4e-13 Score=148.56 Aligned_cols=705 Identities=14% Similarity=0.169 Sum_probs=396.0
Q ss_pred HHHHHHHhc--CCChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHhccCCCC
Q 001584 38 PALVQHLRT--AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEH-SAPVRRASANVVSIIAKYAVPAG 114 (1049)
Q Consensus 38 ~~l~~il~~--~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~-~~~vr~~~~~~l~~i~~~~~~~~ 114 (1049)
..+++++.. ++++..|..|-..|++. +-.......+++.+.++. +-.||..++--+.......++..
T Consensus 4 ~~l~~~~~~T~d~d~~~R~~AE~~L~q~----------~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~ 73 (1010)
T KOG1991|consen 4 QSLLQIFRATIDSDAKERKAAEQQLNQL----------EKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSH 73 (1010)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHh----------hcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCcc
Confidence 345666654 56789999999888765 223345566778777654 56679888888877654333322
Q ss_pred C--------C----cchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHH
Q 001584 115 E--------W----PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALK 182 (1049)
Q Consensus 115 ~--------w----~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~ 182 (1049)
. . +-+-..++..+.......|..--.++..|+.. .+-++|+.+++.+...|++ ++...-..|+-
T Consensus 74 ~~~g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~---D~p~~Wp~l~d~i~~~Lqs-~~~~~vy~aLl 149 (1010)
T KOG1991|consen 74 EAPGRPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKA---DYPEQWPGLLDKIKNLLQS-QDANHVYGALL 149 (1010)
T ss_pred CCCCCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhc---CCcccchhHHHHHHHHhcC-cchhhHHHHHH
Confidence 1 1 11333444444444445555555556555433 2237899999999999998 88778888888
Q ss_pred HHHHhhcccC---Ch---hhHHHHHhhhHHHHHHHHHHhhcCCHHH---HHHHHHHHHHHhccC-Ccch--hhhHHHHHH
Q 001584 183 AIGSFLEFTN---DG---AEVVKFREFIPSILNVSRQCLASGEEDV---AVIAFEIFDELIESP-APLL--GDSVKSIVH 250 (1049)
Q Consensus 183 ~l~~~~~~~~---~~---~~~~~~~~~~~~ll~~l~~~l~~~~~~~---~~~~~~~l~~l~~~~-~~~~--~~~~~~l~~ 250 (1049)
|+..++...+ ++ .....+..++|.+++.....+..++... .+..++++..+..+. |..+ ...+..-++
T Consensus 150 ~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~ 229 (1010)
T KOG1991|consen 150 CLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWME 229 (1010)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHH
Confidence 8877765432 21 2233467889999999888887766543 456666666654433 2222 224445556
Q ss_pred HHHHhhhCC------CCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHH
Q 001584 251 FSLEVSSSH------NLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVID 324 (1049)
Q Consensus 251 ~l~~~~~~~------~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~ 324 (1049)
+++.+++.+ ..+++.|.. +.|+- +++ +.-.++..++.+..+...-. ......+...+.
T Consensus 230 l~l~i~~rpvP~E~l~~d~e~R~~----~~wwK------~KK--Wa~~~L~Rlf~Ryg~~~~~~----~~y~~Fa~~f~~ 293 (1010)
T KOG1991|consen 230 LFLSILNRPVPVEVLSLDPEDRSS----WPWWK------CKK--WALHILNRLFERYGSPSLVV----PEYKEFAQMFLK 293 (1010)
T ss_pred HHHHHHcCCCChhcccCChhhccc----ccchh------hHH--HHHHHHHHHHHHhCCccccc----hhhHHHHHHHHH
Confidence 666665543 234555543 22221 111 22234444554443332100 012223333333
Q ss_pred HHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhc-----ChHHHHHhHHHHHH-HHHhhc-----------
Q 001584 325 TMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEG-----CAEWMKEKLESVLH-IVLGAL----------- 387 (1049)
Q Consensus 325 ~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~-----~~~~~~~~l~~i~~-~l~~~l----------- 387 (1049)
..+ ..++..++..+.++-+ .-|..-+.-..++..+..+ ..+.+++|+..++. .+++++
T Consensus 294 n~~----~~ile~~lk~l~~~~~-~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe 368 (1010)
T KOG1991|consen 294 NFA----QGILEVFLKILEQWRQ-QLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWE 368 (1010)
T ss_pred HHH----HHHHHHHHHHHHHHHh-cccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHh
Confidence 333 2233444444444333 4454444444444444443 24567788877764 555655
Q ss_pred CCCChhHHH-------------HHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcc--------CCChHHHHHHHHHHHHH
Q 001584 388 RDPEQFVRG-------------AASFALGQFAEYLQPEIVSHYESVLPCILNALE--------DESDEVKEKSYYALAAF 446 (1049)
Q Consensus 388 ~d~~~~vr~-------------~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~--------~~~~~v~~~a~~~l~~l 446 (1049)
+||+..+|. +|..++..++...+ ...++.+++.+...++ ..+++-+..|+.+++++
T Consensus 369 ~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~---ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl 445 (1010)
T KOG1991|consen 369 EDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRG---KETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSL 445 (1010)
T ss_pred cCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcc---hhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHH
Confidence 244444543 66666666666553 2344555555555554 22467778899999999
Q ss_pred HHhhccccccc---hH-HHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhcc--ccHHHHHHHHHHHHhccChhhhhh
Q 001584 447 CEDMGEEILPF---LD-PLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFI--PYAERVLELLKIFMVLTNDEDLRS 520 (1049)
Q Consensus 447 ~~~~~~~l~~~---~~-~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~ 520 (1049)
++.+.+. .|| ++ .+++.+++.++++-..+|.+|++.++.++.. +|. ..+.+.+....+.+.+ +.+..+
T Consensus 446 ~~~L~K~-s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~---df~d~~~l~~ale~t~~~l~~--d~~lPV 519 (1010)
T KOG1991|consen 446 ASILLKK-SPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSI---DFKDPNNLSEALELTHNCLLN--DNELPV 519 (1010)
T ss_pred HHHHccC-CchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhc---cCCChHHHHHHHHHHHHHhcc--CCcCch
Confidence 9766432 233 33 3455667778888999999999999988743 222 2344555666666643 445566
Q ss_pred HHHHHHHHHHHHHhhc--hhccccchHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccC
Q 001584 521 RARATELLGLVAESVG--RARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNL 598 (1049)
Q Consensus 521 r~~a~~~l~~l~~~~~--~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~ 598 (1049)
|..|.-++..+..... ++.+.++++++|+.+++..+.-+. +....++..++..+++++.||...+...|-.....
T Consensus 520 ~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En---d~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k 596 (1010)
T KOG1991|consen 520 RVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN---DDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLK 596 (1010)
T ss_pred hhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch---hHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Confidence 7666667776665442 356899999999998886553221 23456788888889999999988887777544321
Q ss_pred CCCCccCCCCCchhhhccCCCCCCCcchhhcccccceeeeccchhhHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHhhh
Q 001584 599 DDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHA 678 (1049)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 678 (1049)
--.. +.++++. + ++|+ +.++|.+
T Consensus 597 ~l~~--~~~~~~~--------------~----------------ddk~--iaA~GiL----------------------- 619 (1010)
T KOG1991|consen 597 VLQT--SEDEDES--------------D----------------DDKA--IAASGIL----------------------- 619 (1010)
T ss_pred HHhc--cCCCCcc--------------c----------------hHHH--HHHHHHH-----------------------
Confidence 0000 0000000 0 0231 1111111
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHhCCcccH
Q 001584 679 SYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVE 758 (1049)
Q Consensus 679 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~i~~~g~~~~~ 758 (1049)
+++.+++.++ ...++.++++-+.++|.+...+.++ -.++...+++-+..+.- -...+.
T Consensus 620 ------------~Ti~Til~s~-------e~~p~vl~~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~--~~~~Is 677 (1010)
T KOG1991|consen 620 ------------RTISTILLSL-------ENHPEVLKQLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTF--LSKEIS 677 (1010)
T ss_pred ------------HHHHHHHHHH-------hccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhh--hhcccC
Confidence 1111222221 1123334444444445444444332 22333333333322211 112345
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhHHHHHHHHhHHHHHHHHhCCChH---HHHHHHHHHHHHhhcc
Q 001584 759 PYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFA---PIFAKLFDPLMKFAKS 835 (1049)
Q Consensus 759 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~---~~~~~l~~~l~~~l~~ 835 (1049)
+.+..+++.+..++.+.. -...+.++..+..++..-++.+. .|...++..+.+.+.+
T Consensus 678 p~mW~ll~li~e~~~~~~--------------------~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~ 737 (1010)
T KOG1991|consen 678 PIMWGLLELILEVFQDDG--------------------IDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTS 737 (1010)
T ss_pred HHHHHHHHHHHHHHhhhh--------------------HHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcC
Confidence 666777777776666431 11233445555655544333333 3666777777777765
Q ss_pred CC-CcccchhhhHhHHHHHhhcCCchhhcHhhhHHHHHHhcCC--CChHhHHHHHH
Q 001584 836 SR-PLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELAS--PDAMNRRNAAF 888 (1049)
Q Consensus 836 ~~-~~~~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~--~~~~vr~~a~~ 888 (1049)
.+ ....+..|..++..++-.|+..+.+|++.++...+.++.. .+...|..+..
T Consensus 738 e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~le 793 (1010)
T KOG1991|consen 738 ENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTREVETSELRVMLLE 793 (1010)
T ss_pred CCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhccccchHHHHHHHH
Confidence 32 2345778999999999999888888999999999988876 44555655544
No 26
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=9.1e-17 Score=183.28 Aligned_cols=619 Identities=14% Similarity=0.187 Sum_probs=377.5
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccC
Q 001584 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (1049)
Q Consensus 158 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~ 237 (1049)
..+...+...+.+ +++..|.+++--|..++.+.....+ .....+.+...+.+.+.++|+=....|.+-+.-+.+..
T Consensus 817 ~~~~~~l~~~~~s-~nph~R~A~~VWLLs~vq~l~~~~~---v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelg 892 (1702)
T KOG0915|consen 817 TIILKLLDTLLTS-PNPHERQAGCVWLLSLVQYLGQQPE---VVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELG 892 (1702)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhccCch---hhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecC
Confidence 3356667777777 9999999999888888887753222 22334556666666776666544444433333222221
Q ss_pred CcchhhhHHHHHHHHHHhhhCCCCChHHHHHHH-HHHHHHHhhhHhhhhhcCChHHHHHHHhh--hhccCCCCCCCCCCc
Q 001584 238 APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAI-QIISWLAKYKYNSLKKHKLVIPILQVMCP--LLAESNEAGEDDDLA 314 (1049)
Q Consensus 238 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~-~~l~~l~~~~~~~~~~~~~~~~il~~l~~--~l~~~~~~~~d~~~~ 314 (1049)
.. ..+..-+ .++.++...+.+ ..+.... ..+++ .+.+.. +.+..+
T Consensus 893 d~------------------------~~k~~LV~sL~~tl~~Gkr~---~~~vs~e--TelFq~G~Lg~Tp---~Gg~is 940 (1702)
T KOG0915|consen 893 DS------------------------SLKKSLVDSLVNTLTGGKRK---AIKVSEE--TELFQEGTLGKTP---DGGKIS 940 (1702)
T ss_pred Cc------------------------hhHHHHHHHHHHHHhccccc---cceeccc--hhcccCCcCCCCC---CCCcch
Confidence 11 1111111 122233221110 0000000 00000 011100 011112
Q ss_pred HHHHHHHHHHHHHHHcch-hchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChh
Q 001584 315 PDRAAAEVIDTMALNLAK-HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQF 393 (1049)
Q Consensus 315 ~~~~a~~~l~~l~~~~~~-~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~ 393 (1049)
.+ +-|-.++..+|+ ++ +..++.=.-++..|..|.+|.+.++.|++...+.+.+++++++|.+...=-||++.
T Consensus 941 TY----KELc~LASdl~qPdL---VYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~ 1013 (1702)
T KOG0915|consen 941 TY----KELCNLASDLGQPDL---VYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKK 1013 (1702)
T ss_pred HH----HHHHHHHhhcCChHH---HHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHH
Confidence 22 335566666663 22 23333222345789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhc-cccccchHHHHHHHHHhhcCC
Q 001584 394 VRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG-EEILPFLDPLMGKLLAALENS 472 (1049)
Q Consensus 394 vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~-~~l~~~~~~ll~~l~~~l~~~ 472 (1049)
||.+-....+.+...-+..+..|+..++..|+..+.+...|||+++|.||..+++.-+ +.+...+++++..++..+++-
T Consensus 1014 Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI 1093 (1702)
T KOG0915|consen 1014 VQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI 1093 (1702)
T ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998889888887777889999999999999999999999999999999998764 345677889999999998887
Q ss_pred CHhHHHHH---HHHHHHHHHHhhh-----hccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccch
Q 001584 473 PRNLQETC---MSAIGSVAAAAEQ-----AFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPIL 544 (1049)
Q Consensus 473 ~~~v~~~~---~~~l~~l~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~ 544 (1049)
...||+.+ ..+++.++-.+.+ .-...++.++|.+..--.. +.-..+|..++.++..++..-|+ .+.|++
T Consensus 1094 KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim--s~v~evr~~si~tl~dl~Kssg~-~lkP~~ 1170 (1702)
T KOG0915|consen 1094 KESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM--SKVNEVRRFSIGTLMDLAKSSGK-ELKPHF 1170 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc--cchHHHHHHHHHHHHHHHHhchh-hhcchh
Confidence 77777655 4555555544443 2234556667766432111 12335788889999999998876 789999
Q ss_pred HHHHHHHHhccCCCCchhhHHHH-HHHH-----------HHHHHcc-----cCccC-----chhhhhHHHHhhccCCCCC
Q 001584 545 PPFVEAAISGFGLEFSELREYTH-GFFS-----------NIAGVLE-----DGFAQ-----YLPLVVPLAFSSCNLDDGS 602 (1049)
Q Consensus 545 ~~i~~~l~~~l~~~~~~~r~~~~-~~l~-----------~l~~~~~-----~~~~~-----~l~~i~~~ll~~~~~~~~~ 602 (1049)
+.++..+++....-.+.+-.+.. .+.+ +.++..+ ....+ .+..++|.+.+.+...
T Consensus 1171 ~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~s--- 1247 (1702)
T KOG0915|consen 1171 PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGS--- 1247 (1702)
T ss_pred hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc---
Confidence 99999998877644343322211 1100 0011000 00001 1233334444333211
Q ss_pred ccCCCCCchhhhccCCCCCCCcchhhcccccceeeeccchhhHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHhhhcCCC
Q 001584 603 AVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFH 682 (1049)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 682 (1049)
+++ ..|.++...+..++..++..+.||...++..+++...+.+
T Consensus 1248 --------------------------------Vgl-----~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRN 1290 (1702)
T KOG0915|consen 1248 --------------------------------VGL-----GTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRN 1290 (1702)
T ss_pred --------------------------------CCC-----CcchhHHHHHHHHHHHhccccCcchhHHHHHHhhcccccc
Confidence 111 2478888899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 001584 683 EDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMS 762 (1049)
Q Consensus 683 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~ 762 (1049)
+.+|++-..+++.+++.. .++..+.++..++..+. .+++... ...+..+.. |....+..+..+..
T Consensus 1291 esv~kafAsAmG~L~k~S---------s~dq~qKLie~~l~~~l---~k~es~~--siscatis~-Ian~s~e~Lkn~as 1355 (1702)
T KOG0915|consen 1291 ESVRKAFASAMGYLAKFS---------SPDQMQKLIETLLADLL---GKDESLK--SISCATISN-IANYSQEMLKNYAS 1355 (1702)
T ss_pred HHHHHHHHHHHHHHHhcC---------ChHHHHHHHHHHHHHHh---ccCCCcc--chhHHHHHH-HHHhhHHHHHhhHH
Confidence 999999999999998752 33445566555555443 2222221 334444444 44444445566777
Q ss_pred HHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhHHHHHHHHhHHHHHHHHhCCChHH-HHHHHHHHHHHhhccCCCccc
Q 001584 763 RLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAP-IFAKLFDPLMKFAKSSRPLQD 841 (1049)
Q Consensus 763 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~ 841 (1049)
.+++.++=..... ++..+.+. -++...+.. -|..-.+ |...++..++....++.++..
T Consensus 1356 aILPLiFLa~~ee-----------------~Ka~q~Lw---~dvW~e~vs-ggagtvrl~~~eiLn~iceni~nn~~w~l 1414 (1702)
T KOG0915|consen 1356 AILPLIFLAMHEE-----------------EKANQELW---NDVWAELVS-GGAGTVRLYLLEILNLICENITNNESWKL 1414 (1702)
T ss_pred HHHHHHHHHHhHH-----------------HHHHHHHH---HHHHHHhCC-CCcchhhhhHHHHHHHHHHHhccchHHHH
Confidence 7777665332211 01111121 222222221 1222233 566666666666666666777
Q ss_pred chhhhHhHHHHHhhcCCc-hhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcC
Q 001584 842 RTMVVATLAEVARDMGSP-IAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGG 898 (1049)
Q Consensus 842 r~~a~~~l~~l~~~~~~~-~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~ 898 (1049)
|..+...+..+....... ..|+.-.+.+.+..++....-+-++....++......+.
T Consensus 1415 r~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GRiwdGKe~iLKAl~~~~~a~~ 1472 (1702)
T KOG0915|consen 1415 RKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGRIWDGKEEILKALASAFEAGL 1472 (1702)
T ss_pred HHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhH
Confidence 777777777666654444 347788888888888886655544444444444444333
No 27
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.80 E-value=1.1e-12 Score=136.69 Aligned_cols=473 Identities=19% Similarity=0.260 Sum_probs=301.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHH
Q 001584 5 LELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLI 84 (1049)
Q Consensus 5 l~~ll~~~~s~d~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll 84 (1049)
+.++++....+++..+++|+..|..++.+|+.+..--.|+.++..|+.+-.|..+|.+.|...|+-++.+.+..+++...
T Consensus 16 lDkVVttfyqg~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~pqskyiALs~LdklIttkWkllp~~~r~GiRnyvv 95 (1053)
T COG5101 16 LDKVVTTFYQGDGRKQEQAQRILTKFQELPDAWTKADYILNNSKLPQSKYIALSLLDKLITTKWKLLPEGMRQGIRNYVV 95 (1053)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHhCchHHHHHHHHHhcccCcchhhhHHHHHHHHHHhhhhhCCcHHHHHHHHHHH
Confidence 56788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh-cCCHHHHH-------HHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhh------
Q 001584 85 ESITL-EHSAPVRR-------ASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG------ 150 (1049)
Q Consensus 85 ~~l~~-e~~~~vr~-------~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~------ 150 (1049)
+.+.+ .++..+|. .+-..+-.|++.++|+ .||.++|.+.+..+ .+.++.+..+.++..+.+..-
T Consensus 96 ~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~-nWP~FIpeli~~S~-~s~~vCeNnmivLklLsEEvFdfSaeq 173 (1053)
T COG5101 96 QLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPR-NWPTFIPELINVSQ-ISMEVCENNMIVLKLLSEEVFDFSAEQ 173 (1053)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhccc-ccchhhHHHHhhcc-chHHHHhccHHHHHHhHHHHHhccHHH
Confidence 88763 23455554 3455566688899995 99999999998765 566788888877777665432
Q ss_pred ----------hcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCH
Q 001584 151 ----------QTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEE 220 (1049)
Q Consensus 151 ----------~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 220 (1049)
.++...+++++.+..+.|....++..-.+.+..+.++++|.+-... +...+++.+...+. ..+
T Consensus 174 mTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~yI------feTnIieLv~~~f~-s~p 246 (1053)
T COG5101 174 MTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDYI------FETNIIELVLEHFN-SMP 246 (1053)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchhHH------HHHHHHHHHHHHhc-cCC
Confidence 2334567889999999888767888899999999999998863211 11223333322221 334
Q ss_pred HHHHHHHHHHHHHhccC--Cc-------ch---------------------------------hhhHHHHHHHHHH----
Q 001584 221 DVAVIAFEIFDELIESP--AP-------LL---------------------------------GDSVKSIVHFSLE---- 254 (1049)
Q Consensus 221 ~~~~~~~~~l~~l~~~~--~~-------~~---------------------------------~~~~~~l~~~l~~---- 254 (1049)
+.+..+++||.+++... |. .+ +..+..+..++..
T Consensus 247 d~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~ 326 (1053)
T COG5101 247 DTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEV 326 (1053)
T ss_pred chhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHHH
Confidence 56666777777765432 00 00 0011122222211
Q ss_pred ---hhhCCC-----------------C-ChHHHHHHHHHHHHHHhhhHhhh-----------------------------
Q 001584 255 ---VSSSHN-----------------L-EPNTRHQAIQIISWLAKYKYNSL----------------------------- 284 (1049)
Q Consensus 255 ---~~~~~~-----------------~-~~~~r~~a~~~l~~l~~~~~~~~----------------------------- 284 (1049)
.+++++ . +.++-..+++.|..++-.--..+
T Consensus 327 ~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn~~~ 406 (1053)
T COG5101 327 YISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQDS 406 (1053)
T ss_pred HHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcchhc
Confidence 111110 0 12234456677766542110000
Q ss_pred ----hhcCChHHHHHHHh----hhhccCCC-----CC----------CCCCCcHHHHHHHHHHHHHHHcchhchHHHHHH
Q 001584 285 ----KKHKLVIPILQVMC----PLLAESNE-----AG----------EDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEF 341 (1049)
Q Consensus 285 ----~~~~~~~~il~~l~----~~l~~~~~-----~~----------~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~ 341 (1049)
+++ .+..++..+. ..|..+++ +| |.|....++...+++-.++...-.+.-..++..
T Consensus 407 ~~pLrkh-iY~~ilsqLrlvlienMvrPEEVliVendegEivRefvketDtI~lYksmRevLvyLthL~v~Dte~~mi~K 485 (1053)
T COG5101 407 TKPLRKH-IYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHLIVDDTEKYMIGK 485 (1053)
T ss_pred ccchHHH-HHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhhhhhhhHHHHHHHH
Confidence 111 1222333332 22333321 11 112234445555666555543333333334444
Q ss_pred HHhhhcCC--ChhHHhHHHHHHHHHhhcChHHHHH-hHHHHHHHHH-----hhcCCCChhHHHHHHHHHHHhHhhhcHHH
Q 001584 342 ASVSCQNA--SPKYREAAVTAIGIISEGCAEWMKE-KLESVLHIVL-----GALRDPEQFVRGAASFALGQFAEYLQPEI 413 (1049)
Q Consensus 342 l~~~l~~~--~~~~r~~al~~l~~i~~~~~~~~~~-~l~~i~~~l~-----~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 413 (1049)
+-..+.+. +|..-..-+|++|.++....+.... ++-.++..++ +..+|....|....++.+|++-..+.. .
T Consensus 486 larq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLka-h 564 (1053)
T COG5101 486 LARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKA-H 564 (1053)
T ss_pred HHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHH-H
Confidence 44444443 5778889999999999876655433 3334444333 334576777777778888888777643 3
Q ss_pred HhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhcc--------ccccchHHHHHHHHHhhcCCCHhHHHHHHHHHH
Q 001584 414 VSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE--------EILPFLDPLMGKLLAALENSPRNLQETCMSAIG 485 (1049)
Q Consensus 414 ~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~--------~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~ 485 (1049)
..++..++..+++.+......|+..||..+-.+++.|+- +-.|++..++..+-....+-.+.-.....++.|
T Consensus 565 w~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg 644 (1053)
T COG5101 565 WSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACG 644 (1053)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHh
Confidence 567788999999999998899999999999999988862 234666666665555444433333333344444
Q ss_pred HHH
Q 001584 486 SVA 488 (1049)
Q Consensus 486 ~l~ 488 (1049)
.++
T Consensus 645 ~vI 647 (1053)
T COG5101 645 MVI 647 (1053)
T ss_pred HHH
Confidence 333
No 28
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=2.1e-15 Score=159.47 Aligned_cols=527 Identities=16% Similarity=0.136 Sum_probs=331.6
Q ss_pred cCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCC-CHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhh
Q 001584 90 EHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE-QEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCL 168 (1049)
Q Consensus 90 e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~-~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l 168 (1049)
+....+|.....+...+...... ++-..+.|..-+.+++. +...|++.+-..+.+..+.. ...+..-.++..+.+.+
T Consensus 28 d~~~~v~~~ml~a~~~~~~~~~~-~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~-~~d~~~~~~~~~~~~~~ 105 (569)
T KOG1242|consen 28 DRRIDVRGNMLEAGEAAINQHGD-QNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQ-IVDPRPISIIEILLEEL 105 (569)
T ss_pred CcchhhHHhHHHHHHHHHHhhhH-HHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhcc-ccCcchhHHHHHHHHhc
Confidence 45566776666555554443211 23345667777767653 44556666555555554433 33455566777788887
Q ss_pred CCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHHHH
Q 001584 169 QDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSI 248 (1049)
Q Consensus 169 ~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l 248 (1049)
.. +++.++.+...|+..+........ . ..+.+.+. +.+....-..+..+...+..+.......-... ..+
T Consensus 106 ~t-ps~~~q~~~~~~l~~~~~~~~~~~-~---~~~l~~l~----~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~-~~~ 175 (569)
T KOG1242|consen 106 DT-PSKSVQRAVSTCLPPLVVLSKGLS-G---EYVLELLL----ELLTSTKIAERAGAAYGLAGLVNGLGIESLKE-FGF 175 (569)
T ss_pred CC-CcHHHHHHHHHHhhhHHHHhhccC-H---HHHHHHHH----HHhccccHHHHhhhhHHHHHHHcCcHHhhhhh-hhH
Confidence 77 999999999999887765543221 1 12223232 33444444556666666665554432111000 122
Q ss_pred HHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHH
Q 001584 249 VHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMAL 328 (1049)
Q Consensus 249 ~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~ 328 (1049)
+..+.....++. ....|..+.-.......+-+.. ..+|+.++++.++.-..+... .+|.++..+.+.+..
T Consensus 176 l~~l~~ai~dk~-~~~~re~~~~a~~~~~~~Lg~~--~EPyiv~~lp~il~~~~d~~~-------~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 176 LDNLSKAIIDKK-SALNREAALLAFEAAQGNLGPP--FEPYIVPILPSILTNFGDKIN-------KVREAAVEAAKAIMR 245 (569)
T ss_pred HHHHHHHhcccc-hhhcHHHHHHHHHHHHHhcCCC--CCchHHhhHHHHHHHhhccch-------hhhHHHHHHHHHHHH
Confidence 333333333331 2222322222222222111111 224777788888776665544 789999999999998
Q ss_pred HcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhh
Q 001584 329 NLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEY 408 (1049)
Q Consensus 329 ~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 408 (1049)
.++..-++.++|.+...+....|+.+.+++..+|.+++..+..+...+++++|.+...|.|.++.||.++..++.++++.
T Consensus 246 ~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~sv 325 (569)
T KOG1242|consen 246 CLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSV 325 (569)
T ss_pred hcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 88855555555555444555599999999999999999999999999999999999999999999999999999999988
Q ss_pred hcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhcccc-ccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHH
Q 001584 409 LQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEI-LPFLDPLMGKLLAALENSPRNLQETCMSAIGSV 487 (1049)
Q Consensus 409 ~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l-~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l 487 (1049)
... +.+..++|.++.++.+++.++.. +...|..- .+-..+ .|-+.-+++.+...+...+...+..+...++.+
T Consensus 326 idN---~dI~~~ip~Lld~l~dp~~~~~e-~~~~L~~t--tFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm 399 (569)
T KOG1242|consen 326 IDN---PDIQKIIPTLLDALADPSCYTPE-CLDSLGAT--TFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNM 399 (569)
T ss_pred hcc---HHHHHHHHHHHHHhcCcccchHH-HHHhhcce--eeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHH
Confidence 753 33677899999999999755432 23332210 111112 256777888888888888888889999999999
Q ss_pred HHHh--hhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCCCchhhHH
Q 001584 488 AAAA--EQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREY 565 (1049)
Q Consensus 488 ~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~ 565 (1049)
+.-. +..+.||++.++|-++..+... .+ ..|..+..+++.+.+.+|...|....+.+.+....... ..-|..
T Consensus 400 ~~LveDp~~lapfl~~Llp~lk~~~~d~-~P--EvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~---~~~~~g 473 (569)
T KOG1242|consen 400 CKLVEDPKDLAPFLPSLLPGLKENLDDA-VP--EVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKS---LVDRSG 473 (569)
T ss_pred HHhhcCHHHHhhhHHHHhhHHHHHhcCC-Ch--hHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchh---hhhhHH
Confidence 9888 5688999999999999988655 33 56778889999999999988885555555554322111 112333
Q ss_pred HHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCchhhhccCCCCCCCcchhhcccccceeeeccchhhH
Q 001584 566 THGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEK 645 (1049)
Q Consensus 566 ~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k 645 (1049)
+ ...+++.++..-..+...+++.++........ ++. .+
T Consensus 474 ~---aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~---------~~~------------------------------~~ 511 (569)
T KOG1242|consen 474 A---AQDLSEVLAGLGVEKVEDILPEILANASSVLI---------DER------------------------------IR 511 (569)
T ss_pred H---hhhHHHHHhcccchHHHHHHHHHHHHHhhccc---------hhh------------------------------hc
Confidence 3 34444444444455677777777765542210 000 01
Q ss_pred HHHHHHHHHHHHHhhhhchhhHHHHHHHHHhhhcCCChHHHHHHHHH
Q 001584 646 AAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFA 692 (1049)
Q Consensus 646 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~ 692 (1049)
..-++.+..+-...+..+.||+.++++.+.+...+.++.+|..+.++
T Consensus 512 dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~ 558 (569)
T KOG1242|consen 512 DGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEA 558 (569)
T ss_pred cCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhh
Confidence 11122333333444667889999999999887767777666665543
No 29
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.77 E-value=5.1e-13 Score=146.28 Aligned_cols=523 Identities=14% Similarity=0.134 Sum_probs=289.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhccC-----CCHHHHHHHH
Q 001584 7 LLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAK-----LSPQLKQLVK 80 (1049)
Q Consensus 7 ~ll~~~~s~d~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~-~~~~~R~~a~~~l~~~i~~~w~~-----~~~~~~~~i~ 80 (1049)
..+...+|+|+..+|.||+.|++++++++|...|..+..+. .+-.+|..|++.||+.|.++|.. +.++....||
T Consensus 8 ~~~~~aqs~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v~IR 87 (947)
T COG5657 8 KQLDLAQSPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILPDENVLIR 87 (947)
T ss_pred HHHHhhcCCCCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccchHHH
Confidence 35677889999999999999999999999999999998875 58899999999999999999975 4455555999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcc------c
Q 001584 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF------R 154 (1049)
Q Consensus 81 ~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~------~ 154 (1049)
..++..+.+ .+....-+.+.+++.||+.++|. .||.++|.+...+++.+....++.+..+..+++...+.+ .
T Consensus 88 ~~l~~lii~-s~n~l~iq~a~avs~IA~~DfPd-eWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~l~Rsd~lf~ 165 (947)
T COG5657 88 DELFSLIIS-SSNQLQIQNALAVSRIARLDFPD-EWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRRLFRSDALFL 165 (947)
T ss_pred HHHHHHHHc-ccchHHHHHHHHHHHHHhccCcc-cchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhhhhccHHHHH
Confidence 999999986 56666668999999999999995 999999999999999888888899999998888766432 2
Q ss_pred ccHHHHHHHHHHhhCCC-CChHHHH-----------HHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHH
Q 001584 155 PHFADMQALLLKCLQDE-TSNRVRI-----------AALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDV 222 (1049)
Q Consensus 155 ~~~~~l~~~l~~~l~~~-~~~~vr~-----------~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~ 222 (1049)
...+.+.+++.+.+... +.+..+. .+++.+..+....-.. ...-+++.++..+....+.++..++..
T Consensus 166 ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qd-i~eFfEd~l~~~m~~F~klls~~~~~l 244 (947)
T COG5657 166 EIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQD-IPEFFEDNLDKFMEHFCKLLSYSNPVL 244 (947)
T ss_pred HHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 23344443333333210 1111111 2333333333332221 123456777777777666666444433
Q ss_pred HH-------------HHHHHHHHHhccCCcchhhhHHHHHHHHHHhhhC---CCCChHHHHHHHHHHHHHHhhh-Hhh--
Q 001584 223 AV-------------IAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSS---HNLEPNTRHQAIQIISWLAKYK-YNS-- 283 (1049)
Q Consensus 223 ~~-------------~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~r~~a~~~l~~l~~~~-~~~-- 283 (1049)
.. +.+..+.-+....|..+.+.+-..++..+..... +..-+.+...++.++....++. ++.
T Consensus 245 q~~~le~~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit~~~~~d~Lv~k~l~~l~~v~k~~irk~~e 324 (947)
T COG5657 245 QKDCLEDCVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTITRPYIRDYLVSKSLTVLINVIKYPIRKTAE 324 (947)
T ss_pred hhhhcccceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhcCccccchhhhhHHHHHHHhhccccHHHHH
Confidence 33 2344444444555666665555555555444332 2122333334444444443310 110
Q ss_pred -hhh--cCChHHHHHHHhhh-hccCCCCC----------------CCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHH
Q 001584 284 -LKK--HKLVIPILQVMCPL-LAESNEAG----------------EDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFAS 343 (1049)
Q Consensus 284 -~~~--~~~~~~il~~l~~~-l~~~~~~~----------------~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~ 343 (1049)
..+ .+....+++.++-. +.-.++|. .|-+..+|.++.+.++..-..+++-+.+.+...+.
T Consensus 325 ~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~eyire~s~~dye~~vr~~~~~~l~~~f~~~~~i~~~~~~~~ie 404 (947)
T COG5657 325 VLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLEYIREQSKTDYEVNVRPCIENELKDLFDVFGRIAVGHELTVIE 404 (947)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHHHHHhhccccchhhhhHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 111 11222333333221 11111111 11123456667777777777777656677788887
Q ss_pred hhhcCCCh---hHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCC----CChhHHHHHHH-HHHHhHhhhcHH--H
Q 001584 344 VSCQNASP---KYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD----PEQFVRGAASF-ALGQFAEYLQPE--I 413 (1049)
Q Consensus 344 ~~l~~~~~---~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d----~~~~vr~~a~~-~l~~l~~~~~~~--~ 413 (1049)
+....++- ..+.-++.++..+....-..+-...+-.-..+...+.+ ++.+++..... .+..-......+ .
T Consensus 405 ~~~t~P~~~d~~~~~~a~~a~~g~g~~av~~~~~~v~~~~~~~~pd~~s~~~~~~~ri~~~~i~~i~~~r~~l~~~~~~~ 484 (947)
T COG5657 405 SEATTPNILDEARQLFAAYASFGLGVEAVNRMVDFVKFLGSIIYPDLLSPNEIIHLRILRSRIAYILTFRNQLDSSELSE 484 (947)
T ss_pred HHhcCchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCccccCcccCceeEEehhccchheechhhhhhhhhhh
Confidence 77766621 22333333333222211111112222222222222222 34444333322 221111110011 0
Q ss_pred Hhhh-hhHHHHHHHhccCC--ChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCC-CHhHHHHHHHHHHHHHH
Q 001584 414 VSHY-ESVLPCILNALEDE--SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS-PRNLQETCMSAIGSVAA 489 (1049)
Q Consensus 414 ~~~~-~~ll~~l~~~l~~~--~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~-~~~v~~~~~~~l~~l~~ 489 (1049)
...+ .+.+........|. --.++.+....+....-. +....+-.+.++-.+.+.+.+. ...-+...+++++++..
T Consensus 485 ~~fl~~~~F~~yt~~~id~~~lLT~~~a~~t~~~~~n~~-~~~~~~~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~ 563 (947)
T COG5657 485 SKFLASQFFVNYTTACIDAVVLLTTREAYSTIFDDWNFS-VCSKIGLLENLILLVLSLMASPSSLEEREFLLQLISRIII 563 (947)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccc-cccccccHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Confidence 1111 11111111111111 123444444433332211 1133345556665555655553 46678999999999999
Q ss_pred HhhhhccccHHHHHHHHHHHHhc-cChhhh-hhHHHHHHHHHHHHH
Q 001584 490 AAEQAFIPYAERVLELLKIFMVL-TNDEDL-RSRARATELLGLVAE 533 (1049)
Q Consensus 490 ~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~-~~r~~a~~~l~~l~~ 533 (1049)
..++...|-..++++.+.++... ..++.. .+-...++.++.++.
T Consensus 564 ~~~~~i~pl~~~il~~L~~lv~~~~knps~p~~~h~~fe~I~al~~ 609 (947)
T COG5657 564 IDPELIAPLGSEILQLLDNLVEINAKNPSNPQFAHYTFEDIGALVF 609 (947)
T ss_pred hCHHhhhhhHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHH
Confidence 99999999888899988887753 222222 223344556665554
No 30
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=2.5e-14 Score=151.36 Aligned_cols=521 Identities=18% Similarity=0.177 Sum_probs=337.1
Q ss_pred CCHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHH
Q 001584 218 GEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVM 297 (1049)
Q Consensus 218 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l 297 (1049)
+..+++...++........+.. +...++.+..-+.+++.. .+.+|...+-+.++++.+.+. ..+...+++..+
T Consensus 29 ~~~~v~~~ml~a~~~~~~~~~~---~~v~~l~~~~~~~l~~~~-~~~~~~~~~v~~~~~a~~~~~---~d~~~~~~~~~~ 101 (569)
T KOG1242|consen 29 RRIDVRGNMLEAGEAAINQHGD---QNVLNLKPCFEQRLNSLH-NDNLRNNVVVLEGTLAFHLQI---VDPRPISIIEIL 101 (569)
T ss_pred cchhhHHhHHHHHHHHHHhhhH---HHHHHHHHHHHHHhccch-hHHHhhhhHHHHHHHHHhccc---cCcchhHHHHHH
Confidence 3444555555555544443332 222333333333333332 556677666666666644221 122334566666
Q ss_pred hhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChH-HHHHhH
Q 001584 298 CPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAE-WMKEKL 376 (1049)
Q Consensus 298 ~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~-~~~~~l 376 (1049)
+.-+..+.+ +++++...|+..+.-.....-...+.+.+.+.+...+...|..+...+..+..+..- .+.+
T Consensus 102 ~~~~~tps~-------~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~-- 172 (569)
T KOG1242|consen 102 LEELDTPSK-------SVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE-- 172 (569)
T ss_pred HHhcCCCcH-------HHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh--
Confidence 666655554 677787888877766555444455667777778888888999999999988887653 2233
Q ss_pred HHHHHHHHhhcCCCCh-hHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhcc-cc
Q 001584 377 ESVLHIVLGALRDPEQ-FVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE-EI 454 (1049)
Q Consensus 377 ~~i~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~-~l 454 (1049)
..++..+.....|.+. ..|..+..+...++..+++.+.+|+-.++|.++....|..+.||.++..+...+...++. .+
T Consensus 173 ~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV 252 (569)
T KOG1242|consen 173 FGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV 252 (569)
T ss_pred hhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh
Confidence 2577788888888554 455578888888888888888899999999999999999999999999999999887743 23
Q ss_pred ccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHh
Q 001584 455 LPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAES 534 (1049)
Q Consensus 455 ~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~ 534 (1049)
...++.++..+. ...+.-+..+++.+|.++...+....-+++.++|.+.+.+..+. ..+|..+++|+..++..
T Consensus 253 K~llpsll~~l~----~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~---~evr~a~~~~l~~~~sv 325 (569)
T KOG1242|consen 253 KLLLPSLLGSLL----EAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTK---PEVRKAGIETLLKFGSV 325 (569)
T ss_pred hHhhhhhHHHHH----HHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCC---HHHHHHHHHHHHHHHHh
Confidence 334444444443 34778899999999999999999999999999999999997653 35788889999999877
Q ss_pred hchhccccchHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcc--cCccCchhhhhHHHHhhccCCCCCccCCCCCchh
Q 001584 535 VGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLE--DGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDE 612 (1049)
Q Consensus 535 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~--~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~ 612 (1049)
+.. +.+..+++.+++++.++...+.++. ..+....- .--.|-+..++|.|-+.+..
T Consensus 326 idN----~dI~~~ip~Lld~l~dp~~~~~e~~----~~L~~ttFV~~V~~psLalmvpiL~R~l~e-------------- 383 (569)
T KOG1242|consen 326 IDN----PDIQKIIPTLLDALADPSCYTPECL----DSLGATTFVAEVDAPSLALMVPILKRGLAE-------------- 383 (569)
T ss_pred hcc----HHHHHHHHHHHHHhcCcccchHHHH----HhhcceeeeeeecchhHHHHHHHHHHHHhh--------------
Confidence 753 3355677777778887654444433 22221110 01124455566666654431
Q ss_pred hhccCCCCCCCcchhhcccccceeeeccchhhHHHHHHHHHHHHHHh--hhhchhhHHHHHHHHHhhhcCCChHHHHHHH
Q 001584 613 NINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHT--KSSYAPFLEESLKILVRHASYFHEDVRYQAV 690 (1049)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~ 690 (1049)
|+. ..|..+...++.++.-. +..+.||++.+++.+-....+..+++|..+.
T Consensus 384 -------------------------Rst--~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaa 436 (569)
T KOG1242|consen 384 -------------------------RST--SIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAA 436 (569)
T ss_pred -------------------------ccc--hhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHH
Confidence 111 13456667777777766 6789999999999998887777899999999
Q ss_pred HHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Q 001584 691 FALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLL 770 (1049)
Q Consensus 691 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~l~~ 770 (1049)
.+|+.+++..+.. ..+...|.+.+.+..+....-.......+.+++...|-......+..+......
T Consensus 437 rAL~~l~e~~g~~-------------~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~ 503 (569)
T KOG1242|consen 437 RALGALLERLGEV-------------SFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEILANASS 503 (569)
T ss_pred HHHHHHHHHHHhh-------------cccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHHHHHhh
Confidence 9999998876521 113444555554443322222345667777777766644333344333322221
Q ss_pred HHHhhhhhcCCCCCCCCCccccchhhHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhccCCCcccchhhh
Q 001584 771 LLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVV 846 (1049)
Q Consensus 771 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~ 846 (1049)
.+- ++.+.+....++..+-...|..+.+|+..+++.+.+.+.+.+. ..+..++
T Consensus 504 ~~~----------------------~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de-~~~~~~~ 556 (569)
T KOG1242|consen 504 VLI----------------------DERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDE-KGRDTAL 556 (569)
T ss_pred ccc----------------------hhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCC-ccccchh
Confidence 111 1122223444445555556778889999999999998875543 3344443
No 31
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=4.8e-13 Score=138.05 Aligned_cols=382 Identities=14% Similarity=0.138 Sum_probs=280.7
Q ss_pred cHHHHHHHHHHHHHHHcc----hhchHHHHH-HHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcC
Q 001584 314 APDRAAAEVIDTMALNLA----KHVFPPVFE-FASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR 388 (1049)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~----~~~~~~ll~-~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~ 388 (1049)
+-|++|+.-+..+.+.+- .+-...++. .+.++..+++...|.+++.+++..+-+.+....+++..+++.++.+++
T Consensus 15 ekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~ 94 (675)
T KOG0212|consen 15 EKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFS 94 (675)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhcc
Confidence 346677666666665443 122344444 445566777777888999999998877665555689999999999999
Q ss_pred CCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhc-ccc-ccchHHHHHHHH
Q 001584 389 DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG-EEI-LPFLDPLMGKLL 466 (1049)
Q Consensus 389 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~-~~l-~~~~~~ll~~l~ 466 (1049)
|++.+||.-||..+..++.....++..+++.++..+.+...|++..||. +...+..+++... +.- .-.++.+++.+.
T Consensus 95 D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~~tFsL~~~ipLL~ 173 (675)
T KOG0212|consen 95 DQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESASTFSLPEFIPLLR 173 (675)
T ss_pred CccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccccccccCHHHHHHHHH
Confidence 9999999999999999999988888899999999999999999888875 5567777777652 222 446788888888
Q ss_pred HhhcCCCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHH
Q 001584 467 AALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPP 546 (1049)
Q Consensus 467 ~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~ 546 (1049)
.-+...++..|...++-+..+-...+-+|..|.+.+++.+.+.+...++ .+|..+-.+++.+...+..+.-.-..++
T Consensus 174 eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~---eVr~~~~t~l~~fL~eI~s~P~s~d~~~ 250 (675)
T KOG0212|consen 174 ERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSD---EVRTLTDTLLSEFLAEIRSSPSSMDYDD 250 (675)
T ss_pred HHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcH---HHHHHHHHHHHHHHHHHhcCccccCccc
Confidence 8888888999999999888887777778899999999999999865443 3454455566666665543222214456
Q ss_pred HHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCchhhhccCCCCCCCcch
Q 001584 547 FVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEA 626 (1049)
Q Consensus 547 i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (1049)
.++.+...++++++.++.-++..+..++...|.++.+|++.++..++..+...+..
T Consensus 251 ~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~------------------------ 306 (675)
T KOG0212|consen 251 MINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEM------------------------ 306 (675)
T ss_pred chhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccc------------------------
Confidence 77778888888999999999999999999999999999999999999877533210
Q ss_pred hhcccccceeeeccchhhHHHHHHHHHHHHHHh-----hhhchhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHH
Q 001584 627 HCERSVRNISVRTGVLDEKAAATQALGLFALHT-----KSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAH 701 (1049)
Q Consensus 627 ~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~ 701 (1049)
+ .|..+...-+.+..-. ++. --+..+++.+.+.+.+..++.|.++.+-+..+...
T Consensus 307 ---------~-------i~~~a~~~n~~l~~l~s~~~~~~~--id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~-- 366 (675)
T KOG0212|consen 307 ---------S-------IKEYAQMVNGLLLKLVSSERLKEE--IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHK-- 366 (675)
T ss_pred ---------c-------HHHHHHHHHHHHHHHHhhhhhccc--cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhh--
Confidence 0 1222222211111111 222 12567888888888888888898888877777554
Q ss_pred HhhccCCCChHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHh
Q 001584 702 AIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDY 752 (1049)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~i~~~ 752 (1049)
.+..+....+.+++.+++.+.+. +.+++...+..++.++..-
T Consensus 367 --------~p~ql~~h~~~if~tLL~tLsd~-sd~vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 367 --------APGQLLVHNDSIFLTLLKTLSDR-SDEVVLLALSLLASICSSS 408 (675)
T ss_pred --------CcchhhhhccHHHHHHHHhhcCc-hhHHHHHHHHHHHHHhcCc
Confidence 23445666778888888887554 5677778888888887643
No 32
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=2.2e-10 Score=124.25 Aligned_cols=669 Identities=11% Similarity=0.132 Sum_probs=369.0
Q ss_pred HhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhc--C----ChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHH
Q 001584 254 EVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKH--K----LVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMA 327 (1049)
Q Consensus 254 ~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~--~----~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~ 327 (1049)
++..++..+..+|..|.-.+.+.++......... + --..+...++.+|..... .......+++..++
T Consensus 44 ~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~~-------~iQ~qlseal~~Ig 116 (960)
T KOG1992|consen 44 NLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSPF-------NIQKQLSEALSLIG 116 (960)
T ss_pred HHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHHHh
Confidence 3445566688999998877777765322111111 1 112345556666655433 44555566666666
Q ss_pred HHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcC---------hHHHHHhHHHHHHHHHhhcC---------C
Q 001584 328 LNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC---------AEWMKEKLESVLHIVLGALR---------D 389 (1049)
Q Consensus 328 ~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~---------~~~~~~~l~~i~~~l~~~l~---------d 389 (1049)
+.--.+-||.++|.+...+++.|...-.+.+..-..+.+.. ...++-.++.....+...+. +
T Consensus 117 ~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~ 196 (960)
T KOG1992|consen 117 KRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHA 196 (960)
T ss_pred ccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcc
Confidence 54446789999999999999888766666555444454432 12233334322222222221 1
Q ss_pred CChh---HHHHHHHHHHHh-----HhhhcHHHHhhhhhHHHHHHHhccCCC-------------hHHHHHHHHHHHHHHH
Q 001584 390 PEQF---VRGAASFALGQF-----AEYLQPEIVSHYESVLPCILNALEDES-------------DEVKEKSYYALAAFCE 448 (1049)
Q Consensus 390 ~~~~---vr~~a~~~l~~l-----~~~~~~~~~~~~~~ll~~l~~~l~~~~-------------~~v~~~a~~~l~~l~~ 448 (1049)
.+.. +-......+..+ +..+++-+.++++..|+...+.++..+ ..+|...|..+.-...
T Consensus 197 ~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~ 276 (960)
T KOG1992|consen 197 NDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYAT 276 (960)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHH
Confidence 1111 001111111111 233455567788899999998887332 2467788999988899
Q ss_pred hhccccccchHHHHHHHHHhhcCCC-----HhHHHHHHHHHHHHHHHhhhhccccHHHHH---HHHHHHHhccChhhhhh
Q 001584 449 DMGEEILPFLDPLMGKLLAALENSP-----RNLQETCMSAIGSVAAAAEQAFIPYAERVL---ELLKIFMVLTNDEDLRS 520 (1049)
Q Consensus 449 ~~~~~l~~~~~~ll~~l~~~l~~~~-----~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~---~~l~~~l~~~~~~~~~~ 520 (1049)
.+++.+.|++++++...+.++.+.. ..+...|++.++++++.- ++..++ ..+.++.+.---+...+
T Consensus 277 kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~------~y~~~F~~~~vl~~i~e~VvlpN~~l 350 (960)
T KOG1992|consen 277 KYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRP------HYAELFEGENVLAQICEKVVLPNLIL 350 (960)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhh------hhHhhhcchHHHHHHHHhhccccccc
Confidence 9999999999999999999887633 346778888888887642 222211 01111111100111122
Q ss_pred HHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCC
Q 001584 521 RARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDD 600 (1049)
Q Consensus 521 r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~ 600 (1049)
|.. ..+.|+..-.+.+..-++. ++...-|+.++..++.+++.+.....+.+...+..++.....+|
T Consensus 351 R~e------------DeElFED~pleYiRRDlEG--sDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nP 416 (960)
T KOG1992|consen 351 REE------------DEELFEDNPLEYIRRDLEG--SDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNP 416 (960)
T ss_pred chh------------hHHHhccCHHHHHHHhccc--CCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCC
Confidence 211 1344555444455443332 33344678899999999999987888888888888887665443
Q ss_pred CCccCCCCCchhhhccCCCCCCCcchhhcccccceeeeccchhhHHHHHHHHHHHHHHhhh---------hchhhHHHHH
Q 001584 601 GSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKS---------SYAPFLEESL 671 (1049)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~~---------~~~~~~~~~~ 671 (1049)
.. +| ..|..|+..+..++..... .+.+-.+-+.
T Consensus 417 S~--------nW------------------------------k~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~ 458 (960)
T KOG1992|consen 417 SG--------NW------------------------------KKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFA 458 (960)
T ss_pred Cc--------cc------------------------------cccchhhhhhHHHHhhcchhhcceeeccccccHHHHHH
Confidence 11 11 1355566666666554211 1222222223
Q ss_pred HHHHhhhcC----CChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHH
Q 001584 672 KILVRHASY----FHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVE 747 (1049)
Q Consensus 672 ~~l~~~~~~----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~ 747 (1049)
..+.+-+.+ .++-+|..+.+-+... .....++.+-..+|.+...+..+ ..-+...+..++..
T Consensus 459 ~~ilp~L~s~~vn~~pilka~aIKy~~~F-------------R~ql~~~~lm~~~p~li~~L~a~-s~vvhsYAA~aiEk 524 (960)
T KOG1992|consen 459 NQILPDLLSPNVNEFPILKADAIKYIYTF-------------RNQLGKEHLMALLPRLIRFLEAE-SRVVHSYAAIAIEK 524 (960)
T ss_pred HHhhHHhccCccccccchhhcccceeeee-------------cccCChHHHHHHHHHHHHhccCc-chHHHHHHHHHHHh
Confidence 333332221 2222333333211111 11112344445566666655443 33344455555655
Q ss_pred HHHHhCC--------cccHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhHHHHHHHHhHHHHHHHHhCCChH
Q 001584 748 IINDYGY--------MAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFA 819 (1049)
Q Consensus 748 ~i~~~g~--------~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 819 (1049)
++...+. ..+.++...++..+++.+.... ..++++++.++.+.++..-...-+.+.
T Consensus 525 il~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~----------------~~EneylmKaImRii~i~~~~i~p~~~ 588 (960)
T KOG1992|consen 525 LLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPG----------------KAENEYLMKAIMRIISILQSAIIPHAP 588 (960)
T ss_pred ccccccCccccccchhhcchHHHHHHHHHHHhccCCc----------------ccccHHHHHHHHHHHHhCHHhhhhhhh
Confidence 5543332 2334455555554443333211 245667777776666543333222233
Q ss_pred HHHHHHHHHHHHhhccCCCcccchhhhHhHHHHHhhcCCc----hhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHh
Q 001584 820 PIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSP----IAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCK 895 (1049)
Q Consensus 820 ~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~----~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~lg~l~~ 895 (1049)
+.+.++...+....++++++.....-+..+|.+++..+.. +..+...++|.+...++.+-.+....++..++.+++
T Consensus 589 ~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve 668 (960)
T KOG1992|consen 589 ELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVE 668 (960)
T ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555666666666778888888888776543 345778889988888887777888889999999999
Q ss_pred hcCcchhhHHHHHHHhh-hhhhCCCCCChhHHhhHHHHHHHHHHhCCCCCC----hhhHHHHHHhhCCCCCcHHhhHHHH
Q 001584 896 NGGESALKYYGDILRGL-YPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIP----LNQVLPVLLKVLPLKEDFEESMAVY 970 (1049)
Q Consensus 896 ~~~~~~~~~~~~~l~~L-~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~----~~~~l~~~l~~lp~~~d~~e~~~~~ 970 (1049)
+......+.+..+++.| .+.+..+..+-. ..+..+..++...++.++ ++.++..|-+.++.+.-+.. .|
T Consensus 669 ~~~~~ip~~~~~l~~~lLsp~lW~r~gNip---alvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~Dh~---GF 742 (960)
T KOG1992|consen 669 HSSGTIPDSYSPLFPPLLSPNLWKRSGNIP---ALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKANDHH---GF 742 (960)
T ss_pred hcCCCCchhHHHHHHHhcCHHHHhhcCCcH---HHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccchh---HH
Confidence 87664444444444432 222221111111 123344445555665554 56788888888876654444 34
Q ss_pred HHHHHHHhhCCh-hhcchhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhh
Q 001584 971 NCISTLVLSSNP-QILSLVPELVNLFAEVVVSPEESSEVKSQVGMAFSHLISLYG 1024 (1049)
Q Consensus 971 ~~l~~l~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 1024 (1049)
..+-.++...++ .+.+|+.+|...+.+.+..+ ..++....+.-++..+.-.++
T Consensus 743 ~LLn~i~~~~~~~~~~py~k~i~~llf~Rlqns-kT~kf~k~~~vF~~~~~ik~~ 796 (960)
T KOG1992|consen 743 YLLNTIIESIPPNELAPYMKQIFGLLFQRLQNS-KTEKFVKSFIVFFSLFTIKKG 796 (960)
T ss_pred HHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHHhh
Confidence 444444444443 35678989988888877643 455555555555555444443
No 33
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=5.6e-09 Score=118.88 Aligned_cols=783 Identities=14% Similarity=0.127 Sum_probs=412.0
Q ss_pred HHHHHHhhhhhhh-cccccHHHHHHHHHHhhC-CCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhh
Q 001584 139 LILFSSLTETIGQ-TFRPHFADMQALLLKCLQ-DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLA 216 (1049)
Q Consensus 139 l~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~-~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~ 216 (1049)
.++|..++.+.|. .+...+.++...+...++ ++.+..|+..++.||..++...+ -..|. ...-...+.. +..+..
T Consensus 72 ~~LL~li~~~VPs~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd-~~aW~-~~~t~~~~~~-il~~~~ 148 (1176)
T KOG1248|consen 72 AYLLVLILKYVPSPVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQD-ASAWS-YSSTKTELFG-ILAFAA 148 (1176)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcc-hhhhc-cccHHHHHHH-HHHHHh
Confidence 6788888888775 556677777777777776 22788899999999999987642 12232 1111111222 222234
Q ss_pred cCCHHHHHHHHHHHHHHhccCCcchh---hhHHHHHHHHHHhhhCCCC--ChHHHHHHHHHHHHHHhhhHhhhhhcCChH
Q 001584 217 SGEEDVAVIAFEIFDELIESPAPLLG---DSVKSIVHFSLEVSSSHNL--EPNTRHQAIQIISWLAKYKYNSLKKHKLVI 291 (1049)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~~---~~~~~l~~~l~~~~~~~~~--~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~ 291 (1049)
+..+.++..+.+.+..++...+-... +....+..+++..++..-. +...-...+.++..+.... +...+.
T Consensus 149 h~~pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~-----p~~li~ 223 (1176)
T KOG1248|consen 149 HKKPKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTF-----PRPLIK 223 (1176)
T ss_pred cCchHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccC-----CHHHHH
Confidence 56788999999999988865433222 2223344455544433211 1111222334444444322 223455
Q ss_pred HHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcch----hchHHHHHHHHhhhcCC-ChhHHhHHHHHHHHHhh
Q 001584 292 PILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK----HVFPPVFEFASVSCQNA-SPKYREAAVTAIGIISE 366 (1049)
Q Consensus 292 ~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~----~~~~~ll~~l~~~l~~~-~~~~r~~al~~l~~i~~ 366 (1049)
++-..++..+...+. .+...+.+++..+...-+. .....++..+.++--+. |...- +.++..+.+
T Consensus 224 sl~e~lL~i~~~s~v-------~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t---~~W~~v~~~ 293 (1176)
T KOG1248|consen 224 SLCEVLLNITTESPV-------LVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLT---VAWLKVLNE 293 (1176)
T ss_pred HHHHHHHhhcccchH-------HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHH---HHHHHHHHH
Confidence 566667766665543 4566677788777765543 22233444444332222 11111 112222222
Q ss_pred -------cChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHH-HHHhccCCChHHHHH
Q 001584 367 -------GCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPC-ILNALEDESDEVKEK 438 (1049)
Q Consensus 367 -------~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~-l~~~l~~~~~~v~~~ 438 (1049)
.-.+....+++.+++.++.++..+++.+-.++..++..+.+.... +.+.+... +-..+.-+...+-..
T Consensus 294 ~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~----~~~~~c~~~~~~~l~~kf~~~~~~ 369 (1176)
T KOG1248|consen 294 AHDILATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVT----VIDALCSKQLHSLLDYKFHAVWRF 369 (1176)
T ss_pred HHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc----ccHHHHHHHHHHHHcchHHHHHHH
Confidence 223444566888999999988889999988999988887765432 22222222 333444455556677
Q ss_pred HHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhc-cccH-------------HHHHH
Q 001584 439 SYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAF-IPYA-------------ERVLE 504 (1049)
Q Consensus 439 a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~-~~~~-------------~~~~~ 504 (1049)
++..+..+++.+++...|++...++.+...-.+++..-+.+.=.|||+...++|... ...+ .=++|
T Consensus 370 ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~~~s~~~~RsWLLP 449 (1176)
T KOG1248|consen 370 ILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLHAESLSFTRSWLLP 449 (1176)
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhccccccccchhHhHH
Confidence 889999999999988889999999888877666666666688889998888887421 1100 01344
Q ss_pred HHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCC-C-c-hhhHHHHHHHHHHHHH--ccc
Q 001584 505 LLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLE-F-S-ELREYTHGFFSNIAGV--LED 579 (1049)
Q Consensus 505 ~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~-~-~-~~r~~~~~~l~~l~~~--~~~ 579 (1049)
+|+..+...+ ++.+ .+.|.|++..+.....+ +... . . .++....+.|+-+-.- .|.
T Consensus 450 vLR~~i~~A~-------------La~F-----~~~ivpla~sl~~K~~~-l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~ 510 (1176)
T KOG1248|consen 450 VLRDYIIGAS-------------LAFF-----TEYIVPLAMSLQLKAKK-LKEAGSQVSLYDTLVDQLWSLLPGFCNYPV 510 (1176)
T ss_pred HHHHhhccCc-------------HHHH-----HHHHHHHHHHHHHHHHh-hhhccCcHHHHHHHHHHHHHhChhhhCCCc
Confidence 4444332211 0000 01223333232222211 1111 1 1 1222222333322211 123
Q ss_pred CccCchhhhhHHHHhhccCCCCCccCCCCCchhhhccCCCCCCCcchhhcccccceeeeccchhhHHHHHHHHHHHHHHh
Q 001584 580 GFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHT 659 (1049)
Q Consensus 580 ~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~ 659 (1049)
|...-+..+.|.+...+...+ +.+...|.+|..++...
T Consensus 511 Dl~~sF~~la~~l~~al~~~~------------------------------------------elr~~Ic~sL~~Lv~~n 548 (1176)
T KOG1248|consen 511 DLAESFTDLAPILGAALLKRP------------------------------------------ELRETICNSLRMLVEQN 548 (1176)
T ss_pred cHHHHHHHHHHHHHHHHhcch------------------------------------------HhHHHHHHHHHHHHHcC
Confidence 333333444444444443211 13555666666655542
Q ss_pred ---------hhhchhhHHHHHHHHHhhhcCCCh------HHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHH
Q 001584 660 ---------KSSYAPFLEESLKILVRHASYFHE------DVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNI 724 (1049)
Q Consensus 660 ---------~~~~~~~~~~~~~~l~~~~~~~~~------~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1049)
...+..|....++.+......... ..|......+.. -+ + ...+..+. ..+...
T Consensus 549 ~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~---~~---~---~~t~~dv~---~~l~~s 616 (1176)
T KOG1248|consen 549 KPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRV---DY---F---TVTPTDVV---GSLKDS 616 (1176)
T ss_pred CCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHH---HH---h---hcccHHHH---HHHHHH
Confidence 112333444444444443222111 112222221110 00 0 00111111 111111
Q ss_pred HHHHhhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhHHHHHHHH
Q 001584 725 FIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVS 804 (1049)
Q Consensus 725 l~~~l~~~~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1049)
+.... ...+..+.....-.+-+++...++......+..++ .+..-..++ ....+..-..
T Consensus 617 ~~e~a-s~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~-------------------~~~~vQkK~y 675 (1176)
T KOG1248|consen 617 AGELA-SDLDESVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENS-------------------SSTKVQKKAY 675 (1176)
T ss_pred HHhHh-ccchhhhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhcc-------------------ccHHHHHHHH
Confidence 11111 11111111111112222222223222222333332 111111111 1122333455
Q ss_pred hHHHHHHHH-hCCCh-HHHHHHHHHHHHHhhccCCCcccchhhhHhHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHh
Q 001584 805 DLLPAFAKS-MGPHF-APIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMN 882 (1049)
Q Consensus 805 ~~l~~l~~~-~~~~~-~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v 882 (1049)
++|..+... .|..+ ...+..++..+...+++... ..+...+.++..+++.++.....+++..+|.++-.+.+.+...
T Consensus 676 rlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~-~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~a 754 (1176)
T KOG1248|consen 676 RLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSS-PAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKA 754 (1176)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHH
Confidence 666666655 11222 24566677777777776655 3588999999999999886667788888998888788888999
Q ss_pred HHHHHHHHHHHH--hhcCc----chhhHHHHHHHhhhhhhCCCCCChhHHhhHHHHHHHHHHhCCCCCC---hhhHHHHH
Q 001584 883 RRNAAFCVGELC--KNGGE----SALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIP---LNQVLPVL 953 (1049)
Q Consensus 883 r~~a~~~lg~l~--~~~~~----~~~~~~~~~l~~L~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~---~~~~l~~~ 953 (1049)
|++|..||-.+. ...-+ ....-++.++..+..-+.........++ +-++..++....+.++ +++++..+
T Consensus 755 R~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~--Ivai~~il~e~~~~ld~~~l~~li~~V 832 (1176)
T KOG1248|consen 755 RRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASD--IVAITHILQEFKNILDDETLEKLISMV 832 (1176)
T ss_pred HhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHH--HHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 999998888777 32211 1122344444444433322211112222 5666677665544443 66777777
Q ss_pred HhhCCCCCcHHhhHHHHHHHHHHHhhCCh-hhcchhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 001584 954 LKVLPLKEDFEESMAVYNCISTLVLSSNP-QILSLVPELVNLFAEVVVSPEESSEVKSQVGMAFSHLISLYGQQMQPLLS 1032 (1049)
Q Consensus 954 l~~lp~~~d~~e~~~~~~~l~~l~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 1032 (1049)
...+.-. ..+.+..+..++..++..-+. .+.++++.++..+..+..+ -.-..+.++..++..+...||. +.+-+
T Consensus 833 ~~~L~s~-sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d--~k~~~r~Kvr~LlekLirkfg~--~eLe~ 907 (1176)
T KOG1248|consen 833 CLYLASN-SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHD--HKIKVRKKVRLLLEKLIRKFGA--EELES 907 (1176)
T ss_pred HHHHhcC-CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHhCH--HHHHh
Confidence 7666533 346777888888888877664 4568999999988886543 4567888999999999988874 33333
Q ss_pred cCCHHHHHHHHhh
Q 001584 1033 NLSPAHATALAAF 1045 (1049)
Q Consensus 1033 ~l~~~~~~~l~~~ 1045 (1049)
-+|.+..+.|+++
T Consensus 908 ~~pee~~klL~nI 920 (1176)
T KOG1248|consen 908 FLPEEDMKLLTNI 920 (1176)
T ss_pred hCHHHHHHHHHHH
Confidence 4457777777654
No 34
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=3.3e-13 Score=139.30 Aligned_cols=410 Identities=15% Similarity=0.161 Sum_probs=286.8
Q ss_pred HHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhh
Q 001584 164 LLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGD 243 (1049)
Q Consensus 164 l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 243 (1049)
+.++++| .--+-|++|..-+.+++.-.-.+.+...++..+..+.. ....+.+..-+++++-.+...+-..+.--.+
T Consensus 5 i~r~ltd-KlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~---d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~ 80 (675)
T KOG0212|consen 5 IARGLTD-KLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAG---DYAYSPHANMRKGGLIGLAAVAIALGIKDAG 80 (675)
T ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH---HhccCcccccccchHHHHHHHHHHhccccHH
Confidence 4566777 66777888877776666533222233334444443333 3333333333334443333322111111122
Q ss_pred hHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHH
Q 001584 244 SVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVI 323 (1049)
Q Consensus 244 ~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l 323 (1049)
++..+++..+..+++. +..+|..|++.+..+++.....+. .+.+.++.++..+..+.+. + .+.+++.+
T Consensus 81 Y~~~iv~Pv~~cf~D~--d~~vRyyACEsLYNiaKv~k~~v~--~~Fn~iFdvL~klsaDsd~-------~-V~~~aeLL 148 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQ--DSQVRYYACESLYNIAKVAKGEVL--VYFNEIFDVLCKLSADSDQ-------N-VRGGAELL 148 (675)
T ss_pred HHHHhhHHHHHhccCc--cceeeeHhHHHHHHHHHHhccCcc--cchHHHHHHHHHHhcCCcc-------c-cccHHHHH
Confidence 5666666666667655 789999999999999875433222 2566677777777666554 3 34466778
Q ss_pred HHHHHHcc--h---hchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHH
Q 001584 324 DTMALNLA--K---HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAA 398 (1049)
Q Consensus 324 ~~l~~~~~--~---~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a 398 (1049)
+++.+... + --++.++|.+.+.+...++..|..-+.++..+-...+-.+-.+++.+++.+++.|.|+++.||..+
T Consensus 149 dRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~ 228 (675)
T KOG0212|consen 149 DRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLT 228 (675)
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHH
Confidence 88777655 1 225889999999998889999999999999998888888889999999999999999999999999
Q ss_pred HHHHHHhHhhhcHHHHh-hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHh-H
Q 001584 399 SFALGQFAEYLQPEIVS-HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRN-L 476 (1049)
Q Consensus 399 ~~~l~~l~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~-v 476 (1049)
-.+++.+...+..+-.. .+++.++.++..++++++.+|..|...+..|+.-.+..+.+|+..++..+++++.+...+ +
T Consensus 229 ~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i 308 (675)
T KOG0212|consen 229 DTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSI 308 (675)
T ss_pred HHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccH
Confidence 99999988776532222 467899999999999999999999999999999999999999999999999999887764 6
Q ss_pred HHHHHHHHHHHHHHhhhhcc---ccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHh
Q 001584 477 QETCMSAIGSVAAAAEQAFI---PYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAIS 553 (1049)
Q Consensus 477 ~~~~~~~l~~l~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 553 (1049)
+..+...-+.+...++.... --+..++..+.+.+... ....|..+++.+..+-...+. .+..+.+++...+++
T Consensus 309 ~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~---~~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~ 384 (675)
T KOG0212|consen 309 KEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDD---REETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTLLK 384 (675)
T ss_pred HHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcc---hHHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHHHH
Confidence 66555555444444432222 23457888888877543 234566778888888777754 456677889999999
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhc
Q 001584 554 GFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSC 596 (1049)
Q Consensus 554 ~l~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~ 596 (1049)
.+.+.+.++-..++..++.+|..-.. +.+.+++..|++..
T Consensus 385 tLsd~sd~vvl~~L~lla~i~~s~~~---~~~~~fl~sLL~~f 424 (675)
T KOG0212|consen 385 TLSDRSDEVVLLALSLLASICSSSNS---PNLRKFLLSLLEMF 424 (675)
T ss_pred hhcCchhHHHHHHHHHHHHHhcCccc---ccHHHHHHHHHHHH
Confidence 99998888988888888888875432 23344444444433
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.63 E-value=1.5e-12 Score=151.24 Aligned_cols=507 Identities=16% Similarity=0.186 Sum_probs=336.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhc-C--CC-cHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhccCCCHHHHHHH
Q 001584 4 SLELLLIQFLMPDNDARRQAEDQIKRLAK-D--PQ-VVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLV 79 (1049)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~a~~~L~~~~~-~--p~-~~~~l~~il~~~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i 79 (1049)
++..++.... .+...++++-..+-.+.. . .+ .....++.+. +++...|+++-..+.... .-+++..-.+
T Consensus 8 el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~-----~~~~~~~~l~ 80 (526)
T PF01602_consen 8 ELAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLIS-SKDLELKRLGYLYLSLYL-----HEDPELLILI 80 (526)
T ss_dssp HHHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCS-SSSHHHHHHHHHHHHHHT-----TTSHHHHHHH
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhC-CCCHHHHHHHHHHHHHHh-----hcchhHHHHH
Confidence 3444444444 477788888888755432 2 22 3334444333 778999999988887764 3345556667
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHH
Q 001584 80 KQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFAD 159 (1049)
Q Consensus 80 ~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~ 159 (1049)
.+.+.+-+.+ +++.+|-.+..+++.+...+ ..+.+.+.+.+++.++++.+|..|+.++..+....++.+...
T Consensus 81 ~n~l~kdl~~-~n~~~~~lAL~~l~~i~~~~----~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~--- 152 (526)
T PF01602_consen 81 INSLQKDLNS-PNPYIRGLALRTLSNIRTPE----MAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE--- 152 (526)
T ss_dssp HHHHHHHHCS-SSHHHHHHHHHHHHHH-SHH----HHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG---
T ss_pred HHHHHHhhcC-CCHHHHHHHHhhhhhhcccc----hhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH---
Confidence 7777777775 88999999999999888543 567899999999999999999999999999998877654332
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCc
Q 001584 160 MQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP 239 (1049)
Q Consensus 160 l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 239 (1049)
+.+.+.+.+.| +++.|+.+|+.++..+ ... + ..+..+++.+...+.+.+...++-....+++++..+....+.
T Consensus 153 ~~~~l~~lL~d-~~~~V~~~a~~~l~~i-~~~---~--~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~ 225 (526)
T PF01602_consen 153 LIPKLKQLLSD-KDPSVVSAALSLLSEI-KCN---D--DSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE 225 (526)
T ss_dssp HHHHHHHHTTH-SSHHHHHHHHHHHHHH-HCT---H--HHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH
T ss_pred HHHHHhhhccC-CcchhHHHHHHHHHHH-ccC---c--chhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChh
Confidence 67888888888 8899999999999888 221 1 112266777888777777778888888888888876655444
Q ss_pred chhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHH
Q 001584 240 LLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAA 319 (1049)
Q Consensus 240 ~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a 319 (1049)
.... ..+++.+...+.+. ++.+...++.++..+....+ .+..+++.+...+...+. +.+..+
T Consensus 226 ~~~~--~~~i~~l~~~l~s~--~~~V~~e~~~~i~~l~~~~~-------~~~~~~~~L~~lL~s~~~-------nvr~~~ 287 (526)
T PF01602_consen 226 DADK--NRIIEPLLNLLQSS--SPSVVYEAIRLIIKLSPSPE-------LLQKAINPLIKLLSSSDP-------NVRYIA 287 (526)
T ss_dssp HHHH--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHSSSHH-------HHHHHHHHHHHHHTSSSH-------HHHHHH
T ss_pred hhhH--HHHHHHHHHHhhcc--ccHHHHHHHHHHHHhhcchH-------HHHhhHHHHHHHhhcccc-------hhehhH
Confidence 3311 23444444444333 56677777777665543221 334567777777774433 678888
Q ss_pred HHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCC-CChhHHHHH
Q 001584 320 AEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD-PEQFVRGAA 398 (1049)
Q Consensus 320 ~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a 398 (1049)
...+..++...+..+. .....+.....+++...|..++..+..++.. .+...+++.+...+.+ +++.+|..+
T Consensus 288 L~~L~~l~~~~~~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~------~n~~~Il~eL~~~l~~~~d~~~~~~~ 360 (526)
T PF01602_consen 288 LDSLSQLAQSNPPAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANE------SNVKEILDELLKYLSELSDPDFRREL 360 (526)
T ss_dssp HHHHHHHCCHCHHHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--H------HHHHHHHHHHHHHHHHC--HHHHHHH
T ss_pred HHHHHHhhcccchhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccc------cchhhHHHHHHHHHHhccchhhhhhH
Confidence 8888887766543333 1111222223478888999999999888863 4566788888888854 477899999
Q ss_pred HHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcC-CCHhHH
Q 001584 399 SFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN-SPRNLQ 477 (1049)
Q Consensus 399 ~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~-~~~~v~ 477 (1049)
+.+++.++....+. .+..++.+++.+......+...+...+..++...++. ...++..+...+.+ .++.++
T Consensus 361 i~~I~~la~~~~~~----~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~----~~~~l~~L~~~l~~~~~~~~~ 432 (526)
T PF01602_consen 361 IKAIGDLAEKFPPD----AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL----REKILKKLIELLEDISSPEAL 432 (526)
T ss_dssp HHHHHHHHHHHGSS----HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT----HHHHHHHHHHHHTSSSSHHHH
T ss_pred HHHHHHHHhccCch----HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhh----hHHHHHHHHHHHHHhhHHHHH
Confidence 99999999887543 3345667777777666777888888888888775432 34456667777665 567789
Q ss_pred HHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccC-
Q 001584 478 ETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFG- 556 (1049)
Q Consensus 478 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~- 556 (1049)
..+++.+|..+...++ ......++..+.+.... +...+|...+.++..+....+.+. ..+.+++.+.+...
T Consensus 433 ~~~~wilGEy~~~~~~--~~~~~~~~~~l~~~~~~---~~~~vk~~ilt~~~Kl~~~~~~~~---~~~~i~~~~~~~~~~ 504 (526)
T PF01602_consen 433 AAAIWILGEYGELIEN--TESAPDILRSLIENFIE---ESPEVKLQILTALAKLFKRNPENE---VQNEILQFLLSLATE 504 (526)
T ss_dssp HHHHHHHHHHCHHHTT--TTHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHHHHHHSCSTT---HHHHHHHHHHCHHHH
T ss_pred HHHHhhhcccCCcccc--cccHHHHHHHHHHhhcc---ccHHHHHHHHHHHHHHHhhCCchh---hHHHHHHHHHHHhcc
Confidence 9999999987776654 11344445555444432 233466666777777665443211 12355565555544
Q ss_pred -CCCchhhHHHHHHHHHH
Q 001584 557 -LEFSELREYTHGFFSNI 573 (1049)
Q Consensus 557 -~~~~~~r~~~~~~l~~l 573 (1049)
+.+.++|+.+...+.-+
T Consensus 505 ~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 505 DSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp S-SSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 66899999998877644
No 36
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=8.9e-09 Score=117.31 Aligned_cols=770 Identities=14% Similarity=0.142 Sum_probs=404.7
Q ss_pred CCCHHHHHHHHHHHHHHh--cC------CCcHHHHHHHHh--cCCChhHHHHHHHHHHHhhhhhccCCCHHH--HHHHHH
Q 001584 14 MPDNDARRQAEDQIKRLA--KD------PQVVPALVQHLR--TAKTPNVRQLAAVLLRKKITGHWAKLSPQL--KQLVKQ 81 (1049)
Q Consensus 14 s~d~~~r~~a~~~L~~~~--~~------p~~~~~l~~il~--~~~~~~~R~~a~~~l~~~i~~~w~~~~~~~--~~~i~~ 81 (1049)
+.|..+++.+-.-|..+. ++ +.....+..++. -+..|.+|..|...++..+...-...+.+. .-..-.
T Consensus 106 stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak 185 (1176)
T KOG1248|consen 106 STNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAK 185 (1176)
T ss_pred cccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHcCCCCCccccchHHHHHHH
Confidence 667889998888886542 22 233445555543 366889999999998888765322222111 112222
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHh--ccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhccccc-HH
Q 001584 82 SLIESITLEHSAPVRRASANVVSIIAK--YAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPH-FA 158 (1049)
Q Consensus 82 ~ll~~l~~e~~~~vr~~~~~~l~~i~~--~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~-~~ 158 (1049)
.+++.+.+.-....-....+.+..+-. ..+|......+...++......+..++..+++++..+....+..+... ..
T Consensus 186 ~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a 265 (1176)
T KOG1248|consen 186 FCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNA 265 (1176)
T ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHH
Confidence 333434332111111122222222211 113332333455666777777788889999999999988777643322 23
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCC
Q 001584 159 DMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA 238 (1049)
Q Consensus 159 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 238 (1049)
.++..+...--+..+..+-.+-++++..........+ ...--.-+|.++.++..+..+..++....+-.++.++.....
T Consensus 266 ~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q-~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv 344 (1176)
T KOG1248|consen 266 RLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQ-EEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESV 344 (1176)
T ss_pred HHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhC-HHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccC
Confidence 3445554443332344444444555544332221111 111223457777777666777888888899999999988776
Q ss_pred cchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHH
Q 001584 239 PLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRA 318 (1049)
Q Consensus 239 ~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~ 318 (1049)
...+..=...+.-++.+ + --.+-..++.++..+.+..+.. ..+++.+.++.+..+=..++ ..-...
T Consensus 345 ~~~~~~c~~~~~~~l~~---k--f~~~~~~ilqi~s~~fek~G~~--s~~~l~~~L~~l~~lr~~~d-------~~~~~~ 410 (1176)
T KOG1248|consen 345 TVIDALCSKQLHSLLDY---K--FHAVWRFILQILSALFEKCGEL--SGPELTKTLEGLCDLRASPD-------FFHKLQ 410 (1176)
T ss_pred cccHHHHHHHHHHHHcc---h--HHHHHHHHHHHHHHHHHHhhhh--cCHHHHHHHHHHHHhhcCCC-------CccHHH
Confidence 62222111111111110 1 1233344556666665543331 11233334443332211111 122335
Q ss_pred HHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcCh-HHHHHhHHHHHHHHHh------hcCCCC
Q 001584 319 AAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA-EWMKEKLESVLHIVLG------ALRDPE 391 (1049)
Q Consensus 319 a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~-~~~~~~l~~i~~~l~~------~l~d~~ 391 (1049)
...+++......|...+-.++|.=. -.+...-.| .|.|-.+=++.. ..+.-+.+.++|.... .+.++.
T Consensus 411 ld~~IGSAV~AmGPe~vL~~lpLnl--~~~s~~~~R---sWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~ 485 (1176)
T KOG1248|consen 411 LDQCIGSAVRAMGPERVLTILPLNL--HAESLSFTR---SWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAG 485 (1176)
T ss_pred HHHHHHHHHHhhCHHHHHHHcchhc--cccccccch---hHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 5667777777777544444444311 111111111 111111111100 0011112233333322 122222
Q ss_pred hhH--HHHHH-H---HHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh---c------ccccc
Q 001584 392 QFV--RGAAS-F---ALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM---G------EEILP 456 (1049)
Q Consensus 392 ~~v--r~~a~-~---~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~---~------~~l~~ 456 (1049)
..+ -.+.. . .|-.||.. +-+....+..+.+.+...+... +..|...|.+|..+++.. . +.+..
T Consensus 486 ~~~~~~~tl~~QLW~LLP~FC~~-P~Dl~~sF~~la~~l~~al~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~ 563 (1176)
T KOG1248|consen 486 SQVSLYDTLVDQLWSLLPGFCNY-PVDLAESFTDLAPILGAALLKR-PELRETICNSLRMLVEQNKPSSDAAENKEVLSN 563 (1176)
T ss_pred CcHHHHHHHHHHHHHhChhhhCC-CccHHHHHHHHHHHHHHHHhcc-hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhh
Confidence 222 11111 1 12223333 2345556788889988888876 489999999999999874 1 23557
Q ss_pred chHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhh-hhccccHHHHHHHHHHHHhcc-ChhhhhhH-HHHHHHHHHHHH
Q 001584 457 FLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFMVLT-NDEDLRSR-ARATELLGLVAE 533 (1049)
Q Consensus 457 ~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~-~~~~~~~r-~~a~~~l~~l~~ 533 (1049)
|...+++.+++........-+ ..+.+......... ..|..-...+...+...+... .+.+...+ -.....+-.++.
T Consensus 564 ~AknfL~~lfn~ytq~~~~~~-~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~ 642 (1176)
T KOG1248|consen 564 DAKNFLPRLFNVYTQTVAAGR-KILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIA 642 (1176)
T ss_pred hhhHHHHHHHHHhcCCCcccc-ccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHh
Confidence 888999999998876544433 34444433333332 333333344444444444321 11111111 111222222221
Q ss_pred hhchhccccchHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcc--cCccCchhhhhHHHHhhccCCCCCccCCCCCch
Q 001584 534 SVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLE--DGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDD 611 (1049)
Q Consensus 534 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~--~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~ 611 (1049)
+++-.-...+..+....-...+..+..++.-++..+..++.... .-....+..+...|.+.++..+
T Consensus 643 -~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~----------- 710 (1176)
T KOG1248|consen 643 -LAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSS----------- 710 (1176)
T ss_pred -hhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccc-----------
Confidence 11111111222222111112234467788888899988887611 1112223333344443332111
Q ss_pred hhhccCCCCCCCcchhhcccccceeeeccchhhHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHhhhcCCChHHHHHHHH
Q 001584 612 ENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVF 691 (1049)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~ 691 (1049)
+ -.+..++.++..+...++.....++...+..++-...+.+..-|+.|..
T Consensus 711 ---------------------------~---~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~ 760 (1176)
T KOG1248|consen 711 ---------------------------S---PAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFA 760 (1176)
T ss_pred ---------------------------h---HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHH
Confidence 0 1577889999999888886666777777777665558888899999999
Q ss_pred HHHHHHH--HHHHhhccCCCChHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHH
Q 001584 692 ALKNILT--AAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATL 769 (1049)
Q Consensus 692 ~l~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~l~ 769 (1049)
+|..+.. .+. ..+.+.....++.+++.+...+..+ ...+...-+-++..++...+.....+++..+++.+-
T Consensus 761 lL~~i~~i~~~~------d~g~e~~~~~lnefl~~Isagl~gd-~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~ 833 (1176)
T KOG1248|consen 761 LLVFIGAIQSSL------DDGNEPASAILNEFLSIISAGLVGD-STRVVASDIVAITHILQEFKNILDDETLEKLISMVC 833 (1176)
T ss_pred HHHHHHHHHhhh------cccccchHHHHHHHHHHHHhhhccc-HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 9988874 222 1121112333444444444333232 222333336777788877775555678888888877
Q ss_pred HHHHhhhhhcCCCCCCCCCccccchhhHHHHHHHHhHHHHHHHHhCC-ChHHHHHHHHHHHHHhhccCCCcccchhhhHh
Q 001584 770 LLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGP-HFAPIFAKLFDPLMKFAKSSRPLQDRTMVVAT 848 (1049)
Q Consensus 770 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~ 848 (1049)
..|.... ..+..++...+..++..++. ...++.+.++|.++.++.+... .+|..+-..
T Consensus 834 ~~L~s~s--------------------reI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~-~~r~Kvr~L 892 (1176)
T KOG1248|consen 834 LYLASNS--------------------REIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKI-KVRKKVRLL 892 (1176)
T ss_pred HHHhcCC--------------------HHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhH-HHHHHHHHH
Confidence 7776543 22444778888888888887 5668999999999998887554 568888888
Q ss_pred HHHHHhhcCCc-hhhcHhhhHHHHHHhcC
Q 001584 849 LAEVARDMGSP-IAAYVDRVMPLVLKELA 876 (1049)
Q Consensus 849 l~~l~~~~~~~-~~~~~~~i~~~l~~~l~ 876 (1049)
+-.+++.+|.. +.+|+|...--++..++
T Consensus 893 lekLirkfg~~eLe~~~pee~~klL~nIR 921 (1176)
T KOG1248|consen 893 LEKLIRKFGAEELESFLPEEDMKLLTNIR 921 (1176)
T ss_pred HHHHHHHhCHHHHHhhCHHHHHHHHHHHH
Confidence 89999998876 55666655545555443
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.60 E-value=1.8e-11 Score=142.24 Aligned_cols=512 Identities=15% Similarity=0.146 Sum_probs=318.6
Q ss_pred HHHHHHHHHHHhhc-CCH-HHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhccc
Q 001584 77 QLVKQSLIESITLE-HSA-PVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFR 154 (1049)
Q Consensus 77 ~~i~~~ll~~l~~e-~~~-~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~ 154 (1049)
+.+.+.+-+.+.+- .+. .-++.+..++.....+. ....+.+.+.+++.+++...+..+...+..+....++
T Consensus 3 ~~~~~el~~~~~~~~~~~~~~~~~l~kli~~~~~G~----~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~--- 75 (526)
T PF01602_consen 3 KRISQELAKILNSFKIDISKKKEALKKLIYLMMLGY----DISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE--- 75 (526)
T ss_dssp HHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHHHTT-------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH---
T ss_pred chHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC----CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh---
Confidence 34455555555542 133 33344444554444332 3456889999999999999998888888877765553
Q ss_pred ccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 001584 155 PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELI 234 (1049)
Q Consensus 155 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~ 234 (1049)
...-+.+.+.+-+.+ +++.+|..|+++++++.. ..+.+.+...+.+.+.++++.+|+.|+-++..+.
T Consensus 76 -~~~l~~n~l~kdl~~-~n~~~~~lAL~~l~~i~~-----------~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~ 142 (526)
T PF01602_consen 76 -LLILIINSLQKDLNS-PNPYIRGLALRTLSNIRT-----------PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIY 142 (526)
T ss_dssp -HHHHHHHHHHHHHCS-SSHHHHHHHHHHHHHH-S-----------HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhhcC-CCHHHHHHHHhhhhhhcc-----------cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence 233356677777888 899999999999998763 2334566666666788899999999999999999
Q ss_pred ccCCcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCc
Q 001584 235 ESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLA 314 (1049)
Q Consensus 235 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~ 314 (1049)
...|..+... +++.+...+.++ ++.++..|+.++..+ +..+.... .++..++..+...+...++ |
T Consensus 143 ~~~p~~~~~~---~~~~l~~lL~d~--~~~V~~~a~~~l~~i-~~~~~~~~--~~~~~~~~~L~~~l~~~~~------~- 207 (526)
T PF01602_consen 143 RKDPDLVEDE---LIPKLKQLLSDK--DPSVVSAALSLLSEI-KCNDDSYK--SLIPKLIRILCQLLSDPDP------W- 207 (526)
T ss_dssp HHCHCCHHGG---HHHHHHHHTTHS--SHHHHHHHHHHHHHH-HCTHHHHT--THHHHHHHHHHHHHTCCSH------H-
T ss_pred ccCHHHHHHH---HHHHHhhhccCC--cchhHHHHHHHHHHH-ccCcchhh--hhHHHHHHHhhhcccccch------H-
Confidence 9888877664 233334444444 689999999998888 33332211 2444455555554433221 2
Q ss_pred HHHHHHHHHHHHHHHcchhch--HHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCCh
Q 001584 315 PDRAAAEVIDTMALNLAKHVF--PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQ 392 (1049)
Q Consensus 315 ~~~~a~~~l~~l~~~~~~~~~--~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~ 392 (1049)
........+..++...+ ... ..+++.+...+++.++.+...++.++..+..... .+..+++.+...+.++++
T Consensus 208 ~q~~il~~l~~~~~~~~-~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~ 281 (526)
T PF01602_consen 208 LQIKILRLLRRYAPMEP-EDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDP 281 (526)
T ss_dssp HHHHHHHHHTTSTSSSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHHHhcccCCh-hhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccc
Confidence 22333333332222111 111 3467777777777788888888887776665422 456788899999999999
Q ss_pred hHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhh-cC
Q 001584 393 FVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAAL-EN 471 (1049)
Q Consensus 393 ~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l-~~ 471 (1049)
.+|..++.++..++...++.+. + .-..+.....+++..+|..++..+..++.... ...+++.|...+ ..
T Consensus 282 nvr~~~L~~L~~l~~~~~~~v~-~---~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n------~~~Il~eL~~~l~~~ 351 (526)
T PF01602_consen 282 NVRYIALDSLSQLAQSNPPAVF-N---QSLILFFLLYDDDPSIRKKALDLLYKLANESN------VKEILDELLKYLSEL 351 (526)
T ss_dssp HHHHHHHHHHHHHCCHCHHHHG-T---HHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH------HHHHHHHHHHHHHHC
T ss_pred hhehhHHHHHHHhhcccchhhh-h---hhhhhheecCCCChhHHHHHHHHHhhcccccc------hhhHHHHHHHHHHhc
Confidence 9999999999999887644333 1 11122223337778999999999999886532 345777777777 44
Q ss_pred CCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHH
Q 001584 472 SPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAA 551 (1049)
Q Consensus 472 ~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l 551 (1049)
.+..++..++..++.++...+.....|+ +.+.+++...++ .....++..+..+.... ++.. ..++..+
T Consensus 352 ~d~~~~~~~i~~I~~la~~~~~~~~~~v----~~l~~ll~~~~~---~~~~~~~~~i~~ll~~~-~~~~----~~~l~~L 419 (526)
T PF01602_consen 352 SDPDFRRELIKAIGDLAEKFPPDAEWYV----DTLLKLLEISGD---YVSNEIINVIRDLLSNN-PELR----EKILKKL 419 (526)
T ss_dssp --HHHHHHHHHHHHHHHHHHGSSHHHHH----HHHHHHHHCTGG---GCHCHHHHHHHHHHHHS-TTTH----HHHHHHH
T ss_pred cchhhhhhHHHHHHHHHhccCchHHHHH----HHHHHhhhhccc---cccchHHHHHHHHhhcC-hhhh----HHHHHHH
Confidence 5788999999999999988755544444 444444443221 12333444444444332 2221 2344444
Q ss_pred HhccC-CCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCchhhhccCCCCCCCcchhhcc
Q 001584 552 ISGFG-LEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCER 630 (1049)
Q Consensus 552 ~~~l~-~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1049)
.+.+. ..+++++..+.+++|..+...+. .. ..+.++..+.+.....
T Consensus 420 ~~~l~~~~~~~~~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~~------------------------------- 466 (526)
T PF01602_consen 420 IELLEDISSPEALAAAIWILGEYGELIEN-TE-SAPDILRSLIENFIEE------------------------------- 466 (526)
T ss_dssp HHHHTSSSSHHHHHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHTTS-------------------------------
T ss_pred HHHHHHhhHHHHHHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhccc-------------------------------
Confidence 44443 34667889999999998887765 11 4445555555433210
Q ss_pred cccceeeeccchhhHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHhhhc--CCChHHHHHHHHHHHHH
Q 001584 631 SVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHAS--YFHEDVRYQAVFALKNI 696 (1049)
Q Consensus 631 ~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~vr~~a~~~l~~l 696 (1049)
..+.|..++.++..+....+.. ...+.+.+.+..+.. +.+.+||..|...+.-+
T Consensus 467 ----------~~~vk~~ilt~~~Kl~~~~~~~--~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 467 ----------SPEVKLQILTALAKLFKRNPEN--EVQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHSCST--THHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred ----------cHHHHHHHHHHHHHHHhhCCch--hhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 0126778888888877655421 112366666777666 77899999888765433
No 38
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.5e-09 Score=120.04 Aligned_cols=471 Identities=15% Similarity=0.135 Sum_probs=287.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccC-CCHHHHHHHHHHHHHhhhhhhh
Q 001584 73 PQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQS-EQEEHREVALILFSSLTETIGQ 151 (1049)
Q Consensus 73 ~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~-~~~~~~~~al~~l~~l~~~~~~ 151 (1049)
++..+.+.+.|+..+. +.+..||..+|..++.+++..-+ .--.+++..+.+++.- +++..-++|+.+|..++.. +=
T Consensus 336 ~eivE~vie~Lls~l~-d~dt~VrWSaAKg~grvt~rlp~-~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~r-Gl 412 (1133)
T KOG1943|consen 336 PEIVEFVIEHLLSALS-DTDTVVRWSAAKGLGRVTSRLPP-ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALR-GL 412 (1133)
T ss_pred HHHHHHHHHHHHHhcc-CCcchhhHHHHHHHHHHHccCcH-HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc-CC
Confidence 3677788888888888 59999999999999999987532 1224456666664432 2356677999999988743 21
Q ss_pred cccccHHHHHHHHHHhhCCC-------CChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHH
Q 001584 152 TFRPHFADMQALLLKCLQDE-------TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAV 224 (1049)
Q Consensus 152 ~~~~~~~~l~~~l~~~l~~~-------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~ 224 (1049)
.+...++.++|++.+++..+ ....||.+|+-.+-.+.+..+...-..-.+.+.+.++.. .+-+++-..|.
T Consensus 413 Llps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~---AlFDrevncRR 489 (1133)
T KOG1943|consen 413 LLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIV---ALFDREVNCRR 489 (1133)
T ss_pred cchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHH---HhcCchhhHhH
Confidence 22345678899999888752 345799999988888887765432111123344443332 34566777899
Q ss_pred HHHHHHHHHhccCCcc-hhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhh-hc
Q 001584 225 IAFEIFDELIESPAPL-LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPL-LA 302 (1049)
Q Consensus 225 ~~~~~l~~l~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~-l~ 302 (1049)
+|..++.+.+...+.+ .+-.+-..++ ...-..|..+..-+...+... ..|..++++.++.. +.
T Consensus 490 AAsAAlqE~VGR~~n~p~Gi~Lis~~d---------y~sV~~rsNcy~~l~~~ia~~------~~y~~~~f~~L~t~Kv~ 554 (1133)
T KOG1943|consen 490 AASAALQENVGRQGNFPHGISLISTID---------YFSVTNRSNCYLDLCVSIAEF------SGYREPVFNHLLTKKVC 554 (1133)
T ss_pred HHHHHHHHHhccCCCCCCchhhhhhcc---------hhhhhhhhhHHHHHhHHHHhh------hhHHHHHHHHHHhcccc
Confidence 9999999988765443 1111111111 123344555444333222111 23666788776654 88
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHH--HH----h-
Q 001584 303 ESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWM--KE----K- 375 (1049)
Q Consensus 303 ~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~--~~----~- 375 (1049)
+|+. ..|..++.+|..++...++......++.+....-+.+...|++...+.|.+..++...- .. .
T Consensus 555 HWd~-------~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~ 627 (1133)
T KOG1943|consen 555 HWDV-------KIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENR 627 (1133)
T ss_pred cccH-------HHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHH
Confidence 8876 77889999999999888866655555555566777888999999999999877643211 11 1
Q ss_pred ---HHHHHHHHHhhcCCCC--hhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHHHHhccCCChHHHHHHHHHHHHHHHh
Q 001584 376 ---LESVLHIVLGALRDPE--QFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDESDEVKEKSYYALAAFCED 449 (1049)
Q Consensus 376 ---l~~i~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~ 449 (1049)
+.++++.+...-.+.. ...|.+.+..+.++...-.+-....+ +..-..+.+.+.+++ .+|..+.++++.++..
T Consensus 628 i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~ 706 (1133)
T KOG1943|consen 628 IAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVST 706 (1133)
T ss_pred hhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHH
Confidence 1122333332222222 46677777777776654332222221 112222334445555 8999999999999987
Q ss_pred hccccccchH-HHHHHHHHhhcCC-CHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhccChh-hhhhHHHHHH
Q 001584 450 MGEEILPFLD-PLMGKLLAALENS-PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDE-DLRSRARATE 526 (1049)
Q Consensus 450 ~~~~l~~~~~-~ll~~l~~~l~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~r~~a~~ 526 (1049)
+... .++.. +++...+..+.+. +..+|....-+++.+.... ..-.+...+ +..++...... +..-|...+.
T Consensus 707 y~~~-d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~---i~~~~q~~l--c~~~l~~~p~d~~a~aR~~~V~ 780 (1133)
T KOG1943|consen 707 YVKA-DEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSEL---IHRHLQEKL--CKLVLELLPSDAWAEARQQNVK 780 (1133)
T ss_pred HHhc-CchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHh---hchHHHHHH--HHHHhccCcccccHHHHHHHHH
Confidence 6321 11222 4666666555554 5667766666666544221 111222222 33333322222 4445777788
Q ss_pred HHHHHHHhhchhccccchHHHHHHHHhccCCC--------CchhhHHHHHHHHHHHHHcc
Q 001584 527 LLGLVAESVGRARMEPILPPFVEAAISGFGLE--------FSELREYTHGFFSNIAGVLE 578 (1049)
Q Consensus 527 ~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~--------~~~~r~~~~~~l~~l~~~~~ 578 (1049)
.+..++..++...+.....++++.+++++++- ..-+|++++.++..+...+.
T Consensus 781 al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 781 ALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLS 840 (1133)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhc
Confidence 88888888875567777788888888887632 23389999999988877665
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=99.57 E-value=5.9e-10 Score=127.66 Aligned_cols=466 Identities=12% Similarity=0.090 Sum_probs=272.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHh-cCCCcHHHHHHHHhc---CCChhHHHHHHHHHHHhhhhhccCCCHHHHHHHH
Q 001584 5 LELLLIQFLMPDNDARRQAEDQIKRLA-KDPQVVPALVQHLRT---AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK 80 (1049)
Q Consensus 5 l~~ll~~~~s~d~~~r~~a~~~L~~~~-~~p~~~~~l~~il~~---~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~ 80 (1049)
+-+++..+.++|-+.||-.--.+..+. .+|+.....++.+++ ++++.+|-+|...+-+. -.++..+.+.
T Consensus 70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~I-------r~~~i~e~l~ 142 (746)
T PTZ00429 70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCI-------RVSSVLEYTL 142 (746)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC-------CcHHHHHHHH
Confidence 334555555666666666666665543 355543333333332 45666666665544433 2355666666
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCC-CCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHH
Q 001584 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAG-EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFAD 159 (1049)
Q Consensus 81 ~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~-~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~ 159 (1049)
..+.+++. +.++.||++++.++..+.... |+- .-.++++.+.+++.+.++.+..+|+.+|..+.+..+..+. ....
T Consensus 143 ~~lkk~L~-D~~pYVRKtAalai~Kly~~~-pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~ 219 (746)
T PTZ00429 143 EPLRRAVA-DPDPYVRKTAAMGLGKLFHDD-MQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSNE 219 (746)
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHhhC-cccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHHH
Confidence 66666666 588999999999999987643 211 1124567777778888888888998888888766553331 1222
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccC-C
Q 001584 160 MQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP-A 238 (1049)
Q Consensus 160 l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~-~ 238 (1049)
.+.-+.+.+.+ -++-.+...+++|.. +.+... ... -.+++.+...+++.++.+..++++++..+.... +
T Consensus 220 ~~~~Ll~~L~e-~~EW~Qi~IL~lL~~---y~P~~~--~e~----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~ 289 (746)
T PTZ00429 220 WVNRLVYHLPE-CNEWGQLYILELLAA---QRPSDK--ESA----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQ 289 (746)
T ss_pred HHHHHHHHhhc-CChHHHHHHHHHHHh---cCCCCc--HHH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCH
Confidence 23333444444 233345555666543 332211 111 234555555677788899999999998876543 2
Q ss_pred cchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHH
Q 001584 239 PLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRA 318 (1049)
Q Consensus 239 ~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~ 318 (1049)
......+..+...++.+. ++ ++++|..++..+..+....|..+.. -+...+-...++ ..++..
T Consensus 290 ~~~~~~~~rl~~pLv~L~-ss--~~eiqyvaLr~I~~i~~~~P~lf~~------~~~~Ff~~~~Dp--------~yIK~~ 352 (746)
T PTZ00429 290 ELIERCTVRVNTALLTLS-RR--DAETQYIVCKNIHALLVIFPNLLRT------NLDSFYVRYSDP--------PFVKLE 352 (746)
T ss_pred HHHHHHHHHHHHHHHHhh-CC--CccHHHHHHHHHHHHHHHCHHHHHH------HHHhhhcccCCc--------HHHHHH
Confidence 333333333334444442 22 6789999998888887766654432 122222111111 124444
Q ss_pred HHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHH
Q 001584 319 AAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAA 398 (1049)
Q Consensus 319 a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a 398 (1049)
..+.+-.++ .+.-+..++.-+.++..+.+...+..++.++|.++...+. ....++..++..+.+....+. .+
T Consensus 353 KLeIL~~La---ne~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~----~a~~cV~~Ll~ll~~~~~~v~-e~ 424 (746)
T PTZ00429 353 KLRLLLKLV---TPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS----VAPDCANLLLQIVDRRPELLP-QV 424 (746)
T ss_pred HHHHHHHHc---CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCchhHH-HH
Confidence 444444444 4444556667777777788889999999999999976554 344566666666665444343 45
Q ss_pred HHHHHHhHhhhcHHHHhhhhhHHHHHHHhcc---CCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHh
Q 001584 399 SFALGQFAEYLQPEIVSHYESVLPCILNALE---DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRN 475 (1049)
Q Consensus 399 ~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~---~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~ 475 (1049)
+.++..+....+.. + +++.++..+. -.++..+.+.+|.++.+++..++ .+.++..+++.+...+..
T Consensus 425 i~vik~IlrkyP~~---~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-----a~~~L~~~i~~f~~E~~~ 493 (746)
T PTZ00429 425 VTAAKDIVRKYPEL---L---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-----GKDIIQRFIDTIMEHEQR 493 (746)
T ss_pred HHHHHHHHHHCccH---H---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-----HHHHHHHHHhhhccCCHH
Confidence 66676666554321 1 4555554331 23467888899999998875532 456666666666667788
Q ss_pred HHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHH
Q 001584 476 LQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLV 531 (1049)
Q Consensus 476 v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l 531 (1049)
||.+++.+...+....+... ...+..+.+.... ++++.++|.+|......+
T Consensus 494 VqlqlLta~vKlfl~~p~~~----~~~l~~vL~~~t~-~~~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 494 VQLAILSAAVKMFLRDPQGM----EPQLNRVLETVTT-HSDDPDVRDRAFAYWRLL 544 (746)
T ss_pred HHHHHHHHHHHHHhcCcHHH----HHHHHHHHHHHHh-cCCChhHHHHHHHHHHHH
Confidence 99999988887776554332 2222222222222 123345677776555544
No 40
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=4.2e-12 Score=134.15 Aligned_cols=352 Identities=14% Similarity=0.141 Sum_probs=247.3
Q ss_pred CCChhHHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCC---CCcchHHH
Q 001584 47 AKTPNVRQLAAVLLRKKITG-HWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAG---EWPDLLPF 122 (1049)
Q Consensus 47 ~~~~~~R~~a~~~l~~~i~~-~w~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~---~w~~ll~~ 122 (1049)
+.++..+..+..-+|+.+.+ ..+.++.-.+..+...+.+.+..+.++.++.-++.++..|++...... .-..-+|.
T Consensus 77 S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~ 156 (514)
T KOG0166|consen 77 SDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPI 156 (514)
T ss_pred CCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHH
Confidence 55677788888888888765 225666777778888999999877789999999999999998653211 12456889
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccH--HHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHH
Q 001584 123 LFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF--ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKF 200 (1049)
Q Consensus 123 l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 200 (1049)
+.+++.+++..+++.|+.+|+.++...+.. ..+. ..+++.+...+..+........+.++|+++++.....+.....
T Consensus 157 fi~Ll~s~~~~v~eQavWALgNIagds~~~-Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v 235 (514)
T KOG0166|consen 157 FIQLLSSPSADVREQAVWALGNIAGDSPDC-RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVV 235 (514)
T ss_pred HHHHhcCCcHHHHHHHHHHHhccccCChHH-HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHH
Confidence 999999999999999999999998765532 1221 1244555566665233467778899999999988544444444
Q ss_pred HhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHH-HHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhh
Q 001584 201 REFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKY 279 (1049)
Q Consensus 201 ~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~ 279 (1049)
.. ++.++..++.+.|+++...+++++..+.+..+......+. .+++.+..++.+. +..++..|+..++.++..
T Consensus 236 ~~----iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~--~~~v~~PaLRaiGNIvtG 309 (514)
T KOG0166|consen 236 AP----ILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS--SPKVVTPALRAIGNIVTG 309 (514)
T ss_pred HH----HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC--CcccccHHHhhccceeec
Confidence 44 4455555678899999999999999988776664443332 2334444444433 333444444444433311
Q ss_pred hHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhc-CCChhHHhHHH
Q 001584 280 KYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQ-NASPKYREAAV 358 (1049)
Q Consensus 280 ~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~-~~~~~~r~~al 358 (1049)
.... .. .. +-...++.+...+. ++....|..|+
T Consensus 310 ~d~Q--------------------------------Tq---~v-----------i~~~~L~~l~~ll~~s~~~~ikkEAc 343 (514)
T KOG0166|consen 310 SDEQ--------------------------------TQ---VV-----------INSGALPVLSNLLSSSPKESIKKEAC 343 (514)
T ss_pred cHHH--------------------------------HH---HH-----------HhcChHHHHHHHhccCcchhHHHHHH
Confidence 0000 00 00 01234455555555 55667899999
Q ss_pred HHHHHHhhcChHHHHHhH-HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhccCCChHH
Q 001584 359 TAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDESDEV 435 (1049)
Q Consensus 359 ~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~v 435 (1049)
|.++.|..|.++.+...+ ..++|.++..+...+...|..|+|+++.++....++.-.|+ ..+++.++..|.-++.++
T Consensus 344 W~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~i 423 (514)
T KOG0166|consen 344 WTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKI 423 (514)
T ss_pred HHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHH
Confidence 999999999998877664 46899999999998899999999999999888766554554 468999999998888888
Q ss_pred HHHHHHHHHHHHHhhc
Q 001584 436 KEKSYYALAAFCEDMG 451 (1049)
Q Consensus 436 ~~~a~~~l~~l~~~~~ 451 (1049)
...+..++.++.+.-.
T Consensus 424 i~v~Ld~l~nil~~~e 439 (514)
T KOG0166|consen 424 ILVALDGLENILKVGE 439 (514)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888999998887653
No 41
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=3.9e-08 Score=106.68 Aligned_cols=501 Identities=14% Similarity=0.137 Sum_probs=292.6
Q ss_pred HHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCC-----CH-hHHHHHHHHHHHHHHHhhh--hccccH-HHHHH
Q 001584 434 EVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS-----PR-NLQETCMSAIGSVAAAAEQ--AFIPYA-ERVLE 504 (1049)
Q Consensus 434 ~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~-----~~-~v~~~~~~~l~~l~~~~~~--~~~~~~-~~~~~ 504 (1049)
.+|-.|-..+..+.+.+++-+.|++-.++..-.++.... +. -.+.++..+.|..+....+ +|..++ +.++|
T Consensus 412 ~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llp 491 (978)
T KOG1993|consen 412 NLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLP 491 (978)
T ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCH
Confidence 455555566667777777777777777766555554211 11 2455666666666655544 344444 33445
Q ss_pred HHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCC-CchhhHHHHHHHHHHHHHcc---cC
Q 001584 505 LLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLE-FSELREYTHGFFSNIAGVLE---DG 580 (1049)
Q Consensus 505 ~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~r~~~~~~l~~l~~~~~---~~ 580 (1049)
-+. ...+...-+|.+..-.+|.-. +-+.-.+.-+-+...+++.+++. |-.+|-.+...+.-+++-.. +.
T Consensus 492 El~----~~~~~~RiiRRRVa~ilg~Wv---svq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~ds 564 (978)
T KOG1993|consen 492 ELA----NDHGNSRIIRRRVAWILGQWV---SVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDS 564 (978)
T ss_pred Hhh----hcccchhHHHHHHHHHHhhhh---heechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhh
Confidence 444 222222234666555555433 32221222223334445556654 56678888888888887654 78
Q ss_pred ccCchhhhhHHHHhhccCCCCCccCCCCCchhhhccCCCCCCCcchhhcccccceeeeccchhhHHHHHHHHHHHHHHhh
Q 001584 581 FAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTK 660 (1049)
Q Consensus 581 ~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~ 660 (1049)
|.||++.+...+++.+.... ..+.|...+.+++.+....+
T Consensus 565 Flp~lenlf~~lfkll~~~~----------------------------------------e~Dtk~~VL~~ls~lI~r~~ 604 (978)
T KOG1993|consen 565 FLPYLENLFVLLFKLLKAVE----------------------------------------ECDTKTSVLNLLSTLIERVS 604 (978)
T ss_pred hhhhHHHHHHHHHHHHHHHh----------------------------------------hhhhHHHHHHHHHHHHHHHH
Confidence 99999999888887764210 01258889999999999999
Q ss_pred hhchhhHHHHHHHHHhhhc--CCChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHhhhC-Ch-HH
Q 001584 661 SSYAPFLEESLKILVRHAS--YFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTED-DD-KD 736 (1049)
Q Consensus 661 ~~~~~~~~~~~~~l~~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~-~~ 736 (1049)
+.+.||..++++.+..+=+ ..++-.|.+...++..++.+.+.. -...++.++|.+.....-+ ++ ..
T Consensus 605 e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~q----------S~~~~~fL~pVIel~~D~~sP~hv~ 674 (978)
T KOG1993|consen 605 EHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQ----------SFEFYPFLYPVIELSTDPSSPEHVY 674 (978)
T ss_pred HhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccC----------CccchHHHHHHHHHhcCCCCCceee
Confidence 9999999988887766522 344556888888899998887621 1233445555544333222 11 12
Q ss_pred HHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhHHHHHHHHhHHHHHHHHhCC
Q 001584 737 VVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGP 816 (1049)
Q Consensus 737 ~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 816 (1049)
.....++.....+... ..+.+.+-.+++.+...+..+.. .+.++...+.+.+-..+.
T Consensus 675 L~EDgmeLW~~~L~n~--~~l~p~ll~L~p~l~~~iE~ste---------------------~L~t~l~Ii~sYilLd~~ 731 (978)
T KOG1993|consen 675 LLEDGMELWLTTLMNS--QKLTPELLLLFPHLLYIIEQSTE---------------------NLPTVLMIISSYILLDNT 731 (978)
T ss_pred hhhhHHHHHHHHHhcc--cccCHHHHHHHHHHHHHHHhhhh---------------------hHHHHHHHHHHHHhhccH
Confidence 2344555555554322 34566666777777777765431 122555666666655555
Q ss_pred ChH-HHHHHHHHHHHHhhccCCCcccchhhhHhHHHHHhhcCCchhh-cHhhhHHHHHHhc--CCCChHhHHHHHHHHHH
Q 001584 817 HFA-PIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAA-YVDRVMPLVLKEL--ASPDAMNRRNAAFCVGE 892 (1049)
Q Consensus 817 ~~~-~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~~~~i~~~l~~~l--~~~~~~vr~~a~~~lg~ 892 (1049)
.|. .|...++..+.+.+.+-+.. .-...+.++.-+++..+ ...+ +.+.++|.+...+ .++.|.+.......+|+
T Consensus 732 ~fl~~y~~~i~k~~~~~l~dvr~e-gl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaR 809 (978)
T KOG1993|consen 732 VFLNDYAFGIFKKLNDLLDDVRNE-GLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVAR 809 (978)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHH
Confidence 555 46677888888777654432 23344444444444321 1121 3444555555443 35566676666666666
Q ss_pred HHhhcCcchhhHHHHHHHhhhhhhCCCCCChhHHhhHHHHHHHHHHhCCCCCChhhHHHHHHhhCCCCCcHHhhHHHHHH
Q 001584 893 LCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNC 972 (1049)
Q Consensus 893 l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~l~~~l~~lp~~~d~~e~~~~~~~ 972 (1049)
+.-..++. +..+++... ..| +. +..++..|...++...+-+..+.-.-+
T Consensus 810 i~l~n~~~----~msvlqt~~-----------~~d---~~-------------~~~li~~WI~~~~~I~~~k~rKl~~La 858 (978)
T KOG1993|consen 810 ISLRNPSL----FMSVLQTKN-----------TYD---IL-------------IAMLIGNWILLFDHINHPKDRKLNTLA 858 (978)
T ss_pred HHhcChHH----HHHHHHhhh-----------hHH---HH-------------HHHHHHHHHHHcccCCCHHHhhHHHHH
Confidence 66665552 233332221 000 00 234556666666555555555555566
Q ss_pred HHHHHhhCChhhcchhhHHHHHHHHHhcCC------------------------------------------CCChHHHH
Q 001584 973 ISTLVLSSNPQILSLVPELVNLFAEVVVSP------------------------------------------EESSEVKS 1010 (1049)
Q Consensus 973 l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~------------------------------------------~~~~~~~~ 1010 (1049)
+..++..+++.+...++.|+++..+++..- --+-..+.
T Consensus 859 lsSll~t~~~~ila~~~~I~nl~~e~L~eV~ed~~g~~~~~~~~d~~~e~~~~~d~tteq~~r~k~l~lkDPVh~vsl~~ 938 (978)
T KOG1993|consen 859 LSSLLRTNNPDILAVLDSIMNLWFEVLSEVMEDANGDATDYHLNDDLSEQGVYEDETTEQDTRHKQLLLKDPVHSVSLRS 938 (978)
T ss_pred HHHHhccCCcHHHHHHhHHHHHHHHHHHHHhhhccCchHHHHhhhhhhccccCCchhhHHHHHHHHHhccCCcccccHHH
Confidence 667777777777777777776665544210 00123566
Q ss_pred HHHHHHHHHHHHhhhh-HHHHHhcCCHHHHHHHHhhcC
Q 001584 1011 QVGMAFSHLISLYGQQ-MQPLLSNLSPAHATALAAFAP 1047 (1049)
Q Consensus 1011 ~~~~~l~~l~~~~~~~-~~~~~~~l~~~~~~~l~~~~~ 1047 (1049)
-+...++.+....|.+ +++++++..|+.++.+|.+++
T Consensus 939 fi~~~l~~~q~~lG~q~yqq~l~tVnp~lleqlq~fl~ 976 (978)
T KOG1993|consen 939 FIISVLMFLQDALGEQRYQQYLSTVNPELLEQLQMFLS 976 (978)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHHc
Confidence 6777788888888854 899999999999999998875
No 42
>PTZ00429 beta-adaptin; Provisional
Probab=99.55 E-value=1.4e-09 Score=124.58 Aligned_cols=504 Identities=12% Similarity=0.115 Sum_probs=304.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH-HhcCCCcHHHHHHHHh--cCCChhHHHHHHHHHHHhhhhhccCCCHHHHHHHH
Q 001584 4 SLELLLIQFLMPDNDARRQAEDQIKR-LAKDPQVVPALVQHLR--TAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK 80 (1049)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~a~~~L~~-~~~~p~~~~~l~~il~--~~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~ 80 (1049)
++.++-..+.|++...|+.|-..+-. +...-+.-..+..++. .+++..+|++.-.++.++. ...++..-...
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya-----~~~pelalLaI 107 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTA-----RLQPEKALLAV 107 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----ccChHHHHHHH
Confidence 34555566678888888888888754 3333343333333332 3678999999999988773 33455555566
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHH
Q 001584 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADM 160 (1049)
Q Consensus 81 ~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l 160 (1049)
+.+.+-+. ++++.+|-.+...++.|-. + ...+.+++.+.+++.+.++.+|..|..++..+....++.+. -..+
T Consensus 108 Ntl~KDl~-d~Np~IRaLALRtLs~Ir~---~-~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~--~~~~ 180 (746)
T PTZ00429 108 NTFLQDTT-NSSPVVRALAVRTMMCIRV---S-SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY--QQDF 180 (746)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHcCCc---H-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc--ccch
Confidence 67777777 4899999777666666543 3 25566788889999999999999999999999877664431 1234
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcc
Q 001584 161 QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (1049)
Q Consensus 161 ~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (1049)
.+.+..++.| +++.|...|+.+|..+....++. .......+..++.. +.+-++-.....+++|.. ..|.
T Consensus 181 ~~~L~~LL~D-~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll~~----L~e~~EW~Qi~IL~lL~~---y~P~- 249 (746)
T PTZ00429 181 KKDLVELLND-NNPVVASNAAAIVCEVNDYGSEK--IESSNEWVNRLVYH----LPECNEWGQLYILELLAA---QRPS- 249 (746)
T ss_pred HHHHHHHhcC-CCccHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHHHH----hhcCChHHHHHHHHHHHh---cCCC-
Confidence 4556667788 99999999999999987654321 22223333334333 333344445555566543 2222
Q ss_pred hhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHH
Q 001584 241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAA 320 (1049)
Q Consensus 241 ~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~ 320 (1049)
-......+++.+...+.+. .+.+...|+.++..+.........+ .....+...++.++ ..+ .+.+..+.
T Consensus 250 ~~~e~~~il~~l~~~Lq~~--N~AVVl~Aik~il~l~~~~~~~~~~-~~~~rl~~pLv~L~-ss~-------~eiqyvaL 318 (746)
T PTZ00429 250 DKESAETLLTRVLPRMSHQ--NPAVVMGAIKVVANLASRCSQELIE-RCTVRVNTALLTLS-RRD-------AETQYIVC 318 (746)
T ss_pred CcHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhcCcCCHHHHH-HHHHHHHHHHHHhh-CCC-------ccHHHHHH
Confidence 1223445666666555554 5778878877777665321111111 01111222223332 222 25677777
Q ss_pred HHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHH
Q 001584 321 EVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASF 400 (1049)
Q Consensus 321 ~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~ 400 (1049)
..+..+....+.-+.+. +..+....++++ ..|...+..|..++.. .++..|+.-+.....+.+..++..+..
T Consensus 319 r~I~~i~~~~P~lf~~~-~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane------~Nv~~IL~EL~eYa~d~D~ef~r~aIr 390 (746)
T PTZ00429 319 KNIHALLVIFPNLLRTN-LDSFYVRYSDPP-FVKLEKLRLLLKLVTP------SVAPEILKELAEYASGVDMVFVVEVVR 390 (746)
T ss_pred HHHHHHHHHCHHHHHHH-HHhhhcccCCcH-HHHHHHHHHHHHHcCc------ccHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 77777777665333222 222222234444 5788899988888764 456678888888888989999999999
Q ss_pred HHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhh---cCCCHhHH
Q 001584 401 ALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAAL---ENSPRNLQ 477 (1049)
Q Consensus 401 ~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l---~~~~~~v~ 477 (1049)
++|.++..++. ..+.++..|+..+.+... +...++..+..+++.+++. + ++..+...+ .-.++..|
T Consensus 391 AIg~lA~k~~~----~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~---~---il~~L~~~~~~~~i~e~~AK 459 (746)
T PTZ00429 391 AIASLAIKVDS----VAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPEL---L---MLDTLVTDYGADEVVEEEAK 459 (746)
T ss_pred HHHHHHHhChH----HHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccH---H---HHHHHHHhhcccccccHHHH
Confidence 99999987643 334466667777765443 4446788888888877653 1 344444433 22567889
Q ss_pred HHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhcc--
Q 001584 478 ETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGF-- 555 (1049)
Q Consensus 478 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l-- 555 (1049)
...++.+|..+...++ .. ..+..++....++...+|...+.+...+.... + +.....+..+++..
T Consensus 460 aaiiWILGEy~~~I~~-----a~---~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~-p----~~~~~~l~~vL~~~t~ 526 (746)
T PTZ00429 460 VSLLWMLGEYCDFIEN-----GK---DIIQRFIDTIMEHEQRVQLAILSAAVKMFLRD-P----QGMEPQLNRVLETVTT 526 (746)
T ss_pred HHHHHHHHhhHhhHhh-----HH---HHHHHHHhhhccCCHHHHHHHHHHHHHHHhcC-c----HHHHHHHHHHHHHHHh
Confidence 9999999987765433 11 22333333222233345544444444433222 1 12234444555332
Q ss_pred CCCCchhhHHHHHHHHHH
Q 001584 556 GLEFSELREYTHGFFSNI 573 (1049)
Q Consensus 556 ~~~~~~~r~~~~~~l~~l 573 (1049)
.++++++|+.++..|.-+
T Consensus 527 ~~~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 527 HSDDPDVRDRAFAYWRLL 544 (746)
T ss_pred cCCChhHHHHHHHHHHHH
Confidence 256789999998777644
No 43
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.8e-12 Score=136.95 Aligned_cols=360 Identities=16% Similarity=0.186 Sum_probs=259.5
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhhhhhh-ccc-ccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhH
Q 001584 120 LPFLFQFSQSEQEEHREVALILFSSLTETIGQ-TFR-PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEV 197 (1049)
Q Consensus 120 l~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~-~~~-~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~ 197 (1049)
.+...+.+.+.+...+..+...+..+...... -+. -....+++.+..++..+.++.++..|.++|.+++.-..+....
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 56666777777877777888777777643321 111 1122567888888875478999999999999998865432222
Q ss_pred HHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHH-HHHHHHHHhhhCCCCChHHHHHHHHHHHHH
Q 001584 198 VKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWL 276 (1049)
Q Consensus 198 ~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l 276 (1049)
..-.+-+|.++. ++.+++.+++..+.++|..++...+.+=+-.+. ..++.++......+ .....+.+..+++.+
T Consensus 148 vv~agavp~fi~----Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~-~~~~lRn~tW~LsNl 222 (514)
T KOG0166|consen 148 VVDAGAVPIFIQ----LLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSD-KLSMLRNATWTLSNL 222 (514)
T ss_pred cccCCchHHHHH----HhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcccc-chHHHHHHHHHHHHH
Confidence 112345566554 467889999999999999999887665444332 34555555554442 246777888899999
Q ss_pred Hhhh-HhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchh----chHHHHHHHHhhhcCCCh
Q 001584 277 AKYK-YNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH----VFPPVFEFASVSCQNASP 351 (1049)
Q Consensus 277 ~~~~-~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~----~~~~ll~~l~~~l~~~~~ 351 (1049)
++.+ |..- ..-+.++++.+..++...|+ .+...|.+++..++..-.+. +-..+.+.+...+.+.+.
T Consensus 223 crgk~P~P~--~~~v~~iLp~L~~ll~~~D~-------~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~ 293 (514)
T KOG0166|consen 223 CRGKNPSPP--FDVVAPILPALLRLLHSTDE-------EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP 293 (514)
T ss_pred HcCCCCCCc--HHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc
Confidence 8764 2111 11346688888888877765 67788899999888655421 124567777788889999
Q ss_pred hHHhHHHHHHHHHhhcChHHHHHhH-HHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHHHHhc
Q 001584 352 KYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNAL 428 (1049)
Q Consensus 352 ~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l 428 (1049)
..+..|+.++|.|+.|........+ ...+|.+...+. ++...+|..|+|++++++..-...++..+ ..++|.|+..+
T Consensus 294 ~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l 373 (514)
T KOG0166|consen 294 KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLL 373 (514)
T ss_pred ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHH
Confidence 9999999999999988765443332 256788888888 67777999999999999987666665544 47999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHhhccccccchH--HHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhh
Q 001584 429 EDESDEVKEKSYYALAAFCEDMGEEILPFLD--PLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ 493 (1049)
Q Consensus 429 ~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~--~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~ 493 (1049)
+..+-++|..|++++.+++.....+...|+- .+++.+..+|...+.++-..++.++..+-...+.
T Consensus 374 ~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~ 440 (514)
T KOG0166|consen 374 QTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEA 440 (514)
T ss_pred hccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998776544444443 4677788888778888889999999988776543
No 44
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=7.5e-11 Score=123.43 Aligned_cols=454 Identities=17% Similarity=0.190 Sum_probs=278.4
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHhh--cCCHHHHHH
Q 001584 21 RQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITL--EHSAPVRRA 98 (1049)
Q Consensus 21 ~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~--e~~~~vr~~ 98 (1049)
.+|-.+|+++++.++.+..+-+++....+....-+|+..+|++++..+..+++.....+|+.++..+.. +..+.+|.+
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~~i~tQ 81 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQKCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPDVIRTQ 81 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCchHHHH
Confidence 468899999999999999999999877788999999999999999999999998888888877776652 344589999
Q ss_pred HHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhh---------------cccccHHHHHHH
Q 001584 99 SANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ---------------TFRPHFADMQAL 163 (1049)
Q Consensus 99 ~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~---------------~~~~~~~~l~~~ 163 (1049)
++-+++.++-+. | .|.+-++.+++.+.+..+. .-.-+.+|..+.+...+ .+......++..
T Consensus 82 L~vavA~Lal~~-~--~W~n~I~e~v~~~~~~~~~-~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~~~~L~~ 157 (559)
T KOG2081|consen 82 LAVAVAALALHM-P--EWVNPIFELVRALSNKHPA-VPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQVSKVLVF 157 (559)
T ss_pred HHHHHHHHHHHh-H--hhcchHHHHHHHhhcCCcc-HHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhHHHHHHH
Confidence 999999999765 3 7999888888888776665 23445566666554321 122333445566
Q ss_pred HHHhhCCC--CChHHHHHHHHHHHHhhcccCCh-hhHHH----------------------------------------H
Q 001584 164 LLKCLQDE--TSNRVRIAALKAIGSFLEFTNDG-AEVVK----------------------------------------F 200 (1049)
Q Consensus 164 l~~~l~~~--~~~~vr~~a~~~l~~~~~~~~~~-~~~~~----------------------------------------~ 200 (1049)
+..+++.+ ++..+-..++++++++.....-+ ..... +
T Consensus 158 l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll~~~~~~~~~~~~ 237 (559)
T KOG2081|consen 158 LSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDELHEEATECICALLYCSLDRSEGLPL 237 (559)
T ss_pred HHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHHHHhhhhhccCch
Confidence 66666542 22445556666666654421100 00000 0
Q ss_pred H---hhhHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHhc-------cCCcchhhhHHHHHHHHHHhhhCCCCChHHHHHH
Q 001584 201 R---EFIPSILNVSRQC-LASGEEDVAVIAFEIFDELIE-------SPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQA 269 (1049)
Q Consensus 201 ~---~~~~~ll~~l~~~-l~~~~~~~~~~~~~~l~~l~~-------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a 269 (1049)
. -.-+.++....+. ....+.+.....++++.++.+ ..|..+ ..+++.++-..+.+ +.++-...
T Consensus 238 ~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~----l~~vellLl~~~h~--~~evie~S 311 (559)
T KOG2081|consen 238 AAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEF----LRIVELLLLVAGHN--DTEVIEAS 311 (559)
T ss_pred hHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcc----hhHHHHHHHhccCC--chhhhhhh
Confidence 0 0011122222221 123445555555566655544 334422 23444444444444 44777778
Q ss_pred HHHHHHHHhhhHh--hhhhcCChHHHHHHHhhhh----ccCC-C----CCCCCCCcHHHHHHHHHHHHHHHcc-hhchHH
Q 001584 270 IQIISWLAKYKYN--SLKKHKLVIPILQVMCPLL----AESN-E----AGEDDDLAPDRAAAEVIDTMALNLA-KHVFPP 337 (1049)
Q Consensus 270 ~~~l~~l~~~~~~--~~~~~~~~~~il~~l~~~l----~~~~-~----~~~d~~~~~~~~a~~~l~~l~~~~~-~~~~~~ 337 (1049)
+.+|..+.+.-.. .-...+.+.++...++.++ .-+. . +++++....|....+++..++..+| ...+..
T Consensus 312 F~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~ 391 (559)
T KOG2081|consen 312 FNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQ 391 (559)
T ss_pred HHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 8888887652110 0000012233333333333 2222 1 1222333567778888888888888 555666
Q ss_pred HHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh
Q 001584 338 VFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY 417 (1049)
Q Consensus 338 ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 417 (1049)
+...+.+ .++.|..-+|+++.+..++......-.+.+++++..+.+.-. ...+|++++-.+|.++++... ....+
T Consensus 392 ~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~--Q~~~~~ts~ll~g~~~ew~~~-~p~~l 466 (559)
T KOG2081|consen 392 MYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPE--QAPLRYTSILLLGEYSEWVEQ-HPELL 466 (559)
T ss_pred HHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCcc--chhHHHHHHHHHHHHHHHHHh-CcHHH
Confidence 6555544 467899999999999999998665444455566665555432 333999999999999999742 23445
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcC-CCHhHHHHHHHHHHHHHHHhh
Q 001584 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN-SPRNLQETCMSAIGSVAAAAE 492 (1049)
Q Consensus 418 ~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~-~~~~v~~~~~~~l~~l~~~~~ 492 (1049)
+.++..+..+++... ...++..++..++..+...+.+.++.+...+..+... .+..... .+..++.++...+
T Consensus 467 e~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~~e~a~-l~~~~s~i~~~lp 539 (559)
T KOG2081|consen 467 EPVLRYIRQGLQLKR--LASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQINEEAAC-LLQGISLIISNLP 539 (559)
T ss_pred HHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHhcCC
Confidence 566666677777664 7778888888888888766665555554443333221 1233333 5566665555443
No 45
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.48 E-value=4e-08 Score=108.42 Aligned_cols=652 Identities=15% Similarity=0.157 Sum_probs=330.6
Q ss_pred hcCCHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHh----hhhhcC-Ch
Q 001584 216 ASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYN----SLKKHK-LV 290 (1049)
Q Consensus 216 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~-~~ 290 (1049)
.+.+..+|..|-..+..+-.... +-..+..++.+++.+-..|..|+-.+...++.+.. .++... -.
T Consensus 14 ls~d~~vr~~AE~~l~qle~~~~---------f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~~ 84 (1005)
T KOG2274|consen 14 LSADQNVRSQAETQLKQLELTEG---------FGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIVS 84 (1005)
T ss_pred cCCChhHHHHHHHHHhccccchH---------HHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCccc
Confidence 34566666655555544322211 22233344555555667788887666666654321 111111 11
Q ss_pred HH----HHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhh
Q 001584 291 IP----ILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISE 366 (1049)
Q Consensus 291 ~~----il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~ 366 (1049)
.+ |...++..+-+ +....+.+.+.++..++..-=.+-||.+++.+...+.+.|....++|+.+|..+..
T Consensus 85 e~~K~~IRe~Ll~~l~~-------sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ 157 (1005)
T KOG2274|consen 85 EEVKALIREQLLNLLDD-------SNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSD 157 (1005)
T ss_pred HHHHHHHHHHHHhhhhc-------cccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence 11 22333333331 12256777788888888755567899999999999999888899999999998876
Q ss_pred cCh-HHHHHhHHHHHHHHHhh---cCCCChhHHHHHH--HHHHHhHhhh---c----HHHHhhhhhHHH----HHHHhcc
Q 001584 367 GCA-EWMKEKLESVLHIVLGA---LRDPEQFVRGAAS--FALGQFAEYL---Q----PEIVSHYESVLP----CILNALE 429 (1049)
Q Consensus 367 ~~~-~~~~~~l~~i~~~l~~~---l~d~~~~vr~~a~--~~l~~l~~~~---~----~~~~~~~~~ll~----~l~~~l~ 429 (1049)
... +.+....+-.++.+... ....+...|..+. ..+..+...+ . ...+..+.++++ .+...++
T Consensus 158 ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~ 237 (1005)
T KOG2274|consen 158 EVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQ 237 (1005)
T ss_pred HHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 542 22222222223332222 2233333333333 2222111111 1 111223333343 3333333
Q ss_pred CCC---hHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcC----------------------CC------HhHHH
Q 001584 430 DES---DEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN----------------------SP------RNLQE 478 (1049)
Q Consensus 430 ~~~---~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~----------------------~~------~~v~~ 478 (1049)
-+. -..+....+++..+.++++..+.||+..+++..++.+.. .+ ...-.
T Consensus 238 ~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i 317 (1005)
T KOG2274|consen 238 RNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVI 317 (1005)
T ss_pred ccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhh
Confidence 222 246778889999999999877777766555555443311 00 11223
Q ss_pred HHHHHHHHHHHHhh--hhccccHHHHHHHHHHHHhcc-----------------ChhhhhhHHHHHHHHHHHHHhhchhc
Q 001584 479 TCMSAIGSVAAAAE--QAFIPYAERVLELLKIFMVLT-----------------NDEDLRSRARATELLGLVAESVGRAR 539 (1049)
Q Consensus 479 ~~~~~l~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~-----------------~~~~~~~r~~a~~~l~~l~~~~~~~~ 539 (1049)
..++.++.++.... +.+..-...++..+..+++.. .++....|..+...+-.+....|...
T Consensus 318 ~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd~~~~v~~~f~~~~ 397 (1005)
T KOG2274|consen 318 QIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRDLLLEVITTFGNEG 397 (1005)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHHHHHHHHHhccchh
Confidence 45555555554321 122221222222222221110 01111122222233333333344333
Q ss_pred cccchHHHHHHHHh-----ccCCC-CchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCchhh
Q 001584 540 MEPILPPFVEAAIS-----GFGLE-FSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDEN 613 (1049)
Q Consensus 540 ~~~~~~~i~~~l~~-----~l~~~-~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~ 613 (1049)
..+..+..-..+.. .++.+ .|.+.+..+.+.+... .+...-.++..+...+...+.+.
T Consensus 398 i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~--~~~~~dd~l~~l~~~~~~~l~~~-------------- 461 (1005)
T KOG2274|consen 398 INPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVR--IDDANDDKLIELTIMIDNGLVYQ-------------- 461 (1005)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcc--cCcchHHHHHHHHHHHHhhcccc--------------
Confidence 33332221111111 11111 2333333333222222 11111111111111111111100
Q ss_pred hccCCCCCCCcchhhcccccceeeeccchhhHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHhhh-cCCChHHHHHHHHH
Q 001584 614 INGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHA-SYFHEDVRYQAVFA 692 (1049)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vr~~a~~~ 692 (1049)
... ..--.|+++++.++...... .+.+..++...+..+ -+..+.+|..|+.+
T Consensus 462 -------------------------e~P-~Ll~Ra~~~i~~fs~~~~~~-~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~ 514 (1005)
T KOG2274|consen 462 -------------------------ESP-FLLLRAFLTISKFSSSTVIN-PQLLQHFLNATVNALTMDVPPPVKISAVRA 514 (1005)
T ss_pred -------------------------cCH-HHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhhccCCCCchhHHHHHH
Confidence 000 11225788888777664321 233444444444432 34556678888887
Q ss_pred HHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHH
Q 001584 693 LKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLL 772 (1049)
Q Consensus 693 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~l~~~l 772 (1049)
++..++ +..+.++.+.++..+.+... ....++..-.++++..+++. .+..-...-..+.+.+..++
T Consensus 515 ~~~~~~------------~~vl~~~~p~ild~L~qlas-~~s~evl~llmE~Ls~vv~~-dpef~as~~skI~P~~i~lF 580 (1005)
T KOG2274|consen 515 FCGYCK------------VKVLLSLQPMILDGLLQLAS-KSSDEVLVLLMEALSSVVKL-DPEFAASMESKICPLTINLF 580 (1005)
T ss_pred HHhccC------------ceeccccchHHHHHHHHHcc-cccHHHHHHHHHHHHHHhcc-ChhhhhhhhcchhHHHHHHH
Confidence 766542 23455666677777766443 34566777778888777653 32222233345666666666
Q ss_pred HhhhhhcCCCCCCCCCccccchhhHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhccCC---CcccchhhhHhH
Q 001584 773 REESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSR---PLQDRTMVVATL 849 (1049)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~---~~~~r~~a~~~l 849 (1049)
.... ++..+...+-+++..+... .....++...++|.++..++... +......|+.++
T Consensus 581 ~k~s------------------~DP~V~~~~qd~f~el~q~-~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvL 641 (1005)
T KOG2274|consen 581 LKYS------------------EDPQVASLAQDLFEELLQI-AANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVL 641 (1005)
T ss_pred HHhc------------------CCchHHHHHHHHHHHHHHH-HHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHH
Confidence 6543 2224555666666666653 33455788899999998876443 345678999999
Q ss_pred HHHHhhcCCchhh-cHhhhHHHHHHhc-CCCChHhHHHHHHHHHHHHhhcCcchhhH-------HHHHHHhhhhhhCCCC
Q 001584 850 AEVARDMGSPIAA-YVDRVMPLVLKEL-ASPDAMNRRNAAFCVGELCKNGGESALKY-------YGDILRGLYPLFGDSE 920 (1049)
Q Consensus 850 ~~l~~~~~~~~~~-~~~~i~~~l~~~l-~~~~~~vr~~a~~~lg~l~~~~~~~~~~~-------~~~~l~~L~~~l~~~~ 920 (1049)
..++++.++.+.. .+...+|.+.++. ..+|...-+++-.||..++..+.++...+ +-.+++.+.+++. ++
T Consensus 642 ttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLd-p~ 720 (1005)
T KOG2274|consen 642 TTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLD-PE 720 (1005)
T ss_pred HHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcC-Cc
Confidence 9999998877543 6788899998874 46678899999999999988865543221 2245555555553 33
Q ss_pred CChhHHhhHHHHHHHHHHhCCCCC-C-hhhHHHHHHhhCCCC
Q 001584 921 PDDAVRDNAAGAVARMIMVNPQSI-P-LNQVLPVLLKVLPLK 960 (1049)
Q Consensus 921 ~~~~~~~~a~~~l~~i~~~~~~~~-~-~~~~l~~~l~~lp~~ 960 (1049)
..+.+.-++...+..++...+..+ | +++++...++.|...
T Consensus 721 ~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~a 762 (1005)
T KOG2274|consen 721 TSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQA 762 (1005)
T ss_pred cchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHh
Confidence 333332233233333333334333 2 677888877777644
No 46
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.43 E-value=1.6e-09 Score=122.49 Aligned_cols=562 Identities=15% Similarity=0.102 Sum_probs=352.2
Q ss_pred CHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCC
Q 001584 92 SAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDE 171 (1049)
Q Consensus 92 ~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 171 (1049)
+-.-|.....-+..++....+...-.+++|++.+.. ..+..+...+..-++.+....+. ..+...+.+.+.....+
T Consensus 95 di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~--~~~~~~ll~~le~l~~~- 170 (759)
T KOG0211|consen 95 DIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGG--PEYAHMLLPPLELLATV- 170 (759)
T ss_pred hhhhhhhhhccccchhhhcccchhhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccc--hhHHHHhhHHHHhhhHH-
Confidence 444555566666666655443323567899999988 55667777776667777665442 12333455666666666
Q ss_pred CChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCC-cchhhhHHHHHH
Q 001584 172 TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA-PLLGDSVKSIVH 250 (1049)
Q Consensus 172 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~l~~ 250 (1049)
....||..++..+...+...+.... ...++|.+... ...+....+..++..+...+...+ +.++..+..+
T Consensus 171 eet~vr~k~ve~l~~v~~~~~~~~~---~~~lv~l~~~l----~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~-- 241 (759)
T KOG0211|consen 171 EETGVREKAVESLLKVAVGLPKEKL---REHLVPLLKRL----ATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPI-- 241 (759)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHH---HHHHHHHHHHc----cchhhhhcchhhhhhhHHhccCCChHHHHHHHHHH--
Confidence 6777999999999998877754321 23333333332 222222345566666666655444 4444444333
Q ss_pred HHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHc
Q 001584 251 FSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNL 330 (1049)
Q Consensus 251 ~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~ 330 (1049)
..+++.+. .+.+|..+..-++.++..-+....+. .+++....+..+ +..++|.+|.+.+..+...+
T Consensus 242 -~~~lc~d~--~~~Vr~~~a~~l~~~a~~~~~~~~~s----~v~~~~~~L~~D-------dqdsVr~~a~~~~~~l~~l~ 307 (759)
T KOG0211|consen 242 -VQSLCQDD--TPMVRRAVASNLGNIAKVLESEIVKS----EVLPTLIQLLRD-------DQDSVREAAVESLVSLLDLL 307 (759)
T ss_pred -HHhhcccc--chhhHHHHHhhhHHHHHHHHHHHHHh----hccHHHhhhhhc-------chhhHHHHHHHHHHHHHHhc
Confidence 33444433 67888888777777765544322221 122222222222 23489999999999988877
Q ss_pred c-h-hchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhh
Q 001584 331 A-K-HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEY 408 (1049)
Q Consensus 331 ~-~-~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 408 (1049)
. . +....+.+.+.+..++.+|++|+........+.+..+.. ..-....+.....++|....+|.++..-...++..
T Consensus 308 ~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~--~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~ 385 (759)
T KOG0211|consen 308 DDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPS--ATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACY 385 (759)
T ss_pred CCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccc--cCcccchhhHHHHhcchhhhhhHHhhcchHHHhhh
Confidence 7 4 566677777777888999999987766666655543331 11235678888889999999999998888888877
Q ss_pred hcHHHH--hhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHH
Q 001584 409 LQPEIV--SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGS 486 (1049)
Q Consensus 409 ~~~~~~--~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~ 486 (1049)
...... -..+.++|.+.....+.+..||.+.+.....+...++. ..-++.+.+.+...+++..+.||...+..++.
T Consensus 386 l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti~~llp~~~~~l~de~~~V~lnli~~ls~ 463 (759)
T KOG0211|consen 386 LNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTISELLPLLIGNLKDEDPIVRLNLIDKLSL 463 (759)
T ss_pred cCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCccccChhhhhhcchhhHHHHHhhHHHHHH
Confidence 652111 12245688888889999999998877776666555542 12233455556666778889999999887765
Q ss_pred HHHHhh-hhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCCCchhhHH
Q 001584 487 VAAAAE-QAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREY 565 (1049)
Q Consensus 487 l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~ 565 (1049)
+-...+ .....+.+..+|.+..+.. +..++.|...++.+..++...|.+.|.+.+.++. ...+.+....+|+.
T Consensus 464 ~~~v~~v~g~~~~s~slLp~i~el~~---d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~---~~~l~d~v~~Ir~~ 537 (759)
T KOG0211|consen 464 LEEVNDVIGISTVSNSLLPAIVELAE---DLLWRVRLAILEYIPQLALQLGVEFFDEKLAELL---RTWLPDHVYSIREA 537 (759)
T ss_pred HHhccCcccchhhhhhhhhhhhhhcc---chhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHH---HhhhhhhHHHHHHH
Confidence 544433 2333455667777665442 2256788888899988888877555554433322 22233445679999
Q ss_pred HHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCchhhhccCCCCCCCcchhhcccccceeeeccchhhH
Q 001584 566 THGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEK 645 (1049)
Q Consensus 566 ~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k 645 (1049)
+...+..++..+|.. -+...++|.++.....+ ++ ..|
T Consensus 538 aa~~l~~l~~~~G~~--w~~~~~i~k~L~~~~q~----------------------------------~y-------~~R 574 (759)
T KOG0211|consen 538 AARNLPALVETFGSE--WARLEEIPKLLAMDLQD----------------------------------NY-------LVR 574 (759)
T ss_pred HHHHhHHHHHHhCcc--hhHHHhhHHHHHHhcCc----------------------------------cc-------chh
Confidence 999999999999933 23456666666543211 00 145
Q ss_pred HHHHHHHHHHHHHhhhhchhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHH
Q 001584 646 AAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIF 725 (1049)
Q Consensus 646 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 725 (1049)
...+.++..++..+|..+ +.+.++..+..+..+..++||..++..+..+..... ..... ..+-.+
T Consensus 575 ~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~---------~~~~~----~~v~pl 639 (759)
T KOG0211|consen 575 MTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLD---------ESVRD----EEVLPL 639 (759)
T ss_pred hHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcc---------hHHHH----HHHHHH
Confidence 566677778888777654 366777777888889999999999999998876543 11122 222233
Q ss_pred HHHhhhCChHHHHHHHHHHHHHH
Q 001584 726 IRTMTEDDDKDVVAQACTSIVEI 748 (1049)
Q Consensus 726 ~~~l~~~~~~~~~~~~~~~l~~~ 748 (1049)
+..+.++++.++...+..+.+.+
T Consensus 640 l~~L~~d~~~dvr~~a~~a~~~i 662 (759)
T KOG0211|consen 640 LETLSSDQELDVRYRAILAFGSI 662 (759)
T ss_pred HHHhccCcccchhHHHHHHHHHH
Confidence 33345566666665444444433
No 47
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.39 E-value=2.8e-09 Score=119.67 Aligned_cols=392 Identities=16% Similarity=0.222 Sum_probs=253.8
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhccc-ccHHHHH
Q 001584 83 LIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFR-PHFADMQ 161 (1049)
Q Consensus 83 ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~-~~~~~l~ 161 (1049)
++..|.+ .+......++.++..+.....+....+.+.+.+...+.++++.+|..++..++.+......... -.-+.++
T Consensus 43 lf~~L~~-~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~ 121 (503)
T PF10508_consen 43 LFDCLNT-SNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELL 121 (503)
T ss_pred HHHHHhh-cChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHH
Confidence 4455554 3444455667777777665444334566777788888888888888888877777654332111 1124578
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhh-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcc
Q 001584 162 ALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFI-PSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (1049)
Q Consensus 162 ~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (1049)
+.+..++.+ ++..|...|.+++..++..... ...++ +..+..+...+...+..++..+++++..++...+..
T Consensus 122 ~~i~~~L~~-~d~~Va~~A~~~L~~l~~~~~~------~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 122 PLIIQCLRD-PDLSVAKAAIKALKKLASHPEG------LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred HHHHHHHcC-CcHHHHHHHHHHHHHHhCCchh------HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 889999998 9999999999999999986421 11121 222455555566557778899999999998887766
Q ss_pred hhhhHH-HHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCCh--HHHHHHHhhhhccCCCCCCCCCCcHHH
Q 001584 241 LGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLV--IPILQVMCPLLAESNEAGEDDDLAPDR 317 (1049)
Q Consensus 241 ~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~--~~il~~l~~~l~~~~~~~~d~~~~~~~ 317 (1049)
+..... .+++.++..+.++ |.-+|..+++++..+++.... . .|+ ..+++.+..++.+..+|. ......-
T Consensus 195 ~~~~~~sgll~~ll~eL~~d--DiLvqlnalell~~La~~~~g-~---~yL~~~gi~~~L~~~l~~~~~dp--~~~~~~l 266 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSD--DILVQLNALELLSELAETPHG-L---QYLEQQGIFDKLSNLLQDSEEDP--RLSSLLL 266 (503)
T ss_pred HHHHHhccHHHHHHHHhcCc--cHHHHHHHHHHHHHHHcChhH-H---HHHHhCCHHHHHHHHHhccccCC--cccchhh
Confidence 544432 4677776666653 677899999999999974322 1 122 236777777777665432 1112221
Q ss_pred H-HHHHHHHHHHHcc---hhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcCh--HHH----HHhHHHHHHHHHhhc
Q 001584 318 A-AAEVIDTMALNLA---KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA--EWM----KEKLESVLHIVLGAL 387 (1049)
Q Consensus 318 ~-a~~~l~~l~~~~~---~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~--~~~----~~~l~~i~~~l~~~l 387 (1049)
. .....+.++..-+ ...+|.++..+.+.+.+.|...+.+|+.++|.++.... ..+ .+.+..++..+....
T Consensus 267 ~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~ 346 (503)
T PF10508_consen 267 PGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAI 346 (503)
T ss_pred hhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 1 2245566665433 34458888888888899999999999999999986432 122 223566777777777
Q ss_pred CCCChhHHHHHHHHHHHhHhhhcH----HH---H-hhh-----hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh-ccc
Q 001584 388 RDPEQFVRGAASFALGQFAEYLQP----EI---V-SHY-----ESVLPCILNALEDESDEVKEKSYYALAAFCEDM-GEE 453 (1049)
Q Consensus 388 ~d~~~~vr~~a~~~l~~l~~~~~~----~~---~-~~~-----~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~-~~~ 453 (1049)
......+|..++.+++.+.....+ ++ . .++ ......++..++.|-+++|.++...|..++..- +..
T Consensus 347 ~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~ 426 (503)
T PF10508_consen 347 KSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQR 426 (503)
T ss_pred cCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHH
Confidence 888888999999999999654432 11 1 111 111226677788888999999999999988653 211
Q ss_pred cccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHH
Q 001584 454 ILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAA 490 (1049)
Q Consensus 454 l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~ 490 (1049)
..--.+.+++.+++--...+...++.=..++..++..
T Consensus 427 ~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 427 EICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred HHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 1112345556555544445556666656666666543
No 48
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.9e-06 Score=94.44 Aligned_cols=427 Identities=16% Similarity=0.176 Sum_probs=234.9
Q ss_pred cHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCC-hhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcC-C--
Q 001584 314 APDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNAS-PKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-D-- 389 (1049)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~-~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-d-- 389 (1049)
.+|-.|++.++.++..++..+...++.-+.+.+.-.+ ...=++|+++|+.++..-- .....++.++|.+...+. |
T Consensus 356 ~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGl-Llps~l~dVvplI~kaL~Yd~~ 434 (1133)
T KOG1943|consen 356 VVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGL-LLPSLLEDVVPLILKALHYDVR 434 (1133)
T ss_pred hhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHhhhhhh
Confidence 5677889999999998885555555555544332211 2222399999999986411 112346788888888775 2
Q ss_pred -----CChhHHHHHHHHHHHhHhhhcH-HHHhhhhhHHHHHH-HhccCCChHHHHHHHHHHHHHHHhhc-----------
Q 001584 390 -----PEQFVRGAASFALGQFAEYLQP-EIVSHYESVLPCIL-NALEDESDEVKEKSYYALAAFCEDMG----------- 451 (1049)
Q Consensus 390 -----~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~ll~~l~-~~l~~~~~~v~~~a~~~l~~l~~~~~----------- 451 (1049)
....||.+|++..-.++....+ ++.+++..+.+.|+ .++-|++-.+|.+|..|+...+...+
T Consensus 435 ~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~ 514 (1133)
T KOG1943|consen 435 RGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLIST 514 (1133)
T ss_pred hcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhh
Confidence 2357999999998888887655 45677777777765 67889888899999999987664421
Q ss_pred --------------------cccccchHHHHHHHHHh-hcCCCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHH
Q 001584 452 --------------------EEILPFLDPLMGKLLAA-LENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFM 510 (1049)
Q Consensus 452 --------------------~~l~~~~~~ll~~l~~~-l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l 510 (1049)
..+..|...+++.+... +.+-+.++|+.+..++..+....++.+..|+ +.|++...+
T Consensus 515 ~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~--L~~lld~~l 592 (1133)
T KOG1943|consen 515 IDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYV--LPPLLDSTL 592 (1133)
T ss_pred cchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccc--hhhhhhhhc
Confidence 11223445555555544 5667889999999999998888777766442 222332222
Q ss_pred hccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCC---------CchhhHHHHHHHHHHHHHcccCc
Q 001584 511 VLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLE---------FSELREYTHGFFSNIAGVLEDGF 581 (1049)
Q Consensus 511 ~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~---------~~~~r~~~~~~l~~l~~~~~~~~ 581 (1049)
..+...|...+-+.+.+..+.. ...|....+-+.-+..+.+- .+...+-...+.....+.+...-
T Consensus 593 ----s~~~~~r~g~~la~~ev~~~~~--~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~ 666 (1133)
T KOG1943|consen 593 ----SKDASMRHGVFLAAGEVIGALR--KLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSK 666 (1133)
T ss_pred ----CCChHHhhhhHHHHHHHHHHhh--hhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhcc
Confidence 2233344444444555444332 12222222222211111100 01111122333333444333221
Q ss_pred cCchhh-h---hHHHHhhccCCCCCccCCCCCchhhhccCCCCCCCcchhhcccccceeeeccchhhHHHHHHHHHHHHH
Q 001584 582 AQYLPL-V---VPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFAL 657 (1049)
Q Consensus 582 ~~~l~~-i---~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~ 657 (1049)
.+..+. + ...++.. +.+..+ ..|..|.++++.+..
T Consensus 667 ~~~~~~~v~e~~~~ll~~--------------------------------------~l~~~n---~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 667 DRLFQDFVIENWQMLLAQ--------------------------------------NLTLPN---QIRDAAVSAVSDLVS 705 (1133)
T ss_pred chhHHHHHHHHHHHHHHH--------------------------------------hhcchH---HHHHHHHHHHHHHHH
Confidence 111111 1 1111110 000011 257788888888766
Q ss_pred HhhhhchhhHH-HHHHHHHhhhc-CCChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHhhhCChH
Q 001584 658 HTKSSYAPFLE-ESLKILVRHAS-YFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDK 735 (1049)
Q Consensus 658 ~~~~~~~~~~~-~~~~~l~~~~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 735 (1049)
..... .++.. .++...+..+. ..++.+|.....++..+-.... -..+-+.+...++....++..+
T Consensus 706 ~y~~~-d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i------------~~~~q~~lc~~~l~~~p~d~~a 772 (1133)
T KOG1943|consen 706 TYVKA-DEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELI------------HRHLQEKLCKLVLELLPSDAWA 772 (1133)
T ss_pred HHHhc-CchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhh------------chHHHHHHHHHHhccCcccccH
Confidence 54221 12222 35555554433 3466667655555544432211 0111222334444333333366
Q ss_pred HHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhHHHHHHHHhHHHHHHHHhC
Q 001584 736 DVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMG 815 (1049)
Q Consensus 736 ~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 815 (1049)
+.+...+.++..++..++.........++++.+++.|.+.....+ .+-...++++++..+..+...+.
T Consensus 773 ~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~r------------GDVGswVReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 773 EARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSR------------GDVGSWVREAAMKALSSLLDTLS 840 (1133)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccC------------ccHHHHHHHHHHHHHHhhhhhhc
Confidence 677777888888888777555566778888888888888764332 23455566666666666655544
No 49
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.34 E-value=7.5e-09 Score=117.11 Aligned_cols=526 Identities=17% Similarity=0.136 Sum_probs=313.4
Q ss_pred CCCHHHHHHHHHHHHHHhc---CCCcHHHHHHHH---hcCCChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHH
Q 001584 14 MPDNDARRQAEDQIKRLAK---DPQVVPALVQHL---RTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESI 87 (1049)
Q Consensus 14 s~d~~~r~~a~~~L~~~~~---~p~~~~~l~~il---~~~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l 87 (1049)
..+-++...+...+..+.. .|++...++..+ .......+|+-++-.+++....+-+ +........++..+
T Consensus 131 ~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~----~~~~~~lv~l~~~l 206 (759)
T KOG0211|consen 131 DDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLPK----EKLREHLVPLLKRL 206 (759)
T ss_pred cchhHHHHHHHHHhcccchhccchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCh----HHHHHHHHHHHHHc
Confidence 3344555555555554433 244433333322 2234456677777777766544422 22222222333333
Q ss_pred hhcCCHH-HHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHH
Q 001584 88 TLEHSAP-VRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLK 166 (1049)
Q Consensus 88 ~~e~~~~-vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~ 166 (1049)
... ++. -|..+|.+++..+....++..-.++.|...++.++..+.+|..+..-++.++...+. ......+.+.+.+
T Consensus 207 ~~~-d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~ 283 (759)
T KOG0211|consen 207 ATG-DWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQ 283 (759)
T ss_pred cch-hhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhh
Confidence 321 222 344555666665544332234567888888889888999999888888888877775 2334567788888
Q ss_pred hhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHH
Q 001584 167 CLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK 246 (1049)
Q Consensus 167 ~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 246 (1049)
...| ....||.+|..++..+..+..... .....+.+.++ +...+.+..++....+....+...-.+ ...-.
T Consensus 284 L~~D-dqdsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~----~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~ 354 (759)
T KOG0211|consen 284 LLRD-DQDSVREAAVESLVSLLDLLDDDD--DVVKSLTESLV----QAVEDGSWRVSYMVADKFSELSSAVGP--SATRT 354 (759)
T ss_pred hhhc-chhhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHH----HHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcc
Confidence 8888 778899999999999999886542 22233334444 445666666666666665555443222 11111
Q ss_pred HHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHH
Q 001584 247 SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTM 326 (1049)
Q Consensus 247 ~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l 326 (1049)
...+.....+++. ..+.|.....-...+..+.......+-....+++.+.....+... .++.+.+.....+
T Consensus 355 ~~~~~~~~l~~~~--~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~-------~vr~a~a~~~~~~ 425 (759)
T KOG0211|consen 355 QLVPPVSNLLKDE--EWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNAL-------HVRSALASVITGL 425 (759)
T ss_pred cchhhHHHHhcch--hhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccc-------hHHHHHhcccccc
Confidence 2223233333322 334444433222223222111111111222344444444444333 5666655555555
Q ss_pred HHHcc-hhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcC-hHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 001584 327 ALNLA-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC-AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQ 404 (1049)
Q Consensus 327 ~~~~~-~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~-~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~ 404 (1049)
...+| ....+.++|.....+++....+|......+..+-... ...+....+..+|.+...-.|.++++|.+..+.+-.
T Consensus 426 ~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~ 505 (759)
T KOG0211|consen 426 SPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQ 505 (759)
T ss_pred CccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHH
Confidence 55556 5566778888888888888889988776554333221 122334566788888888888999999999999988
Q ss_pred hHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHH
Q 001584 405 FAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAI 484 (1049)
Q Consensus 405 l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l 484 (1049)
++...+..+.. +.+-+.+...+.|....+|.+|...+..++..++ ..-+...+++.++....+++...|...+.++
T Consensus 506 la~q~~~~~~~--~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si 581 (759)
T KOG0211|consen 506 LALQLGVEFFD--EKLAELLRTWLPDHVYSIREAAARNLPALVETFG--SEWARLEEIPKLLAMDLQDNYLVRMTTLFSI 581 (759)
T ss_pred HHHhhhhHHhh--HHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC--cchhHHHhhHHHHHHhcCcccchhhHHHHHH
Confidence 88776632211 1244444566777778899999999999999988 2334556677777776666788999999999
Q ss_pred HHHHHHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCCCchhhH
Q 001584 485 GSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELRE 564 (1049)
Q Consensus 485 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~ 564 (1049)
..++...|..+ +...++|.+..+.. |+...+|-.+...+..+...+.......++.++...+. .+++.++|-
T Consensus 582 ~~la~v~g~ei--~~~~Llp~~~~l~~---D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~---~d~~~dvr~ 653 (759)
T KOG0211|consen 582 HELAEVLGQEI--TCEDLLPVFLDLVK---DPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLS---SDQELDVRY 653 (759)
T ss_pred HHHHHHhccHH--HHHHHhHHHHHhcc---CCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhc---cCcccchhH
Confidence 99999988765 44667777776553 33334666666666666655543333333333333332 255677887
Q ss_pred HHHHHHHHHHHH
Q 001584 565 YTHGFFSNIAGV 576 (1049)
Q Consensus 565 ~~~~~l~~l~~~ 576 (1049)
.+..+++.+...
T Consensus 654 ~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 654 RAILAFGSIELS 665 (759)
T ss_pred HHHHHHHHHHHH
Confidence 777777777654
No 50
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.29 E-value=7.2e-10 Score=107.48 Aligned_cols=350 Identities=14% Similarity=0.146 Sum_probs=228.0
Q ss_pred CCChhHHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCC---CcchHHH
Q 001584 47 AKTPNVRQLAAVLLRKKITG-HWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGE---WPDLLPF 122 (1049)
Q Consensus 47 ~~~~~~R~~a~~~l~~~i~~-~w~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~---w~~ll~~ 122 (1049)
+.+-+.+..|..-+|+.+++ .-+.+.+-+...+...+++.+..........-++-++..|++....... -..-+|.
T Consensus 82 SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPl 161 (526)
T COG5064 82 SDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPL 161 (526)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHH
Confidence 44667677777778888876 4556777777888889999996546677888999999999986643211 1346899
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHH--HHHHHHHHhhCCC-CChHHHHHHHHHHHHhhcccCChhhHHH
Q 001584 123 LFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFA--DMQALLLKCLQDE-TSNRVRIAALKAIGSFLEFTNDGAEVVK 199 (1049)
Q Consensus 123 l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 199 (1049)
+++++.+++.++|+.++.+|+.++...+.- ..++- ..+..+...+.++ .+...-..+-++|+++++-...++.+..
T Consensus 162 fiqlL~s~~~~V~eQavWALGNiAGDS~~~-RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~ 240 (526)
T COG5064 162 FIQLLSSTEDDVREQAVWALGNIAGDSEGC-RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSN 240 (526)
T ss_pred HHHHHcCchHHHHHHHHHHhccccCCchhH-HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHH
Confidence 999999999999999999999998654321 11211 1233444444441 2346667788999999988776666766
Q ss_pred HHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHHH-HHHHHHHhhhCCCCChHHHHHHHHHHHHHHh
Q 001584 200 FREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKS-IVHFSLEVSSSHNLEPNTRHQAIQIISWLAK 278 (1049)
Q Consensus 200 ~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~ 278 (1049)
....+|. +.+++-..++++...|++++.-+...........+.. +...+++++.++ +..+.
T Consensus 241 isqalpi----L~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~--sa~iq------------ 302 (526)
T COG5064 241 ISQALPI----LAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE--SAKIQ------------ 302 (526)
T ss_pred HHHHHHH----HHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc--ccccc------------
Confidence 6555554 4445667889999999999987766543322222110 011111222221 11111
Q ss_pred hhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHH
Q 001584 279 YKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAV 358 (1049)
Q Consensus 279 ~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al 358 (1049)
.+.+...-.+.+..+. ...+ .-. -..++.+...++++....|..+|
T Consensus 303 ------------tPalR~vGNIVTG~D~-----QTqv-----------iI~------~G~L~a~~~lLs~~ke~irKEaC 348 (526)
T COG5064 303 ------------TPALRSVGNIVTGSDD-----QTQV-----------IIN------CGALKAFRSLLSSPKENIRKEAC 348 (526)
T ss_pred ------------CHHHHhhcCeeecCcc-----ceeh-----------hee------cccHHHHHHHhcChhhhhhhhhh
Confidence 1122222222221111 0000 000 12334444457777778999999
Q ss_pred HHHHHHhhcChHHHHHhHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhc--HHHHhhh--hhHHHHHHHhccCCCh
Q 001584 359 TAIGIISEGCAEWMKEKLE-SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ--PEIVSHY--ESVLPCILNALEDESD 433 (1049)
Q Consensus 359 ~~l~~i~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~--~~ll~~l~~~l~~~~~ 433 (1049)
|.++.|..|..+.+...++ +++|.++..|..-+..+|..|||+++......- |++-.|+ +..+..|+..|.-.+.
T Consensus 349 WTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dN 428 (526)
T COG5064 349 WTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDN 428 (526)
T ss_pred eeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCc
Confidence 9999999998887776654 588999999998889999999999999877542 4444554 4567778888877666
Q ss_pred HHHHHHHHHHHHHHHh
Q 001584 434 EVKEKSYYALAAFCED 449 (1049)
Q Consensus 434 ~v~~~a~~~l~~l~~~ 449 (1049)
++-+.++.++.++++.
T Consensus 429 kiiev~LD~~eniLk~ 444 (526)
T COG5064 429 KIIEVALDAIENILKV 444 (526)
T ss_pred cchhhhHHHHHHHHhh
Confidence 7777788888888754
No 51
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.22 E-value=9.7e-11 Score=113.36 Aligned_cols=359 Identities=16% Similarity=0.172 Sum_probs=227.4
Q ss_pred hHHHHHHhccCCCHHHHHHHHHHHHHhhhhhh-hcccccH-HHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhh
Q 001584 119 LLPFLFQFSQSEQEEHREVALILFSSLTETIG-QTFRPHF-ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (1049)
Q Consensus 119 ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~-~~~~~~~-~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~ 196 (1049)
-+|.+.+.+.|.+.+....|..-|..+...-. +-+.+.+ ..++|-+...+......-.+..|.+++.+++.-......
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 34788888888887777778777777653311 1122222 234677777774435566788999999999875543211
Q ss_pred HHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHH-HHHHHHHHhhhCCCCChHHHHHHHHHHHH
Q 001584 197 VVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISW 275 (1049)
Q Consensus 197 ~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~ 275 (1049)
...-..-+|.+++. +.+++.+++..+.++|.+++...+..-+-.+. ..++.++.++.....+-.+-+.+...++.
T Consensus 152 vVvd~~AVPlfiql----L~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN 227 (526)
T COG5064 152 VVVDAGAVPLFIQL----LSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN 227 (526)
T ss_pred EEEeCCchHHHHHH----HcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence 11113456777765 56778899999999999998766543322222 23444455554443344556667777777
Q ss_pred HHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc---hhch-HHHHHHHHhhhcCCCh
Q 001584 276 LAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA---KHVF-PPVFEFASVSCQNASP 351 (1049)
Q Consensus 276 l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~---~~~~-~~ll~~l~~~l~~~~~ 351 (1049)
++..+... -...-+.+.++.+..++-..+. ++-..|..++..++..-. ..++ ..+.+.+.+++.+++.
T Consensus 228 lcRGknP~-P~w~~isqalpiL~KLiys~D~-------evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa 299 (526)
T COG5064 228 LCRGKNPP-PDWSNISQALPILAKLIYSRDP-------EVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESA 299 (526)
T ss_pred hhCCCCCC-CchHHHHHHHHHHHHHHhhcCH-------HHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccc
Confidence 77532100 0111334566666666654443 456667788887775433 1222 2345567788888888
Q ss_pred hHHhHHHHHHHHHhhcChHHHHHhH-HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHHHHhcc
Q 001584 352 KYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALE 429 (1049)
Q Consensus 352 ~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l~ 429 (1049)
+...-++..+|.|..|....-.-.+ -..++.+...|++|...+|..|||+++.+...-.+.++..+ ..++|.|+..|.
T Consensus 300 ~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls 379 (526)
T COG5064 300 KIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLS 379 (526)
T ss_pred cccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHH
Confidence 8888999999999887543211111 13456667778899999999999999999876655554433 468999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhc--cccccch--HHHHHHHHHhhcCCCHhHHHHHHHHHHHHHH
Q 001584 430 DESDEVKEKSYYALAAFCEDMG--EEILPFL--DPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (1049)
Q Consensus 430 ~~~~~v~~~a~~~l~~l~~~~~--~~l~~~~--~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~ 489 (1049)
..+-.++..||+++.+.....- .++..|+ ...+..|..++...+.++-+.++.++..+..
T Consensus 380 ~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 380 SAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred HHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 8888899999999998876542 1222232 1344555566665555565666666665544
No 52
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.22 E-value=4.8e-08 Score=109.78 Aligned_cols=312 Identities=19% Similarity=0.245 Sum_probs=201.2
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHH
Q 001584 122 FLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFR 201 (1049)
Q Consensus 122 ~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 201 (1049)
.++.++++.+.+....++.++..+...... ....+++.+.+..+|.+ +++.||..+++.+.+++...........-.
T Consensus 42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~--~~l~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 42 VLFDCLNTSNREQVELICDILKRLLSALSP--DSLLPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 377888777766667777888888765432 22378889999999998 999999999999998886542211111112
Q ss_pred hhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHH-HHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhh
Q 001584 202 EFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYK 280 (1049)
Q Consensus 202 ~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~ 280 (1049)
++++. +..++.+++..+...|.++|..++.+... +...++ .++..+...+... ++.+|..+++++..+++.+
T Consensus 119 ~l~~~----i~~~L~~~d~~Va~~A~~~L~~l~~~~~~-~~~l~~~~~~~~L~~l~~~~--~~~vR~Rv~el~v~i~~~S 191 (503)
T PF10508_consen 119 ELLPL----IIQCLRDPDLSVAKAAIKALKKLASHPEG-LEQLFDSNLLSKLKSLMSQS--SDIVRCRVYELLVEIASHS 191 (503)
T ss_pred cHHHH----HHHHHcCCcHHHHHHHHHHHHHHhCCchh-HHHHhCcchHHHHHHHHhcc--CHHHHHHHHHHHHHHHhcC
Confidence 34444 44467888999999999999999976433 222211 1244444444443 5788999999999998776
Q ss_pred HhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc-hhch--HHHHHHHHhhhcCC--Ch---h
Q 001584 281 YNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-KHVF--PPVFEFASVSCQNA--SP---K 352 (1049)
Q Consensus 281 ~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~-~~~~--~~ll~~l~~~l~~~--~~---~ 352 (1049)
+...... .-..+++.++..+.. +|.-++..+.+.+..++..-. -.++ ..+++.+.+.+.+. ++ .
T Consensus 192 ~~~~~~~-~~sgll~~ll~eL~~-------dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~ 263 (503)
T PF10508_consen 192 PEAAEAV-VNSGLLDLLLKELDS-------DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSS 263 (503)
T ss_pred HHHHHHH-HhccHHHHHHHHhcC-------ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccc
Confidence 6543211 001245555544443 223567788899998887322 1111 22444444444332 22 1
Q ss_pred -HHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHH--H----HhhhhhHHHHHH
Q 001584 353 -YREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE--I----VSHYESVLPCIL 425 (1049)
Q Consensus 353 -~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~----~~~~~~ll~~l~ 425 (1049)
.--+.+..+|.++...+..+....+.++..+...+.+.++..+..|+.++|.++...... + .+.+..++..+.
T Consensus 264 ~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~ 343 (503)
T PF10508_consen 264 LLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIG 343 (503)
T ss_pred hhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHH
Confidence 112333455666665555555666788888888888899999999999999998765321 1 123345666666
Q ss_pred HhccCCChHHHHHHHHHHHHHHHhhc
Q 001584 426 NALEDESDEVKEKSYYALAAFCEDMG 451 (1049)
Q Consensus 426 ~~l~~~~~~v~~~a~~~l~~l~~~~~ 451 (1049)
.........+|.+++.++..++....
T Consensus 344 ~~~~~~~~~lk~r~l~al~~il~~~~ 369 (503)
T PF10508_consen 344 DAIKSGSTELKLRALHALASILTSGT 369 (503)
T ss_pred HHhcCCchHHHHHHHHHHHHHHhcCC
Confidence 66777777899999999999976543
No 53
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=8.5e-08 Score=104.04 Aligned_cols=435 Identities=11% Similarity=0.133 Sum_probs=267.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHH-hcCCCcH----HHHHHHHhcCCChhHHHHHHHHHHHhhhhhccCCCHHHHHHH
Q 001584 5 LELLLIQFLMPDNDARRQAEDQIKRL-AKDPQVV----PALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLV 79 (1049)
Q Consensus 5 l~~ll~~~~s~d~~~r~~a~~~L~~~-~~~p~~~----~~l~~il~~~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i 79 (1049)
+.+++.+..+.|.+++|=.--.|-++ +.+|+.. ..+-.-| .++++-+|-.|...|... --....-|
T Consensus 73 Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L-~DpN~LiRasALRvlSsI--------Rvp~IaPI 143 (968)
T KOG1060|consen 73 FPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKAL-KDPNQLIRASALRVLSSI--------RVPMIAPI 143 (968)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhh-cCCcHHHHHHHHHHHHhc--------chhhHHHH
Confidence 55677777777777877777777554 4566542 2222222 366777777775444322 11222223
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHH
Q 001584 80 KQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFAD 159 (1049)
Q Consensus 80 ~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~ 159 (1049)
.-.-++-...++.+.||+.+|++|-.+.+.+. .+.+++...+-.++.+.++-+...|+.+|..++...-+.+.+++..
T Consensus 144 ~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~--e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrk 221 (968)
T KOG1060|consen 144 MLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP--EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRK 221 (968)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh--hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHH
Confidence 32333334457999999999999999988653 3566888999999999999999999999999987766666666665
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHHHhhccc-CChhh--------------------HH---HHHhhhHHHHHHHHHHh
Q 001584 160 MQALLLKCLQDETSNRVRIAALKAIGSFLEFT-NDGAE--------------------VV---KFREFIPSILNVSRQCL 215 (1049)
Q Consensus 160 l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~-~~~~~--------------------~~---~~~~~~~~ll~~l~~~l 215 (1049)
+..++... .+| -+...+..|.++++.. .++.. .. ....-+..+++.+..++
T Consensus 222 lC~ll~dv----deW-gQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl 296 (968)
T KOG1060|consen 222 LCRLLPDV----DEW-GQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLL 296 (968)
T ss_pred HHhhccch----hhh-hHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHH
Confidence 55444322 112 2233444554444321 00000 00 01223456777777788
Q ss_pred hcCCHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHH
Q 001584 216 ASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQ 295 (1049)
Q Consensus 216 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~ 295 (1049)
.+.++.+...++..+..++-.. ....++..++..+.. ..+++...+..+.+++...|..+.. +++.+
T Consensus 297 ~S~n~sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs---~~~vqyvvL~nIa~~s~~~~~lF~P--~lKsF-- 363 (968)
T KOG1060|consen 297 QSRNPSVVMAVAQLFYHLAPKN------QVTKIAKALVRLLRS---NREVQYVVLQNIATISIKRPTLFEP--HLKSF-- 363 (968)
T ss_pred hcCCcHHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhc---CCcchhhhHHHHHHHHhcchhhhhh--hhhce--
Confidence 8899999999888888766432 223334444444432 3567777888888887665554432 22111
Q ss_pred HHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHh
Q 001584 296 VMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEK 375 (1049)
Q Consensus 296 ~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~ 375 (1049)
+ ....+ -......-.+.|..++. +.-...++.-++.++++.+-..-.+++.++|..+.... ..
T Consensus 364 --f---v~ssD-----p~~vk~lKleiLs~La~---esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~----sv 426 (968)
T KOG1060|consen 364 --F---VRSSD-----PTQVKILKLEILSNLAN---ESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG----SV 426 (968)
T ss_pred --E---eecCC-----HHHHHHHHHHHHHHHhh---hccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC----ch
Confidence 1 11111 00112222334444443 44456677777788888776666667777877776433 23
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCC-ChHHHHHHHHHHHHHHHhhcccc
Q 001584 376 LESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE-SDEVKEKSYYALAAFCEDMGEEI 454 (1049)
Q Consensus 376 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~~~~l 454 (1049)
-+..+..++..++..+..|-..+...+..+...-+....+ ++..+.+.+..- -+.-|...+|.++..++..
T Consensus 427 ~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~----ii~~La~lldti~vp~ARA~IiWLige~~e~v---- 498 (968)
T KOG1060|consen 427 TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLE----ILFQLARLLDTILVPAARAGIIWLIGEYCEIV---- 498 (968)
T ss_pred hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHH----HHHHHHHHhhhhhhhhhhceeeeeehhhhhhc----
Confidence 3466777777787778888888888998888775543322 444444444332 2455666778888777663
Q ss_pred ccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhh
Q 001584 455 LPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ 493 (1049)
Q Consensus 455 ~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~ 493 (1049)
....++++..+.+.+.+....++.+++.....+-....+
T Consensus 499 pri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~ 537 (968)
T KOG1060|consen 499 PRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNID 537 (968)
T ss_pred chhchHHHHHHHHhhccccchhhHHHHHhhhhheEechh
Confidence 346788999999999999999999999877766444333
No 54
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.19 E-value=5.1e-09 Score=126.85 Aligned_cols=273 Identities=19% Similarity=0.186 Sum_probs=190.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHH
Q 001584 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADM 160 (1049)
Q Consensus 81 ~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l 160 (1049)
+.|++.|. ++++.||+.++..++.+.. ++.++.|.+.+.++++.+|..++..|..+.+..+.
T Consensus 624 ~~L~~~L~-D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--------- 685 (897)
T PRK13800 624 AELAPYLA-DPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--------- 685 (897)
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc---------
Confidence 45666666 5899999999999887642 44788889999999999999999998887543321
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcc
Q 001584 161 QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (1049)
Q Consensus 161 ~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (1049)
.+.+...|.+ +++.||..|+.+|..+-.. + . ..+ ...+.++++.++..++..|..+-. +
T Consensus 686 ~~~L~~~L~~-~d~~VR~~A~~aL~~~~~~--~------~----~~l----~~~L~D~d~~VR~~Av~aL~~~~~--~-- 744 (897)
T PRK13800 686 APALRDHLGS-PDPVVRAAALDVLRALRAG--D------A----ALF----AAALGDPDHRVRIEAVRALVSVDD--V-- 744 (897)
T ss_pred hHHHHHHhcC-CCHHHHHHHHHHHHhhccC--C------H----HHH----HHHhcCCCHHHHHHHHHHHhcccC--c--
Confidence 1345566777 8899999999988775311 1 0 112 235678899999999888886421 1
Q ss_pred hhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHH
Q 001584 241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAA 320 (1049)
Q Consensus 241 ~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~ 320 (1049)
+.+...+.++ +..+|..+...|..+....+ ..++.+..++.+. ++.+|..|.
T Consensus 745 ---------~~l~~~l~D~--~~~VR~~aa~aL~~~~~~~~----------~~~~~L~~ll~D~-------d~~VR~aA~ 796 (897)
T PRK13800 745 ---------ESVAGAATDE--NREVRIAVAKGLATLGAGGA----------PAGDAVRALTGDP-------DPLVRAAAL 796 (897)
T ss_pred ---------HHHHHHhcCC--CHHHHHHHHHHHHHhccccc----------hhHHHHHHHhcCC-------CHHHHHHHH
Confidence 1122334444 78999999888877753211 1133344444432 247788888
Q ss_pred HHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHH
Q 001584 321 EVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASF 400 (1049)
Q Consensus 321 ~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~ 400 (1049)
..|..+.. . +.+.+.+...+.+++|.+|.+|+.+|+.+... ..++.+...++|+++.||..|.+
T Consensus 797 ~aLg~~g~---~---~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~----------~a~~~L~~~L~D~~~~VR~~A~~ 860 (897)
T PRK13800 797 AALAELGC---P---PDDVAAATAALRASAWQVRQGAARALAGAAAD----------VAVPALVEALTDPHLDVRKAAVL 860 (897)
T ss_pred HHHHhcCC---c---chhHHHHHHHhcCCChHHHHHHHHHHHhcccc----------chHHHHHHHhcCCCHHHHHHHHH
Confidence 77765532 1 12234456678889999999999999876431 34578888899999999999999
Q ss_pred HHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHH
Q 001584 401 ALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAA 445 (1049)
Q Consensus 401 ~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~ 445 (1049)
+|+.+. .. +...+.|...++|+++.||..|..+|..
T Consensus 861 aL~~~~--~~-------~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 861 ALTRWP--GD-------PAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHhccC--CC-------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 999861 11 1256677788899999999999998863
No 55
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=4.5e-07 Score=98.63 Aligned_cols=463 Identities=12% Similarity=0.124 Sum_probs=276.2
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHH-H
Q 001584 83 LIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADM-Q 161 (1049)
Q Consensus 83 ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l-~ 161 (1049)
|.+.|.+..+...+.+.-.+++.|++.. .-..++|.+.....+.+.+++.....-|-..++.-++ +.-+ +
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~G~----dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpd-----LALLSI 110 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAKGK----DVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPD-----LALLSI 110 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhcCC----cHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCC-----ceeeeH
Confidence 4455667677888888888999999764 4678999999999999998887654433333333332 1111 5
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcch
Q 001584 162 ALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLL 241 (1049)
Q Consensus 162 ~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 241 (1049)
..+.+.|.| +++.+|..|++.|+.+- ...+.|.++-++.++..+..+-+|+.|..++-.+....+..-
T Consensus 111 ntfQk~L~D-pN~LiRasALRvlSsIR-----------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 111 NTFQKALKD-PNQLIRASALRVLSSIR-----------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred HHHHhhhcC-CcHHHHHHHHHHHHhcc-----------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 678899999 99999999999986542 233458888899999988888899999999998887766643
Q ss_pred hhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhh--------Hhhhhhc----CChHH-HHHHHhhhh----ccC
Q 001584 242 GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYK--------YNSLKKH----KLVIP-ILQVMCPLL----AES 304 (1049)
Q Consensus 242 ~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~--------~~~~~~~----~~~~~-il~~l~~~l----~~~ 304 (1049)
. .+.+++..++ .+. ++.+-..|+-.+..++-.. .+.++-- .|-+. ++..+..+- .++
T Consensus 179 ~-qL~e~I~~LL---aD~--splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P 252 (968)
T KOG1060|consen 179 D-QLEEVIKKLL---ADR--SPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDP 252 (968)
T ss_pred H-HHHHHHHHHh---cCC--CCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCc
Confidence 3 4445555443 333 5556555555554443211 1111100 01111 122222221 111
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHH-HHcc---hhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHH
Q 001584 305 NEAGEDDDLAPDRAAAEVIDTMA-LNLA---KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVL 380 (1049)
Q Consensus 305 ~~~~~d~~~~~~~~a~~~l~~l~-~~~~---~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~ 380 (1049)
...+++-+.+.+..- .-+... ...| ..-...+++....++.+.++.+-.|++.++..++-. .....|+
T Consensus 253 ~~~~~~~e~n~~~~~--~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~------~~~~~i~ 324 (968)
T KOG1060|consen 253 TVVDSSLEDNGRSCN--LKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPK------NQVTKIA 324 (968)
T ss_pred cccccccccCccccc--ccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCH------HHHHHHH
Confidence 100000000000000 000000 0011 222345666666777888888777777777666642 1344567
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHh------------------------------hhhhHHHHHHHhccC
Q 001584 381 HIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS------------------------------HYESVLPCILNALED 430 (1049)
Q Consensus 381 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~------------------------------~~~~ll~~l~~~l~~ 430 (1049)
..++..|.. ++.+|+..+..+..++...+.-|.+ ....+++.+..++.+
T Consensus 325 kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s 403 (968)
T KOG1060|consen 325 KALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKS 403 (968)
T ss_pred HHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhc
Confidence 777776654 4567777777777766544322221 235667777777777
Q ss_pred CChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHH
Q 001584 431 ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFM 510 (1049)
Q Consensus 431 ~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l 510 (1049)
.+.++...++.+++..+.... ..-+..+..|+.++.+.+..|-..+...|-.+...-+..-..++.++...+..+.
T Consensus 404 ~d~~faa~aV~AiGrCA~~~~----sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldti~ 479 (968)
T KOG1060|consen 404 SDRSFAAAAVKAIGRCASRIG----SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDTIL 479 (968)
T ss_pred CchhHHHHHHHHHHHHHHhhC----chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhhhh
Confidence 776777888888888776543 3556788888889988888888888888888887765443334444333332211
Q ss_pred hccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhH
Q 001584 511 VLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVP 590 (1049)
Q Consensus 511 ~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i~~ 590 (1049)
. -.-|+..+-.+|..+.. ....++.++..+.+.+.++...++-.++..-.++-..-.++ ...+..
T Consensus 480 ----v--p~ARA~IiWLige~~e~-----vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~----~kll~~ 544 (968)
T KOG1060|consen 480 ----V--PAARAGIIWLIGEYCEI-----VPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ----TKLLVQ 544 (968)
T ss_pred ----h--hhhhceeeeeehhhhhh-----cchhchHHHHHHHHhhccccchhhHHHHHhhhhheEechhh----HHHHHH
Confidence 1 12344444555555533 33456677888888888888888876666555544332233 455666
Q ss_pred HHHhhccCCC
Q 001584 591 LAFSSCNLDD 600 (1049)
Q Consensus 591 ~ll~~~~~~~ 600 (1049)
..++..+++.
T Consensus 545 Yv~~L~~yD~ 554 (968)
T KOG1060|consen 545 YVFELARYDL 554 (968)
T ss_pred HHHHHhccCC
Confidence 6776666554
No 56
>PRK09687 putative lyase; Provisional
Probab=99.18 E-value=8.9e-09 Score=105.23 Aligned_cols=253 Identities=18% Similarity=0.247 Sum_probs=173.9
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcC
Q 001584 209 NVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHK 288 (1049)
Q Consensus 209 ~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~ 288 (1049)
+.+...+.+.+..++..+...|..+-. +.++..+...+.++ ++.+|..++..++.+.....
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~--d~~vR~~A~~aLg~lg~~~~------- 86 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSK--NPIERDIGADILSQLGMAKR------- 86 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCC--CHHHHHHHHHHHHhcCCCcc-------
Confidence 334445677888899999888876542 12333333444444 78999999999988753210
Q ss_pred ChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcC
Q 001584 289 LVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC 368 (1049)
Q Consensus 289 ~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~ 368 (1049)
.....++.+..++.+ |.++.+|..+..+|+.+.... ....+.+++.+...+.+++|.+|.++..+|+.+..
T Consensus 87 ~~~~a~~~L~~l~~~------D~d~~VR~~A~~aLG~~~~~~-~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-- 157 (280)
T PRK09687 87 CQDNVFNILNNLALE------DKSACVRASAINATGHRCKKN-PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-- 157 (280)
T ss_pred chHHHHHHHHHHHhc------CCCHHHHHHHHHHHhcccccc-cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--
Confidence 012344555544322 223478889888888774321 12235566667777888999999999999987643
Q ss_pred hHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 001584 369 AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCE 448 (1049)
Q Consensus 369 ~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~ 448 (1049)
+..++.++..++|+++.||..|..+||.+... -+...+.|+..+.|.++.||..|..+|+.+-
T Consensus 158 --------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~- 220 (280)
T PRK09687 158 --------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--------NPDIREAFVAMLQDKNEEIRIEAIIGLALRK- 220 (280)
T ss_pred --------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHhcCCChHHHHHHHHHHHccC-
Confidence 25678899999999999999999999988322 1247788899999999999999999998741
Q ss_pred hhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHH
Q 001584 449 DMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELL 528 (1049)
Q Consensus 449 ~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l 528 (1049)
+ +..++.|++.+++++ ++..++.++|.+.. +..+|.|.+++....| ..++.++++.+
T Consensus 221 ---~------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~----------~~a~p~L~~l~~~~~d--~~v~~~a~~a~ 277 (280)
T PRK09687 221 ---D------KRVLSVLIKELKKGT--VGDLIIEAAGELGD----------KTLLPVLDTLLYKFDD--NEIITKAIDKL 277 (280)
T ss_pred ---C------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC----------HhHHHHHHHHHhhCCC--hhHHHHHHHHH
Confidence 1 356677777777655 67778888776643 3577888888864433 34556666665
Q ss_pred H
Q 001584 529 G 529 (1049)
Q Consensus 529 ~ 529 (1049)
.
T Consensus 278 ~ 278 (280)
T PRK09687 278 K 278 (280)
T ss_pred h
Confidence 4
No 57
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.17 E-value=8.1e-09 Score=125.12 Aligned_cols=274 Identities=19% Similarity=0.223 Sum_probs=190.0
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHH
Q 001584 120 LPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVK 199 (1049)
Q Consensus 120 l~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 199 (1049)
++.|.+.+.++++.+|..++..|+.+- -+..++.|...|.| +++.||..|+.+|..+....+..
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D-~d~~VR~~Aa~aL~~l~~~~~~~----- 686 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGD-GAAAVRRAAAEGLRELVEVLPPA----- 686 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhccCch-----
Confidence 467778888899999999988888763 14456777788888 88999999999988775543211
Q ss_pred HHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhh
Q 001584 200 FREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKY 279 (1049)
Q Consensus 200 ~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~ 279 (1049)
+.+. ..+.++++.++..+++.|..+-... .. .++..+.++ +..+|..|+..+..+...
T Consensus 687 -----~~L~----~~L~~~d~~VR~~A~~aL~~~~~~~-------~~----~l~~~L~D~--d~~VR~~Av~aL~~~~~~ 744 (897)
T PRK13800 687 -----PALR----DHLGSPDPVVRAAALDVLRALRAGD-------AA----LFAAALGDP--DHRVRIEAVRALVSVDDV 744 (897)
T ss_pred -----HHHH----HHhcCCCHHHHHHHHHHHHhhccCC-------HH----HHHHHhcCC--CHHHHHHHHHHHhcccCc
Confidence 2222 2355678888888888887753211 11 122334444 788998888877654210
Q ss_pred hHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHH
Q 001584 280 KYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVT 359 (1049)
Q Consensus 280 ~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~ 359 (1049)
+.+...+.+ ++..+|..+...|..+...-+ ..++.+...++++++.+|.+|+.
T Consensus 745 ---------------~~l~~~l~D-------~~~~VR~~aa~aL~~~~~~~~-----~~~~~L~~ll~D~d~~VR~aA~~ 797 (897)
T PRK13800 745 ---------------ESVAGAATD-------ENREVRIAVAKGLATLGAGGA-----PAGDAVRALTGDPDPLVRAAALA 797 (897)
T ss_pred ---------------HHHHHHhcC-------CCHHHHHHHHHHHHHhccccc-----hhHHHHHHHhcCCCHHHHHHHHH
Confidence 112223322 234788888888877654221 12455556788899999999999
Q ss_pred HHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHH
Q 001584 360 AIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKS 439 (1049)
Q Consensus 360 ~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a 439 (1049)
+|+.+... ..+.+.+...+.|+++.||.+|.++|+.+.. +..++.|...|.|+++.||..|
T Consensus 798 aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~A 858 (897)
T PRK13800 798 ALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKAA 858 (897)
T ss_pred HHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHHH
Confidence 99888542 1233557778899999999999999987642 1255788888999999999999
Q ss_pred HHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHH
Q 001584 440 YYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGS 486 (1049)
Q Consensus 440 ~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~ 486 (1049)
..+|..+ +--+...+.|...+++.+..||..+..+|..
T Consensus 859 ~~aL~~~---------~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 859 VLALTRW---------PGDPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHhcc---------CCCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999885 1123456677788889999999999988763
No 58
>PRK09687 putative lyase; Provisional
Probab=99.17 E-value=1.3e-08 Score=104.16 Aligned_cols=253 Identities=13% Similarity=0.083 Sum_probs=172.7
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcc
Q 001584 161 QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (1049)
Q Consensus 161 ~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (1049)
.+.+...|.+ ++..||..|..+|..+-. +.++..+..++.++++.++..+.+.|..+......
T Consensus 25 ~~~L~~~L~d-~d~~vR~~A~~aL~~~~~---------------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~- 87 (280)
T PRK09687 25 DDELFRLLDD-HNSLKRISSIRVLQLRGG---------------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC- 87 (280)
T ss_pred HHHHHHHHhC-CCHHHHHHHHHHHHhcCc---------------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-
Confidence 3456677788 899999999999864421 12223333346778999999999999997643221
Q ss_pred hhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHH
Q 001584 241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAA 320 (1049)
Q Consensus 241 ~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~ 320 (1049)
....++.+...+. .+.++.+|..++..++.+..... ......+..+...+.+. ++.+|..+.
T Consensus 88 ----~~~a~~~L~~l~~-~D~d~~VR~~A~~aLG~~~~~~~------~~~~~a~~~l~~~~~D~-------~~~VR~~a~ 149 (280)
T PRK09687 88 ----QDNVFNILNNLAL-EDKSACVRASAINATGHRCKKNP------LYSPKIVEQSQITAFDK-------STNVRFAVA 149 (280)
T ss_pred ----hHHHHHHHHHHHh-cCCCHHHHHHHHHHHhccccccc------ccchHHHHHHHHHhhCC-------CHHHHHHHH
Confidence 2233344433322 23378999999999988753211 12223344333333332 457888888
Q ss_pred HHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHH
Q 001584 321 EVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASF 400 (1049)
Q Consensus 321 ~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~ 400 (1049)
.+|+.+. -+..++.+...+.+++|.+|..|..+||.+..+ -+...+.+...+.|+++.||..|.+
T Consensus 150 ~aLg~~~-------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L~D~~~~VR~~A~~ 214 (280)
T PRK09687 150 FALSVIN-------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--------NPDIREAFVAMLQDKNEEIRIEAII 214 (280)
T ss_pred HHHhccC-------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHhcCCChHHHHHHHH
Confidence 8875432 134556666678899999999999999998332 2356778888899999999999999
Q ss_pred HHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhc-CCCHhHHHH
Q 001584 401 ALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALE-NSPRNLQET 479 (1049)
Q Consensus 401 ~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~-~~~~~v~~~ 479 (1049)
+|+.+... ..+|.|++.++++. ++..++.+|+.+-. +..++.|.++++ +++..++..
T Consensus 215 aLg~~~~~----------~av~~Li~~L~~~~--~~~~a~~ALg~ig~----------~~a~p~L~~l~~~~~d~~v~~~ 272 (280)
T PRK09687 215 GLALRKDK----------RVLSVLIKELKKGT--VGDLIIEAAGELGD----------KTLLPVLDTLLYKFDDNEIITK 272 (280)
T ss_pred HHHccCCh----------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC----------HhHHHHHHHHHhhCCChhHHHH
Confidence 99986432 48899999999875 67778888877532 255666777765 678889888
Q ss_pred HHHHHH
Q 001584 480 CMSAIG 485 (1049)
Q Consensus 480 ~~~~l~ 485 (1049)
+.+++.
T Consensus 273 a~~a~~ 278 (280)
T PRK09687 273 AIDKLK 278 (280)
T ss_pred HHHHHh
Confidence 888765
No 59
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.13 E-value=7.2e-10 Score=91.15 Aligned_cols=94 Identities=18% Similarity=0.277 Sum_probs=87.0
Q ss_pred HHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCC
Q 001584 353 YREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES 432 (1049)
Q Consensus 353 ~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~ 432 (1049)
.|.+++.+|+.++.+.+..+.++++.|++.++.++.|++++||+.|+.+|.++++..+..+.++++++++.+.+.+.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 58999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 001584 433 DEVKEKSYYALAAFC 447 (1049)
Q Consensus 433 ~~v~~~a~~~l~~l~ 447 (1049)
++||..| ..|.+++
T Consensus 82 ~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 82 ENVRSAA-ELLDRLL 95 (97)
T ss_pred hhHHHHH-HHHHHHh
Confidence 9999766 5555544
No 60
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=99.05 E-value=4.1e-07 Score=100.30 Aligned_cols=378 Identities=15% Similarity=0.166 Sum_probs=235.3
Q ss_pred HHHHHhccCCCH---HHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChh--
Q 001584 121 PFLFQFSQSEQE---EHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA-- 195 (1049)
Q Consensus 121 ~~l~~~l~~~~~---~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~-- 195 (1049)
|.++..+.+.+. ...+..+.++..++.... .+......++..+........+...-..++.++..++.......
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~-i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~ 80 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQ-ILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQF 80 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChh-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccccc
Confidence 556666655443 345566666666653322 22333445555555555543466677778888888776553322
Q ss_pred -hHHHHHh--hhHHHHHHHHHHhhcCC---HHHHHHHHHHHHHHhccCCcch-hhhHHHHHHHHHHh-----hh-CCCCC
Q 001584 196 -EVVKFRE--FIPSILNVSRQCLASGE---EDVAVIAFEIFDELIESPAPLL-GDSVKSIVHFSLEV-----SS-SHNLE 262 (1049)
Q Consensus 196 -~~~~~~~--~~~~ll~~l~~~l~~~~---~~~~~~~~~~l~~l~~~~~~~~-~~~~~~l~~~l~~~-----~~-~~~~~ 262 (1049)
....+.+ ++|.++.........+. +.....+...+..+....+.-- ...+..+...++.. +. .....
T Consensus 81 ~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~ 160 (415)
T PF12460_consen 81 EDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTI 160 (415)
T ss_pred chHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCcccccc
Confidence 2222222 77878777655543322 3444444455554444433211 22233333333300 00 00000
Q ss_pred hHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc-hhchHHHHHH
Q 001584 263 PNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-KHVFPPVFEF 341 (1049)
Q Consensus 263 ~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~-~~~~~~ll~~ 341 (1049)
.......+.++..+...-+..+.- +....+++.++.+.....+ ...+..+.+++..+....+ .+.+..++..
T Consensus 161 ~~~~~~~~~l~~~il~~l~~~~~~-~~~~~ll~~l~~~~~~~~~------~~~~~~~~~~la~LvNK~~~~~~l~~~l~~ 233 (415)
T PF12460_consen 161 SEQQSRLVILFSAILCSLRKDVSL-PDLEELLQSLLNLALSSED------EFSRLAALQLLASLVNKWPDDDDLDEFLDS 233 (415)
T ss_pred ccccccHHHHHHHHHHcCCcccCc-cCHHHHHHHHHHHHHcCCC------hHHHHHHHHHHHHHHcCCCChhhHHHHHHH
Confidence 112223333333333221211111 1334466666666554432 2678889999999999876 4455566665
Q ss_pred HHhhh-cCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHH--------
Q 001584 342 ASVSC-QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE-------- 412 (1049)
Q Consensus 342 l~~~l-~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-------- 412 (1049)
..... ...+...|..++..+..+.++.--...+....++..++..+.| +.+...+.++++-+....+.-
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~ 311 (415)
T PF12460_consen 234 LLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHAN 311 (415)
T ss_pred HHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccch
Confidence 55545 4455677888888888888763211123455677778888877 567888888888887763221
Q ss_pred -----HHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccc-cccchHHHHHHHHHhhcCCCHhHHHHHHHHHHH
Q 001584 413 -----IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE-ILPFLDPLMGKLLAALENSPRNLQETCMSAIGS 486 (1049)
Q Consensus 413 -----~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~-l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~ 486 (1049)
-++.+..++|.+++...+.+...+.....||..+++..|.. +.++++.+++.+++.++.++..++..+++++..
T Consensus 312 vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~ 391 (415)
T PF12460_consen 312 VKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKM 391 (415)
T ss_pred hhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 14567899999999999887778999999999999999765 569999999999999999999999999999999
Q ss_pred HHHHhhhhccccHHHHHHHHHH
Q 001584 487 VAAAAEQAFIPYAERVLELLKI 508 (1049)
Q Consensus 487 l~~~~~~~~~~~~~~~~~~l~~ 508 (1049)
+....++.+.+|++.++|.+.+
T Consensus 392 ~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 392 ILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh
Confidence 9998888888999999988765
No 61
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.00 E-value=6.5e-05 Score=86.71 Aligned_cols=143 Identities=20% Similarity=0.148 Sum_probs=112.5
Q ss_pred CCChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHh-----h----cCCHHHHHHHHHHHHHHHhccCCCCCCc
Q 001584 47 AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESIT-----L----EHSAPVRRASANVVSIIAKYAVPAGEWP 117 (1049)
Q Consensus 47 ~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~-----~----e~~~~vr~~~~~~l~~i~~~~~~~~~w~ 117 (1049)
++..++|+-|++.+|...+.+...++-+..+.+.-.++..+. . +.-..||.+.+++++.+.++..+ ....
T Consensus 88 ~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~-s~~~ 166 (1549)
T KOG0392|consen 88 EPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHMDE-SLIK 166 (1549)
T ss_pred CchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhhhh-HhhH
Confidence 667899999999999999999888776666655555544332 1 12347999999999999988765 3677
Q ss_pred chHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhccc
Q 001584 118 DLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFT 191 (1049)
Q Consensus 118 ~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~ 191 (1049)
+.+..+.+.+..++|+.|++++..+.+......+.+....+.+++.+..++.| ++..||..|...+.......
T Consensus 167 ~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~d-s~ddv~~~aa~~l~~~~s~~ 239 (1549)
T KOG0392|consen 167 ETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLED-SDDDVRSVAAQFLVPAPSIQ 239 (1549)
T ss_pred HHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-cchHHHHHHHHHhhhhhHHH
Confidence 78889999999899999999999998887754444456667888999999999 88999999988887665544
No 62
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=98.97 E-value=1.3e-07 Score=100.08 Aligned_cols=218 Identities=16% Similarity=0.168 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhhhCCC---CChHHHHHHHHHHHHHHhhhHh--hhhhcCChHHHHH-
Q 001584 222 VAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHN---LEPNTRHQAIQIISWLAKYKYN--SLKKHKLVIPILQ- 295 (1049)
Q Consensus 222 ~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~r~~a~~~l~~l~~~~~~--~~~~~~~~~~il~- 295 (1049)
+...+++++...++.....++++++.+++..++++..-. ..+.+-..++.++.++++.... .+...+.+..++.
T Consensus 112 vK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~ 191 (370)
T PF08506_consen 112 VKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEK 191 (370)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHH
Confidence 345677888888888888888888888888877765432 2345666788999988754221 1222234455554
Q ss_pred HHhhhhccCCCC----------------CCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhc------CCChhH
Q 001584 296 VMCPLLAESNEA----------------GEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQ------NASPKY 353 (1049)
Q Consensus 296 ~l~~~l~~~~~~----------------~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~------~~~~~~ 353 (1049)
.++|.|.-.++| |..|..+.|++|.+.+..+++..++.+.+.+...+...++ +.+|+.
T Consensus 192 VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~ 271 (370)
T PF08506_consen 192 VIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRS 271 (370)
T ss_dssp THHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHH
T ss_pred hccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHH
Confidence 456776533221 1124468899999999999999988888887777777665 568999
Q ss_pred HhHHHHHHHHHhhcChH------------HHHHhH-HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhH
Q 001584 354 REAAVTAIGIISEGCAE------------WMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESV 420 (1049)
Q Consensus 354 r~~al~~l~~i~~~~~~------------~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l 420 (1049)
+.+|+..++.++..... .+.+.+ ..++|-+. .-.+.+|.+|..|++.+..+-..+++ +.+..+
T Consensus 272 KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~---~~l~~~ 347 (370)
T PF08506_consen 272 KDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK---EQLLQI 347 (370)
T ss_dssp HHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H---HHHHHH
T ss_pred HHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH---HHHHHH
Confidence 99999999999864311 112221 22334333 22257899999999999999888763 567779
Q ss_pred HHHHHHhccCCChHHHHHHHHHH
Q 001584 421 LPCILNALEDESDEVKEKSYYAL 443 (1049)
Q Consensus 421 l~~l~~~l~~~~~~v~~~a~~~l 443 (1049)
+|.++..|++++.-|+..|+.++
T Consensus 348 ~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 348 FPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcchhhhhhhhC
Confidence 99999999999988988887664
No 63
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.97 E-value=9.9e-07 Score=97.27 Aligned_cols=366 Identities=14% Similarity=0.146 Sum_probs=224.6
Q ss_pred HHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhh---hhcCChHH-HHHH
Q 001584 221 DVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSL---KKHKLVIP-ILQV 296 (1049)
Q Consensus 221 ~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~---~~~~~~~~-il~~ 296 (1049)
.....+++++..+.. .+..+......++..+......+. +.+.-...+..+..+.+...... ....|... +++.
T Consensus 17 ~~~~~~L~~l~~ls~-~~~i~~~~~~~ll~kl~~~~~~~~-~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~ 94 (415)
T PF12460_consen 17 SNYERILEALAALST-SPQILETLSIRLLNKLSIVCQSES-SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPR 94 (415)
T ss_pred hHHHHHHHHHHHHHC-ChhHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHH
Confidence 344556666666553 344555566666666655554333 44555556666666654432222 11112222 6666
Q ss_pred HhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhc----------CCC---hhHHhHHHHHHHH
Q 001584 297 MCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQ----------NAS---PKYREAAVTAIGI 363 (1049)
Q Consensus 297 l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~----------~~~---~~~r~~al~~l~~ 363 (1049)
++...........+.++..-...+..+..+...++.+--..++..+...+. +.. +..+......-+.
T Consensus 95 l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 174 (415)
T PF12460_consen 95 LFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAI 174 (415)
T ss_pred HHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHH
Confidence 666655443322222334556677777778877773333333333333222 111 1222222222233
Q ss_pred HhhcChHHHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhc-cCCChHHHHHHHH
Q 001584 364 ISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNAL-EDESDEVKEKSYY 441 (1049)
Q Consensus 364 i~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l-~~~~~~v~~~a~~ 441 (1049)
++.-.++...+...+++..++.... ..++..|.+++.+++.+...+++. +.++.++..+...+ ....+..+..+..
T Consensus 175 l~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~--~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 252 (415)
T PF12460_consen 175 LCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD--DDLDEFLDSLLQSISSSEDSELRPQALE 252 (415)
T ss_pred HHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh--hhHHHHHHHHHhhhcccCCcchhHHHHH
Confidence 3332222222345566666665543 456899999999999998876431 24455555555555 3333445555665
Q ss_pred HHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhh--------hcc-----ccHHHHHHHHHH
Q 001584 442 ALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ--------AFI-----PYAERVLELLKI 508 (1049)
Q Consensus 442 ~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~--------~~~-----~~~~~~~~~l~~ 508 (1049)
.+.-+.+..--.-.|....+++.++..+.+ +.+...+..+++.+..-.++ ... .+|..++|.+.+
T Consensus 253 ~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~ 330 (415)
T PF12460_consen 253 ILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLE 330 (415)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHH
Confidence 555555554223346677888888888877 66777777887777654221 111 355667777777
Q ss_pred HHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhh
Q 001584 509 FMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLV 588 (1049)
Q Consensus 509 ~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i 588 (1049)
.....+++ .|..-+.+++.+...+.++.+.++++.+++.++++++.++.+++..++.++..+...-++.+.+|+..+
T Consensus 331 ~~~~~~~~---~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sL 407 (415)
T PF12460_consen 331 GFKEADDE---IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSL 407 (415)
T ss_pred HHhhcChh---hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 66654433 455567899999999988889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhh
Q 001584 589 VPLAFSS 595 (1049)
Q Consensus 589 ~~~ll~~ 595 (1049)
+|.|++.
T Consensus 408 I~~LL~l 414 (415)
T PF12460_consen 408 IPRLLKL 414 (415)
T ss_pred HHHHHhc
Confidence 9999864
No 64
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.97 E-value=0.00019 Score=80.60 Aligned_cols=232 Identities=12% Similarity=0.124 Sum_probs=156.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhh--ccCCCC-hHHHHHHHH
Q 001584 643 DEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIF--QSHNEG-PAKAREILD 719 (1049)
Q Consensus 643 ~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~-~~~~~~~~~ 719 (1049)
+..+.|+..+..+.+.+-....|-...+...++..++. +++-..++.++.-++.-..... .++... .=..+.++.
T Consensus 789 dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~ 866 (1030)
T KOG1967|consen 789 DLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFC 866 (1030)
T ss_pred chhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHH
Confidence 35666777777766655333334444555555555443 3334445555544432111000 000001 123456788
Q ss_pred HHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhHHH
Q 001584 720 TVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVI 799 (1049)
Q Consensus 720 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1049)
.++|.+.+.+... ........+.++..++..++...+.+.++.+.+.+++.|.-... .+
T Consensus 867 ~ivP~l~~~~~t~-~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~--------------------~v 925 (1030)
T KOG1967|consen 867 DIVPILVSKFETA-PGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDV--------------------IV 925 (1030)
T ss_pred hhHHHHHHHhccC-CccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCcc--------------------ch
Confidence 8999998887733 34445567788899988888777778888888877766653221 12
Q ss_pred HHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhccCCC--cccchhhhHhHHHHHhhcCCc-hhhcHhhhHHHHHHhcC
Q 001584 800 MDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRP--LQDRTMVVATLAEVARDMGSP-IAAYVDRVMPLVLKELA 876 (1049)
Q Consensus 800 ~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~--~~~r~~a~~~l~~l~~~~~~~-~~~~~~~i~~~l~~~l~ 876 (1049)
.-....+++.+....+.-...|++.++|.++..-.+.++ ..+|..|+.+++.+.+..+.. +.+|.++++..+.+.|.
T Consensus 926 ~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~Ld 1005 (1030)
T KOG1967|consen 926 RVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILD 1005 (1030)
T ss_pred hhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccC
Confidence 115667778888888888889999999999987665543 568999999999999977766 78999999999999999
Q ss_pred CCChHhHHHHHHHHHHHHhhc
Q 001584 877 SPDAMNRRNAAFCVGELCKNG 897 (1049)
Q Consensus 877 ~~~~~vr~~a~~~lg~l~~~~ 897 (1049)
|+..-||..|+.+=+.....+
T Consensus 1006 DkKRlVR~eAv~tR~~W~~l~ 1026 (1030)
T KOG1967|consen 1006 DKKRLVRKEAVDTRQNWYMLG 1026 (1030)
T ss_pred cHHHHHHHHHHHHhhhhhhcc
Confidence 999999999998777665443
No 65
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=4.2e-05 Score=84.34 Aligned_cols=502 Identities=14% Similarity=0.143 Sum_probs=263.9
Q ss_pred CHHHHHHHHHHHH--HHhcCCC-cH-HHHHHHHhcCC--ChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHhh
Q 001584 16 DNDARRQAEDQIK--RLAKDPQ-VV-PALVQHLRTAK--TPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITL 89 (1049)
Q Consensus 16 d~~~r~~a~~~L~--~~~~~p~-~~-~~l~~il~~~~--~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~ 89 (1049)
|+.-|++--..|- .+...|. |- ..++.+++++. +..+-=+|+.+|-.. ..+..-.+.+.+-+-|.+
T Consensus 47 d~~~r~rniaKLlYi~MLGypahFGqieclKLias~~f~dKRiGYLaamLlLdE--------~qdvllLltNslknDL~s 118 (866)
T KOG1062|consen 47 DPRKRHRNIAKLLYIHMLGYPAHFGQIECLKLIASDNFLDKRIGYLAAMLLLDE--------RQDLLLLLTNSLKNDLNS 118 (866)
T ss_pred CHHHHHHHHHHHHHHHHhCCCccchhhHHHHHhcCCCchHHHHHHHHHHHHhcc--------chHHHHHHHHHHHhhccC
Confidence 3444444444442 3334443 22 23445444332 333444555554332 223334444444444554
Q ss_pred cCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhC
Q 001584 90 EHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQ 169 (1049)
Q Consensus 90 e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~ 169 (1049)
++..+.-.+-.+++.|+..+ .-+++.|.+.+.+++.++.+|.-|..|...+....|+. ...+++-..+.|.
T Consensus 119 -~nq~vVglAL~alg~i~s~E----mardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l----~e~f~~~~~~lL~ 189 (866)
T KOG1062|consen 119 -SNQYVVGLALCALGNICSPE----MARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL----VEHFVIAFRKLLC 189 (866)
T ss_pred -CCeeehHHHHHHhhccCCHH----HhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH----HHHhhHHHHHHHh
Confidence 45555555555566665433 66889999999999999999999999999888777754 3445566667777
Q ss_pred CCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcC-----------CHHHHHHHHHHHHHHhccCC
Q 001584 170 DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASG-----------EEDVAVIAFEIFDELIESPA 238 (1049)
Q Consensus 170 ~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~-----------~~~~~~~~~~~l~~l~~~~~ 238 (1049)
+ .+.-|-.+++..+..++...+ +....|++++|.++..+.+....+ +|=.....++.|.-+....+
T Consensus 190 e-k~hGVL~~~l~l~~e~c~~~~--~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~ 266 (866)
T KOG1062|consen 190 E-KHHGVLIAGLHLITELCKISP--DALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA 266 (866)
T ss_pred h-cCCceeeeHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc
Confidence 7 777788888888888777654 346668889999999988876532 22223344444443333322
Q ss_pred cchhhhHHHHHHHHHHhhhCCCCChHHHH-HHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHH
Q 001584 239 PLLGDSVKSIVHFSLEVSSSHNLEPNTRH-QAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDR 317 (1049)
Q Consensus 239 ~~~~~~~~~l~~~l~~~~~~~~~~~~~r~-~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~ 317 (1049)
.. ...+.+ .+-+++.+.+.+..+-. --.|++.++....+ +.++..--++.+-..|...+. +.|.
T Consensus 267 da-Sd~M~D---iLaqvatntdsskN~GnAILYE~V~TI~~I~~----~~~LrvlainiLgkFL~n~d~-------NirY 331 (866)
T KOG1062|consen 267 DA-SDLMND---ILAQVATNTDSSKNAGNAILYECVRTIMDIRS----NSGLRVLAINILGKFLLNRDN-------NIRY 331 (866)
T ss_pred cH-HHHHHH---HHHHHHhcccccccchhHHHHHHHHHHHhccC----CchHHHHHHHHHHHHhcCCcc-------ceee
Confidence 21 111111 11122222211110000 00122222211100 000111112222222322222 4444
Q ss_pred HHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHH
Q 001584 318 AAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGA 397 (1049)
Q Consensus 318 ~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~ 397 (1049)
.|...|..+...-+. .+..--..|.+.++++|...|.-|+.....+... .++..++.-++..|...++..+..
T Consensus 332 vaLn~L~r~V~~d~~-avqrHr~tIleCL~DpD~SIkrralELs~~lvn~------~Nv~~mv~eLl~fL~~~d~~~k~~ 404 (866)
T KOG1062|consen 332 VALNMLLRVVQQDPT-AVQRHRSTILECLKDPDVSIKRRALELSYALVNE------SNVRVMVKELLEFLESSDEDFKAD 404 (866)
T ss_pred eehhhHHhhhcCCcH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc------ccHHHHHHHHHHHHHhccHHHHHH
Confidence 444444444433221 2222333445567888888888888877777764 455566666666666567777777
Q ss_pred HHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchH-HHHHHHHH--hhcCCCH
Q 001584 398 ASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLD-PLMGKLLA--ALENSPR 474 (1049)
Q Consensus 398 a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~-~ll~~l~~--~l~~~~~ 474 (1049)
...-+..+++.+.|+-.-|++.++..+..+ . .-|+..+...+-.++.+...+...|.. .++..+.. .+....+
T Consensus 405 ~as~I~~laEkfaP~k~W~idtml~Vl~~a-G---~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e 480 (866)
T KOG1062|consen 405 IASKIAELAEKFAPDKRWHIDTMLKVLKTA-G---DFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQE 480 (866)
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHhc-c---cccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhh
Confidence 777788888887775444555444443322 2 234555555555555554333333221 22222221 1122445
Q ss_pred hHHHHHHHHHHHHHHHh--h---hhccccH-HHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHH
Q 001584 475 NLQETCMSAIGSVAAAA--E---QAFIPYA-ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFV 548 (1049)
Q Consensus 475 ~v~~~~~~~l~~l~~~~--~---~~~~~~~-~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~ 548 (1049)
.+...+.+|||-.+... + +....+- ..++..+.+++...... ...|+.++.++..+....+.. .+.+=
T Consensus 481 ~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~-~~tk~yal~Al~KLSsr~~s~-----~~ri~ 554 (866)
T KOG1062|consen 481 PLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSD-STTKGYALTALLKLSSRFHSS-----SERIK 554 (866)
T ss_pred hHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHhhcccc-----HHHHH
Confidence 66778888988776322 1 2222233 55888888888765443 567888888888877655421 33333
Q ss_pred HHHHhccCCCCchhhHHHHHH
Q 001584 549 EAAISGFGLEFSELREYTHGF 569 (1049)
Q Consensus 549 ~~l~~~l~~~~~~~r~~~~~~ 569 (1049)
+.+.+...+-+-++++.++..
T Consensus 555 ~lI~~~~~s~~~elQQRa~E~ 575 (866)
T KOG1062|consen 555 QLISSYKSSLDTELQQRAVEY 575 (866)
T ss_pred HHHHHhcccccHHHHHHHHHH
Confidence 333332233355677666553
No 66
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.95 E-value=0.00037 Score=82.48 Aligned_cols=166 Identities=14% Similarity=0.227 Sum_probs=112.7
Q ss_pred HHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCH
Q 001584 395 RGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPR 474 (1049)
Q Consensus 395 r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~ 474 (1049)
+..|.+..-.++.. .++...++..+..++..+..+...+|..|+.||..+++.-+.-+ --+.+-..+..-+.+...
T Consensus 794 ~~~a~li~~~la~~--r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL--~~~dvq~~Vh~R~~Dssa 869 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHA--RSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL--SRPDVQEAVHGRLNDSSA 869 (1692)
T ss_pred chhHHHHHHHHHhh--hHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh--cCHHHHHHHHHhhccchh
Confidence 33444443333333 34667788899999999999999999999999999987644322 234566667777788889
Q ss_pred hHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhc
Q 001584 475 NLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISG 554 (1049)
Q Consensus 475 ~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~ 554 (1049)
.||++|++.+|..+...++...+||+.+...+ .|+...+|.+++..+-.++.... .|.... .+...++.-
T Consensus 870 sVREAaldLvGrfvl~~~e~~~qyY~~i~erI-------lDtgvsVRKRvIKIlrdic~e~p--df~~i~-~~cakmlrR 939 (1692)
T KOG1020|consen 870 SVREAALDLVGRFVLSIPELIFQYYDQIIERI-------LDTGVSVRKRVIKILRDICEETP--DFSKIV-DMCAKMLRR 939 (1692)
T ss_pred HHHHHHHHHHhhhhhccHHHHHHHHHHHHhhc-------CCCchhHHHHHHHHHHHHHHhCC--ChhhHH-HHHHHHHHH
Confidence 99999999999998888887778887765443 34556788899999988886552 233222 333334444
Q ss_pred cCCCCchhhHHHHHHHHHHH
Q 001584 555 FGLEFSELREYTHGFFSNIA 574 (1049)
Q Consensus 555 l~~~~~~~r~~~~~~l~~l~ 574 (1049)
.+++...+++-+...|-.+.
T Consensus 940 v~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 940 VNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred hccchhHHHHHHHHHHHHHh
Confidence 45554446665555555444
No 67
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=4.1e-08 Score=96.51 Aligned_cols=380 Identities=14% Similarity=0.108 Sum_probs=227.1
Q ss_pred CCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHH
Q 001584 130 EQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILN 209 (1049)
Q Consensus 130 ~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~ 209 (1049)
++.+.+..+...+..+.+.... ....+....+...+++ .++.+..+|..++++++-..+...-+..+..+=+.+.+
T Consensus 59 DnlnlqrsaalafAeitek~vr---~Vsres~epvl~llqs-~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~q 134 (550)
T KOG4224|consen 59 DNLNLQRSAALAFAEITEKGVR---RVSRESNEPVLALLQS-CDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQ 134 (550)
T ss_pred cccccchHHHHHHHHHHHHHHH---HhhhhhhhHHHHHHhC-cchhhhhhhhhhhccceeccCCceEEEeccChHHHHHH
Confidence 3334444455556655544332 2223344455566777 88889999999999887665432211112222233333
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCC
Q 001584 210 VSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKL 289 (1049)
Q Consensus 210 ~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~ 289 (1049)
+.. +...++..+..|++.++.......+-.-..-+..+..+.. +.+..+|..+...+..+....... +. +
T Consensus 135 ----mmt-d~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLak--skdirvqrnatgaLlnmThs~EnR--r~-L 204 (550)
T KOG4224|consen 135 ----MMT-DGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAK--SKDIRVQRNATGALLNMTHSRENR--RV-L 204 (550)
T ss_pred ----hcC-CCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcc--cchhhHHHHHHHHHHHhhhhhhhh--hh-h
Confidence 232 3445666777788877765432222111112222333333 347889999999988876432211 10 1
Q ss_pred h-HHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc-----hhchHHHHHHHHhhhcCCChhHHhHHHHHHHH
Q 001584 290 V-IPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-----KHVFPPVFEFASVSCQNASPKYREAAVTAIGI 363 (1049)
Q Consensus 290 ~-~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~-----~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~ 363 (1049)
+ ..-++.+..++...+. .++..+..+++.++-.-. ...-|.+++.+..++.+++.+.+.-|-.+|+.
T Consensus 205 V~aG~lpvLVsll~s~d~-------dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrn 277 (550)
T KOG4224|consen 205 VHAGGLPVLVSLLKSGDL-------DVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRN 277 (550)
T ss_pred hccCCchhhhhhhccCCh-------hHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhh
Confidence 1 1245666777766654 456666666665553221 22336688888888999999999999999999
Q ss_pred HhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCC-hHHHHHHHHH
Q 001584 364 ISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES-DEVKEKSYYA 442 (1049)
Q Consensus 364 i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~-~~v~~~a~~~ 442 (1049)
++........-.-..-+|.+++.+++|.-..-.+...|+..++-+-..+..-.-..++..+++.|...+ .+++-+|...
T Consensus 278 lasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvst 357 (550)
T KOG4224|consen 278 LASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVST 357 (550)
T ss_pred hcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHH
Confidence 987644322211223478888888988777777777888877765433221111245666777776554 5699999999
Q ss_pred HHHHHHhhccccccchH-HHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhccccHH--HHHHHHHHHHhccChhhhh
Q 001584 443 LAAFCEDMGEEILPFLD-PLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAE--RVLELLKIFMVLTNDEDLR 519 (1049)
Q Consensus 443 l~~l~~~~~~~l~~~~~-~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~ 519 (1049)
|.+++.........+.+ .-++.+..++.+....+|...-.|++.++-. +.+..++- .++|.|..... ++..+
T Consensus 358 LrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~--d~~k~~lld~gi~~iLIp~t~---s~s~E 432 (550)
T KOG4224|consen 358 LRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN--DNDKEALLDSGIIPILIPWTG---SESEE 432 (550)
T ss_pred HHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc--cccHHHHhhcCCcceeecccC---ccchh
Confidence 99998766443332222 4567777788888899999999999887643 22333332 24455544332 33345
Q ss_pred hHHHHHHHHHHHHHhh
Q 001584 520 SRARATELLGLVAESV 535 (1049)
Q Consensus 520 ~r~~a~~~l~~l~~~~ 535 (1049)
+|+.+-.+++.++..+
T Consensus 433 v~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 433 VRGNAAAALINLSSDV 448 (550)
T ss_pred hcccHHHHHHhhhhhh
Confidence 7788888888877544
No 68
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.93 E-value=6e-08 Score=98.16 Aligned_cols=191 Identities=17% Similarity=0.195 Sum_probs=136.2
Q ss_pred HHHHHhhhcCCChhHHhHHHHHHHHHhhcC-----hHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHH
Q 001584 339 FEFASVSCQNASPKYREAAVTAIGIISEGC-----AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI 413 (1049)
Q Consensus 339 l~~l~~~l~~~~~~~r~~al~~l~~i~~~~-----~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 413 (1049)
...+...-.+.+|..|..|+..|..+..+. .+.+.+.+..++..+...+.|....|...|+.+++.++..++..+
T Consensus 9 ~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~ 88 (228)
T PF12348_consen 9 LAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHF 88 (228)
T ss_dssp -TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhH
Confidence 333333346789999999999999998876 234445566777889999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHH-HHHHHHhhcCCCHhHHHHHHHHHHHHHHHhh
Q 001584 414 VSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPL-MGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (1049)
Q Consensus 414 ~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~l-l~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~ 492 (1049)
.++.+.++|.|++.+.+++..++..|..+|..+++.++ +.+.+ ...+.....+.++.+|..++.++..+....+
T Consensus 89 ~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 89 EPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999998765 23345 6777778888999999999999999988877
Q ss_pred ---hhccc--cHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhch
Q 001584 493 ---QAFIP--YAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGR 537 (1049)
Q Consensus 493 ---~~~~~--~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~ 537 (1049)
..+.. +++.+.+.+...+.. .+..+|..|-.++..+...+|.
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D---~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSD---ADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTS---S-HHHHHHHHHHHHHHHHHH-H
T ss_pred chHhhhcccchHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHCCH
Confidence 34433 346778888777754 3456888888999988877763
No 69
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=4.2e-06 Score=91.90 Aligned_cols=421 Identities=14% Similarity=0.125 Sum_probs=238.5
Q ss_pred cchHHHHHHh----ccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccC
Q 001584 117 PDLLPFLFQF----SQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTN 192 (1049)
Q Consensus 117 ~~ll~~l~~~----l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~ 192 (1049)
.+++-.+.+. +++++.-+...|+.+++.++. .+-.+++.|-+.+.++. +++.+|+.|..|..+++...+
T Consensus 102 qdvllLltNslknDL~s~nq~vVglAL~alg~i~s------~EmardlapeVe~Ll~~-~~~~irKKA~Lca~r~irK~P 174 (866)
T KOG1062|consen 102 QDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICS------PEMARDLAPEVERLLQH-RDPYIRKKAALCAVRFIRKVP 174 (866)
T ss_pred hHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCC------HHHhHHhhHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCc
Confidence 4444444443 455565666778888887763 23356778888889998 999999999999999988775
Q ss_pred ChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCC---cchhhhHHHHHHHHHHhhhCCC---------
Q 001584 193 DGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA---PLLGDSVKSIVHFSLEVSSSHN--------- 260 (1049)
Q Consensus 193 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~---~~~~~~~~~l~~~l~~~~~~~~--------- 260 (1049)
+- ...++......+.+.+..+...++..+.++.+..+ .+|+...+.++..+-++...+.
T Consensus 175 ~l---------~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi 245 (866)
T KOG1062|consen 175 DL---------VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGI 245 (866)
T ss_pred hH---------HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCC
Confidence 32 22333344445566666677777777777777643 4455566666666555543321
Q ss_pred CChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcH-HHHHHHHHHHHHHHcc-hhchHHH
Q 001584 261 LEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAP-DRAAAEVIDTMALNLA-KHVFPPV 338 (1049)
Q Consensus 261 ~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~-~~~a~~~l~~l~~~~~-~~~~~~l 338 (1049)
.++-.+...+.++.-+....++.. ..+-..+-+.....+.. .+. .....+|+..+....+ ..+....
T Consensus 246 ~dPFLQi~iLrlLriLGq~d~daS------d~M~DiLaqvatntdss-----kN~GnAILYE~V~TI~~I~~~~~Lrvla 314 (866)
T KOG1062|consen 246 SDPFLQIRILRLLRILGQNDADAS------DLMNDILAQVATNTDSS-----KNAGNAILYECVRTIMDIRSNSGLRVLA 314 (866)
T ss_pred CchHHHHHHHHHHHHhcCCCccHH------HHHHHHHHHHHhccccc-----ccchhHHHHHHHHHHHhccCCchHHHHH
Confidence 134455556666655554322211 01111111222222110 011 0111233333333333 3334445
Q ss_pred HHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhh
Q 001584 339 FEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE 418 (1049)
Q Consensus 339 l~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 418 (1049)
+..+-.++.+.+-..|+.|+..|......-+.....| -..|+.|++||+..+|..|+..+..+... ..+.
T Consensus 315 iniLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH----r~tIleCL~DpD~SIkrralELs~~lvn~------~Nv~ 384 (866)
T KOG1062|consen 315 INILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH----RSTILECLKDPDVSIKRRALELSYALVNE------SNVR 384 (866)
T ss_pred HHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH----HHHHHHHhcCCcHHHHHHHHHHHHHHhcc------ccHH
Confidence 5556666777788889999999988888777666666 34678899999999999999988777654 2345
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhcccc
Q 001584 419 SVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPY 498 (1049)
Q Consensus 419 ~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~ 498 (1049)
.++..++..|...++..+.....-+..+++.+...-.=|++.++..+. ..-..|+..+...+-.++.........|
T Consensus 385 ~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~----~aG~~V~~dv~~nll~LIa~~~~e~~~y 460 (866)
T KOG1062|consen 385 VMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLK----TAGDFVNDDVVNNLLRLIANAFQELHEY 460 (866)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH----hcccccchhhHHHHHHHHhcCCcchhhH
Confidence 577888888887788899888888888888875433334444444433 3333344444444444443332222222
Q ss_pred H-HHHHHHHHHH-HhccChhhhhhHHHHHHHHHHHHHhh----chhc-cccchHHHHHHHHhccC--CCCchhhHHHHHH
Q 001584 499 A-ERVLELLKIF-MVLTNDEDLRSRARATELLGLVAESV----GRAR-MEPILPPFVEAAISGFG--LEFSELREYTHGF 569 (1049)
Q Consensus 499 ~-~~~~~~l~~~-l~~~~~~~~~~r~~a~~~l~~l~~~~----~~~~-~~~~~~~i~~~l~~~l~--~~~~~~r~~~~~~ 569 (1049)
. .+++..+... +...+ +..+...++-|+|.-+.-+ +.+. ....-..++..+.+.+. ..+...+.+++.+
T Consensus 461 ~~~rLy~a~~~~~~~~is--~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~A 538 (866)
T KOG1062|consen 461 AVLRLYLALSEDTLLDIS--QEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTA 538 (866)
T ss_pred HHHHHHHHHhhhhhhhhh--hhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 2 1122222111 00111 1123345677777665322 1111 11122344444444333 2236788888888
Q ss_pred HHHHHHHcccC
Q 001584 570 FSNIAGVLEDG 580 (1049)
Q Consensus 570 l~~l~~~~~~~ 580 (1049)
+-.+...++..
T Consensus 539 l~KLSsr~~s~ 549 (866)
T KOG1062|consen 539 LLKLSSRFHSS 549 (866)
T ss_pred HHHHHhhcccc
Confidence 88888766543
No 70
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=4.2e-05 Score=90.12 Aligned_cols=143 Identities=22% Similarity=0.301 Sum_probs=118.1
Q ss_pred HHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHH
Q 001584 4 SLELLLIQFLM--PDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ 81 (1049)
Q Consensus 4 ~l~~ll~~~~s--~d~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~ 81 (1049)
++.+.+....+ ++++.|.+|.+.+.+++..|+.+...-.++..++++.+|.+|..+|-+.++.+|..++.+.+..+|+
T Consensus 11 ~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s~~~~~k~f~Lqlle~vik~~W~~~~~~~r~glk~ 90 (1041)
T KOG2020|consen 11 ELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLSTNPILKYFALQLLENVIKFRWNSLPVEERVGLKN 90 (1041)
T ss_pred HHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhccCCchhheeeHHHHHHHHHHhcccCCccccHHHHH
Confidence 45555555554 4899999999999999999999888889998888999999999999999999999999999999999
Q ss_pred HHHHHHhhc--------CCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhh
Q 001584 82 SLIESITLE--------HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTET 148 (1049)
Q Consensus 82 ~ll~~l~~e--------~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~ 148 (1049)
..+...... ....++.+++.++-.|++.++| +.||+++|.+.+....+ ...++.++.++..+.+.
T Consensus 91 ~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp-~~wp~~i~dl~~~s~~s-~~~~el~m~Il~lLsEd 163 (1041)
T KOG2020|consen 91 YVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWP-AIWPTFIPDLAQSSKTS-ETVCELSMIILLLLSEE 163 (1041)
T ss_pred HHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHH-hhcchhhhhHHHHhhcC-cccchHHHHHHHHHHHH
Confidence 998877632 2345788889999999999999 59999999999988643 34556666666666654
No 71
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.86 E-value=0.00075 Score=80.06 Aligned_cols=160 Identities=18% Similarity=0.229 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHcc-hhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHH
Q 001584 319 AAEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGA 397 (1049)
Q Consensus 319 a~~~l~~l~~~~~-~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~ 397 (1049)
+......++...+ ..-+...+..|...+..+....|--|+.|++.+++..+..+.. +.+-..+-..+.|.+..||.+
T Consensus 797 a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~--~dvq~~Vh~R~~DssasVREA 874 (1692)
T KOG1020|consen 797 AKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSR--PDVQEAVHGRLNDSSASVREA 874 (1692)
T ss_pred HHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcC--HHHHHHHHHhhccchhHHHHH
Confidence 3344444444444 4456777888878888888899999999999999986654332 456678888999999999999
Q ss_pred HHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHH
Q 001584 398 ASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQ 477 (1049)
Q Consensus 398 a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~ 477 (1049)
|...+|++.-..++.+.+| ...+.+.+.|+.-.||.++...+..+++..++. +-.+.+...++.-.++....++
T Consensus 875 aldLvGrfvl~~~e~~~qy----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf--~~i~~~cakmlrRv~DEEg~I~ 948 (1692)
T KOG1020|consen 875 ALDLVGRFVLSIPELIFQY----YDQIIERILDTGVSVRKRVIKILRDICEETPDF--SKIVDMCAKMLRRVNDEEGNIK 948 (1692)
T ss_pred HHHHHhhhhhccHHHHHHH----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHHHHhccchhHHH
Confidence 9999999988875544444 455677888998999999999999999887652 1233444444444455555566
Q ss_pred HHHHHHHHH
Q 001584 478 ETCMSAIGS 486 (1049)
Q Consensus 478 ~~~~~~l~~ 486 (1049)
.-+.+++-.
T Consensus 949 kLv~etf~k 957 (1692)
T KOG1020|consen 949 KLVRETFLK 957 (1692)
T ss_pred HHHHHHHHH
Confidence 666555544
No 72
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.82 E-value=1.6e-07 Score=95.15 Aligned_cols=188 Identities=16% Similarity=0.194 Sum_probs=132.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHc-chhchHHHH-------HHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHH
Q 001584 310 DDDLAPDRAAAEVIDTMALNL-AKHVFPPVF-------EFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLH 381 (1049)
Q Consensus 310 d~~~~~~~~a~~~l~~l~~~~-~~~~~~~ll-------~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~ 381 (1049)
+.+|+.|..+..-+..+.... +....+.+. ..+...+.+.....-..|+.+++.++...+..+.++.+.++|
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~ 97 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLP 97 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 457899999999888888766 222222222 344445556666777899999999999998889999999999
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhH-HHHHHHhccCCChHHHHHHHHHHHHHHHhhc---ccccc-
Q 001584 382 IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESV-LPCILNALEDESDEVKEKSYYALAAFCEDMG---EEILP- 456 (1049)
Q Consensus 382 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l-l~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~---~~l~~- 456 (1049)
.++..+.|++..+|.+|..+|..++...+ +...+ ++.+..+..+.++.+|..++..+..++...+ ..+..
T Consensus 98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 98 PLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 99999999999999999999999999875 12234 7777888999999999999999999999887 34443
Q ss_pred -chHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhccccHHHH
Q 001584 457 -FLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERV 502 (1049)
Q Consensus 457 -~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~ 502 (1049)
.++.+.+.+...+.+.++.||..+-.++..+....|+.....+..+
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l 219 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILSML 219 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-------
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhcc
Confidence 3588999999999999999999999999999888776544444433
No 73
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=1e-06 Score=86.95 Aligned_cols=443 Identities=14% Similarity=0.129 Sum_probs=250.3
Q ss_pred HHHHHHHHHHHHhcCC--CcH----HHHHHHHhcCCChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHhhcCC
Q 001584 19 ARRQAEDQIKRLAKDP--QVV----PALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHS 92 (1049)
Q Consensus 19 ~r~~a~~~L~~~~~~p--~~~----~~l~~il~~~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~~ 92 (1049)
.|......|+.++... +|. .--+.++.-+.+......|++.+-....+.-..++.+..+- .+-.+.+ .+
T Consensus 24 erEav~~ll~~lEd~~~i~fyS~~plraltvL~ySDnlnlqrsaalafAeitek~vr~Vsres~ep----vl~llqs-~d 98 (550)
T KOG4224|consen 24 EREAVADLLNRLEDRNAISFYSASPLRALTVLKYSDNLNLQRSAALAFAEITEKGVRRVSRESNEP----VLALLQS-CD 98 (550)
T ss_pred hHHHHHHHHHhhcccccccccCCCccchheeeeeccccccchHHHHHHHHHHHHHHHHhhhhhhhH----HHHHHhC-cc
Confidence 4555666666665421 221 12233333344444444455444444444333444443333 2334444 88
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCC---cchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhccc-ccHHHHHHHHHHhh
Q 001584 93 APVRRASANVVSIIAKYAVPAGEW---PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFR-PHFADMQALLLKCL 168 (1049)
Q Consensus 93 ~~vr~~~~~~l~~i~~~~~~~~~w---~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l 168 (1049)
+.+...++..++.++......+.. ..+-+.+.+.+. +...++..++.|+..++........ .+... +..+.+.-
T Consensus 99 ~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmt-d~vevqcnaVgCitnLaT~d~nk~kiA~sGa-L~pltrLa 176 (550)
T KOG4224|consen 99 KCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMT-DGVEVQCNAVGCITNLATFDSNKVKIARSGA-LEPLTRLA 176 (550)
T ss_pred hhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcC-CCcEEEeeehhhhhhhhccccchhhhhhccc-hhhhHhhc
Confidence 999999999999887644332222 334446666665 4456788899999988754221110 11122 33344544
Q ss_pred CCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccC--CcchhhhHH
Q 001584 169 QDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP--APLLGDSVK 246 (1049)
Q Consensus 169 ~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~--~~~~~~~~~ 246 (1049)
+. .+..+|..+..+|.++....+...... -..-+|.++.. +..++.+++..++..+..++-.. .+.+.+.=+
T Consensus 177 ks-kdirvqrnatgaLlnmThs~EnRr~LV-~aG~lpvLVsl----l~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep 250 (550)
T KOG4224|consen 177 KS-KDIRVQRNATGALLNMTHSRENRRVLV-HAGGLPVLVSL----LKSGDLDVQYYCTTAISNIAVDRRARKILAQAEP 250 (550)
T ss_pred cc-chhhHHHHHHHHHHHhhhhhhhhhhhh-ccCCchhhhhh----hccCChhHHHHHHHHhhhhhhhHHHHHHHHhccc
Confidence 44 788899999999988766543221111 12345655554 67789999998888888775432 333333344
Q ss_pred HHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHh--hhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHH
Q 001584 247 SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYN--SLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVID 324 (1049)
Q Consensus 247 ~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~ 324 (1049)
.+++.+..++.++ ++.++-+|-..+..++..... .+...+ -+|.++.++..+.- ..-.+...|+.
T Consensus 251 ~lv~~Lv~Lmd~~--s~kvkcqA~lALrnlasdt~Yq~eiv~ag----~lP~lv~Llqs~~~-------plilasVaCIr 317 (550)
T KOG4224|consen 251 KLVPALVDLMDDG--SDKVKCQAGLALRNLASDTEYQREIVEAG----SLPLLVELLQSPMG-------PLILASVACIR 317 (550)
T ss_pred chHHHHHHHHhCC--ChHHHHHHHHHHhhhcccchhhhHHHhcC----CchHHHHHHhCcch-------hHHHHHHHHHh
Confidence 5666677777666 778888887777777642111 011111 24455555533221 22333445666
Q ss_pred HHHHHcchhch---HHHHHHHHhhhcC-CChhHHhHHHHHHHHHhhcChHHHHHhH-HHHHHHHHhhcCCCChhHHHHHH
Q 001584 325 TMALNLAKHVF---PPVFEFASVSCQN-ASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAAS 399 (1049)
Q Consensus 325 ~l~~~~~~~~~---~~ll~~l~~~l~~-~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~ 399 (1049)
.++-+-+...+ ..++..+...+.- ++...+..|...|..++........... ..-+|.+...+.|....||....
T Consensus 318 nisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseis 397 (550)
T KOG4224|consen 318 NISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEIS 397 (550)
T ss_pred hcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHH
Confidence 66654442221 2233334444443 3455777777777777654322222111 13467777788888888888887
Q ss_pred HHHHHhHhhhcHHHHhhh--hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccc------cc-cchHHHHHHHHHhhc
Q 001584 400 FALGQFAEYLQPEIVSHY--ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE------IL-PFLDPLMGKLLAALE 470 (1049)
Q Consensus 400 ~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~------l~-~~~~~ll~~l~~~l~ 470 (1049)
.|+..++-. +..+.++ ..++|.++..+.+.+.+||..+..+|.++++..... .. |. +.+-..|...+.
T Consensus 398 ac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~-~gi~g~L~Rfl~ 474 (550)
T KOG4224|consen 398 ACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPV-QGIQGRLARFLA 474 (550)
T ss_pred HHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcc-hhHHHHHHHHHh
Confidence 788777644 2233333 368899999999999999999999999998765321 11 22 444455555555
Q ss_pred CCCHhHHHHHHHHHHHHHHH
Q 001584 471 NSPRNLQETCMSAIGSVAAA 490 (1049)
Q Consensus 471 ~~~~~v~~~~~~~l~~l~~~ 490 (1049)
+....++.-+.++|-.+.+.
T Consensus 475 S~~~tf~hia~wTI~qLle~ 494 (550)
T KOG4224|consen 475 SHELTFRHIARWTIQQLLED 494 (550)
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555443
No 74
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.79 E-value=2.8e-08 Score=80.08 Aligned_cols=66 Identities=36% Similarity=0.606 Sum_probs=61.6
Q ss_pred HHHHHHHHhcC-CCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhcc--------CCCHHHHHHHHHHHHHHHh
Q 001584 23 AEDQIKRLAKD-PQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWA--------KLSPQLKQLVKQSLIESIT 88 (1049)
Q Consensus 23 a~~~L~~~~~~-p~~~~~l~~il~~~-~~~~~R~~a~~~l~~~i~~~w~--------~~~~~~~~~i~~~ll~~l~ 88 (1049)
||++|+++.++ |+|+..|++++.+. .++.+|++|+++||+.|.++|. .++++.++.||+.+++.|.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 78999999988 99999999999664 4899999999999999999999 9999999999999999886
No 75
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.77 E-value=9.1e-05 Score=78.11 Aligned_cols=256 Identities=14% Similarity=0.156 Sum_probs=128.7
Q ss_pred hHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHc-chhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcC
Q 001584 290 VIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNL-AKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC 368 (1049)
Q Consensus 290 ~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~-~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~ 368 (1049)
..++.+.+-.|+.+..+ .+...++..+..++... +.+.+...+..+..+++++.-..|.+|+..|..++-..
T Consensus 262 ~~q~rpfL~~wls~k~e-------mV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~ 334 (898)
T COG5240 262 LLQLRPFLNSWLSDKFE-------MVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY 334 (898)
T ss_pred HHHHHHHHHHHhcCcch-------hhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC
Confidence 33444555555554433 56666777777777654 67888888899999999999999999999999998654
Q ss_pred hHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 001584 369 AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCE 448 (1049)
Q Consensus 369 ~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~ 448 (1049)
|..+... -+-+-..++|.+ |..+.+++..+.+...++--+.+-..+|..+.-+.|.-..+. ..++..++-
T Consensus 335 P~kv~vc----N~evEsLIsd~N---r~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~---ida~rsLsl 404 (898)
T COG5240 335 PQKVSVC----NKEVESLISDEN---RTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIA---IDALRSLSL 404 (898)
T ss_pred Cceeeec----ChhHHHHhhccc---ccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEe---HHHHHHHHh
Confidence 4322110 011122223333 333445555554444333333333444445554444432221 222222222
Q ss_pred hhccccccchHH----------------HHHHHHHhhcCCCHhHHHHHHHHHHHHHH-----------------Hhhhhc
Q 001584 449 DMGEEILPFLDP----------------LMGKLLAALENSPRNLQETCMSAIGSVAA-----------------AAEQAF 495 (1049)
Q Consensus 449 ~~~~~l~~~~~~----------------ll~~l~~~l~~~~~~v~~~~~~~l~~l~~-----------------~~~~~~ 495 (1049)
.++..-..|+.- +++.+...+. ..+..++.+++.+...++ ..+..-
T Consensus 405 ~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~ 483 (898)
T COG5240 405 LFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAK 483 (898)
T ss_pred hCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCC
Confidence 222111111111 1222222111 233344444433333222 211111
Q ss_pred --cccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHH-HHHHHHhccCCCCchhhHHHHHHHHH
Q 001584 496 --IPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPP-FVEAAISGFGLEFSELREYTHGFFSN 572 (1049)
Q Consensus 496 --~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~-i~~~l~~~l~~~~~~~r~~~~~~l~~ 572 (1049)
..|...+...+. . +..-+|..|..|++.++..... +..++ +...+..++++.+.++|+.+.-++..
T Consensus 484 ~P~~yvrhIyNR~i----L---EN~ivRsaAv~aLskf~ln~~d----~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~ 552 (898)
T COG5240 484 TPGKYVRHIYNRLI----L---ENNIVRSAAVQALSKFALNISD----VVSPQSVENALKRCLNDQDDEVRDRASFLLRN 552 (898)
T ss_pred CcchHHHHHHHHHH----H---hhhHHHHHHHHHHHHhccCccc----cccHHHHHHHHHHHhhcccHHHHHHHHHHHHh
Confidence 112222222111 1 1223688889999988765532 22333 44455567888889999998777776
Q ss_pred HH
Q 001584 573 IA 574 (1049)
Q Consensus 573 l~ 574 (1049)
|-
T Consensus 553 ~~ 554 (898)
T COG5240 553 MR 554 (898)
T ss_pred hh
Confidence 64
No 76
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=1.7e-05 Score=87.56 Aligned_cols=447 Identities=17% Similarity=0.150 Sum_probs=240.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHH-hcCCCcHHHHHHHHhc---CCChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHH
Q 001584 6 ELLLIQFLMPDNDARRQAEDQIKRL-AKDPQVVPALVQHLRT---AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ 81 (1049)
Q Consensus 6 ~~ll~~~~s~d~~~r~~a~~~L~~~-~~~p~~~~~l~~il~~---~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~ 81 (1049)
-.++..+...|-+..|-....+... ..+|+........+.. ++++-+|.+|...+... . .+...+.+..
T Consensus 52 ~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l---~----v~~i~ey~~~ 124 (734)
T KOG1061|consen 52 PDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCL---R----VDKITEYLCD 124 (734)
T ss_pred HHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeE---e----ehHHHHHHHH
Confidence 3455555555666666666666443 3466654444444443 45777887775443221 0 2356677778
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhh-cccccHHHH
Q 001584 82 SLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ-TFRPHFADM 160 (1049)
Q Consensus 82 ~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~-~~~~~~~~l 160 (1049)
.+.+++.. .++.+|++++.+++.+.........-..+++.+..++.++++.+..+|+..+..+.+.-++ ........+
T Consensus 125 Pl~~~l~d-~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~ 203 (734)
T KOG1061|consen 125 PLLKCLKD-DDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQL 203 (734)
T ss_pred HHHHhccC-CChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHH
Confidence 88888884 8999999999999998875432234466888999999989999999999999999887663 212222334
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcc
Q 001584 161 QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (1049)
Q Consensus 161 ~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (1049)
...+.+.+.....+ -+...+.+ +..+.+... .. . ..+++.+...+++.+..+...+.+.+.......+.+
T Consensus 204 ~~~lL~al~ec~EW-~qi~IL~~---l~~y~p~d~-~e-a----~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~ 273 (734)
T KOG1061|consen 204 INKLLEALNECTEW-GQIFILDC---LAEYVPKDS-RE-A----EDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQV 273 (734)
T ss_pred HHHHHHHHHHhhhh-hHHHHHHH---HHhcCCCCc-hh-H----HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHH
Confidence 44444444431222 23333333 444443321 11 1 234444444455566666666666666665544443
Q ss_pred hhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhc------CChHHH------HHHHhh---------
Q 001584 241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKH------KLVIPI------LQVMCP--------- 299 (1049)
Q Consensus 241 ~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~------~~~~~i------l~~l~~--------- 299 (1049)
-...+..+-+.++.++.. .+++...++.-+.-+....|..+... +|..++ ++.+..
T Consensus 274 ~~~~~~K~~~pl~tlls~---~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~q 350 (734)
T KOG1061|consen 274 NELLFKKVAPPLVTLLSS---ESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQ 350 (734)
T ss_pred HHHHHHHhcccceeeecc---cchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHH
Confidence 333333333333333332 23555555554444444444322110 000110 011110
Q ss_pred hhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHH
Q 001584 300 LLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESV 379 (1049)
Q Consensus 300 ~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i 379 (1049)
.+.+..+-.-+-|....+.+..+++.++....+. ..++..+.+.++-.--.....++..+.-+...++.. .+.+
T Consensus 351 vl~El~eYatevD~~fvrkaIraig~~aik~e~~--~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~----~~~v 424 (734)
T KOG1061|consen 351 VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS--NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK----YESV 424 (734)
T ss_pred HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh--hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc----hhhh
Confidence 1111100001112234556667777777666533 333343333443211122223333344444433322 2345
Q ss_pred HHHHHhhcCC-CChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccch
Q 001584 380 LHIVLGALRD-PEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL 458 (1049)
Q Consensus 380 ~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~ 458 (1049)
++.+...+.. .+|..|.+-.|.+|++++.++. ...++..+++...+....||..-..+...+.-..+. --
T Consensus 425 v~~l~~~~~sl~epeak~amiWilg~y~~~i~~-----a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~----~t 495 (734)
T KOG1061|consen 425 VAILCENLDSLQEPEAKAALIWILGEYAERIEN-----ALELLESFLENFKDETAEVQLELLTAAIKLFLKKPT----ET 495 (734)
T ss_pred hhhhcccccccCChHHHHHHHHHHhhhhhccCc-----HHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCc----cH
Confidence 5555555543 5778999999999999998753 345788889999998888887665555544333322 23
Q ss_pred HHHHHHHHHh-hcC-CCHhHHHHHHHHHHHHH
Q 001584 459 DPLMGKLLAA-LEN-SPRNLQETCMSAIGSVA 488 (1049)
Q Consensus 459 ~~ll~~l~~~-l~~-~~~~v~~~~~~~l~~l~ 488 (1049)
+.+++.++.. .++ .++++|..++.-|..+.
T Consensus 496 q~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 496 QELLQGVLPLATADTDNPDLRDRGLIYWRLLS 527 (734)
T ss_pred HHHHHHHHhhhhccccChhhhhhHHHHHHHhh
Confidence 3444444443 333 45789988887666544
No 77
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.71 E-value=8.5e-08 Score=78.97 Aligned_cols=87 Identities=21% Similarity=0.338 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCC
Q 001584 394 VRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSP 473 (1049)
Q Consensus 394 vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~ 473 (1049)
.|..++.+|..++..++..+.++++.++|.++.++.|++++||..||.+|.++++..+..+.+|++++++.|.+...+.+
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 47889999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred HhHHHHH
Q 001584 474 RNLQETC 480 (1049)
Q Consensus 474 ~~v~~~~ 480 (1049)
+.||..+
T Consensus 82 ~~Vr~~a 88 (97)
T PF12755_consen 82 ENVRSAA 88 (97)
T ss_pred hhHHHHH
Confidence 9998877
No 78
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.70 E-value=4.4e-06 Score=95.56 Aligned_cols=300 Identities=15% Similarity=0.164 Sum_probs=194.0
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccC--
Q 001584 160 MQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP-- 237 (1049)
Q Consensus 160 l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~-- 237 (1049)
+++++..+++.-.....+..|+..|..+..+..++ ..+..++..+..++.+...+++..|+..+.+++..-
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de-------~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~ 495 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDE-------VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRD 495 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH-------HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccC
Confidence 45666666665455678999999999999998643 223444555555678888899999999999876532
Q ss_pred -CcchhhhHHH-HHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHH-HHhhhhccCCCCCCCCCCc
Q 001584 238 -APLLGDSVKS-IVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQ-VMCPLLAESNEAGEDDDLA 314 (1049)
Q Consensus 238 -~~~~~~~~~~-l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~-~l~~~l~~~~~~~~d~~~~ 314 (1049)
++.=...+++ +++.+-....+. ....+|..-...+..+++..... +.-... ....++.+.+.+ -..+ .
T Consensus 496 ~~~~daniF~eYlfP~L~~l~~d~-~~~~vRiayAsnla~LA~tA~rF------le~~q~~~~~g~~n~~nse-t~~~-~ 566 (1431)
T KOG1240|consen 496 IPPSDANIFPEYLFPHLNHLLNDS-SAQIVRIAYASNLAQLAKTAYRF------LELTQELRQAGMLNDPNSE-TAPE-Q 566 (1431)
T ss_pred CCcccchhhHhhhhhhhHhhhccC-ccceehhhHHhhHHHHHHHHHHH------HHHHHHHHhcccccCcccc-cccc-c
Confidence 2211222322 223332333322 34567777667777777543221 110100 001111111110 0000 0
Q ss_pred HHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhH
Q 001584 315 PDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFV 394 (1049)
Q Consensus 315 ~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~v 394 (1049)
........ +...+-+....++.++.+.+|.+-+..++-++.-.++. ..=+-|++.+...|+|.+++.
T Consensus 567 ~~~~~~~~-----------L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~--ksND~iLshLiTfLNDkDw~L 633 (1431)
T KOG1240|consen 567 NYNTELQA-----------LHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE--KSNDVILSHLITFLNDKDWRL 633 (1431)
T ss_pred ccchHHHH-----------HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc--ccccchHHHHHHHhcCccHHH
Confidence 01111111 11223333445567777889999988887777644332 123467899999999999999
Q ss_pred HHHHHHHHHHhHhhhcHH-HHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCC
Q 001584 395 RGAASFALGQFAEYLQPE-IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSP 473 (1049)
Q Consensus 395 r~~a~~~l~~l~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~ 473 (1049)
|.+.+..+..++-..+.. ..+| ++|.+.++|.|..+.|-..|+.++..+++.-- --.+++-++++....++-+++
T Consensus 634 R~aFfdsI~gvsi~VG~rs~sey---llPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l-l~K~~v~~i~~~v~PlL~hPN 709 (1431)
T KOG1240|consen 634 RGAFFDSIVGVSIFVGWRSVSEY---LLPLLQQGLTDGEEAVIVSALGSLSILIKLGL-LRKPAVKDILQDVLPLLCHPN 709 (1431)
T ss_pred HHHHHhhccceEEEEeeeeHHHH---HHHHHHHhccCcchhhHHHHHHHHHHHHHhcc-cchHHHHHHHHhhhhheeCch
Confidence 999999998888777654 4445 89999999999999999999999999987631 113788899999999999999
Q ss_pred HhHHHHHHHHHHHHHHHhh
Q 001584 474 RNLQETCMSAIGSVAAAAE 492 (1049)
Q Consensus 474 ~~v~~~~~~~l~~l~~~~~ 492 (1049)
.=+|..++..|..++...+
T Consensus 710 ~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 710 LWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 9999999999999887665
No 79
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=0.00078 Score=73.59 Aligned_cols=251 Identities=13% Similarity=0.163 Sum_probs=160.3
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccC
Q 001584 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (1049)
Q Consensus 158 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~ 237 (1049)
.++.+=+.++|++ +.+.+|..|+-.+.++....++ .++.-+|.+.+- +.++|+.+...|..++++++...
T Consensus 143 RDLa~Dv~tLL~s-skpYvRKkAIl~lykvFLkYPe-----Alr~~FprL~Ek----LeDpDp~V~SAAV~VICELArKn 212 (877)
T KOG1059|consen 143 RDLADDVFTLLNS-SKPYVRKKAILLLYKVFLKYPE-----ALRPCFPRLVEK----LEDPDPSVVSAAVSVICELARKN 212 (877)
T ss_pred HHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHhhhH-----hHhhhHHHHHHh----ccCCCchHHHHHHHHHHHHHhhC
Confidence 4456666777887 8899999999888887655432 245556666654 67889999999999999999998
Q ss_pred CcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHH
Q 001584 238 APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDR 317 (1049)
Q Consensus 238 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~ 317 (1049)
|.-+-+.-|.++..|.... ..-+-...+.++..+.-..|..-++ +++++.+.+ ... ..-.
T Consensus 213 PknyL~LAP~ffkllttSs-----NNWmLIKiiKLF~aLtplEPRLgKK--Lieplt~li----~sT---------~AmS 272 (877)
T KOG1059|consen 213 PQNYLQLAPLFYKLLVTSS-----NNWVLIKLLKLFAALTPLEPRLGKK--LIEPITELM----EST---------VAMS 272 (877)
T ss_pred CcccccccHHHHHHHhccC-----CCeehHHHHHHHhhccccCchhhhh--hhhHHHHHH----Hhh---------HHHH
Confidence 8866666666666554322 2223444555666665544443222 334333322 111 0000
Q ss_pred HHHHHHHHHHH-----Hcc--hhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCC
Q 001584 318 AAAEVIDTMAL-----NLA--KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDP 390 (1049)
Q Consensus 318 ~a~~~l~~l~~-----~~~--~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~ 390 (1049)
...+|+..+.. ..+ .......++.+..++.+.|+..|+-++.+++.++...+..+..| -+.++++|.|.
T Consensus 273 LlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~----kdlIlrcL~Dk 348 (877)
T KOG1059|consen 273 LLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH----KDLILRCLDDK 348 (877)
T ss_pred HHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh----HHHHHHHhccC
Confidence 11122222221 121 23445677777788899999999999999999999888777666 45788999999
Q ss_pred ChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCCh-HHHHHHHHHHHHHHH
Q 001584 391 EQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESD-EVKEKSYYALAAFCE 448 (1049)
Q Consensus 391 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~-~v~~~a~~~l~~l~~ 448 (1049)
++.+|..|+..+..+... +.+..++..|+..+...+. ..|...+.-+-.+|.
T Consensus 349 D~SIRlrALdLl~gmVsk------kNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS 401 (877)
T KOG1059|consen 349 DESIRLRALDLLYGMVSK------KNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICS 401 (877)
T ss_pred CchhHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhh
Confidence 999999999988777653 2344566666665554433 455544444444443
No 80
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.68 E-value=1.4e-05 Score=86.90 Aligned_cols=380 Identities=12% Similarity=0.160 Sum_probs=205.3
Q ss_pred cCccCchhhhhHHHHhhccCCCCCccCCCCCchhhhccCCCCCCCcchhhcccccceeeeccchhhHHHHHHHHHHHHHH
Q 001584 579 DGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALH 658 (1049)
Q Consensus 579 ~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~ 658 (1049)
.++.|++..++..|+..+..... .+-+...+++-.+...
T Consensus 18 ~di~p~~~~ll~~Lf~~i~~~~s-----------------------------------------~ENeylMk~iMRvl~~ 56 (435)
T PF03378_consen 18 ADIQPFAQQLLQNLFALIEKPGS-----------------------------------------AENEYLMKCIMRVLSV 56 (435)
T ss_dssp GGTTCCHHHHHHHHHHHHHTT-S-----------------------------------------TC-HHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHhcCCC-----------------------------------------ccchHHHHHHHHHHHH
Confidence 67889999999999988863211 0233456677777677
Q ss_pred hhhhchhhHHHHHHHHHhhhc----C-CChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHhhhCC
Q 001584 659 TKSSYAPFLEESLKILVRHAS----Y-FHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDD 733 (1049)
Q Consensus 659 ~~~~~~~~~~~~~~~l~~~~~----~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 733 (1049)
.++...|+...+++.+...+. . .++.---...++++.+++... ...++.+..+-+.++|.+...+.++
T Consensus 57 ~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~------~~~~~~v~~~E~~L~P~f~~ILq~d- 129 (435)
T PF03378_consen 57 LQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVC------EADPEAVSQFEEALFPPFQEILQQD- 129 (435)
T ss_dssp STTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-------GGGHH---HHHHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhcc------CCChhHHHHHHHHHHHHHHHHHHHH-
Confidence 788888998888887766532 2 234444566677777776532 1244556677778888888877665
Q ss_pred hHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhHHHHHHHHhHHHHHHHH
Q 001584 734 DKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKS 813 (1049)
Q Consensus 734 ~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 813 (1049)
-.+..-.++.-++-+++......+++....+++. |-...-+... .. +.++.+++..+.+.
T Consensus 130 V~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~----Ll~p~lWe~~---------------gn-iPalvrLL~a~i~k 189 (435)
T PF03378_consen 130 VQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPP----LLSPALWERR---------------GN-IPALVRLLQAYIKK 189 (435)
T ss_dssp -TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHH----HTSGGGGGST---------------TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHH----HcCcchhccC---------------CC-cCcHHHHHHHHHHh
Confidence 3355566777777777655423333333333333 3333222111 11 23677888888888
Q ss_pred hCCChH--HHHHHHHHHHHHhhccCCCcccchhhhHhHHHHHhhcCCc-hhhcHhhhHHHHHHhcCCC-ChHhHHHHHHH
Q 001584 814 MGPHFA--PIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSP-IAAYVDRVMPLVLKELASP-DAMNRRNAAFC 889 (1049)
Q Consensus 814 ~~~~~~--~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~~~i~~~l~~~l~~~-~~~vr~~a~~~ 889 (1049)
.+..+. +++..++.++-+++.++.. -..++.++..++.+++.. ..||++.++..++.++++. ....++.-+..
T Consensus 190 ~~~~i~~~~~l~~iLgvFQkLi~sk~~---D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F 266 (435)
T PF03378_consen 190 DPSFIVANNQLEPILGVFQKLIASKAN---DHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVF 266 (435)
T ss_dssp HGGG----S-CHHHHHHHHHHHT-TTC---HHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHH
T ss_pred CchhhcchhhHHHHHHHHHHHHCCCCc---chHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHH
Confidence 776553 4666777766677765543 367899999999999886 7899999999999999854 44444444444
Q ss_pred HHHHHhhcCcc-hhh--------HHHHHHHh-hhhhhCCCCCChhHHhhHHHHHHHHHHhCCCCCChhhHHHHHHhhCCC
Q 001584 890 VGELCKNGGES-ALK--------YYGDILRG-LYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPL 959 (1049)
Q Consensus 890 lg~l~~~~~~~-~~~--------~~~~~l~~-L~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~l~~~l~~lp~ 959 (1049)
++.++...|.. +.. .+..+++. +.+-++ +-....=|.-++-++.+++...+... .+.-
T Consensus 267 ~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~-k~~~~~erKi~~vGltkLL~es~~~~--~~~~--------- 334 (435)
T PF03378_consen 267 LSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQ-KVSGPIERKICAVGLTKLLCESPAFL--SEYS--------- 334 (435)
T ss_dssp HHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGG-G--SHHHHHHHHHHHHHHHHSSTTHH--HH-C---------
T ss_pred HHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchh-hcCCcchhhHHHHHHHHHHhccHhhh--hHHH---------
Confidence 55554443332 111 12222221 111111 00111223334445556554332211 1101
Q ss_pred CCcHHhhHHHHHHHHHHHhhCChhhc---chhhHHHHH----HHHHhc----------CCC-CChHHHHHHHHHHHHHHH
Q 001584 960 KEDFEESMAVYNCISTLVLSSNPQIL---SLVPELVNL----FAEVVV----------SPE-ESSEVKSQVGMAFSHLIS 1021 (1049)
Q Consensus 960 ~~d~~e~~~~~~~l~~l~~~~~~~~~---~~~~~i~~~----~~~~~~----------~~~-~~~~~~~~~~~~l~~l~~ 1021 (1049)
..-......+..++......-. ......-+. +...+. ++. +-.+.+.-+.+.+..+.+
T Consensus 335 ----~~w~~ll~~Ll~ll~~p~~~~~~~~e~~~~~~d~~~~gy~~~fs~L~~a~~~~~Dp~~~i~d~~~~~~~~L~~~~~ 410 (435)
T PF03378_consen 335 ----QLWPPLLEALLKLLERPPEASAADEEDFIDEEDVEDIGYQVSFSKLAFAGKKPRDPLPEIPDPKQYLAQSLSKLSQ 410 (435)
T ss_dssp ----HHHHHHHHHHHHHHHTTSTT-S----S-----------TT-GGG--GGG------S-TTTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHcCCccccccccccccccccchhcccchhhHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 1112233444444433221110 010000000 000000 000 124688889999999999
Q ss_pred HhhhhHHHHHhc-CCHHHHHHHHhh
Q 001584 1022 LYGQQMQPLLSN-LSPAHATALAAF 1045 (1049)
Q Consensus 1022 ~~~~~~~~~~~~-l~~~~~~~l~~~ 1045 (1049)
.+|..+..++++ |+++.|..|+.|
T Consensus 411 ~~~G~~~~~i~~~l~~~~~~~L~~y 435 (435)
T PF03378_consen 411 AHPGKIPPLIQQQLPPEAQQALQQY 435 (435)
T ss_dssp HTTSSHHHHHGGGS-HHHHHHHHH-
T ss_pred hCCCchHHHHHhhCCHHHHHHhccC
Confidence 999999888876 999999999976
No 81
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.67 E-value=0.00065 Score=86.98 Aligned_cols=569 Identities=17% Similarity=0.183 Sum_probs=296.4
Q ss_pred cHHHHHHHHHHHHHHHcc---hhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCC
Q 001584 314 APDRAAAEVIDTMALNLA---KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDP 390 (1049)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~---~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~ 390 (1049)
..-..+..+++.++...+ .+.+......+.+++.+.....|.+|...+...+...+....+++..++..++..+.|+
T Consensus 108 ~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~~~ 187 (2341)
T KOG0891|consen 108 EVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALRDP 187 (2341)
T ss_pred HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhccCC
Confidence 455566666766665444 34455555566666655556678999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhHhhhcHHHH----hhhhhHHHHHHHhccCCChH------------------------HHHHHHHH
Q 001584 391 EQFVRGAASFALGQFAEYLQPEIV----SHYESVLPCILNALEDESDE------------------------VKEKSYYA 442 (1049)
Q Consensus 391 ~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~ll~~l~~~l~~~~~~------------------------v~~~a~~~ 442 (1049)
++.+|..|+.++.......+.... +.+...+...-..+..+... .+...+..
T Consensus 188 ~~~i~~~a~~al~~~~~~~~~~~~~~~~~~~~rcvd~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 267 (2341)
T KOG0891|consen 188 KPAIRLQACSALHAVLSSLAQREAKLKPQWYQRCVDEARHGLSSDGVKIHASLLVYNELLRISDPFLEKYDSTCVRQAKG 267 (2341)
T ss_pred ChhhhHHHHHHHHHHHhhhhhccchhhhHHHHHHHHhccccccchHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999988776654331 11222222221222221100 11100000
Q ss_pred --HH-----HHHHh--------hccc-cccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Q 001584 443 --LA-----AFCED--------MGEE-ILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELL 506 (1049)
Q Consensus 443 --l~-----~l~~~--------~~~~-l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l 506 (1049)
+. ..+.. .+.. -..|+...+..++..+. +....++..|+.++-+.+..+.+|...+...+
T Consensus 268 ~~lk~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~----~~~~~~~~~i~~ia~al~~~~~~~~~~~~~~i 343 (2341)
T KOG0891|consen 268 KLLKSIVIRMTLSQILPLLAAFNPAKFQVKYLHTEMDHLLSILR----KEKTRAFVSIGEIAVALGSSMSPYLSNILDHI 343 (2341)
T ss_pred HHhccccHHHHHHhccHHHhhhhhhhhHHHHHHHHHHHHHHhhh----ccchhHHHHHHHHHHHhhhhhhhhhcchhhhh
Confidence 00 00000 0000 00234444444444443 22266777788888888888888776655555
Q ss_pred HHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchh
Q 001584 507 KIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLP 586 (1049)
Q Consensus 507 ~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~ 586 (1049)
.+.+...+-...+.-...+.|++.++.++++..+......|+..+...... .....++-.++..++ +...
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~il~~~~~~~~~------~~l~e~l~~l~~rl~----~l~~ 413 (2341)
T KOG0891|consen 344 RQTLPTKDLARKKFEKSVFTCIGLLASALGPADQKDLNKDILEQMFKCTLS------DSLLERLFILSQRIP----KLGQ 413 (2341)
T ss_pred hhcchhhhHHHHhcchhHHHHHHHHhhccCHHHHHhHHHHHHHHHhcCCch------HHHHHHHHHHHHhcc----chhh
Confidence 544432221111111234678888888898877776667777776554322 333344455554443 3344
Q ss_pred hhhHHHHhhccCC-CCCccCCCCCchhhhccCCCCCCCcchhhcccccceeeeccc-hhhHHHHHHHHHHHHHHhhhhch
Q 001584 587 LVVPLAFSSCNLD-DGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGV-LDEKAAATQALGLFALHTKSSYA 664 (1049)
Q Consensus 587 ~i~~~ll~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~k~~a~~~l~~~~~~~~~~~~ 664 (1049)
.+.+.++.....- -+... +.-.++..... --.+.. ..-.++. ...-..|.++++.+.... ....
T Consensus 414 ~i~~rll~~~~~vl~~~a~-------~~~~~~~vl~~----~~~p~~--~~~~~~~~~~~~~~a~~~l~~~~~~~-~~~~ 479 (2341)
T KOG0891|consen 414 SIQDRLLNMTSQVLSGKAF-------IQPGQFTVLPK----LAIPKA--ILQKTGDSTDDIQLAFKTLGGFKFSG-YSLT 479 (2341)
T ss_pred HHHHHHHHHHHHHHhCccc-------cCccccCccch----hcccch--hhhhcccccHHHHHHHHHHhhhhhhh-hhHH
Confidence 4444444332100 00000 00000000000 000000 0000000 011334666666553332 1122
Q ss_pred hhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q 001584 665 PFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTS 744 (1049)
Q Consensus 665 ~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 744 (1049)
.++..++ ...+...++++|..+..++..++.-.... ....+..+ ++...++.+++.....+.++..+...+..
T Consensus 480 ~~~~~~~---~~~~~~~~~e~r~~~~l~~~~ll~~~~~~---~~~~~~~~-~~v~~vl~~ll~~aia~~~~~i~~~v~~~ 552 (2341)
T KOG0891|consen 480 LFVQQCV---DSYLEADDSEIRKNAALTCCELLKYDIIC---SQTSPHAL-QVVKEVLSALLTVAIADTDPDIRIRVLSS 552 (2341)
T ss_pred HHHHHHH---HHHHhcccHHHHHHHHHHHHHHHhhhhhh---hcccchHH-HHHHHHHHHHHHHhccCCCcchhhhHHhh
Confidence 2233322 22355677889999988777766543321 01122222 45666677776666566666665554444
Q ss_pred HHHHH-H----------------------------HhCCccc--HHH-HHHHHHHHHHHHHhhhhhcCCCCCCCCCcccc
Q 001584 745 IVEII-N----------------------------DYGYMAV--EPY-MSRLVDATLLLLREESTCQQPDNDSDIEDDDD 792 (1049)
Q Consensus 745 l~~~i-~----------------------------~~g~~~~--~~~-~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 792 (1049)
+..-. . ..|.... +.+ ++.+-...+..++....
T Consensus 553 l~~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~--------------- 617 (2341)
T KOG0891|consen 553 LNERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEF--------------- 617 (2341)
T ss_pred hccchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhh---------------
Confidence 43000 0 0010000 000 00110011111110000
Q ss_pred chhhHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhccCCCcccchhhhHhHHHHHhhcCCchhhcHhhhHHHHH
Q 001584 793 TAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVL 872 (1049)
Q Consensus 793 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~ 872 (1049)
+ .-......++..++.+......-..+|+..++..+...+.+.++ .+-..++.++++++...|.....+++..++.+.
T Consensus 618 s-g~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s-~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~ 695 (2341)
T KOG0891|consen 618 S-GMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSS-GVEKAVLETIGELCAVGGEEMVKWVDELFSLII 695 (2341)
T ss_pred c-chHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccch-hhHHHHHHHHHHHHHhccchhhhccchHHHHHH
Confidence 0 00001111222223333333334556777777777777777665 567789999999999999888888888899999
Q ss_pred HhcCCCC-hHhHHHHHHHHHHHHhhcCcchhhH--HHHHHHhhhhhhCCCCCChhHHhhHHHHHHH
Q 001584 873 KELASPD-AMNRRNAAFCVGELCKNGGESALKY--YGDILRGLYPLFGDSEPDDAVRDNAAGAVAR 935 (1049)
Q Consensus 873 ~~l~~~~-~~vr~~a~~~lg~l~~~~~~~~~~~--~~~~l~~L~~~l~~~~~~~~~~~~a~~~l~~ 935 (1049)
+.+.+.+ ..-|.++..++|.+....+-.+.|| +|.++..+.+.+. .+....++..++...|.
T Consensus 696 ~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~-te~~~~ir~~~v~~~g~ 760 (2341)
T KOG0891|consen 696 KMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILK-TEQSSTIRREAIRLLGL 760 (2341)
T ss_pred HHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHh-HhhhhHHHHHHHHHhhh
Confidence 9888764 5678889999999999887666664 5667766665543 22234444445544443
No 82
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.65 E-value=2.4e-06 Score=97.67 Aligned_cols=300 Identities=16% Similarity=0.138 Sum_probs=187.4
Q ss_pred hHHHHHHhccC-CCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChh--
Q 001584 119 LLPFLFQFSQS-EQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA-- 195 (1049)
Q Consensus 119 ll~~l~~~l~~-~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~-- 195 (1049)
+++.+..++.+ ...+.+..|+.++..+.....+. ..+..++|.+..++.| +...||..|+.++..++....+-.
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de--~~LDRVlPY~v~l~~D-s~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDE--VKLDRVLPYFVHLLMD-SEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH--HHHhhhHHHHHHHhcC-chHHHHHHHHHHHHHHHhhccCCCcc
Confidence 45666665554 23466778899888888776642 4578899999999999 999999999999999876654321
Q ss_pred hHHHHHhhhHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHH
Q 001584 196 EVVKFREFIPSILNVSRQCLAS-GEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIIS 274 (1049)
Q Consensus 196 ~~~~~~~~~~~ll~~l~~~l~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~ 274 (1049)
+...|.+++ +.-+..++.+ ...-++..-..+|..++.....|+.-....=...+ ...+ +.+
T Consensus 500 daniF~eYl---fP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~---~n~~--nse---------- 561 (1431)
T KOG1240|consen 500 DANIFPEYL---FPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGM---LNDP--NSE---------- 561 (1431)
T ss_pred cchhhHhhh---hhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhccc---ccCc--ccc----------
Confidence 122233333 3333334444 33345555567777776654443322111000000 1111 110
Q ss_pred HHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc-hhchHHHHHHHHhhhcCCChhH
Q 001584 275 WLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKY 353 (1049)
Q Consensus 275 ~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~-~~~~~~ll~~l~~~l~~~~~~~ 353 (1049)
+..+.... ...+.+...+-+....++.+.+. -++++..+.+..++.-+| ..-=..+++.+..++++.||..
T Consensus 562 t~~~~~~~-~~~~~L~~~V~~~v~sLlsd~~~-------~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~L 633 (1431)
T KOG1240|consen 562 TAPEQNYN-TELQALHHTVEQMVSSLLSDSPP-------IVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRL 633 (1431)
T ss_pred cccccccc-hHHHHHHHHHHHHHHHHHcCCch-------HHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHH
Confidence 00000000 00000111122223334444332 678887788888888888 3344667888888899999999
Q ss_pred HhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHH-HhhhhhHHHHHHHhccCCC
Q 001584 354 REAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI-VSHYESVLPCILNALEDES 432 (1049)
Q Consensus 354 r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~ll~~l~~~l~~~~ 432 (1049)
|.+-...+.-++-..+.. ..-+-++|.+.++|.|+.+.|-..|+.++..+++..- + +.++-+++..+...|-.++
T Consensus 634 R~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l--l~K~~v~~i~~~v~PlL~hPN 709 (1431)
T KOG1240|consen 634 RGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL--LRKPAVKDILQDVLPLLCHPN 709 (1431)
T ss_pred HHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc--cchHHHHHHHHhhhhheeCch
Confidence 988877776554433221 1123578999999999999999999999998887531 2 3456677777777888999
Q ss_pred hHHHHHHHHHHHHHHHhhc
Q 001584 433 DEVKEKSYYALAAFCEDMG 451 (1049)
Q Consensus 433 ~~v~~~a~~~l~~l~~~~~ 451 (1049)
.-||..++..+..+.+.++
T Consensus 710 ~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 710 LWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 9999999999999988764
No 83
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.65 E-value=4.1e-05 Score=78.84 Aligned_cols=508 Identities=14% Similarity=0.127 Sum_probs=269.3
Q ss_pred CChHHHHHHHHHHHHhhcccCChhhHHHHHhhh------------HHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCc
Q 001584 172 TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFI------------PSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP 239 (1049)
Q Consensus 172 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~------------~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 239 (1049)
...+||..|+.++......++.. .+..++ |+++.. .+++.++..+.-++.++..+.+....
T Consensus 8 ~~akvr~~al~~~~~~~~~~~~~----~~ygyw~~~~pd~~~~g~p~l~~l---~lkd~~~~~ra~alqv~~~~l~gsk~ 80 (728)
T KOG4535|consen 8 YQAKVRQGALVCFLSTIKSIEKK----VLYGYWSAFIPDTPELGSPSLMTL---TLKDPSPKTRACALQVLSAILEGSKQ 80 (728)
T ss_pred HHHHHHhhHHHHHHHHHhhhhhh----hhhceeeeecCCCCCCCCceeeEE---ecCCCChhHHHHHHHHHHHHHHhhHH
Confidence 45679999999998887665422 122222 223222 24667777888888887777654332
Q ss_pred ch-----------hh-------hHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhh
Q 001584 240 LL-----------GD-------SVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLL 301 (1049)
Q Consensus 240 ~~-----------~~-------~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l 301 (1049)
|+ .+ .+..+...++.++... ..+.+-.+++.++..++...|-.-.+..++..+...+-+++
T Consensus 81 fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e-~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i 159 (728)
T KOG4535|consen 81 FLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAE-SSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYI 159 (728)
T ss_pred HHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh
Confidence 22 22 2233344444444433 35566778889999998877654445556667777777777
Q ss_pred ccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhh----------cCCChhHHhHHHHHHHHHhhcChHH
Q 001584 302 AESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSC----------QNASPKYREAAVTAIGIISEGCAEW 371 (1049)
Q Consensus 302 ~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l----------~~~~~~~r~~al~~l~~i~~~~~~~ 371 (1049)
...|. .++..+...++.+... ....|.+--.+.... +.++|..+..+--++....++.+..
T Consensus 160 ~~~d~-------~v~vs~l~~~~~~v~t--~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~ 230 (728)
T KOG4535|consen 160 RHKDV-------NVRVSSLTLLGAIVST--HAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKG 230 (728)
T ss_pred hcCCC-------ChhhHHHHHHHHHHhc--CCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccC
Confidence 76655 6777777777766543 223333333332222 2235555544444444444442211
Q ss_pred HH-Hh-H--------------HHHHHHHH---hhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCC
Q 001584 372 MK-EK-L--------------ESVLHIVL---GALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES 432 (1049)
Q Consensus 372 ~~-~~-l--------------~~i~~~l~---~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~ 432 (1049)
-. ++ + .-...-.. ..+..|+ .+|..++..|..++.+++ ..+-++-++...+..++.+..
T Consensus 231 ~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps-~~rle~~qvl~~~a~~~~-~~~~~~~~l~RvI~~~~~~~~ 308 (728)
T KOG4535|consen 231 SSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPS-PMRLEALQVLTLLARYFS-MTQAYLMELGRVICKCMGEAD 308 (728)
T ss_pred CCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCc-hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCCCC
Confidence 00 00 0 00111222 2333444 589999999999999885 356678889999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhcccccc--chHHH-HHHHHHhh----------cCCCHhHHHHHHHHHHHHHHHhhhhccccH
Q 001584 433 DEVKEKSYYALAAFCEDMGEEILP--FLDPL-MGKLLAAL----------ENSPRNLQETCMSAIGSVAAAAEQAFIPYA 499 (1049)
Q Consensus 433 ~~v~~~a~~~l~~l~~~~~~~l~~--~~~~l-l~~l~~~l----------~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~ 499 (1049)
+.++..+..++..+.........| .-.++ ...+...+ ++..+..+.....+++++.......|..--
T Consensus 309 p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~ 388 (728)
T KOG4535|consen 309 PSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDR 388 (728)
T ss_pred hHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcc
Confidence 999999999998887665422211 11111 11122221 122344566666666666554444444333
Q ss_pred HHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHccc
Q 001584 500 ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLED 579 (1049)
Q Consensus 500 ~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~ 579 (1049)
.+..+.+..-. .+.++.-.+..|+..++...-.-|...-..+.....+.++..+.+..-..|..+...+|+|...+-.
T Consensus 389 ~T~~~~Fl~GC--~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~ 466 (728)
T KOG4535|consen 389 QTLCITFLLGC--NDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIV 466 (728)
T ss_pred hhhhHHHHhcc--cchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHc
Confidence 34444433322 2333333466666665543221111111122233444445555544455777788888888877654
Q ss_pred CccC---chhhh----hHHHHhhccCCCCCccCCCCCchhhhccCCCCCCCcchhhcccccceeeeccchhhHHHHHHHH
Q 001584 580 GFAQ---YLPLV----VPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQAL 652 (1049)
Q Consensus 580 ~~~~---~l~~i----~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l 652 (1049)
.... +-..+ +..++......+ .+. . .+|..|.++|
T Consensus 467 ~~Ps~~s~~eR~sg~ll~~~~~~A~~~~--------Ad~---------------------------d---kV~~navraL 508 (728)
T KOG4535|consen 467 NMPTPDSFQERFSGLLLLKMLRSAIEAS--------ADK---------------------------D---KVKSNAVRAL 508 (728)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhh--------hhh---------------------------h---hhhhHHHHHH
Confidence 4432 22222 233332221100 000 0 2577788888
Q ss_pred HHHHHHhhhhchhhHHHHHHHHHh-hhc----CCChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHH
Q 001584 653 GLFALHTKSSYAPFLEESLKILVR-HAS----YFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIR 727 (1049)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~l~~-~~~----~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 727 (1049)
+.+...+.....+-+..+++.-.. +.. ...-.||..++.+++.+.+.-.--+. -.++-+.+++.+..
T Consensus 509 gnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq--------~~~wA~~~F~~L~~ 580 (728)
T KOG4535|consen 509 GNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQ--------TAPWASQAFNALTS 580 (728)
T ss_pred hhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccccc--------CCCchHHHHHHHHH
Confidence 887665543333444444443222 222 23346899999999999864210010 11233455566655
Q ss_pred HhhhCChHHHHHHHHHHHH
Q 001584 728 TMTEDDDKDVVAQACTSIV 746 (1049)
Q Consensus 728 ~l~~~~~~~~~~~~~~~l~ 746 (1049)
.+.+..+-.++..+..++.
T Consensus 581 Lv~~~~NFKVRi~AA~aL~ 599 (728)
T KOG4535|consen 581 LVTSCKNFKVRIRAAAALS 599 (728)
T ss_pred HHHHhccceEeehhhhhhc
Confidence 5555444445554444443
No 84
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=2.1e-05 Score=81.89 Aligned_cols=154 Identities=18% Similarity=0.216 Sum_probs=127.5
Q ss_pred hcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHH
Q 001584 346 CQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCIL 425 (1049)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~ 425 (1049)
..+..|+.|......++.+.....-.-.+.+.+++..+.....||+..+|..|+.+|+...+..+.....|...++..++
T Consensus 226 ~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii 305 (533)
T KOG2032|consen 226 ITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAII 305 (533)
T ss_pred cchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHH
Confidence 44567888877776666665432111124577888888899999999999999999999999988888899999999999
Q ss_pred HhccCC-ChHHHHHHHHHHHHHHHhh-ccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhccccH
Q 001584 426 NALEDE-SDEVKEKSYYALAAFCEDM-GEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYA 499 (1049)
Q Consensus 426 ~~l~~~-~~~v~~~a~~~l~~l~~~~-~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~ 499 (1049)
.+|-|+ +..|+-.++.+|..+.+.. ...+.+|+-++--.+.+.+.+.++++|..++...|.++...|..-..++
T Consensus 306 ~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~F 381 (533)
T KOG2032|consen 306 RGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFF 381 (533)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhh
Confidence 988776 5789999999999999887 5678899999999999999999999999999999999998876555444
No 85
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=0.00044 Score=75.46 Aligned_cols=260 Identities=14% Similarity=0.115 Sum_probs=168.9
Q ss_pred CCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCCh
Q 001584 115 EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDG 194 (1049)
Q Consensus 115 ~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~ 194 (1049)
--.++-+.++.++++..+.+|..|+.++..++..+|+.+.+.++ -+..-|.| +++.|..+|...++.+++.-+.+
T Consensus 141 LARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~Fp----rL~EkLeD-pDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 141 LARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFP----RLVEKLED-PDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHH----HHHHhccC-CCchHHHHHHHHHHHHHhhCCcc
Confidence 34567888999999999999999999999999888877665554 45566788 99999999999999999877543
Q ss_pred hhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHH
Q 001584 195 AEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIIS 274 (1049)
Q Consensus 195 ~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~ 274 (1049)
+-.+-|.+...+ ..+.|.-.....++.+..+....|.+-+..++.+.+.+ .+. .......|++.
T Consensus 216 -----yL~LAP~ffkll---ttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li----~sT----~AmSLlYECvN 279 (877)
T KOG1059|consen 216 -----YLQLAPLFYKLL---VTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELM----EST----VAMSLLYECVN 279 (877)
T ss_pred -----cccccHHHHHHH---hccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHH----Hhh----HHHHHHHHHHH
Confidence 334445555553 23345556777888888888888887666666655543 211 12223345666
Q ss_pred HHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHH
Q 001584 275 WLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYR 354 (1049)
Q Consensus 275 ~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r 354 (1049)
+++.. +......--...++.+++.|..--+ |+|.+.+..+..++..+...-+. .+......+...+.+.|...|
T Consensus 280 TVVa~--s~s~g~~d~~asiqLCvqKLr~fie---dsDqNLKYlgLlam~KI~ktHp~-~Vqa~kdlIlrcL~DkD~SIR 353 (877)
T KOG1059|consen 280 TVVAV--SMSSGMSDHSASIQLCVQKLRIFIE---DSDQNLKYLGLLAMSKILKTHPK-AVQAHKDLILRCLDDKDESIR 353 (877)
T ss_pred Hheee--hhccCCCCcHHHHHHHHHHHhhhhh---cCCccHHHHHHHHHHHHhhhCHH-HHHHhHHHHHHHhccCCchhH
Confidence 65532 1111111112234444444433222 23447888888888887766553 334455666677889999999
Q ss_pred hHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCCh-hHHHHHHHHHHHhHh
Q 001584 355 EAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQ-FVRGAASFALGQFAE 407 (1049)
Q Consensus 355 ~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~-~vr~~a~~~l~~l~~ 407 (1049)
--|+..+..++.. .++..|+..+...+...+. ..|...+.-+-.+|.
T Consensus 354 lrALdLl~gmVsk------kNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS 401 (877)
T KOG1059|consen 354 LRALDLLYGMVSK------KNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICS 401 (877)
T ss_pred HHHHHHHHHHhhh------hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhh
Confidence 9999888777653 5677777777776654333 555554444444443
No 86
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=0.00025 Score=78.59 Aligned_cols=504 Identities=15% Similarity=0.151 Sum_probs=273.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHH-HHHhcCCCcHHHHHHHHhc--CCChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHH
Q 001584 7 LLLIQFLMPDNDARRQAEDQI-KRLAKDPQVVPALVQHLRT--AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSL 83 (1049)
Q Consensus 7 ~ll~~~~s~d~~~r~~a~~~L-~~~~~~p~~~~~l~~il~~--~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~~l 83 (1049)
.+-.++.|..++.|+.|-... ..+.--.+.-..+-.++.. ..+.+.+.+.-.++.++-. -|+ +..-...+.+
T Consensus 17 elks~l~s~~~~kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~-~~P----~~a~~avnt~ 91 (734)
T KOG1061|consen 17 ELKSQLNSQSKEKRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAK-GKP----DLAILAVNTF 91 (734)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhc-cCc----hHHHhhhhhh
Confidence 344444555556777776665 3444334433333333332 3467888888877777632 222 2223333334
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHH
Q 001584 84 IESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQAL 163 (1049)
Q Consensus 84 l~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~ 163 (1049)
+.-.. ++++.+|..+....+.+- .+ ..|..+..-+...+++.++.+|..+..+...+...-++. .+-..+++.
T Consensus 92 ~kD~~-d~np~iR~lAlrtm~~l~---v~-~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~--~~~~gl~~~ 164 (734)
T KOG1061|consen 92 LKDCE-DPNPLIRALALRTMGCLR---VD-KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDL--VEDSGLVDA 164 (734)
T ss_pred hccCC-CCCHHHHHHHhhceeeEe---eh-HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhh--ccccchhHH
Confidence 44444 478999977655555443 23 367778888899999999999999888888776554432 233456777
Q ss_pred HHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhh
Q 001584 164 LLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGD 243 (1049)
Q Consensus 164 l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 243 (1049)
+...+.| +++.|-..|+.++..+.+..++.....-...++..+++.+..+ ++ .+-+.+|..++.+.|+-- .
T Consensus 165 L~~ll~D-~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec----~E---W~qi~IL~~l~~y~p~d~-~ 235 (734)
T KOG1061|consen 165 LKDLLSD-SNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNEC----TE---WGQIFILDCLAEYVPKDS-R 235 (734)
T ss_pred HHHHhcC-CCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHh----hh---hhHHHHHHHHHhcCCCCc-h
Confidence 7777788 8999999999999999876643111111122333333332222 22 223344444544444321 2
Q ss_pred hHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHH
Q 001584 244 SVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVI 323 (1049)
Q Consensus 244 ~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l 323 (1049)
-...+++.+..-+.+. ...+...+..++....+..+. +.. .++..+-+-+..++.... +....+..-+
T Consensus 236 ea~~i~~r~~p~Lqh~--n~avvlsavKv~l~~~~~~~~-~~~-~~~~K~~~pl~tlls~~~--------e~qyvaLrNi 303 (734)
T KOG1061|consen 236 EAEDICERLTPRLQHA--NSAVVLSAVKVILQLVKYLKQ-VNE-LLFKKVAPPLVTLLSSES--------EIQYVALRNI 303 (734)
T ss_pred hHHHHHHHhhhhhccC--CcceEeehHHHHHHHHHHHHH-HHH-HHHHHhcccceeeecccc--------hhhHHHHhhH
Confidence 2334444443333222 344444555555555544332 100 111122222222222111 2233333333
Q ss_pred HHHHHHcchhchHHHHHHHHhhhcCCCh-hHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 001584 324 DTMALNLAKHVFPPVFEFASVSCQNASP-KYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFAL 402 (1049)
Q Consensus 324 ~~l~~~~~~~~~~~ll~~l~~~l~~~~~-~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l 402 (1049)
..+....++ .+..-+..+. ++-.++ ..+..-+.++..++.. .++.+++.-+...-.+-+...-..+.+++
T Consensus 304 ~lil~~~p~-~~~~~~~~Ff--~kynDPiYvK~eKleil~~la~~------~nl~qvl~El~eYatevD~~fvrkaIrai 374 (734)
T KOG1061|consen 304 NLILQKRPE-ILKVEIKVFF--CKYNDPIYVKLEKLEILIELAND------ANLAQVLAELKEYATEVDVDFVRKAVRAI 374 (734)
T ss_pred HHHHHhChH-HHHhHhHeee--eecCCchhhHHHHHHHHHHHhhH------hHHHHHHHHHHHhhhhhCHHHHHHHHHHh
Confidence 333333333 2211111110 111222 3444445555555443 45667777777777777777777889999
Q ss_pred HHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcC-CCHhHHHHHH
Q 001584 403 GQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN-SPRNLQETCM 481 (1049)
Q Consensus 403 ~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~-~~~~v~~~~~ 481 (1049)
|+++....+. +..+..++..+.-....|...++..+..+.+.++.. .+.++..+...+.+ .+++.|.+.+
T Consensus 375 g~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~----~~~vv~~l~~~~~sl~epeak~ami 445 (734)
T KOG1061|consen 375 GRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK----YESVVAILCENLDSLQEPEAKAALI 445 (734)
T ss_pred hhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc----hhhhhhhhcccccccCChHHHHHHH
Confidence 9998876432 557888888887555556666777777777777643 24555555555544 5688899999
Q ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhc-cC-CCC
Q 001584 482 SAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISG-FG-LEF 559 (1049)
Q Consensus 482 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~-l~-~~~ 559 (1049)
+.+|.-+...++. ..+|..++.+..++... ..++.+....+.+++ ..+...+.++.++.. .+ .++
T Consensus 446 Wilg~y~~~i~~a--------~elL~~f~en~~dE~~~---Vql~LLta~ik~Fl~--~p~~tq~~l~~vL~~~~~d~~~ 512 (734)
T KOG1061|consen 446 WILGEYAERIENA--------LELLESFLENFKDETAE---VQLELLTAAIKLFLK--KPTETQELLQGVLPLATADTDN 512 (734)
T ss_pred HHHhhhhhccCcH--------HHHHHHHHhhcccchHH---HHHHHHHHHHHHHhc--CCccHHHHHHHHHhhhhccccC
Confidence 9998776654432 22333344333333322 224455554444432 222445566655542 33 446
Q ss_pred chhhHHHHHHHHHHH
Q 001584 560 SELREYTHGFFSNIA 574 (1049)
Q Consensus 560 ~~~r~~~~~~l~~l~ 574 (1049)
+++|..++..|.-+.
T Consensus 513 ~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 513 PDLRDRGLIYWRLLS 527 (734)
T ss_pred hhhhhhHHHHHHHhh
Confidence 799999888777665
No 87
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.58 E-value=0.00071 Score=70.11 Aligned_cols=458 Identities=17% Similarity=0.214 Sum_probs=247.4
Q ss_pred CHHHHHHHHHHHHHHHhccCC---CCCCcchHHHH---------HHhccCCCHHHHHHHHHHHHHhhhhhh---------
Q 001584 92 SAPVRRASANVVSIIAKYAVP---AGEWPDLLPFL---------FQFSQSEQEEHREVALILFSSLTETIG--------- 150 (1049)
Q Consensus 92 ~~~vr~~~~~~l~~i~~~~~~---~~~w~~ll~~l---------~~~l~~~~~~~~~~al~~l~~l~~~~~--------- 150 (1049)
...||..+..++....+.... -+.|.-++|.- .-.++++++..|.-+++++..+.+...
T Consensus 9 ~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~ 88 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDT 88 (728)
T ss_pred HHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 456676666666665442110 16787776632 223567788889899999888875432
Q ss_pred --hccccc-------HHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHH
Q 001584 151 --QTFRPH-------FADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEED 221 (1049)
Q Consensus 151 --~~~~~~-------~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 221 (1049)
..|.++ +.++...+...|..+.++.+-...++|+..++...+-. ..+ -.++-.+++-+.+.+.+.|+.
T Consensus 89 ~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~--~l~-~~~~~~~~~~ik~~i~~~d~~ 165 (728)
T KOG4535|consen 89 SDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYD--RLK-LSLLTKVWNQIKPYIRHKDVN 165 (728)
T ss_pred CCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchH--HHH-HHHHHHHHHHHHHHhhcCCCC
Confidence 123332 22334555555554467778899999999998876521 111 356677777788888889999
Q ss_pred HHHHHHHHHHHHhccCCcch----------------hhhH------H-----------------------HHHHHH----
Q 001584 222 VAVIAFEIFDELIESPAPLL----------------GDSV------K-----------------------SIVHFS---- 252 (1049)
Q Consensus 222 ~~~~~~~~l~~l~~~~~~~~----------------~~~~------~-----------------------~l~~~l---- 252 (1049)
++..++..+..++......= .++. + .++..+
T Consensus 166 v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~ 245 (728)
T KOG4535|consen 166 VRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIV 245 (728)
T ss_pred hhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeee
Confidence 99999888888776532110 0000 0 011100
Q ss_pred -------------HHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHH
Q 001584 253 -------------LEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAA 319 (1049)
Q Consensus 253 -------------~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a 319 (1049)
...++.......+|..+++++..++.+.+-. + .+..++...+..-+.+... +....+
T Consensus 246 ~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~-~--~~~~~l~RvI~~~~~~~~p-------~~~l~~ 315 (728)
T KOG4535|consen 246 VLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMT-Q--AYLMELGRVICKCMGEADP-------SIQLHG 315 (728)
T ss_pred ecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHccCCCCCh-------HHHHHH
Confidence 0111111223457888888888877654321 1 1233344444444444433 556667
Q ss_pred HHHHHHHHHHcchhchHH------HHH-HHHhhh---------cCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHH
Q 001584 320 AEVIDTMALNLAKHVFPP------VFE-FASVSC---------QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIV 383 (1049)
Q Consensus 320 ~~~l~~l~~~~~~~~~~~------ll~-~l~~~l---------~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l 383 (1049)
+.+++.+....+....|. ... +-.-.+ .+.....+.++|.++..|.......+...-....+.+
T Consensus 316 a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~F 395 (728)
T KOG4535|consen 316 AKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITF 395 (728)
T ss_pred HHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHH
Confidence 778877776555222211 111 111111 1122334556777777765543222222222344555
Q ss_pred HhhcCC-CChhHHHHHHHHHHHhHhhhcHHH-HhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHH
Q 001584 384 LGALRD-PEQFVRGAASFALGQFAEYLQPEI-VSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPL 461 (1049)
Q Consensus 384 ~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~l 461 (1049)
..+-+| .+..||.+|.++++.+.-+..-.. ..+...-...++..+.|..-.+|+.+.++++++.+.+-..+
T Consensus 396 l~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~------- 468 (728)
T KOG4535|consen 396 LLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNM------- 468 (728)
T ss_pred HhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCC-------
Confidence 555554 566788899988887765533211 22334556666777778777788999999998877653322
Q ss_pred HHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccc
Q 001584 462 MGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARME 541 (1049)
Q Consensus 462 l~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 541 (1049)
+.++..+-.++|.+... .+..... .+.+..+++..+++.++.+.+.+.+ ...
T Consensus 469 ------------Ps~~s~~eR~sg~ll~~--------------~~~~A~~-~~Ad~dkV~~navraLgnllQvlq~-i~~ 520 (728)
T KOG4535|consen 469 ------------PTPDSFQERFSGLLLLK--------------MLRSAIE-ASADKDKVKSNAVRALGNLLQFLQP-IEK 520 (728)
T ss_pred ------------CCchHHHHHHHHHHHHH--------------HHHHHHH-hhhhhhhhhhHHHHHHhhHHHHHHH-hhh
Confidence 22233333333322211 0111111 1112224566677777777666542 333
Q ss_pred cchHHHHHHHHhccC-----CCCchhhHHHHHHHHHHHHHccc--CccCchhhhhHHHHhhcc
Q 001584 542 PILPPFVEAAISGFG-----LEFSELREYTHGFFSNIAGVLED--GFAQYLPLVVPLAFSSCN 597 (1049)
Q Consensus 542 ~~~~~i~~~l~~~l~-----~~~~~~r~~~~~~l~~l~~~~~~--~~~~~l~~i~~~ll~~~~ 597 (1049)
+-+..+++.-...+. .....+|=.++.++|++.+.-.- .-.++.+.+.+.|.....
T Consensus 521 ~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~ 583 (728)
T KOG4535|consen 521 PTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVT 583 (728)
T ss_pred ccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHH
Confidence 334444443332221 12445677778888888865432 335677888888877654
No 88
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=0.0029 Score=69.60 Aligned_cols=485 Identities=13% Similarity=0.096 Sum_probs=227.0
Q ss_pred CCChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhccCC--------CCCCc
Q 001584 47 AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLE-HSAPVRRASANVVSIIAKYAVP--------AGEWP 117 (1049)
Q Consensus 47 ~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e-~~~~vr~~~~~~l~~i~~~~~~--------~~~w~ 117 (1049)
+.++.+|..|-..|++. +-+..+...+++.+.++ .+..||..++--+..-..+.+. -+..+
T Consensus 14 dada~~rt~AE~~Lk~l----------eKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~ 83 (970)
T COG5656 14 DADAGKRTIAEAMLKDL----------EKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKS 83 (970)
T ss_pred ccCcchhhHHHHHHHHh----------hcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcccH
Confidence 56899999999999886 33445666777777754 6788888887777653321111 01222
Q ss_pred c----hHHHHHHhccCCCHHHHHHHHHHHHHh-h-hhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhccc
Q 001584 118 D----LLPFLFQFSQSEQEEHREVALILFSSL-T-ETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFT 191 (1049)
Q Consensus 118 ~----ll~~l~~~l~~~~~~~~~~al~~l~~l-~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~ 191 (1049)
+ +++.++..+..+....| .++.+...+ . +..+ ...++ +.|...+.+.+ .+...-..++.|+..++...
T Consensus 84 e~K~~lienil~v~l~sp~~tr-~~l~ail~~I~seD~p---s~~wg-l~p~~~nll~s-~ea~~vy~gLlcl~elfkay 157 (970)
T COG5656 84 EAKKYLIENILDVFLYSPEVTR-TALNAILVNIFSEDKP---SDLWG-LFPKAANLLRS-SEANHVYTGLLCLEELFKAY 157 (970)
T ss_pred HHHHHHHHHHHHHHhcCCchHH-HHHHHHHHHhccccCc---hhhcc-cchHHHHhhcc-cchhHHHHHHHHHHHHHHHH
Confidence 2 44555555544433333 233333322 2 2222 24455 77777888887 78888888899988876543
Q ss_pred C---Ch--hhH-HHHHhhhHHHHHHHHHHhhcCCHH---HHHHHHHHHHHHhcc-CCcchhh--hHHHHHHHHHHhhhCC
Q 001584 192 N---DG--AEV-VKFREFIPSILNVSRQCLASGEED---VAVIAFEIFDELIES-PAPLLGD--SVKSIVHFSLEVSSSH 259 (1049)
Q Consensus 192 ~---~~--~~~-~~~~~~~~~ll~~l~~~l~~~~~~---~~~~~~~~l~~l~~~-~~~~~~~--~~~~l~~~l~~~~~~~ 259 (1049)
+ +. ... .-...++|.+.++-......+|.. .....++.+....-+ .|.++.. .+..-+++.+.+++.+
T Consensus 158 Rwk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i~qkp 237 (970)
T COG5656 158 RWKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRILQKP 237 (970)
T ss_pred hhhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHHHcCC
Confidence 2 11 111 112345565555544443323332 233344444333222 3443322 2333444455555433
Q ss_pred ------CCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchh
Q 001584 260 ------NLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH 333 (1049)
Q Consensus 260 ------~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~ 333 (1049)
+.++++|... .|..+ +++ ...-+...++.-.+.. ...........-...-..
T Consensus 238 lp~evlsldpevRs~~--~wvKc--------kKW--a~ynLyR~fqRy~k~s----------~~~~y~~f~~~f~t~vp~ 295 (970)
T COG5656 238 LPNEVLSLDPEVRSLS--KWVKC--------KKW--AAYNLYRSFQRYIKKS----------YKKSYLSFYITFMTRVPM 295 (970)
T ss_pred CCHHHhccChhhcccc--chhhh--------hHH--HHHHHHHHHHHhcchh----------HHHHHHHHHHHHHHHHHH
Confidence 2244444331 11111 111 1011111222111110 000000111100000012
Q ss_pred chHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcC------hHHHHHhHHHHHH-HHHhhcCCCChhHHHHHHHHHHHhH
Q 001584 334 VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC------AEWMKEKLESVLH-IVLGALRDPEQFVRGAASFALGQFA 406 (1049)
Q Consensus 334 ~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~------~~~~~~~l~~i~~-~l~~~l~d~~~~vr~~a~~~l~~l~ 406 (1049)
++..+++.+..+-+.+-|-. ...+..++...+.| ...+.+|+.-++. .++++++-.....
T Consensus 296 il~tffkqie~wgqgqLWls-d~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~e------------ 362 (970)
T COG5656 296 ILATFFKQIEEWGQGQLWLS-DIELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEE------------ 362 (970)
T ss_pred HHHHHHHHHHHhhcCCeecc-hHHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhH------------
Confidence 23334444444444444533 34556666666654 3456777777664 5556554221110
Q ss_pred hhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcC--------CCHhHHH
Q 001584 407 EYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN--------SPRNLQE 478 (1049)
Q Consensus 407 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~--------~~~~v~~ 478 (1049)
+.+..+-.+|+..-+...-.+. .+.+ +|..++......-++. -+..+++.+...+.. .+..-.+
T Consensus 363 ElfEnDp~eyirry~df~d~g~---spdl--aal~fl~~~~sKrke~---TfqgiLsf~~sil~qsaa~psn~dnarq~e 434 (970)
T COG5656 363 ELFENDPDEYIRRYYDFFDNGL---SPDL--AALFFLIISKSKRKEE---TFQGILSFLLSILGQSAATPSNIDNARQAE 434 (970)
T ss_pred HHHhcCHHHHHHHhcchhcCCC---ChhH--HHHHHHHHHhcccchh---hhhhHHHHHHHHHhcccCCCCccccHHHHh
Confidence 0111111222222221111111 1222 2222222222111221 144455555555422 1233456
Q ss_pred HHHHHHHHHHHHhhhhccccHH---H-HHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhc
Q 001584 479 TCMSAIGSVAAAAEQAFIPYAE---R-VLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISG 554 (1049)
Q Consensus 479 ~~~~~l~~l~~~~~~~~~~~~~---~-~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~ 554 (1049)
.++..++++.... ....|... . +++.+...++ ++.--+|.++.+.++.+..-.. -...+.++.+...++
T Consensus 435 galr~lasi~s~i-tk~sp~an~me~fiv~hv~P~f~---s~ygfL~Srace~is~~eeDfk---d~~ill~aye~t~nc 507 (970)
T COG5656 435 GALRLLASIKSFI-TKMSPAANVMEYFIVNHVIPAFR---SNYGFLKSRACEFISTIEEDFK---DNGILLEAYENTHNC 507 (970)
T ss_pred hHHHHHHHHHHHh-ccCchHHHHHHHHHHHHhhHhhc---CcccchHHHHHHHHHHHHHhcc---cchHHHHHHHHHHHH
Confidence 6777777766622 12222211 1 1222222221 2233467888898888743332 123445677777888
Q ss_pred cCCCCchhhHHHHHHHHHHHHHc--ccCccCchhhhhHHHHhhcc
Q 001584 555 FGLEFSELREYTHGFFSNIAGVL--EDGFAQYLPLVVPLAFSSCN 597 (1049)
Q Consensus 555 l~~~~~~~r~~~~~~l~~l~~~~--~~~~~~~l~~i~~~ll~~~~ 597 (1049)
+++.+-.++-.+..++..+.... .+.+..++|..|..|++..+
T Consensus 508 l~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn 552 (970)
T COG5656 508 LKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSN 552 (970)
T ss_pred HhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcc
Confidence 88888888887777777776543 35677888888888887654
No 89
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.50 E-value=0.00043 Score=73.25 Aligned_cols=289 Identities=15% Similarity=0.162 Sum_probs=173.0
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 001584 157 FADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIES 236 (1049)
Q Consensus 157 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 236 (1049)
+.++.|++..-+.+ .-..|...+.++++++....-. ..++.+.+..++.++.+.....+..|+++|.+++..
T Consensus 262 ~~q~rpfL~~wls~-k~emV~lE~Ar~v~~~~~~nv~-------~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~ 333 (898)
T COG5240 262 LLQLRPFLNSWLSD-KFEMVFLEAARAVCALSEENVG-------SQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMK 333 (898)
T ss_pred HHHHHHHHHHHhcC-cchhhhHHHHHHHHHHHHhccC-------HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhh
Confidence 34566777777776 6677888888888887653311 345677888888888888888899999999999998
Q ss_pred CCcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHH
Q 001584 237 PAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPD 316 (1049)
Q Consensus 237 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~ 316 (1049)
.|..+.-.-+++=..+ .+.-|..+.-++.++.+.... +-+..++..+...+.+-.+ ...
T Consensus 334 ~P~kv~vcN~evEsLI---------sd~Nr~IstyAITtLLKTGt~-----e~idrLv~~I~sfvhD~SD-------~FK 392 (898)
T COG5240 334 YPQKVSVCNKEVESLI---------SDENRTISTYAITTLLKTGTE-----ETIDRLVNLIPSFVHDMSD-------GFK 392 (898)
T ss_pred CCceeeecChhHHHHh---------hcccccchHHHHHHHHHcCch-----hhHHHHHHHHHHHHHhhcc-------Cce
Confidence 8875533322221111 122344444455555543222 1233344445555544433 344
Q ss_pred HHHHHHHHHHHHHcchhchHHHHHHHHhh-hcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHH
Q 001584 317 RAAAEVIDTMALNLAKHVFPPVFEFASVS-CQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVR 395 (1049)
Q Consensus 317 ~~a~~~l~~l~~~~~~~~~~~ll~~l~~~-l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr 395 (1049)
..+..++..++..++.. +...+.++... ++....+-+.+++.++..+.+..|+.-...+ ..+...+.|-. --
T Consensus 393 iI~ida~rsLsl~Fp~k-~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraL----e~LC~fIEDce--y~ 465 (898)
T COG5240 393 IIAIDALRSLSLLFPSK-KLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERAL----EVLCTFIEDCE--YH 465 (898)
T ss_pred EEeHHHHHHHHhhCcHH-HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHH----HHHHHHHhhcc--hh
Confidence 55667788888877732 22344444333 3445677788888888888887665433333 33444444421 11
Q ss_pred HHHHHHHHHhHhhhcHH--HHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCC
Q 001584 396 GAASFALGQFAEYLQPE--IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSP 473 (1049)
Q Consensus 396 ~~a~~~l~~l~~~~~~~--~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~ 473 (1049)
..+.+.|+-+.+..+.. -..|. ..+.+.+-=.+..||.+|+.||..|.-+..+... ...+...+..++++.+
T Consensus 466 ~I~vrIL~iLG~EgP~a~~P~~yv----rhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~--~~sv~~~lkRclnD~D 539 (898)
T COG5240 466 QITVRILGILGREGPRAKTPGKYV----RHIYNRLILENNIVRSAAVQALSKFALNISDVVS--PQSVENALKRCLNDQD 539 (898)
T ss_pred HHHHHHHHHhcccCCCCCCcchHH----HHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc--HHHHHHHHHHHhhccc
Confidence 23445555555554321 11222 2233333334568999999999998766654332 2455666778889999
Q ss_pred HhHHHHHHHHHHHH
Q 001584 474 RNLQETCMSAIGSV 487 (1049)
Q Consensus 474 ~~v~~~~~~~l~~l 487 (1049)
..+|..|.-.+..+
T Consensus 540 deVRdrAsf~l~~~ 553 (898)
T COG5240 540 DEVRDRASFLLRNM 553 (898)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999987766554
No 90
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.43 E-value=0.00018 Score=78.29 Aligned_cols=250 Identities=16% Similarity=0.203 Sum_probs=159.8
Q ss_pred cccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhc--cChhhhhhHHHHHHHHH
Q 001584 452 EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVL--TNDEDLRSRARATELLG 529 (1049)
Q Consensus 452 ~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~r~~a~~~l~ 529 (1049)
+++.|+.+.++..|+..+..+...-.+..+.|+-++....++...|+...+++.|..++.. .+...-..-...+|+++
T Consensus 18 ~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~ 97 (435)
T PF03378_consen 18 ADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIG 97 (435)
T ss_dssp GGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHH
Confidence 5688999999999999998755555678899999999999999999998888877776642 22222234456789999
Q ss_pred HHHHhhch---hccccchHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcc-cCccCchhhhhHHHHhhccCCCCCccC
Q 001584 530 LVAESVGR---ARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLE-DGFAQYLPLVVPLAFSSCNLDDGSAVD 605 (1049)
Q Consensus 530 ~l~~~~~~---~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~-~~~~~~l~~i~~~ll~~~~~~~~~~~~ 605 (1049)
.+.+.+.. +....+-+.+++.+...++.+-.+.-.++++.++.+.+..+ ..+.+....++|.|+.-.-
T Consensus 98 ~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~l-------- 169 (435)
T PF03378_consen 98 ALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPAL-------- 169 (435)
T ss_dssp HHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGG--------
T ss_pred HHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcch--------
Confidence 99886543 22223344455555566666767888999999999999887 6777777778888874211
Q ss_pred CCCCchhhhccCCCCCCCcchhhcccccceeeeccchhhHHHHHHHHHHHHHHhhhhch--hhHHHHHHHHHhhhcCCCh
Q 001584 606 IDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYA--PFLEESLKILVRHASYFHE 683 (1049)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 683 (1049)
|. +.+ .-.+..+.|..+....+..+. ++++.++..+-+++.+...
T Consensus 170 ------We------------------------~~g---niPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~ 216 (435)
T PF03378_consen 170 ------WE------------------------RRG---NIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAN 216 (435)
T ss_dssp ------GG------------------------STT---THHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTC
T ss_pred ------hc------------------------cCC---CcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCc
Confidence 11 011 234566778888777766654 6788888888777654322
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHhC
Q 001584 684 DVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYG 753 (1049)
Q Consensus 684 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~i~~~g 753 (1049)
+ ..+...|..++..+ ..+.+.++++.++..++..+........+...+..+.-++...|
T Consensus 217 D--~~gF~LL~~iv~~~---------p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g 275 (435)
T PF03378_consen 217 D--HYGFDLLESIVENL---------PPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYG 275 (435)
T ss_dssp H--HHHHHHHHHHHHHS----------HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-
T ss_pred c--hHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcC
Confidence 2 34777777776654 23457778888888888888766555555445544444444444
No 91
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=0.0059 Score=67.34 Aligned_cols=533 Identities=13% Similarity=0.166 Sum_probs=245.3
Q ss_pred HHHHHHHHHhhcC---C-CChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhc
Q 001584 376 LESVLHIVLGALR---D-PEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG 451 (1049)
Q Consensus 376 l~~i~~~l~~~l~---d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 451 (1049)
+++++..-.+.+. . .+|.+-..++.|+|++.+|+.-..-- -+..++.+.+.++ ...+|.+||.|+-.++..--
T Consensus 187 ip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIa-Nd~f~nLLy~fl~--ieelR~aac~cilaiVsKkM 263 (980)
T KOG2021|consen 187 IPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIA-NDYFLNLLYKFLN--IEELRIAACNCILAIVSKKM 263 (980)
T ss_pred HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhh-chhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCC
Confidence 5555555444442 2 37889999999999999997532211 1346666777666 46899999999988876431
Q ss_pred c--ccccchHHHHHHHHHh-hcCCCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHH
Q 001584 452 E--EILPFLDPLMGKLLAA-LENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELL 528 (1049)
Q Consensus 452 ~--~l~~~~~~ll~~l~~~-l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l 528 (1049)
+ +-.+.++.+-+.+--. ..+.+...-....+-++.+....|-.+.-.. .+.. ...+. . .+.+++
T Consensus 264 kP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~-------s~ln-seld~--~---~kqn~l 330 (980)
T KOG2021|consen 264 KPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIII-------SQLN-SELDT--L---YKQNVL 330 (980)
T ss_pred ChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhH-------hhhh-hccCH--H---HHHHHH
Confidence 1 1112333321111110 1111211222223333333333332221111 1110 11111 1 112333
Q ss_pred HHHHHhhchhccccchHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcc------cCccCchhhhhHHHHhhccCCCCC
Q 001584 529 GLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLE------DGFAQYLPLVVPLAFSSCNLDDGS 602 (1049)
Q Consensus 529 ~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~------~~~~~~l~~i~~~ll~~~~~~~~~ 602 (1049)
..+- +++..+++.+.++..+.....+..+......++ +.-..++..++..++..+.+++..
T Consensus 331 ~~ll-------------~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy 397 (980)
T KOG2021|consen 331 SILL-------------EIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMY 397 (980)
T ss_pred HHHH-------------HHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHh
Confidence 3322 244455555666666666666776666655544 223345677777777777766432
Q ss_pred ccCCCCCchhhhccCCCCCCCcchhhcccccceeeeccchhhHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHhhhcCCC
Q 001584 603 AVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFH 682 (1049)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 682 (1049)
..+.+ +..++++..- . +.|..--..+..++...++.+...+.+.+...+......+
T Consensus 398 ~nddn------------~tg~EeEa~f---~---------e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~s 453 (980)
T KOG2021|consen 398 FNDDN------------VTGDEEEAFF---E---------EVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEES 453 (980)
T ss_pred hcccC------------CCCchHHHHH---H---------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcch
Confidence 11111 0000000000 0 1121111122222222232222222222222221111222
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHH-hhhCChHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 001584 683 EDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRT-MTEDDDKDVVAQACTSIVEIINDYGYMAVEPYM 761 (1049)
Q Consensus 683 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~~~~~~l~~~i~~~g~~~~~~~~ 761 (1049)
-..-+.|...+..+.++...-....+.+.-.....+..+++.+.+. ....+++-+....++.+...-+-+. .-..+.
T Consensus 454 wqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~--~esq~i 531 (980)
T KOG2021|consen 454 WQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFS--TESQKI 531 (980)
T ss_pred HHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHh--cchhhh
Confidence 2233455555555555443211111222212223444444444332 2223344444444444433222111 112344
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhccCCC---
Q 001584 762 SRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRP--- 838 (1049)
Q Consensus 762 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~--- 838 (1049)
+.+++.++ +...-. ...+.+..-+..++..+.+.++....||++.++..+-..|....+
T Consensus 532 p~vL~aFl----d~rglh--------------n~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N 593 (980)
T KOG2021|consen 532 PLVLNAFL----DSRGLH--------------NKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTIN 593 (980)
T ss_pred HHHHHHHc----cchhcc--------------ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcC
Confidence 44433333 211100 112223335666778888888888889999888887777722111
Q ss_pred --------cccchhhhHhHHHHHhhcCCc---hhhcHhhhHHH---------HHHhcC-CCChH----hHHHHHHHHHHH
Q 001584 839 --------LQDRTMVVATLAEVARDMGSP---IAAYVDRVMPL---------VLKELA-SPDAM----NRRNAAFCVGEL 893 (1049)
Q Consensus 839 --------~~~r~~a~~~l~~l~~~~~~~---~~~~~~~i~~~---------l~~~l~-~~~~~----vr~~a~~~lg~l 893 (1049)
.+.....+.++|-++...... -..|...++.+ ....+. |.+.. -..+++-++|.+
T Consensus 594 ~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~l 673 (980)
T KOG2021|consen 594 AQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTL 673 (980)
T ss_pred ccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 112234455555554332111 11233333321 111222 33322 234566678888
Q ss_pred HhhcCcch--------hhHHHHHHHhhhhhhCCCCCChhHHhhHHHHHHHHHHhCC-CCCC-hhhHHHHHHhhCCCCCcH
Q 001584 894 CKNGGESA--------LKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNP-QSIP-LNQVLPVLLKVLPLKEDF 963 (1049)
Q Consensus 894 ~~~~~~~~--------~~~~~~~l~~L~~~l~~~~~~~~~~~~a~~~l~~i~~~~~-~~~~-~~~~l~~~l~~lp~~~d~ 963 (1049)
++...... ...+.++++.+...+......+.+|...-..++||+..-. +.+| +++.+..+++.- |.
T Consensus 674 akgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~----d~ 749 (980)
T KOG2021|consen 674 AKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSST----DL 749 (980)
T ss_pred hhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcC----CH
Confidence 76543321 2235556666666665445567888888888999987644 4456 667766666643 44
Q ss_pred HhhHHHHHHHHHHHhhCChhhc
Q 001584 964 EESMAVYNCISTLVLSSNPQIL 985 (1049)
Q Consensus 964 ~e~~~~~~~l~~l~~~~~~~~~ 985 (1049)
.|......++-+++...+..+.
T Consensus 750 kEmvdfl~flsQLihkfk~~~~ 771 (980)
T KOG2021|consen 750 KEMVDFLGFLSQLIHKFKTDCY 771 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666677665554443
No 92
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.41 E-value=2.1e-06 Score=76.97 Aligned_cols=110 Identities=16% Similarity=0.194 Sum_probs=89.5
Q ss_pred HHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhh
Q 001584 338 VFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLE-SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH 416 (1049)
Q Consensus 338 ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 416 (1049)
+++.+.+.+.+.+|..|..++.+++.++.+.++.....+. .+++.+...++|+++.+|..++++|++++...++.....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 4555556677888999999999999999876554444444 789999999999999999999999999998764333333
Q ss_pred h-hhHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 001584 417 Y-ESVLPCILNALEDESDEVKEKSYYALAAFC 447 (1049)
Q Consensus 417 ~-~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~ 447 (1049)
. ..+++.+++.+.+.+.+++..++++|.+++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 3 358999999999999999999999999876
No 93
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.40 E-value=6.1e-07 Score=66.26 Aligned_cols=55 Identities=38% Similarity=0.662 Sum_probs=52.5
Q ss_pred hhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 001584 351 PKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQF 405 (1049)
Q Consensus 351 ~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l 405 (1049)
|.+|.+|+++||.+++.+++.+.++++++++.+...++|+++.||.+|+++||++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 7899999999999999999999999999999999999999999999999999864
No 94
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.39 E-value=0.012 Score=68.83 Aligned_cols=167 Identities=16% Similarity=0.138 Sum_probs=114.4
Q ss_pred HHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhccCCCcccchhhhHhHHHHHhhcCCchhhcHhhhHHHHHHhcC
Q 001584 797 EVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELA 876 (1049)
Q Consensus 797 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~ 876 (1049)
+.+..++.-+++.++-. -+.|.+.-+|.++..+.....+.+|..++-.+||+.-.++.-+.| .-+.+...+.
T Consensus 937 p~Lq~AAtLaL~klM~i----Sa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~----~T~~Ly~rL~ 1008 (1251)
T KOG0414|consen 937 PELQAAATLALGKLMCI----SAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEP----WTEHLYRRLR 1008 (1251)
T ss_pred HHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccch----hhHHHHHHhc
Confidence 44555555555555433 246788888889998887777789999999999998776655544 4566777889
Q ss_pred CCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCCCCCChhHHhhHHHHHHHHHHhCCCCCChhhHHHHHHhh
Q 001584 877 SPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKV 956 (1049)
Q Consensus 877 ~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~l~~~l~~ 956 (1049)
|.+++||.+|.-.+..++.+.-=.++.|+....-+| . ++++.+++-|=.-+-.+... .+ ++-+++|.++++
T Consensus 1009 D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl----~--D~~~~IsdlAk~FF~Els~k-~n--~iynlLPdil~~ 1079 (1251)
T KOG0414|consen 1009 DESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCL----E--DPNAEISDLAKSFFKELSSK-GN--TIYNLLPDILSR 1079 (1251)
T ss_pred CccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHh----c--CCcHHHHHHHHHHHHHhhhc-cc--chhhhchHHHHh
Confidence 999999999999999988776444455665555444 2 34555555443333333322 22 256778888888
Q ss_pred CCCC-CcHHhhHHHHHHHHHHHhhC
Q 001584 957 LPLK-EDFEESMAVYNCISTLVLSS 980 (1049)
Q Consensus 957 lp~~-~d~~e~~~~~~~l~~l~~~~ 980 (1049)
|.-. -+++....++++|..+++..
T Consensus 1080 Ls~~~l~~~~~~~vm~~li~~ikkd 1104 (1251)
T KOG0414|consen 1080 LSNGNLEEESYKTVMEFLIGLIKKD 1104 (1251)
T ss_pred hccCcccchhhHHHHHHHHHHhccc
Confidence 8543 34456678899999998765
No 95
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.00085 Score=73.66 Aligned_cols=311 Identities=13% Similarity=0.120 Sum_probs=170.0
Q ss_pred ccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHH
Q 001584 127 SQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPS 206 (1049)
Q Consensus 127 l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 206 (1049)
+++++.-+|...++.+..+-+ .+.+..++|.+..+|.+ +...||..|.-|+..+.... ..++|.
T Consensus 108 LQHPNEyiRG~TLRFLckLkE------~ELlepl~p~IracleH-rhsYVRrNAilaifsIyk~~---------~~L~pD 171 (948)
T KOG1058|consen 108 LQHPNEYIRGSTLRFLCKLKE------PELLEPLMPSIRACLEH-RHSYVRRNAILAIFSIYKNF---------EHLIPD 171 (948)
T ss_pred ccCchHhhcchhhhhhhhcCc------HHHhhhhHHHHHHHHhC-cchhhhhhhheeehhHHhhh---------hhhcCC
Confidence 566777778888877776643 24467788899999998 99999999999888877653 333443
Q ss_pred HHHHHHHHh-hcCCHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHh-hhCCCCChHHHHHHHHHHHHHHhhhHhhh
Q 001584 207 ILNVSRQCL-ASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEV-SSSHNLEPNTRHQAIQIISWLAKYKYNSL 284 (1049)
Q Consensus 207 ll~~l~~~l-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~r~~a~~~l~~l~~~~~~~~ 284 (1049)
.-+.+..++ .+.++...+.|+-.|... .+..- +.++... .+-++..+..+...++++...+...|..-
T Consensus 172 apeLi~~fL~~e~DpsCkRNAFi~L~~~---D~ErA-------l~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~ 241 (948)
T KOG1058|consen 172 APELIESFLLTEQDPSCKRNAFLMLFTT---DPERA-------LNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK 241 (948)
T ss_pred hHHHHHHHHHhccCchhHHHHHHHHHhc---CHHHH-------HHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh
Confidence 334443344 345666666665444321 11111 1111111 11133456666666777777665444321
Q ss_pred hhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhh-hcCCChhHHhHHHHHHHH
Q 001584 285 KKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVS-CQNASPKYREAAVTAIGI 363 (1049)
Q Consensus 285 ~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~-l~~~~~~~r~~al~~l~~ 363 (1049)
. ..+..++.+|...+. .++..|+..+-.++.. ...+...-..+.++ .+.++-..+...+.-|..
T Consensus 242 ~------~~i~~i~~lL~stss-------aV~fEaa~tlv~lS~~--p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~ 306 (948)
T KOG1058|consen 242 A------RYIRCIYNLLSSTSS-------AVIFEAAGTLVTLSND--PTALKAAASTYIDLLVKESDNNVKLIVLDRLSE 306 (948)
T ss_pred h------HHHHHHHHHHhcCCc-------hhhhhhcceEEEccCC--HHHHHHHHHHHHHHHHhccCcchhhhhHHHHHH
Confidence 1 234444555544322 2222222222111110 00010001111111 111222333333444444
Q ss_pred HhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcc-------CCChHHH
Q 001584 364 ISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALE-------DESDEVK 436 (1049)
Q Consensus 364 i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~-------~~~~~v~ 436 (1049)
+.... ...+..++--++..++.|+..||..++...-.+.+.. .+.+++..+-+.+. +.+...|
T Consensus 307 l~~~~----~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr------Nvediv~~Lkke~~kT~~~e~d~~~~yR 376 (948)
T KOG1058|consen 307 LKALH----EKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR------NVEDIVQFLKKEVMKTHNEESDDNGKYR 376 (948)
T ss_pred Hhhhh----HHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc------cHHHHHHHHHHHHHhccccccccchHHH
Confidence 44221 2335566666778889999999999988766665542 23334444443332 2234456
Q ss_pred HHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhh
Q 001584 437 EKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (1049)
Q Consensus 437 ~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~ 492 (1049)
..-..++....-.+ ..+...+++.++..+.+.++.....++.++..+.+..+
T Consensus 377 qlLiktih~cav~F----p~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 377 QLLIKTIHACAVKF----PEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred HHHHHHHHHHhhcC----hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc
Confidence 66666666655444 45788899999999999998888888888877766554
No 96
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=0.016 Score=67.80 Aligned_cols=136 Identities=15% Similarity=0.160 Sum_probs=99.8
Q ss_pred cHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcC-h----HHHHHhH-HHHHHHHHhhc
Q 001584 314 APDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC-A----EWMKEKL-ESVLHIVLGAL 387 (1049)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~-~----~~~~~~l-~~i~~~l~~~l 387 (1049)
......+..|..++...|.-..+.+-. +.+++.+.+...|.+.+.+++.+.... . +.....+ +.++..+...+
T Consensus 290 ~g~k~v~~fL~elS~~~P~l~~~~l~~-lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl 368 (1251)
T KOG0414|consen 290 AGPKIVGNFLVELSERVPKLMLRQLTL-LVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERL 368 (1251)
T ss_pred cchhhHHHHHHHHHHHhHHHHHHHHHH-HHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHh
Confidence 445556677777887776544433333 334677888999999999998876532 1 2222233 34889999999
Q ss_pred CCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhc
Q 001584 388 RDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG 451 (1049)
Q Consensus 388 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 451 (1049)
.|-++.||..+.....+++..... .......++...+..+.|.+.-||..|+..+..+....|
T Consensus 369 ~Dvsa~vRskVLqv~~~l~~~~s~-p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 369 LDVSAYVRSKVLQVFRRLFQQHSI-PLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred hcccHHHHHHHHHHHHHHHHccCC-CccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999988876432 123456788889999999999999999999999887654
No 97
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.32 E-value=0.013 Score=66.44 Aligned_cols=129 Identities=19% Similarity=0.279 Sum_probs=101.2
Q ss_pred HHHHHHHhHHHHHHHHhCC-ChHHHHHHHHHHHHHhhccCCCcccchhhhHhHHHHHhhcCCchhhcHhhhHHHHHHhcC
Q 001584 798 VIMDAVSDLLPAFAKSMGP-HFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELA 876 (1049)
Q Consensus 798 ~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~ 876 (1049)
....+...+++ ..+. ...|.++.++|.+++.+.-.+. .+|..++.++..++.-.+.-...|+..++|.++..=.
T Consensus 886 ~yl~~LshVl~----~vP~~vllp~~~~LlPLLLq~Ls~~D~-~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~ 960 (1030)
T KOG1967|consen 886 NYLEALSHVLT----NVPKQVLLPQFPMLLPLLLQALSMPDV-IVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSS 960 (1030)
T ss_pred HHHHHHHHHHh----cCCHHhhccchhhHHHHHHHhcCCCcc-chhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCC
Confidence 34435544444 4443 5668899999999999986654 6799999999999988887788899999999998766
Q ss_pred CCC---hHhHHHHHHHHHHHHhhcC-cchhhHHHHHHHhhhhhhCCCCCChhHHhhHHHHH
Q 001584 877 SPD---AMNRRNAAFCVGELCKNGG-ESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAV 933 (1049)
Q Consensus 877 ~~~---~~vr~~a~~~lg~l~~~~~-~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~a~~~l 933 (1049)
+.+ ..||..|..|++.+.+..| ....+|-+.++.+|.+.+.++ .+-+|.-|+.+=
T Consensus 961 ~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk--KRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 961 DNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK--KRLVRKEAVDTR 1019 (1030)
T ss_pred CCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH--HHHHHHHHHHHh
Confidence 655 5699999999999999665 456788999999999999653 367777777663
No 98
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.30 E-value=0.0036 Score=71.93 Aligned_cols=375 Identities=16% Similarity=0.168 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHH
Q 001584 133 EHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSR 212 (1049)
Q Consensus 133 ~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 212 (1049)
.+...++.+|..+++.......-.-..+++.+..+|.. .+.++...+..+|.++.-+.+...... -.+.+|.+..
T Consensus 264 qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr-~n~ellil~v~fLkkLSi~~ENK~~m~-~~giV~kL~k--- 338 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDR-ENEELLILAVTFLKKLSIFKENKDEMA-ESGIVEKLLK--- 338 (708)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHHHHHHHH-HcCCHHHHHH---
Confidence 34446777788887766544333345678888899987 788899999999988877664332222 2345555554
Q ss_pred HHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHH
Q 001584 213 QCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIP 292 (1049)
Q Consensus 213 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~ 292 (1049)
++.+++.+....++++|.++.....-.-.-.-..+++.+...+.+ +..+..++.++..++....
T Consensus 339 -Ll~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d----~~~~~val~iLy~LS~dd~----------- 402 (708)
T PF05804_consen 339 -LLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKD----PNFREVALKILYNLSMDDE----------- 402 (708)
T ss_pred -HhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCC----CchHHHHHHHHHHhccCHh-----------
Confidence 456667777777777777665322110000000122222222221 2233333333333321100
Q ss_pred HHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc-hhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcCh--
Q 001584 293 ILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA-- 369 (1049)
Q Consensus 293 il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~-~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~-- 369 (1049)
.+. .+. .+.+|.++..+. ..++.+....++..+-.++....
T Consensus 403 ----------------------~r~-----------~f~~TdcIp~L~~~Ll---~~~~~~v~~eliaL~iNLa~~~rna 446 (708)
T PF05804_consen 403 ----------------------ARS-----------MFAYTDCIPQLMQMLL---ENSEEEVQLELIALLINLALNKRNA 446 (708)
T ss_pred ----------------------hHH-----------HHhhcchHHHHHHHHH---hCCCccccHHHHHHHHHHhcCHHHH
Confidence 000 000 122333333322 22233333233333333332211
Q ss_pred HHHHH--hHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCC-ChHHHHHHHHHHHHH
Q 001584 370 EWMKE--KLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE-SDEVKEKSYYALAAF 446 (1049)
Q Consensus 370 ~~~~~--~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~v~~~a~~~l~~l 446 (1049)
..+.. -++.++...+ +..++ ..++.+..++.+-++ .+..+.+.+..++..+... +......++.+|+++
T Consensus 447 qlm~~g~gL~~L~~ra~---~~~D~----lLlKlIRNiS~h~~~-~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL 518 (708)
T PF05804_consen 447 QLMCEGNGLQSLMKRAL---KTRDP----LLLKLIRNISQHDGP-LKELFVDFIGDLAKIVSSGDSEEFVVECLGILANL 518 (708)
T ss_pred HHHHhcCcHHHHHHHHH---hcccH----HHHHHHHHHHhcCch-HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhc
Confidence 11111 1333333322 22232 234566666666432 3444445555566656544 344555555555555
Q ss_pred HHhhccccccchH--HHHHHHHHhhcCC--CHhHHHHHHHHHHHHHHHhhhhccccH--HHHHHHHHHHHhccC-hhhhh
Q 001584 447 CEDMGEEILPFLD--PLMGKLLAALENS--PRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMVLTN-DEDLR 519 (1049)
Q Consensus 447 ~~~~~~~l~~~~~--~ll~~l~~~l~~~--~~~v~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~-~~~~~ 519 (1049)
.-. +.....++. .+++.+.+.+..+ .+.+...++-.+|+++.- ....+.+ ..+++.+..++.... |++..
T Consensus 519 ~~~-~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d--~~~A~lL~~sgli~~Li~LL~~kqeDdE~V 595 (708)
T PF05804_consen 519 TIP-DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD--PECAPLLAKSGLIPTLIELLNAKQEDDEIV 595 (708)
T ss_pred ccC-CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC--HHHHHHHHhCChHHHHHHHHHhhCchHHHH
Confidence 321 111112232 4566666666543 356777777777877632 2222222 246677777776432 33332
Q ss_pred hHHHHHHHHHHHHHh-hchhccccchHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcc
Q 001584 520 SRARATELLGLVAES-VGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLE 578 (1049)
Q Consensus 520 ~r~~a~~~l~~l~~~-~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~ 578 (1049)
-..+-++..+... -..+.+... .++...++..+++.+..+|+.+-.++.-+++.-+
T Consensus 596 --lQil~~f~~ll~h~~tr~~ll~~-~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 596 --LQILYVFYQLLFHEETREVLLKE-TEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred --HHHHHHHHHHHcChHHHHHHHhc-cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 2334444444321 111122111 2466677788889999999999999998887654
No 99
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.0012 Score=71.47 Aligned_cols=287 Identities=18% Similarity=0.158 Sum_probs=167.4
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCC
Q 001584 159 DMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA 238 (1049)
Q Consensus 159 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 238 (1049)
.+..-+..+..+ .+..||..|++++..+-+... + -..+.+...+.+.+.++++++.|++.+.-.....|
T Consensus 198 ~~~~~l~~~~~~-~D~~Vrt~A~eglL~L~eg~k-------L---~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p 266 (823)
T KOG2259|consen 198 HAARGLIYLEHD-QDFRVRTHAVEGLLALSEGFK-------L---SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCP 266 (823)
T ss_pred HHHHHHHHHhcC-CCcchHHHHHHHHHhhccccc-------c---cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCC
Confidence 344446666667 899999999999887766321 1 12233444455778888999999888887776653
Q ss_pred cch------hhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHH-HHhhhhc---------
Q 001584 239 PLL------GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQ-VMCPLLA--------- 302 (1049)
Q Consensus 239 ~~~------~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~-~l~~~l~--------- 302 (1049)
.-. .......+.-++....+ .+-.+|..|.+.++.+-..+...+ .+.+. .++..+.
T Consensus 267 ~~~e~e~~e~kl~D~aF~~vC~~v~D--~sl~VRV~AaK~lG~~~~vSee~i------~QTLdKKlms~lRRkr~ahkrp 338 (823)
T KOG2259|consen 267 APLERESEEEKLKDAAFSSVCRAVRD--RSLSVRVEAAKALGEFEQVSEEII------QQTLDKKLMSRLRRKRTAHKRP 338 (823)
T ss_pred CcccchhhhhhhHHHHHHHHHHHHhc--CceeeeehHHHHhchHHHhHHHHH------HHHHHHHHhhhhhhhhhcccch
Confidence 111 11222233333333333 366788888888887754332211 11111 1111110
Q ss_pred -------------cCCCC---CCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhh
Q 001584 303 -------------ESNEA---GEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISE 366 (1049)
Q Consensus 303 -------------~~~~~---~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~ 366 (1049)
+|.+| +++|+.+..-.... ....+.-.+.+.-..+|.+|+..+..++-
T Consensus 339 k~l~s~GewSsGk~~~advpsee~d~~~~siI~sG----------------ACGA~VhGlEDEf~EVR~AAV~Sl~~La~ 402 (823)
T KOG2259|consen 339 KALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSG----------------ACGALVHGLEDEFYEVRRAAVASLCSLAT 402 (823)
T ss_pred HHHHhcCCcccCccccccCchhhcccccccccccc----------------ccceeeeechHHHHHHHHHHHHHHHHHHc
Confidence 01111 00111010000000 00111122344446799999999999987
Q ss_pred cChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHH
Q 001584 367 GCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAF 446 (1049)
Q Consensus 367 ~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l 446 (1049)
..+.. -..-+..++..++|+...||..|+++|..++..+. + -++.++.++..|.|.+..||.+.-..|.
T Consensus 403 ssP~F----A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~--i---~eeql~~il~~L~D~s~dvRe~l~elL~-- 471 (823)
T KOG2259|consen 403 SSPGF----AVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA--I---REEQLRQILESLEDRSVDVREALRELLK-- 471 (823)
T ss_pred CCCCc----HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe--e---cHHHHHHHHHHHHhcCHHHHHHHHHHHH--
Confidence 65543 23457778888999999999999999999988753 2 2357888899999999999976555544
Q ss_pred HHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhh
Q 001584 447 CEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQA 494 (1049)
Q Consensus 447 ~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~ 494 (1049)
.+.-.-..-+...+..++..+... ++=|...+.|++.++...+..
T Consensus 472 --~~~~~d~~~i~m~v~~lL~~L~ky-PqDrd~i~~cm~~iGqnH~~l 516 (823)
T KOG2259|consen 472 --NARVSDLECIDMCVAHLLKNLGKY-PQDRDEILRCMGRIGQNHRRL 516 (823)
T ss_pred --hcCCCcHHHHHHHHHHHHHHhhhC-CCCcHHHHHHHHHHhccChhh
Confidence 332111234455566666665543 334677888888887765543
No 100
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.25 E-value=0.00016 Score=74.91 Aligned_cols=191 Identities=16% Similarity=0.132 Sum_probs=135.8
Q ss_pred CCHHHHHHHHHHHH-HHhccCCcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHH
Q 001584 218 GEEDVAVIAFEIFD-ELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQV 296 (1049)
Q Consensus 218 ~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~ 296 (1049)
+..+.+.+++.-|. -+.+.......+++..++..+++++++. .++..|..|+.++..++...+..+.+. .+-.+..
T Consensus 299 e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~-~~~~~k~laLrvL~~ml~~Q~~~l~Ds--tE~ai~K 375 (516)
T KOG2956|consen 299 ERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDS-EDEIIKKLALRVLREMLTNQPARLFDS--TEIAICK 375 (516)
T ss_pred cchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccc-hhhHHHHHHHHHHHHHHHhchHhhhch--HHHHHHH
Confidence 34456667766444 4455566677889999999999988764 267889999999999998887765442 2222222
Q ss_pred HhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcCh-HHHHHh
Q 001584 297 MCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA-EWMKEK 375 (1049)
Q Consensus 297 l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~-~~~~~~ 375 (1049)
.+..-.+.. +...+.++..|+..++...|...+..+-+.|.. .|...-.+++..+..+.+... +.+...
T Consensus 376 ~Leaa~ds~------~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~~l 445 (516)
T KOG2956|consen 376 VLEAAKDSQ------DEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEELLNL 445 (516)
T ss_pred HHHHHhCCc------hhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHHHh
Confidence 222222221 125566777788889988886555556665543 455555566778899998864 566777
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhc-HHHHhhhhhHH
Q 001584 376 LESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ-PEIVSHYESVL 421 (1049)
Q Consensus 376 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~ll 421 (1049)
++++.|.+++...+.+..||.+|.+||..+...++ ..+.+|+.++-
T Consensus 446 l~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt 492 (516)
T KOG2956|consen 446 LPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLT 492 (516)
T ss_pred hhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhcc
Confidence 99999999999999999999999999999999888 66777765543
No 101
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=0.0037 Score=61.62 Aligned_cols=341 Identities=18% Similarity=0.206 Sum_probs=186.0
Q ss_pred HHHHHH---HHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhh-HHH
Q 001584 132 EEHREV---ALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFI-PSI 207 (1049)
Q Consensus 132 ~~~~~~---al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~l 207 (1049)
.++|+. .+.|+..+...... ....+++++.+..+|.. ++..|+..+++.++.+++..+.+. .......+ ..+
T Consensus 54 enhrekttlcVscLERLfkakeg--ahlapnlmpdLQrGLia-ddasVKiLackqigcilEdcDtna-VseillvvNaei 129 (524)
T KOG4413|consen 54 ENHREKTTLCVSCLERLFKAKEG--AHLAPNLMPDLQRGLIA-DDASVKILACKQIGCILEDCDTNA-VSEILLVVNAEI 129 (524)
T ss_pred ccccchhhhHHHHHHHHHhhccc--hhhchhhhHHHHhcccC-CcchhhhhhHhhhhHHHhcCchhh-HHHHHHHhhhhH
Confidence 345555 55666666654332 23457889999999998 888899999999999998876432 21111111 223
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHH-HHHHH--HHHhhhCCCCChHHHHHHHHHHHHHHhhhHhh-
Q 001584 208 LNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHF--SLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS- 283 (1049)
Q Consensus 208 l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~--l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~- 283 (1049)
+..+..++..++.++++.+.+.+..++..... +...++ ++.+- +.++.. ..++-.|...++++..+.+.+|..
T Consensus 130 lklildcIggeddeVAkAAiesikrialfpaa-leaiFeSellDdlhlrnlaa--kcndiaRvRVleLIieifSiSpesa 206 (524)
T KOG4413|consen 130 LKLILDCIGGEDDEVAKAAIESIKRIALFPAA-LEAIFESELLDDLHLRNLAA--KCNDIARVRVLELIIEIFSISPESA 206 (524)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHH-HHHhcccccCChHHHhHHHh--hhhhHHHHHHHHHHHHHHhcCHHHH
Confidence 33444456778888999999999988754211 111000 00000 000111 124556777778777776655543
Q ss_pred --hhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHc-chhch--HHHHHHHHhhhc--CCChhHHhH
Q 001584 284 --LKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNL-AKHVF--PPVFEFASVSCQ--NASPKYREA 356 (1049)
Q Consensus 284 --~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~-~~~~~--~~ll~~l~~~l~--~~~~~~r~~ 356 (1049)
+++++ ++..+..-|...++ .-++....+....++..- |.+++ ..+++.+.+.+. +.++..+.-
T Consensus 207 neckkSG----LldlLeaElkGteD------tLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfr 276 (524)
T KOG4413|consen 207 NECKKSG----LLDLLEAELKGTED------TLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFR 276 (524)
T ss_pred hHhhhhh----HHHHHHHHhcCCcc------eeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHH
Confidence 23322 34444444443322 134444444445555432 33343 346666666554 356777777
Q ss_pred HHHHHHHHhhc------ChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcH-HH-HhhhhhHHHHHHHhc
Q 001584 357 AVTAIGIISEG------CAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP-EI-VSHYESVLPCILNAL 428 (1049)
Q Consensus 357 al~~l~~i~~~------~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~-~~~~~~ll~~l~~~l 428 (1049)
++..++.+... .++.+-+.+...+...+..+...+|....+|..++|.+...... ++ ...-++-...++...
T Consensus 277 almgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllara 356 (524)
T KOG4413|consen 277 ALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARA 356 (524)
T ss_pred HHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHH
Confidence 77777766543 22333333444455566666667778899999999999876532 11 111122333444444
Q ss_pred cCCC-hHHHHHHHHHHHHHHHhhc---ccccc----------chH--------HHHHHHHHhhcCCCHhHHHHHHHHHHH
Q 001584 429 EDES-DEVKEKSYYALAAFCEDMG---EEILP----------FLD--------PLMGKLLAALENSPRNLQETCMSAIGS 486 (1049)
Q Consensus 429 ~~~~-~~v~~~a~~~l~~l~~~~~---~~l~~----------~~~--------~ll~~l~~~l~~~~~~v~~~~~~~l~~ 486 (1049)
.+.+ ..-+..+..+|..+..... +.+.. +++ .-+..+...++.+.+.++..++..+..
T Consensus 357 fdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTA 436 (524)
T KOG4413|consen 357 FDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTA 436 (524)
T ss_pred hcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHH
Confidence 4443 2334667777777765431 11111 011 112233444566678888888888877
Q ss_pred HHH
Q 001584 487 VAA 489 (1049)
Q Consensus 487 l~~ 489 (1049)
++.
T Consensus 437 iaa 439 (524)
T KOG4413|consen 437 IAA 439 (524)
T ss_pred HHc
Confidence 764
No 102
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=98.22 E-value=0.019 Score=73.00 Aligned_cols=295 Identities=8% Similarity=0.079 Sum_probs=177.1
Q ss_pred CCChhHHHHHHHHHHHhhhhhcc--CCC-HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccC--CCCCCcchHH
Q 001584 47 AKTPNVRQLAAVLLRKKITGHWA--KLS-PQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAV--PAGEWPDLLP 121 (1049)
Q Consensus 47 ~~~~~~R~~a~~~l~~~i~~~w~--~~~-~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~--~~~~w~~ll~ 121 (1049)
+.+..++.+|.-.||+.-.+... .+. -..++.+...+...+.+..+..+|..+.+++..+..... -...|..++.
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~ 1227 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFM 1227 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 34678899999888887555432 121 134555556666666666788999999999998765221 1258999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhhhhhhcc----cccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCC----
Q 001584 122 FLFQFSQSEQEEHREVALILFSSLTETIGQTF----RPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTND---- 193 (1049)
Q Consensus 122 ~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~----~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~---- 193 (1049)
.+-....+..+.....|+..+..++...-..+ ...+..++..+.+......+.++-..|+..|..+..+..+
T Consensus 1228 VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~ 1307 (1780)
T PLN03076 1228 VFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLG 1307 (1780)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccc
Confidence 99988888888888999999998876643322 2456677777776665423455555666665544221100
Q ss_pred ----------------------h-----hhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhh---
Q 001584 194 ----------------------G-----AEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGD--- 243 (1049)
Q Consensus 194 ----------------------~-----~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~--- 243 (1049)
. ........++-+++..+.....+...++|..|+..|-.++..++..|.+
T Consensus 1308 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W 1387 (1780)
T PLN03076 1308 SSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLW 1387 (1780)
T ss_pred ccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 0 0001112455556666666677788899999999998888776665554
Q ss_pred --hHHHHHHHHHHhhhCC---------------------CCChHHHHHHHHHHHHHHhhhHhhhhhc-CChHHHHHHHhh
Q 001584 244 --SVKSIVHFSLEVSSSH---------------------NLEPNTRHQAIQIISWLAKYKYNSLKKH-KLVIPILQVMCP 299 (1049)
Q Consensus 244 --~~~~l~~~l~~~~~~~---------------------~~~~~~r~~a~~~l~~l~~~~~~~~~~~-~~~~~il~~l~~ 299 (1049)
.+..++-.++..+... +.+.-....+..++..++......+..- ..++.++..+..
T Consensus 1388 ~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ 1467 (1780)
T PLN03076 1388 ERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVS 1467 (1780)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443343332210 0011123344444444444333322211 133444444444
Q ss_pred hhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc----hhchHHHHHHHHhhhcC
Q 001584 300 LLAESNEAGEDDDLAPDRAAAEVIDTMALNLA----KHVFPPVFEFASVSCQN 348 (1049)
Q Consensus 300 ~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~----~~~~~~ll~~l~~~l~~ 348 (1049)
.++...+ ...+.+..|+..+....| ++.|..++..+.+.+..
T Consensus 1468 ci~q~n~-------~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~~ 1513 (1780)
T PLN03076 1468 FIKRPHQ-------SLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAANA 1513 (1780)
T ss_pred HHcCchH-------HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 4444433 678888889988887666 56677777777666543
No 103
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.20 E-value=0.00013 Score=75.55 Aligned_cols=205 Identities=12% Similarity=0.155 Sum_probs=144.7
Q ss_pred HHHhhcC-CCChhHHHHHHHHHHHhHhhhc-HHHHhhhhhHHHHHHHhccC-CChHHHHHHHHHHHHHHHhhccccccch
Q 001584 382 IVLGALR-DPEQFVRGAASFALGQFAEYLQ-PEIVSHYESVLPCILNALED-ESDEVKEKSYYALAAFCEDMGEEILPFL 458 (1049)
Q Consensus 382 ~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~ll~~l~~~l~~-~~~~v~~~a~~~l~~l~~~~~~~l~~~~ 458 (1049)
..+..++ +....-|..|..-|-.+...-. .-+.+|+.+++-.+++.|.| .+...+..|+..|..++.+-+..+..+.
T Consensus 290 ~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~Dst 369 (516)
T KOG2956|consen 290 DLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDST 369 (516)
T ss_pred HHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchH
Confidence 3334444 3344556666664444433221 23457889999999999999 5677888899999999999988888888
Q ss_pred HHHHHHHHHhhcCCCHhHHHHHHHH-HHHHHHHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhch
Q 001584 459 DPLMGKLLAALENSPRNLQETCMSA-IGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGR 537 (1049)
Q Consensus 459 ~~ll~~l~~~l~~~~~~v~~~~~~~-l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~ 537 (1049)
+..+..++..-.+.+.++-..|-++ +..++...|. ..+..+..++...+++. -..++.++..+...+..
T Consensus 370 E~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~-------~~I~~i~~~Ilt~D~~~---~~~~iKm~Tkl~e~l~~ 439 (516)
T KOG2956|consen 370 EIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL-------QCIVNISPLILTADEPR---AVAVIKMLTKLFERLSA 439 (516)
T ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch-------hHHHHHhhHHhcCcchH---HHHHHHHHHHHHhhcCH
Confidence 8888888888777776655544444 4444433321 11122222232233321 12356788888888888
Q ss_pred hccccchHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcc-cCccCchhhhhHHHHhhc
Q 001584 538 ARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLE-DGFAQYLPLVVPLAFSSC 596 (1049)
Q Consensus 538 ~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~-~~~~~~l~~i~~~ll~~~ 596 (1049)
+.+.+.++.+++.++++.++.+..+|+.+..|+-.|....| +.+.||+.++-..-++.+
T Consensus 440 EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~Ll 499 (516)
T KOG2956|consen 440 EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLL 499 (516)
T ss_pred HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHH
Confidence 88999999999999999999999999999999999999999 999999988755544443
No 104
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.19 E-value=0.067 Score=69.53 Aligned_cols=186 Identities=15% Similarity=0.127 Sum_probs=112.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhc----------CCCcHHHH---HHHHhcCCChhHHHHHHHHHHHhhhhhccCC
Q 001584 5 LELLLIQFLMPDNDARRQAEDQIKRLAK----------DPQVVPAL---VQHLRTAKTPNVRQLAAVLLRKKITGHWAKL 71 (1049)
Q Consensus 5 l~~ll~~~~s~d~~~r~~a~~~L~~~~~----------~p~~~~~l---~~il~~~~~~~~R~~a~~~l~~~i~~~w~~~ 71 (1049)
+.+....+.+.+...+.+|..++...-. .|.|...+ +.++.++.....|.-++.+....+.-.|..-
T Consensus 7 ~~~~~~~l~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~f~~~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~ 86 (2341)
T KOG0891|consen 7 LKQYFSGLKSRNKSEQAQAARELFNYVTSELRELSAEESARFSNDLNHNIFELVHCLDSNERIGGILAIALLISFEGTEH 86 (2341)
T ss_pred HHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccchhhHHHHHHHHHhhhccc
Confidence 3444555556666677777777754321 12221111 1122223233334222222222222126655
Q ss_pred CHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCC--CCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhh
Q 001584 72 SPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVP--AGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETI 149 (1049)
Q Consensus 72 ~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~--~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~ 149 (1049)
+......+.+.+...+.+ .+..+-..++..++..+..... .+.-..-...+++++.+...--|..|+.....+....
T Consensus 87 ~~~~~s~~~n~l~~l~~~-~~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~ 165 (2341)
T KOG0891|consen 87 DRKNISRLANYLRYLLPS-NDVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNV 165 (2341)
T ss_pred ccchhHhHHHHHHHhhcc-CChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcC
Confidence 555566677777777775 5777777777788776643211 1122334556666774444455678888888898888
Q ss_pred hhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccC
Q 001584 150 GQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTN 192 (1049)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~ 192 (1049)
|..+.++++.++..+...+.+ +++.+|..|+.++..+.....
T Consensus 166 P~~~~~~~~~~~~~i~~~~~~-~~~~i~~~a~~al~~~~~~~~ 207 (2341)
T KOG0891|consen 166 PTFFYPYVNKFFKNIFAALRD-PKPAIRLQACSALHAVLSSLA 207 (2341)
T ss_pred cHHHHHHHHHHHHHHHHhccC-CChhhhHHHHHHHHHHHhhhh
Confidence 888888899999999999888 999999999999877765543
No 105
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.19 E-value=0.026 Score=64.55 Aligned_cols=152 Identities=13% Similarity=0.125 Sum_probs=103.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHh-cCCCcHHHHHHHHhc---CCChhHHHHHHHHHHHhhhhhccCCCHHHHH
Q 001584 2 AQSLELLLIQFLMPDNDARRQAEDQIKRLA-KDPQVVPALVQHLRT---AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQ 77 (1049)
Q Consensus 2 ~~~l~~ll~~~~s~d~~~r~~a~~~L~~~~-~~p~~~~~l~~il~~---~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~ 77 (1049)
..=+..++.++.+.|.+.+|=.--.|..+. .+|+-....++.+++ ++++.+|.+|...+... =.++...
T Consensus 54 ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l-------~~~el~~ 126 (757)
T COG5096 54 SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLL-------RVKELLG 126 (757)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc-------ChHHHHH
Confidence 334667888888888888888888887765 467655555555554 57899999887666443 0234555
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcc--hHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccc
Q 001584 78 LVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPD--LLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRP 155 (1049)
Q Consensus 78 ~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~--ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~ 155 (1049)
.+...+.+++. ++++.||+.++.++..+.+..- ...++ ++..+..++.+.++.+...|+..+..+.+.. ...
T Consensus 127 ~~~~~ik~~l~-d~~ayVRk~Aalav~kly~ld~--~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~---a~~ 200 (757)
T COG5096 127 NIIDPIKKLLT-DPHAYVRKTAALAVAKLYRLDK--DLYHELGLIDILKELVADSDPIVIANALASLAEIDPEL---AHG 200 (757)
T ss_pred HHHHHHHHHcc-CCcHHHHHHHHHHHHHHHhcCH--hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchhh---hhh
Confidence 56666666666 5899999999999999987542 23433 3555566677889999999998888887652 234
Q ss_pred cHHHHHHHHHH
Q 001584 156 HFADMQALLLK 166 (1049)
Q Consensus 156 ~~~~l~~~l~~ 166 (1049)
+...+...+.+
T Consensus 201 ~~~~~~~~i~~ 211 (757)
T COG5096 201 YSLEVILRIPQ 211 (757)
T ss_pred HHHHHHHHhhh
Confidence 44444444444
No 106
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.18 E-value=5.4e-05 Score=87.27 Aligned_cols=204 Identities=18% Similarity=0.182 Sum_probs=159.6
Q ss_pred hhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcCh-HHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhc
Q 001584 332 KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA-EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ 410 (1049)
Q Consensus 332 ~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 410 (1049)
.++++.+-+.+...+.+.+|+.|..|+..+..+.+... .....+...+...+-..+.|.+..|-..|..+|..++..++
T Consensus 248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr 327 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR 327 (815)
T ss_pred hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc
Confidence 45556666677777889999999999999988887765 22233344445555566679999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHH
Q 001584 411 PEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAA 490 (1049)
Q Consensus 411 ~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~ 490 (1049)
..+.+|...++|.++..+.+..+.++..+..++..++..+ .+..+.+.+...+.+.++..+..+...++.....
T Consensus 328 ~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~ 401 (815)
T KOG1820|consen 328 PLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRK 401 (815)
T ss_pred hhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhh
Confidence 9899999999999999999999999999999999888733 3566777788888999999999999999988877
Q ss_pred hhhh--ccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccch
Q 001584 491 AEQA--FIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPIL 544 (1049)
Q Consensus 491 ~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~ 544 (1049)
.+.. +..-...+.|.+..... |.+..+|..|.++++.+.+..|.+.+..++
T Consensus 402 ~~~~~~~~~t~~~l~p~~~~~~~---D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L 454 (815)
T KOG1820|consen 402 LGPKTVEKETVKTLVPHLIKHIN---DTDKDVRKAALEAVAAVMKVHGEEVFKKLL 454 (815)
T ss_pred cCCcCcchhhHHHHhHHHhhhcc---CCcHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7632 22334567777666554 344568999999999999999875554444
No 107
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.0093 Score=65.32 Aligned_cols=318 Identities=12% Similarity=0.135 Sum_probs=174.5
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhhh-hhhcccccHHHHHHHHHHhhCC-CCChHHHHHHHHHHHHhhcccCChhhHHH
Q 001584 122 FLFQFSQSEQEEHREVALILFSSLTET-IGQTFRPHFADMQALLLKCLQD-ETSNRVRIAALKAIGSFLEFTNDGAEVVK 199 (1049)
Q Consensus 122 ~l~~~l~~~~~~~~~~al~~l~~l~~~-~~~~~~~~~~~l~~~l~~~l~~-~~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 199 (1049)
.+..=+.+.++.....|+.+++.+-.. ..+.+ .+++- +.|.+ +....||..|.-|+.++.+..++-. .
T Consensus 115 ~iknDL~srn~~fv~LAL~~I~niG~re~~ea~---~~DI~----KlLvS~~~~~~vkqkaALclL~L~r~spDl~---~ 184 (938)
T KOG1077|consen 115 SIKNDLSSRNPTFVCLALHCIANIGSREMAEAF---ADDIP----KLLVSGSSMDYVKQKAALCLLRLFRKSPDLV---N 184 (938)
T ss_pred HHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHh---hhhhH----HHHhCCcchHHHHHHHHHHHHHHHhcCcccc---C
Confidence 333335566777777788888776432 22222 22222 33332 2456789999889888888765421 1
Q ss_pred HHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhhhCCCCC-----------hHHHHH
Q 001584 200 FREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLE-----------PNTRHQ 268 (1049)
Q Consensus 200 ~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----------~~~r~~ 268 (1049)
-+.+...++.. +.+.+..+...+...+..++...++.++..++.-+..+..++.....+ +-....
T Consensus 185 ~~~W~~riv~L----L~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 185 PGEWAQRIVHL----LDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred hhhHHHHHHHH----hCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 23344445543 455555555666677777777777777666665555555444333222 112222
Q ss_pred HHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHH-HHHHHHHHHHHcc--hhchHHHHHHHHhh
Q 001584 269 AIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRA-AAEVIDTMALNLA--KHVFPPVFEFASVS 345 (1049)
Q Consensus 269 a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~-a~~~l~~l~~~~~--~~~~~~ll~~l~~~ 345 (1049)
.+.++..+-.......+ .-+..+++.++....+.-...+-.......+ ..+++.-+ .++. ...+......+-++
T Consensus 261 l~rlLq~~p~~~D~~~r--~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~-~h~D~e~~ll~~~~~~Lg~f 337 (938)
T KOG1077|consen 261 LLRLLQIYPTPEDPSTR--ARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLA-IHLDSEPELLSRAVNQLGQF 337 (938)
T ss_pred HHHHHHhCCCCCCchHH--HHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHH
Confidence 22222222100000000 0111222222222221111000000011111 12222222 2222 34455555666667
Q ss_pred hcCCChhHHhHHHHHHHHHhhcC--hHHHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHH
Q 001584 346 CQNASPKYREAAVTAIGIISEGC--AEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLP 422 (1049)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~~--~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~ 422 (1049)
+.+.....|+-|+..+..++... .+.++.| .+.++..|+ +++..||..|...|..+|..- ....++.
T Consensus 338 ls~rE~NiRYLaLEsm~~L~ss~~s~davK~h----~d~Ii~sLkterDvSirrravDLLY~mcD~~------Nak~IV~ 407 (938)
T KOG1077|consen 338 LSHRETNIRYLALESMCKLASSEFSIDAVKKH----QDTIINSLKTERDVSIRRRAVDLLYAMCDVS------NAKQIVA 407 (938)
T ss_pred hhcccccchhhhHHHHHHHHhccchHHHHHHH----HHHHHHHhccccchHHHHHHHHHHHHHhchh------hHHHHHH
Confidence 78888889999998888876642 3444554 456667777 889999999999999988753 3455888
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHH
Q 001584 423 CILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLL 466 (1049)
Q Consensus 423 ~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~ 466 (1049)
.++++|...+..+|+....-..-+.+.+..+..=|++-+++.+.
T Consensus 408 elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLir 451 (938)
T KOG1077|consen 408 ELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIR 451 (938)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 88888888888899887777777788877666666666655443
No 108
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.013 Score=64.94 Aligned_cols=403 Identities=14% Similarity=0.160 Sum_probs=213.1
Q ss_pred CCCcchHHHHHHhcc-CCCHHHHHHHHHHHHHhhhhhhhcccccHHH---HHHHHHHhhCCCCChHHHHHHHHHHHHhhc
Q 001584 114 GEWPDLLPFLFQFSQ-SEQEEHREVALILFSSLTETIGQTFRPHFAD---MQALLLKCLQDETSNRVRIAALKAIGSFLE 189 (1049)
Q Consensus 114 ~~w~~ll~~l~~~l~-~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~---l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~ 189 (1049)
+..|.++-.+.+..- +.+-..+. -+..+..++...... ...+.+ +...+.+=|++ ++..+|-..++.++.+-+
T Consensus 52 e~~p~Llm~IiRfvlps~~~elKK-Lly~ywE~vPKt~~d-gkl~~EMILvcna~RkDLQH-PNEyiRG~TLRFLckLkE 128 (948)
T KOG1058|consen 52 EDLPSLLMTIIRFVLPSRNHELKK-LLYYYWELVPKTDSD-GKLLHEMILVCNAYRKDLQH-PNEYIRGSTLRFLCKLKE 128 (948)
T ss_pred CCchHHHHHHhheeeccCchHHHH-HHHHHHHHccccCCC-cccHHHHHHHHHHHhhhccC-chHhhcchhhhhhhhcCc
Confidence 356777777666543 33333333 334444443332211 122333 33566667777 999999999988765532
Q ss_pred ccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhhhCCCCChHHHHHH
Q 001584 190 FTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQA 269 (1049)
Q Consensus 190 ~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a 269 (1049)
..++.+++..+..++.....=+|+.|.-++..+.... ..+-+-.++++.-.+. .+.|+..++.|
T Consensus 129 -----------~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~-~~L~pDapeLi~~fL~----~e~DpsCkRNA 192 (948)
T KOG1058|consen 129 -----------PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF-EHLIPDAPELIESFLL----TEQDPSCKRNA 192 (948)
T ss_pred -----------HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh-hhhcCChHHHHHHHHH----hccCchhHHHH
Confidence 2334455555566777777778888877777776552 2223334455543332 23477888887
Q ss_pred HHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCC
Q 001584 270 IQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNA 349 (1049)
Q Consensus 270 ~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~ 349 (1049)
+-.+..+-. .... +|+...+.. ....++ .......+.+...+...+ ..-...+..+.+++.+.
T Consensus 193 Fi~L~~~D~---ErAl--~Yl~~~idq----i~~~~~-------~LqlViVE~Irkv~~~~p-~~~~~~i~~i~~lL~st 255 (948)
T KOG1058|consen 193 FLMLFTTDP---ERAL--NYLLSNIDQ----IPSFND-------SLQLVIVELIRKVCLANP-AEKARYIRCIYNLLSST 255 (948)
T ss_pred HHHHHhcCH---HHHH--HHHHhhHhh----ccCccH-------HHHHHHHHHHHHHHhcCH-HHhhHHHHHHHHHHhcC
Confidence 766554431 1111 122111111 111111 223333344444443222 11123556666677777
Q ss_pred ChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcc
Q 001584 350 SPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALE 429 (1049)
Q Consensus 350 ~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~ 429 (1049)
+..++..|...+-.++.. +..++.....++..+... ++-.|......-|..+.. .....++.++-.+++.|.
T Consensus 256 ssaV~fEaa~tlv~lS~~-p~alk~Aa~~~i~l~~ke---sdnnvklIvldrl~~l~~----~~~~il~~l~mDvLrvLs 327 (948)
T KOG1058|consen 256 SSAVIFEAAGTLVTLSND-PTALKAAASTYIDLLVKE---SDNNVKLIVLDRLSELKA----LHEKILQGLIMDVLRVLS 327 (948)
T ss_pred CchhhhhhcceEEEccCC-HHHHHHHHHHHHHHHHhc---cCcchhhhhHHHHHHHhh----hhHHHHHHHHHHHHHHcC
Confidence 777776655555444432 334444444445444432 333444444444444432 223456667777888999
Q ss_pred CCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhc-------CCCHhHHHHHHHHHHHHHHHhhhhccccHHHH
Q 001584 430 DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALE-------NSPRNLQETCMSAIGSVAAAAEQAFIPYAERV 502 (1049)
Q Consensus 430 ~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~-------~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~ 502 (1049)
.++-.||..++...-.++..- .+++++..|..-+. +.+.+.|...++++.+.+- .|..+...+
T Consensus 328 s~dldvr~Ktldi~ldLvssr------Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav----~Fp~~aatv 397 (948)
T KOG1058|consen 328 SPDLDVRSKTLDIALDLVSSR------NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAV----KFPEVAATV 397 (948)
T ss_pred cccccHHHHHHHHHHhhhhhc------cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhh----cChHHHHHH
Confidence 999999998887766665432 23444444433322 1345678888888876654 566678889
Q ss_pred HHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccC-CCCchhhHHHHHHHHHHHHHcc
Q 001584 503 LELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFG-LEFSELREYTHGFFSNIAGVLE 578 (1049)
Q Consensus 503 ~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~-~~~~~~r~~~~~~l~~l~~~~~ 578 (1049)
+|.+.+.+...+.. .|...+..+-..+ +.|...-..++..+++.+. -....+.+.+++.+|..|+...
T Consensus 398 V~~ll~fisD~N~~------aas~vl~FvrE~i--ek~p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 398 VSLLLDFISDSNEA------AASDVLMFVREAI--EKFPNLRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHhccCCHH------HHHHHHHHHHHHH--HhCchHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 99999988654322 1222222222222 2333333345555554432 1234566677777777776554
No 109
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.023 Score=62.46 Aligned_cols=488 Identities=13% Similarity=0.158 Sum_probs=253.1
Q ss_pred hhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHH
Q 001584 344 VSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPC 423 (1049)
Q Consensus 344 ~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~ 423 (1049)
+++++..+..+..+...++.+.+...+. ++-++..+.+-+...++.-..-|+.+++.+.+. ++.+.+..=+|.
T Consensus 81 ~LLss~kysEKqIGYl~is~L~n~n~dl----~klvin~iknDL~srn~~fv~LAL~~I~niG~r---e~~ea~~~DI~K 153 (938)
T KOG1077|consen 81 NLLSSNKYSEKQIGYLFISLLLNENSDL----MKLVINSIKNDLSSRNPTFVCLALHCIANIGSR---EMAEAFADDIPK 153 (938)
T ss_pred HHhhcCCccHHHHhHHHHHHHHhcchHH----HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH---hHHHHhhhhhHH
Confidence 4567777888888888888888875443 334556666667777888888999999888654 222322223333
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhccccHHHHH
Q 001584 424 ILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVL 503 (1049)
Q Consensus 424 l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~ 503 (1049)
++.. .+..+-|+..|+-||-.+.+..++.+.+ ..-.+.+..++++.+-.|-..+...+..++...++.+..-+...+
T Consensus 154 lLvS-~~~~~~vkqkaALclL~L~r~spDl~~~--~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~av 230 (938)
T KOG1077|consen 154 LLVS-GSSMDYVKQKAALCLLRLFRKSPDLVNP--GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAV 230 (938)
T ss_pred HHhC-CcchHHHHHHHHHHHHHHHhcCccccCh--hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHH
Confidence 3322 2334679999999999999887765543 344556677788887777777777777666655443322222222
Q ss_pred HHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchh--c----cccchHHHHHHHH---hcc-CCCCchhhHHHHHHHHHH
Q 001584 504 ELLKIFMVLTNDEDLRSRARATELLGLVAESVGRA--R----MEPILPPFVEAAI---SGF-GLEFSELREYTHGFFSNI 573 (1049)
Q Consensus 504 ~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~--~----~~~~~~~i~~~l~---~~l-~~~~~~~r~~~~~~l~~l 573 (1049)
.. ++.++...|.+ . +.| .|++.-.++ +.+ ..+++..|.....++.++
T Consensus 231 s~----------------------L~riv~~~~t~~qdYTyy~vP-~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~i 287 (938)
T KOG1077|consen 231 SR----------------------LSRIVVVVGTSLQDYTYYFVP-APWLQVKLLRLLQIYPTPEDPSTRARLNEVLERI 287 (938)
T ss_pred HH----------------------HHHHHhhcccchhhceeecCC-ChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHH
Confidence 22 22222222211 0 111 122222222 222 134566676666666655
Q ss_pred HHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCchhhhccCCCCCCCcchhhcccccceeeeccchhhHHHHHHHHH
Q 001584 574 AGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALG 653 (1049)
Q Consensus 574 ~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~ 653 (1049)
.....+- + ..++. +.. ..|.+.+--.-
T Consensus 288 Lnk~~~~-------------------~------------------------------~~k~v--q~~--na~naVLFeaI 314 (938)
T KOG1077|consen 288 LNKAQEP-------------------P------------------------------KSKKV--QHS--NAKNAVLFEAI 314 (938)
T ss_pred HhccccC-------------------c------------------------------cccch--Hhh--hhHHHHHHHHH
Confidence 5432210 0 00000 000 02222222222
Q ss_pred HHHHHhhhhchhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHhhhCC
Q 001584 654 LFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDD 733 (1049)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 733 (1049)
.++.++... ..-+..++..+..++.+...++|.-|.+.++.++.+ ....+.++...+.++ ..+..|.
T Consensus 315 ~l~~h~D~e-~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss--------~~s~davK~h~d~Ii----~sLkter 381 (938)
T KOG1077|consen 315 SLAIHLDSE-PELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS--------EFSIDAVKKHQDTII----NSLKTER 381 (938)
T ss_pred HHHHHcCCc-HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc--------cchHHHHHHHHHHHH----HHhcccc
Confidence 233332111 123556666666777777889999999999988765 223345555554444 4457788
Q ss_pred hHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhHHHHHHHHhHHHHHHHH
Q 001584 734 DKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKS 813 (1049)
Q Consensus 734 ~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 813 (1049)
|..++..+++.+..+++. ...+.|+..+++.|..... .-.++.+. =+..++..
T Consensus 382 DvSirrravDLLY~mcD~-------~Nak~IV~elLqYL~tAd~---------------sireeivl-----KvAILaEK 434 (938)
T KOG1077|consen 382 DVSIRRRAVDLLYAMCDV-------SNAKQIVAELLQYLETADY---------------SIREEIVL-----KVAILAEK 434 (938)
T ss_pred chHHHHHHHHHHHHHhch-------hhHHHHHHHHHHHHhhcch---------------HHHHHHHH-----HHHHHHHH
Confidence 999999999999887764 3456666666666654321 11222222 12456666
Q ss_pred hCCChHHHHHHHHHHHHHhhccCCCcccchhhhHhHHHHHhhcCCchhhcHhhhHHHHHHhcCCC--ChHhHHHHHHHHH
Q 001584 814 MGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASP--DAMNRRNAAFCVG 891 (1049)
Q Consensus 814 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~--~~~vr~~a~~~lg 891 (1049)
+..++.-|++.++.. ++...+-.+.++....+.++. ..+++.+|... .+.+.|+.+ ...+...+.|.||
T Consensus 435 yAtDy~WyVdviLqL-iriagd~vsdeVW~RvvQiVv-----Nnedlq~yaak---~~fe~Lq~~a~hE~mVKvggyiLG 505 (938)
T KOG1077|consen 435 YATDYSWYVDVILQL-IRIAGDYVSDEVWYRVVQIVV-----NNEDLQGYAAK---RLFEYLQKPACHENMVKVGGYILG 505 (938)
T ss_pred hcCCcchhHHHHHHH-HHHhcccccHHHHHHhheeEe-----cchhhhHHHHH---HHHHHHhhhHHHHHHHHhhhhhhh
Confidence 666777777776663 333333333333332222211 13344555321 222333322 2335566777788
Q ss_pred HHHhhcCc--chhhHHHHHHHhhhhhhCCCCCChhHHhhHHHHHHHHHHhCCCCCChhhHHHHHHhhCCCCCcHHhhHHH
Q 001584 892 ELCKNGGE--SALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAV 969 (1049)
Q Consensus 892 ~l~~~~~~--~~~~~~~~~l~~L~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~l~~~l~~lp~~~d~~e~~~~ 969 (1049)
+.....-+ ..+| ...+..++.-+. --...+|.-..+...+++...|+.- +.+..+|-....+ -|.|--..+
T Consensus 506 Efg~LIa~~prss~--~~qFsllh~K~~--~~s~~tr~lLLtTyiKl~nl~PEi~--~~v~~vFq~~~n~-~D~ElQqRa 578 (938)
T KOG1077|consen 506 EFGNLIADDPRSSP--AVQFSLLHEKLH--LCSPVTRALLLTTYIKLINLFPEIK--SNVQKVFQLYSNL-IDVELQQRA 578 (938)
T ss_pred hhhhhhcCCCCCCh--HHHHHHHHHHhc--cCChhHHHHHHHHHHHHHhhChhhh--HHHHHHHHhhccc-CCHHHHHHH
Confidence 76543322 1111 111222222111 1123344444555666666555432 3344444444433 355555555
Q ss_pred HHHH
Q 001584 970 YNCI 973 (1049)
Q Consensus 970 ~~~l 973 (1049)
++.|
T Consensus 579 ~EYL 582 (938)
T KOG1077|consen 579 VEYL 582 (938)
T ss_pred HHHH
Confidence 5544
No 110
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.10 E-value=7e-06 Score=60.58 Aligned_cols=55 Identities=31% Similarity=0.480 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHH
Q 001584 392 QFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAF 446 (1049)
Q Consensus 392 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l 446 (1049)
|.||.+|+++||.++...++...++.+.+++.|...|.|+++.||..|+++|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6899999999999998888888899999999999999999999999999999864
No 111
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.09 E-value=1.4e-05 Score=71.58 Aligned_cols=110 Identities=23% Similarity=0.326 Sum_probs=88.9
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhh-hHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccc
Q 001584 379 VLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE-SVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPF 457 (1049)
Q Consensus 379 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~ 457 (1049)
+++.+...+.++++.+|..++++++.++...++....... .++|.+++.+.+++++++..++++|.+++...+.....+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 6778888889999999999999999999875443344443 899999999999999999999999999987654322222
Q ss_pred h-HHHHHHHHHhhcCCCHhHHHHHHHHHHHHH
Q 001584 458 L-DPLMGKLLAALENSPRNLQETCMSAIGSVA 488 (1049)
Q Consensus 458 ~-~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~ 488 (1049)
. ..+++.+...+++.+..++..++.++..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 2 247888888888889999999999998775
No 112
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.0014 Score=73.06 Aligned_cols=438 Identities=12% Similarity=0.120 Sum_probs=222.7
Q ss_pred HHHHHHhccCC-CHHHHHHHHHHHHHhhhhhh----hccc-ccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCC
Q 001584 120 LPFLFQFSQSE-QEEHREVALILFSSLTETIG----QTFR-PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTND 193 (1049)
Q Consensus 120 l~~l~~~l~~~-~~~~~~~al~~l~~l~~~~~----~~~~-~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~ 193 (1049)
+..|++.+++. ++.. .++.+..+++... +.+. --++.++|.+...|++..+.++...|++|+..+++..+.
T Consensus 169 ~kkLL~gL~~~~Des~---Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQ---QLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred HHHHHHhccccCChHH---HHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 44555666554 4433 4445555554422 1122 235778999999999878899999999999999998875
Q ss_pred hhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchh--hhHHHHHHHHHHhhhCCCCChHHHHHHHH
Q 001584 194 GAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLG--DSVKSIVHFSLEVSSSHNLEPNTRHQAIQ 271 (1049)
Q Consensus 194 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~r~~a~~ 271 (1049)
.-....-..-+|.+++-+... +-.|++..++.+|..+...++.-+- ..+..++.++ ..+ +..+++.|+.
T Consensus 246 S~a~vV~~~aIPvl~~kL~~I---eyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~Lsyl-DFF-----Si~aQR~Ala 316 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTI---EYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYL-DFF-----SIHAQRVALA 316 (1051)
T ss_pred hhheeecccchHHHHHhhhhh---hhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHH-HHH-----HHHHHHHHHH
Confidence 422222234667777665432 5568899999999988877765331 1233333322 111 3456777887
Q ss_pred HHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc--hhch-----HHHHHHHHh
Q 001584 272 IISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA--KHVF-----PPVFEFASV 344 (1049)
Q Consensus 272 ~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~--~~~~-----~~ll~~l~~ 344 (1049)
....+++.-+.. ...++...++.+.+++...+. .+-.....|+.+++..+. .+.+ ..++..+.+
T Consensus 317 iaaN~Cksi~sd--~f~~v~ealPlL~~lLs~~D~-------k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~q 387 (1051)
T KOG0168|consen 317 IAANCCKSIRSD--EFHFVMEALPLLTPLLSYQDK-------KPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQ 387 (1051)
T ss_pred HHHHHHhcCCCc--cchHHHHHHHHHHHHHhhccc-------hhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHH
Confidence 777777543211 123677788888888887665 566667777877776554 2222 335555555
Q ss_pred hhcCC----ChhHHhHHHHHHHHHhhcChHHHHH----hHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcHHHHh
Q 001584 345 SCQNA----SPKYREAAVTAIGIISEGCAEWMKE----KLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVS 415 (1049)
Q Consensus 345 ~l~~~----~~~~r~~al~~l~~i~~~~~~~~~~----~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~ 415 (1049)
++.-. +-....+.+..+..++.+++..... .+...+..++..-. .++..+ .......+.+.-
T Consensus 388 Llsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~--------~~~l~r~Pnel~- 458 (1051)
T KOG0168|consen 388 LLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASL--------HELLSRSPNELY- 458 (1051)
T ss_pred HHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCccccc--------ccccccCcHHHH-
Confidence 44321 2234556677788888887754433 23333333333322 111111 001111111000
Q ss_pred hhhhHHHHHHHhccCCChHHH-HHHHHHHHHHHHh-------hccc--cccchHHHHHHHHHhhcCCC---HhHH-HHHH
Q 001584 416 HYESVLPCILNALEDESDEVK-EKSYYALAAFCED-------MGEE--ILPFLDPLMGKLLAALENSP---RNLQ-ETCM 481 (1049)
Q Consensus 416 ~~~~ll~~l~~~l~~~~~~v~-~~a~~~l~~l~~~-------~~~~--l~~~~~~ll~~l~~~l~~~~---~~v~-~~~~ 481 (1049)
.+...+...+-.....+. ..-|.....++.. .++. ..+-...+...++...+... .+++ ....
T Consensus 459 ---e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~ 535 (1051)
T KOG0168|consen 459 ---ELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNG 535 (1051)
T ss_pred ---HHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCC
Confidence 011111111111100000 0000000111111 1111 11122233334433333221 1111 1111
Q ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHH--HHHHHHhccCCCC
Q 001584 482 SAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPP--FVEAAISGFGLEF 559 (1049)
Q Consensus 482 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~--i~~~l~~~l~~~~ 559 (1049)
..=..+...-++.+..|...++|.|.++....-+++ +|-+++.++..+......+.+...+.. +-..+-..+...+
T Consensus 536 ~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA~~~--VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD 613 (1051)
T KOG0168|consen 536 SAREGLLKNQPELLQSFGKDLLPVLVEVYSSSANPD--VRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKD 613 (1051)
T ss_pred chhhhhhhcCHHHHHHHHHHHHHHHHHHHhccCCch--hhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCC
Confidence 111122223345677788899999999998665553 555555555555443333222221110 1111222234456
Q ss_pred chhhHHHHHHHHHHHHHcccCccCchh--hhhHHH
Q 001584 560 SELREYTHGFFSNIAGVLEDGFAQYLP--LVVPLA 592 (1049)
Q Consensus 560 ~~~r~~~~~~l~~l~~~~~~~~~~~l~--~i~~~l 592 (1049)
..+---+++...-+++.+++.|.+++. .++..+
T Consensus 614 ~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v 648 (1051)
T KOG0168|consen 614 LTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAV 648 (1051)
T ss_pred CeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHH
Confidence 666677888888899999999888753 444443
No 113
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.051 Score=62.48 Aligned_cols=95 Identities=18% Similarity=0.227 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhhccCCCcccchhhhHhHHHHHhhc---CCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhc
Q 001584 821 IFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDM---GSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNG 897 (1049)
Q Consensus 821 ~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~---~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~ 897 (1049)
.+.+++.....++.+.+- ..|..|+.++...+..+ .....|.+.+..|.++.++.++++-+-..|+.|+-.++.+.
T Consensus 800 iv~kIl~r~~~~LS~e~l-~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~s 878 (1014)
T KOG4524|consen 800 IVLKILGRGIHLLSHESL-RIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYS 878 (1014)
T ss_pred HHHHHHHHHHHHhcchhH-HHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHh
Confidence 334455555556665443 56888888887654433 33467888999999999999999999999999999999999
Q ss_pred Ccch-hhHHHHHHHhhhhhh
Q 001584 898 GESA-LKYYGDILRGLYPLF 916 (1049)
Q Consensus 898 ~~~~-~~~~~~~l~~L~~~l 916 (1049)
|+-+ +.+...+++.+...+
T Consensus 879 gDFv~sR~l~dvlP~l~~~~ 898 (1014)
T KOG4524|consen 879 GDFVASRFLEDVLPWLKHLC 898 (1014)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 9854 234555555554333
No 114
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.0011 Score=74.15 Aligned_cols=217 Identities=17% Similarity=0.212 Sum_probs=152.6
Q ss_pred ChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHH
Q 001584 262 EPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEF 341 (1049)
Q Consensus 262 ~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~ 341 (1049)
...+|..++..+..+++.....-. -....++...+..+.+.+. -++-.+...+..++..++++++|.+...
T Consensus 740 qvpik~~gL~~l~~l~e~r~~~~~--~~~ekvl~i~ld~Lkdeds-------yvyLnaI~gv~~Lcevy~e~il~dL~e~ 810 (982)
T KOG4653|consen 740 QVPIKGYGLQMLRHLIEKRKKATL--IQGEKVLAIALDTLKDEDS-------YVYLNAIRGVVSLCEVYPEDILPDLSEE 810 (982)
T ss_pred cccchHHHHHHHHHHHHhcchhhh--hhHHHHHHHHHHHhcccCc-------eeeHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 345788888888888764321111 1224466666666665433 6777888888899999999999888886
Q ss_pred HHhhhcCC--ChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhh
Q 001584 342 ASVSCQNA--SPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYES 419 (1049)
Q Consensus 342 l~~~l~~~--~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 419 (1049)
..+.-+.. +...|.+ .+++.++...++....+.+.++..++.+.+||+.+.|.+++..+|.++....-...+.+.+
T Consensus 811 Y~s~k~k~~~d~~lkVG--Eai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e 888 (982)
T KOG4653|consen 811 YLSEKKKLQTDYRLKVG--EAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE 888 (982)
T ss_pred HHhcccCCCccceehHH--HHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH
Confidence 54433322 3444444 7788888888888888888999999999999999999999999999998876555667777
Q ss_pred HHHHHHHhcc-CCChHHHHHHHHHHHHHHHhhccccccch----HHHHHHHHHhhcC-CCHhHHHHHHHHHHHHHH
Q 001584 420 VLPCILNALE-DESDEVKEKSYYALAAFCEDMGEEILPFL----DPLMGKLLAALEN-SPRNLQETCMSAIGSVAA 489 (1049)
Q Consensus 420 ll~~l~~~l~-~~~~~v~~~a~~~l~~l~~~~~~~l~~~~----~~ll~~l~~~l~~-~~~~v~~~~~~~l~~l~~ 489 (1049)
++..++...+ |.+.-||.+|+..+..+....+..+.|++ -+....+.+.... ++..++..+..|+-.+-.
T Consensus 889 v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a 964 (982)
T KOG4653|consen 889 VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQA 964 (982)
T ss_pred HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 7777766554 55688999999999999999888777744 3444444444333 445566666555554433
No 115
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.00026 Score=78.84 Aligned_cols=204 Identities=18% Similarity=0.183 Sum_probs=151.1
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccch
Q 001584 379 VLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL 458 (1049)
Q Consensus 379 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~ 458 (1049)
-++..+..+.||.+.+|..+...+..+.+...+.-...-..++...+..+.|.++-|--.|...+..+++.+++.+ +
T Consensus 728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~i---l 804 (982)
T KOG4653|consen 728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDI---L 804 (982)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhh---H
Confidence 3666677788999999999999999999854433333445789999999999999999999999999999877643 3
Q ss_pred HHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchh
Q 001584 459 DPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRA 538 (1049)
Q Consensus 459 ~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~ 538 (1049)
+.+.+...+.-+....+.+-.+-+++..++...|+.+..|+..+...+...+. +++...|..++..+|.+++....
T Consensus 805 ~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvr---epd~~~RaSS~a~lg~Lcq~~a~- 880 (982)
T KOG4653|consen 805 PDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVR---EPDHEFRASSLANLGQLCQLLAF- 880 (982)
T ss_pred HHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcC---CchHHHHHhHHHHHHHHHHHHhh-
Confidence 33444333333333356677777999999999999999999977777666654 45667788888899988876542
Q ss_pred ccccchHHHHHHHHhccC-CCCchhhHHHHHHHHHHHHHcccCccCchhhhh
Q 001584 539 RMEPILPPFVEAAISGFG-LEFSELREYTHGFFSNIAGVLEDGFAQYLPLVV 589 (1049)
Q Consensus 539 ~~~~~~~~i~~~l~~~l~-~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i~ 589 (1049)
.....+.+++..++.... ++...+|++|...+..+..+.|.+..|++....
T Consensus 881 ~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l 932 (982)
T KOG4653|consen 881 QVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLL 932 (982)
T ss_pred hhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHH
Confidence 223355555555555433 567789999999999999999988888665443
No 116
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.01 E-value=0.00035 Score=69.94 Aligned_cols=193 Identities=13% Similarity=0.140 Sum_probs=121.1
Q ss_pred HHHHHHHhhhc-CCChhHHhHHHHHHHHHhhcCh--HHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcH--
Q 001584 337 PVFEFASVSCQ-NASPKYREAAVTAIGIISEGCA--EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP-- 411 (1049)
Q Consensus 337 ~ll~~l~~~l~-~~~~~~r~~al~~l~~i~~~~~--~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-- 411 (1049)
.-++.+...++ +.++..++.++.+++..+.... +.+... ..++.+...+.+|++.+|..|++++..++.....
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~--Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDL--GGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHc--CCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence 33455555555 4689999999999999766432 222222 4688999999999999999999999999876532
Q ss_pred HHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHh
Q 001584 412 EIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAA 491 (1049)
Q Consensus 412 ~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~ 491 (1049)
.++.|+..++..+... .-+..+|.+++.+|.++.-. +.....+..-++.++.++..++..+|.+++.++..++...
T Consensus 90 ~Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv~--~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 90 QIKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLTVT--NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccCCC--cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 2344444444444332 22568999999999988522 1112223344556667788889999999999999887542
Q ss_pred hhhccccH-HHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchh
Q 001584 492 EQAFIPYA-ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRA 538 (1049)
Q Consensus 492 ~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~ 538 (1049)
.. ....+ .+.++.+..++....+.+. --.++..+..+...++++
T Consensus 166 ~~-~~~Ll~~q~~~~~~~Lf~~~~~~~~--l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 166 DM-TRELLSAQVLSSFLSLFNSSESKEN--LLRVLTFFENINENIKKE 210 (254)
T ss_pred HH-HHHHHhccchhHHHHHHccCCccHH--HHHHHHHHHHHHHhhCcc
Confidence 11 01111 2234444555544333332 224566777776666543
No 117
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.014 Score=65.58 Aligned_cols=440 Identities=13% Similarity=0.110 Sum_probs=220.7
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHh--cC-------C--CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhccCC
Q 001584 4 SLELLLIQFLMP-DNDARRQAEDQIKRLA--KD-------P--QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKL 71 (1049)
Q Consensus 4 ~l~~ll~~~~s~-d~~~r~~a~~~L~~~~--~~-------p--~~~~~l~~il~~~~~~~~R~~a~~~l~~~i~~~w~~~ 71 (1049)
.+.++|++++.. |+-.+-+|-.+|=++. .| | .+++.|..++....+..+.-.|+..|.......-...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 467899999876 8888888888775543 12 2 3578899999877789999999888877654433322
Q ss_pred CHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCC----CCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhh
Q 001584 72 SPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVP----AGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTE 147 (1049)
Q Consensus 72 ~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~----~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~ 147 (1049)
..-........|++.|..-.-..|-.+.-+++..|.+.... -+....++.++ .++ ....+..|+-+...+|.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~Lsyl-DFF---Si~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYL-DFF---SIHAQRVALAIAANCCK 323 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHH-HHH---HHHHHHHHHHHHHHHHh
Confidence 11111223334555554323455677777788777764311 12222222221 112 23556677777788887
Q ss_pred hhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhh-HHHHHHHHHHhhcCC----HHH
Q 001584 148 TIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFI-PSILNVSRQCLASGE----EDV 222 (1049)
Q Consensus 148 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~ll~~l~~~l~~~~----~~~ 222 (1049)
.+...--.++-+.+|++.+.|+. .+.++-..++-|+.++++..... ...++.+. +.+++-+.+++.-.. ...
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~-~D~k~ies~~ic~~ri~d~f~h~--~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~ 400 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSY-QDKKPIESVCICLTRIADGFQHG--PDKLDQLCSHDLITNIQQLLSVTPTILSNGT 400 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHhcccC--hHHHHHHhchhHHHHHHHHHhcCcccccccc
Confidence 77655446678889999999998 77888888888998887655322 11222221 334444444443221 123
Q ss_pred HHHHHHHHHHHhccCCcchhhhHH-HHHHHHHHhhhCCCC------ChH-HH--HHHHHHHHHHHhhhHhhhhh------
Q 001584 223 AVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNL------EPN-TR--HQAIQIISWLAKYKYNSLKK------ 286 (1049)
Q Consensus 223 ~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~~~~~~~------~~~-~r--~~a~~~l~~l~~~~~~~~~~------ 286 (1049)
....+..+..+....|-.+...+. ++...+..++...+. .+. .| ....+...-+++.-|..-..
T Consensus 401 ~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~ 480 (1051)
T KOG0168|consen 401 YTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVD 480 (1051)
T ss_pred hhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehh
Confidence 445555555555555544433322 233322222221111 011 01 01111111111111100000
Q ss_pred cCChHHHHHHHhhhhccCCCCCCCCCCcHHHHH-HHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHh
Q 001584 287 HKLVIPILQVMCPLLAESNEAGEDDDLAPDRAA-AEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIIS 365 (1049)
Q Consensus 287 ~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a-~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~ 365 (1049)
..+..++++..-..+-.|.+ +-..|..+..+ ...+..+-..-| ..-...+.-...+=..+.
T Consensus 481 ~~~~~~~~n~~~~~~~~~~d--~~~s~~~~~~~~~ri~~q~~~~~~----------------t~~~~~dkl~~~~r~~~l 542 (1051)
T KOG0168|consen 481 CSLIYEIVNLADELLWQWRD--DRGSWHTYTNIDSRIIEQINEDTG----------------TSRKQQDKLNGSAREGLL 542 (1051)
T ss_pred hhhhcccccccccccccCcc--ccccccccchhhhhhhhhhccCcc----------------cchhhhhhcCCchhhhhh
Confidence 00000111111011111111 11223222211 111111110000 000001111111111223
Q ss_pred hcChHHHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcHHH-Hhhh-h-hHHHHHHHhccCCChHHHHHHHH
Q 001584 366 EGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEI-VSHY-E-SVLPCILNALEDESDEVKEKSYY 441 (1049)
Q Consensus 366 ~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~-~-~ll~~l~~~l~~~~~~v~~~a~~ 441 (1049)
..-++.+..+...++|.+++... .-++.||..++.+|.++......+. ...+ + .+-..+...+...+.+|-..|++
T Consensus 543 ~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQ 622 (1051)
T KOG0168|consen 543 KNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQ 622 (1051)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHH
Confidence 44566777788899999999887 4689999999999999987665432 2211 1 12222233344555666667777
Q ss_pred HHHHHHHhhccccccchH--HHHHHHHHh
Q 001584 442 ALAAFCEDMGEEILPFLD--PLMGKLLAA 468 (1049)
Q Consensus 442 ~l~~l~~~~~~~l~~~~~--~ll~~l~~~ 468 (1049)
...-+++.+++.+.+++. .++..+.++
T Consensus 623 vAEiLmeKlpd~F~~~F~REGV~~~v~~L 651 (1051)
T KOG0168|consen 623 VAEILMEKLPDTFSPSFRREGVFHAVKQL 651 (1051)
T ss_pred HHHHHHHHhHHHhhhhHhhhhHHHHHHHH
Confidence 777777777776665543 344444333
No 118
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.99 E-value=0.0057 Score=70.35 Aligned_cols=367 Identities=16% Similarity=0.192 Sum_probs=205.0
Q ss_pred CCHHHHHHHHHHHHHHHhccCCC--CCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhh
Q 001584 91 HSAPVRRASANVVSIIAKYAVPA--GEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCL 168 (1049)
Q Consensus 91 ~~~~vr~~~~~~l~~i~~~~~~~--~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l 168 (1049)
++..+| .+..++..++...-.+ -.-.++++.|..++.+++.+....++.++..+.-.....-.-.-..+++.+.+.+
T Consensus 262 QeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl 340 (708)
T PF05804_consen 262 QEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLL 340 (708)
T ss_pred HHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHh
Confidence 444444 5556677776532110 0125678889999998888888888888888753221100001224677788888
Q ss_pred CCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCC--cch--hhh
Q 001584 169 QDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA--PLL--GDS 244 (1049)
Q Consensus 169 ~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~--~~~--~~~ 244 (1049)
.+ ++..++..++++|.++.....-..... -.+++|.++..+ .+ +..+..++.+|..+..... ..| ...
T Consensus 341 ~s-~~~~l~~~aLrlL~NLSfd~~~R~~mV-~~GlIPkLv~LL----~d--~~~~~val~iLy~LS~dd~~r~~f~~Tdc 412 (708)
T PF05804_consen 341 PS-ENEDLVNVALRLLFNLSFDPELRSQMV-SLGLIPKLVELL----KD--PNFREVALKILYNLSMDDEARSMFAYTDC 412 (708)
T ss_pred cC-CCHHHHHHHHHHHHHhCcCHHHHHHHH-HCCCcHHHHHHh----CC--CchHHHHHHHHHHhccCHhhHHHHhhcch
Confidence 87 788899999999988865432111111 146788888764 32 3344556777776654321 112 123
Q ss_pred HHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhh--hhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHH
Q 001584 245 VKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS--LKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEV 322 (1049)
Q Consensus 245 ~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~ 322 (1049)
++.+++.++. ++ ++.+...++.++..++...... +-..+ .++.++....... .......
T Consensus 413 Ip~L~~~Ll~---~~--~~~v~~eliaL~iNLa~~~rnaqlm~~g~----gL~~L~~ra~~~~----------D~lLlKl 473 (708)
T PF05804_consen 413 IPQLMQMLLE---NS--EEEVQLELIALLINLALNKRNAQLMCEGN----GLQSLMKRALKTR----------DPLLLKL 473 (708)
T ss_pred HHHHHHHHHh---CC--CccccHHHHHHHHHHhcCHHHHHHHHhcC----cHHHHHHHHHhcc----------cHHHHHH
Confidence 4444444332 22 3334444455555555432211 11112 2333333333222 1224467
Q ss_pred HHHHHHHcc--hhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcC-hH-HHHHhHH--HHHHHHHhhcCC--CChhH
Q 001584 323 IDTMALNLA--KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC-AE-WMKEKLE--SVLHIVLGALRD--PEQFV 394 (1049)
Q Consensus 323 l~~l~~~~~--~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~-~~-~~~~~l~--~i~~~l~~~l~d--~~~~v 394 (1049)
+..++.+-| +..+...+..+...+.+.+ .-...+.++|.++.-. ++ .....+. .++|.+...|.. .++.+
T Consensus 474 IRNiS~h~~~~k~~f~~~i~~L~~~v~~~~--~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl 551 (708)
T PF05804_consen 474 IRNISQHDGPLKELFVDFIGDLAKIVSSGD--SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDL 551 (708)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhhcCC--cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHH
Confidence 777777664 3334334444334454443 3356666777776532 11 1122221 467777776653 23457
Q ss_pred HHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhccCC--ChHHHHHHHHHHHHHHHhhc--cccccchHHHHHHHHHh
Q 001584 395 RGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDE--SDEVKEKSYYALAAFCEDMG--EEILPFLDPLMGKLLAA 468 (1049)
Q Consensus 395 r~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~~--~~~v~~~a~~~l~~l~~~~~--~~l~~~~~~ll~~l~~~ 468 (1049)
...++..+|.++.. +.....+ ..+++.++..++.. +.+.-...+.++..++..-. +.+.. -.++...++.+
T Consensus 552 ~LE~Vi~~gtla~d--~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~-~~~~~~ylidL 628 (708)
T PF05804_consen 552 LLEVVILLGTLASD--PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLK-ETEIPAYLIDL 628 (708)
T ss_pred HHHHHHHHHHHHCC--HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHh-ccchHHHHHHH
Confidence 77778888888765 3333333 46778887777654 34555566777777765421 11111 13577888999
Q ss_pred hcCCCHhHHHHHHHHHHHHHHH
Q 001584 469 LENSPRNLQETCMSAIGSVAAA 490 (1049)
Q Consensus 469 l~~~~~~v~~~~~~~l~~l~~~ 490 (1049)
+.+.+..+|..+-.++..+++.
T Consensus 629 ~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 629 MHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred hcCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999988888877764
No 119
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.062 Score=60.24 Aligned_cols=103 Identities=12% Similarity=0.115 Sum_probs=62.1
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhh
Q 001584 69 AKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTET 148 (1049)
Q Consensus 69 ~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~ 148 (1049)
..+......++-=.+.+++.+ .+...|+..=.++..+..... .---....+..-....++..|..|++.|.++...
T Consensus 55 e~~~~~eate~ff~~tKlfQs-kd~~LRr~vYl~Ikels~ise---dviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~ 130 (865)
T KOG1078|consen 55 EHFGETEATELFFAITKLFQS-KDVSLRRMVYLAIKELSKISE---DVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDG 130 (865)
T ss_pred cccchhhHHHHHHHHHHHHhh-cCHHHHHHHHHHHhhccccch---hhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCc
Confidence 445555555555556666776 889999888777777664321 1112334444445566677888888888877642
Q ss_pred hhhcccccHHHHHHHHHHhhCCCCChHHHHHHHH
Q 001584 149 IGQTFRPHFADMQALLLKCLQDETSNRVRIAALK 182 (1049)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~ 182 (1049)
.....+-..+.+++-+ .++.++.+|+-
T Consensus 131 ------~m~~~iery~kqaivd-~~~avSsaalv 157 (865)
T KOG1078|consen 131 ------TMLQAIERYMKQAIVD-KNPAVSSAALV 157 (865)
T ss_pred ------chhHHHHHHHHhHeec-cccccchHHHH
Confidence 2233444555666677 67767666553
No 120
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.012 Score=61.95 Aligned_cols=269 Identities=16% Similarity=0.103 Sum_probs=150.3
Q ss_pred ccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhh-cCCHHHHHHHHHHHHHH
Q 001584 155 PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLA-SGEEDVAVIAFEIFDEL 233 (1049)
Q Consensus 155 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~-~~~~~~~~~~~~~l~~l 233 (1049)
+....++..+.+-..| ++..+|..|+.+|++.+...+++ ...+.+.++..+...+- +.+.++...++.+|..+
T Consensus 254 ~lL~s~~~~la~ka~d-p~a~~r~~a~r~L~~~as~~P~k-----v~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v 327 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATD-PSAKSRGMACRGLGNTASGAPDK-----VRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMV 327 (533)
T ss_pred ccHHHHHHHHHHhccC-chhHHHHHHHHHHHHHhccCcHH-----HHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3455666667677777 88899999999999999986543 34555666766655554 45678888888888877
Q ss_pred hccCC-cchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCC
Q 001584 234 IESPA-PLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDD 312 (1049)
Q Consensus 234 ~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~ 312 (1049)
.+... .-+.+++.++.-.+-+...+. +++.|..++-+++.+....+...+. .|.+++...+.+++.+..+
T Consensus 328 ~~~~~~~~l~~~~l~ialrlR~l~~se--~~~~R~aa~~Lfg~L~~l~g~~~e~-~Fte~v~k~~~~lllhl~d------ 398 (533)
T KOG2032|consen 328 LEKASNDDLESYLLNIALRLRTLFDSE--DDKMRAAAFVLFGALAKLAGGGWEE-FFTEQVKKRLAPLLLHLQD------ 398 (533)
T ss_pred HHhhhhcchhhhchhHHHHHHHHHHhc--ChhhhhhHHHHHHHHHHHcCCCchh-hhHHHHHhccccceeeeCC------
Confidence 66432 222333333333333333333 7889999999999998776554332 3556666566666554432
Q ss_pred CcHHH-HHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHH----Hhhc
Q 001584 313 LAPDR-AAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIV----LGAL 387 (1049)
Q Consensus 313 ~~~~~-~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l----~~~l 387 (1049)
.++.. .|..... -...+.-....+-....+.+ +.+- .|..+++ ...-..+..+.++++-.+ .-.+
T Consensus 399 ~~p~va~ACr~~~--~~c~p~l~rke~~~~~q~~l-d~~~-~~~q~Fy------n~~c~~L~~i~~d~l~~~~t~~~~~f 468 (533)
T KOG2032|consen 399 PNPYVARACRSEL--RTCYPNLVRKELYHLFQESL-DTDM-ARFQAFY------NQWCIQLNHIHPDILMLLLTEDQHIF 468 (533)
T ss_pred CChHHHHHHHHHH--HhcCchhHHHHHHHHHhhhh-HHhH-HHHHHHH------HHHHHHHhhhCHHHHHHHHHhchhhe
Confidence 13321 1222211 11111111222222222222 1111 0211111 100001122222332222 2334
Q ss_pred CCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 001584 388 RDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDESDEVKEKSYYALAAFCE 448 (1049)
Q Consensus 388 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~ 448 (1049)
+..-+.||.++..--+.+.....+....+. ..+...+-....++-++++..+..|++.+..
T Consensus 469 ~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 469 SSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred ecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 455568888888777777666655443332 4566666677789999999999999987654
No 121
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=97.93 E-value=0.00053 Score=61.52 Aligned_cols=154 Identities=18% Similarity=0.312 Sum_probs=110.0
Q ss_pred HHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHhcc--CCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhh-hhhhhcc
Q 001584 78 LVKQSLIESITLEHS-APVRRASANVVSIIAKYA--VPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLT-ETIGQTF 153 (1049)
Q Consensus 78 ~i~~~ll~~l~~e~~-~~vr~~~~~~l~~i~~~~--~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~-~~~~~~~ 153 (1049)
.||+.|+.+|..+.. ...-+.++.+++.++... .+++.|+++...+..... .++ ..|+.+|..+. ...++.+
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~-~e~---~kA~~IF~~L~~~l~~efl 78 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSE-NEP---VKAFHIFICLPMPLYGEFL 78 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhc-cch---HHHHHHHHhCCchhhhhHH
Confidence 578899999986433 345566777777766532 467899999988887552 233 56888898888 6677777
Q ss_pred cccHHHHHHHHHHhhCCCCChHH--HHHHH-HHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCH-HHHHHHHHH
Q 001584 154 RPHFADMQALLLKCLQDETSNRV--RIAAL-KAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEE-DVAVIAFEI 229 (1049)
Q Consensus 154 ~~~~~~l~~~l~~~l~~~~~~~v--r~~a~-~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~-~~~~~~~~~ 229 (1049)
.+++..+.+.+.+.|.++.+.++ ...|+ .+++..+...+.+.....+++++|.++..+...+..+.+ .....+++-
T Consensus 79 ~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~ 158 (174)
T PF04510_consen 79 IPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLRD 158 (174)
T ss_pred HHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 88999999999999988433333 34554 344555666655444566889999999999998887776 667777776
Q ss_pred HHHHhc
Q 001584 230 FDELIE 235 (1049)
Q Consensus 230 l~~l~~ 235 (1049)
+..++.
T Consensus 159 ~e~~v~ 164 (174)
T PF04510_consen 159 FESFVS 164 (174)
T ss_pred HHHHHH
Confidence 665544
No 122
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=97.92 E-value=6.4e-05 Score=70.16 Aligned_cols=128 Identities=30% Similarity=0.424 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhh----------------ccccc
Q 001584 93 APVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ----------------TFRPH 156 (1049)
Q Consensus 93 ~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~----------------~~~~~ 156 (1049)
+.||++++.+++.++.+++|+ .||++++.+.+.+++ ++.....++.+|..+.+.+.+ .+...
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~-~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQ-QWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT-TSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChh-hCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 678999999999999999995 999999999999887 567778899999999887653 12334
Q ss_pred HHHHHHHHHHhhCCCCC---hHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 001584 157 FADMQALLLKCLQDETS---NRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIF 230 (1049)
Q Consensus 157 ~~~l~~~l~~~l~~~~~---~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l 230 (1049)
.+.++..+.+.+....+ ..+...+++++.+++.+.+... ... .+ +++.+.+.+.+ ++.+..|++||
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~-i~~-~~----~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIEL-IIN-SN----LLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHH-HHS-SS----HHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHH-hcc-HH----HHHHHHHHcCC--HHHHHHHHHhC
Confidence 56677888887775222 7889999999999999875221 111 22 44444445533 34566676664
No 123
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.92 E-value=0.033 Score=61.13 Aligned_cols=141 Identities=15% Similarity=0.179 Sum_probs=104.1
Q ss_pred CChhHHhHHHHHHHHHhhcChHHH-HHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHHHH
Q 001584 349 ASPKYREAAVTAIGIISEGCAEWM-KEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILN 426 (1049)
Q Consensus 349 ~~~~~r~~al~~l~~i~~~~~~~~-~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~ 426 (1049)
.+...+.||+.++..++......- ...-..+...+++.+.||+..|..++..++..+.-.+++--..++ ...+..+.+
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 456678888888877655321100 012346778888888999999999999999999887765322332 467888899
Q ss_pred hccCCChHHHHHHHHHHHHHHHhhccc--cccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHH
Q 001584 427 ALEDESDEVKEKSYYALAAFCEDMGEE--ILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (1049)
Q Consensus 427 ~l~~~~~~v~~~a~~~l~~l~~~~~~~--l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~ 489 (1049)
.+.++.+.+|..+.++|..+.=++.+. ..++-.--...+....+++++.|+++++..+..+.-
T Consensus 469 ~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 469 MLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 999999999999999999988776543 334544555666777888999999999998887653
No 124
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.077 Score=59.52 Aligned_cols=290 Identities=17% Similarity=0.160 Sum_probs=170.2
Q ss_pred ccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 001584 155 PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELI 234 (1049)
Q Consensus 155 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~ 234 (1049)
.....+.+++..++.+ ....|-..|.+++..+..... +.+-| .+..++.++.+.....|..+.+.|.+++
T Consensus 241 ~~~s~~~~fl~s~l~~-K~emV~~EaArai~~l~~~~~--------r~l~p-avs~Lq~flssp~~~lRfaAvRtLnkvA 310 (865)
T KOG1078|consen 241 QADSPLFPFLESCLRH-KSEMVIYEAARAIVSLPNTNS--------RELAP-AVSVLQLFLSSPKVALRFAAVRTLNKVA 310 (865)
T ss_pred cchhhHHHHHHHHHhc-hhHHHHHHHHHHHhhccccCH--------hhcch-HHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3345577888888887 788888888888877766552 22223 6667777777788888999999999999
Q ss_pred ccCCcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCc
Q 001584 235 ESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLA 314 (1049)
Q Consensus 235 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~ 314 (1049)
..+|......-.++=.+. .+.-|..|.-.+.++.+..... -+..+...+-..+.+.++ +
T Consensus 311 m~~P~~v~~cN~elE~lI---------td~NrsIat~AITtLLKTG~e~-----sv~rLm~qI~~fv~disD-------e 369 (865)
T KOG1078|consen 311 MKHPQAVTVCNLDLESLI---------TDSNRSIATLAITTLLKTGTES-----SVDRLMKQISSFVSDISD-------E 369 (865)
T ss_pred HhCCccccccchhHHhhh---------cccccchhHHHHHHHHHhcchh-----HHHHHHHHHHHHHHhccc-------c
Confidence 888875543333332211 2223444444444444322111 112233334444444433 2
Q ss_pred HHHHHHHHHHHHHHHcchhchHHHHHHHHhhhc-CCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChh
Q 001584 315 PDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQ-NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQF 393 (1049)
Q Consensus 315 ~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~-~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~ 393 (1049)
......+++..++..++. ....++.++.+.+. +.....+.+.+.++..+.+..++.-..-+..+...+..+-
T Consensus 370 FKivvvdai~sLc~~fp~-k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce------ 442 (865)
T KOG1078|consen 370 FKIVVVDAIRSLCLKFPR-KHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCE------ 442 (865)
T ss_pred ceEEeHHHHHHHHhhccH-HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhcc------
Confidence 233445566677777762 12234555555554 3456777888888888887655443334445555544332
Q ss_pred HHHHHHHHHHHhHhhhcHHH--HhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcC
Q 001584 394 VRGAASFALGQFAEYLQPEI--VSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN 471 (1049)
Q Consensus 394 vr~~a~~~l~~l~~~~~~~~--~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~ 471 (1049)
.+..+...|..+....+... ..|.. .+.+..-=.+..||.+|..+|..|.... +. ..+.+...+..++.+
T Consensus 443 ~~~i~~rILhlLG~EgP~a~~Pskyir----~iyNRviLEn~ivRaaAv~alaKfg~~~-~~---l~~sI~vllkRc~~D 514 (865)
T KOG1078|consen 443 FTQIAVRILHLLGKEGPKAPNPSKYIR----FIYNRVILENAIVRAAAVSALAKFGAQD-VV---LLPSILVLLKRCLND 514 (865)
T ss_pred chHHHHHHHHHHhccCCCCCCcchhhH----HHhhhhhhhhhhhHHHHHHHHHHHhcCC-CC---ccccHHHHHHHHhcC
Confidence 23355566666665553211 12322 2233333345689999999999998222 12 234566677788889
Q ss_pred CCHhHHHHHHHHHHHHHHH
Q 001584 472 SPRNLQETCMSAIGSVAAA 490 (1049)
Q Consensus 472 ~~~~v~~~~~~~l~~l~~~ 490 (1049)
.+..+|..|--.+..+-..
T Consensus 515 ~DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 515 SDDEVRDRATFYLKNLEEK 533 (865)
T ss_pred chHHHHHHHHHHHHHhhhh
Confidence 9999999988877766533
No 125
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.88 E-value=0.00044 Score=66.08 Aligned_cols=146 Identities=19% Similarity=0.250 Sum_probs=102.5
Q ss_pred ccchhhhHhHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcchhhHH-HHHHHhhhhhhCC
Q 001584 840 QDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYY-GDILRGLYPLFGD 918 (1049)
Q Consensus 840 ~~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~-~~~l~~L~~~l~~ 918 (1049)
.+|..++.++||++...+.- ++..+|.+..+|.|+++.||.+|+.++..++..+--.+.+.+ ..++..+
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~----ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l------ 72 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNL----VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLL------ 72 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHH----HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHH------
Confidence 57999999999999876544 455678888899999999999999999999987654444433 4444443
Q ss_pred CCCChhHHhhHHHHHHHHHHh-CCCCCChhhHHHHHHhhCCC--------CCcHHhhHHHHHHHHHHHhhCChhhcchhh
Q 001584 919 SEPDDAVRDNAAGAVARMIMV-NPQSIPLNQVLPVLLKVLPL--------KEDFEESMAVYNCISTLVLSSNPQILSLVP 989 (1049)
Q Consensus 919 ~~~~~~~~~~a~~~l~~i~~~-~~~~~~~~~~l~~~l~~lp~--------~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~ 989 (1049)
.++++.+++.|..++..+... +|+. +.+.+|..+..+.. ..+.++...+++++...+.. +.+-..-+.
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~~~~~~--i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-d~~~~~l~~ 149 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKKRNPNI--IYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-DKQKESLVE 149 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc-HHHHHHHHH
Confidence 467899999999999999887 5554 45666666666543 24556677788888887753 222233444
Q ss_pred HHHHHHHHH
Q 001584 990 ELVNLFAEV 998 (1049)
Q Consensus 990 ~i~~~~~~~ 998 (1049)
++++-+...
T Consensus 150 kl~~~~~~~ 158 (178)
T PF12717_consen 150 KLCQRFLNA 158 (178)
T ss_pred HHHHHHHHH
Confidence 555544333
No 126
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.013 Score=63.90 Aligned_cols=210 Identities=17% Similarity=0.213 Sum_probs=135.5
Q ss_pred HHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc
Q 001584 252 SLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA 331 (1049)
Q Consensus 252 l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~ 331 (1049)
+..++++. +..+|.+|++.+..+.+.. ++-..+.+.....|.+.++ .+|.+|.+.+-..++..+
T Consensus 203 l~~~~~~~--D~~Vrt~A~eglL~L~eg~-------kL~~~~Y~~A~~~lsD~~e-------~VR~aAvqlv~v~gn~~p 266 (823)
T KOG2259|consen 203 LIYLEHDQ--DFRVRTHAVEGLLALSEGF-------KLSKACYSRAVKHLSDDYE-------DVRKAAVQLVSVWGNRCP 266 (823)
T ss_pred HHHHhcCC--CcchHHHHHHHHHhhcccc-------cccHHHHHHHHHHhcchHH-------HHHHHHHHHHHHHHhcCC
Confidence 33444444 7889999999988887521 1223345555556655443 788888888888777662
Q ss_pred ---------hhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHH-HHH---------------------
Q 001584 332 ---------KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLE-SVL--------------------- 380 (1049)
Q Consensus 332 ---------~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~-~i~--------------------- 380 (1049)
.......+..+...+.+..|.+|.-|..+||.+-....+.+..-++ +++
T Consensus 267 ~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~Ge 346 (823)
T KOG2259|consen 267 APLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGE 346 (823)
T ss_pred CcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCC
Confidence 2344567777777888889999988888887765433332222111 111
Q ss_pred -----------------------------HHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCC
Q 001584 381 -----------------------------HIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE 431 (1049)
Q Consensus 381 -----------------------------~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~ 431 (1049)
..++.++.|+-..||.+|...++.++..-+. +-..-+..|+..++|.
T Consensus 347 wSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMfNDE 422 (823)
T KOG2259|consen 347 WSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG----FAVRALDFLVDMFNDE 422 (823)
T ss_pred cccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHhccH
Confidence 2344455666677888888888888776432 2233566677777888
Q ss_pred ChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHH
Q 001584 432 SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGS 486 (1049)
Q Consensus 432 ~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~ 486 (1049)
...||..|..+|..+..... .=++.++.+...+.+...++|+.+-+.+..
T Consensus 423 ~~~VRL~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVHLA-----IREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHHHHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 78888888888888776631 223455566666777788888877766653
No 127
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.82 E-value=0.0043 Score=64.81 Aligned_cols=188 Identities=20% Similarity=0.187 Sum_probs=132.8
Q ss_pred hcCCChhHHhHHHHHHHHHhhc--ChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhc--HHHHhhhhhHH
Q 001584 346 CQNASPKYREAAVTAIGIISEG--CAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ--PEIVSHYESVL 421 (1049)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~--~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~ll 421 (1049)
+.+...+.|.+++..+..+... .++.+......+++.+.++++-+...=+..|+.+++-++-.++ ......+..+.
T Consensus 52 l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~ 131 (309)
T PF05004_consen 52 LTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELK 131 (309)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Confidence 4455688999999998777653 5677777788999999999987766667788899998888865 55567788899
Q ss_pred HHHHHhccCCC--hHHHHHHHHHHHHHHHhhccccccch--HHHHHHHHHh--hcC----------CCHhHHHHHHHHHH
Q 001584 422 PCILNALEDES--DEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAA--LEN----------SPRNLQETCMSAIG 485 (1049)
Q Consensus 422 ~~l~~~l~~~~--~~v~~~a~~~l~~l~~~~~~~l~~~~--~~ll~~l~~~--l~~----------~~~~v~~~~~~~l~ 485 (1049)
|.|.+.+.|.. ..+|.+++.+|+-.+-..+.....+. -..+..++.. .+. +++.+...|+.+|+
T Consensus 132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~ 211 (309)
T PF05004_consen 132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWA 211 (309)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHH
Confidence 99988888764 45677788788766544433222111 1333322221 111 13569999999999
Q ss_pred HHHHHhhh-hccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhc
Q 001584 486 SVAAAAEQ-AFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVG 536 (1049)
Q Consensus 486 ~l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~ 536 (1049)
.+...++. .+..+....+|.+...+... +..+|..|-+++..+.....
T Consensus 212 lLlt~~~~~~~~~~~~~~~~~l~~lL~s~---d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 212 LLLTTLPDSKLEDLLEEALPALSELLDSD---DVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHhh
Confidence 99988775 45566777888888888643 55688888899888765543
No 128
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=97.81 E-value=0.11 Score=58.55 Aligned_cols=295 Identities=15% Similarity=0.135 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCC-CHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCC-
Q 001584 94 PVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE-QEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDE- 171 (1049)
Q Consensus 94 ~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~-~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~- 171 (1049)
.-|-.++.-++...... +-...+++......++... ..+.|..++..+..+++.-..... ..-..+.+.+.++
T Consensus 5 ~~R~~a~~~l~~~i~~~-~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~----~~R~~fF~~I~~~~ 79 (464)
T PF11864_consen 5 SERIKAAEELCESIQKY-PLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG----LMRAEFFRDISDPS 79 (464)
T ss_pred HHHHHHHHHHHHHHHhC-CchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH----HHHHHHHHHHhcCC
Confidence 34666666666654432 2123344444444445443 467899999999999876543211 1122233333332
Q ss_pred --CChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHh----------h-------------cCCHHHHHHH
Q 001584 172 --TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCL----------A-------------SGEEDVAVIA 226 (1049)
Q Consensus 172 --~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l----------~-------------~~~~~~~~~~ 226 (1049)
++...|..|+.+|.. ...+-.. -..+..|.+...+.... . +.+.......
T Consensus 80 ~~~d~~~~l~aL~~LT~---~Grdi~~--~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~l 154 (464)
T PF11864_consen 80 NDDDFDLRLEALIALTD---NGRDIDF--FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDL 154 (464)
T ss_pred CchhHHHHHHHHHHHHc---CCcCchh--cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHH
Confidence 344566666666643 2221100 01223333333333322 0 0133345677
Q ss_pred HHHHHHHhccCCcchh-hhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCC
Q 001584 227 FEIFDELIESPAPLLG-DSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESN 305 (1049)
Q Consensus 227 ~~~l~~l~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~ 305 (1049)
+..+..+++.....++ ..+..++..++.++......+++ ..++.++..++.+.. ....-+.+++.++.....-.
T Consensus 155 l~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di-~~~L~vldaii~y~~---iP~~sl~~~i~vLCsi~~~~- 229 (464)
T PF11864_consen 155 LQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDI-EACLSVLDAIITYGD---IPSESLSPCIEVLCSIVNSV- 229 (464)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHH-HHHHHHHHHHHHcCc---CChHHHHHHHHHHhhHhccc-
Confidence 8888889988887776 67788888888887766544444 678889888886431 11223445666665553322
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHH-HcchhchHHHHHHHH--hhhcCCChhHHhHHHHHHHHHhhcChHHHHH----hHHH
Q 001584 306 EAGEDDDLAPDRAAAEVIDTMAL-NLAKHVFPPVFEFAS--VSCQNASPKYREAAVTAIGIISEGCAEWMKE----KLES 378 (1049)
Q Consensus 306 ~~~~d~~~~~~~~a~~~l~~l~~-~~~~~~~~~ll~~l~--~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~----~l~~ 378 (1049)
+....+.+++..+.. ..|...+..+...+. ..-...+...-.+|+..++.+.-+.++.-.+ ....
T Consensus 230 --------~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~ 301 (464)
T PF11864_consen 230 --------SLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSS 301 (464)
T ss_pred --------ccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHH
Confidence 334556666666663 334545555555551 1112345666679999998887665221111 1234
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhH-hhhcH
Q 001584 379 VLHIVLGALRDPEQFVRGAASFALGQFA-EYLQP 411 (1049)
Q Consensus 379 i~~~l~~~l~d~~~~vr~~a~~~l~~l~-~~~~~ 411 (1049)
+++.+...++.++++|-......+..+. ..+..
T Consensus 302 vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~ 335 (464)
T PF11864_consen 302 VLPSLLNALKSNSPRVDYEILLLINRLLDGKYGR 335 (464)
T ss_pred HHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhh
Confidence 8899999998888888777777777776 44433
No 129
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.01 Score=58.66 Aligned_cols=295 Identities=15% Similarity=0.169 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhc-cc----ccHHHHHHHHHHhhCC
Q 001584 96 RRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT-FR----PHFADMQALLLKCLQD 170 (1049)
Q Consensus 96 r~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~-~~----~~~~~l~~~l~~~l~~ 170 (1049)
...+..++..+.+...+....|.+.|.+...+..++..++..++..++.+.+.+... +. -.-+.+++++..++..
T Consensus 60 ttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg 139 (524)
T KOG4413|consen 60 TTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG 139 (524)
T ss_pred hhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC
Confidence 334667777777655554567889999999999999899999999999999887621 11 1235688999999998
Q ss_pred CCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHH-------HHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhh
Q 001584 171 ETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPS-------ILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGD 243 (1049)
Q Consensus 171 ~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-------ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 243 (1049)
.+.+|..+|.+.+.++..+... ...++|. +.+.. ..-+.-.+...++.+.++....|.....
T Consensus 140 -eddeVAkAAiesikrialfpaa------leaiFeSellDdlhlrnla----akcndiaRvRVleLIieifSiSpesane 208 (524)
T KOG4413|consen 140 -EDDEVAKAAIESIKRIALFPAA------LEAIFESELLDDLHLRNLA----AKCNDIARVRVLELIIEIFSISPESANE 208 (524)
T ss_pred -CcHHHHHHHHHHHHHHHhcHHH------HHHhcccccCChHHHhHHH----hhhhhHHHHHHHHHHHHHHhcCHHHHhH
Confidence 8899999999999988776421 1111111 11110 1112234566777777777665543322
Q ss_pred hH-HHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCCh--HHHHHHHhhhhccCCCCCCCCCCcHHHH--
Q 001584 244 SV-KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLV--IPILQVMCPLLAESNEAGEDDDLAPDRA-- 318 (1049)
Q Consensus 244 ~~-~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~--~~il~~l~~~l~~~~~~~~d~~~~~~~~-- 318 (1049)
.- ..++..+..-+.. ..|.-++..++++...+++.... ..|+ ..+++.+..++...+.+.-+ ..|..
T Consensus 209 ckkSGLldlLeaElkG-teDtLVianciElvteLaeteHg----reflaQeglIdlicnIIsGadsdPfe---kfralmg 280 (524)
T KOG4413|consen 209 CKKSGLLDLLEAELKG-TEDTLVIANCIELVTELAETEHG----REFLAQEGLIDLICNIISGADSDPFE---KFRALMG 280 (524)
T ss_pred hhhhhHHHHHHHHhcC-CcceeehhhHHHHHHHHHHHhhh----hhhcchhhHHHHHHHHhhCCCCCcHH---HHHHHHH
Confidence 21 1233333322222 12556888999999988764221 1233 24667777777665542100 11110
Q ss_pred HHHHHHHHHHH--cch---hchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcCh-H-HHHHhHHHHHHHHHhhcCCCC
Q 001584 319 AAEVIDTMALN--LAK---HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA-E-WMKEKLESVLHIVLGALRDPE 391 (1049)
Q Consensus 319 a~~~l~~l~~~--~~~---~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~-~-~~~~~l~~i~~~l~~~l~d~~ 391 (1049)
....++..+-. .++ +.++..+....+.+...|+....+|+.++|.+..+.. . .+...-+.-...++...-|.+
T Consensus 281 fgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqn 360 (524)
T KOG4413|consen 281 FGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQN 360 (524)
T ss_pred HHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhccc
Confidence 11111111100 011 1123334444455667888899999999999987642 1 111111222333333333322
Q ss_pred -hhHHHHHHHHHHHhHhhh
Q 001584 392 -QFVRGAASFALGQFAEYL 409 (1049)
Q Consensus 392 -~~vr~~a~~~l~~l~~~~ 409 (1049)
.--+.+++++|..++...
T Consensus 361 ahakqeaaihaLaaIagel 379 (524)
T KOG4413|consen 361 AHAKQEAAIHALAAIAGEL 379 (524)
T ss_pred ccchHHHHHHHHHHhhccc
Confidence 233567788888776654
No 130
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.76 E-value=0.11 Score=57.26 Aligned_cols=465 Identities=13% Similarity=0.072 Sum_probs=228.2
Q ss_pred CChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhccCC-CCCC--cchHHHH
Q 001584 48 KTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLE-HSAPVRRASANVVSIIAKYAVP-AGEW--PDLLPFL 123 (1049)
Q Consensus 48 ~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e-~~~~vr~~~~~~l~~i~~~~~~-~~~w--~~ll~~l 123 (1049)
.+++.-.-|..-+++.+..+-+......+..-...++..+..| ....+.+..+.+++..+..+-. .+.. ...++.+
T Consensus 21 ~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~L 100 (678)
T KOG1293|consen 21 LDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKL 100 (678)
T ss_pred CCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHH
Confidence 3455444455555555555444333233333333444444432 4456667778888887764321 0111 2357788
Q ss_pred HHhccCCC-HHHHHHHHHHHHHhhhhhhh---cccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHH
Q 001584 124 FQFSQSEQ-EEHREVALILFSSLTETIGQ---TFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVK 199 (1049)
Q Consensus 124 ~~~l~~~~-~~~~~~al~~l~~l~~~~~~---~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 199 (1049)
++++.+++ ..+++..+.++..+.+..+. ....+...+++.+.-....+.....+.-+..+ ... ....++. ...
T Consensus 101 l~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~-a~~-s~~~~hq-~Il 177 (678)
T KOG1293|consen 101 LQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRA-AHL-SSTKDHQ-LIL 177 (678)
T ss_pred HHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhh-ccc-cccchhh-hee
Confidence 99998888 78899999999999987642 23445566776666655521222222222111 111 1111111 111
Q ss_pred HHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHH---HHhccCCcchhhhHHHH-----HH--HHHHhhhCCCCChHHHHHH
Q 001584 200 FREFIPSILNVSRQCLASGEEDVAVIAFEIFD---ELIESPAPLLGDSVKSI-----VH--FSLEVSSSHNLEPNTRHQA 269 (1049)
Q Consensus 200 ~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~---~l~~~~~~~~~~~~~~l-----~~--~l~~~~~~~~~~~~~r~~a 269 (1049)
+..-++.-+..+. ..-+-..+..++.++. .++..++..-...+..+ .+ ....+..++ +.+.|-.+
T Consensus 178 ~Na~i~ekI~~l~---~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~--~~s~~l~s 252 (678)
T KOG1293|consen 178 CNAGILEKINILL---MYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDP--DFSERLRS 252 (678)
T ss_pred ccccchhhHHHHH---HhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCC--CccHHHHH
Confidence 1222233333322 2223456777777777 44444433222111111 11 111233344 45556666
Q ss_pred HHHHHHHHhhhHhh---hhhcCCh----HHHHH-HHhhhhccCCCCCCCCCCcHHH--HHHHHHHH-HHHHcc-----hh
Q 001584 270 IQIISWLAKYKYNS---LKKHKLV----IPILQ-VMCPLLAESNEAGEDDDLAPDR--AAAEVIDT-MALNLA-----KH 333 (1049)
Q Consensus 270 ~~~l~~l~~~~~~~---~~~~~~~----~~il~-~l~~~l~~~~~~~~d~~~~~~~--~a~~~l~~-l~~~~~-----~~ 333 (1049)
++++..+.....+. .+..-+. ..+.+ ....++.++. |+... +..-|+.. +.+.+. ..
T Consensus 253 l~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~-------~s~l~~~~~l~c~~a~~~sklq~~~~e~~ 325 (678)
T KOG1293|consen 253 LECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPG-------LSTLDHTNVLFCILARFASKLQLPQHEEA 325 (678)
T ss_pred HHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCc-------eeehhhhhhhHHHHHHHHHhhhhHHhhhh
Confidence 66666554332100 0000000 01111 1111121111 11111 11122221 333222 22
Q ss_pred chHHHHHHHHh--hhcCCChhHHhHHHHHH---HHHhhcChHHHHHhHH--HHHHHHHhhcCCCChhHHHHHHHHHHHhH
Q 001584 334 VFPPVFEFASV--SCQNASPKYREAAVTAI---GIISEGCAEWMKEKLE--SVLHIVLGALRDPEQFVRGAASFALGQFA 406 (1049)
Q Consensus 334 ~~~~ll~~l~~--~l~~~~~~~r~~al~~l---~~i~~~~~~~~~~~l~--~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 406 (1049)
..+.....+.. -++....+.|.-++.-. ...+.+.....++++. .....+.......+..++.+|+.++-.++
T Consensus 326 ~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~s 405 (678)
T KOG1293|consen 326 TLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFS 405 (678)
T ss_pred hhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHH
Confidence 33333333322 23445566665444322 2222222222223222 12222222233456778889999988887
Q ss_pred hhhcHHHHh--hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchH-HHHHHHHHhhcCCCHhHHHHHHHH
Q 001584 407 EYLQPEIVS--HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLD-PLMGKLLAALENSPRNLQETCMSA 483 (1049)
Q Consensus 407 ~~~~~~~~~--~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~-~ll~~l~~~l~~~~~~v~~~~~~~ 483 (1049)
..... ... .-..+...+++.+.+++..|+..+..++.+++-.+++--..++. ..++.+.+.+.+.+..+|..++++
T Consensus 406 rsV~a-L~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~ 484 (678)
T KOG1293|consen 406 RSVSA-LRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWV 484 (678)
T ss_pred HHHHH-HHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHH
Confidence 76532 221 12457778888889999999999999999999887543222332 566778888888999999999999
Q ss_pred HHHHHHHhhhhc--cccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHH
Q 001584 484 IGSVAAAAEQAF--IPYAERVLELLKIFMVLTNDEDLRSRARATELLGLV 531 (1049)
Q Consensus 484 l~~l~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l 531 (1049)
+..+.-...+.+ .++.+--...+..++ +++++.+.+.++..+..+
T Consensus 485 Lr~l~f~~de~~k~~~~~ki~a~~i~~l~---nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 485 LRHLMFNCDEEEKFQLLAKIPANLILDLI---NDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred HHHHHhcchHHHHHHHHHHhhHHHHHHHH---hCCCHHHHHHHHHHHHHh
Confidence 988766554432 222222333444443 345566665555555443
No 131
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.76 E-value=0.00012 Score=60.88 Aligned_cols=85 Identities=25% Similarity=0.440 Sum_probs=66.3
Q ss_pred HHHHhhh-cCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhh
Q 001584 340 EFASVSC-QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE 418 (1049)
Q Consensus 340 ~~l~~~l-~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 418 (1049)
+.+.+.+ ++++|..|..++.+++.+.. +..++.+...++|+++.||..|+++|+.+.. +
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------~ 61 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD----------PEAIPALIELLKDEDPMVRRAAARALGRIGD----------P 61 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------H
Confidence 4455556 78999999999999984422 2678888888999999999999999998842 2
Q ss_pred hHHHHHHHhccCC-ChHHHHHHHHHHH
Q 001584 419 SVLPCILNALEDE-SDEVKEKSYYALA 444 (1049)
Q Consensus 419 ~ll~~l~~~l~~~-~~~v~~~a~~~l~ 444 (1049)
..++.+.+.+.++ +..||..|..+|+
T Consensus 62 ~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 3778888888765 4667999988874
No 132
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.74 E-value=0.0004 Score=66.34 Aligned_cols=111 Identities=21% Similarity=0.255 Sum_probs=83.9
Q ss_pred ChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcc
Q 001584 350 SPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALE 429 (1049)
Q Consensus 350 ~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~ 429 (1049)
++..|..++.++|-++-..+.. ++..++.+..+|+|+++.||..|+.++..+...-. -..-..++..++..+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~----ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~---ik~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL----VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM---IKVKGQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH----HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc---eeehhhhhHHHHHHHc
Confidence 4678999999999988766544 45568888899999999999999999999876421 2222346677888899
Q ss_pred CCChHHHHHHHHHHHHHHHhh-ccccccchHHHHHHHHH
Q 001584 430 DESDEVKEKSYYALAAFCEDM-GEEILPFLDPLMGKLLA 467 (1049)
Q Consensus 430 ~~~~~v~~~a~~~l~~l~~~~-~~~l~~~~~~ll~~l~~ 467 (1049)
|+++.||..|..++..+.... +..+..++++++..+-.
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 999999999999999998873 44444455555554433
No 133
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.74 E-value=0.015 Score=62.58 Aligned_cols=351 Identities=15% Similarity=0.112 Sum_probs=181.9
Q ss_pred CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhh---ccCCCHH--HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 001584 34 PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGH---WAKLSPQ--LKQLVKQSLIESITLEHSAPVRRASANVVSIIAK 108 (1049)
Q Consensus 34 p~~~~~l~~il~~~~~~~~R~~a~~~l~~~i~~~---w~~~~~~--~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~ 108 (1049)
|..+..+++++.....+.+.++...++-..+... ...+-+. .....-..++..|.+ .+..+...++.+++.++.
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~-~d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNR-QDQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcC-CchhHHHHHHHHHHHHHh
Confidence 5678889999988888999999998888877542 1111100 001223345566665 689999999999999986
Q ss_pred ccCCCCCCcchH----HHHHHhccCC-CHHHHHHHHHHHHHhhhhhh--hcccccHHHHHHHHHHhhCCCC-ChHHHHHH
Q 001584 109 YAVPAGEWPDLL----PFLFQFSQSE-QEEHREVALILFSSLTETIG--QTFRPHFADMQALLLKCLQDET-SNRVRIAA 180 (1049)
Q Consensus 109 ~~~~~~~w~~ll----~~l~~~l~~~-~~~~~~~al~~l~~l~~~~~--~~~~~~~~~l~~~l~~~l~~~~-~~~vr~~a 180 (1049)
.... ..-...+ +.+...+.++ +...+..++.++..+...-. ..|.. ...++.+...++... +......+
T Consensus 131 ~~~~-~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~--~~~v~~L~~~L~~~~~~~Ql~Y~~ 207 (429)
T cd00256 131 FGLA-KMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL--ADGVPTLVKLLSNATLGFQLQYQS 207 (429)
T ss_pred cCcc-ccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH--ccCHHHHHHHHhhccccHHHHHHH
Confidence 5422 1222233 3444444443 35667788888888865432 11110 113455555554322 45566666
Q ss_pred HHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCc------chhhhHH-HHHHHHH
Q 001584 181 LKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP------LLGDSVK-SIVHFSL 253 (1049)
Q Consensus 181 ~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~------~~~~~~~-~l~~~l~ 253 (1049)
+-|+=- ..+.+...+...-.+++|.+++++... .-+.+.+-++.+|.+++..... +....+. .+.+.+-
T Consensus 208 ll~lWl-LSF~~~~~~~~~~~~~i~~l~~i~k~s---~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~ 283 (429)
T cd00256 208 IFCIWL-LTFNPHAAEVLKRLSLIQDLSDILKES---TKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQ 283 (429)
T ss_pred HHHHHH-HhccHHHHHhhccccHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHH
Confidence 555422 222211111111246777777776554 3456777788888888775321 1111122 2222222
Q ss_pred HhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchh
Q 001584 254 EVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH 333 (1049)
Q Consensus 254 ~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~ 333 (1049)
.+...+-.|+++ ...++.+....+..-+ +..-.......+..-..+|.+-. .....+..=+..+.+.
T Consensus 284 ~L~~rk~~DedL-~edl~~L~e~L~~~~k---~ltsfD~Y~~El~sg~L~WSp~H---------~se~FW~EN~~kf~~~ 350 (429)
T cd00256 284 SLEQRKYDDEDL-TDDLKFLTEELKNSVQ---DLSSFDEYKSELRSGRLHWSPVH---------KSEKFWRENADRLNEK 350 (429)
T ss_pred HHhcCCCCcHHH-HHHHHHHHHHHHHHHH---HcCCHHHHHHHHhcCCccCCCCC---------CCchHHHHHHHHHHhc
Confidence 222333334443 3445555544332111 11111112211221111232222 1112222222222211
Q ss_pred chHHHHHHHHhhh-cCCChhHHhHHHHHHHHHhhcChH--HHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHh
Q 001584 334 VFPPVFEFASVSC-QNASPKYREAAVTAIGIISEGCAE--WMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAE 407 (1049)
Q Consensus 334 ~~~~ll~~l~~~l-~~~~~~~r~~al~~l~~i~~~~~~--~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 407 (1049)
-+ .++..+.+.+ .+.++..-..||.=+|.++...|. .+...++ .=..+.+.++++++.||..|+.|+..+..
T Consensus 351 ~~-~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 351 NY-ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred ch-HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 11 2233333334 355677778888889999887542 2222221 34567888999999999999999987743
No 134
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.68 E-value=0.034 Score=70.82 Aligned_cols=348 Identities=14% Similarity=0.178 Sum_probs=198.8
Q ss_pred cCCCHHHHHHHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHhccCC--CCCCcc----hHHHHHHhccCCCHHHHHHHHH
Q 001584 69 AKLSPQLKQLVKQSLIESITLE--HSAPVRRASANVVSIIAKYAVP--AGEWPD----LLPFLFQFSQSEQEEHREVALI 140 (1049)
Q Consensus 69 ~~~~~~~~~~i~~~ll~~l~~e--~~~~vr~~~~~~l~~i~~~~~~--~~~w~~----ll~~l~~~l~~~~~~~~~~al~ 140 (1049)
..++.+....+...|.+.=..| ....-|.-.-+-+..++.+-.. .-.|+. +-+.+.+...+.+..++..|+.
T Consensus 1080 ~~L~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAid 1159 (1780)
T PLN03076 1080 QKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMD 1159 (1780)
T ss_pred ccCCHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 3466666655555554432222 1111233344444444432211 124655 4444444444455667777777
Q ss_pred HHHHhhhhhhh--ccc--ccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhh
Q 001584 141 LFSSLTETIGQ--TFR--PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLA 216 (1049)
Q Consensus 141 ~l~~l~~~~~~--~~~--~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~ 216 (1049)
.|..++-.+-+ .+. .+-.+++.-|...+....+.++|...++|+..++..... +++.=++.++.++.....
T Consensus 1160 sLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~-----nIkSGWktIF~VLs~aa~ 1234 (1780)
T PLN03076 1160 SLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN-----NVKSGWKSMFMVFTTAAY 1234 (1780)
T ss_pred HHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh-----hhhcCcHHHHHHHHHHHh
Confidence 77776654332 111 122456776767666657889999999999998876532 355667888888887777
Q ss_pred cCCHHHHHHHHHHHHHHhccCCcch----hhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhh-h----h--
Q 001584 217 SGEEDVAVIAFEIFDELIESPAPLL----GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS-L----K-- 285 (1049)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~-~----~-- 285 (1049)
+..+.....+++.+..+....-..+ ...+..++..+...+.+. .+.++-..|++++..++..-... . .
T Consensus 1235 d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~-~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~ 1313 (1780)
T PLN03076 1235 DDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSR-FNKDISLNAIAFLRFCATKLAEGDLGSSSRNK 1313 (1780)
T ss_pred CccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCc-CcccccHHHHHHHHHHHHHHHhcccccccccc
Confidence 7788888999999888776533322 256777887777776544 34666777787766553221000 0 0
Q ss_pred -----------------------hc----CChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc----hhc
Q 001584 286 -----------------------KH----KLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA----KHV 334 (1049)
Q Consensus 286 -----------------------~~----~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~----~~~ 334 (1049)
.. .+.-+++..+.....+ +..++|..|..+|-.+....| ...
T Consensus 1314 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D-------~RlEVR~~ALqtLF~iL~~yG~~Fs~~~ 1386 (1780)
T PLN03076 1314 DKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFD-------PRPEIRKSALQVLFDTLRNHGHLFSLPL 1386 (1780)
T ss_pred ccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcC-------CcHHHHHHHHHHHHHHHHHhhccCCHHH
Confidence 00 0111122222222221 233688888877766555555 333
Q ss_pred hH-----HHHHHHHhhhcC------------------------CChhHHhHHHHHHHHHhhcCh---HHHHHhHHHHHHH
Q 001584 335 FP-----PVFEFASVSCQN------------------------ASPKYREAAVTAIGIISEGCA---EWMKEKLESVLHI 382 (1049)
Q Consensus 335 ~~-----~ll~~l~~~l~~------------------------~~~~~r~~al~~l~~i~~~~~---~~~~~~l~~i~~~ 382 (1049)
|. .++|.+.. +++ ..|. ..++..+|..+++-.. +.+...++.++..
T Consensus 1387 W~~if~~VLFPIFd~-l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl-~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~l 1464 (1780)
T PLN03076 1387 WERVFESVLFPIFDY-VRHAIDPSGGDEPEGQGVDGDQGELDQDAWL-YETCTLALQLVVDLFVKFYPTVNPLLKKVLML 1464 (1780)
T ss_pred HHHHHHHHHHHHHHH-HHHhhccccccccccccccccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 23333322 110 1132 4556666666655433 3444567788888
Q ss_pred HHhhcCCCChhHHHHHHHHHHHhHhhhcHHHH-hhhhhHHHHHHHhccCC
Q 001584 383 VLGALRDPEQFVRGAASFALGQFAEYLQPEIV-SHYESVLPCILNALEDE 431 (1049)
Q Consensus 383 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~ll~~l~~~l~~~ 431 (1049)
+..++..++..+-..+..||.++....+..+. +++..++..+.+.+...
T Consensus 1465 l~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~~T 1514 (1780)
T PLN03076 1465 LVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAANAT 1514 (1780)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHh
Confidence 88888989988888999999999887776553 35556666655555443
No 135
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.33 Score=60.35 Aligned_cols=221 Identities=17% Similarity=0.182 Sum_probs=133.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhHHHHHHHHhHHHHHHH
Q 001584 733 DDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAK 812 (1049)
Q Consensus 733 ~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 812 (1049)
+++..+..+..+++.+...+|.+. ++..+....++-+.... +...+....-.++.+-+
T Consensus 888 ~~p~~rc~~~ea~arLaq~v~~~~---f~a~~aq~~fdklas~~-------------------d~i~R~ghslalg~lhk 945 (2067)
T KOG1822|consen 888 PNPKLRCAAAEALARLAQVVGSAP---FVASLAQNSFDKLASAR-------------------DPITRTGHSLALGCLHK 945 (2067)
T ss_pred CChHHHHHHHHHHHHHHHhccccc---hHHHHHHHHHHHHHhcC-------------------CcHHHHHHHHHHHHHHH
Confidence 355566667778888888888643 33333333343333321 11222233344566677
Q ss_pred HhCCC-hHHHHHHHHHHHHHhhccCCCcccchhhhHhHHHHHhhcCCchhhcHhhhHHHHHHhcC-CC--ChHhHHHHHH
Q 001584 813 SMGPH-FAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELA-SP--DAMNRRNAAF 888 (1049)
Q Consensus 813 ~~~~~-~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~-~~--~~~vr~~a~~ 888 (1049)
..|+. -.++...-+..++..-+|++++.++.+++..++-++...|+-..-|+..-+..+.+.+- .+ ..+++++--.
T Consensus 946 yvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R 1025 (2067)
T KOG1822|consen 946 YVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNR 1025 (2067)
T ss_pred hccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhcc
Confidence 77662 22455555556777778888888999999999999998887777788877777777654 33 3567776666
Q ss_pred HHH------HHHhhcCcchhhHH---------HHHHHhhhhhhCCCCCChhHHhhHHHHHHHHHHhCCCCCChhhHHHHH
Q 001584 889 CVG------ELCKNGGESALKYY---------GDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVL 953 (1049)
Q Consensus 889 ~lg------~l~~~~~~~~~~~~---------~~~l~~L~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~l~~~ 953 (1049)
+++ .++...|+.+.+-. .-.+-. ..+....++..+.-.+++|+..+-...|-.++.+.+++.+
T Consensus 1026 ~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~--~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L 1103 (2067)
T KOG1822|consen 1026 CFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAA--CALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQL 1103 (2067)
T ss_pred ccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHH--HHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHH
Confidence 666 66665554433211 111111 1111123344555568888888888878777888999988
Q ss_pred HhhCCCCCcHHhhHHHHHHHHHHHh
Q 001584 954 LKVLPLKEDFEESMAVYNCISTLVL 978 (1049)
Q Consensus 954 l~~lp~~~d~~e~~~~~~~l~~l~~ 978 (1049)
...+...- .--....+.++-+++.
T Consensus 1104 ~~~l~s~~-~i~r~~~~~clrql~~ 1127 (2067)
T KOG1822|consen 1104 CSLLSSSY-LILRRASFSCLRQLVQ 1127 (2067)
T ss_pred HHHhcchh-hhhhhhHHhhhhHHhH
Confidence 88664321 1222344566666554
No 136
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.66 E-value=0.53 Score=62.43 Aligned_cols=96 Identities=18% Similarity=0.357 Sum_probs=74.3
Q ss_pred cHHHHHHHHHHhhCCC--------CChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHH
Q 001584 156 HFADMQALLLKCLQDE--------TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAF 227 (1049)
Q Consensus 156 ~~~~l~~~l~~~l~~~--------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~ 227 (1049)
.+..++|.+.+.+.+. +..+.|..+++.+.++...- .++.+...++..+.+.+..+|++.+..|+
T Consensus 46 ~l~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r~~~~e-------~~~~~~~~~~~~~~~vl~~dNeen~~l~l 118 (3550)
T KOG0889|consen 46 FLEMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNRLPHNE-------VFKPFSQELLKVLMRVLTNDNEENAILCL 118 (3550)
T ss_pred HHHHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHhcccHH-------HHHHHHHHHHHHHHHHHhcccchhhhhHH
Confidence 5677788888777652 34568888888877765543 26677778888888889999999999999
Q ss_pred HHHHHHhccCCcchhhhHHHHHHHHHHhhhC
Q 001584 228 EIFDELIESPAPLLGDSVKSIVHFSLEVSSS 258 (1049)
Q Consensus 228 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~ 258 (1049)
+++..+.....+.++.+++.++.+..++..+
T Consensus 119 kii~~l~r~f~~~~~~~v~~fl~~V~~ly~~ 149 (3550)
T KOG0889|consen 119 KIITDLFRQFKSLVEQHVQPFLDIVIDLYKN 149 (3550)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHh
Confidence 9999999988888888888888877766543
No 137
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.64 E-value=0.0025 Score=59.72 Aligned_cols=135 Identities=21% Similarity=0.267 Sum_probs=112.5
Q ss_pred HhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcH-HHHhhhhhHHHHHHHhccCCC-hHHHHHHHHHHHHHHHhhc
Q 001584 374 EKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP-EIVSHYESVLPCILNALEDES-DEVKEKSYYALAAFCEDMG 451 (1049)
Q Consensus 374 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~ll~~l~~~l~~~~-~~v~~~a~~~l~~l~~~~~ 451 (1049)
..+..++..+.+.++++++.-|+.++..++..++..+. .+.++....+..++..++.++ +.+...++.++..++....
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 45778888899999999999999999999999999844 445788889999999998765 5678899999999987653
Q ss_pred -------cccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHH
Q 001584 452 -------EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFM 510 (1049)
Q Consensus 452 -------~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l 510 (1049)
+...|.++.+++.+++++++ ......++.++..+....+.-|.||..++-..+...+
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 23568999999999998876 6678899999999999999999999988776666544
No 138
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.64 E-value=0.007 Score=63.23 Aligned_cols=199 Identities=18% Similarity=0.183 Sum_probs=141.6
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhHhh--hcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhc--cccc
Q 001584 380 LHIVLGALRDPEQFVRGAASFALGQFAEY--LQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG--EEIL 455 (1049)
Q Consensus 380 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~--~~l~ 455 (1049)
+...+..+.+.....|.+++..+..+... ....+......++..+.+.++....+-+..|+.++.-++-.++ ....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 33444555677789999999988887643 2334456778899999999988776666778888888877754 4455
Q ss_pred cchHHHHHHHHHhhcCCC--HhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHH-----HhccC-------hhhhhhH
Q 001584 456 PFLDPLMGKLLAALENSP--RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIF-----MVLTN-------DEDLRSR 521 (1049)
Q Consensus 456 ~~~~~ll~~l~~~l~~~~--~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~-----l~~~~-------~~~~~~r 521 (1049)
..+..+.+.|.+.+.+.. .++|..++.+++.++-..+.....+ ..+|..+..+ ..... .+...+.
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~-~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEET-EELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHH-HHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 677788888888877653 5678889999998887666544333 2222333322 11111 1123467
Q ss_pred HHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHccc
Q 001584 522 ARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLED 579 (1049)
Q Consensus 522 ~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~ 579 (1049)
..|+.+.+.+...++...+...+...++.+...+++++.++|-++-.+++-+.+....
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 7889999999988876566777777888888888989999999999999988877663
No 139
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.62 E-value=0.0079 Score=60.86 Aligned_cols=237 Identities=9% Similarity=0.092 Sum_probs=156.6
Q ss_pred HHhhhcCCChhHHhHHHHHHHHHhhcChHH-H-HHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhh
Q 001584 342 ASVSCQNASPKYREAAVTAIGIISEGCAEW-M-KEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYES 419 (1049)
Q Consensus 342 l~~~l~~~~~~~r~~al~~l~~i~~~~~~~-~-~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 419 (1049)
+.+.+.++++..|.-|+..|+.+.+..+.. + ...+.-++......+.|. ..+..+ +.++..+...- .--......
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~~-l~gl~~L~~~~-~~~~~~~~~ 80 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQPA-LKGLLALVKMK-NFSPESAVK 80 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHHH-HHHHHHHHhCc-CCChhhHHH
Confidence 445688899999999999999999987643 3 334777888888888654 334433 67776666331 111223445
Q ss_pred HHHHHHHhccCC--ChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcC-CCHhHHHHHHHHHHHHHHHhhhhcc
Q 001584 420 VLPCILNALEDE--SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN-SPRNLQETCMSAIGSVAAAAEQAFI 496 (1049)
Q Consensus 420 ll~~l~~~l~~~--~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~-~~~~v~~~~~~~l~~l~~~~~~~~~ 496 (1049)
++..+.+....+ ....|..+...+..++++....+...-+.++..+++.++. .+|.--..+++.+..+..... +.
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~ 158 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--IS 158 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cc
Confidence 666666544433 3568889999999999988766666667788888887765 467766677777776665554 35
Q ss_pred ccHHHHHHHHHHHHhc-----cChhhh----hhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCCCchhhHHHH
Q 001584 497 PYAERVLELLKIFMVL-----TNDEDL----RSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTH 567 (1049)
Q Consensus 497 ~~~~~~~~~l~~~l~~-----~~~~~~----~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~ 567 (1049)
++.+.++..+.-+.-. .+++.. .++..-..|++. ...| .+..++.+++.+.++...++..++
T Consensus 159 ~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s------~~~f---a~~~~p~LleKL~s~~~~~K~D~L 229 (262)
T PF14500_consen 159 EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS------TPLF---APFAFPLLLEKLDSTSPSVKLDSL 229 (262)
T ss_pred hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC------cHhh---HHHHHHHHHHHHcCCCcHHHHHHH
Confidence 6666666666555432 223211 233222233331 1233 345667778888888888999999
Q ss_pred HHHHHHHHHccc-CccCchhhhhHHH
Q 001584 568 GFFSNIAGVLED-GFAQYLPLVVPLA 592 (1049)
Q Consensus 568 ~~l~~l~~~~~~-~~~~~l~~i~~~l 592 (1049)
..+...+..+|. .+.+|...+...+
T Consensus 230 ~tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 230 QTLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 999999999984 4777777766655
No 140
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.60 E-value=0.00058 Score=62.97 Aligned_cols=122 Identities=21% Similarity=0.320 Sum_probs=96.7
Q ss_pred hhhHHHHHHHhccCCChHHHHHHHHHHHHHHHh-hccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHH---HHHhh
Q 001584 417 YESVLPCILNALEDESDEVKEKSYYALAAFCED-MGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSV---AAAAE 492 (1049)
Q Consensus 417 ~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~-~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l---~~~~~ 492 (1049)
++.++|.++.++.+....-+.-|...+..+++. .++.+.|.+++++..+...+++.++.+...++.++..+ ...+|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 457899999999988877888899999999988 67788999999999999999999999999999999999 67778
Q ss_pred hhccccHHHHHHHHHHHHhccC--------hhhhhhHHHHHHHHHHHHHhhchh
Q 001584 493 QAFIPYAERVLELLKIFMVLTN--------DEDLRSRARATELLGLVAESVGRA 538 (1049)
Q Consensus 493 ~~~~~~~~~~~~~l~~~l~~~~--------~~~~~~r~~a~~~l~~l~~~~~~~ 538 (1049)
+.+.||+.+++|.+.-+.+... .....++....+++..+-+.-|++
T Consensus 116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 9999999999999886554320 011223444445666665555553
No 141
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.60 E-value=0.079 Score=58.84 Aligned_cols=219 Identities=13% Similarity=0.137 Sum_probs=111.7
Q ss_pred HHHHHHHhcCCCcHHHHHHHHhc-CCChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001584 24 EDQIKRLAKDPQVVPALVQHLRT-AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANV 102 (1049)
Q Consensus 24 ~~~L~~~~~~p~~~~~l~~il~~-~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~ 102 (1049)
.+.|......++-......|+.. ..+...+++|+..+-++ |..+ |+..+.-.+.++.+.. |.+..||..+...
T Consensus 9 ~~~L~~a~d~~~~~~~y~~il~~~kg~~k~K~Laaq~I~kf----fk~F-P~l~~~Ai~a~~DLcE-Ded~~iR~~aik~ 82 (556)
T PF05918_consen 9 YEILADAKDKSQHEEDYKEILDGVKGSPKEKRLAAQFIPKF----FKHF-PDLQEEAINAQLDLCE-DEDVQIRKQAIKG 82 (556)
T ss_dssp HHHHHHTGGGGGGHHHHHHHHHGGGS-HHHHHHHHHHHHHH----HCC--GGGHHHHHHHHHHHHT--SSHHHHHHHHHH
T ss_pred HhHhhcCCCcccCHHHHHHHHHHccCCHHHHHHHHHHHHHH----HhhC-hhhHHHHHHHHHHHHh-cccHHHHHHHHHh
Confidence 34444433334445556666654 23788999999877665 3443 3455666666777666 5789999999998
Q ss_pred HHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHH
Q 001584 103 VSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALK 182 (1049)
Q Consensus 103 l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~ 182 (1049)
+-.+++.. + +..+.+...|.|+++++++......=..|..+....+. ..+..++..+... .. .+..+|..+++
T Consensus 83 lp~~ck~~-~-~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k---~tL~~lf~~i~~~-~~-~de~~Re~~lk 155 (556)
T PF05918_consen 83 LPQLCKDN-P-EHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK---GTLTGLFSQIESS-KS-GDEQVRERALK 155 (556)
T ss_dssp GGGG--T----T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHH----H-S-HHHHHHHHH
T ss_pred HHHHHHhH-H-HHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhc-cc-CchHHHHHHHH
Confidence 88888764 2 24478889999999988876666666666666654442 1122233222211 13 46779999999
Q ss_pred HHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhh
Q 001584 183 AIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVS 256 (1049)
Q Consensus 183 ~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~ 256 (1049)
.+..-+.......... -...-..++..+.+.+.+-..+.....+.+|..+--....--......+++++.+.+
T Consensus 156 Fl~~kl~~l~~~~~~p-~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa 228 (556)
T PF05918_consen 156 FLREKLKPLKPELLTP-QKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQA 228 (556)
T ss_dssp HHHHHGGGS-TTTS----HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCcHHHhhc-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHh
Confidence 8866554433211110 011113355555566654333343444444433221100111223455666665444
No 142
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.54 E-value=0.036 Score=57.47 Aligned_cols=354 Identities=16% Similarity=0.136 Sum_probs=182.3
Q ss_pred CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhc------cCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 001584 35 QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHW------AKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAK 108 (1049)
Q Consensus 35 ~~~~~l~~il~~~~~~~~R~~a~~~l~~~i~~~w------~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~ 108 (1049)
+.+..+++++.....+..-++...++-..++..- .......+...-...+..+.. .++.+-+..+.+++.++.
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r-~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNR-QDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhc-CChHHHHHHHHHHHHHHH
Confidence 5566777777654455555666666655554321 111112222223345666664 788888888899998876
Q ss_pred ccC---CCCCCcchHHHHHHhccC-CCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhh-CCCCChHHHHHHHHH
Q 001584 109 YAV---PAGEWPDLLPFLFQFSQS-EQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCL-QDETSNRVRIAALKA 183 (1049)
Q Consensus 109 ~~~---~~~~w~~ll~~l~~~l~~-~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~vr~~a~~~ 183 (1049)
... +.+...-....+...+++ .+...+..+.+||+.++....-...-...+-..++...+ +...+..++...+-|
T Consensus 144 ~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifc 223 (442)
T KOG2759|consen 144 FGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFC 223 (442)
T ss_pred hccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHH
Confidence 432 112333345666666665 556777888889988875433221111111122333333 333566777777666
Q ss_pred HHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCc--chh----hhHHHHHHHHHHhhh
Q 001584 184 IGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP--LLG----DSVKSIVHFSLEVSS 257 (1049)
Q Consensus 184 l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~--~~~----~~~~~l~~~l~~~~~ 257 (1049)
+-.+. +-+.-.+....-++++.+..++... ..+.+.+-++.++.++.+..+. ..+ +.+..=+...++.+.
T Consensus 224 iWlLt-Fn~~~ae~~~~~~li~~L~~Ivk~~---~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~ 299 (442)
T KOG2759|consen 224 IWLLT-FNPHAAEKLKRFDLIQDLSDIVKES---TKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLE 299 (442)
T ss_pred HHHhh-cCHHHHHHHhhccHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHH
Confidence 53332 2111111112235666666665544 3446777788888888877642 111 111111222334444
Q ss_pred CCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHH
Q 001584 258 SHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPP 337 (1049)
Q Consensus 258 ~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ 337 (1049)
....+++--...++++..-.+....... -.......+..-..+|. +.......+..=+..+.++-+ .
T Consensus 300 ~rkysDEDL~~di~~L~e~L~~svq~Ls---SFDeY~sEl~sG~L~WS---------P~Hk~e~FW~eNa~rlnenny-e 366 (442)
T KOG2759|consen 300 ERKYSDEDLVDDIEFLTEKLKNSVQDLS---SFDEYKSELRSGRLEWS---------PVHKSEKFWRENADRLNENNY-E 366 (442)
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHhCCcCCC---------ccccccchHHHhHHHHhhccH-H
Confidence 4444555455556666654432211111 11112222222222332 222222222222222222111 2
Q ss_pred HHHHHHhhhc-CCChhHHhHHHHHHHHHhhcChHHHHHhHH--HHHHHHHhhcCCCChhHHHHHHHHHHHhHh
Q 001584 338 VFEFASVSCQ-NASPKYREAAVTAIGIISEGCAEWMKEKLE--SVLHIVLGALRDPEQFVRGAASFALGQFAE 407 (1049)
Q Consensus 338 ll~~l~~~l~-~~~~~~r~~al~~l~~i~~~~~~~~~~~l~--~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 407 (1049)
++..+...++ +.++..-..|+.=+|......|+.-. .+. ..=..+...+++++|.||.-|+.|+..+..
T Consensus 367 llkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~-vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 367 LLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKA-VVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhH-HHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 3333334443 34577777888889998887665321 122 223577888999999999999999877654
No 143
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.53 E-value=0.29 Score=56.16 Aligned_cols=109 Identities=18% Similarity=0.244 Sum_probs=79.6
Q ss_pred HHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccc
Q 001584 377 ESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEIL 455 (1049)
Q Consensus 377 ~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~ 455 (1049)
..++..|+..++ |....|+.+|+..+..+..++. ....++..+-.|.....|+...||..++.+|+.+...-+. +.
T Consensus 575 ~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD--~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr-~~ 651 (1529)
T KOG0413|consen 575 KDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCD--EASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPR-LF 651 (1529)
T ss_pred HHHHHHHHHHhccCCCcccchhhHHHHHHHHhccc--hhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCch-hh
Confidence 367788888888 7778899999999998888874 3445556666777778888889999999999987655432 22
Q ss_pred cchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHH
Q 001584 456 PFLDPLMGKLLAALENSPRNLQETCMSAIGSVA 488 (1049)
Q Consensus 456 ~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~ 488 (1049)
..-..-+..+...+.+.+..+.+.++..|..+.
T Consensus 652 ~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 652 SLSSKWLHTLISMLNDTESDVTEHARKLIMKVL 684 (1529)
T ss_pred hhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 233345566677777777788888887666543
No 144
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.53 E-value=0.0035 Score=58.69 Aligned_cols=136 Identities=20% Similarity=0.228 Sum_probs=110.2
Q ss_pred hhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcC-hHHHHHhHHHHHHHHHhhcCC-CChhHHHHHHHHHHHhHhhh
Q 001584 332 KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC-AEWMKEKLESVLHIVLGALRD-PEQFVRGAASFALGQFAEYL 409 (1049)
Q Consensus 332 ~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~-~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~ 409 (1049)
+..+..+...+..++++.++..|..++..++.+++.+ ++.+..+....+..+++.++. ..+.++..++.++..+....
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 3456677788888999999999999999999999988 666668888889999998885 44578899999999988766
Q ss_pred cH--H-----HHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhh
Q 001584 410 QP--E-----IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAAL 469 (1049)
Q Consensus 410 ~~--~-----~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l 469 (1049)
.. + ..++++.+++.+++.+++ ..+...++.+|..++..++..+.||...+-..+...+
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 32 2 245677888888887776 4677889999999999999999999988877776654
No 145
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.49 E-value=0.34 Score=55.89 Aligned_cols=164 Identities=12% Similarity=0.190 Sum_probs=113.0
Q ss_pred CCCHHHHHHHHHHH-HHHhcCCCcHHHHHHHHhc--CCChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHhhc
Q 001584 14 MPDNDARRQAEDQI-KRLAKDPQVVPALVQHLRT--AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLE 90 (1049)
Q Consensus 14 s~d~~~r~~a~~~L-~~~~~~p~~~~~l~~il~~--~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e 90 (1049)
|.+...|..|-..+ .++....++-..+..++.. +.+.+++++--.++.++ ....|+..-...+.+++-+. +
T Consensus 30 s~n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~y-----ak~~P~~~lLavNti~kDl~-d 103 (757)
T COG5096 30 SSNDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERY-----AKLKPELALLAVNTIQKDLQ-D 103 (757)
T ss_pred ccChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----hccCHHHHHHHHHHHHhhcc-C
Confidence 44455566666665 6676655554455555543 56888888777777665 33444555555566666666 4
Q ss_pred CCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCC
Q 001584 91 HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQD 170 (1049)
Q Consensus 91 ~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 170 (1049)
+++.+|..+...++.+-.. .-|+.+++.+.+++.++.+.+|..|..++..+....++.+.. ......+...+.|
T Consensus 104 ~N~~iR~~AlR~ls~l~~~----el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~--~g~~~~l~~l~~D 177 (757)
T COG5096 104 PNEEIRGFALRTLSLLRVK----ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHE--LGLIDILKELVAD 177 (757)
T ss_pred CCHHHHHHHHHHHHhcChH----HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhc--ccHHHHHHHHhhC
Confidence 8999998887777776433 368889999999999999999999999999988655533211 1134455556667
Q ss_pred CCChHHHHHHHHHHHHhhcc
Q 001584 171 ETSNRVRIAALKAIGSFLEF 190 (1049)
Q Consensus 171 ~~~~~vr~~a~~~l~~~~~~ 190 (1049)
+++.|...|+.++..+..-
T Consensus 178 -~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 178 -SDPIVIANALASLAEIDPE 196 (757)
T ss_pred -CCchHHHHHHHHHHHhchh
Confidence 9999999988888766553
No 146
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.48 E-value=0.35 Score=55.61 Aligned_cols=106 Identities=14% Similarity=0.224 Sum_probs=70.7
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccC
Q 001584 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (1049)
Q Consensus 158 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~ 237 (1049)
..++..+...+..+....|+..|++.+.+...+.+ ....++..+-.++....++-..+++.++..|.++....
T Consensus 575 ~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD-------~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~ 647 (1529)
T KOG0413|consen 575 KDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCD-------EASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRD 647 (1529)
T ss_pred HHHHHHHHHHhccCCCcccchhhHHHHHHHHhccc-------hhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhC
Confidence 44566777777732566799999999999988874 23445665666666666666778999999999998887
Q ss_pred Ccchh---hhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHH
Q 001584 238 APLLG---DSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWL 276 (1049)
Q Consensus 238 ~~~~~---~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l 276 (1049)
|..+. ..+..++. ++. +.+..+...|.+++..+
T Consensus 648 pr~~~~~~~wl~~li~----~~~--d~es~v~e~a~~~i~k~ 683 (1529)
T KOG0413|consen 648 PRLFSLSSKWLHTLIS----MLN--DTESDVTEHARKLIMKV 683 (1529)
T ss_pred chhhhhhHHHHHHHHH----HHh--ccHHHHHHHHHHHHHHH
Confidence 77662 22222322 222 23566777777765544
No 147
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.46 E-value=0.085 Score=53.53 Aligned_cols=240 Identities=14% Similarity=0.142 Sum_probs=145.5
Q ss_pred HHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhh
Q 001584 164 LLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGD 243 (1049)
Q Consensus 164 l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 243 (1049)
+-..|++ +++.+|..|+.+|+.++...+...-. ..-+..+++.....+ .|......++..+..++ ....+-..
T Consensus 4 Lg~~Lts-ed~~~R~ka~~~Ls~vL~~lp~~~L~---~~ev~~L~~F~~~rl--~D~~~~~~~l~gl~~L~-~~~~~~~~ 76 (262)
T PF14500_consen 4 LGEYLTS-EDPIIRAKALELLSEVLERLPPDFLS---RQEVQVLLDFFCSRL--DDHACVQPALKGLLALV-KMKNFSPE 76 (262)
T ss_pred hhhhhCC-CCHHHHHHHHHHHHHHHHhCCHhhcc---HHHHHHHHHHHHHHh--ccHhhHHHHHHHHHHHH-hCcCCChh
Confidence 4466788 89999999999999999888632111 122344555544444 45566677788888887 33444455
Q ss_pred hHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHH--HHHH
Q 001584 244 SVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDR--AAAE 321 (1049)
Q Consensus 244 ~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~--~a~~ 321 (1049)
....+++.+.+-...+......|..+++++..+.+........ .-..++..++..+... .++|. .+.+
T Consensus 77 ~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~--~~~~fv~~~i~~~~gE--------kDPRnLl~~F~ 146 (262)
T PF14500_consen 77 SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS--MGDDFVYGFIQLIDGE--------KDPRNLLLSFK 146 (262)
T ss_pred hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh--chhHHHHHHHHHhccC--------CCHHHHHHHHH
Confidence 5666666666544444556788999999999998776544432 2233444444443322 23553 3556
Q ss_pred HHHHHHHHcc-hhchHHHHHHHHhhh----cC-C-Ch--hHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCCh
Q 001584 322 VIDTMALNLA-KHVFPPVFEFASVSC----QN-A-SP--KYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQ 392 (1049)
Q Consensus 322 ~l~~l~~~~~-~~~~~~ll~~l~~~l----~~-~-~~--~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~ 392 (1049)
.+..+...++ ......++..+..++ +. + ++ -.|+.--.+|.......+ .+.+..+|.++..|.++.+
T Consensus 147 l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~----~fa~~~~p~LleKL~s~~~ 222 (262)
T PF14500_consen 147 LLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP----LFAPFAFPLLLEKLDSTSP 222 (262)
T ss_pred HHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH----hhHHHHHHHHHHHHcCCCc
Confidence 6666666665 444445555444432 11 1 22 233333333333222211 2345678999999999999
Q ss_pred hHHHHHHHHHHHhHhhhcHH-HHhhhhhHHHHH
Q 001584 393 FVRGAASFALGQFAEYLQPE-IVSHYESVLPCI 424 (1049)
Q Consensus 393 ~vr~~a~~~l~~l~~~~~~~-~~~~~~~ll~~l 424 (1049)
.++.-++.+|...+..++.. +.+|+..+...+
T Consensus 223 ~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 223 SVKLDSLQTLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 99999999999998887653 455655555444
No 148
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.41 E-value=0.0015 Score=60.36 Aligned_cols=94 Identities=13% Similarity=0.154 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhhccCCCcccchhhhHhHHHHHhh-cCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHH---Hhhc
Q 001584 822 FAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARD-MGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGEL---CKNG 897 (1049)
Q Consensus 822 ~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~-~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~lg~l---~~~~ 897 (1049)
++.++|.+...+...+.+ .+-.|...+.++++. .+..+.|.++++++.+-..|+..+++|..+++.+|-.+ ....
T Consensus 36 y~~~Lpif~dGL~Et~~P-y~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHP-YRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCcc-HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 457788888888776664 588999999999999 66669999999999999999999999999999999999 5666
Q ss_pred CcchhhHHHHHHHhhhhhh
Q 001584 898 GESALKYYGDILRGLYPLF 916 (1049)
Q Consensus 898 ~~~~~~~~~~~l~~L~~~l 916 (1049)
|+...||+.++++.+.-..
T Consensus 115 G~aLvPyyrqLLp~ln~f~ 133 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLNLFK 133 (183)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 8889999999999886433
No 149
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.41 E-value=0.065 Score=57.48 Aligned_cols=226 Identities=16% Similarity=0.218 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCC-----CHhHHHHHHHHHHHHHHHhh--hhcc--ccHHHHHH
Q 001584 434 EVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS-----PRNLQETCMSAIGSVAAAAE--QAFI--PYAERVLE 504 (1049)
Q Consensus 434 ~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~-----~~~v~~~~~~~l~~l~~~~~--~~~~--~~~~~~~~ 504 (1049)
.++..+|..+..+.+.+.+.+.+|++.++...++++... ...+-..++..++++++... ..|. +.++.++.
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie 190 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIE 190 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHH
Confidence 577888999999999998888999999999999988652 23355667777776654332 1121 22222222
Q ss_pred HHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCc
Q 001584 505 LLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQY 584 (1049)
Q Consensus 505 ~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~~~~~ 584 (1049)
+++- |...+|..- .+.|+..-.+.+..-++. ++...-|.+|..++..+++..++...+.
T Consensus 191 ---~VI~----Pnl~~~e~D------------~ElfEddP~EYIrrd~e~--sd~~TrR~AA~dfl~~L~~~~~~~v~~i 249 (370)
T PF08506_consen 191 ---KVIF----PNLCLREED------------EELFEDDPEEYIRRDLEG--SDSDTRRRAACDFLRSLCKKFEKQVTSI 249 (370)
T ss_dssp ---HTHH----HHHS--HHH------------HHHHHHSHHHHHHHHSCS--S---SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---Hhcc----CccCCCHHH------------HHHHccCHHHHHHhhccc--cccCCcHHHHHHHHHHHHHHHhHHHHHH
Confidence 1110 111111111 123333333444443332 3445678899999999999988887777
Q ss_pred hhhhhHHHHhhccCCCCCccCCCCCchhhhccCCCCCCCcchhhcccccceeeeccchhhHHHHHHHHHHHHHHhhh---
Q 001584 585 LPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKS--- 661 (1049)
Q Consensus 585 l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~~--- 661 (1049)
+...+..++.....++. .+| ..|.+|+..++.++.....
T Consensus 250 ~~~~i~~~l~~y~~~~~--------~~w------------------------------~~KD~Al~Li~ala~k~~t~~~ 291 (370)
T PF08506_consen 250 LMQYIQQLLQQYASNPS--------NNW------------------------------RSKDGALYLIGALASKGSTTKS 291 (370)
T ss_dssp HHHHHHHHHHHHHH-TT--------T-H------------------------------HHHHHHHHHHHHHHBSS--BTT
T ss_pred HHHHHHHHHHHHhhCCc--------ccH------------------------------HHHHHHHHHHHHHHhhhccccC
Confidence 77777777764432210 011 2689999999998776521
Q ss_pred ---------hchhhHHH-HHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHhhh
Q 001584 662 ---------SYAPFLEE-SLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTE 731 (1049)
Q Consensus 662 ---------~~~~~~~~-~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 731 (1049)
.+..|+.+ +++.+. .-...++-+|..|+..+..+-.. .-++.+..++|.+.+.+..
T Consensus 292 Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~-------------l~~~~l~~~~~~l~~~L~~ 357 (370)
T PF08506_consen 292 GVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQ-------------LPKEQLLQIFPLLVNHLQS 357 (370)
T ss_dssp B-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGG-------------S-HHHHHHHHHHHHHHTTS
T ss_pred CcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhh-------------CCHHHHHHHHHHHHHHhCC
Confidence 11222222 122222 11134455677777766555321 1245666777888777765
Q ss_pred C
Q 001584 732 D 732 (1049)
Q Consensus 732 ~ 732 (1049)
+
T Consensus 358 ~ 358 (370)
T PF08506_consen 358 S 358 (370)
T ss_dssp S
T ss_pred C
Confidence 4
No 150
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.40 E-value=0.00024 Score=44.51 Aligned_cols=30 Identities=47% Similarity=0.554 Sum_probs=26.9
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhHhh
Q 001584 379 VLHIVLGALRDPEQFVRGAASFALGQFAEY 408 (1049)
Q Consensus 379 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 408 (1049)
++|.+++.++|+++.||.+|+++++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999875
No 151
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.40 E-value=0.0018 Score=60.59 Aligned_cols=140 Identities=21% Similarity=0.251 Sum_probs=97.1
Q ss_pred hHHhHHHHHHHHHhhc-ChHHHHHhHHHHHHH------------HHhhcCCCChhHHHHHHHHHHHhHhhhcHHHH----
Q 001584 352 KYREAAVTAIGIISEG-CAEWMKEKLESVLHI------------VLGALRDPEQFVRGAASFALGQFAEYLQPEIV---- 414 (1049)
Q Consensus 352 ~~r~~al~~l~~i~~~-~~~~~~~~l~~i~~~------------l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---- 414 (1049)
+.|.+|+.+|+.+++. .+..+..+...++|. +.-.+.||+++||.+|+.++..+.+..++.+.
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3567777777777766 333444444433332 23345799999999999999998776543211
Q ss_pred ----------------hhhhhHHHHHHHhccCC-ChHHHHHHHHHHHHHHHhhc-cccc-cchHHHHHHHHHhhcCCCHh
Q 001584 415 ----------------SHYESVLPCILNALEDE-SDEVKEKSYYALAAFCEDMG-EEIL-PFLDPLMGKLLAALENSPRN 475 (1049)
Q Consensus 415 ----------------~~~~~ll~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~~-~~l~-~~~~~ll~~l~~~l~~~~~~ 475 (1049)
..+.++=..|+..++.+ +..+....++++..++...+ ..+. .+++.++..+...+.+.+..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 11223334455555544 56677889999999998874 4454 57888889999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 001584 476 LQETCMSAIGSVAAAA 491 (1049)
Q Consensus 476 v~~~~~~~l~~l~~~~ 491 (1049)
++..++.+++.+....
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999887653
No 152
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.12 Score=57.64 Aligned_cols=127 Identities=19% Similarity=0.211 Sum_probs=92.4
Q ss_pred hhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhc
Q 001584 332 KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQ 410 (1049)
Q Consensus 332 ~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~ 410 (1049)
...+..+++. ..++.|-.+|++|..+||.++-..++ .++.+++.|. +-++.||..+..+||-.|..-+
T Consensus 553 nkair~lLh~---aVsD~nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG 621 (929)
T KOG2062|consen 553 NKAIRRLLHV---AVSDVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTG 621 (929)
T ss_pred hhhHHHhhcc---cccccchHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC
Confidence 3444445543 35678889999999999998865443 2444455554 4689999999999998887655
Q ss_pred HHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHh
Q 001584 411 PEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRN 475 (1049)
Q Consensus 411 ~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~ 475 (1049)
.. ..+..|-....|+..-||..|+-++.-+.-...+.+-|-...+-..+.+.+.+.+..
T Consensus 622 ~~------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 622 LK------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHED 680 (929)
T ss_pred cH------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhH
Confidence 31 122223333458888899999999999988888888888888989888888776554
No 153
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.36 E-value=0.075 Score=55.09 Aligned_cols=112 Identities=17% Similarity=0.146 Sum_probs=78.5
Q ss_pred HHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcCh---HHHH-HhHHHHHHHHHh-hcCCCChhHHHHHHHHHHHhHhhhc
Q 001584 336 PPVFEFASVSCQNASPKYREAAVTAIGIISEGCA---EWMK-EKLESVLHIVLG-ALRDPEQFVRGAASFALGQFAEYLQ 410 (1049)
Q Consensus 336 ~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~---~~~~-~~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~ 410 (1049)
|.+++++..++.|.|.....++..++|.++..-. ..+. ..++.++..+.+ .--|.+.+++.+++.+|..+.--.+
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 6689999999999999999999999999988633 2222 234555555554 3347888999999999998875443
Q ss_pred HHHHhhh--hhHHHHHHHhccCCChHHHHHHHHHHHHHHHh
Q 001584 411 PEIVSHY--ESVLPCILNALEDESDEVKEKSYYALAAFCED 449 (1049)
Q Consensus 411 ~~~~~~~--~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~ 449 (1049)
. +.++ ..+...++..+....|.|...-...+.-+...
T Consensus 394 n--ka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~ 432 (604)
T KOG4500|consen 394 N--KAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDS 432 (604)
T ss_pred c--hhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhc
Confidence 2 1121 34666777777777778887767666655543
No 154
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.0053 Score=60.67 Aligned_cols=143 Identities=17% Similarity=0.206 Sum_probs=117.6
Q ss_pred HhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHH
Q 001584 343 SVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLP 422 (1049)
Q Consensus 343 ~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~ 422 (1049)
...+.+.+|.....++..+..+++..++.+...+..++-.+++.++++...|-.+|+.+++.+.+.+...+.+.++.++.
T Consensus 94 l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~ 173 (334)
T KOG2933|consen 94 LKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVT 173 (334)
T ss_pred HHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577899999999999999999988888888899999999999999999999999999999999998877777777887
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHh
Q 001584 423 CILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAA 491 (1049)
Q Consensus 423 ~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~ 491 (1049)
.|+..-...+.-||+.|-.+|..++..... ..+++.|...+.+.++.++..+..+..+.....
T Consensus 174 ~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl 236 (334)
T KOG2933|consen 174 QLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRL 236 (334)
T ss_pred HHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhccccccceec
Confidence 777766666778999999999998877633 246667777777888888877776665544433
No 155
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.31 E-value=0.01 Score=69.15 Aligned_cols=179 Identities=13% Similarity=0.181 Sum_probs=143.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHcc----hhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHh
Q 001584 310 DDDLAPDRAAAEVIDTMALNLA----KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLG 385 (1049)
Q Consensus 310 d~~~~~~~~a~~~l~~l~~~~~----~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~ 385 (1049)
+.+|.-|..|.+.+-.....-+ ......+...+.-...+.|-..-.-+..+|..|+.+.+.....+...++|.++.
T Consensus 264 s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld 343 (815)
T KOG1820|consen 264 SKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLD 343 (815)
T ss_pred ccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHH
Confidence 3567778777665544443322 223344444444456778888888899999999999998888999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhcccc--ccchHHHHH
Q 001584 386 ALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEI--LPFLDPLMG 463 (1049)
Q Consensus 386 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l--~~~~~~ll~ 463 (1049)
.+.+..+.+|.++..++..++... .+..+.+.+...+.+.++.++..+...+...+...+... .+-...+.+
T Consensus 344 ~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p 417 (815)
T KOG1820|consen 344 RLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVP 417 (815)
T ss_pred HhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhH
Confidence 999999999999999998888743 355688899999999999999999999999998886432 245678889
Q ss_pred HHHHhhcCCCHhHHHHHHHHHHHHHHHhhhh
Q 001584 464 KLLAALENSPRNLQETCMSAIGSVAAAAEQA 494 (1049)
Q Consensus 464 ~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~ 494 (1049)
.+....++.+..||..+.++++.+....|+.
T Consensus 418 ~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 418 HLIKHINDTDKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred HHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999988753
No 156
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.30 E-value=0.0083 Score=60.21 Aligned_cols=186 Identities=13% Similarity=0.164 Sum_probs=118.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCC--cchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhh--ccccc
Q 001584 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEW--PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ--TFRPH 156 (1049)
Q Consensus 81 ~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w--~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~--~~~~~ 156 (1049)
+.|+..|....++.++..+..+++..+.+...++.+ -..++.+...+.++++.+|..|+.++..+...... .+..+
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~ 94 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY 94 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 456777887688999999999999987765443334 33588999999999999999999999988755442 22333
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 001584 157 FADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIES 236 (1049)
Q Consensus 157 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 236 (1049)
++++... ...++-+..++.+++++|.++.-.... ...+...+|.++ +++..++...+..++++|..+.+.
T Consensus 95 i~~Vc~~---~~s~~lns~~Q~agLrlL~nLtv~~~~---~~~l~~~i~~ll----~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 95 IPQVCEE---TVSSPLNSEVQLAGLRLLTNLTVTNDY---HHMLANYIPDLL----SLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHHHH---HhcCCCCCHHHHHHHHHHHccCCCcch---hhhHHhhHHHHH----HHHHcCChHHHHHHHHHHHHhccC
Confidence 3433333 233334677889999999988533211 112334455554 456778888999999999998875
Q ss_pred CCcchhhhH-HHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHh
Q 001584 237 PAPLLGDSV-KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAK 278 (1049)
Q Consensus 237 ~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~ 278 (1049)
..- ....+ .+.+..++.++..+ .+.++...++.++..+.+
T Consensus 165 p~~-~~~Ll~~q~~~~~~~Lf~~~-~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 165 PDM-TRELLSAQVLSSFLSLFNSS-ESKENLLRVLTFFENINE 205 (254)
T ss_pred HHH-HHHHHhccchhHHHHHHccC-CccHHHHHHHHHHHHHHH
Confidence 422 11111 12333334444333 345555566666555543
No 157
>PF05536 Neurochondrin: Neurochondrin
Probab=97.29 E-value=0.52 Score=53.78 Aligned_cols=241 Identities=12% Similarity=0.118 Sum_probs=135.0
Q ss_pred CCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhccCCCHH----HHHHHHHHHHHHHhhc-------CCHHHHHHHHH
Q 001584 33 DPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQ----LKQLVKQSLIESITLE-------HSAPVRRASAN 101 (1049)
Q Consensus 33 ~p~~~~~l~~il~~~~~~~~R~~a~~~l~~~i~~~w~~~~~~----~~~~i~~~ll~~l~~e-------~~~~vr~~~~~ 101 (1049)
+++.+..++.++.+.. .+.|..|..++++.+... ..+.. ..+.+=-.++..|... +....+..+..
T Consensus 3 ~~~~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~--~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavs 79 (543)
T PF05536_consen 3 QSASLEKCLSLLKSAD-DTERFAGLLLVTKLLDAD--DEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVS 79 (543)
T ss_pred chHHHHHHHHHhccCC-cHHHHHHHHHHHHcCCCc--hhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHH
Confidence 3455667777776544 666766666666665421 11111 1112222333433321 12334555555
Q ss_pred HHHHHHhccC--CCCCCcchHHHHHHhccCCCH-HHHHHHHHHHHHhhhhhhhcccccH-HHHHHHHHHhhCCCCChHHH
Q 001584 102 VVSIIAKYAV--PAGEWPDLLPFLFQFSQSEQE-EHREVALILFSSLTETIGQTFRPHF-ADMQALLLKCLQDETSNRVR 177 (1049)
Q Consensus 102 ~l~~i~~~~~--~~~~w~~ll~~l~~~l~~~~~-~~~~~al~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~vr 177 (1049)
+++.++...- .+.+.-.-+|.+.+.+.+.+. .....++++|..++..-. ...... ...++.+...+.+ .+...
T Consensus 80 vL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~-G~~aLl~~g~v~~L~ei~~~--~~~~~ 156 (543)
T PF05536_consen 80 VLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPE-GAKALLESGAVPALCEIIPN--QSFQM 156 (543)
T ss_pred HHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcH-hHHHHHhcCCHHHHHHHHHh--CcchH
Confidence 5666655211 112345568899998877666 778889999999984322 111111 1223344444433 34467
Q ss_pred HHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCc------chhhhHHHHHHH
Q 001584 178 IAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP------LLGDSVKSIVHF 251 (1049)
Q Consensus 178 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~------~~~~~~~~l~~~ 251 (1049)
..|+..+..++..... ..+......+..++..+...........+...+..|..+....+. .-.....++...
T Consensus 157 E~Al~lL~~Lls~~~~-~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~g 235 (543)
T PF05536_consen 157 EIALNLLLNLLSRLGQ-KSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKG 235 (543)
T ss_pred HHHHHHHHHHHHhcch-hhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHH
Confidence 7788888777665432 122222333445555555555544445667788889888776632 123356677777
Q ss_pred HHHhhhCCCCChHHHHHHHHHHHHHHhhhH
Q 001584 252 SLEVSSSHNLEPNTRHQAIQIISWLAKYKY 281 (1049)
Q Consensus 252 l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~ 281 (1049)
+..++.++ ..+.-|..++.+...+.+..+
T Consensus 236 l~~iL~sr-~~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 236 LRDILQSR-LTPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHHHHhC
Confidence 77788776 567889999888888776533
No 158
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.28 E-value=0.0027 Score=52.67 Aligned_cols=87 Identities=24% Similarity=0.341 Sum_probs=70.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHH
Q 001584 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADM 160 (1049)
Q Consensus 81 ~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l 160 (1049)
+.|++.+.+++++.+|..++.+++.+ .-++.+|.+.+.++++++.+|..++..++.+- -++.
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~--------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~~~~ 63 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL--------GDPEAIPALIELLKDEDPMVRRAAARALGRIG----------DPEA 63 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC--------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------HHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc--------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------CHHH
Confidence 45778886689999999999998832 23578999999999999999999999999773 2556
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHH
Q 001584 161 QALLLKCLQDETSNRVRIAALKAIG 185 (1049)
Q Consensus 161 ~~~l~~~l~~~~~~~vr~~a~~~l~ 185 (1049)
++.+.+.+.++++..||..|+.+|+
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 7788888887567778999998874
No 159
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.7 Score=53.05 Aligned_cols=327 Identities=15% Similarity=0.174 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHHhhhhchhhHHHHHHHHHhhhc--CCChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHH
Q 001584 645 KAAATQALGLFALHTKSSYAPFLEESLKILVRHAS--YFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVM 722 (1049)
Q Consensus 645 k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1049)
-+.+...+..+++.++..+.||..+++..+...+. ...+..|.....+++.++.+.. ++...+++..++
T Consensus 564 s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~---------pEe~~kyl~~li 634 (982)
T KOG2022|consen 564 SEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLK---------PEEIPKYLMKLI 634 (982)
T ss_pred HHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhcc---------HHhHHHHHHHHH
Confidence 44566778888999999999999999988877644 2345678888889988887643 333344444444
Q ss_pred HHHHHHh----hhC-ChHHHHHHHH---HHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccccch
Q 001584 723 NIFIRTM----TED-DDKDVVAQAC---TSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTA 794 (1049)
Q Consensus 723 ~~l~~~l----~~~-~~~~~~~~~~---~~l~~~i~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 794 (1049)
+.++..+ ..+ ++++.....+ .++..+.. -|.... |+.|-+..+
T Consensus 635 n~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~Lft--------------------SL~~~~---------~~~d~d~~~ 685 (982)
T KOG2022|consen 635 NPILSQLEINLAPGIDDQENHLRIAFQLNTISALFT--------------------SLINKK---------DIIDTDQPE 685 (982)
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHh--------------------ccCCCC---------ccccccchh
Confidence 4444433 221 2233222111 11122111 111111 111111111
Q ss_pred hhHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHH----hhccCCCcccchhhhHhHHHHHhhcCCch-hhcHhhhHH
Q 001584 795 HDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMK----FAKSSRPLQDRTMVVATLAEVARDMGSPI-AAYVDRVMP 869 (1049)
Q Consensus 795 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~----~l~~~~~~~~r~~a~~~l~~l~~~~~~~~-~~~~~~i~~ 869 (1049)
.+..-... .....+..+++|.+-+ +++.. .+-..++.+++.=++..+..+ .|+++.+++
T Consensus 686 ~~~~~~qq-------------~~il~v~~k~i~~~~kv~s~~~~~s---~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~ 749 (982)
T KOG2022|consen 686 QREEPFQQ-------------FPILQVLQKAIPVFEKVLSMWLGLS---DVVEASCIIMVKGVRSLLTSFPEPMLPSLCP 749 (982)
T ss_pred hhcccccc-------------CCHHHHHHHHHHHHHHHHHHHhcch---hHHHHHHHHHHhccccccccchhhhHHHHHH
Confidence 11000000 0111222333333332 23322 233444444444455555554 788999999
Q ss_pred HHHHhcCCCChHhHHHHHHHHHH---HHhhcCcchhhH----HHHHHHhhhhhhCCC--CCChhHHhhHHHHHHHHHHhC
Q 001584 870 LVLKELASPDAMNRRNAAFCVGE---LCKNGGESALKY----YGDILRGLYPLFGDS--EPDDAVRDNAAGAVARMIMVN 940 (1049)
Q Consensus 870 ~l~~~l~~~~~~vr~~a~~~lg~---l~~~~~~~~~~~----~~~~l~~L~~~l~~~--~~~~~~~~~a~~~l~~i~~~~ 940 (1049)
.+.+....+... .-.++. ++....+.-.|. +...++...-++++. .++.++.+..++++..++...
T Consensus 750 Fi~r~~~~~~a~-----tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~ 824 (982)
T KOG2022|consen 750 FIVRFLTSCLAV-----TLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKI 824 (982)
T ss_pred HHHHhccchHHH-----HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhC
Confidence 988855543322 222222 222222222222 222333333344432 356788888899999999999
Q ss_pred CCCC-C----hh-hHHHHHHhhCCCCCcHHhhHHHHHHHHHHHhhCChhhcchhhHHHH--------HHHHHhcCCCCCh
Q 001584 941 PQSI-P----LN-QVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQILSLVPELVN--------LFAEVVVSPEESS 1006 (1049)
Q Consensus 941 ~~~~-~----~~-~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~ 1006 (1049)
|+.. | .. -+++..+..|+..+- -..+.+..++..++.....+....+...+. .+...+.. .-+-
T Consensus 825 P~~~~~~~~~~ts~i~~~a~~ll~~pE~-~~i~aa~qF~t~~~~~~~s~~~~tv~~~V~~~G~~Li~~im~~vgg-~~~R 902 (982)
T KOG2022|consen 825 PKFLEPSMLAFTSLILICAFILLNSPEP-TTIRAASQFLTALATYATSHDLVTVTSVVAEIGPILIYAIMRGVGG-EASR 902 (982)
T ss_pred cCccccchHHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHHHhhcccchhHHHHHHHHhcchHHHHHHHHHhcC-cCcc
Confidence 9875 3 22 345577788887754 455667788888776554433333322222 22222221 1223
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHh
Q 001584 1007 EVKSQVGMAFSHLISLYGQQMQPLLS 1032 (1049)
Q Consensus 1007 ~~~~~~~~~l~~l~~~~~~~~~~~~~ 1032 (1049)
...+.+..+|..+...++...+..+.
T Consensus 903 S~ld~~aDIL~al~~k~~se~r~wl~ 928 (982)
T KOG2022|consen 903 STLDALADILLALNAKFFSETRTWLK 928 (982)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 45667788888888888876655554
No 160
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.18 E-value=0.25 Score=53.57 Aligned_cols=303 Identities=11% Similarity=0.072 Sum_probs=143.4
Q ss_pred hccCCCHHHHHHHHHHHHHhhhhhhhc-ccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhh
Q 001584 126 FSQSEQEEHREVALILFSSLTETIGQT-FRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFI 204 (1049)
Q Consensus 126 ~l~~~~~~~~~~al~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~ 204 (1049)
.+..+++-....++.++..++...+.. .....+.+.+.+...+....+...+..++.++..++...+-....-. .+.+
T Consensus 109 lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~-~~~v 187 (429)
T cd00256 109 LLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL-ADGV 187 (429)
T ss_pred HHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH-ccCH
Confidence 556677778888999999887543321 12233445566666666533456677777888888765532111111 2245
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhH--HHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHh
Q 001584 205 PSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSV--KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYN 282 (1049)
Q Consensus 205 ~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~ 282 (1049)
+.+...+.... .+....-.++-|++-+.-... . ...+ ..+++.+..++.... .+.+-+.++..+..+......
T Consensus 188 ~~L~~~L~~~~--~~~Ql~Y~~ll~lWlLSF~~~-~-~~~~~~~~~i~~l~~i~k~s~-KEKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 188 PTLVKLLSNAT--LGFQLQYQSIFCIWLLTFNPH-A-AEVLKRLSLIQDLSDILKEST-KEKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred HHHHHHHhhcc--ccHHHHHHHHHHHHHHhccHH-H-HHhhccccHHHHHHHHHHhhh-hHHHHHHHHHHHHHHhhcccc
Confidence 55655543221 233444445545544422211 1 1111 245666666665443 345555566667776643211
Q ss_pred hhhhcCChHHHHH----HHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcch-hchHHHHHHHHhhhcCCChh--HHh
Q 001584 283 SLKKHKLVIPILQ----VMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK-HVFPPVFEFASVSCQNASPK--YRE 355 (1049)
Q Consensus 283 ~~~~~~~~~~il~----~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~-~~~~~ll~~l~~~l~~~~~~--~r~ 355 (1049)
.-.+..+...++. .++..|.+..=.|+ +........-+.+.+...+ .-|.....-+... .=.|. .+.
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~De----dL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg--~L~WSp~H~s 336 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDE----DLTDDLKFLTEELKNSVQDLSSFDEYKSELRSG--RLHWSPVHKS 336 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcH----HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcC--CccCCCCCCC
Confidence 0001112222222 12223322111111 1222111111111111110 0112222111111 00221 211
Q ss_pred HHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcHHHHhhhh--hHHHHHHHhccCCC
Q 001584 356 AAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHYE--SVLPCILNALEDES 432 (1049)
Q Consensus 356 ~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~ll~~l~~~l~~~~ 432 (1049)
...| - |+... +.++--+++..+...+. +.++.+-..||.=+|.++...+. .+..+. ..-..+++.+.+++
T Consensus 337 e~FW-~----EN~~k-f~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~-gr~i~~~lg~K~~vM~Lm~h~d 409 (429)
T cd00256 337 EKFW-R----ENADR-LNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPR-GKDVVEQLGGKQRVMRLLNHED 409 (429)
T ss_pred chHH-H----HHHHH-HHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCcc-HHHHHHHcCcHHHHHHHhcCCC
Confidence 1121 1 11111 11221345556666663 45677778899999999998742 222222 13455778889999
Q ss_pred hHHHHHHHHHHHHHH
Q 001584 433 DEVKEKSYYALAAFC 447 (1049)
Q Consensus 433 ~~v~~~a~~~l~~l~ 447 (1049)
++||..|+.|++.+.
T Consensus 410 ~~Vr~eAL~avQklm 424 (429)
T cd00256 410 PNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999875
No 161
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.18 E-value=0.6 Score=52.11 Aligned_cols=111 Identities=18% Similarity=0.170 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh--ccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhh
Q 001584 71 LSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAK--YAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTET 148 (1049)
Q Consensus 71 ~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~--~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~ 148 (1049)
...+..+.+...++++..+ ++..||...+++++.+.. ...+++-+..+...+..-+.+..+.+|..|+.+|..+-..
T Consensus 78 ~e~DlV~~~f~hlLRg~Es-kdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d 156 (892)
T KOG2025|consen 78 KEEDLVAGTFYHLLRGTES-KDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGD 156 (892)
T ss_pred chhhHHHHHHHHHHhcccC-cchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC
Confidence 4456777777788887775 899999999999999987 4455555677777777778888999999999999988643
Q ss_pred hhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHH
Q 001584 149 IGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGS 186 (1049)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~ 186 (1049)
-.+. --.+...+...++++++++||.+|+.++..
T Consensus 157 ~~de----e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 157 PKDE----ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred CCCC----cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 3221 123455566666766999999999987754
No 162
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.18 E-value=0.11 Score=56.36 Aligned_cols=253 Identities=21% Similarity=0.265 Sum_probs=136.4
Q ss_pred cchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhh
Q 001584 117 PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (1049)
Q Consensus 117 ~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~ 196 (1049)
+...+.+.+.+.+.+..+|..+...++.+- ....++.+.+.+.+ .++.||..|..+++.+-.
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d-~~~~vr~~a~~aLg~~~~------- 103 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSD-EDPRVRDAAADALGELGD------- 103 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcC-CCHHHHHHHHHHHHccCC-------
Confidence 356777778788777788887776644432 34566777788887 788888888886654322
Q ss_pred HHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhhhCCC----------CChHHH
Q 001584 197 VVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHN----------LEPNTR 266 (1049)
Q Consensus 197 ~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~----------~~~~~r 266 (1049)
...+|.++..+.. +.+..++..+...|..+..... +..++. ...+.. ....+|
T Consensus 104 ----~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a------~~~l~~----~l~~~~~~~a~~~~~~~~~~~r 166 (335)
T COG1413 104 ----PEAVPPLVELLEN---DENEGVRAAAARALGKLGDERA------LDPLLE----ALQDEDSGSAAAALDAALLDVR 166 (335)
T ss_pred ----hhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhh------hHHHHH----HhccchhhhhhhhccchHHHHH
Confidence 1223445554322 4666777777777776544221 112222 222211 011344
Q ss_pred HHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhh
Q 001584 267 HQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSC 346 (1049)
Q Consensus 267 ~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l 346 (1049)
..+.+.+..+... ...+.+...+.+... .+|..+...+..+.... ..+.+.+...+
T Consensus 167 ~~a~~~l~~~~~~------------~~~~~l~~~l~~~~~-------~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~ 222 (335)
T COG1413 167 AAAAEALGELGDP------------EAIPLLIELLEDEDA-------DVRRAAASALGQLGSEN-----VEAADLLVKAL 222 (335)
T ss_pred HHHHHHHHHcCCh------------hhhHHHHHHHhCchH-------HHHHHHHHHHHHhhcch-----hhHHHHHHHHh
Confidence 4444444433211 112222233322221 46666666666555322 23444555566
Q ss_pred cCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHH
Q 001584 347 QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILN 426 (1049)
Q Consensus 347 ~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~ 426 (1049)
.+++|..|..++.+++.+... .-.+.+...+.+.++.++..+..+++.+ ........+..
T Consensus 223 ~~~~~~vr~~~~~~l~~~~~~----------~~~~~l~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~ 282 (335)
T COG1413 223 SDESLEVRKAALLALGEIGDE----------EAVDALAKALEDEDVILALLAAAALGAL----------DLAEAALPLLL 282 (335)
T ss_pred cCCCHHHHHHHHHHhcccCcc----------hhHHHHHHHHhccchHHHHHHHHHhccc----------CchhhHHHHHH
Confidence 777788887777777666543 3344555566666666666655555411 11123344455
Q ss_pred hccCCChHHHHHHHHHHHHHHH
Q 001584 427 ALEDESDEVKEKSYYALAAFCE 448 (1049)
Q Consensus 427 ~l~~~~~~v~~~a~~~l~~l~~ 448 (1049)
.+.+....++..+..++..+..
T Consensus 283 ~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 283 LLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred HhhcchhhHHHHHHHHHHhhcc
Confidence 5566666677666666665543
No 163
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=97.17 E-value=0.54 Score=53.43 Aligned_cols=382 Identities=15% Similarity=0.191 Sum_probs=188.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHh----cCCCc---HHHHHHHHhcCC-ChhHHHHHHHHHHHhhhhhccCCCHHHHHHH
Q 001584 8 LLIQFLMPDNDARRQAEDQIKRLA----KDPQV---VPALVQHLRTAK-TPNVRQLAAVLLRKKITGHWAKLSPQLKQLV 79 (1049)
Q Consensus 8 ll~~~~s~d~~~r~~a~~~L~~~~----~~p~~---~~~l~~il~~~~-~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i 79 (1049)
+|..+-|++..+|++..+.+.++. .+|+. +..|++...++. +..+|.++.++++.-+ +.++++.+..+
T Consensus 28 lLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~----~Rl~~~e~~~l 103 (501)
T PF13001_consen 28 LLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGF----DRLDDEERREL 103 (501)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhh----hcCCHHHHHHH
Confidence 444456899999999999998764 34553 567888887665 7899999998886654 66788999999
Q ss_pred HHHHHHHHhhcCC--HHHHHHHHHHHHHHHhcc----CCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhh-------
Q 001584 80 KQSLIESITLEHS--APVRRASANVVSIIAKYA----VPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLT------- 146 (1049)
Q Consensus 80 ~~~ll~~l~~e~~--~~vr~~~~~~l~~i~~~~----~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~------- 146 (1049)
...+++.+.+-+. .......+..+-.+.+.. .| ..|.+..........=.+.......+.-+..+.
T Consensus 104 lP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~l~~~~~ 182 (501)
T PF13001_consen 104 LPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEP-PRGSKEDEKFRDSLGLSDFCDDVFLAPWFSKFLLLQPNRA 182 (501)
T ss_pred HHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccc-cccchhhhcHHHHHhhcchHHHHHcchhhccccccccccc
Confidence 9999999874111 122222222222222211 11 122221111111000000000000000000000
Q ss_pred -------hhhhhccc-----------------ccHH----HHHHHHHHhh--------------CCCCChHHHHHHHHHH
Q 001584 147 -------ETIGQTFR-----------------PHFA----DMQALLLKCL--------------QDETSNRVRIAALKAI 184 (1049)
Q Consensus 147 -------~~~~~~~~-----------------~~~~----~l~~~l~~~l--------------~~~~~~~vr~~a~~~l 184 (1049)
...++.+. ..+. .++.++..++ .| ++..|...|-..|
T Consensus 183 ~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~f~d~~~~~~~liAsad-~~~~V~~~ae~~L 261 (501)
T PF13001_consen 183 YACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGFFPDEERFPPLLIASAD-SNSSVSDRAEDLL 261 (501)
T ss_pred cCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcCCCcHhHHhheeeEEeC-CcchHHHHHHHHH
Confidence 00000000 0011 1222222222 22 4455666666666
Q ss_pred HHhhcccCChhhHHHHHhhhHHHHHHHH--HHh-----hcCCHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhhh
Q 001584 185 GSFLEFTNDGAEVVKFREFIPSILNVSR--QCL-----ASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSS 257 (1049)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~--~~l-----~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~ 257 (1049)
.++....+++ .++..++.... ... .-.++..+...+..|..-.. -...++++++.+...+.
T Consensus 262 Kr~~~~~ed~-------~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~-----Aa~~~~~~~~i~~~~l~ 329 (501)
T PF13001_consen 262 KRLSVSLEDP-------DLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI-----AATSFPNILQIVFDGLY 329 (501)
T ss_pred hhcCCCCCCH-------HHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH-----HHhCCccHHHHHhcccc
Confidence 6655444332 22223333221 000 01133344455555543111 01122344444443333
Q ss_pred CCCCChHHHHHHHHHH---HHHHhhhHhhhhhcCChHHHHHHHhhhhccCC-CCCCCCCCcHHHHHHHHHHHHHHHcchh
Q 001584 258 SHNLEPNTRHQAIQII---SWLAKYKYNSLKKHKLVIPILQVMCPLLAESN-EAGEDDDLAPDRAAAEVIDTMALNLAKH 333 (1049)
Q Consensus 258 ~~~~~~~~r~~a~~~l---~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~~~d~~~~~~~~a~~~l~~l~~~~~~~ 333 (1049)
........|..+++++ .+.....+....+ .+-+.++..+.+.+.... .....++...|..+-++++.++...+.-
T Consensus 330 ~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~-~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l 408 (501)
T PF13001_consen 330 SDNTNSKLKSLALQFIRGSSWIFKHISPQILK-LLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSL 408 (501)
T ss_pred CCccccccchhcchhhhcchHHhhhcCHHHHH-HHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccc
Confidence 3333567888899999 7776544332211 122233444455552111 1112234467889999999999988743
Q ss_pred ch--HHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHH---HhHHHHHH-HHHhhcCCCChhHHHHHHHHHHHhHh
Q 001584 334 VF--PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMK---EKLESVLH-IVLGALRDPEQFVRGAASFALGQFAE 407 (1049)
Q Consensus 334 ~~--~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~---~~l~~i~~-~l~~~l~d~~~~vr~~a~~~l~~l~~ 407 (1049)
+. -.++.++...+.++....|.+.-.+|+.++......-. ......+. .+.....+....+|.+|.+....+..
T Consensus 409 ~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~fp 488 (501)
T PF13001_consen 409 FSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANACFP 488 (501)
T ss_pred ccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCC
Confidence 31 34666666667777788888877788887765433211 11112222 33334446677788888877766544
Q ss_pred h
Q 001584 408 Y 408 (1049)
Q Consensus 408 ~ 408 (1049)
.
T Consensus 489 f 489 (501)
T PF13001_consen 489 F 489 (501)
T ss_pred c
Confidence 3
No 164
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.16 E-value=0.00068 Score=42.48 Aligned_cols=30 Identities=30% Similarity=0.670 Sum_probs=27.0
Q ss_pred hHHHHHHhcCCCChHhHHHHHHHHHHHHhh
Q 001584 867 VMPLVLKELASPDAMNRRNAAFCVGELCKN 896 (1049)
Q Consensus 867 i~~~l~~~l~~~~~~vr~~a~~~lg~l~~~ 896 (1049)
++|.+++.++|++++||.+|++++|.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999999999875
No 165
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.12 E-value=0.079 Score=61.25 Aligned_cols=213 Identities=17% Similarity=0.210 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHH-----------HHHHHHcc-hh
Q 001584 266 RHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVI-----------DTMALNLA-KH 333 (1049)
Q Consensus 266 r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l-----------~~l~~~~~-~~ 333 (1049)
|..|+.+|..+....|-.+. ..+...|++..+.+|..... +.+....-.. ..+.+..| +.
T Consensus 487 RlRAL~LL~RFLDlGpWAV~-LaLsVGIFPYVLKLLQS~a~-------ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~Y 558 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVD-LALSVGIFPYVLKLLQSSAR-------ELRPILVFIWAKILAVDPSCQADLVKENGYKY 558 (1387)
T ss_pred HHHHHHHHHHHhccchhhhh-hhhccchHHHHHHHhccchH-------hhhhhHHHHHHHHHhcCchhHHHHHhccCcee
Confidence 66788888877765543321 12334578888888766543 2222221111 22333333 11
Q ss_pred chHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhH-HHHHHHHHhhcCC-CChhHHHHHHHHHHHhHhhhcH
Q 001584 334 VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRD-PEQFVRGAASFALGQFAEYLQP 411 (1049)
Q Consensus 334 ~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~ 411 (1049)
++..+-+ -..-+.+.|.-|.+.|+.++.+.+-.-+..+ .+++...+..++| ++|..|.=++-|||++-+.+..
T Consensus 559 F~~vL~~-----~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~ 633 (1387)
T KOG1517|consen 559 FLQVLDP-----SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDE 633 (1387)
T ss_pred EEEEecC-----cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcch
Confidence 1111111 0122457888899999999998665444443 4678889999998 5899999999999999887753
Q ss_pred H-HHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccc----------------cchHHHHH----HHHHhhc
Q 001584 412 E-IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEIL----------------PFLDPLMG----KLLAALE 470 (1049)
Q Consensus 412 ~-~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~----------------~~~~~ll~----~l~~~l~ 470 (1049)
. +...-......|...|.|+.++||.+|+.||+.|+.+..+.+. --.+..+. .+...++
T Consensus 634 Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vs 713 (1387)
T KOG1517|consen 634 ARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVS 713 (1387)
T ss_pred hhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHh
Confidence 2 2222234566778889999999999999999999987421111 11222222 5566677
Q ss_pred CCCHhHHHHHHHHHHHHHHHh
Q 001584 471 NSPRNLQETCMSAIGSVAAAA 491 (1049)
Q Consensus 471 ~~~~~v~~~~~~~l~~l~~~~ 491 (1049)
+..+-+|.++..+++..+...
T Consensus 714 dgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 714 DGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred ccchHHHHHHHHHHHHHHHhh
Confidence 788888888888887766543
No 166
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.07 E-value=0.024 Score=61.39 Aligned_cols=186 Identities=21% Similarity=0.273 Sum_probs=121.3
Q ss_pred HHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhh
Q 001584 337 PVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH 416 (1049)
Q Consensus 337 ~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 416 (1049)
...+.+...+.+.++..|..+...++.+.. ...++.+...+.|+++.||..|..+||.+...
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~-------- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAAADALGELGDP-------- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh--------
Confidence 445566667788899999999888665543 36788999999999999999999988766533
Q ss_pred hhhHHHHHHHhcc-CCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCC------------HhHHHHHHHH
Q 001584 417 YESVLPCILNALE-DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSP------------RNLQETCMSA 483 (1049)
Q Consensus 417 ~~~ll~~l~~~l~-~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~------------~~v~~~~~~~ 483 (1049)
..++.++..+. +.+..||..+..+|..+-..-. +..+...+++.. ..+|..+...
T Consensus 105 --~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~ 172 (335)
T COG1413 105 --EAVPPLVELLENDENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA 172 (335)
T ss_pred --hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhhhhccchHHHHHHHHHHH
Confidence 25566666666 6889999999999987643211 222333333322 2466666666
Q ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCCCchhh
Q 001584 484 IGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELR 563 (1049)
Q Consensus 484 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r 563 (1049)
++.+.. +...+.+...+... ...+|..+...++.+.... ..+...+...++++++.+|
T Consensus 173 l~~~~~----------~~~~~~l~~~l~~~---~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr 230 (335)
T COG1413 173 LGELGD----------PEAIPLLIELLEDE---DADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVR 230 (335)
T ss_pred HHHcCC----------hhhhHHHHHHHhCc---hHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHH
Confidence 664432 12334445555433 2256777777777665322 3444555666778889999
Q ss_pred HHHHHHHHHHH
Q 001584 564 EYTHGFFSNIA 574 (1049)
Q Consensus 564 ~~~~~~l~~l~ 574 (1049)
..+...++.+-
T Consensus 231 ~~~~~~l~~~~ 241 (335)
T COG1413 231 KAALLALGEIG 241 (335)
T ss_pred HHHHHHhcccC
Confidence 88877776554
No 167
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.07 E-value=0.77 Score=51.29 Aligned_cols=216 Identities=17% Similarity=0.154 Sum_probs=127.4
Q ss_pred chhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHH
Q 001584 240 LLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAA 319 (1049)
Q Consensus 240 ~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a 319 (1049)
-|...+..++...+.+..++...+.+ ++|+..++...+..-....++.+++..++.-....+ ..+|...
T Consensus 37 ~F~eeflr~vn~il~vkKresi~dRI----l~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskd-------k~VRfrv 105 (892)
T KOG2025|consen 37 EFSEEFLRVVNYILLVKKRESIPDRI----LSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKD-------KKVRFRV 105 (892)
T ss_pred hhHHHHHHHHHHheeeccCCCcHHHH----HHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcc-------hhHHHHH
Confidence 34445556666666666655433333 444555544333222222355555555554443333 2788888
Q ss_pred HHHHHHHHHHcc---hhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhc-CCCChhHH
Q 001584 320 AEVIDTMALNLA---KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGAL-RDPEQFVR 395 (1049)
Q Consensus 320 ~~~l~~l~~~~~---~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l-~d~~~~vr 395 (1049)
...+..+....+ +.++..+...+..-+.+..+.+|.-|+.+|..+-+...+.-- .+...+...+ +||++.||
T Consensus 106 lqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~----~v~n~l~~liqnDpS~EVR 181 (892)
T KOG2025|consen 106 LQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC----PVVNLLKDLIQNDPSDEVR 181 (892)
T ss_pred HHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc----cHHHHHHHHHhcCCcHHHH
Confidence 888888887544 778888999888888999999999999999998753322111 2333333334 59999999
Q ss_pred HHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHh
Q 001584 396 GAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRN 475 (1049)
Q Consensus 396 ~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~ 475 (1049)
.+|+..+..= +..+|.++....|-+..+|.-+..-+-.=++....+ ...-+..+-..+.+.+..
T Consensus 182 RaaLsnI~vd------------nsTlp~IveRarDV~~anRrlvY~r~lpkid~r~ls----i~krv~LlewgLnDRe~s 245 (892)
T KOG2025|consen 182 RAALSNISVD------------NSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLS----IDKRVLLLEWGLNDREFS 245 (892)
T ss_pred HHHHHhhccC------------cccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhh----HHHHHHHHHHhhhhhhhH
Confidence 9997665321 125677777777776666654432221111111111 223344445566777777
Q ss_pred HHHHHHHHHHH
Q 001584 476 LQETCMSAIGS 486 (1049)
Q Consensus 476 v~~~~~~~l~~ 486 (1049)
++.++...|..
T Consensus 246 Vk~A~~d~il~ 256 (892)
T KOG2025|consen 246 VKGALVDAILS 256 (892)
T ss_pred HHHHHHHHHHH
Confidence 88777776653
No 168
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=97.04 E-value=0.0044 Score=57.43 Aligned_cols=150 Identities=14% Similarity=0.292 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhH
Q 001584 718 LDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDE 797 (1049)
Q Consensus 718 ~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1049)
.+.+++.+++.+..|.+.+++.++++.++-+ ++++|+.-+.. .... ++....+......+.
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGil------GALDP~~~k~~-------~~~~------~~~~~~~~~~~~~~~ 68 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGIL------GALDPYKHKSI-------QKSL------DSKSSENSNDESTDI 68 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc------cccCcHHHhcc-------cccC------Cccccccccccchhh
Confidence 4677888888888887788888888777654 45555543211 0000 000000000000111
Q ss_pred HHHHHHHhHHHHHHHHhCCChHHHHH-HHHHHHHHhhccCCCcccchhhhHhHHHHHhhcCCchhhcHhhhHHHHHHhcC
Q 001584 798 VIMDAVSDLLPAFAKSMGPHFAPIFA-KLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELA 876 (1049)
Q Consensus 798 ~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~ 876 (1049)
.+ .....+.....|+. -.+..+++.++++.-......++.++..+++..|..+.||+++++|.++..++
T Consensus 69 ~l----------~~~~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~ 138 (160)
T PF11865_consen 69 SL----------PMMGISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIR 138 (160)
T ss_pred HH----------hhccCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHH
Confidence 00 11112223334544 36677888888877666777899999999999999999999999999999999
Q ss_pred CCChHhHHHHHHHHHHHHhh
Q 001584 877 SPDAMNRRNAAFCVGELCKN 896 (1049)
Q Consensus 877 ~~~~~vr~~a~~~lg~l~~~ 896 (1049)
..+...|+...+-|+.++..
T Consensus 139 ~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 139 TCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred hCCHHHHHHHHHHHHHHHHH
Confidence 88889998888888887653
No 169
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.02 E-value=0.11 Score=57.88 Aligned_cols=273 Identities=14% Similarity=0.163 Sum_probs=133.6
Q ss_pred CCHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHH
Q 001584 218 GEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVM 297 (1049)
Q Consensus 218 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l 297 (1049)
++......+...+..+..+-|.+-...+. .++.++++. +..+|.+|+.-|..+++..+ .++..+.++|
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~Ai~----a~~DLcEDe--d~~iR~~aik~lp~~ck~~~------~~v~kvaDvL 101 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEEAIN----AQLDLCEDE--DVQIRKQAIKGLPQLCKDNP------EHVSKVADVL 101 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHHHHH----HHHHHHT-S--SHHHHHHHHHHGGGG--T--------T-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHH----HHHHHHhcc--cHHHHHHHHHhHHHHHHhHH------HHHhHHHHHH
Confidence 56677778888888888776665555544 444556554 78899999999888886533 3667788888
Q ss_pred hhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcCh-HHHH--H
Q 001584 298 CPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA-EWMK--E 374 (1049)
Q Consensus 298 ~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~-~~~~--~ 374 (1049)
.++|...+. ........+|..+...-++..+..++..+... .+.+...|+-++..|..-....+ +.+. .
T Consensus 102 ~QlL~tdd~-------~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~ 173 (556)
T PF05918_consen 102 VQLLQTDDP-------VELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQK 173 (556)
T ss_dssp HHHTT---H-------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---H
T ss_pred HHHHhcccH-------HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchH
Confidence 888875432 34556666776666666666666666555421 23456788887766644333222 2222 1
Q ss_pred hH-HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhc--cCC----ChHHHHHHHHHHHHHH
Q 001584 375 KL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNAL--EDE----SDEVKEKSYYALAAFC 447 (1049)
Q Consensus 375 ~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l--~~~----~~~v~~~a~~~l~~l~ 447 (1049)
.. .-++..+...|.|-...=-...+..|+.+-.+....-....+.+++.+.... ..+ ++..-.....|+..-+
T Consensus 174 E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Al 253 (556)
T PF05918_consen 174 EMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQAL 253 (556)
T ss_dssp HHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhh
Confidence 22 2345666677777332222233334443333111111122344555555332 211 2332233333333222
Q ss_pred Hhhcc--ccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhh-hccccHHHHHHHHHHHH
Q 001584 448 EDMGE--EILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ-AFIPYAERVLELLKIFM 510 (1049)
Q Consensus 448 ~~~~~--~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~l~~~l 510 (1049)
.-+.. .-.+++.-+...+++.+++-....+...+..++-++..++. +....++.++..|..++
T Consensus 254 p~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ym 319 (556)
T PF05918_consen 254 PFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYM 319 (556)
T ss_dssp GG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS
T ss_pred HHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhC
Confidence 22211 12345555555555555555667788888888877766652 22334444444444444
No 170
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.00 E-value=1.4 Score=52.91 Aligned_cols=180 Identities=18% Similarity=0.213 Sum_probs=111.2
Q ss_pred CCCcc--hHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccc-cHHHHHH---------HHHHhhCCCCChHHHHHHH
Q 001584 114 GEWPD--LLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRP-HFADMQA---------LLLKCLQDETSNRVRIAAL 181 (1049)
Q Consensus 114 ~~w~~--ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~-~~~~l~~---------~l~~~l~~~~~~~vr~~a~ 181 (1049)
.+||- ++..|...+.++.|+.|+++...+..+.+..+..+.. ....+.- .+-....++.-..||.+..
T Consensus 71 ~~w~f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~ca 150 (1549)
T KOG0392|consen 71 RQWPFLSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACA 150 (1549)
T ss_pred ccccHHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHH
Confidence 57854 6788888888999999999999999888776544321 1222221 1222222223346999999
Q ss_pred HHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhhhCCCC
Q 001584 182 KAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNL 261 (1049)
Q Consensus 182 ~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 261 (1049)
++|..+..... ...+...++.+.+++...+.+.+.+.+..+..........+...+..++++...-+++.
T Consensus 151 q~L~~~l~~~~--------~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds-- 220 (1549)
T KOG0392|consen 151 QALGAYLKHMD--------ESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDS-- 220 (1549)
T ss_pred HHHHHHHHhhh--------hHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc--
Confidence 99999988773 23344555555556666667777766666655444333444455556666666666554
Q ss_pred ChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCC
Q 001584 262 EPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESN 305 (1049)
Q Consensus 262 ~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~ 305 (1049)
++.+|..|..++..+....++... .-+..++..+...+.+.+
T Consensus 221 ~ddv~~~aa~~l~~~~s~~v~l~~--~~i~~lv~~l~~~l~~ld 262 (1549)
T KOG0392|consen 221 DDDVRSVAAQFLVPAPSIQVKLMV--QKIAKLVHTLWSFLLELD 262 (1549)
T ss_pred chHHHHHHHHHhhhhhHHHHhhhH--hHHHHHHHHHHHHHHHhh
Confidence 788999998888877655433221 133445566665555443
No 171
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.98 E-value=0.21 Score=54.34 Aligned_cols=242 Identities=13% Similarity=0.025 Sum_probs=134.7
Q ss_pred chHHHHHHhc-cCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhh
Q 001584 118 DLLPFLFQFS-QSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (1049)
Q Consensus 118 ~ll~~l~~~l-~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~ 196 (1049)
..++.+...+ .+++..++..+...+...- -+..+..+...+.+ .++.||..+.++|+.+-.
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~----------~~~~~~~L~~~L~d-~~~~vr~aaa~ALg~i~~------- 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQE----------DALDLRSVLAVLQA-GPEGLCAGIQAALGWLGG------- 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccC----------ChHHHHHHHHHhcC-CCHHHHHHHHHHHhcCCc-------
Confidence 3455555555 3444555444433332111 11235667777777 788899999888864221
Q ss_pred HHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHH
Q 001584 197 VVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWL 276 (1049)
Q Consensus 197 ~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l 276 (1049)
+.....+...+.+.++.++..++..+.... .. .. +.+...+++. +..+|..|+..+..+
T Consensus 116 --------~~a~~~L~~~L~~~~p~vR~aal~al~~r~---~~----~~----~~L~~~L~d~--d~~Vra~A~raLG~l 174 (410)
T TIGR02270 116 --------RQAEPWLEPLLAASEPPGRAIGLAALGAHR---HD----PG----PALEAALTHE--DALVRAAALRALGEL 174 (410)
T ss_pred --------hHHHHHHHHHhcCCChHHHHHHHHHHHhhc---cC----hH----HHHHHHhcCC--CHHHHHHHHHHHHhh
Confidence 122233333456677777777765555411 11 11 1222333333 788899988888776
Q ss_pred HhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhH
Q 001584 277 AKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREA 356 (1049)
Q Consensus 277 ~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~ 356 (1049)
... . .++.+...+.+.+. .+|..|...+..+.. ...+..+.. ......+..+..
T Consensus 175 ~~~--------~----a~~~L~~al~d~~~-------~VR~aA~~al~~lG~---~~A~~~l~~----~~~~~g~~~~~~ 228 (410)
T TIGR02270 175 PRR--------L----SESTLRLYLRDSDP-------EVRFAALEAGLLAGS---RLAWGVCRR----FQVLEGGPHRQR 228 (410)
T ss_pred ccc--------c----chHHHHHHHcCCCH-------HHHHHHHHHHHHcCC---HhHHHHHHH----HHhccCccHHHH
Confidence 521 1 12223333444333 678887777744432 223333332 223344444433
Q ss_pred HHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHH
Q 001584 357 AVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVK 436 (1049)
Q Consensus 357 al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~ 436 (1049)
+...++.. + -+..++.+...++|+. +|..+.+++|.+... ..++.|+..+.++. ++
T Consensus 229 l~~~lal~--~--------~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p----------~av~~L~~~l~d~~--~a 284 (410)
T TIGR02270 229 LLVLLAVA--G--------GPDAQAWLRELLQAAA--TRREALRAVGLVGDV----------EAAPWCLEAMREPP--WA 284 (410)
T ss_pred HHHHHHhC--C--------chhHHHHHHHHhcChh--hHHHHHHHHHHcCCc----------chHHHHHHHhcCcH--HH
Confidence 33333322 1 1266777888888865 899999999977553 26778888887763 88
Q ss_pred HHHHHHHHHHHH
Q 001584 437 EKSYYALAAFCE 448 (1049)
Q Consensus 437 ~~a~~~l~~l~~ 448 (1049)
..|..++..+..
T Consensus 285 R~A~eA~~~ItG 296 (410)
T TIGR02270 285 RLAGEAFSLITG 296 (410)
T ss_pred HHHHHHHHHhhC
Confidence 888888887753
No 172
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.97 E-value=0.096 Score=55.12 Aligned_cols=166 Identities=20% Similarity=0.171 Sum_probs=105.7
Q ss_pred HHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHh-----
Q 001584 341 FASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS----- 415 (1049)
Q Consensus 341 ~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~----- 415 (1049)
.+...+++.+...|+.|+.++|..+--..+.-.. -++.+...++..+..||..|++++..+....+....+
T Consensus 31 lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~ 106 (298)
T PF12719_consen 31 LILPAVQSSDPAVRELALKCLGLCCLLDKELAKE----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDN 106 (298)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhcc
Confidence 4456788899999999999999887654433333 3455555555458999999999999998877654322
Q ss_pred ----hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcC----CCHhHHHHHHHHHHHH
Q 001584 416 ----HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN----SPRNLQETCMSAIGSV 487 (1049)
Q Consensus 416 ----~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~----~~~~v~~~~~~~l~~l 487 (1049)
....++..+.+.+.+.++.+|..++.++..+.-.-. +.+ .+.++..|+-..-+ .+..+|.-.--++-..
T Consensus 107 ~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~--i~~-~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y 183 (298)
T PF12719_consen 107 DESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR--ISD-PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVY 183 (298)
T ss_pred CccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC--CCc-HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHH
Confidence 124678888888988899999999999988764321 111 34555555544333 2344554444444444
Q ss_pred HHHhhhhccccHHHHHHHHHHHHhcc
Q 001584 488 AAAAEQAFIPYAERVLELLKIFMVLT 513 (1049)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~l~~~l~~~ 513 (1049)
+......-....+.++|.+..+....
T Consensus 184 ~~s~~~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 184 ASSSPENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 44333222223344566666666543
No 173
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.89 E-value=1.1 Score=50.40 Aligned_cols=309 Identities=13% Similarity=0.150 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHH
Q 001584 133 EHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSR 212 (1049)
Q Consensus 133 ~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 212 (1049)
..|..++.-+...+..++ ...++.++......+..+...+.|.++++.+..++......... .+ -.++..+
T Consensus 5 ~~R~~a~~~l~~~i~~~~---~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~--~R---~~fF~~I- 75 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYP---LSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGL--MR---AEFFRDI- 75 (464)
T ss_pred HHHHHHHHHHHHHHHhCC---chHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHH--HH---HHHHHHH-
Confidence 445556655555555544 25566777777777776567789999999999999877531111 11 1112221
Q ss_pred HHhhcCCHHHHHHHHHHHHHHhccCCc---chhhhHHHHHHHHHHhh---------hC-------C-----CCChHHHHH
Q 001584 213 QCLASGEEDVAVIAFEIFDELIESPAP---LLGDSVKSIVHFSLEVS---------SS-------H-----NLEPNTRHQ 268 (1049)
Q Consensus 213 ~~l~~~~~~~~~~~~~~l~~l~~~~~~---~~~~~~~~l~~~l~~~~---------~~-------~-----~~~~~~r~~ 268 (1049)
.....++....-+++|..+.++..+ +.....+.+...+-... .. . +.+...-..
T Consensus 76 --~~~~~~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (464)
T PF11864_consen 76 --SDPSNDDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSD 153 (464)
T ss_pred --hcCCCchhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHH
Confidence 1223334444555555555544322 22223333333332222 00 0 012223344
Q ss_pred HHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHH--HcchhchHHHHHHHHhhh
Q 001584 269 AIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMAL--NLAKHVFPPVFEFASVSC 346 (1049)
Q Consensus 269 a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~--~~~~~~~~~ll~~l~~~l 346 (1049)
.+.++..++++......+ ..+..++..++.+....... ..-..+...++.+.. .+|.+.++.++..+....
T Consensus 154 ll~~l~nviKfn~~~l~e-~~i~~lv~~i~~iC~~Ts~~------~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~ 226 (464)
T PF11864_consen 154 LLQFLVNVIKFNFNYLDE-DEISSLVDQICTICKSTSSE------DDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIV 226 (464)
T ss_pred HHHHHHHHHhcCCCCCCH-HHHHHHHHHHHHHHhccCcH------HHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHh
Confidence 567777777654332222 24455666666664333321 123566777887765 455777777777776554
Q ss_pred cCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhc--C----CCChhHHHHHHHHHHHhHhhhcHHHHh--hhh
Q 001584 347 QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGAL--R----DPEQFVRGAASFALGQFAEYLQPEIVS--HYE 418 (1049)
Q Consensus 347 ~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l--~----d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~ 418 (1049)
... .....+-.++..++.... -...+..+...| . .++..+-..|...++.+.-..++.-.+ .+.
T Consensus 227 ~~~--~l~~~~w~~m~nL~~S~~------g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~ 298 (464)
T PF11864_consen 227 NSV--SLCKPSWRTMRNLLKSHL------GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFS 298 (464)
T ss_pred ccc--ccchhHHHHHHHHHcCcc------HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceeccc
Confidence 333 233344445666664311 112333444444 2 234566667888888776554221111 233
Q ss_pred h--HHHHHHHhccCCChHHHHHHHHHHHHHH-Hhhcccc-ccchHHHHHHHHH
Q 001584 419 S--VLPCILNALEDESDEVKEKSYYALAAFC-EDMGEEI-LPFLDPLMGKLLA 467 (1049)
Q Consensus 419 ~--ll~~l~~~l~~~~~~v~~~a~~~l~~l~-~~~~~~l-~~~~~~ll~~l~~ 467 (1049)
. +++.+...++..++.|-...+..+..++ +.++..+ ....+.++..+..
T Consensus 299 ~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~ 351 (464)
T PF11864_consen 299 PSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEE 351 (464)
T ss_pred HHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHH
Confidence 4 9999999999888888888888888888 6665443 3444455544443
No 174
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.87 E-value=0.57 Score=51.06 Aligned_cols=243 Identities=16% Similarity=0.099 Sum_probs=149.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccH
Q 001584 78 LVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF 157 (1049)
Q Consensus 78 ~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~ 157 (1049)
.....++..|..+.+..++..++..+. .. .-+..+..+.+.+.+.++.+|..+...|+.+- .
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~---~~-----~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~----------~ 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALL---AQ-----EDALDLRSVLAVLQAGPEGLCAGIQAALGWLG----------G 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHh---cc-----CChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC----------c
Confidence 345667777865567777664333332 11 11224788899999988889999988888653 3
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccC
Q 001584 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (1049)
Q Consensus 158 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~ 237 (1049)
+...+.+...+.+ .++.||..++.++...- .+. .+.+.. .+++.++.++..++.++..+-..
T Consensus 116 ~~a~~~L~~~L~~-~~p~vR~aal~al~~r~---~~~---------~~~L~~----~L~d~d~~Vra~A~raLG~l~~~- 177 (410)
T TIGR02270 116 RQAEPWLEPLLAA-SEPPGRAIGLAALGAHR---HDP---------GPALEA----ALTHEDALVRAAALRALGELPRR- 177 (410)
T ss_pred hHHHHHHHHHhcC-CChHHHHHHHHHHHhhc---cCh---------HHHHHH----HhcCCCHHHHHHHHHHHHhhccc-
Confidence 4556777788888 89999999987766511 111 123333 45678899999999999876532
Q ss_pred CcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHH
Q 001584 238 APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDR 317 (1049)
Q Consensus 238 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~ 317 (1049)
...+.+. .... +.++.+|..|+..+..+.. + ..+..+......... ..+.
T Consensus 178 -----~a~~~L~----~al~--d~~~~VR~aA~~al~~lG~--~----------~A~~~l~~~~~~~g~-------~~~~ 227 (410)
T TIGR02270 178 -----LSESTLR----LYLR--DSDPEVRFAALEAGLLAGS--R----------LAWGVCRRFQVLEGG-------PHRQ 227 (410)
T ss_pred -----cchHHHH----HHHc--CCCHHHHHHHHHHHHHcCC--H----------hHHHHHHHHHhccCc-------cHHH
Confidence 1122222 2233 3488999999887755532 1 112222222222111 1222
Q ss_pred HHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHH
Q 001584 318 AAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGA 397 (1049)
Q Consensus 318 ~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~ 397 (1049)
.+...+... +. +..++.+...++++. .|.+++.++|.+... ..++.++..+.|+. ++..
T Consensus 228 ~l~~~lal~----~~---~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p----------~av~~L~~~l~d~~--~aR~ 286 (410)
T TIGR02270 228 RLLVLLAVA----GG---PDAQAWLRELLQAAA--TRREALRAVGLVGDV----------EAAPWCLEAMREPP--WARL 286 (410)
T ss_pred HHHHHHHhC----Cc---hhHHHHHHHHhcChh--hHHHHHHHHHHcCCc----------chHHHHHHHhcCcH--HHHH
Confidence 222222111 21 245566666666654 899999999988753 45777888887764 8889
Q ss_pred HHHHHHHhHh
Q 001584 398 ASFALGQFAE 407 (1049)
Q Consensus 398 a~~~l~~l~~ 407 (1049)
|..+++.++.
T Consensus 287 A~eA~~~ItG 296 (410)
T TIGR02270 287 AGEAFSLITG 296 (410)
T ss_pred HHHHHHHhhC
Confidence 9999988865
No 175
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.072 Score=54.60 Aligned_cols=146 Identities=14% Similarity=0.146 Sum_probs=102.4
Q ss_pred cCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHHH
Q 001584 347 QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCIL 425 (1049)
Q Consensus 347 ~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~ 425 (1049)
.+.+...|+.|+.-|..+++.......-+--..+..++..+++++..+|..|.+++|..+..-+..-...+ ...++.|+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 34578899999999999998754332222113345555599999999999999999999998754322222 23677777
Q ss_pred HhccCC-ChHHHHHHHHHHHHHHHhhccccccchH-HHHHHHHHhhcC--CCHhHHHHHHHHHHHHHHHhh
Q 001584 426 NALEDE-SDEVKEKSYYALAAFCEDMGEEILPFLD-PLMGKLLAALEN--SPRNLQETCMSAIGSVAAAAE 492 (1049)
Q Consensus 426 ~~l~~~-~~~v~~~a~~~l~~l~~~~~~~l~~~~~-~ll~~l~~~l~~--~~~~v~~~~~~~l~~l~~~~~ 492 (1049)
..+... +..+|..|+.|+++++++.+.....++. .=+..|..++++ .+...+..++..++.+.....
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence 777643 4678899999999999987543222221 115667777877 567788889999998887654
No 176
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.028 Score=55.84 Aligned_cols=150 Identities=17% Similarity=0.218 Sum_probs=109.4
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccc
Q 001584 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPF 457 (1049)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~ 457 (1049)
..+...+..|.+.++.+...++..+.+++.+.++.+.+.+..++..+++.+++....|...||.+++.++..+.+.+..-
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677788889999999999999999998888888889999999999999999999999999999999988766555
Q ss_pred hHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhc
Q 001584 458 LDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVG 536 (1049)
Q Consensus 458 ~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~ 536 (1049)
++.++..|..--..++..+++.+-.++..+...... ..+++.|...+... ..+.|..+..|+......+|
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~---n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHS---NPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhh---chhhhhhhhccccccceecc
Confidence 566666655555556778999999999887764422 22344444444332 12455555555555444443
No 177
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=96.75 E-value=1.5 Score=49.85 Aligned_cols=175 Identities=16% Similarity=0.234 Sum_probs=112.1
Q ss_pred cHHHHHHHHHHHHHHHcc-hhchHHHHHHHH--hh-----hcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHh
Q 001584 314 APDRAAAEVIDTMALNLA-KHVFPPVFEFAS--VS-----CQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLG 385 (1049)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~-~~~~~~ll~~l~--~~-----l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~ 385 (1049)
++...|...++++...+. ..++..++.... .. ..-.++..|.--+ +.++.... -....+.++..+..
T Consensus 252 ~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL---~~L~kS~~--Aa~~~~~~~~i~~~ 326 (501)
T PF13001_consen 252 SVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKIL---SLLSKSVI--AATSFPNILQIVFD 326 (501)
T ss_pred hHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHH---HHHHHhHH--HHhCCccHHHHHhc
Confidence 567777778877776555 444444454433 10 0012344444333 33333210 11234678888888
Q ss_pred hcCCC--ChhHHHHHHHHH---HHhHhhhcHHHHh-hhhhHHHHHHHhcc--------CCChHHHHHHHHHHHHHHHhhc
Q 001584 386 ALRDP--EQFVRGAASFAL---GQFAEYLQPEIVS-HYESVLPCILNALE--------DESDEVKEKSYYALAAFCEDMG 451 (1049)
Q Consensus 386 ~l~d~--~~~vr~~a~~~l---~~l~~~~~~~~~~-~~~~ll~~l~~~l~--------~~~~~v~~~a~~~l~~l~~~~~ 451 (1049)
++.++ +.++|..++..+ ......+++.... .-+.+...+...++ ..+...|..+..+|+.++...+
T Consensus 327 ~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p 406 (501)
T PF13001_consen 327 GLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAP 406 (501)
T ss_pred cccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCc
Confidence 88877 789999999988 7777777654432 22334444555552 1245788999999999999887
Q ss_pred cccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhh
Q 001584 452 EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQA 494 (1049)
Q Consensus 452 ~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~ 494 (1049)
..+..- -.++..|+..+....+++|..+-+|+++++......
T Consensus 407 ~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~ 448 (501)
T PF13001_consen 407 SLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDL 448 (501)
T ss_pred cccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhcc
Confidence 654322 356677777778888999999999999999876543
No 178
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.68 E-value=0.021 Score=52.97 Aligned_cols=149 Identities=15% Similarity=0.221 Sum_probs=94.8
Q ss_pred chHHHHHHHHhhhcCC-ChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHH
Q 001584 334 VFPPVFEFASVSCQNA-SPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE 412 (1049)
Q Consensus 334 ~~~~ll~~l~~~l~~~-~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 412 (1049)
..|.+++.+.+.++.+ +|..|..++..+|.++.--+...+..... .+ -..-.+.+........ ......+.
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~-~~--~~~~~~~~~~~~~~~l-----~~~~~~~~ 78 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS-LD--SKSSENSNDESTDISL-----PMMGISPS 78 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc-CC--ccccccccccchhhHH-----hhccCCCc
Confidence 3577888887777654 69999999999999986544322211000 00 0000111112222211 11111112
Q ss_pred HHhhh-hhHHHHHHHhccCCCh-HHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHH
Q 001584 413 IVSHY-ESVLPCILNALEDESD-EVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAA 490 (1049)
Q Consensus 413 ~~~~~-~~ll~~l~~~l~~~~~-~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~ 490 (1049)
..+++ .-.+..|++.|+|++- .-...++.++..+++..+....||++.+++.++..++..+...++..+.-++.+...
T Consensus 79 ~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 79 SEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 22333 3467888888888863 344678899999998887777999999999999999987778899888888877654
No 179
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=2.1 Score=50.06 Aligned_cols=114 Identities=14% Similarity=0.142 Sum_probs=74.2
Q ss_pred HHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccc-cc----cchHHHHHHHHHhhcC
Q 001584 397 AASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE-IL----PFLDPLMGKLLAALEN 471 (1049)
Q Consensus 397 ~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~-l~----~~~~~ll~~l~~~l~~ 471 (1049)
.+...+|.++...+..+.+.+-..+-.++..+.++++.+...|..|+..++..++-. .. ...+-++..+...++.
T Consensus 567 i~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~ 646 (1014)
T KOG4524|consen 567 IVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNT 646 (1014)
T ss_pred hhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhcc
Confidence 345667888888888888777666677777888888999999999999999988532 22 2223344444444432
Q ss_pred CCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhc
Q 001584 472 SPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVL 512 (1049)
Q Consensus 472 ~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 512 (1049)
. .+..++-..+..++...+....|+++.++..+...+..
T Consensus 647 ~--~~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~ 685 (1014)
T KOG4524|consen 647 S--GMSPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDY 685 (1014)
T ss_pred C--CCCchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHH
Confidence 1 12223344455556666666677888777777776643
No 180
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.61 E-value=0.025 Score=53.10 Aligned_cols=143 Identities=23% Similarity=0.290 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHhccCCC---CCCcchHHHH------------HHhccCCCHHHHHHHHHHHHHhhhhhhhc------
Q 001584 94 PVRRASANVVSIIAKYAVPA---GEWPDLLPFL------------FQFSQSEQEEHREVALILFSSLTETIGQT------ 152 (1049)
Q Consensus 94 ~vr~~~~~~l~~i~~~~~~~---~~w~~ll~~l------------~~~l~~~~~~~~~~al~~l~~l~~~~~~~------ 152 (1049)
.||..+..++..+++...+. +.|+.++|.- .-.+.++++.+|..|+.++..+.+.....
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 37888999999998863232 6788877754 22345778899999999999988664321
Q ss_pred -------ccc-------cHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcC
Q 001584 153 -------FRP-------HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASG 218 (1049)
Q Consensus 153 -------~~~-------~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~ 218 (1049)
|.+ .+-++...+...+..+.+..+-...++|+..++...+-. .- -.++++.++..+...+.+.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~--rL-~~~ll~~~v~~v~~~l~~~ 157 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYH--RL-PPGLLTEVVTQVRPLLRHR 157 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChh--hc-CHhHHHHHHHHHHHHHhcC
Confidence 211 123345666777776678888889999999998876521 11 1578888999888888888
Q ss_pred CHHHHHHHHHHHHHHhccCCc
Q 001584 219 EEDVAVIAFEIFDELIESPAP 239 (1049)
Q Consensus 219 ~~~~~~~~~~~l~~l~~~~~~ 239 (1049)
|.+++..++.++..+....+.
T Consensus 158 d~~v~v~~l~~~~~l~s~~~~ 178 (182)
T PF13251_consen 158 DPNVRVAALSCLGALLSVQPP 178 (182)
T ss_pred CCcHHHHHHHHHHHHHcCCCC
Confidence 999999999888888765443
No 181
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=96.61 E-value=0.66 Score=51.37 Aligned_cols=306 Identities=18% Similarity=0.164 Sum_probs=152.2
Q ss_pred hhHHhHHHHHHHHHhhcChHHHHHhHHHHHH-HHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhh-hhhHHHHHHHhc
Q 001584 351 PKYREAAVTAIGIISEGCAEWMKEKLESVLH-IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH-YESVLPCILNAL 428 (1049)
Q Consensus 351 ~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~ll~~l~~~l 428 (1049)
++.|.+|..+||.++...+. +.+..++. .+..+|++++..-|..|.-.+..++.......... .+.+.+.|...|
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~---~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPE---SSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 57899999999999887543 23445565 68899999999999999999999888765321111 245666666666
Q ss_pred cCCC-----------hHHHHHHHHHHHHHHHhhc--cccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhc
Q 001584 429 EDES-----------DEVKEKSYYALAAFCEDMG--EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAF 495 (1049)
Q Consensus 429 ~~~~-----------~~v~~~a~~~l~~l~~~~~--~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~ 495 (1049)
.++. .++|..+-..+..|.+.-. ..-.|.++.+++.--.. .+..---..+....+.........+
T Consensus 178 ~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~--~p~~fsi~~A~~v~~~~~~~l~~~l 255 (441)
T PF12054_consen 178 ENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEA--GPEAFSIEQAEKVVGEDFEKLKKSL 255 (441)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhcccccccccccccc--CCccCCHHHHHHHHHHHHHHHHHhc
Confidence 6432 2455556565655554321 11112222111100000 0000011122222222211111111
Q ss_pred cc--------cH----HHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCCCchhh
Q 001584 496 IP--------YA----ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELR 563 (1049)
Q Consensus 496 ~~--------~~----~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r 563 (1049)
.+ -+ ..++..+..+-... .....|..|..+-..++...=++++.|.+.++|+.+-+ .++..++
T Consensus 256 ~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~--~~~~~~V~Aa~A~A~v~l~~lP~KLnPiIrpLMdSIK~---Een~~LQ 330 (441)
T PF12054_consen 256 SPSQKLSALQALEDRRQRLQAAIEEAKEVQ--TSRDVRVLAAAASALVALGGLPKKLNPIIRPLMDSIKR---EENELLQ 330 (441)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHhhc---cccHHHH
Confidence 11 00 11111111111111 11112222222222222111156677777777765432 4567899
Q ss_pred HHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCC--CCchhhhccCCCC---CC-Ccchhhcccccceee
Q 001584 564 EYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDID--GSDDENINGFGGV---SS-DDEAHCERSVRNISV 637 (1049)
Q Consensus 564 ~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~i 637 (1049)
..+..+++.+...+-..-..--++|+..|+..+..|+..+.... ....+.+-.+... .+ .+....+...+
T Consensus 331 ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k~~~~~~~~~~~~~~~~~~---- 406 (441)
T PF12054_consen 331 QRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRKEEDKADHADAASEEREQK---- 406 (441)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhhhcccccccccccchhhhh----
Confidence 99999999999988855555578999999999987765433221 1111111000000 00 00000000000
Q ss_pred eccchhhHHHHHHHHHHHHHHhhhhchhhHHHHHH
Q 001584 638 RTGVLDEKAAATQALGLFALHTKSSYAPFLEESLK 672 (1049)
Q Consensus 638 ~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~ 672 (1049)
... -.|.+|..+|..++...|..+..-++.+++
T Consensus 407 -~a~-I~RrGA~~aL~~l~~~FG~~Lf~~lP~Lw~ 439 (441)
T PF12054_consen 407 -EAR-IQRRGAELALEQLAKRFGSSLFEKLPKLWE 439 (441)
T ss_pred -hhH-HHhcCHHHHHHHHHHHHhHHHHHhhhHHHh
Confidence 000 146678889999998888877766666554
No 182
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.039 Score=61.18 Aligned_cols=158 Identities=16% Similarity=0.202 Sum_probs=109.5
Q ss_pred HHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh
Q 001584 338 VFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY 417 (1049)
Q Consensus 338 ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 417 (1049)
.=+.|.+++.+.++-.|.+++++++.---|.+.. ..+.++++. ..+|++..||.+|.-+||-++..-+
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn--kair~lLh~---aVsD~nDDVrRaAVialGFVl~~dp------- 587 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN--KAIRRLLHV---AVSDVNDDVRRAAVIALGFVLFRDP------- 587 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch--hhHHHhhcc---cccccchHHHHHHHHHheeeEecCh-------
Confidence 3456667778888889988888765543333221 112223322 3578999999999999997665432
Q ss_pred hhHHHHHHHhccCC-ChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhcc
Q 001584 418 ESVLPCILNALEDE-SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFI 496 (1049)
Q Consensus 418 ~~ll~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~ 496 (1049)
..+|..++.|.++ ++.||..++-+|+-.|...+. ..-+..|-.+..++..-||..|+-+++-+.--..+...
T Consensus 588 -~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~ 660 (929)
T KOG2062|consen 588 -EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL------KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLC 660 (929)
T ss_pred -hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccC
Confidence 2556666666654 789999999999988877653 23344455556677788999999999888766667777
Q ss_pred ccHHHHHHHHHHHHhccC
Q 001584 497 PYAERVLELLKIFMVLTN 514 (1049)
Q Consensus 497 ~~~~~~~~~l~~~l~~~~ 514 (1049)
|-+..+...+.+.+....
T Consensus 661 pkv~~frk~l~kvI~dKh 678 (929)
T KOG2062|consen 661 PKVNGFRKQLEKVINDKH 678 (929)
T ss_pred chHHHHHHHHHHHhhhhh
Confidence 878888888888876553
No 183
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=3.3 Score=51.17 Aligned_cols=170 Identities=15% Similarity=0.140 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHcc-hhchHHHHHHHHhh-hcCCChhHHhHHHHHHHHHhhcCh-HHHHHhHHHHHHHHHhhcCCCCh
Q 001584 316 DRAAAEVIDTMALNLA-KHVFPPVFEFASVS-CQNASPKYREAAVTAIGIISEGCA-EWMKEKLESVLHIVLGALRDPEQ 392 (1049)
Q Consensus 316 ~~~a~~~l~~l~~~~~-~~~~~~ll~~l~~~-l~~~~~~~r~~al~~l~~i~~~~~-~~~~~~l~~i~~~l~~~l~d~~~ 392 (1049)
...+..+.+..+.... ....+.++..+... ..+..|+.|.+.+..+....-... -....+.++|-..+...++|.+.
T Consensus 1504 ~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i 1583 (1710)
T KOG1851|consen 1504 KNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQI 1583 (1710)
T ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHH
Confidence 3445556666655544 55667777777643 455689999998877766544321 12344567888899999999989
Q ss_pred hHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCC-ChHHH-HHHHHHHHHHHHhhccccccchHHHHHHHHHhhc
Q 001584 393 FVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE-SDEVK-EKSYYALAAFCEDMGEEILPFLDPLMGKLLAALE 470 (1049)
Q Consensus 393 ~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~v~-~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~ 470 (1049)
.||..|..+|.-+...-.-.+.+ +.-.......+.. ...++ ..|+-+|+.++-.+|-.+..+++..+..+....+
T Consensus 1584 ~vre~Aa~~Lsgl~~~s~~~~~~---~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~ 1660 (1710)
T KOG1851|consen 1584 EVREEAAKCLSGLLQGSKFQFVS---DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFAR 1660 (1710)
T ss_pred HHHHHHHHHHHHHHhccccccch---HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcC
Confidence 99999999998886654322211 1111222222222 23344 5688999999988887776677777776665544
Q ss_pred CCCHhHHHHHHHHHHHHHH
Q 001584 471 NSPRNLQETCMSAIGSVAA 489 (1049)
Q Consensus 471 ~~~~~v~~~~~~~l~~l~~ 489 (1049)
++ ..++..+-.+++..-.
T Consensus 1661 e~-~~i~~tvkktvseFrr 1678 (1710)
T KOG1851|consen 1661 ES-AAIKQTVKKTVSEFRR 1678 (1710)
T ss_pred Cc-hHHHHHHHHHHHHHHH
Confidence 43 5556666555554433
No 184
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=96.54 E-value=1.6 Score=47.47 Aligned_cols=273 Identities=11% Similarity=0.104 Sum_probs=147.6
Q ss_pred CChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhc-------CCHHHHHHHHHHHHHHhccC--Ccchh
Q 001584 172 TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLAS-------GEEDVAVIAFEIFDELIESP--APLLG 242 (1049)
Q Consensus 172 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~-------~~~~~~~~~~~~l~~l~~~~--~~~~~ 242 (1049)
.+..-|..|-..|.+.....+..+........++.+++.+.+=+.. .+......|++++..++-+. ...+.
T Consensus 5 ~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~ 84 (372)
T PF12231_consen 5 SDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLS 84 (372)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCC
Confidence 3445566666667666655544344555667777777777655543 24456678888888776432 11111
Q ss_pred h-hHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHH
Q 001584 243 D-SVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAE 321 (1049)
Q Consensus 243 ~-~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~ 321 (1049)
. ...-++...+..+.++..+..+....+.++..- +..++.+. .... ..
T Consensus 85 ~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q-~f~~~~~~-~~~~-----------------------------~~ 133 (372)
T PF12231_consen 85 DDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQ-KFSPKIMT-SDRV-----------------------------ER 133 (372)
T ss_pred hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CCCCcccc-hhhH-----------------------------HH
Confidence 1 112244444445544444433333333222210 00000000 0000 00
Q ss_pred HHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHH
Q 001584 322 VIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFA 401 (1049)
Q Consensus 322 ~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~ 401 (1049)
.+ ..+..+.+.+.+. ..-...+.++..+....+..+..+...-++.++..+-+....+|..|..+
T Consensus 134 l~-------------~~l~~i~~~~~s~--si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l 198 (372)
T PF12231_consen 134 LL-------------AALHNIKNRFPSK--SIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISL 198 (372)
T ss_pred HH-------------HHHHHhhccCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 00 1111111112221 23334566677778888888888888888888888888888899988777
Q ss_pred HHHhHhhhcHHH--Hh--------------hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhcc---ccccchHHHH
Q 001584 402 LGQFAEYLQPEI--VS--------------HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE---EILPFLDPLM 462 (1049)
Q Consensus 402 l~~l~~~~~~~~--~~--------------~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~---~l~~~~~~ll 462 (1049)
+..+...++++. .. +.+.+.+.+.+.+.++... ..+......++.-++. .-.+++...+
T Consensus 199 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~--~~a~~iW~~~i~LL~~~~~~~w~~~n~wL 276 (372)
T PF12231_consen 199 LLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEY--KLAMQIWSVVILLLGSSRLDSWEHLNEWL 276 (372)
T ss_pred HHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCc--chHHHHHHHHHHHhCCchhhccHhHhHHH
Confidence 766665554321 11 1112223333333442211 1223333333333332 2347888999
Q ss_pred HHHHHhhcCCCHhHHHHHHHHHHHHHHHhh
Q 001584 463 GKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (1049)
Q Consensus 463 ~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~ 492 (1049)
.....+++++++.+|..|+.+|..++....
T Consensus 277 ~v~e~cFn~~d~~~k~~A~~aW~~liy~~~ 306 (372)
T PF12231_consen 277 KVPEKCFNSSDPQVKIQAFKAWRRLIYASN 306 (372)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhc
Confidence 999899999999999999999999998554
No 185
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.52 E-value=0.13 Score=54.22 Aligned_cols=127 Identities=23% Similarity=0.240 Sum_probs=90.4
Q ss_pred HHHHHhhcChHHHHH--hHHHHHH-HHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHH
Q 001584 360 AIGIISEGCAEWMKE--KLESVLH-IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVK 436 (1049)
Q Consensus 360 ~l~~i~~~~~~~~~~--~l~~i~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~ 436 (1049)
..+.+.+.....+.+ .+..++. .+.+++.++++.||..|..|+|-++-.-..... +.++.+...++.....|+
T Consensus 6 i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~----~~l~l~~~~~~~~~~~v~ 81 (298)
T PF12719_consen 6 ITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK----EHLPLFLQALQKDDEEVK 81 (298)
T ss_pred HHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH----HHHHHHHHHHHhCCHHHH
Confidence 344444444333333 3457775 455899999999999999999988876543223 345555555655578999
Q ss_pred HHHHHHHHHHHHhhcccc-cc--------chHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHH
Q 001584 437 EKSYYALAAFCEDMGEEI-LP--------FLDPLMGKLLAALENSPRNLQETCMSAIGSVAAA 490 (1049)
Q Consensus 437 ~~a~~~l~~l~~~~~~~l-~~--------~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~ 490 (1049)
..|+.++..++-.++... .. ....++..+...+.+.+++++..+.++++.+.-.
T Consensus 82 ~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 82 ITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 999999999998776432 21 2347888888889888999999999999987654
No 186
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=96.52 E-value=0.23 Score=51.62 Aligned_cols=164 Identities=15% Similarity=0.191 Sum_probs=112.3
Q ss_pred ChhHHhHHH-HHHHHHhh-c-ChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHH----Hh--hhhhH
Q 001584 350 SPKYREAAV-TAIGIISE-G-CAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI----VS--HYESV 420 (1049)
Q Consensus 350 ~~~~r~~al-~~l~~i~~-~-~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~--~~~~l 420 (1049)
.|+...+.. ..+..+.. . ....+..+..-++|.++..+.|.++.+|..++.++..+....++.. .+ ..+-+
T Consensus 88 ~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~ 167 (282)
T PF10521_consen 88 PWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVF 167 (282)
T ss_pred CcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHH
Confidence 576554222 34444433 3 3456778899999999999999999999999999999998776533 22 22334
Q ss_pred HHHHHHhcc--------CCChHHHHHHHHHHHHHHHhhc-cccccc---hHHH-HHHHHHhhcC----CCHhHHHHHHHH
Q 001584 421 LPCILNALE--------DESDEVKEKSYYALAAFCEDMG-EEILPF---LDPL-MGKLLAALEN----SPRNLQETCMSA 483 (1049)
Q Consensus 421 l~~l~~~l~--------~~~~~v~~~a~~~l~~l~~~~~-~~l~~~---~~~l-l~~l~~~l~~----~~~~v~~~~~~~ 483 (1049)
-+.+...+. +.+..+-..+..++..++.... +.-.++ +..+ .+.+++.+.. ....++...++.
T Consensus 168 ~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~ 247 (282)
T PF10521_consen 168 EDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQ 247 (282)
T ss_pred HHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHH
Confidence 444444444 3445667788888888876542 111122 2222 2334444432 247899999999
Q ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHhcc
Q 001584 484 IGSVAAAAEQAFIPYAERVLELLKIFMVLT 513 (1049)
Q Consensus 484 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 513 (1049)
+..+...+|.....|++++++.+.+++.+.
T Consensus 248 l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 248 LPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999988654
No 187
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.34 Score=53.70 Aligned_cols=178 Identities=16% Similarity=0.200 Sum_probs=124.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHHh--cCCCc--------HH---HHHHHHhcCCChhHHHHHHHHHHHhhhhhccCCCHHHH
Q 001584 10 IQFLMPDNDARRQAEDQIKRLA--KDPQV--------VP---ALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLK 76 (1049)
Q Consensus 10 ~~~~s~d~~~r~~a~~~L~~~~--~~p~~--------~~---~l~~il~~~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~ 76 (1049)
+++..+|-++|..|..-+-+++ .+|+. +. .++.-+-.++-+.+|..|...+.+.+...|..+++.+.
T Consensus 181 R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~ 260 (1005)
T KOG1949|consen 181 RGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTIL 260 (1005)
T ss_pred HhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 4455678899999988887765 45654 11 12222334778999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 001584 77 QLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPH 156 (1049)
Q Consensus 77 ~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~ 156 (1049)
..+...+...+..|+...||-..-..+..++..-...+....++|.+--.+.+....+|.+.+.++..+-....-.
T Consensus 261 ~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~---- 336 (1005)
T KOG1949|consen 261 IDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAK---- 336 (1005)
T ss_pred HHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhh----
Confidence 9999999999998888899999988888887643333455667787777888888899999998888775443311
Q ss_pred HHHH--HHHHHHhhCCCCChHHHHHHHHHHHHhhccc
Q 001584 157 FADM--QALLLKCLQDETSNRVRIAALKAIGSFLEFT 191 (1049)
Q Consensus 157 ~~~l--~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~ 191 (1049)
+..+ +..+...|..++.+.-|..+.-.+..+....
T Consensus 337 f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~ 373 (1005)
T KOG1949|consen 337 FWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVN 373 (1005)
T ss_pred hhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCC
Confidence 2222 2334444444244444555554444444443
No 188
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.37 E-value=0.048 Score=46.52 Aligned_cols=98 Identities=19% Similarity=0.330 Sum_probs=75.5
Q ss_pred HHHHhHHHHHHHHHhhcCC----CChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHH
Q 001584 371 WMKEKLESVLHIVLGALRD----PEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAF 446 (1049)
Q Consensus 371 ~~~~~l~~i~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l 446 (1049)
.+.+++-.++..+-..+.| ....-|..++.+++.+.+..++.+....++++..|...+..+ .++..+++++..|
T Consensus 4 fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~f 81 (107)
T PF08064_consen 4 FLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCF 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHH
Confidence 4455655666666666666 455678899999999999777777777777877777777665 7999999999999
Q ss_pred HHhhc-cccccchHHHHHHHHHhhc
Q 001584 447 CEDMG-EEILPFLDPLMGKLLAALE 470 (1049)
Q Consensus 447 ~~~~~-~~l~~~~~~ll~~l~~~l~ 470 (1049)
+..++ +++.|+++.++..+.+.++
T Consensus 82 i~~L~~~~l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 82 IKTLDEEDLGPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHhcc
Confidence 99995 5677888888887776653
No 189
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.77 Score=47.35 Aligned_cols=147 Identities=20% Similarity=0.175 Sum_probs=100.0
Q ss_pred CCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHH
Q 001584 129 SEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSIL 208 (1049)
Q Consensus 129 ~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll 208 (1049)
+.+.+-++.++.-|..+++.+.....-+--..+..+..++++ ++..+|..|++.++.++..-+...+...-.+.++.++
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~-~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLEN-SDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcC-CcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 456788999999999999887743222222233444458888 9999999999999999987653322222234556666
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHH-HHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhh
Q 001584 209 NVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKY 279 (1049)
Q Consensus 209 ~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~ 279 (1049)
..+. .+.+..++..++-++..++.+.++-....+. .=...+..++++++.+...++.++.++..+.+.
T Consensus 173 ~~ls---~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 173 KILS---SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred HHHc---cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 6542 3455667789999999999887765444332 124445567777666788888888888888754
No 190
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.076 Score=55.21 Aligned_cols=132 Identities=21% Similarity=0.279 Sum_probs=111.9
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh-ccccccch
Q 001584 380 LHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM-GEEILPFL 458 (1049)
Q Consensus 380 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~-~~~l~~~~ 458 (1049)
+.-++..+.+.+..||..|...+..+....+.....++..+++.+.....|.+..||......+..++... +..+.|++
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 44566678899999999999999999888655566678889999999999999999999999999977655 45578999
Q ss_pred HHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHh
Q 001584 459 DPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMV 511 (1049)
Q Consensus 459 ~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~ 511 (1049)
.-+++.+...+.+..+.+|..++..+..++...++.+..+...+++.+...+.
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~ 192 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVIS 192 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988887777666666666554
No 191
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=4.7 Score=49.96 Aligned_cols=220 Identities=16% Similarity=0.180 Sum_probs=115.3
Q ss_pred hHHHHHHHHhCC-ChHHHHHHHHHHHHHhhccC--CCcccchhhhH-hHHHHHhhcCCchhhcHhhhHHHHHHhcCCCCh
Q 001584 805 DLLPAFAKSMGP-HFAPIFAKLFDPLMKFAKSS--RPLQDRTMVVA-TLAEVARDMGSPIAAYVDRVMPLVLKELASPDA 880 (1049)
Q Consensus 805 ~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~--~~~~~r~~a~~-~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 880 (1049)
++.-.+...+.+ .|.|.|..++.+-...+... .....|..++. ....+.+.+..-+.||...++......|...+.
T Consensus 1371 ~~~v~~v~klse~~FRplf~~l~~WA~~~~~~~a~~~~~~Rli~fy~f~~~l~esl~si~~pYf~~~l~~~~~~L~k~n~ 1450 (1621)
T KOG1837|consen 1371 NKAVAKVLKLSESTFRPLFSPLFDWAEPGLEAKAEQKCLERLISFYHFADYLQESLKSIVTPYFGYLLEPRVILLKKINA 1450 (1621)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Confidence 333444444433 56666666555433332211 11122333332 333345555555778888877766555542221
Q ss_pred H------------hH------HHHHHHHHHHHhhcC-cchh------hHHHHHHHhhhhhhCCCCCChhHHhhHHHHHHH
Q 001584 881 M------------NR------RNAAFCVGELCKNGG-ESAL------KYYGDILRGLYPLFGDSEPDDAVRDNAAGAVAR 935 (1049)
Q Consensus 881 ~------------vr------~~a~~~lg~l~~~~~-~~~~------~~~~~~l~~L~~~l~~~~~~~~~~~~a~~~l~~ 935 (1049)
. .| .-+..|+-.+..+.. ..|. -....++..+.+..-.....+.+.+.++.++++
T Consensus 1451 s~~~~~~~~~~~~~r~~~~~~~Lvl~cl~~~~~~Dt~~~f~t~~r~~~~~~p~v~ql~n~~~e~~~~~~v~~~li~~i~~ 1530 (1621)
T KOG1837|consen 1451 SKHRWFWLLPVNQSRKPLLLGTLVLNCLKDLFLFDTIESFVTKSRFELLSYPLVSQLVNVLLEFYASDIVSKLLIAEIAS 1530 (1621)
T ss_pred hhhhhhhhhcccccchhHHHHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhhHHHHHHhhccchhhhHHHHHHHHHHHh
Confidence 1 12 123333333333332 1110 001112222222111122345678888888888
Q ss_pred HHHhCCCCCChhhHHHHHHhhCCCCCc-HHhhHHHHHHHHHHHhhCChhhcchhhHHHHHHHHHhcCCCCChHHHHHHHH
Q 001584 936 MIMVNPQSIPLNQVLPVLLKVLPLKED-FEESMAVYNCISTLVLSSNPQILSLVPELVNLFAEVVVSPEESSEVKSQVGM 1014 (1049)
Q Consensus 936 i~~~~~~~~~~~~~l~~~l~~lp~~~d-~~e~~~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 1014 (1049)
+....++. +..++...+... +.+ ......+...+..++..-+..+...+|++++++++.+.+ +++++-..+..
T Consensus 1531 ~~~a~~~d--~~pl~~k~l~~t--rss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED--~~~~Ve~~~q~ 1604 (1621)
T KOG1837|consen 1531 DSVADKDD--LKPLNQKILKKT--RSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMED--EDDEVECLCQK 1604 (1621)
T ss_pred hccCChhh--hHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhh--hHHHHHHHHHH
Confidence 77665554 233333333332 211 123334555566666666777889999999999999876 56677777888
Q ss_pred HHHHHHHHhhhhHHHH
Q 001584 1015 AFSHLISLYGQQMQPL 1030 (1049)
Q Consensus 1015 ~l~~l~~~~~~~~~~~ 1030 (1049)
+++++...+|..++++
T Consensus 1605 li~q~e~~lGE~l~~y 1620 (1621)
T KOG1837|consen 1605 LIRQLEEVLGEPLQSY 1620 (1621)
T ss_pred HHHHHHHHhchhhhhc
Confidence 8888888888766653
No 192
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=96.26 E-value=0.058 Score=45.53 Aligned_cols=98 Identities=19% Similarity=0.375 Sum_probs=75.7
Q ss_pred HHHHHhHHHHHHHHHhhcCCCC--h--hHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHH
Q 001584 370 EWMKEKLESVLHIVLGALRDPE--Q--FVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAA 445 (1049)
Q Consensus 370 ~~~~~~l~~i~~~l~~~l~d~~--~--~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~ 445 (1049)
+.+.+++-.++..+...+.|++ . .-|..++.+++.+.+..++.+....++++..|..++..+ +.|..|+.++..
T Consensus 3 ~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~--eL~~~al~~W~~ 80 (107)
T smart00802 3 DFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP--ELRSLALRCWHV 80 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHH
Confidence 3456676677888888888765 2 348899999999999888878888888888888888754 699999999999
Q ss_pred HHHhhc-cccccchHHHHHHHHHhh
Q 001584 446 FCEDMG-EEILPFLDPLMGKLLAAL 469 (1049)
Q Consensus 446 l~~~~~-~~l~~~~~~ll~~l~~~l 469 (1049)
++..++ +++.|.++.++..+.+.+
T Consensus 81 ~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 81 LIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 999985 456666666666655543
No 193
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.06 Score=57.69 Aligned_cols=154 Identities=18% Similarity=0.237 Sum_probs=109.6
Q ss_pred HHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhh-cCCCChhHHHHHHHHHHHhHhhhcHHHHhhhh
Q 001584 340 EFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGA-LRDPEQFVRGAASFALGQFAEYLQPEIVSHYE 418 (1049)
Q Consensus 340 ~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 418 (1049)
..|.+++.+.+.-.|+++.++++..--|.+.. .++..++.. .+|.+..||.+|.-+||-+|..-.
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~GTgn~------~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-------- 584 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVGTGNL------GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-------- 584 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhcCCcc------hhHhhhheeecccCchHHHHHHHHheeeeEecCc--------
Confidence 45566677777888888877765544333221 234444443 678899999999999997765532
Q ss_pred hHHHHHHHhccCC-ChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhccc
Q 001584 419 SVLPCILNALEDE-SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIP 497 (1049)
Q Consensus 419 ~ll~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~~ 497 (1049)
..++..++.|.++ ++.||....-+|+-.|...+.. ..++.|-.++.+...-||..|+-+++-+.....+.+.|
T Consensus 585 ~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp 658 (926)
T COG5116 585 DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNP 658 (926)
T ss_pred chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccCh
Confidence 2555666666544 6899999999999888776643 22334444556778889999999999998888888888
Q ss_pred cHHHHHHHHHHHHhcc
Q 001584 498 YAERVLELLKIFMVLT 513 (1049)
Q Consensus 498 ~~~~~~~~l~~~l~~~ 513 (1049)
-+..+...+.+++...
T Consensus 659 ~v~~I~k~f~~vI~~K 674 (926)
T COG5116 659 NVKRIIKKFNRVIVDK 674 (926)
T ss_pred hHHHHHHHHHHHHhhh
Confidence 8888888888887654
No 194
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=6 Score=50.11 Aligned_cols=204 Identities=13% Similarity=0.071 Sum_probs=125.2
Q ss_pred hHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCC-ChHHHHHHHH--HHHHHHHhhccc-----ccc--chHHHH
Q 001584 393 FVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE-SDEVKEKSYY--ALAAFCEDMGEE-----ILP--FLDPLM 462 (1049)
Q Consensus 393 ~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~v~~~a~~--~l~~l~~~~~~~-----l~~--~~~~ll 462 (1049)
.+-.+|....+.++.+.++.++-.+-..++..+...... ...|+.++.. ++-++.+...+. +.| +...-+
T Consensus 799 s~Idta~~lfg~vfp~v~~k~~~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~ 878 (2067)
T KOG1822|consen 799 SLIDTAVSLFGSVFPHVNNKIRLSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSAL 878 (2067)
T ss_pred HHHHHHHHHHHHhccCccHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHH
Confidence 355566666666666665544433333444444333332 3456655555 666666655321 211 223334
Q ss_pred HHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhcccc
Q 001584 463 GKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEP 542 (1049)
Q Consensus 463 ~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~ 542 (1049)
..+.+.+..+++..|..+.++++.++...++ .+|...+...+..-+....++ ..|..-.-++|.+-+.+|.-.-..
T Consensus 879 ~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~--~~f~a~~aq~~fdklas~~d~--i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 879 TLIVNSLINPNPKLRCAAAEALARLAQVVGS--APFVASLAQNSFDKLASARDP--ITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHhhhhccCChHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHhccCCCCch
Confidence 4555667778999999999999999988765 345555555555555444433 234444567777777776433334
Q ss_pred chHHHHHHHHhccCCC-CchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCC
Q 001584 543 ILPPFVEAAISGFGLE-FSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDD 600 (1049)
Q Consensus 543 ~~~~i~~~l~~~l~~~-~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~ 600 (1049)
++..-+..++...++. .+.++..++.++.-+....++-+.-|....+..+...+-..+
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p 1013 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVP 1013 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCC
Confidence 4444444444434443 558999999999999998888888888888777777765544
No 195
>PF05536 Neurochondrin: Neurochondrin
Probab=96.14 E-value=3.5 Score=47.21 Aligned_cols=180 Identities=12% Similarity=0.123 Sum_probs=121.6
Q ss_pred hHHhHHHHHHHHHhhcChHHH--HHhHHHHHHHHHhhcCCCCh-hHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHH
Q 001584 352 KYREAAVTAIGIISEGCAEWM--KEKLESVLHIVLGALRDPEQ-FVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILN 426 (1049)
Q Consensus 352 ~~r~~al~~l~~i~~~~~~~~--~~~l~~i~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~ 426 (1049)
..+.-|+..|..++.. +.+ .+.+-.-+|.++..+..... .+..-|..+|..++.. ++....+ ...++.+.+
T Consensus 72 ~~~~LavsvL~~f~~~--~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~--~~G~~aLl~~g~v~~L~e 147 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCRD--PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS--PEGAKALLESGAVPALCE 147 (543)
T ss_pred HHHHHHHHHHHHHcCC--hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC--cHhHHHHHhcCCHHHHHH
Confidence 3555666666666652 222 24466778888888876555 8888899999999854 2233322 356777777
Q ss_pred hccCCChHHHHHHHHHHHHHHHhhcccc----ccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhh------hcc
Q 001584 427 ALEDESDEVKEKSYYALAAFCEDMGEEI----LPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ------AFI 496 (1049)
Q Consensus 427 ~l~~~~~~v~~~a~~~l~~l~~~~~~~l----~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~------~~~ 496 (1049)
.+.+ .+...+.|+..+..++...+... ...+..+++.+...+.......+-.++..++.+....+. .-.
T Consensus 148 i~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~ 226 (543)
T PF05536_consen 148 IIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSP 226 (543)
T ss_pred HHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChh
Confidence 7766 46778889999999887765322 234456677777777766777788888888888766631 112
Q ss_pred ccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchh
Q 001584 497 PYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRA 538 (1049)
Q Consensus 497 ~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~ 538 (1049)
.....+...+..+++..-. ...|..++...+.+....|.+
T Consensus 227 ~W~~~l~~gl~~iL~sr~~--~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 227 KWLSDLRKGLRDILQSRLT--PSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred hhHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHhChH
Confidence 3556677788888865432 345777888888888888754
No 196
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.96 E-value=11 Score=51.24 Aligned_cols=420 Identities=15% Similarity=0.148 Sum_probs=225.7
Q ss_pred ccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcC-CHHHHHHHHHHHH
Q 001584 153 FRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASG-EEDVAVIAFEIFD 231 (1049)
Q Consensus 153 ~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~~~~~~~~~l~ 231 (1049)
+.++.+-++.-+..+++. +++++..+++.|.-++.....+.-...+.+..+.+++.+...++.. +......|+++|.
T Consensus 715 Llpylp~LM~PLv~aLkg--s~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~~~~~~s~s~~a~rILG 792 (3550)
T KOG0889|consen 715 LLPYLPLLMKPLVFALKG--SPELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLRPVPNYSYSHRALRILG 792 (3550)
T ss_pred hhhhhhhhhhHHHHHhcC--CHHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 457778888888888775 6889999999999988877544434446667777888887776653 5667888999999
Q ss_pred HHhccCCcchhh-----------------------------hHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhh---
Q 001584 232 ELIESPAPLLGD-----------------------------SVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKY--- 279 (1049)
Q Consensus 232 ~l~~~~~~~~~~-----------------------------~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~--- 279 (1049)
.+...+..++.+ .+...+.....+..+...+...|.++...+......
T Consensus 793 KlgG~NRq~l~~~q~l~~~~~~~~~~~l~~s~~~~~~~~~lp~~~~i~sA~~~l~s~~~d~~~~~qa~~~l~~~~~~~~~ 872 (3550)
T KOG0889|consen 793 KLGGRNRQFLKRPQDLEEIDEDDIDIRLVFSFKGLAHPLLLPLSKLIRSAFDALVSPNSDPFYRKQAFKYLRCDLLLMVN 872 (3550)
T ss_pred hhcCcchhhcccccccccccCccccceEEEeccccCccccCchHHHHHHHHHHHhCccCCcchHHHHHHHHHHHHHHHHh
Confidence 887654322211 122344444444444444555565555433321100
Q ss_pred hHhhhhh--------------------------------cCChHH-H------------------------HHHHhhh--
Q 001584 280 KYNSLKK--------------------------------HKLVIP-I------------------------LQVMCPL-- 300 (1049)
Q Consensus 280 ~~~~~~~--------------------------------~~~~~~-i------------------------l~~l~~~-- 300 (1049)
....++. ..+... + +..++..
T Consensus 873 ~~~~~~~~~~~l~~~~~~~i~~~~e~~~~n~~~~~~~~~~~~a~~~~~~~~l~~~~~a~~~~elr~~a~~~~~~il~~f~ 952 (3550)
T KOG0889|consen 873 LSADFKSSIRQLLTLVVWSIDLRLECCEINLDLTERYKSQDYSDRSIFVNALISLFYATSCKELRDEAQDFLEAILRHFA 952 (3550)
T ss_pred hhccchhhHHHHHHhhcchHHHhhHhhhccccccccccccchhHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHH
Confidence 0000000 000000 0 0000000
Q ss_pred ----h--cc------CCC-C--------C------------CCCCCcHHHHHHHHHHHHHH----Hcc-------hhchH
Q 001584 301 ----L--AE------SNE-A--------G------------EDDDLAPDRAAAEVIDTMAL----NLA-------KHVFP 336 (1049)
Q Consensus 301 ----l--~~------~~~-~--------~------------~d~~~~~~~~a~~~l~~l~~----~~~-------~~~~~ 336 (1049)
. .. ... + | ..++...+..+..+++.+.. .+| ..+++
T Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~ 1032 (3550)
T KOG0889|consen 953 LHGVVLYTGSNQLKHSNFGSNLQYKKMLDPSTFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFE 1032 (3550)
T ss_pred HHHHHHhhcchhccccccccccccccccCHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHH
Confidence 0 00 000 0 0 00112334444444444332 233 13345
Q ss_pred HHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHH-HHHhHHHHHHHHHhhcCCCChhHHH----HHHHHHHHhHhhhcH
Q 001584 337 PVFEFASVSCQNASPKYREAAVTAIGIISEGCAEW-MKEKLESVLHIVLGALRDPEQFVRG----AASFALGQFAEYLQP 411 (1049)
Q Consensus 337 ~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~-~~~~l~~i~~~l~~~l~d~~~~vr~----~a~~~l~~l~~~~~~ 411 (1049)
.+++.+...+.++.|..|.+++.+++.+.+..+.. +....-.++..+...+.|...++-. .+-.++-.+...+..
T Consensus 1033 ~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~ 1112 (3550)
T KOG0889|consen 1033 YLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFI 1112 (3550)
T ss_pred HHHHHHHHHhccHhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHH
Confidence 56666667778899999999999999999887632 2334455666666555543222211 222333333222211
Q ss_pred ------HHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHH-HHhh----cCCCHhHHHHH
Q 001584 412 ------EIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKL-LAAL----ENSPRNLQETC 480 (1049)
Q Consensus 412 ------~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l-~~~l----~~~~~~v~~~~ 480 (1049)
+-......++..++..+.+++..||..+..+|..+.+..+..+...+..+-+.+ ...+ .......+...
T Consensus 1113 ~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~ 1192 (3550)
T KOG0889|consen 1113 DELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGH 1192 (3550)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhh
Confidence 111345678888889999999999999999999999887554433333333322 1111 12233445555
Q ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHh---ccCh--------------h-hhhhHHHHHHHHHHHHHhhc--hhcc
Q 001584 481 MSAIGSVAAAAEQAFIPYAERVLELLKIFMV---LTND--------------E-DLRSRARATELLGLVAESVG--RARM 540 (1049)
Q Consensus 481 ~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~---~~~~--------------~-~~~~r~~a~~~l~~l~~~~~--~~~~ 540 (1049)
+.++...... +..+-.|...+..+.+.... ..++ + -..+|..++++++....... -...
T Consensus 1193 vd~~~fC~~l-~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~ 1271 (3550)
T KOG0889|consen 1193 LDAITFCLSL-GPCLFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQH 1271 (3550)
T ss_pred HHHHHHHHHc-CCcccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhh
Confidence 5555444433 33333444433332222111 1100 0 11246666666665544332 1234
Q ss_pred ccchHHHHHHHHhccCCCCchhhHHHHHHHHHHHH
Q 001584 541 EPILPPFVEAAISGFGLEFSELREYTHGFFSNIAG 575 (1049)
Q Consensus 541 ~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~ 575 (1049)
.++-+.++..+++.+..+.+++.+.+..++.....
T Consensus 1272 ~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~~ 1306 (3550)
T KOG0889|consen 1272 AELREKIIAVFFKSLYKRSSELIEVALEGLRKVLA 1306 (3550)
T ss_pred hhhhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Confidence 66778899999999888888888887776665554
No 197
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=95.95 E-value=0.044 Score=46.71 Aligned_cols=98 Identities=9% Similarity=0.206 Sum_probs=77.7
Q ss_pred cccchHHHHHHHHHhhcC----CCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHH
Q 001584 454 ILPFLDPLMGKLLAALEN----SPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLG 529 (1049)
Q Consensus 454 l~~~~~~ll~~l~~~l~~----~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~ 529 (1049)
+.+++-.++..+-..+.+ .+..-|..++.+++.+.+..++....+.++++..|+..+... .++..+++|..
T Consensus 5 L~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~-----~l~~~al~~W~ 79 (107)
T PF08064_consen 5 LQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP-----ELREEALSCWN 79 (107)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh-----hhHHHHHHHHH
Confidence 344555666666666655 456689999999999999878888888899999988887543 57788999999
Q ss_pred HHHHhhchhccccchHHHHHHHHhccC
Q 001584 530 LVAESVGRARMEPILPPFVEAAISGFG 556 (1049)
Q Consensus 530 ~l~~~~~~~~~~~~~~~i~~~l~~~l~ 556 (1049)
.+.+.++.+.+.|.+++++-.++..+.
T Consensus 80 ~fi~~L~~~~l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 80 CFIKTLDEEDLGPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999988899998888877776553
No 198
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=95.88 E-value=2 Score=49.21 Aligned_cols=325 Identities=14% Similarity=0.159 Sum_probs=166.2
Q ss_pred Ccc-hHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHH--HHHHHHhhCCCCChHHHHHHHHHHHHhhcccC
Q 001584 116 WPD-LLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADM--QALLLKCLQDETSNRVRIAALKAIGSFLEFTN 192 (1049)
Q Consensus 116 w~~-ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l--~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~ 192 (1049)
|.+ -+|..++.+.+.++.++..|-.-+..++-...+. ...+.++ ++.+...|.+ +..+|+..|+.+|.+++.-..
T Consensus 230 w~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~i-k~~vrqlggI~kLv~Ll~~-~~~evq~~acgaLRNLvf~~~ 307 (717)
T KOG1048|consen 230 WRDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKI-KSRVRQLGGIPKLVALLDH-RNDEVQRQACGALRNLVFGKS 307 (717)
T ss_pred ccccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHH-HHHHHHhccHHHHHHHhcC-CcHHHHHHHHHHHHhhhcccC
Confidence 644 3677888888888888877776677666332211 1233333 5667788887 999999999999999876544
Q ss_pred C--hhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHH-hh------hCCCCC-
Q 001584 193 D--GAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLE-VS------SSHNLE- 262 (1049)
Q Consensus 193 ~--~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~-~~------~~~~~~- 262 (1049)
. +.......+=+|.++..+.+. .|.++++.+..+|+++.....- -...+..-+..+.. +. .+++..
T Consensus 308 ~~~NKlai~~~~Gv~~l~~~Lr~t---~D~ev~e~iTg~LWNLSS~D~l-K~~ii~~al~tLt~~vI~P~Sgw~~~~~~~ 383 (717)
T KOG1048|consen 308 TDSNKLAIKELNGVPTLVRLLRHT---QDDEVRELITGILWNLSSNDAL-KMLIITSALSTLTDNVIIPHSGWEEEPAPR 383 (717)
T ss_pred CcccchhhhhcCChHHHHHHHHhh---cchHHHHHHHHHHhcccchhHH-HHHHHHHHHHHHHHhhcccccccCCCCccc
Confidence 3 222222345567777776543 6777777777777776655211 01111111111111 00 001111
Q ss_pred ----hHHHHHHHHHHHHHHhhhHhh---hhh-cCChHHHHHHHhhhhccCCCCC-----------------CCCC-----
Q 001584 263 ----PNTRHQAIQIISWLAKYKYNS---LKK-HKLVIPILQVMCPLLAESNEAG-----------------EDDD----- 312 (1049)
Q Consensus 263 ----~~~r~~a~~~l~~l~~~~~~~---~~~-~~~~~~il~~l~~~l~~~~~~~-----------------~d~~----- 312 (1049)
.++-..+.-+|..+....... +++ .+.+..++..+-..+...+-|+ +.+.
T Consensus 384 ~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~ 463 (717)
T KOG1048|consen 384 KAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYR 463 (717)
T ss_pred ccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhh
Confidence 122222223333322211111 110 0111111111111111111000 0000
Q ss_pred ------------CcHHHHHHHHHHHHHHH---------cc---------hhch-HHHHHHHHhhh-cCCChhHHhHHHHH
Q 001584 313 ------------LAPDRAAAEVIDTMALN---------LA---------KHVF-PPVFEFASVSC-QNASPKYREAAVTA 360 (1049)
Q Consensus 313 ------------~~~~~~a~~~l~~l~~~---------~~---------~~~~-~~ll~~l~~~l-~~~~~~~r~~al~~ 360 (1049)
..+. ....|+..-... ++ +-.| |.++.....++ .+.+...-+++.-+
T Consensus 464 ~~~~~~~~~~~~~~~~-~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGa 542 (717)
T KOG1048|consen 464 QVLANIARLPGVGPPA-ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGA 542 (717)
T ss_pred hHhhcccccccCCCcc-cccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhh
Confidence 0000 001111111111 01 1112 34444322232 34556677777777
Q ss_pred HHHHhhcCh---HHHHHhH---HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHHHHhccCCC-
Q 001584 361 IGIISEGCA---EWMKEKL---ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDES- 432 (1049)
Q Consensus 361 l~~i~~~~~---~~~~~~l---~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l~~~~- 432 (1049)
|..+.-+.+ ..+...+ +..+|.++..+..++..|..+++.+|..++.... .++.+ ...++.|++.|.+..
T Consensus 543 LQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r--nk~ligk~a~~~lv~~Lp~~~~ 620 (717)
T KOG1048|consen 543 LQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR--NKELIGKYAIPDLVRCLPGSGP 620 (717)
T ss_pred HhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch--hhhhhhcchHHHHHHhCcCCCC
Confidence 877766532 2333222 4568999999999999999999999999988753 22222 358889999887654
Q ss_pred -----hHHHHHHHHHHHHHHHh
Q 001584 433 -----DEVKEKSYYALAAFCED 449 (1049)
Q Consensus 433 -----~~v~~~a~~~l~~l~~~ 449 (1049)
..+-..+|..|.+++..
T Consensus 621 ~~~~sedtv~~vc~tl~niv~~ 642 (717)
T KOG1048|consen 621 STSLSEDTVRAVCHTLNNIVRK 642 (717)
T ss_pred CcCchHHHHHHHHHhHHHHHHH
Confidence 35667788888888843
No 199
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.86 E-value=0.3 Score=54.63 Aligned_cols=190 Identities=17% Similarity=0.194 Sum_probs=133.8
Q ss_pred HHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHH
Q 001584 246 KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDT 325 (1049)
Q Consensus 246 ~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~ 325 (1049)
..+++.+++.++.. |..+|..-++-+...+.+-.. +.+-.+|++.+...+.+.+. ..|.....++..
T Consensus 329 ~~i~p~l~kLF~~~--Dr~iR~~LL~~i~~~i~~Lt~----~~~~d~I~phv~~G~~DTn~-------~Lre~Tlksm~~ 395 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSP--DRQIRLLLLQYIEKYIDHLTK----QILNDQIFPHVALGFLDTNA-------TLREQTLKSMAV 395 (690)
T ss_pred cchhhhHHHHhcCc--chHHHHHHHHhHHHHhhhcCH----HhhcchhHHHHHhhcccCCH-------HHHHHHHHHHHH
Confidence 34555556666555 677887766666555544222 12334577777666666654 788888999999
Q ss_pred HHHHcchhc-hHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 001584 326 MALNLAKHV-FPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQ 404 (1049)
Q Consensus 326 l~~~~~~~~-~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~ 404 (1049)
++..+++.. -..++..+.....+++...|.-...++|.++......... .-+.......+.||-+.-|.++.+++..
T Consensus 396 La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~--~vL~~aftralkdpf~paR~a~v~~l~a 473 (690)
T KOG1243|consen 396 LAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRK--RVLASAFTRALKDPFVPARKAGVLALAA 473 (690)
T ss_pred HHhhhchhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhc--cccchhhhhhhcCCCCCchhhhhHHHhh
Confidence 999988554 3567777666656667778888888898888764433222 1223345557899999999999999988
Q ss_pred hHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhcc
Q 001584 405 FAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE 452 (1049)
Q Consensus 405 l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~ 452 (1049)
-.+.+. ....-.+++|.+.-..-|+++.||..|..++..+.....+
T Consensus 474 t~~~~~--~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 474 TQEYFD--QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred cccccc--hhhhhhhccccccccccCcccchhhHHHHHHHHHHhhhhh
Confidence 877764 2445567899998888999999999999999988876643
No 200
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.82 E-value=7.7 Score=48.43 Aligned_cols=350 Identities=15% Similarity=0.178 Sum_probs=178.1
Q ss_pred hhhHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHhcc---CCcchhhhHHHHHHHHHHhhhC-CCCChHHHHHHHHHHHHH
Q 001584 202 EFIPSILNVSRQ-CLASGEEDVAVIAFEIFDELIES---PAPLLGDSVKSIVHFSLEVSSS-HNLEPNTRHQAIQIISWL 276 (1049)
Q Consensus 202 ~~~~~ll~~l~~-~l~~~~~~~~~~~~~~l~~l~~~---~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~r~~a~~~l~~l 276 (1049)
.+.|....++.. ++.+.|.+++....-|+.++... ..++-+..+.+++.+++..+.. .+.....-.+-...+.++
T Consensus 45 ~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl 124 (1266)
T KOG1525|consen 45 SLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETL 124 (1266)
T ss_pred HHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHH
Confidence 344444444433 45678888888888888887654 3456667778888777654422 222222111223344444
Q ss_pred HhhhHhhhhh----cCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc--hhchHHHHHHHHhhhcCCC
Q 001584 277 AKYKYNSLKK----HKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA--KHVFPPVFEFASVSCQNAS 350 (1049)
Q Consensus 277 ~~~~~~~~~~----~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~--~~~~~~ll~~l~~~l~~~~ 350 (1049)
+......+.. ..++..++..++....+.-.. .+-. .++-+...+. +.+-..++..+...+-++.
T Consensus 125 ~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~------~v~~----~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~ 194 (1266)
T KOG1525|consen 125 AKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPK------KVFN----MLDIAIMLITEEDTVQSELLDVLLENLVKPG 194 (1266)
T ss_pred HHhHHHheeeccchHHHHHHHHHHHHHHHhccccH------HHHH----HHHHHHHHHHhhccchHHHHHHHHHHhccCC
Confidence 4433211111 123344444555444332210 1111 2222222111 2233344444444444444
Q ss_pred hhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccC
Q 001584 351 PKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALED 430 (1049)
Q Consensus 351 ~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~ 430 (1049)
...+.+|...=..+.+.|++.+.+.+.+.+...+..-...-..++...-..+..+.... .+.+-.++|.|...|..
T Consensus 195 ~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~----p~ll~~vip~l~~eL~s 270 (1266)
T KOG1525|consen 195 RDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIA----PQLLLAVIPQLEFELLS 270 (1266)
T ss_pred CCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhh----HHHHHHHHHHHHHHHhc
Confidence 44444444444445555555444433333322111111111223333333343333332 23445688888888888
Q ss_pred CChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHH
Q 001584 431 ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFM 510 (1049)
Q Consensus 431 ~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l 510 (1049)
.+..+|..|...++.+.......+..-.+.++..++..+.+....||..++++...+....+.... ...++-.++.
T Consensus 271 e~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~--~~~~~~~l~~-- 346 (1266)
T KOG1525|consen 271 EQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAK--ASTILLALRE-- 346 (1266)
T ss_pred chHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhh--HHHHHHHHHh--
Confidence 889999999999999988776555556778888888888999999999999988776554322110 0111111111
Q ss_pred hccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCCCchhhHHHHHHHHHHHH
Q 001584 511 VLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAG 575 (1049)
Q Consensus 511 ~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~ 575 (1049)
...|++.+.|...+ +.... + .+.-..+.+.++..+.+-+.+..|.+|..|+.-+..+-.
T Consensus 347 -~~~D~~~rir~~v~--i~~~~--v-~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 347 -RDLDEDVRVRTQVV--IVACD--V-MKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred -hcCChhhhheeeEE--EEEee--h-hHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 12233333332111 11000 0 001112223366666666778889999999887777665
No 201
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=4.2 Score=45.35 Aligned_cols=326 Identities=15% Similarity=0.185 Sum_probs=192.1
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHH
Q 001584 3 QSLELLLIQFL-MPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ 81 (1049)
Q Consensus 3 ~~l~~ll~~~~-s~d~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~ 81 (1049)
.+++.+...++ |.|+..|-+||..|.++..+|+.+..+--++.++..+.-.-+|+..|-+.+..+- .++-+.+-.|++
T Consensus 5 aqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~lpl~qrldir~ 83 (1082)
T KOG1410|consen 5 AQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-PLPLEQRLDIRN 83 (1082)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CCcHHHHHHHHH
Confidence 46788888885 6799999999999999999999999988888888888889999999999887765 788999999999
Q ss_pred HHHHHHhhc-C--CHHHHHHHHHHHHHHHhccCCCC-----CCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcc
Q 001584 82 SLIESITLE-H--SAPVRRASANVVSIIAKYAVPAG-----EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF 153 (1049)
Q Consensus 82 ~ll~~l~~e-~--~~~vr~~~~~~l~~i~~~~~~~~-----~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~ 153 (1049)
-+++.+.+. + .+.|...+++.++.+.+..+-+. .+.+.+..+...++.++.+....|+.++..+...+...-
T Consensus 84 Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqemN~~~ 163 (1082)
T KOG1410|consen 84 YILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEMNQAD 163 (1082)
T ss_pred HHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHHhhCCC
Confidence 999999862 2 46788899999999988543221 245677888888888888888899999999987764210
Q ss_pred cccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhc------CCHHHHHHHH
Q 001584 154 RPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLAS------GEEDVAVIAF 227 (1049)
Q Consensus 154 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~------~~~~~~~~~~ 227 (1049)
..+-..-..-+...+.|+.=.+|-..|+..|......--. ...-..++..+++...+++.- .|+.. .
T Consensus 164 ~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nln---d~~q~~L~~~vL~L~l~Cl~FDfiGss~DEss-e--- 236 (1082)
T KOG1410|consen 164 GMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLN---DRAQLGLLMQVLKLNLNCLNFDFIGSSTDESS-E--- 236 (1082)
T ss_pred CCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcc---cHhHhhHHHHHHHHHhhhcccccccccccccc-c---
Confidence 0000000011112223312223444444444433311100 011123333444443333321 01100 0
Q ss_pred HHHHHHhccCCcchhhhH--HHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhh---cCChHHHHHHHhhhhc
Q 001584 228 EIFDELIESPAPLLGDSV--KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKK---HKLVIPILQVMCPLLA 302 (1049)
Q Consensus 228 ~~l~~l~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~---~~~~~~il~~l~~~l~ 302 (1049)
-+... ..|......+ +..++.++..... .++.....+++++..+++.....+.. .+|+..++...-.++.
T Consensus 237 -d~ctV--QIPTsWRs~f~d~stlqlfFdly~s--lp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~il~ 311 (1082)
T KOG1410|consen 237 -DLCTV--QIPTSWRSSFLDSSTLQLFFDLYHS--LPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRILE 311 (1082)
T ss_pred -cccce--ecCcHHHHHhcCchHHHHHHHHhcc--CCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 00000 0011111111 1345555555543 36777788889998888765544422 2366666666556665
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHHHcc------hhchHHHHHHHHh
Q 001584 303 ESNEAGEDDDLAPDRAAAEVIDTMALNLA------KHVFPPVFEFASV 344 (1049)
Q Consensus 303 ~~~~~~~d~~~~~~~~a~~~l~~l~~~~~------~~~~~~ll~~l~~ 344 (1049)
.+..-.+ ......-...++++-..+. -+-.|..+..+.+
T Consensus 312 np~~LsD---~~nyHeFCRllaRlktNYQL~ELv~v~~Y~e~irLiAe 356 (1082)
T KOG1410|consen 312 NPQGLSD---PANYHEFCRLLARLKTNYQLGELVKVECYPEVIRLIAE 356 (1082)
T ss_pred CCcCCCC---cchHHHHHHHHHHHHhhhhhHhhhccCCcHHHHHHHHH
Confidence 5432111 1334455556666554443 2234555555544
No 202
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.80 E-value=0.29 Score=53.85 Aligned_cols=235 Identities=16% Similarity=0.170 Sum_probs=140.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHh-cCCCcHH----HHHHHHh----cCCChhHHHHHHHHHHHhhhhhccCCCHH
Q 001584 4 SLELLLIQFLMPDNDARRQAEDQIKRLA-KDPQVVP----ALVQHLR----TAKTPNVRQLAAVLLRKKITGHWAKLSPQ 74 (1049)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~a~~~L~~~~-~~p~~~~----~l~~il~----~~~~~~~R~~a~~~l~~~i~~~w~~~~~~ 74 (1049)
-+.+++..+.|+|+..|......|-.++ +.++.-. .+..++. .+....-=.-...++...+++.-..+.++
T Consensus 134 fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~e 213 (409)
T PF01603_consen 134 FIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEE 213 (409)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHH
Confidence 3677888889999999999999998765 3444322 2222222 22222211222333444455544567788
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhh-hcc
Q 001584 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG-QTF 153 (1049)
Q Consensus 75 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~-~~~ 153 (1049)
.+..+...++.......-......++.++..+...+. ..-..++..++...--.+..-...-+.-+..+++..+ ..+
T Consensus 214 h~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp--~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f 291 (409)
T PF01603_consen 214 HKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP--SLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEF 291 (409)
T ss_dssp HHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G--GGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHH
Confidence 8888888888877764445567788888888876542 1223345555554433444444455667777777655 445
Q ss_pred cccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHh--hcccCChhhHHHHHhhhHHHHHHHHHHhhcC-CHHHHHHHHHHH
Q 001584 154 RPHFADMQALLLKCLQDETSNRVRIAALKAIGSF--LEFTNDGAEVVKFREFIPSILNVSRQCLASG-EEDVAVIAFEIF 230 (1049)
Q Consensus 154 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~--~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~~~~~~~~~l 230 (1049)
......++..+..++++ ++..|...|+..+.+- +....+. -...+|.++..+.+..... +..++..+..++
T Consensus 292 ~~i~~~lf~~la~ci~S-~h~qVAErAl~~w~n~~~~~li~~~-----~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl 365 (409)
T PF01603_consen 292 QKIMVPLFKRLAKCISS-PHFQVAERALYFWNNEYFLSLISQN-----SRVILPIIFPALYRNSKNHWNQTVRNLAQNVL 365 (409)
T ss_dssp HHHHHHHHHHHHHHHTS-SSHHHHHHHHGGGGSHHHHHHHHCT-----HHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHCCHHHHHHHHhC-----hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66677788999999998 8999988888664331 2222111 2345677777665544332 556888888888
Q ss_pred HHHhccCCcchhhhHH
Q 001584 231 DELIESPAPLLGDSVK 246 (1049)
Q Consensus 231 ~~l~~~~~~~~~~~~~ 246 (1049)
..+.+..+..+.....
T Consensus 366 ~~l~~~d~~lf~~~~~ 381 (409)
T PF01603_consen 366 KILMEMDPKLFDKCAQ 381 (409)
T ss_dssp HHHHTTSHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHH
Confidence 8888887776665443
No 203
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.67 E-value=0.056 Score=45.61 Aligned_cols=97 Identities=11% Similarity=0.192 Sum_probs=75.7
Q ss_pred cccchHHHHHHHHHhhcCCC----HhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHH
Q 001584 454 ILPFLDPLMGKLLAALENSP----RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLG 529 (1049)
Q Consensus 454 l~~~~~~ll~~l~~~l~~~~----~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~ 529 (1049)
+.+++-.++..+.+.+.+.+ ..-|..++.+++.+.+.++.....+.++++..|+..+..+ .+|..+++|..
T Consensus 5 L~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~-----eL~~~al~~W~ 79 (107)
T smart00802 5 LKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP-----ELRSLALRCWH 79 (107)
T ss_pred HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-----hHHHHHHHHHH
Confidence 34556667777777766543 3459999999999999999888888899999998888532 37888999999
Q ss_pred HHHHhhchhccccchHHHHHHHHhcc
Q 001584 530 LVAESVGRARMEPILPPFVEAAISGF 555 (1049)
Q Consensus 530 ~l~~~~~~~~~~~~~~~i~~~l~~~l 555 (1049)
.+...+..+...+.+++++-.++..+
T Consensus 80 ~~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 80 VLIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 99999988777777777776666544
No 204
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.66 E-value=0.26 Score=55.19 Aligned_cols=188 Identities=14% Similarity=0.200 Sum_probs=135.0
Q ss_pred ChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc-hhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhc
Q 001584 289 LVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEG 367 (1049)
Q Consensus 289 ~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~-~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~ 367 (1049)
|-..+.+.++++..-.|. ..|.....-+......+. +.+-..++|.+...+.+.+...|+-.+.++..++..
T Consensus 327 yq~~i~p~l~kLF~~~Dr-------~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k 399 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDR-------QIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK 399 (690)
T ss_pred cccchhhhHHHHhcCcch-------HHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh
Confidence 445577777777766554 667777777777777777 445577888888899999999999999999888876
Q ss_pred ChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 001584 368 CAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFC 447 (1049)
Q Consensus 368 ~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~ 447 (1049)
..... .-.+++..+...-.|.+..+|-....|+|.++.+..+..+.. -+.....+.+.|+-..-|.++..++....
T Consensus 400 L~~~~--Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~--vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 400 LSKRN--LNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKR--VLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred hchhh--hcHHHHHHHHhhCccccCcccccceeeecccccccchhhhcc--ccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 54331 113566666666569999999999999999999887655332 24455566788887777888888877665
Q ss_pred HhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHH
Q 001584 448 EDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (1049)
Q Consensus 448 ~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~ 489 (1049)
+.+.. ......|++.+....-+.+..+|..+..++...-.
T Consensus 476 ~~~~~--~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 476 EYFDQ--SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLE 515 (690)
T ss_pred cccch--hhhhhhccccccccccCcccchhhHHHHHHHHHHh
Confidence 54432 23455677777777777888899888887765443
No 205
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.65 E-value=0.7 Score=49.10 Aligned_cols=196 Identities=14% Similarity=0.202 Sum_probs=107.8
Q ss_pred CcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhccC---C---CHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 001584 35 QVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAK---L---SPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIA 107 (1049)
Q Consensus 35 ~~~~~l~~il~~~-~~~~~R~~a~~~l~~~i~~~w~~---~---~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~ 107 (1049)
.....++.++.+. +++.+.++...++-..+...-.. + ........-..+++.+.+ ++..+...++.+++.++
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~-~D~~i~~~a~~iLt~Ll 133 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR-NDSFIQLKAAFILTSLL 133 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S--SSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Confidence 4556666776665 78899999999988876543211 1 110111144566775554 79999999999999998
Q ss_pred hccCCCCCCc---chHHHHHHhccC----CCHHHHHHHHHHHHHhhhhhh--hcccccHHHHHHHHHHhh------CCCC
Q 001584 108 KYAVPAGEWP---DLLPFLFQFSQS----EQEEHREVALILFSSLTETIG--QTFRPHFADMQALLLKCL------QDET 172 (1049)
Q Consensus 108 ~~~~~~~~w~---~ll~~l~~~l~~----~~~~~~~~al~~l~~l~~~~~--~~~~~~~~~l~~~l~~~l------~~~~ 172 (1049)
...... .-. +.++.+++++.+ ++...+..++.++..+...-. ..+.. ...++.+...+ .+..
T Consensus 134 ~~~~~~-~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL~~~~~~~~~~ 210 (312)
T PF03224_consen 134 SQGPKR-SEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDILRKQATNSNSS 210 (312)
T ss_dssp TSTTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHHH---------
T ss_pred HcCCcc-ccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHHHhhcccCCCC
Confidence 865432 233 678888887765 334556788899998874322 22211 44555666666 2223
Q ss_pred ChHHHHHHHHHHHHhhcccCChhhHHHH--HhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcc
Q 001584 173 SNRVRIAALKAIGSFLEFTNDGAEVVKF--REFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (1049)
Q Consensus 173 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~--~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (1049)
+..+...++-|+=. ..+.+ .....+ ..++|.++..+... ..+.+.+-++.++.++++..+..
T Consensus 211 ~~Ql~Y~~ll~lWl-LSF~~--~~~~~~~~~~~i~~L~~i~~~~---~KEKvvRv~la~l~Nl~~~~~~~ 274 (312)
T PF03224_consen 211 GIQLQYQALLCLWL-LSFEP--EIAEELNKKYLIPLLADILKDS---IKEKVVRVSLAILRNLLSKAPKS 274 (312)
T ss_dssp HHHHHHHHHHHHHH-HTTSH--HHHHHHHTTSHHHHHHHHHHH-----SHHHHHHHHHHHHHTTSSSSTT
T ss_pred chhHHHHHHHHHHH-HhcCH--HHHHHHhccchHHHHHHHHHhc---ccchHHHHHHHHHHHHHhccHHH
Confidence 45566665555422 22221 111222 34677777776554 45678888999999999887753
No 206
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.56 E-value=3.9 Score=43.20 Aligned_cols=311 Identities=13% Similarity=0.114 Sum_probs=144.6
Q ss_pred CCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccc-cHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCC
Q 001584 115 EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRP-HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTND 193 (1049)
Q Consensus 115 ~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~ 193 (1049)
.|..++ ..+...++-..+.+..++..++......+.. .+.-....+...++...+...+..+.+||..++...+-
T Consensus 115 ~~~~fl----~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~ey 190 (442)
T KOG2759|consen 115 EWLSFL----NLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEY 190 (442)
T ss_pred chHHHH----HHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcch
Confidence 355444 4445566666676888888887654433332 33344555666666545667788888899888765431
Q ss_pred hhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHH--HHHHHHHHhhhCCCCChHHHHHHHH
Q 001584 194 GAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK--SIVHFSLEVSSSHNLEPNTRHQAIQ 271 (1049)
Q Consensus 194 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~l~~~~~~~~~~~~~r~~a~~ 271 (1049)
....-. .+-+..++..+. -...+....-..+-|++.+. .+|++. ..+. .+++.+..+.++. ..+.+-+.++.
T Consensus 191 R~~~v~-adg~~~l~~~l~--s~~~~~QlQYqsifciWlLt-Fn~~~a-e~~~~~~li~~L~~Ivk~~-~KEKV~Rivla 264 (442)
T KOG2759|consen 191 RYAFVI-ADGVSLLIRILA--STKCGFQLQYQSIFCIWLLT-FNPHAA-EKLKRFDLIQDLSDIVKES-TKEKVTRIVLA 264 (442)
T ss_pred hheeee-cCcchhhHHHHh--ccCcchhHHHHHHHHHHHhh-cCHHHH-HHHhhccHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 110000 011112222221 11123334434444444332 222221 1111 3455555555543 23455555566
Q ss_pred HHHHHHhhhHhhhhhcCChHHH----HHHHhhhhccCCCCCCCCCCcHHHH---HHHHHHHHHHHcchhchHHHHHHHHh
Q 001584 272 IISWLAKYKYNSLKKHKLVIPI----LQVMCPLLAESNEAGEDDDLAPDRA---AAEVIDTMALNLAKHVFPPVFEFASV 344 (1049)
Q Consensus 272 ~l~~l~~~~~~~~~~~~~~~~i----l~~l~~~l~~~~~~~~d~~~~~~~~---a~~~l~~l~~~~~~~~~~~ll~~l~~ 344 (1049)
.+..+.+..+..-.+.....++ ++..+..|.+..=+|| +.... ..+.|+.-.+.+. .+.....-+..
T Consensus 265 i~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDE----DL~~di~~L~e~L~~svq~Ls--SFDeY~sEl~s 338 (442)
T KOG2759|consen 265 IFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDE----DLVDDIEFLTEKLKNSVQDLS--SFDEYKSELRS 338 (442)
T ss_pred HHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcH----HHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHh
Confidence 6666665443211111111111 1112222322211111 11111 1111222222111 01111111111
Q ss_pred hhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCC-CChhHHHHHHHHHHHhHhhhcHHHHhhhh--hHH
Q 001584 345 SCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD-PEQFVRGAASFALGQFAEYLQPEIVSHYE--SVL 421 (1049)
Q Consensus 345 ~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~ll 421 (1049)
..-.-++..+..-.| .++. +.+.++=-+++..++..|.. .+|.+-..||.=+|.+..+.+. ....+. ..=
T Consensus 339 G~L~WSP~Hk~e~FW-----~eNa-~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~-gk~vv~k~ggK 411 (442)
T KOG2759|consen 339 GRLEWSPVHKSEKFW-----RENA-DRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE-GKAVVEKYGGK 411 (442)
T ss_pred CCcCCCccccccchH-----HHhH-HHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch-HhHHHHHhchH
Confidence 111112222222222 1111 11222223677788888874 4588888999999999998854 332222 234
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHH
Q 001584 422 PCILNALEDESDEVKEKSYYALAAFCE 448 (1049)
Q Consensus 422 ~~l~~~l~~~~~~v~~~a~~~l~~l~~ 448 (1049)
..+++.++.++++||.+|+.|+..++.
T Consensus 412 e~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 412 ERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 556788999999999999999988764
No 207
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.55 E-value=2 Score=42.23 Aligned_cols=111 Identities=21% Similarity=0.316 Sum_probs=77.2
Q ss_pred hHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCC
Q 001584 352 KYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE 431 (1049)
Q Consensus 352 ~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~ 431 (1049)
..|+.|++.|..+... .-+..+...+.+++...|..+..++|++-... -+|.+.+.|.+.
T Consensus 171 ~~Ry~amF~LRn~g~E----------eaI~al~~~l~~~SalfrhEvAfVfGQl~s~~----------ai~~L~k~L~d~ 230 (289)
T KOG0567|consen 171 FERYRAMFYLRNIGTE----------EAINALIDGLADDSALFRHEVAFVFGQLQSPA----------AIPSLIKVLLDE 230 (289)
T ss_pred HHHHhhhhHhhccCcH----------HHHHHHHHhcccchHHHHHHHHHHHhhccchh----------hhHHHHHHHHhh
Confidence 4677777777665432 34567778888888899999999998885542 455666666554
Q ss_pred --ChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhh
Q 001584 432 --SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (1049)
Q Consensus 432 --~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~ 492 (1049)
++-||..|+.+|+.+... ..++.|...+.+..+-+++.+..++...-...+
T Consensus 231 ~E~pMVRhEaAeALGaIa~e----------~~~~vL~e~~~D~~~vv~esc~valdm~eyens 283 (289)
T KOG0567|consen 231 TEHPMVRHEAAEALGAIADE----------DCVEVLKEYLGDEERVVRESCEVALDMLEYENS 283 (289)
T ss_pred hcchHHHHHHHHHHHhhcCH----------HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhcc
Confidence 478999999999887643 345566666777778888888877766544333
No 208
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.53 E-value=0.11 Score=42.66 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=60.2
Q ss_pred HHHHHHhhccCCCcccchhhhHhHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcc
Q 001584 826 FDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGES 900 (1049)
Q Consensus 826 ~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~ 900 (1049)
+...+..+.++..+ +|..|+..|..+++... ......+.++..++..++|+|+-|--+|+.+++.++...+..
T Consensus 5 ~~~al~~L~dp~~P-vRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 5 LQEALSDLNDPLPP-VRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHccCCCcc-hHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 34455667777665 79999999999999755 234567899999999999999999999999999999987653
No 209
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.38 E-value=0.26 Score=51.41 Aligned_cols=126 Identities=15% Similarity=0.189 Sum_probs=103.5
Q ss_pred hhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHH-HHhhhhhHHH
Q 001584 344 VSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE-IVSHYESVLP 422 (1049)
Q Consensus 344 ~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~ll~ 422 (1049)
..+++-+.+.|..|+..+..+....+..+..++..+++.+.....|.+..||.....++..+.....++ ..+++.-+++
T Consensus 65 ~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~ 144 (393)
T KOG2149|consen 65 SQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMP 144 (393)
T ss_pred hhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHH
Confidence 346778899999999999998888788888888899999999999999999999999988866554443 3567778889
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhh
Q 001584 423 CILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAAL 469 (1049)
Q Consensus 423 ~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l 469 (1049)
.+..++....+.+|.-+...+..+++.+++.+..+...++..+...+
T Consensus 145 yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i 191 (393)
T KOG2149|consen 145 YISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVI 191 (393)
T ss_pred HHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998766655555555555443
No 210
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.31 E-value=0.8 Score=53.54 Aligned_cols=223 Identities=17% Similarity=0.216 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHHH-HHHHHHH
Q 001584 176 VRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKS-IVHFSLE 254 (1049)
Q Consensus 176 vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-l~~~l~~ 254 (1049)
=|..|+..|++++...+=.-...---.++|-++.. ++++-.+.+....=+|..+....+..-...+.+ ...++++
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKL----LQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~ 561 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKL----LQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQ 561 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHH----hccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEE
Confidence 47788888888887764110111112455666654 555555555544445556655544332222222 1112222
Q ss_pred hhhC-CCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchh
Q 001584 255 VSSS-HNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH 333 (1049)
Q Consensus 255 ~~~~-~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~ 333 (1049)
++.. +..+++-|..|.=+|..++...+.- ++.-+-.+++..++..|.+. .++-.|...+-||+.+=+.+.+.
T Consensus 562 vL~~~~~~~~EqrtmaAFVLAviv~nf~lG-Q~acl~~~li~iCle~lnd~------~~pLLrQW~~icLG~LW~d~~~A 634 (1387)
T KOG1517|consen 562 VLDPSQAIPPEQRTMAAFVLAVIVRNFKLG-QKACLNGNLIGICLEHLNDD------PEPLLRQWLCICLGRLWEDYDEA 634 (1387)
T ss_pred EecCcCCCCHHHHHHHHHHHHHHHcccchh-HHHhccccHHHHHHHHhcCC------ccHHHHHHHHHHHHHHhhhcchh
Confidence 3333 4456677777776777777654321 11112234555566555442 13567888999999988877743
Q ss_pred ch----HHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcC----hH---HH----H-----HhHHHHHH----HHHhhcCC
Q 001584 334 VF----PPVFEFASVSCQNASPKYREAAVTAIGIISEGC----AE---WM----K-----EKLESVLH----IVLGALRD 389 (1049)
Q Consensus 334 ~~----~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~----~~---~~----~-----~~l~~i~~----~l~~~l~d 389 (1049)
-| ....+.+...+.++-+.+|.||+++||.+..+. .+ .. . ...++.+. .++..++|
T Consensus 635 rw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsd 714 (1387)
T KOG1517|consen 635 RWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSD 714 (1387)
T ss_pred hhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhc
Confidence 33 345556666788889999999999999988753 11 01 0 11233333 66777889
Q ss_pred CChhHHHHHHHHHHHhHhhh
Q 001584 390 PEQFVRGAASFALGQFAEYL 409 (1049)
Q Consensus 390 ~~~~vr~~a~~~l~~l~~~~ 409 (1049)
..+.||....-++..+....
T Consensus 715 gsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 715 GSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred cchHHHHHHHHHHHHHHHhh
Confidence 99999999887777766543
No 211
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.27 E-value=0.61 Score=51.32 Aligned_cols=242 Identities=15% Similarity=0.142 Sum_probs=133.5
Q ss_pred hH-HHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q 001584 666 FL-EESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTS 744 (1049)
Q Consensus 666 ~~-~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 744 (1049)
|+ ...+..++.++++.++.-|......+..+...+. .....+. ..+...+.+-+.+.....-+..+++.
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~-------~~r~~Ir---~~i~~~~~~fi~e~~~~~gI~elLei 198 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFP-------NLRSFIR---KSINNIFYRFIYETERHNGIAELLEI 198 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-T-------TTHHHHH---HHHHHHHHHHHHTTS--STHHHHHHH
T ss_pred HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh-------hhHHHHH---HHHHHHHHHHhcCcccccCHHHHHHH
Confidence 54 4777788888888888889888888877766542 1112222 23333333334444455567788888
Q ss_pred HHHHHHHhCCcccHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhHHHHHHHHhHHHHHHHHhCCChHHHHHH
Q 001584 745 IVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAK 824 (1049)
Q Consensus 745 l~~~i~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 824 (1049)
++.++..+....-.++..-+...++++.+.+.- .... .....|+..++..-+. ....
T Consensus 199 l~sii~gf~~plk~eh~~fl~~vllPLh~~~~~---------------~~y~----~~L~~~~~~f~~kdp~----l~~~ 255 (409)
T PF01603_consen 199 LGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHL---------------SSYH----QQLSYCVVQFLEKDPS----LAEP 255 (409)
T ss_dssp HHHHHTT--SS--HHHHHHHHHTTGGGGGSTGG---------------GGTH----HHHHHHHHHHHHH-GG----GHHH
T ss_pred HHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcH---------------HHHH----HHHHHHHHHHHHhCch----hHHH
Confidence 888887555333344555555555555554331 1112 2445566666655333 2233
Q ss_pred HHHHHHHhhccCCCcccchhhhHhHHHHHhhcCCc-hhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHH--HhhcCcch
Q 001584 825 LFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSP-IAAYVDRVMPLVLKELASPDAMNRRNAAFCVGEL--CKNGGESA 901 (1049)
Q Consensus 825 l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~lg~l--~~~~~~~~ 901 (1049)
++..+++..-..++ .-...-+.-+.+++..+++. ..+....++..+.+++++++..|-..|++....= .....+.-
T Consensus 256 ~i~~llk~WP~t~s-~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~ 334 (409)
T PF01603_consen 256 VIKGLLKHWPKTNS-QKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNS 334 (409)
T ss_dssp HHHHHHHHS-SS-H-HHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTH
T ss_pred HHHHHHHhCCCCCc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhCh
Confidence 44444444433332 23456788888888877654 5667888899999999999999888887643321 11111111
Q ss_pred hhHHHHHHHhhhhhhCCCCCChhHHhhHHHHHHHHHHhCCC
Q 001584 902 LKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQ 942 (1049)
Q Consensus 902 ~~~~~~~l~~L~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~ 942 (1049)
...++.+++.|.+... ..-+..++..|..++.-+...+|+
T Consensus 335 ~~i~p~i~~~L~~~~~-~HWn~~Vr~~a~~vl~~l~~~d~~ 374 (409)
T PF01603_consen 335 RVILPIIFPALYRNSK-NHWNQTVRNLAQNVLKILMEMDPK 374 (409)
T ss_dssp HHHHHHHHHHHSSTTS-S-SSTTHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHhCHH
Confidence 1233344444433222 345678888888887766655443
No 212
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.26 E-value=2.4 Score=41.64 Aligned_cols=67 Identities=22% Similarity=0.149 Sum_probs=42.7
Q ss_pred HHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCc
Q 001584 503 LELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGF 581 (1049)
Q Consensus 503 ~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~~ 581 (1049)
+|.+.+.+.... ++.-+|..|.+++|.++ +. ..++.+.+.++++.+-+|+.+..++.-.--.-++.|
T Consensus 220 i~~L~k~L~d~~-E~pMVRhEaAeALGaIa---~e--------~~~~vL~e~~~D~~~vv~esc~valdm~eyens~~~ 286 (289)
T KOG0567|consen 220 IPSLIKVLLDET-EHPMVRHEAAEALGAIA---DE--------DCVEVLKEYLGDEERVVRESCEVALDMLEYENSKEF 286 (289)
T ss_pred hHHHHHHHHhhh-cchHHHHHHHHHHHhhc---CH--------HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 566777665432 33456888888888876 22 345555566677778888888877765544334443
No 213
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.25 E-value=1.7 Score=49.13 Aligned_cols=118 Identities=15% Similarity=0.133 Sum_probs=83.5
Q ss_pred ChHHHHHHHHHHHHHhhccCCCcccchhhhHhHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhh
Q 001584 817 HFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKN 896 (1049)
Q Consensus 817 ~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~lg~l~~~ 896 (1049)
.-..|-..++|.+...++...+.....+-+.=+..+.+... ...+.+.++|.+...+.+.+..+...++..+..+++.
T Consensus 342 s~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~--~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~ 419 (700)
T KOG2137|consen 342 SQNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTP--PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAES 419 (700)
T ss_pred chhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCC--hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHh
Confidence 34456777888888877754443333333444444444433 2346789999999999999999999999999999988
Q ss_pred cCcchhhHHHHHHHhhhhhhCCCCCChhHHhhHHHHHHHHHHh
Q 001584 897 GGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMV 939 (1049)
Q Consensus 897 ~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~a~~~l~~i~~~ 939 (1049)
....+ .=..+++.+.++ ..+..+..++.|+..|++.++..
T Consensus 420 iD~~~--vk~~ilP~l~~l-~~~tt~~~vkvn~L~c~~~l~q~ 459 (700)
T KOG2137|consen 420 IDVPF--VKQAILPRLKNL-AFKTTNLYVKVNVLPCLAGLIQR 459 (700)
T ss_pred ccHHH--HHHHHHHHhhcc-hhcccchHHHHHHHHHHHHHHHH
Confidence 76322 334566777766 33567889999999999999843
No 214
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=8.1 Score=44.28 Aligned_cols=338 Identities=13% Similarity=0.120 Sum_probs=178.5
Q ss_pred CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhccC-C
Q 001584 35 QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLE-HSAPVRRASANVVSIIAKYAV-P 112 (1049)
Q Consensus 35 ~~~~~l~~il~~~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e-~~~~vr~~~~~~l~~i~~~~~-~ 112 (1049)
+.++.|+.-+.+++-.+-|.-|+..||-.-+++-. +....=.+.+++.|..+ .++.+...+-+.+..+.+++- |
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~----~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYRE----EVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHH----HHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 46777888777777788888888888776433211 11111122333444332 234444444444444433221 0
Q ss_pred C-----------C--------CCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccc---cHHHHHHHHHHhhCC
Q 001584 113 A-----------G--------EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRP---HFADMQALLLKCLQD 170 (1049)
Q Consensus 113 ~-----------~--------~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~---~~~~l~~~l~~~l~~ 170 (1049)
. + .-++.+..+++.+...+-.+|..+++.+..+....|..+.. ..|.-+..+...|.|
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 0 1 23567788888888788899999999999999888765433 235556777788888
Q ss_pred CCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCC---cchh--hhH
Q 001584 171 ETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA---PLLG--DSV 245 (1049)
Q Consensus 171 ~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~---~~~~--~~~ 245 (1049)
....+|..++-.|..+..-.+.-.....|.+.+..++..+..-=..+.--++..|+..+..+.+.+. .+|. .++
T Consensus 178 -srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i 256 (970)
T KOG0946|consen 178 -SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI 256 (970)
T ss_pred -hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence 7777999999999998876654334455666666666654321000111256778888888887642 3442 345
Q ss_pred HHHHHHHHH-hhhCCC--CChHHHH----HHHHHHHHHHhhhH-hhhhhc--CCh--HHHHHHHhhhhccCCCCCCCCCC
Q 001584 246 KSIVHFSLE-VSSSHN--LEPNTRH----QAIQIISWLAKYKY-NSLKKH--KLV--IPILQVMCPLLAESNEAGEDDDL 313 (1049)
Q Consensus 246 ~~l~~~l~~-~~~~~~--~~~~~r~----~a~~~l~~l~~~~~-~~~~~~--~~~--~~il~~l~~~l~~~~~~~~d~~~ 313 (1049)
+.+...+-. ...+++ .-..-|. .++.++..++.... ...... ..+ ..++..++..+...+-..
T Consensus 257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~----- 331 (970)
T KOG0946|consen 257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPA----- 331 (970)
T ss_pred HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcH-----
Confidence 554433211 122210 0122233 34444555543110 000000 011 124556666665543211
Q ss_pred cHHHHHHHHHHHHHHHc-------c-------hhchHHHHHHHHhhhc-CCChhHHhHHHHHHHHHhhcChHHHHHhHHH
Q 001584 314 APDRAAAEVIDTMALNL-------A-------KHVFPPVFEFASVSCQ-NASPKYREAAVTAIGIISEGCAEWMKEKLES 378 (1049)
Q Consensus 314 ~~~~~a~~~l~~l~~~~-------~-------~~~~~~ll~~l~~~l~-~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~ 378 (1049)
.++..+..++..+.... + +.-.|.++-.+..++. ...+..|.|.++++........+.-...+..
T Consensus 332 dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~t 411 (970)
T KOG0946|consen 332 DILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLKT 411 (970)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 23333333333333221 1 1111223333333333 3456789999999877765544444444445
Q ss_pred HHHH
Q 001584 379 VLHI 382 (1049)
Q Consensus 379 i~~~ 382 (1049)
++|.
T Consensus 412 llp~ 415 (970)
T KOG0946|consen 412 LLPS 415 (970)
T ss_pred Hhhh
Confidence 5544
No 215
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.09 E-value=0.2 Score=41.14 Aligned_cols=84 Identities=21% Similarity=0.274 Sum_probs=66.1
Q ss_pred HHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhh
Q 001584 340 EFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYES 419 (1049)
Q Consensus 340 ~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 419 (1049)
..+...+.++..-.|..|+..|..+.+... ......+.++..+...++|+++.|--+|++++..++...+..
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~------- 77 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE------- 77 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH-------
Confidence 344456788888899999999999998765 233457899999999999999999999999999999887542
Q ss_pred HHHHHHHhccCC
Q 001584 420 VLPCILNALEDE 431 (1049)
Q Consensus 420 ll~~l~~~l~~~ 431 (1049)
+++.+++...+.
T Consensus 78 vl~~L~~~y~~~ 89 (92)
T PF10363_consen 78 VLPILLDEYADP 89 (92)
T ss_pred HHHHHHHHHhCc
Confidence 566666554443
No 216
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=94.99 E-value=9.2 Score=44.75 Aligned_cols=52 Identities=6% Similarity=-0.101 Sum_probs=37.1
Q ss_pred HHHHHHHhccC-CCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhcc
Q 001584 546 PFVEAAISGFG-LEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCN 597 (1049)
Q Consensus 546 ~i~~~l~~~l~-~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~ 597 (1049)
.+...+++|+. +.+|.++.-.+.-+...+..-...+.+-++++-..|++...
T Consensus 649 ~~~~~~~qCl~~~~D~~v~~Lv~~~lp~~l~~k~l~~~~~i~~l~~~Lcs~~~ 701 (1697)
T KOG3687|consen 649 LLFRVLLQCLKQESDWKVLKLVLGRLPESLRYKVLIFTSSVDQLCSALCSMLR 701 (1697)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHhHHHHhHHHHhcCCcHHHHHHHHHHHHh
Confidence 35667778877 44788888877777777666666677777777777776653
No 217
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=94.97 E-value=3 Score=47.65 Aligned_cols=107 Identities=19% Similarity=0.261 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHh-------ccCCCCCCcchHHHHHH----hccCCCHHHHHHHHHHHHHh
Q 001584 78 LVKQSLIESITLE-HSAPVRRASANVVSIIAK-------YAVPAGEWPDLLPFLFQ----FSQSEQEEHREVALILFSSL 145 (1049)
Q Consensus 78 ~i~~~ll~~l~~e-~~~~vr~~~~~~l~~i~~-------~~~~~~~w~~ll~~l~~----~l~~~~~~~~~~al~~l~~l 145 (1049)
.+.+.+-+.+... .+..++++.|+++..+.. .+.....|.+.+..+.. ++.. ++....++.....+
T Consensus 129 ~Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K--~khw~~afPL~t~l 206 (552)
T PF14222_consen 129 EFMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSK--PKHWNVAFPLVTTL 206 (552)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhC--cchhhhHHHHHHHH
Confidence 4444555555544 356699999999988643 12222368777666543 3332 45556677777766
Q ss_pred hhhhh-hcccccHH-HHHHHHHHhhCCCCChHHHHHHHHHHHHhhc
Q 001584 146 TETIG-QTFRPHFA-DMQALLLKCLQDETSNRVRIAALKAIGSFLE 189 (1049)
Q Consensus 146 ~~~~~-~~~~~~~~-~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~ 189 (1049)
....+ +.|..+|. .++..+..-+++ . ..|..++.++.+++.
T Consensus 207 LCvS~~e~F~~~W~~~~i~~~~~klKd-k--~~r~~~l~~l~RLlW 249 (552)
T PF14222_consen 207 LCVSPKEFFLSNWLPSLIESLISKLKD-K--ETRPVALECLSRLLW 249 (552)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHhhcCC-h--hhhHHHHHHHHHHHH
Confidence 55444 45666777 577777766766 3 789999999988754
No 218
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=94.94 E-value=0.18 Score=46.40 Aligned_cols=96 Identities=22% Similarity=0.249 Sum_probs=73.7
Q ss_pred HHHhHHHHHHHHHhhcC------------------CCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCCh
Q 001584 372 MKEKLESVLHIVLGALR------------------DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESD 433 (1049)
Q Consensus 372 ~~~~l~~i~~~l~~~l~------------------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 433 (1049)
+.++++.++|.+..... |.-..+|.+|..++..+.+.+...+ .+..++..+..++.| ..
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~--~~~~~~~~v~~GL~D-~~ 79 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRI--DISEFLDRVEAGLKD-EH 79 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--H
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHhhcCC-cH
Confidence 34677888888886542 3346899999999999988765433 255678999999999 78
Q ss_pred HHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhc
Q 001584 434 EVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALE 470 (1049)
Q Consensus 434 ~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~ 470 (1049)
.++.-++..+..++...+..+.+.++.+.+.+...++
T Consensus 80 DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 80 DIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998887777777777777777764
No 219
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.88 E-value=8.6 Score=43.37 Aligned_cols=107 Identities=21% Similarity=0.214 Sum_probs=83.7
Q ss_pred HHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHh-HHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcHHHHh
Q 001584 338 VFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEK-LESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVS 415 (1049)
Q Consensus 338 ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~-l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~ 415 (1049)
=...+..++.++-+.+|-.|+..+..+....++.+.+. +.+++..+..-+. |....||.+.+.+|..+... |....
T Consensus 221 Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n--p~sh~ 298 (1005)
T KOG1949|consen 221 QFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN--PLSHP 298 (1005)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC--ccchh
Confidence 34455667888989999999998888877666665543 5667777776665 67779999999999888766 33456
Q ss_pred hhhhHHHHHHHhccCCChHHHHHHHHHHHHH
Q 001584 416 HYESVLPCILNALEDESDEVKEKSYYALAAF 446 (1049)
Q Consensus 416 ~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l 446 (1049)
.++.++|.+-..+.|+..+||.+++..|..+
T Consensus 299 ~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 299 LLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 6788999988999999999999998888765
No 220
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=94.88 E-value=0.38 Score=44.42 Aligned_cols=130 Identities=15% Similarity=0.103 Sum_probs=93.8
Q ss_pred hhHHHHHHHhhhhhhCCCC----------------CChhHHhhHHHHHHHHHHhCCCCCChhhHHHHHHhhCCCCCcHHh
Q 001584 902 LKYYGDILRGLYPLFGDSE----------------PDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEE 965 (1049)
Q Consensus 902 ~~~~~~~l~~L~~~l~~~~----------------~~~~~~~~a~~~l~~i~~~~~~~~~~~~~l~~~l~~lp~~~d~~e 965 (1049)
.|+++.+++.++.-...+. +--++|..|..++..++..+.+.+++..++..+...+. .+.+.
T Consensus 4 ~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~--D~~DI 81 (169)
T PF08623_consen 4 RPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLK--DEHDI 81 (169)
T ss_dssp TTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTS--S-HHH
T ss_pred HHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcC--CcHHH
Confidence 4677788887776554322 12368999999999999998888888899999999883 34556
Q ss_pred hHHHHHHHHHHHhhCChhhcchhhHHHHHHHHHhcCCCC----------ChHHHHHHHHHHHHHHHHhh-----h-hHHH
Q 001584 966 SMAVYNCISTLVLSSNPQILSLVPELVNLFAEVVVSPEE----------SSEVKSQVGMAFSHLISLYG-----Q-QMQP 1029 (1049)
Q Consensus 966 ~~~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~----------~~~~~~~~~~~l~~l~~~~~-----~-~~~~ 1029 (1049)
...++..+..++...+..+.+++..+++.+...+..+.. ..|..+.+++++..+....| + .|..
T Consensus 82 k~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~~~~~~ 161 (169)
T PF08623_consen 82 KMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSPNKWNE 161 (169)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH-HHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHH
Confidence 677889999998888778888899999999888864321 25788888888888866654 3 6777
Q ss_pred HHhc
Q 001584 1030 LLSN 1033 (1049)
Q Consensus 1030 ~~~~ 1033 (1049)
+|..
T Consensus 162 f~~~ 165 (169)
T PF08623_consen 162 FVEW 165 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 221
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.87 E-value=3 Score=41.44 Aligned_cols=164 Identities=14% Similarity=0.249 Sum_probs=90.5
Q ss_pred hhchhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHhhh-CChHHHHH
Q 001584 661 SSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTE-DDDKDVVA 739 (1049)
Q Consensus 661 ~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~ 739 (1049)
..+.-|++.++..+ .+..++..|.+|.++|..= .+ +.++++-++.-+.+.+.. -.+.+...
T Consensus 193 KELq~YF~kvisal---~dEs~~~~r~aAl~sLr~d------------sG---lhQLvPYFi~f~~eqit~Nl~nl~~Lt 254 (450)
T COG5095 193 KELQMYFDKVISAL---LDESDEQTRDAALESLRND------------SG---LHQLVPYFIHFFNEQITKNLKNLEKLT 254 (450)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccC------------cc---HHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 34555777776665 3445567788877755221 12 233333333222222211 12334444
Q ss_pred HHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhHHHHHHHHhHHHHHHHHhCCChH
Q 001584 740 QACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFA 819 (1049)
Q Consensus 740 ~~~~~l~~~i~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 819 (1049)
.++.....+++. ..-...||+.++++.++..+-.+.- +..+. +.+...+++.++++++..+...+..+.
T Consensus 255 Tv~~m~~sLL~N-~~iFvdPY~hqlmPSilTcliakkl-----g~~p~-----dhe~~alRd~AA~ll~yV~~~F~~~Yk 323 (450)
T COG5095 255 TVVMMYSSLLKN-KYIFVDPYLHQLMPSILTCLIAKKL-----GNVPD-----DHEHYALRDVAADLLKYVFSNFSSSYK 323 (450)
T ss_pred HHHHHHHHHhcC-CceeecHHHHHHHHHHHHHHHHHHh-----cCCCc-----chhHHHHHHHHHHHHHHHHhhhhHhhh
Confidence 455544444431 1124579999999999987765421 11100 233457888899999999988888776
Q ss_pred HHHHHHHHHHHHh-hccCCCcccchhhhHhHHHHH
Q 001584 820 PIFAKLFDPLMKF-AKSSRPLQDRTMVVATLAEVA 853 (1049)
Q Consensus 820 ~~~~~l~~~l~~~-l~~~~~~~~r~~a~~~l~~l~ 853 (1049)
..-+++...+++. +......+....|+.+++-+-
T Consensus 324 tLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ 358 (450)
T COG5095 324 TLKPRVTRTLLKAFLDREKTESTQYGALKGLSILS 358 (450)
T ss_pred hhchHHHHHHHHHHHhcccccchhhhhhhhhhhhc
Confidence 6666766666664 433333344556666665543
No 222
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.86 E-value=2.3 Score=44.14 Aligned_cols=147 Identities=13% Similarity=0.072 Sum_probs=110.1
Q ss_pred CCChhHHhHHHHHHHHHhh--cChHHHHHhHHHHHHHHHhhcCCC-ChhHHHHHHHHHHHhHhhhcHH-HHhhhhhHHHH
Q 001584 348 NASPKYREAAVTAIGIISE--GCAEWMKEKLESVLHIVLGALRDP-EQFVRGAASFALGQFAEYLQPE-IVSHYESVLPC 423 (1049)
Q Consensus 348 ~~~~~~r~~al~~l~~i~~--~~~~~~~~~l~~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~ll~~ 423 (1049)
..+|..--+++.-+..... .......++-..+...+.+||+-. -.-|...|..+...+.+.++++ +.+.+.-..+.
T Consensus 22 ~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~G 101 (307)
T PF04118_consen 22 SSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPG 101 (307)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHH
Confidence 4567777666666655555 222222233345667788888742 2358888999999888888753 45566667788
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhh
Q 001584 424 ILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQA 494 (1049)
Q Consensus 424 l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~ 494 (1049)
++..+....-.||......+....-..+..+.|.++.++..++..+.+...+....++..+..+....++.
T Consensus 102 Lfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~ 172 (307)
T PF04118_consen 102 LFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK 172 (307)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh
Confidence 88888877788888888888888777777888999999999999999888899999999999998887765
No 223
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.86 E-value=7.7 Score=42.71 Aligned_cols=174 Identities=16% Similarity=0.142 Sum_probs=106.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---CCcHHHHHHHHh--cCCChhHHHHHHHHHHHhhhhhccCCC--HHHH
Q 001584 4 SLELLLIQFLMPDNDARRQAEDQIKRLAKD---PQVVPALVQHLR--TAKTPNVRQLAAVLLRKKITGHWAKLS--PQLK 76 (1049)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~a~~~L~~~~~~---p~~~~~l~~il~--~~~~~~~R~~a~~~l~~~i~~~w~~~~--~~~~ 76 (1049)
...++++..+......||...+-..-..++ .+|...+-.++. +++...-|-+ .++++.+.-.-++.+ .+..
T Consensus 12 s~~~if~k~Q~s~aGhrk~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil--~fl~~f~~Y~~~~dpeg~~~V 89 (885)
T COG5218 12 SMQLIFNKIQQSSAGHRKSLAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRIL--SFLKRFFEYDMPDDPEGEELV 89 (885)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHH--HHHHHHHHhcCCCChhhhHHH
Confidence 455667777666666776655444333322 234444444443 2333333322 234444432222222 2455
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCC--CCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhccc
Q 001584 77 QLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVP--AGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFR 154 (1049)
Q Consensus 77 ~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~--~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~ 154 (1049)
..+..++++++.+ ++..||...+++++.+...-.+ +.-...++..+.+-+-+.++.+|..|+.+|..+-+.-.
T Consensus 90 ~~~~~h~lRg~es-kdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~---- 164 (885)
T COG5218 90 AGTFYHLLRGTES-KDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL---- 164 (885)
T ss_pred HHHHHHHHhcccC-cchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC----
Confidence 6666677777775 8999999999999998764322 33445666777777777788999999999998865433
Q ss_pred ccHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 001584 155 PHFADMQALLLKCLQDETSNRVRIAALKAI 184 (1049)
Q Consensus 155 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l 184 (1049)
..-+.+..++...++++++.+||..|+.-+
T Consensus 165 neen~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 165 NEENRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred ChHHHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 223445566777777669999999988654
No 224
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.82 E-value=1.6 Score=43.32 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=67.5
Q ss_pred HHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhcc----CCCcc-----cchhhhHhHHHHHhhcCCchhhcHhhhHHH
Q 001584 800 MDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKS----SRPLQ-----DRTMVVATLAEVARDMGSPIAAYVDRVMPL 870 (1049)
Q Consensus 800 ~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~----~~~~~-----~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~ 870 (1049)
+.++..+..++.+.-.--..||+.+++|.++.++-. +.+.. .|-.|...++-++..++.......|.+...
T Consensus 253 LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrT 332 (450)
T COG5095 253 LTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRT 332 (450)
T ss_pred HHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHH
Confidence 445555556655443334559999999998886521 12222 677888899999988887766677888888
Q ss_pred HHHhcCCCC--hHhHHHHHHHHHHHHhhc
Q 001584 871 VLKELASPD--AMNRRNAAFCVGELCKNG 897 (1049)
Q Consensus 871 l~~~l~~~~--~~vr~~a~~~lg~l~~~~ 897 (1049)
+++.+-|.+ .+..-.|..|+..+....
T Consensus 333 llKafLD~~k~~sT~YGalkgls~l~ke~ 361 (450)
T COG5095 333 LLKAFLDREKTESTQYGALKGLSILSKEV 361 (450)
T ss_pred HHHHHHhcccccchhhhhhhhhhhhchhh
Confidence 888765543 456677888888876544
No 225
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.82 E-value=1.9 Score=48.89 Aligned_cols=136 Identities=13% Similarity=0.220 Sum_probs=88.7
Q ss_pred CCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCC
Q 001584 114 GEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTND 193 (1049)
Q Consensus 114 ~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~ 193 (1049)
.....++|.|...+++.+..+++.++..+..+.+.++-. ..-..++|.+.+....+.+..|+..++-|+..+++..+.
T Consensus 385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~--~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~ 462 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVP--FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDK 462 (700)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHH--HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHH
Confidence 345668889999998888889999999999888877622 223446777776654447888999999999998866532
Q ss_pred hhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhhhCC
Q 001584 194 GAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSH 259 (1049)
Q Consensus 194 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~ 259 (1049)
. ..++.++.. .++.+..++........+...++-..+.-..-...++++.++.+.-.+
T Consensus 463 ---~----~v~d~~lpi-~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 463 ---A----AVLDELLPI-LKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred ---H----HhHHHHHHH-HHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 1 122222222 234566788888888887777654433312223445666665554433
No 226
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.79 E-value=5.9 Score=41.98 Aligned_cols=169 Identities=11% Similarity=0.180 Sum_probs=102.0
Q ss_pred cchHHHHHHHHhccCCCCchhhH-HHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCchhhhccCCCC
Q 001584 542 PILPPFVEAAISGFGLEFSELRE-YTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGV 620 (1049)
Q Consensus 542 ~~~~~i~~~l~~~l~~~~~~~r~-~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1049)
..++++++.++...+...+..|+ ..+.+++.++..++..+.++++.++..++...-.= +.++ +
T Consensus 67 ~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~M------I~~d----~------ 130 (319)
T PF08767_consen 67 NFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPM------INKD----F------ 130 (319)
T ss_dssp HTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHH------HSST----S------
T ss_pred HHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH------HHhh----h------
Confidence 44566666666555555566665 47889999999999999999999988887543100 0000 0
Q ss_pred CCCcchhhcccccceeeeccchhhHHHHHHHHHHHHHHhhhhchh----hHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001584 621 SSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAP----FLEESLKILVRHASYFHEDVRYQAVFALKNI 696 (1049)
Q Consensus 621 ~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l 696 (1049)
+...+-+..-...+..+...+...+.. .+..+++.+.-.+.+.+.+|...+..++..+
T Consensus 131 ------------------~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~l 192 (319)
T PF08767_consen 131 ------------------EEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLEL 192 (319)
T ss_dssp ------------------SSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHH
T ss_pred ------------------hhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 001124566667777777766554432 3566666666667889999999999999999
Q ss_pred HHHHHHhhccCCCChH----HHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH
Q 001584 697 LTAAHAIFQSHNEGPA----KAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIIN 750 (1049)
Q Consensus 697 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~i~ 750 (1049)
+..+.. .+++ ..+.++-.++..++..+.+...+.........+..++.
T Consensus 193 l~~~~~------~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 193 LNNVSK------TNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR 244 (319)
T ss_dssp HHHHHH-------SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred HHHHHh------cCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 887663 1233 33444444555555555444344334444444555543
No 227
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=94.76 E-value=6.6 Score=41.48 Aligned_cols=113 Identities=15% Similarity=0.158 Sum_probs=71.4
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcc-----CCChHHHHHHHHHHHHHHHhhc
Q 001584 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALE-----DESDEVKEKSYYALAAFCEDMG 451 (1049)
Q Consensus 377 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~-----~~~~~v~~~a~~~l~~l~~~~~ 451 (1049)
++++..+..++.+.+.....++.-++|.|+..-...+.-.-++++..++..+. |.+-+++.+++++|.++.--.+
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 45889999999988888888999999999876432222111345555555443 4456788999999999864332
Q ss_pred cccccch-HHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHH
Q 001584 452 EEILPFL-DPLMGKLLAALENSPRNLQETCMSAIGSVAAA 490 (1049)
Q Consensus 452 ~~l~~~~-~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~ 490 (1049)
..- .++ ..+.+.++..+....+.+.-..+.++.-+...
T Consensus 394 nka-~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~ 432 (604)
T KOG4500|consen 394 NKA-HFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDS 432 (604)
T ss_pred chh-hccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhc
Confidence 211 111 13455555556666666666666666555443
No 228
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.3 Score=52.68 Aligned_cols=125 Identities=17% Similarity=0.227 Sum_probs=91.3
Q ss_pred hchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcH
Q 001584 333 HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQP 411 (1049)
Q Consensus 333 ~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~ 411 (1049)
.++..+++. ..++.|..+|++|+.+||.++-.-+ ..++..++.|. +.++.||.....+||-.|..-+.
T Consensus 551 ~vv~~lLh~---avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~ 619 (926)
T COG5116 551 GVVSTLLHY---AVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD 619 (926)
T ss_pred hhHhhhhee---ecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc
Confidence 334444443 2567788899999999999875422 34455555555 46789999999999988877654
Q ss_pred HHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCH
Q 001584 412 EIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPR 474 (1049)
Q Consensus 412 ~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~ 474 (1049)
.. .+..|-..+.|++.-||..|+-+++-+.-.+.+++.|-+..|...+.+.+.+.+.
T Consensus 620 ~~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 620 KV------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred HH------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhH
Confidence 22 2222333445778889999999999999999889999999999998888876544
No 229
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.58 E-value=0.48 Score=49.20 Aligned_cols=147 Identities=14% Similarity=0.187 Sum_probs=97.4
Q ss_pred CCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcc------cccHHHHHHHHHHhhCC-------CCChHHHHHH
Q 001584 114 GEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF------RPHFADMQALLLKCLQD-------ETSNRVRIAA 180 (1049)
Q Consensus 114 ~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~------~~~~~~l~~~l~~~l~~-------~~~~~vr~~a 180 (1049)
..|+-++|.++.++.+.++..|..|+.++..+.+..+... ......+.+.+.+++.. +.+..+-..|
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~a 194 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAA 194 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Confidence 5899999999999999999999999999999998766432 12234445566666651 1556677788
Q ss_pred HHHHHHhhcccCC---hhhHHHHHhhhHH-HHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhh
Q 001584 181 LKAIGSFLEFTND---GAEVVKFREFIPS-ILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVS 256 (1049)
Q Consensus 181 ~~~l~~~~~~~~~---~~~~~~~~~~~~~-ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~ 256 (1049)
..|+..++..... ......+...+-. +++.+........++.+...++.+..++...+-..-.+++.++..+.+++
T Consensus 195 y~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l 274 (282)
T PF10521_consen 195 YPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQIL 274 (282)
T ss_pred HHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 8888888664321 1111112222222 33332222222246677777888888888777777888888888888888
Q ss_pred hCCC
Q 001584 257 SSHN 260 (1049)
Q Consensus 257 ~~~~ 260 (1049)
.++.
T Consensus 275 ~npf 278 (282)
T PF10521_consen 275 ENPF 278 (282)
T ss_pred cCCC
Confidence 7764
No 230
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.43 E-value=9.2 Score=41.69 Aligned_cols=182 Identities=15% Similarity=0.175 Sum_probs=104.5
Q ss_pred CChhHHhHHHHHHHHHhhc---Ch--HHHHHhHHHHHHHHHhhcCC------C-ChhHHHHHHHHHHHhHhhhcHHHHhh
Q 001584 349 ASPKYREAAVTAIGIISEG---CA--EWMKEKLESVLHIVLGALRD------P-EQFVRGAASFALGQFAEYLQPEIVSH 416 (1049)
Q Consensus 349 ~~~~~r~~al~~l~~i~~~---~~--~~~~~~l~~i~~~l~~~l~d------~-~~~vr~~a~~~l~~l~~~~~~~~~~~ 416 (1049)
.+-..|..|...|.....+ .+ ..+.++++-++..+..-+.. | +.++-..|+++++.+.... .+...
T Consensus 5 ~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~--~i~~~ 82 (372)
T PF12231_consen 5 SDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHP--EIVST 82 (372)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccH--HHHhh
Confidence 3344555555555443332 22 34455566666666655433 3 6788889999999887552 22221
Q ss_pred -----hhhHHHHHHHhccCCC--hHHHHHHHHHHHHHHHhhcccc-cc-chHHHHHHHHHhhc-CCCHhHHHHHHHHHHH
Q 001584 417 -----YESVLPCILNALEDES--DEVKEKSYYALAAFCEDMGEEI-LP-FLDPLMGKLLAALE-NSPRNLQETCMSAIGS 486 (1049)
Q Consensus 417 -----~~~ll~~l~~~l~~~~--~~v~~~a~~~l~~l~~~~~~~l-~~-~~~~ll~~l~~~l~-~~~~~v~~~~~~~l~~ 486 (1049)
...++...+..+.+++ +.+....+++|.. ++++..+ .. ....++..+...-+ -+...+-...+.++-.
T Consensus 83 l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ 160 (372)
T PF12231_consen 83 LSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKR 160 (372)
T ss_pred CChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence 2236667777776653 4566666666653 3343322 22 22334444444433 3456677888888888
Q ss_pred HHHHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhch
Q 001584 487 VAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGR 537 (1049)
Q Consensus 487 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~ 537 (1049)
+....+..+......-+|.+...+-.. ...+|.+|+.+...+...+|+
T Consensus 161 ll~q~p~~M~~~~~~W~~~l~~~l~~~---~k~ir~~a~~l~~~~~~~l~~ 208 (372)
T PF12231_consen 161 LLSQFPQQMIKHADIWFPILFPDLLSS---AKDIRTKAISLLLEAKKCLGP 208 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc---chHHHHHHHHHHHHHHHHhCh
Confidence 888888877777776666665555432 234566666666666666654
No 231
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.26 E-value=6.7 Score=39.43 Aligned_cols=199 Identities=19% Similarity=0.165 Sum_probs=111.5
Q ss_pred cCCCHHHHHHHHHHHHHHhcCC-CcHHHHHHHHhc---CCChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHh
Q 001584 13 LMPDNDARRQAEDQIKRLAKDP-QVVPALVQHLRT---AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESIT 88 (1049)
Q Consensus 13 ~s~d~~~r~~a~~~L~~~~~~p-~~~~~l~~il~~---~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~ 88 (1049)
...+++.....-+.|.++..+. ...+..++++.. ......+..+..++-+..++....+ +..+..+....++.-.
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~~~ 89 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLILRIPS 89 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhccc
Confidence 3467778888888887776555 555556666543 3334444455444444433322222 3333333332222221
Q ss_pred ----hcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhc-cCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHH
Q 001584 89 ----LEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFS-QSEQEEHREVALILFSSLTETIGQTFRPHFADMQAL 163 (1049)
Q Consensus 89 ----~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l-~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~ 163 (1049)
.+......-..+..+..+.... |+ .|+++++.+.+++ ++.++..+..+++.+..+++.-.-.+...| ..
T Consensus 90 ~~~~~~~~~~~~i~~a~s~~~ic~~~-p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w----~v 163 (234)
T PF12530_consen 90 SFSSKDEFWECLISIAASIRDICCSR-PD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAW----KV 163 (234)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHhC-hh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHH----HH
Confidence 1233445555566777777664 54 9999999999999 777788888999999999855443333333 34
Q ss_pred HHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHH
Q 001584 164 LLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEED 221 (1049)
Q Consensus 164 l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 221 (1049)
+.+-+..+..+.+-..-+..+ .++....- +...+..+...++..+.+.....+.+
T Consensus 164 l~~~l~~~~rp~v~~~l~~l~-~l~~~~~~--~~e~~~~~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 164 LQKKLSLDYRPLVLKSLCSLF-ALVPQGAV--DSEEYEELKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred HHHhcCCccchHHHHHHHHHH-HHhccccC--ChhhhhHHHHHHHHHHHhhccccccc
Confidence 444444435555544433322 23333221 12334556667777777766655433
No 232
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.23 E-value=4.2 Score=44.58 Aligned_cols=162 Identities=16% Similarity=0.308 Sum_probs=98.8
Q ss_pred hchhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHhhhC---ChHHHH
Q 001584 662 SYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTED---DDKDVV 738 (1049)
Q Consensus 662 ~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~ 738 (1049)
...-|+.++.+.+.. .++..|..|..+|.+ +.+ +..+++.+...+-+..... .+-..+
T Consensus 204 ElQlYy~~It~a~~g----~~~~~r~eAL~sL~T------------DsG---L~~LlPyFv~fIae~vs~ni~~~nL~lL 264 (576)
T KOG2549|consen 204 ELQLYYKEITEACTG----SDEPLRQEALQSLET------------DSG---LQQLLPYFVTFIAEGVSVNIVQNNLELL 264 (576)
T ss_pred HHHHHHHHHHHHHhc----CCHHHHHHHHHhhcc------------Ccc---HHHHHHHHHHHHhhheeeccccccHHHH
Confidence 345578887777654 556678777775521 111 3333333333332222111 122222
Q ss_pred HHHHHHHHHHHHHhCCc-ccHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhHHHHHHHHhHHHHHHHHhCCC
Q 001584 739 AQACTSIVEIINDYGYM-AVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPH 817 (1049)
Q Consensus 739 ~~~~~~l~~~i~~~g~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 817 (1049)
..+++.+..+++ .+. .+.+|+..+++.++..+-.+.-|..-+ .+..+.+++.+++++..+++.++..
T Consensus 265 ~~lm~m~rSLl~--Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~----------~dnhwaLRDfAA~ll~~i~k~f~~~ 332 (576)
T KOG2549|consen 265 IYLMRMVRSLLD--NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPE----------LDNHWALRDFAARLLAQICKNFSTL 332 (576)
T ss_pred HHHHHHHHHHhc--CCccchhhHHHHHhhHHHHhhhhhhccCCcc----------ccchHHHHHHHHHHHHHHHHhhhhH
Confidence 333333333332 122 457899999999998777665543221 4578999999999999999999987
Q ss_pred hHHHHHHHHHHHHHhhccC-CCcccchhhhHhHHHHHh
Q 001584 818 FAPIFAKLFDPLMKFAKSS-RPLQDRTMVVATLAEVAR 854 (1049)
Q Consensus 818 ~~~~~~~l~~~l~~~l~~~-~~~~~r~~a~~~l~~l~~ 854 (1049)
....-.+++..+.+.+.+. .+......++..|..+..
T Consensus 333 y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 333 YNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGH 370 (576)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhh
Confidence 7776677888888876655 455566677777776643
No 233
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.23 E-value=20 Score=44.90 Aligned_cols=359 Identities=15% Similarity=0.144 Sum_probs=180.4
Q ss_pred HhhcCCHHHHHHHHHHHHHHHhccCCCCCC-----cchHHHHHHhccC----CCHHHHHHHHHHHHHhhhhhh------h
Q 001584 87 ITLEHSAPVRRASANVVSIIAKYAVPAGEW-----PDLLPFLFQFSQS----EQEEHREVALILFSSLTETIG------Q 151 (1049)
Q Consensus 87 l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w-----~~ll~~l~~~l~~----~~~~~~~~al~~l~~l~~~~~------~ 151 (1049)
|...++..||-.++.|++.|.+...|+..+ .+++..++..+.. .++... .-+.++..+..... +
T Consensus 58 ~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~-r~~~lletl~~~k~~l~~~l~ 136 (1266)
T KOG1525|consen 58 LLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFK-RYFYLLETLAKVKFCLLMLLE 136 (1266)
T ss_pred HhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchh-hHHHHHHHHHHhHHHheeecc
Confidence 334589999999999999999877665333 3344444433321 223221 12334444433321 1
Q ss_pred cccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 001584 152 TFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFD 231 (1049)
Q Consensus 152 ~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~ 231 (1049)
.-.+.+.++..++...+.++....|-. -...+..++...+.- -..++..++.- ++ .+.++....+...=.
T Consensus 137 d~~e~~~~~f~~f~d~~~~~~~~~v~~-~~~i~~~li~e~d~v-----~~e~L~~ll~~---lv-~~~~~~~~~a~~la~ 206 (1266)
T KOG1525|consen 137 DCQELVHELFRTFFDLARKGHPKKVFN-MLDIAIMLITEEDTV-----QSELLDVLLEN---LV-KPGRDTIKEADKLAS 206 (1266)
T ss_pred chHHHHHHHHHHHHHHHhccccHHHHH-HHHHHHHHHHhhccc-----hHHHHHHHHHH---hc-cCCCCccHHHHHHHH
Confidence 113445666777777776522222322 223333333222110 01122222221 22 222333333333333
Q ss_pred HHhccCCcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCC
Q 001584 232 ELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDD 311 (1049)
Q Consensus 232 ~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~ 311 (1049)
.+++..+.-+.+.+.+.+...+..... .-...+....+++..+-...|. .+-.+++.+-..|...++
T Consensus 207 ~li~~~a~~~~~~i~~f~~~~~~~~~s--~~~~~~~~~he~i~~L~~~~p~------ll~~vip~l~~eL~se~~----- 273 (1266)
T KOG1525|consen 207 DLIERCADNLEDTIANFLNSCLTEYKS--RQSSLKIKYHELILELWRIAPQ------LLLAVIPQLEFELLSEQE----- 273 (1266)
T ss_pred HHHHHhhhhhchhHHHHHHHHHhhccc--cccchhhHHHHHHHHHHHhhHH------HHHHHHHHHHHHHhcchH-----
Confidence 334443333334444433332221111 1122333334444444333232 233455555544444333
Q ss_pred CCcHHHHHHHHHHHHHHHcch---hchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcC
Q 001584 312 DLAPDRAAAEVIDTMALNLAK---HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR 388 (1049)
Q Consensus 312 ~~~~~~~a~~~l~~l~~~~~~---~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~ 388 (1049)
..|..|...++.+....+. +..+.++......+.+....+|.+++.....+.-..+...... .+...+.....
T Consensus 274 --~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~--~~~~~l~~~~~ 349 (1266)
T KOG1525|consen 274 --EVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKAS--TILLALRERDL 349 (1266)
T ss_pred --HHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHH--HHHHHHHhhcC
Confidence 6788888888887765542 3345566665566778888899998887776655544332221 22333333444
Q ss_pred CCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh-------ccccccchHHH
Q 001584 389 DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM-------GEEILPFLDPL 461 (1049)
Q Consensus 389 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~-------~~~l~~~~~~l 461 (1049)
|++.++|..+......+... ...+.+.++..+.+.+.|...+||..|+..|..+-++. +..+.+-+..|
T Consensus 350 D~~~rir~~v~i~~~~v~~~----~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swI 425 (1266)
T KOG1525|consen 350 DEDVRVRTQVVIVACDVMKF----KLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWI 425 (1266)
T ss_pred ChhhhheeeEEEEEeehhHh----hhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCccccccccccc
Confidence 55555544333222222221 12333447888888999999999999999999998852 12344555555
Q ss_pred HHHHHHhhcCCCHhHH
Q 001584 462 MGKLLAALENSPRNLQ 477 (1049)
Q Consensus 462 l~~l~~~l~~~~~~v~ 477 (1049)
-..++.++...+...|
T Consensus 426 p~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 426 PDKLLHLYYENDLDDR 441 (1266)
T ss_pred chhHHhhHhhccccHH
Confidence 6666666665544444
No 234
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.05 E-value=9.6 Score=40.42 Aligned_cols=135 Identities=13% Similarity=0.195 Sum_probs=90.1
Q ss_pred HHhHHHHHHHHhCCC----hHHHHHHHHHHHHHhhccC--CCcccchhhhHhHHHHHhhcCCchhh----cHhhhHHHHH
Q 001584 803 VSDLLPAFAKSMGPH----FAPIFAKLFDPLMKFAKSS--RPLQDRTMVVATLAEVARDMGSPIAA----YVDRVMPLVL 872 (1049)
Q Consensus 803 ~~~~l~~l~~~~~~~----~~~~~~~l~~~l~~~l~~~--~~~~~r~~a~~~l~~l~~~~~~~~~~----~~~~i~~~l~ 872 (1049)
+..++.++++.+|+. ....++.++...+.+++++ +.++.|..-+..+..+++++...+.. ....++..++
T Consensus 92 vL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~ 171 (319)
T PF08767_consen 92 VLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIV 171 (319)
T ss_dssp HHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHH
Confidence 345556666666654 4455556666666666553 23678899999999999988665432 3567888888
Q ss_pred HhcCCCChHhHHHHHHHHHHHHhhcCc---c-----hhhHHHHHHHhhhhhhCCCCCChhHHhhHHHHHHHHHH
Q 001584 873 KELASPDAMNRRNAAFCVGELCKNGGE---S-----ALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIM 938 (1049)
Q Consensus 873 ~~l~~~~~~vr~~a~~~lg~l~~~~~~---~-----~~~~~~~~l~~L~~~l~~~~~~~~~~~~a~~~l~~i~~ 938 (1049)
-++++.+.++...++.++..++..... . ++.|+-.+++.+..++.++. .....+..+..+.+++.
T Consensus 172 wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~-Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 172 WGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSD-HKSGFKLQSQILSNLFR 244 (319)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT--GGGHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHH
Confidence 889999999999999999999875433 2 34456666666656665433 34444455566666654
No 235
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=5.5 Score=49.74 Aligned_cols=256 Identities=12% Similarity=0.133 Sum_probs=140.0
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcc
Q 001584 161 QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (1049)
Q Consensus 161 ~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (1049)
+..+.+-+.. .++.++..|++.+..++.....+ ....++|.......+++.+.+..+|.....++..+.....+.
T Consensus 43 l~~I~kkL~K-kD~~TK~KaL~eL~eli~~~~~e----~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~ 117 (1312)
T KOG0803|consen 43 LDIIVKKLLK-RDETTKIKALQELSELIDTSDTE----ELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKK 117 (1312)
T ss_pred HHHHHHHHhc-cChHHHHHHHHhHHHhcccccch----HHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666 78999999999999998876432 233467888888888888999999999999999998888888
Q ss_pred hhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHh-hhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHH
Q 001584 241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAK-YKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAA 319 (1049)
Q Consensus 241 ~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~-~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a 319 (1049)
+.+++..+++.++-...+ .+-.+...|...+..... .+...+.. ..-+.+...+...+....++...+ .+..+
T Consensus 118 lsp~LK~li~~wl~~~~d--~~~~vs~aa~~sf~~~f~~ek~~~v~~-~c~~~i~~~~~~~~~~~~~~slSd---~~~~s 191 (1312)
T KOG0803|consen 118 LSPFLKSLIPPWLGGQFD--LDYPVSEAAKASFKDGFAEEKDRHVWF-KCDPEIFYLVTEILVKETPDSLSD---LRTLS 191 (1312)
T ss_pred hhHHHHhhhhhhhheecc--cchHHHHHHHHHHHhhcChhhhHHHHH-HhhHHHHHHHHHHHhccCccccch---hhhcc
Confidence 888888888877643332 244444444433332211 11111110 122334444444433322211111 01111
Q ss_pred HHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcC--hHH---HHHhHHHH--HHHHHhhcCCCCh
Q 001584 320 AEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC--AEW---MKEKLESV--LHIVLGALRDPEQ 392 (1049)
Q Consensus 320 ~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~--~~~---~~~~l~~i--~~~l~~~l~d~~~ 392 (1049)
.+.+ ...-.++...++.++..+.... .+. ..+....+ -..++..++++.|
T Consensus 192 ~Ee~-----------------------E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~ 248 (1312)
T KOG0803|consen 192 SEEL-----------------------ESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSP 248 (1312)
T ss_pred hHHH-----------------------HHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCc
Confidence 1111 0001111112222222222110 000 11112222 3577888999999
Q ss_pred hHHHHHHHHHHHhHhhhcHHHHh-hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhc
Q 001584 393 FVRGAASFALGQFAEYLQPEIVS-HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG 451 (1049)
Q Consensus 393 ~vr~~a~~~l~~l~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 451 (1049)
.++.+...++..++.....-..+ .-..+.+.+.....+.+ .|......++..+...++
T Consensus 249 ~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~p 307 (1312)
T KOG0803|consen 249 SIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSLP 307 (1312)
T ss_pred chhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccccccc-cccHHHHHHHHHHhhhhh
Confidence 99999999999998887654222 23334455555555544 555555555554444444
No 236
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=93.79 E-value=10 Score=40.92 Aligned_cols=222 Identities=12% Similarity=0.097 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhh----h-h
Q 001584 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTE----T-I 149 (1049)
Q Consensus 75 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~----~-~ 149 (1049)
.-..+.+.+...+.+|.+.........+++.-.... ....=+.++..+...+.+..+.+|..-+..++.++. . .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 456777788888889999988888888877655433 112336678888888988888899999999998875 1 2
Q ss_pred hhcccccHHHHHHHHHHhhCCCCChHHH----HHHHHHHHHhhcccCChhhHH--HHHhhh----HHHHHHHHHHhhc-C
Q 001584 150 GQTFRPHFADMQALLLKCLQDETSNRVR----IAALKAIGSFLEFTNDGAEVV--KFREFI----PSILNVSRQCLAS-G 218 (1049)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~l~~~~~~~vr----~~a~~~l~~~~~~~~~~~~~~--~~~~~~----~~ll~~l~~~l~~-~ 218 (1049)
.....+..+.+...+.+.... +.+... ..|.-.+. ......+..... ....+. |.++-. .+..+. .
T Consensus 98 ~~~~~~~~~~L~~~~~~~~~~-p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~-~kvyskl~ 174 (339)
T PF12074_consen 98 LKFAEPFLPKLLQSLKEASAN-PLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLS-EKVYSKLA 174 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcC-HHHHhccC
Confidence 222334556666666666665 332211 11111111 100000000000 000000 111100 011222 4
Q ss_pred CHHHHHHHHHHHHHHhccCCcchhhhH-HHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHH
Q 001584 219 EEDVAVIAFEIFDELIESPAPLLGDSV-KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVM 297 (1049)
Q Consensus 219 ~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l 297 (1049)
+++.....++.+..+............ ..+.+.++.++-++.....+|..|.+.+..+....|..+ ...++..+
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l-----~~~li~~l 249 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPELL-----SKSLISGL 249 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHH
Confidence 556666777777777665544333332 445555555555555678999999999998876666532 23466777
Q ss_pred hhhhccCC
Q 001584 298 CPLLAESN 305 (1049)
Q Consensus 298 ~~~l~~~~ 305 (1049)
..++...+
T Consensus 250 ~~~l~~~~ 257 (339)
T PF12074_consen 250 WKWLSSSE 257 (339)
T ss_pred HHHHHhcc
Confidence 77776544
No 237
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=93.78 E-value=0.75 Score=42.55 Aligned_cols=124 Identities=19% Similarity=0.242 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcCh----------------HHHHHhHHHH
Q 001584 316 DRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA----------------EWMKEKLESV 379 (1049)
Q Consensus 316 ~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~----------------~~~~~~l~~i 379 (1049)
+...+.++..++...-..-||.+++.+.+.+++ +.......+..|..+.+... +.+..+.+.+
T Consensus 5 ~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i 83 (148)
T PF08389_consen 5 RNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDI 83 (148)
T ss_dssp HHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHH
Confidence 445556666666554344577777777776665 46667777777777766432 1233445566
Q ss_pred HHHHHhhcCCCC----hhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHH
Q 001584 380 LHIVLGALRDPE----QFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYAL 443 (1049)
Q Consensus 380 ~~~l~~~l~d~~----~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l 443 (1049)
++.+.+.+.... ..+...++.+++.+..+.+...-.. ..+++.+++.+++++ .+..|+.+|
T Consensus 84 ~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 84 LEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 666666665322 7889999999999999876533222 458999999996654 477787775
No 238
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.74 E-value=0.25 Score=46.13 Aligned_cols=94 Identities=21% Similarity=0.352 Sum_probs=79.0
Q ss_pred hhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHH---hhh
Q 001584 417 YESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAA---AEQ 493 (1049)
Q Consensus 417 ~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~---~~~ 493 (1049)
+...+|.+..+|.+.+-..+.-|-..+..++...++.+.|.+++++..+...+...+.++.+.++.++..+... +|.
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~ 191 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGA 191 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccch
Confidence 34578888888887765667778888888888888999999999999999999999999999999999887664 458
Q ss_pred hccccHHHHHHHHHHHH
Q 001584 494 AFIPYAERVLELLKIFM 510 (1049)
Q Consensus 494 ~~~~~~~~~~~~l~~~l 510 (1049)
.+.|||.+++|.+..+=
T Consensus 192 aLVPfYRQlLp~~n~~k 208 (262)
T KOG3961|consen 192 ALVPFYRQLLPVLNTFK 208 (262)
T ss_pred hhhhHHHHhhhhhhhhc
Confidence 89999999999886543
No 239
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.62 E-value=26 Score=43.98 Aligned_cols=95 Identities=17% Similarity=0.197 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhccC
Q 001584 435 VKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTN 514 (1049)
Q Consensus 435 v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~ 514 (1049)
|-.....++.++....+++ +.++...++....+...+.|-.++..+..+....|+...+.+++.+|.+-+++...+
T Consensus 1520 v~~~li~~i~~~~~a~~~d----~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~ 1595 (1621)
T KOG1837|consen 1520 VSKLLIAEIASDSVADKDD----LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDED 1595 (1621)
T ss_pred HHHHHHHHHHhhccCChhh----hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhH
Confidence 4455555555554444444 444555555555677889999999999999999999999999999999999996543
Q ss_pred hhhhhhHHHHHHHHHHHHHhhc
Q 001584 515 DEDLRSRARATELLGLVAESVG 536 (1049)
Q Consensus 515 ~~~~~~r~~a~~~l~~l~~~~~ 536 (1049)
+ .+...+...+..+-...|
T Consensus 1596 ~---~Ve~~~q~li~q~e~~lG 1614 (1621)
T KOG1837|consen 1596 D---EVECLCQKLIRQLEEVLG 1614 (1621)
T ss_pred H---HHHHHHHHHHHHHHHHhc
Confidence 2 232233344444444444
No 240
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.59 E-value=5.9 Score=46.58 Aligned_cols=140 Identities=18% Similarity=0.218 Sum_probs=81.5
Q ss_pred hhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhc-ChHH-------HHHhHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 001584 332 KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEG-CAEW-------MKEKLESVLHIVLGALRDPEQFVRGAASFALG 403 (1049)
Q Consensus 332 ~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~-~~~~-------~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~ 403 (1049)
...+..+++.+..-........|.+++.+++.+... |... ....++.+...+-.+.++.+...+..++++||
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 444555555443222234567899999999998873 3211 12223333344444444556667788999999
Q ss_pred HhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcC--CCHhHHHHHH
Q 001584 404 QFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN--SPRNLQETCM 481 (1049)
Q Consensus 404 ~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~--~~~~v~~~~~ 481 (1049)
++..... ... +.+.+. +-...+..+|..|+++|..+....+.. +.+.+++.+.+ .+.++|..|+
T Consensus 472 N~g~~~~---i~~---l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~-------v~~~l~~i~~n~~e~~EvRiaA~ 537 (574)
T smart00638 472 NAGHPSS---IKV---LEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRK-------VQEVLLPIYLNRAEPPEVRMAAV 537 (574)
T ss_pred ccCChhH---HHH---HHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchH-------HHHHHHHHHcCCCCChHHHHHHH
Confidence 8765421 122 222222 223345789999999999888766653 33344444443 4577888888
Q ss_pred HHHH
Q 001584 482 SAIG 485 (1049)
Q Consensus 482 ~~l~ 485 (1049)
..+-
T Consensus 538 ~~lm 541 (574)
T smart00638 538 LVLM 541 (574)
T ss_pred HHHH
Confidence 6554
No 241
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=93.42 E-value=0.99 Score=48.21 Aligned_cols=127 Identities=13% Similarity=0.151 Sum_probs=80.6
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCC-------ChHHHHHHHHHHHHHHHhh
Q 001584 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE-------SDEVKEKSYYALAAFCEDM 450 (1049)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~-------~~~v~~~a~~~l~~l~~~~ 450 (1049)
..+..+...+.+.+...|..|+..|. .. ..+.+++|.++..+.+. +-.+-...+..+..++.+-
T Consensus 178 ~yf~~It~a~~~~~~~~r~~aL~sL~---tD------~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~ 248 (343)
T cd08050 178 LYFEEITEALVGSNEEKRREALQSLR---TD------PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNP 248 (343)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhc---cC------CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCC
Confidence 33444444444566777777766553 22 23344555555544432 2333344555555565555
Q ss_pred ccccccchHHHHHHHHHhhcC----------CCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhcc
Q 001584 451 GEEILPFLDPLMGKLLAALEN----------SPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLT 513 (1049)
Q Consensus 451 ~~~l~~~~~~ll~~l~~~l~~----------~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 513 (1049)
.-.+.||+..+++.++.++-. .++.+|..+...++.++...+.......++++..+.+.+...
T Consensus 249 ~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~ 321 (343)
T cd08050 249 NLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDP 321 (343)
T ss_pred CCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCC
Confidence 556789999999999888622 346899999999999998887766555667777776666544
No 242
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.29 E-value=21 Score=41.98 Aligned_cols=166 Identities=14% Similarity=0.162 Sum_probs=89.3
Q ss_pred HHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc--h-----hchHHHHHHHH----hhhcCCChhHHhHHHHH
Q 001584 292 PILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA--K-----HVFPPVFEFAS----VSCQNASPKYREAAVTA 360 (1049)
Q Consensus 292 ~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~--~-----~~~~~ll~~l~----~~l~~~~~~~r~~al~~ 360 (1049)
.++..+++++...... ....++..+.-+++.+..... . .+...+++.+. +..+..+...+...+.+
T Consensus 393 ~~l~~l~~l~~~~~~~---~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lka 469 (574)
T smart00638 393 EILKALFELAESPEVQ---KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKA 469 (574)
T ss_pred HHHHHHHHHhcCcccc---ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHh
Confidence 3556666665543221 122456667777777776443 1 11234444444 33444566677888889
Q ss_pred HHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccC--CChHHHHH
Q 001584 361 IGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALED--ESDEVKEK 438 (1049)
Q Consensus 361 l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~--~~~~v~~~ 438 (1049)
||++.... -+..+.+.+. +-.+..+.+|.+|+++|..++...+..+++. ++....+ .+++||.+
T Consensus 470 LGN~g~~~------~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~-------l~~i~~n~~e~~EvRia 535 (574)
T smart00638 470 LGNAGHPS------SIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEV-------LLPIYLNRAEPPEVRMA 535 (574)
T ss_pred hhccCChh------HHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHH-------HHHHHcCCCCChHHHHH
Confidence 98876531 1122223322 2234567899999999998887665543332 3333333 35789988
Q ss_pred HHHHHHHHHHhhccccccchHHHHHHHHHhhc-CCCHhHHHHHHHH
Q 001584 439 SYYALAAFCEDMGEEILPFLDPLMGKLLAALE-NSPRNLQETCMSA 483 (1049)
Q Consensus 439 a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~-~~~~~v~~~~~~~ 483 (1049)
|+..|-.- .|-. ..+..+...+. +++..|+..+.+.
T Consensus 536 A~~~lm~t--------~P~~-~~l~~ia~~l~~E~~~QV~sfv~S~ 572 (574)
T smart00638 536 AVLVLMET--------KPSV-ALLQRIAELLNKEPNLQVASFVYSH 572 (574)
T ss_pred HHHHHHhc--------CCCH-HHHHHHHHHHhhcCcHHHHHHhHHh
Confidence 88776531 1211 23344444433 3456666555543
No 243
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=93.27 E-value=1.9 Score=39.15 Aligned_cols=112 Identities=14% Similarity=0.113 Sum_probs=77.6
Q ss_pred hcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHH
Q 001584 346 CQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPC 423 (1049)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~ 423 (1049)
+..+||..-..-+..+..=.. .-...+..|...+.++++.|...|+..|..+.+.++..+...+ ..++..
T Consensus 13 l~~~dw~~il~icD~I~~~~~--------~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~e 84 (144)
T cd03568 13 LTSENWGLILDVCDKVKSDEN--------GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQE 84 (144)
T ss_pred CCCcCHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHH
Confidence 445677655444444432111 1235677888889999999999999999999999988665433 466777
Q ss_pred HHHhccC-CChHHHHHHHHHHHHHHHhhcccc-ccchHHHHHHH
Q 001584 424 ILNALED-ESDEVKEKSYYALAAFCEDMGEEI-LPFLDPLMGKL 465 (1049)
Q Consensus 424 l~~~l~~-~~~~v~~~a~~~l~~l~~~~~~~l-~~~~~~ll~~l 465 (1049)
+.+.+.+ ..+.|+..++..+......++..- .+++..+...|
T Consensus 85 L~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L 128 (144)
T cd03568 85 LKKLINDRVHPTVKEKLREVVKQWADEFKNDPSLSLMSDLYKKL 128 (144)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 7777776 578999999999999998886421 13444444444
No 244
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.26 E-value=19 Score=42.90 Aligned_cols=108 Identities=22% Similarity=0.243 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcC--CCChh
Q 001584 316 DRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR--DPEQF 393 (1049)
Q Consensus 316 ~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~--d~~~~ 393 (1049)
+..+..+|+.+.. ...++.+.+.+..-. ......|.+|+++|..++..+++...+ .+++.+. ..++.
T Consensus 507 ~~~~LkaLgN~g~---~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~~~~v~~-------~l~~I~~n~~e~~E 575 (618)
T PF01347_consen 507 KIVYLKALGNLGH---PESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHCPEKVRE-------ILLPIFMNTTEDPE 575 (618)
T ss_dssp HHHHHHHHHHHT----GGGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT-HHHHHH-------HHHHHHH-TTS-HH
T ss_pred HHHHHHHhhccCC---chhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcCcHHHHH-------HHHHHhcCCCCChh
Confidence 3444444444431 234444444432211 235678999999999887776654333 3333333 34678
Q ss_pred HHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcc-CCChHHHHHHHHHH
Q 001584 394 VRGAASFALGQFAEYLQPEIVSHYESVLPCILNALE-DESDEVKEKSYYAL 443 (1049)
Q Consensus 394 vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~-~~~~~v~~~a~~~l 443 (1049)
||.+|+..|-.. -++ . .++..+...+. +++..|.....+.|
T Consensus 576 vRiaA~~~lm~~---~P~--~----~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 576 VRIAAYLILMRC---NPS--P----SVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHHHHHHHHT--------H----HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CCC--H----HHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 999998766432 111 1 14444444443 55677766555544
No 245
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.22 E-value=2.2 Score=50.83 Aligned_cols=150 Identities=16% Similarity=0.235 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHc--c-hhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcC-hH-------------HHHHhHHHHHH
Q 001584 319 AAEVIDTMALNL--A-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC-AE-------------WMKEKLESVLH 381 (1049)
Q Consensus 319 a~~~l~~l~~~~--~-~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~-~~-------------~~~~~l~~i~~ 381 (1049)
+...+..+.... | .+++..+.+.+..-....+...+.+|+.+++.+.... .. .....++.+..
T Consensus 414 a~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~ 493 (618)
T PF01347_consen 414 AAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQ 493 (618)
T ss_dssp HHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHH
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHH
Confidence 444555544433 2 4444444444332222245678899999999987642 11 11122334444
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCC---ChHHHHHHHHHHHHHHHhhccccccch
Q 001584 382 IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE---SDEVKEKSYYALAAFCEDMGEEILPFL 458 (1049)
Q Consensus 382 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~---~~~v~~~a~~~l~~l~~~~~~~l~~~~ 458 (1049)
.+-......+...+..++++||++... ..++.+...+.+. ...+|..|+++|..+...+++
T Consensus 494 ~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~------ 557 (618)
T PF01347_consen 494 ELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE------ 557 (618)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH------
T ss_pred HHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH------
Confidence 444455566778888999999988642 3666666666655 578999999999877554443
Q ss_pred HHHHHHHHHhhcC--CCHhHHHHHHHHHH
Q 001584 459 DPLMGKLLAALEN--SPRNLQETCMSAIG 485 (1049)
Q Consensus 459 ~~ll~~l~~~l~~--~~~~v~~~~~~~l~ 485 (1049)
.+.+.+++.+.+ .+.++|..|+..+-
T Consensus 558 -~v~~~l~~I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 558 -KVREILLPIFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp -HHHHHHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCChhHHHHHHHHHH
Confidence 445555555544 35678888876554
No 246
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=92.79 E-value=12 Score=37.68 Aligned_cols=193 Identities=16% Similarity=0.126 Sum_probs=107.6
Q ss_pred CChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHH
Q 001584 261 LEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFE 340 (1049)
Q Consensus 261 ~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~ 340 (1049)
.+++.....++.+..++.+.. .-...+++.+..+...... ..+..+...+..+-..- ...+|.+-+
T Consensus 13 ~~~~~~~~~L~~L~~l~~~~~------~~~~~v~~~L~~L~~~~~~-------~~~~~~~rLl~~lw~~~-~r~f~~L~~ 78 (234)
T PF12530_consen 13 SDPELQLPLLEALPSLACHKN------VCVPPVLQTLVSLVEQGSL-------ELRYVALRLLTLLWKAN-DRHFPFLQP 78 (234)
T ss_pred CChHHHHHHHHHHHHHhccCc------cchhHHHHHHHHHHcCCch-------hHHHHHHHHHHHHHHhC-chHHHHHHH
Confidence 367777778888888875531 1334455665555544332 22333444444443332 223344444
Q ss_pred HHHh-------hh--cCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhc-CCCChhHHHHHHHHHHHhHhhhc
Q 001584 341 FASV-------SC--QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGAL-RDPEQFVRGAASFALGQFAEYLQ 410 (1049)
Q Consensus 341 ~l~~-------~l--~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~ 410 (1049)
.+.. .. .+..|....+...++..++...++ +-.++++.+...+ .+.++.++..++.++..+++.--
T Consensus 79 ~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~v 154 (234)
T PF12530_consen 79 LLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEV 154 (234)
T ss_pred HHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhh
Confidence 4433 11 234577777766677777776665 5557788888888 78888999999999999986543
Q ss_pred HHHHhhhhhHHHHHHHhccCC-ChHHHHHHHHHHHHHHHhh--ccccccchHHHHHHHHHhhcCCCHh
Q 001584 411 PEIVSHYESVLPCILNALEDE-SDEVKEKSYYALAAFCEDM--GEEILPFLDPLMGKLLAALENSPRN 475 (1049)
Q Consensus 411 ~~~~~~~~~ll~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~--~~~l~~~~~~ll~~l~~~l~~~~~~ 475 (1049)
-++...+.-+ .+.+..+ .+.|....+..+.-+-... .+........++..+++.....+.+
T Consensus 155 vd~~s~w~vl----~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 155 VDFYSAWKVL----QKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred ccHHHHHHHH----HHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccc
Confidence 3344443333 3333322 3445444333333221111 1223345667888888887766644
No 247
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=92.67 E-value=26 Score=41.30 Aligned_cols=107 Identities=10% Similarity=0.014 Sum_probs=64.3
Q ss_pred HhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCCh--H--HHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHH
Q 001584 254 EVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLV--I--PILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALN 329 (1049)
Q Consensus 254 ~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~--~--~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~ 329 (1049)
.+..+...+-.+|-.|+-.+...++.....-...... . -|-..++.++.+.+. .....-+.+...++..
T Consensus 43 ~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v~IR~~l~~lii~s~n-------~l~iq~a~avs~IA~~ 115 (947)
T COG5657 43 SINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILPDENVLIRDELFSLIISSSN-------QLQIQNALAVSRIARL 115 (947)
T ss_pred HHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccchHHHHHHHHHHHcccc-------hHHHHHHHHHHHHHhc
Confidence 3444444466778776655555544333211111111 0 244556666665543 3334456677777765
Q ss_pred cchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhc
Q 001584 330 LAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEG 367 (1049)
Q Consensus 330 ~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~ 367 (1049)
--.+-||.++|-+...+++.|...-+..+..+-.+.+.
T Consensus 116 DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~ 153 (947)
T COG5657 116 DFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKR 153 (947)
T ss_pred cCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHH
Confidence 55778999999999999887777777777777666654
No 248
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=92.54 E-value=31 Score=41.84 Aligned_cols=69 Identities=16% Similarity=0.110 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhc----CCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhh
Q 001584 79 VKQSLIESITLE----HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTET 148 (1049)
Q Consensus 79 i~~~ll~~l~~e----~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~ 148 (1049)
+.-.+.++|.+. .++.+|.....++..+...... ..+.+++|-+..++-++++..|.-|...+..+...
T Consensus 78 ~~~aiyE~L~~p~lLr~~~~l~~~F~~~f~~~~~~~~~-~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~ 150 (727)
T PF12726_consen 78 LLLAIYECLCNPALLRDDEELRELFDAIFSSLQSKKPL-KLPKELLPGMTYFLFDGNPERRRWAERWWQRLKRP 150 (727)
T ss_pred HHHHHHHHHhCHHHHcCcHHHHHHHHHHHHHHhccCCc-cccccccchhhhhhhcCCHHHHHHHHHHHHHcCCC
Confidence 334445555431 3556777777777777643322 13377889999988889999999999999887643
No 249
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=91.86 E-value=4.6 Score=36.30 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=75.4
Q ss_pred hcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHH
Q 001584 346 CQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPC 423 (1049)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~ 423 (1049)
+.++||..-..-+..+..=..+ -...+..+...++++++.|...|+..|..+.+.++..+...+ ..++..
T Consensus 14 l~~~dw~~ileicD~In~~~~~--------~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~e 85 (139)
T cd03567 14 NREEDWEAIQAFCEQINKEPEG--------PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNE 85 (139)
T ss_pred CCCCCHHHHHHHHHHHHcCCcc--------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHH
Confidence 4567786655555444321111 124567788889999999999999999999999988775433 356666
Q ss_pred HHHhccC------CChHHHHHHHHHHHHHHHhhccccccchHHHHHHH
Q 001584 424 ILNALED------ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKL 465 (1049)
Q Consensus 424 l~~~l~~------~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l 465 (1049)
+++.+.. ..+.|+..++..+......++. .|.+...+..|
T Consensus 86 l~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~--~p~~~~~Y~~L 131 (139)
T cd03567 86 LIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPH--EPKIKEAYDML 131 (139)
T ss_pred HHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 6666642 4578999999999999888763 24444444443
No 250
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.71 E-value=17 Score=37.21 Aligned_cols=301 Identities=16% Similarity=0.139 Sum_probs=165.9
Q ss_pred hcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCC--CChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHH
Q 001584 346 CQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD--PEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLP 422 (1049)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~ 422 (1049)
-.+++...-.-++.++..+..+.++.+... -+..++..|.+ .+..+-...+.++..-+......-+..+ -.+++
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qpdl~da~---g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQPDLFDAE---AMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCcchhccc---cHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 455666666677777777777766654433 23334444432 3445656666666555443321112222 24566
Q ss_pred HHHHhccCCC-hHHHHHHHHHHHHHHHhhccccc-------cchH-----HHHHHHHHhhcCC-CHhHHHHHHHHHHHHH
Q 001584 423 CILNALEDES-DEVKEKSYYALAAFCEDMGEEIL-------PFLD-----PLMGKLLAALENS-PRNLQETCMSAIGSVA 488 (1049)
Q Consensus 423 ~l~~~l~~~~-~~v~~~a~~~l~~l~~~~~~~l~-------~~~~-----~ll~~l~~~l~~~-~~~v~~~~~~~l~~l~ 488 (1049)
.+...+.... .++-...++++..+.-. +++. .|.. .++..|...++-. ++.+-..+..+++.++
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~d--DDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA 270 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTD--DDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALA 270 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCC--CceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHH
Confidence 6665555442 34556677887766522 2211 1222 2344455554432 3666667777777765
Q ss_pred HHhhhhccccHHH--HHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhcccc------chHHHHHHHHhccCCCCc
Q 001584 489 AAAEQAFIPYAER--VLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEP------ILPPFVEAAISGFGLEFS 560 (1049)
Q Consensus 489 ~~~~~~~~~~~~~--~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~------~~~~i~~~l~~~l~~~~~ 560 (1049)
-.- .|-.-... =+..+..++...++. ..|..+-.|++.+....|.+.... -++.|+..+... ++++
T Consensus 271 Vr~--E~C~~I~e~GGl~tl~~~i~d~n~~--~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h--~~~p 344 (461)
T KOG4199|consen 271 VRD--EICKSIAESGGLDTLLRCIDDSNEQ--GNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRH--SDDP 344 (461)
T ss_pred HHH--HHHHHHHHccCHHHHHHHHhhhchh--hHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHc--CCCh
Confidence 432 22111111 133455555443333 334444556666655556544332 345566665554 4567
Q ss_pred hhhHHHHHHHHHHHHHcccCccCchhhh-hHHHHhhccCCCCCccCCCCCchhhhccCCCCCCCcchhhcccccceeeec
Q 001584 561 ELREYTHGFFSNIAGVLEDGFAQYLPLV-VPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRT 639 (1049)
Q Consensus 561 ~~r~~~~~~l~~l~~~~~~~~~~~l~~i-~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 639 (1049)
.+.+.++.+++-++-..++.-..+++.= -...++.++..| .
T Consensus 345 ~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP------------------------------------~-- 386 (461)
T KOG4199|consen 345 LVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHP------------------------------------V-- 386 (461)
T ss_pred HHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCc------------------------------------H--
Confidence 8888888888888876665443333211 111122221111 0
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001584 640 GVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNI 696 (1049)
Q Consensus 640 ~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l 696 (1049)
.-.+...||+++..++......-.+++..-++.++......+++++..+-.+|..+
T Consensus 387 -~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 387 -AAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred -HHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 11256789999999988877777788888888888877788889998888888766
No 251
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=91.68 E-value=38 Score=41.06 Aligned_cols=150 Identities=13% Similarity=0.134 Sum_probs=76.8
Q ss_pred cHHHHHHHHhcC----CChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc-
Q 001584 36 VVPALVQHLRTA----KTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYA- 110 (1049)
Q Consensus 36 ~~~~l~~il~~~----~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~- 110 (1049)
....+.+++.+. .++.+|..=-..++....+.-..+. ..+...++..+.. .++..|+-+...+..+.+..
T Consensus 78 ~~~aiyE~L~~p~lLr~~~~l~~~F~~~f~~~~~~~~~~~~----~~~lPG~~~~Lf~-~~~~~r~WA~~~~~~l~~~~~ 152 (727)
T PF12726_consen 78 LLLAIYECLCNPALLRDDEELRELFDAIFSSLQSKKPLKLP----KELLPGMTYFLFD-GNPERRRWAERWWQRLKRPPY 152 (727)
T ss_pred HHHHHHHHHhCHHHHcCcHHHHHHHHHHHHHHhccCCcccc----ccccchhhhhhhc-CCHHHHHHHHHHHHHcCCCcc
Confidence 556777777652 3455665544444444322211111 4444566677774 78999999999999987642
Q ss_pred -CCCCCCc-chHH----HHHHhccCC--CHHHHHHHHHHHHHhhhhhhh-cccccHHH-----HHHHHHHhhCCCCChHH
Q 001584 111 -VPAGEWP-DLLP----FLFQFSQSE--QEEHREVALILFSSLTETIGQ-TFRPHFAD-----MQALLLKCLQDETSNRV 176 (1049)
Q Consensus 111 -~~~~~w~-~ll~----~l~~~l~~~--~~~~~~~al~~l~~l~~~~~~-~~~~~~~~-----l~~~l~~~l~~~~~~~v 176 (1049)
+....|. .+.+ .+... +.. ++.....-=..+..++..++. .+..++.. +..++.+.|.+ .....
T Consensus 153 ~~t~~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~i~~L~~~hL~~-~~~~~ 230 (727)
T PF12726_consen 153 SITDEEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRLLDKEQITHSLRALELDPIYRLLLNHLSS-NLSPP 230 (727)
T ss_pred CCchhhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHHccHHHHHHHHhccccchHHHHHHHHhhc-ccchh
Confidence 2323453 2232 33232 221 222111111223333333331 12222222 67778888877 42444
Q ss_pred HHHHHHHHHHhhcccC
Q 001584 177 RIAALKAIGSFLEFTN 192 (1049)
Q Consensus 177 r~~a~~~l~~~~~~~~ 192 (1049)
-...++++..+++..+
T Consensus 231 l~~lL~~l~~lL~k~~ 246 (727)
T PF12726_consen 231 LPILLRCLSILLEKLG 246 (727)
T ss_pred HHHHHHHHHHHHHhCH
Confidence 4566778877776654
No 252
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=91.64 E-value=1.4 Score=47.19 Aligned_cols=125 Identities=14% Similarity=0.158 Sum_probs=85.9
Q ss_pred HHHHHHHHcc-hhchHHHHHHHHhhhcC--C-ChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhc----------
Q 001584 322 VIDTMALNLA-KHVFPPVFEFASVSCQN--A-SPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGAL---------- 387 (1049)
Q Consensus 322 ~l~~l~~~~~-~~~~~~ll~~l~~~l~~--~-~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l---------- 387 (1049)
+|..+...-| ..++|-++.++.+.... . ++..-...+..+..+..+..-.+.+++-+++|.++.++
T Consensus 198 aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~ 277 (343)
T cd08050 198 ALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPP 277 (343)
T ss_pred HHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCC
Confidence 5555666555 66677777777655432 2 56555666677777777766677888889999999887
Q ss_pred CCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHH--HHHHHHHHHHH
Q 001584 388 RDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEV--KEKSYYALAAF 446 (1049)
Q Consensus 388 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v--~~~a~~~l~~l 446 (1049)
.+.|+.+|.-|...++.++..++.......+.++..+.+.+.|+.... ...|+..|..+
T Consensus 278 ~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 278 DDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred CchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 246789999999999999998875444444567777788887775322 34455555443
No 253
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=91.61 E-value=6.2 Score=43.33 Aligned_cols=153 Identities=14% Similarity=0.147 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHcc-hhchHHHHHHHHhhhcC----CChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhc--
Q 001584 315 PDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQN----ASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGAL-- 387 (1049)
Q Consensus 315 ~~~~a~~~l~~l~~~~~-~~~~~~ll~~l~~~l~~----~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l-- 387 (1049)
.|..|. ..+...-| ..++|.+..+|.+...- .|-..-...+..+..+..+..=.+.+++.+++|.++.|+
T Consensus 223 ~r~eAL---~sL~TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVs 299 (576)
T KOG2549|consen 223 LRQEAL---QSLETDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVS 299 (576)
T ss_pred HHHHHH---HhhccCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhh
Confidence 455444 44444444 44556666655544322 223333344444555555555567788889999988875
Q ss_pred --------CCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCC--hHHHHHHHHHHHHHHHhh-cccccc
Q 001584 388 --------RDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES--DEVKEKSYYALAAFCEDM-GEEILP 456 (1049)
Q Consensus 388 --------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~--~~v~~~a~~~l~~l~~~~-~~~l~~ 456 (1049)
.|.|+.+|.-|...+..++..++......-..++..+.+.+.|+. ......++..|..|-... ..-+.|
T Consensus 300 k~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp 379 (576)
T KOG2549|consen 300 KNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEVIRTVILP 379 (576)
T ss_pred hhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhhhheecc
Confidence 367889999999999999999876555555678888888888874 334455666666665433 223456
Q ss_pred chHHHHHHHHHhhc
Q 001584 457 FLDPLMGKLLAALE 470 (1049)
Q Consensus 457 ~~~~ll~~l~~~l~ 470 (1049)
.+......+.+.+.
T Consensus 380 ~L~~~~~~l~~~l~ 393 (576)
T KOG2549|consen 380 NLKEYNERLQSVLD 393 (576)
T ss_pred chHHHHHHhhhhcc
Confidence 66666555555443
No 254
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=91.48 E-value=27 Score=38.95 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHHHHHHcchhchHHHHH-HHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHh-HHHHHHHHHhhcCCC
Q 001584 314 APDRAAAEVIDTMALNLAKHVFPPVFE-FASVSCQNASPKYREAAVTAIGIISEGCAEWMKEK-LESVLHIVLGALRDP 390 (1049)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~~~~~~~ll~-~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~-l~~i~~~l~~~l~d~ 390 (1049)
..|-.|+.+|+.+...++......++. .+..+++++....|..|...+...+......-... .+.+.+.+...|.++
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence 346778999999999988666666665 57888999988899999988888877654221111 234555666666643
No 255
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=91.31 E-value=22 Score=37.69 Aligned_cols=189 Identities=10% Similarity=0.100 Sum_probs=110.5
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhccCCC----------CCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhh--
Q 001584 82 SLIESITLEHSAPVRRASANVVSIIAKYAVPA----------GEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETI-- 149 (1049)
Q Consensus 82 ~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~----------~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~-- 149 (1049)
.|+..|.. -+-..|+.++.+.+.+.++.... ..||+++..+.....+++...-.+ .++..++.+-
T Consensus 80 ~Li~~L~~-L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g--~mlRec~k~e~l 156 (335)
T PF08569_consen 80 LLIRNLPK-LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCG--DMLRECIKHESL 156 (335)
T ss_dssp HHHHTGGG-S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHH--HHHHHHTTSHHH
T ss_pred HHHHHhhh-CCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHH--HHHHHHHhhHHH
Confidence 34444443 56667777777777776643221 357888888888887766433322 2344333221
Q ss_pred hhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001584 150 GQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEI 229 (1049)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ 229 (1049)
...+-. ...+..+.+..+. ++-+|-.-|..++..+...... -...-+......++.....++.+++--.+..+++.
T Consensus 157 ~~~iL~--~~~f~~ff~~~~~-~~Fdiasdaf~t~~~llt~hk~-~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 157 AKIILY--SECFWKFFKYVQL-PNFDIASDAFSTFKELLTRHKK-LVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp HHHHHT--SGGGGGHHHHTTS-SSHHHHHHHHHHHHHHHHSSHH-HHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred HHHHhC--cHHHHHHHHHhcC-CccHhHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 110000 1122224466676 8899999999888887665321 11122344456666677778888888889999999
Q ss_pred HHHHhccCC--cchhhhH--HHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhh
Q 001584 230 FDELIESPA--PLLGDSV--KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKY 279 (1049)
Q Consensus 230 l~~l~~~~~--~~~~~~~--~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~ 279 (1049)
|.+++.... ..+..++ ++-+..++.++.++ +..+|..|+.++.-++.+
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~--sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK--SKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc--chhhhHHHHHHHHHHHhC
Confidence 999986543 2333333 24455666677665 778999999888877643
No 256
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.27 E-value=0.92 Score=42.52 Aligned_cols=88 Identities=11% Similarity=0.107 Sum_probs=71.4
Q ss_pred HHHHHHHhhccCCCcccchhhhHhHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhc---Ccch
Q 001584 825 LFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNG---GESA 901 (1049)
Q Consensus 825 l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~---~~~~ 901 (1049)
++|.+...+.+-+.+ .|-.|-..+.|++.+.|+.+.|.+++++..+-.++...|.++...++..|-.+.... |...
T Consensus 115 yLp~F~dGL~e~~hp-yrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aL 193 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHP-YRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAAL 193 (262)
T ss_pred HHHHHhhhhhhcCCC-cchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhh
Confidence 444455555444433 588999999999999999999999999999999999999999999888888887655 4678
Q ss_pred hhHHHHHHHhhh
Q 001584 902 LKYYGDILRGLY 913 (1049)
Q Consensus 902 ~~~~~~~l~~L~ 913 (1049)
.|||-++++.+.
T Consensus 194 VPfYRQlLp~~n 205 (262)
T KOG3961|consen 194 VPFYRQLLPVLN 205 (262)
T ss_pred hhHHHHhhhhhh
Confidence 899999987764
No 257
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=91.08 E-value=0.22 Score=40.39 Aligned_cols=81 Identities=14% Similarity=0.150 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHhhCChhhcchhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhhHHHHHhcCCHHHHHHHHh
Q 001584 965 ESMAVYNCISTLVLSSNPQILSLVPELVNLFAEVVVSPEESSEVKSQVGMAFSHLISLYGQQMQPLLSNLSPAHATALAA 1044 (1049)
Q Consensus 965 e~~~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~ 1044 (1049)
+...+..+|+.++...+=.+-+++|.++..++....+ ...++..+...+.++++++.+.|..--..+++++.+.|+.
T Consensus 5 ~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~---~~~I~~tvk~tl~eFkrtH~D~W~~~~~~Ft~~ql~~l~~ 81 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND---PQPIRTTVKKTLSEFKRTHQDTWHEHKKKFTEDQLEDLED 81 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS----SSHHHHTHHHHHHHHHHTSTTHHHHGGG--SSTTGGGSS
T ss_pred HHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC---CchHHHHHHHHHHHHHHhCcccHHHHHHhCCHHHHHHHHc
Confidence 4556778899999877766778999999988777552 5678899999999999999999977778889998888877
Q ss_pred h-cCC
Q 001584 1045 F-APK 1048 (1049)
Q Consensus 1045 ~-~~~ 1048 (1049)
+ .+|
T Consensus 82 ~~~~p 86 (90)
T PF11919_consen 82 VLVSP 86 (90)
T ss_dssp -----
T ss_pred CCCCC
Confidence 6 443
No 258
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.54 E-value=4.8 Score=42.75 Aligned_cols=130 Identities=16% Similarity=0.152 Sum_probs=68.9
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccC----CChHHHHHHHHHHHHHHHhhc--c
Q 001584 379 VLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALED----ESDEVKEKSYYALAAFCEDMG--E 452 (1049)
Q Consensus 379 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~----~~~~v~~~a~~~l~~l~~~~~--~ 452 (1049)
.+..+++.+..++..++..|+..++.+....+.........+++.++..+.+ ++..++..++.+|..+++.-. .
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 5666777888889999999999999998887553333223455555555443 445677888999999885432 2
Q ss_pred ccccchHHHHHHHHHhh-----cCC--CHhHHHHHHHHHHHHH---HHhhhhccccHHHHHHHHHHHHhcc
Q 001584 453 EILPFLDPLMGKLLAAL-----ENS--PRNLQETCMSAIGSVA---AAAEQAFIPYAERVLELLKIFMVLT 513 (1049)
Q Consensus 453 ~l~~~~~~ll~~l~~~l-----~~~--~~~v~~~~~~~l~~l~---~~~~~~~~~~~~~~~~~l~~~l~~~ 513 (1049)
.+.. ...++.+.+.+ .++ ...++-+++-|+=.+. ...+.....+ ++|.+.+++...
T Consensus 186 ~f~~--~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~---~i~~L~~i~~~~ 251 (312)
T PF03224_consen 186 VFWK--SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY---LIPLLADILKDS 251 (312)
T ss_dssp HHHT--HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS---HHHHHHHHHHH-
T ss_pred HHHh--cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc---hHHHHHHHHHhc
Confidence 1211 45555555555 222 2334444444333222 1222222223 777777777644
No 259
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=90.52 E-value=7.1 Score=35.43 Aligned_cols=76 Identities=11% Similarity=0.111 Sum_probs=59.9
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhcc-CCChHHHHHHHHHHHHHHHhhccc
Q 001584 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALE-DESDEVKEKSYYALAAFCEDMGEE 453 (1049)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~-~~~~~v~~~a~~~l~~l~~~~~~~ 453 (1049)
..+..+...+.++++.++..|+..|..+...++..+...+ ..++..+.+.+. ...+.|+..++..+......++..
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 5677888889999999999999999999999887664332 355566665554 456889999999999999888643
No 260
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.43 E-value=23 Score=36.36 Aligned_cols=311 Identities=14% Similarity=0.146 Sum_probs=168.2
Q ss_pred CCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCC-CChHHHHHHHHHHHHhhcccCC
Q 001584 115 EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDE-TSNRVRIAALKAIGSFLEFTND 193 (1049)
Q Consensus 115 ~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~~~~~~~~ 193 (1049)
.++-++-... +..+++..+..-++.++..+...-|+.+...- +.++...|.+. ++.++-...++++..-+-..+-
T Consensus 105 a~~~~it~~~-la~~~~~~~l~ksL~al~~lt~~qpdl~da~g---~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~ 180 (461)
T KOG4199|consen 105 AHDALITLLE-LAESPNESVLKKSLEAINSLTHKQPDLFDAEA---MAVVLKLLALKVESEEVTLLTLQWLQKACIMHEV 180 (461)
T ss_pred CcchhhhHHH-HhhCCchhHHHHHHHHHHHhhcCCcchhcccc---HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHH
Confidence 4444444443 46667767777788888887766665544322 34444555432 4566777777777665443321
Q ss_pred hhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccC-Cc--------chhhhHHH-HHHHHHHhhhCCCCCh
Q 001584 194 GAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP-AP--------LLGDSVKS-IVHFSLEVSSSHNLEP 263 (1049)
Q Consensus 194 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~-~~--------~~~~~~~~-l~~~l~~~~~~~~~~~ 263 (1049)
+...-.--..+|.+.+.+. ..+..+...+.++.+..+.-.. .. +-..+... ++..+.+...-. .++
T Consensus 181 nrQ~~m~~~il~Li~~~l~---~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~-~dp 256 (461)
T KOG4199|consen 181 NRQLFMELKILELILQVLN---REGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAG-IDP 256 (461)
T ss_pred HHHHHHHhhHHHHHHHHHc---ccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHcc-CCc
Confidence 1111111223344444321 2233357777778777765432 10 11111111 122233333222 345
Q ss_pred HHHHHHHHHHHHHHhhhHhhhh---hcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchh-------
Q 001584 264 NTRHQAIQIISWLAKYKYNSLK---KHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH------- 333 (1049)
Q Consensus 264 ~~r~~a~~~l~~l~~~~~~~~~---~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~------- 333 (1049)
++-..+...+..++-. ...++ ..+ =+..++..+.+..+ ...|..+..+++.+...-|.+
T Consensus 257 ~~L~~l~~tl~~lAVr-~E~C~~I~e~G----Gl~tl~~~i~d~n~------~~~r~l~k~~lslLralAG~DsvKs~IV 325 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAVR-DEICKSIAESG----GLDTLLRCIDDSNE------QGNRTLAKTCLSLLRALAGSDSVKSTIV 325 (461)
T ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHHcc----CHHHHHHHHhhhch------hhHHHHHHHHHHHHHHHhCCCchHHHHH
Confidence 5555555555555422 11111 111 14455666655433 145666667776666555521
Q ss_pred ---chHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHH-HHHHHHhhcC-CC-ChhHHHHHHHHHHHhHh
Q 001584 334 ---VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLES-VLHIVLGALR-DP-EQFVRGAASFALGQFAE 407 (1049)
Q Consensus 334 ---~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~-i~~~l~~~l~-d~-~~~vr~~a~~~l~~l~~ 407 (1049)
..+.++..+.+ .+.++.+-+.++.++..++-..++.-...++. .-...++.++ +| +..|+..||+.+.++..
T Consensus 326 ~~gg~~~ii~l~~~--h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~ 403 (461)
T KOG4199|consen 326 EKGGLDKIITLALR--HSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVV 403 (461)
T ss_pred HhcChHHHHHHHHH--cCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 12334444333 34677888889999999887777655444432 3445666665 44 56799999999999988
Q ss_pred hhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHH
Q 001584 408 YLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAF 446 (1049)
Q Consensus 408 ~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l 446 (1049)
.-...-...+..-+..|+..-...++.++..+-.+|..+
T Consensus 404 rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 404 RSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred hhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 765544455666677777766666677777666666544
No 261
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=90.37 E-value=0.54 Score=31.75 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=26.8
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhH
Q 001584 378 SVLHIVLGALRDPEQFVRGAASFALGQFA 406 (1049)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 406 (1049)
..+|.++..+.++++.||..|+|+|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999886
No 262
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=90.34 E-value=5.6 Score=35.73 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=64.8
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhccC---CChHHHHHHHHHHHHHHHhhc
Q 001584 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALED---ESDEVKEKSYYALAAFCEDMG 451 (1049)
Q Consensus 377 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~---~~~~v~~~a~~~l~~l~~~~~ 451 (1049)
...+..|...+.+++|.++..|+..|..+...+++.+...+ ...+..+.+.+.. .++.|+..+...+......++
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 35677888889999999999999999999999987664432 2455556666654 467899999999999998886
Q ss_pred cc--cccchHHHHHH
Q 001584 452 EE--ILPFLDPLMGK 464 (1049)
Q Consensus 452 ~~--l~~~~~~ll~~ 464 (1049)
.. -.+++..+...
T Consensus 116 ~~~~~~~~~~~~y~~ 130 (133)
T cd03561 116 GHSEDLPGIEDAYKL 130 (133)
T ss_pred CCCccchHHHHHHHH
Confidence 42 23444444443
No 263
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=90.29 E-value=3.5 Score=37.40 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=60.1
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccc--hHHHHHHHHHhhcC-CCHhHHHHHHHHHHHHHHHhh
Q 001584 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPF--LDPLMGKLLAALEN-SPRNLQETCMSAIGSVAAAAE 492 (1049)
Q Consensus 418 ~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~--~~~ll~~l~~~l~~-~~~~v~~~~~~~l~~l~~~~~ 492 (1049)
...+..+.+.+++.++.|+..|+..|..++++++..+... -..+++.|..++.. .+..|+..++..+...+...+
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 3577888889999999999999999999999998754321 23667777777776 688899999999888777665
No 264
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=90.01 E-value=24 Score=35.92 Aligned_cols=70 Identities=17% Similarity=0.140 Sum_probs=46.9
Q ss_pred HHHHHHHhhcCCCChh-HHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 001584 378 SVLHIVLGALRDPEQF-VRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDESDEVKEKSYYALAAFCE 448 (1049)
Q Consensus 378 ~i~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~ 448 (1049)
.++..+...++..++. .-..||.-++++.+..++ ....+ -..-..++..++.++++|+-.|++++..++.
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE-~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE-INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch-HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 5666677777644433 334567778888877754 32222 1344556788899999999999999987764
No 265
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=89.72 E-value=42 Score=38.22 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcCh------HHHHHhHHHHHHHHHhhcCCC
Q 001584 317 RAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA------EWMKEKLESVLHIVLGALRDP 390 (1049)
Q Consensus 317 ~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~------~~~~~~l~~i~~~l~~~l~d~ 390 (1049)
+.....+..++.-.|.-.+.. +..+.+++.+.....|.+-+.+++.+++... ++.+..+..++..+...+.|.
T Consensus 280 k~islFl~kls~l~p~i~lrq-~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~ 358 (1128)
T COG5098 280 KDISLFLNKLSELSPGIMLRQ-YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDT 358 (1128)
T ss_pred HHHHHHHHHHhhcCchHHHHH-HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhcc
Confidence 344456666666555433322 2334456788889999999999999987532 334456888999999999999
Q ss_pred ChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh
Q 001584 391 EQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (1049)
Q Consensus 391 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~ 450 (1049)
+|.+|..|+..+..++..-.. ....-..+...+.+.++|.+..||..|.+.++.++-..
T Consensus 359 ~py~RtKalqv~~kifdl~sk-~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 359 YPYTRTKALQVLEKIFDLNSK-TVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred chHHHHHHHHHHHHHHhCccc-ccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 999999999999888765321 12223467888899999999999999999998887543
No 266
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=89.64 E-value=33 Score=36.99 Aligned_cols=210 Identities=16% Similarity=0.144 Sum_probs=109.1
Q ss_pred HHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhh----
Q 001584 291 IPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISE---- 366 (1049)
Q Consensus 291 ~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~---- 366 (1049)
..+++.+.+.+.+...+ .....+..++..-...++..+-+.++..+...+++.....|.+-+.+++.+..
T Consensus 21 ~~i~~~l~~~~~KE~nE------~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNE------AALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN 94 (339)
T ss_pred HHHHHHHHHHHHhhcCH------HHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence 44666677766553220 22333334443333333455667888888899999888899999999998875
Q ss_pred c-ChHHHHHhHHHHHHHHHhhcCCCChhHHH---HHHHHHHHhHhhhcHHHHh--hh---------h--hHHHHHHHhcc
Q 001584 367 G-CAEWMKEKLESVLHIVLGALRDPEQFVRG---AASFALGQFAEYLQPEIVS--HY---------E--SVLPCILNALE 429 (1049)
Q Consensus 367 ~-~~~~~~~~l~~i~~~l~~~l~d~~~~vr~---~a~~~l~~l~~~~~~~~~~--~~---------~--~ll~~l~~~l~ 429 (1049)
+ ......+.++.++..+-+....|.+.... .+..++-.......+.+.. .. + -+-+.+...+.
T Consensus 95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~ 174 (339)
T PF12074_consen 95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA 174 (339)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC
Confidence 2 22333444555555555555666554331 1111111111100011100 00 0 00111122211
Q ss_pred CCChHHHHHHHHHHHHHHHhhccccccc-hHHHHHHHHHhhcCC--CHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Q 001584 430 DESDEVKEKSYYALAAFCEDMGEEILPF-LDPLMGKLLAALENS--PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELL 506 (1049)
Q Consensus 430 ~~~~~v~~~a~~~l~~l~~~~~~~l~~~-~~~ll~~l~~~l~~~--~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l 506 (1049)
+ +.-..-.+.++..+.........+. .......++.++.+. .+.+|..+...+..+....+.. .-..++.-+
T Consensus 175 ~--~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~---l~~~li~~l 249 (339)
T PF12074_consen 175 S--EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL---LSKSLISGL 249 (339)
T ss_pred C--HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH---HHHHHHHHH
Confidence 1 1222335555555555554433322 355666667777676 7999999999999888776654 223344444
Q ss_pred HHHHh
Q 001584 507 KIFMV 511 (1049)
Q Consensus 507 ~~~l~ 511 (1049)
.+.+.
T Consensus 250 ~~~l~ 254 (339)
T PF12074_consen 250 WKWLS 254 (339)
T ss_pred HHHHH
Confidence 44443
No 267
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=89.60 E-value=6 Score=36.43 Aligned_cols=131 Identities=15% Similarity=0.096 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhHHHHHHHHhHHHHHHHHhCC-ChHHHHHHHHHHHHHhhccCC
Q 001584 759 PYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGP-HFAPIFAKLFDPLMKFAKSSR 837 (1049)
Q Consensus 759 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~ 837 (1049)
.+.+.+.+.++..|.-+....... +.++-++-|. .+.+++-.++-.+.+ .|.|.|.+++.+-...+.+.+
T Consensus 6 ~~~~~l~~~~l~ald~R~~~~~~~-----~~~~v~~vE~----~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~ 76 (153)
T PF08146_consen 6 KNSPQLFDFFLQALDFRRQQRSKF-----DLEDVDEVES----SVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSD 76 (153)
T ss_pred HhHHHHHHHHHHHHHHHHHhcccc-----CHHHHHHHHH----HHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCccc
Confidence 345556666666665544321110 0111122333 334444555555555 899999999888776554432
Q ss_pred C--cccch-hhhHhHHHHHhhcCCchhhcHhhhHHHHHHhcCCCC----------hHhHHHHHHHHHHHHhhcC
Q 001584 838 P--LQDRT-MVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPD----------AMNRRNAAFCVGELCKNGG 898 (1049)
Q Consensus 838 ~--~~~r~-~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~----------~~vr~~a~~~lg~l~~~~~ 898 (1049)
. ...|. .-...+..+.+.+..-+.||...++....+.|...+ ..++...+.+|.....+..
T Consensus 77 ~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~~~~~~~~~~~~~~~~L~~~vL~~L~~~F~~D~ 150 (153)
T PF08146_consen 77 SSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLKQFNSSKTESKSKSWELWRLVLSTLQKCFLHDQ 150 (153)
T ss_pred CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcc
Confidence 2 22344 335566667777777788999999988877775332 2444455555555544443
No 268
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=89.32 E-value=0.7 Score=31.17 Aligned_cols=29 Identities=31% Similarity=0.524 Sum_probs=26.6
Q ss_pred hhHHHHHHhcCCCChHhHHHHHHHHHHHH
Q 001584 866 RVMPLVLKELASPDAMNRRNAAFCVGELC 894 (1049)
Q Consensus 866 ~i~~~l~~~l~~~~~~vr~~a~~~lg~l~ 894 (1049)
..+|.+++.+.+.+.+++.+|+++|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999886
No 269
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=89.28 E-value=49 Score=38.47 Aligned_cols=401 Identities=12% Similarity=0.089 Sum_probs=187.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-C---------CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhccCC
Q 001584 2 AQSLELLLIQFLMPDNDARRQAEDQIKRLAK-D---------PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKL 71 (1049)
Q Consensus 2 ~~~l~~ll~~~~s~d~~~r~~a~~~L~~~~~-~---------p~~~~~l~~il~~~~~~~~R~~a~~~l~~~i~~~w~~~ 71 (1049)
..++...++.+.++++.++..|...+..+.. + -+-++.|+.++. +...+++..|+-.|||++...-.
T Consensus 232 d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~-~~~~evq~~acgaLRNLvf~~~~-- 308 (717)
T KOG1048|consen 232 DPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLD-HRNDEVQRQACGALRNLVFGKST-- 308 (717)
T ss_pred ccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhc-CCcHHHHHHHHHHHHhhhcccCC--
Confidence 3467788888999999988888888876542 2 134666777664 67888999999999999865432
Q ss_pred CHHHHHHHH-----HHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHh-
Q 001584 72 SPQLKQLVK-----QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSL- 145 (1049)
Q Consensus 72 ~~~~~~~i~-----~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l- 145 (1049)
.+.+-.|+ ..+++.|....|..||+.++.++-.+.+.+. + .......++.+|..-
T Consensus 309 -~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~-------l-----------K~~ii~~al~tLt~~v 369 (717)
T KOG1048|consen 309 -DSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA-------L-----------KMLIITSALSTLTDNV 369 (717)
T ss_pred -cccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH-------H-----------HHHHHHHHHHHHHHhh
Confidence 11222222 2455666655788888887633332222210 0 001112222222221
Q ss_pred -hhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCC-hhhHHHHHhhhHHHHHHHHHHhhcC--CHH
Q 001584 146 -TETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTND-GAEVVKFREFIPSILNVSRQCLASG--EED 221 (1049)
Q Consensus 146 -~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~ll~~l~~~l~~~--~~~ 221 (1049)
+...+=. .+..+ .-+ .+..|-..+..||.++.....+ .........++..++..+..+++.. +..
T Consensus 370 I~P~Sgw~-~~~~~-------~~~---~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K 438 (717)
T KOG1048|consen 370 IIPHSGWE-EEPAP-------RKA---EDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSK 438 (717)
T ss_pred cccccccC-CCCcc-------ccc---ccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccch
Confidence 1111000 00000 000 0111222233333332221100 0011122455566666666665543 223
Q ss_pred HHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhh---------Hhhhhhc-----
Q 001584 222 VAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYK---------YNSLKKH----- 287 (1049)
Q Consensus 222 ~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~---------~~~~~~~----- 287 (1049)
....+..++-++.-....-+.+. ..+.+-.......... -. ....++..-.+.. |..-...
T Consensus 439 ~VENcvCilRNLSYrl~~Evp~~---~~~~~~~~~~~~~~~~-~~-~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~ 513 (717)
T KOG1048|consen 439 SVENCVCILRNLSYRLEAEVPPK---YRQVLANIARLPGVGP-PA-ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEW 513 (717)
T ss_pred hHHHHHHHHhhcCchhhhhcCHh---hhhHhhcccccccCCC-cc-cccccccchhhhchhcccccCCcccccCCCCcee
Confidence 34455555554422111101111 1111100100000000 00 1111111111110 0000000
Q ss_pred CChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc---h----hch--HHHHHHHHhhhcCCChhHHhHHH
Q 001584 288 KLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA---K----HVF--PPVFEFASVSCQNASPKYREAAV 358 (1049)
Q Consensus 288 ~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~---~----~~~--~~ll~~l~~~l~~~~~~~r~~al 358 (1049)
-+-+.++..-+.+|.+...+ ...++++.+|..++...+ . .++ ...++.+.+++..++..+..++.
T Consensus 514 Lw~p~vVr~Yl~Ll~~s~n~------~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a 587 (717)
T KOG1048|consen 514 LWHPSVVRPYLLLLALSKND------NTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAA 587 (717)
T ss_pred eecHHHHHHHHHHHHHhcch------HHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHH
Confidence 02234444444445433221 344556666666664433 1 111 23456777778889999999999
Q ss_pred HHHHHHhhcCh--HHHHHhHHHHHHHHHhhcCCCC------hhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHHHHhcc
Q 001584 359 TAIGIISEGCA--EWMKEKLESVLHIVLGALRDPE------QFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALE 429 (1049)
Q Consensus 359 ~~l~~i~~~~~--~~~~~~l~~i~~~l~~~l~d~~------~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l~ 429 (1049)
.+|..++-+.. +.+. ...++-++.+|.+.. ..+-.+++.+|..+...-.....+.+ ..-++.++....
T Consensus 588 ~~LrNls~d~rnk~lig---k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~ 664 (717)
T KOG1048|consen 588 GALRNLSRDIRNKELIG---KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISK 664 (717)
T ss_pred HHHhhhccCchhhhhhh---cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhc
Confidence 99999988753 3333 245777777776543 45566777777777643222223322 233444443333
Q ss_pred C-CChHHHHHHHHHHHHHHHh
Q 001584 430 D-ESDEVKEKSYYALAAFCED 449 (1049)
Q Consensus 430 ~-~~~~v~~~a~~~l~~l~~~ 449 (1049)
. .++++-.+|+..|..+...
T Consensus 665 s~~S~k~~kaAs~vL~~lW~y 685 (717)
T KOG1048|consen 665 SQHSPKEFKAASSVLDVLWQY 685 (717)
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 3 3467777777777776543
No 270
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.15 E-value=27 Score=44.17 Aligned_cols=232 Identities=11% Similarity=0.161 Sum_probs=121.2
Q ss_pred HhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhh-hhccc---ccHHHHHH
Q 001584 87 ITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETI-GQTFR---PHFADMQA 162 (1049)
Q Consensus 87 l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~-~~~~~---~~~~~l~~ 162 (1049)
.....+..||..+..+++.-+ +..|..++..+-......+....+.++..+..+.... ...+. ..+.+.++
T Consensus 1045 m~~s~s~~Irelv~rC~~~ni-----kSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~ 1119 (1514)
T KOG0929|consen 1045 MKRSSSAEIRELVVRCISSNI-----KSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVK 1119 (1514)
T ss_pred hhccCcchhHHHHHhhhhhhh-----hhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHH
Confidence 334467889999988888322 2489999998888887777777788888777555433 22222 22334445
Q ss_pred HHHHhhCCCCChHHHHHHHHHHHHhhcccCCh---hh--------HHHH-HhhhHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 001584 163 LLLKCLQDETSNRVRIAALKAIGSFLEFTNDG---AE--------VVKF-REFIPSILNVSRQCLASGEEDVAVIAFEIF 230 (1049)
Q Consensus 163 ~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~---~~--------~~~~-~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l 230 (1049)
.+.+...+...+..-..+++.+..++....+. .. ...+ ..++|.+... ...+.....+++..+++.+
T Consensus 1120 cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~l-s~i~~~~~~~vr~~al~vl 1198 (1514)
T KOG0929|consen 1120 CLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQL-SKIINDYRLEVRKRALEVL 1198 (1514)
T ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhh-hHHhhccHHHHHHHHHHHH
Confidence 55544432122222223332222222221111 00 0112 3345555443 3333345678899999999
Q ss_pred HHHhccCCcchhhhHH-HHHHHHHHhhhCCCCC-------hHHHHHHHHHHHHHHhhhHhhhhhc-CChHHHHHHHhhhh
Q 001584 231 DELIESPAPLLGDSVK-SIVHFSLEVSSSHNLE-------PNTRHQAIQIISWLAKYKYNSLKKH-KLVIPILQVMCPLL 301 (1049)
Q Consensus 231 ~~l~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~-------~~~r~~a~~~l~~l~~~~~~~~~~~-~~~~~il~~l~~~l 301 (1049)
-.+...++..|...+- .++..++.++.+-..+ +-....+...+..++......+... ..++.++..+....
T Consensus 1199 F~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~lL~~~~~ll~~ci 1278 (1514)
T KOG0929|consen 1199 FDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFKQLNNLLPKVLGLLVGCI 1278 (1514)
T ss_pred HHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9888777766666553 4555555555442221 2222333333333333222222211 23334444444434
Q ss_pred ccCCCCCCCCCCcHHHHHHHHHHHHHHHcc
Q 001584 302 AESNEAGEDDDLAPDRAAAEVIDTMALNLA 331 (1049)
Q Consensus 302 ~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~ 331 (1049)
...++ ...+.+..|+..+....|
T Consensus 1279 ~~~n~-------~la~~g~~cl~~l~~~n~ 1301 (1514)
T KOG0929|consen 1279 KQDNQ-------QLARIGTSCLLQLVSSNG 1301 (1514)
T ss_pred cCcch-------hhHHhHHHHHHHHHHhcc
Confidence 44333 567777788877776666
No 271
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=88.24 E-value=8.8 Score=33.41 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhh---hHHHHHHHhcc--C------CChHHHHHHHHHHH
Q 001584 376 LESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE---SVLPCILNALE--D------ESDEVKEKSYYALA 444 (1049)
Q Consensus 376 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~---~ll~~l~~~l~--~------~~~~v~~~a~~~l~ 444 (1049)
...++.++...|++.++.|+..++.+|..++...++.+...+. .++..+.+.-. | ....||..|-.++.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 5688999999999999999999999999999988877765443 23333333222 2 23468888888877
Q ss_pred HHH
Q 001584 445 AFC 447 (1049)
Q Consensus 445 ~l~ 447 (1049)
.+.
T Consensus 116 ~if 118 (122)
T cd03572 116 AIF 118 (122)
T ss_pred HHh
Confidence 664
No 272
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=88.24 E-value=14 Score=35.82 Aligned_cols=74 Identities=14% Similarity=0.173 Sum_probs=50.1
Q ss_pred HHHhhcCCCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccc
Q 001584 465 LLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARME 541 (1049)
Q Consensus 465 l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 541 (1049)
+...++-.....-..++..++.+....+....+++..++..+-+.-... +...|..+-.|+|...+++|++.+-
T Consensus 5 ~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~---~f~~~~~~e~~lgaAi~amGpe~vL 78 (198)
T PF08161_consen 5 LESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESE---DFSFRKELEQVLGAAIRAMGPEQVL 78 (198)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCC---CcchHHHHHHHHHHHHHHCCHHHHH
Confidence 3344544556677788888888888888776666666655555544332 3456667778889888888886644
No 273
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=87.90 E-value=50 Score=36.84 Aligned_cols=215 Identities=14% Similarity=0.144 Sum_probs=120.9
Q ss_pred hhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhh-HhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHH
Q 001584 241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYK-YNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAA 319 (1049)
Q Consensus 241 ~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~-~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a 319 (1049)
|...+..+++.++.+-.++...+ ..+.++..+..+. ++.-....++.+++..++..+...+. .+|...
T Consensus 43 f~~~flr~vn~IL~~Kk~~si~d----Ril~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk-------~VR~r~ 111 (885)
T COG5218 43 FSEEFLRVVNTILACKKNPSIPD----RILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDK-------KVRKRS 111 (885)
T ss_pred hHHHHHHHHHHhhccccCCCcHH----HHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcch-------hHHHHH
Confidence 34445556666665555443322 2345555665532 11111123555566555554444333 789989
Q ss_pred HHHHHHHHHHcc---hhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhc-CCCChhHH
Q 001584 320 AEVIDTMALNLA---KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGAL-RDPEQFVR 395 (1049)
Q Consensus 320 ~~~l~~l~~~~~---~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l-~d~~~~vr 395 (1049)
.+.+..++...+ +.++..++..+..-+-+....+|.-|+.+|...-+-..+. + ..+...+...+ +||+..||
T Consensus 112 lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne--e--n~~~n~l~~~vqnDPS~EVR 187 (885)
T COG5218 112 LQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE--E--NRIVNLLKDIVQNDPSDEVR 187 (885)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh--H--HHHHHHHHHHHhcCcHHHHH
Confidence 999999888877 5667888888888888888899999999998876542221 1 12333333333 59999999
Q ss_pred HHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHH-HHHHHHHHHhhccccccchHHHHHHHHHhhcCCCH
Q 001584 396 GAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKS-YYALAAFCEDMGEEILPFLDPLMGKLLAALENSPR 474 (1049)
Q Consensus 396 ~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a-~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~ 474 (1049)
.+|+.-+. .. +...|.+++...|-+...|.-. ..+|-.+-+....++.+.+- .+--.+.+.+.
T Consensus 188 r~allni~---vd---------nsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~----l~ewgl~dRe~ 251 (885)
T COG5218 188 RLALLNIS---VD---------NSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRIL----LMEWGLLDREF 251 (885)
T ss_pred HHHHHHee---eC---------CCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceeh----hhhhcchhhhh
Confidence 98864332 11 1245666666666654333221 12233322222223333322 22233455667
Q ss_pred hHHHHHHHHHHH
Q 001584 475 NLQETCMSAIGS 486 (1049)
Q Consensus 475 ~v~~~~~~~l~~ 486 (1049)
.++.++..+|++
T Consensus 252 sv~~a~~d~ia~ 263 (885)
T COG5218 252 SVKGALVDAIAS 263 (885)
T ss_pred hHHHHHHHHHHH
Confidence 778777777664
No 274
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.74 E-value=26 Score=44.09 Aligned_cols=105 Identities=15% Similarity=0.095 Sum_probs=80.6
Q ss_pred HHhhhcCCChhHHhHHHHHHHHHhhcCh-HHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhH
Q 001584 342 ASVSCQNASPKYREAAVTAIGIISEGCA-EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESV 420 (1049)
Q Consensus 342 l~~~l~~~~~~~r~~al~~l~~i~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l 420 (1049)
+...+...|...|.-|+..++.+.+... +.....++.......++..|++..||.+....+..+...++..+.+|+..+
T Consensus 46 I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~l 125 (1312)
T KOG0803|consen 46 IVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSL 125 (1312)
T ss_pred HHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 3344556788899999999988887643 222333455555566677899999999999999999999998899999999
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHH
Q 001584 421 LPCILNALEDESDEVKEKSYYALAAF 446 (1049)
Q Consensus 421 l~~l~~~l~~~~~~v~~~a~~~l~~l 446 (1049)
+|..+-+.-|....|..+|...+...
T Consensus 126 i~~wl~~~~d~~~~vs~aa~~sf~~~ 151 (1312)
T KOG0803|consen 126 IPPWLGGQFDLDYPVSEAAKASFKDG 151 (1312)
T ss_pred hhhhhheecccchHHHHHHHHHHHhh
Confidence 99999888888777776666665543
No 275
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=87.65 E-value=46 Score=36.14 Aligned_cols=218 Identities=14% Similarity=0.171 Sum_probs=116.5
Q ss_pred cCCHHHHHHHHHHHHHHhccCCc---chhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHH
Q 001584 217 SGEEDVAVIAFEIFDELIESPAP---LLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPI 293 (1049)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~i 293 (1049)
+++.+++..+.+++.-++..... +.+-+++.++- ..+..+...+.-|.+|+.++..+.+.... ...+-..+
T Consensus 36 ~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii---~SL~~~~~~~~ER~QALkliR~~l~~~~~---~~~~~~~v 109 (371)
T PF14664_consen 36 SDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFII---RSLDRDNKNDVEREQALKLIRAFLEIKKG---PKEIPRGV 109 (371)
T ss_pred CCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhH---hhhcccCCChHHHHHHHHHHHHHHHhcCC---cccCCHHH
Confidence 44578888888888766654321 11112222222 22222223466799999999999876221 11133456
Q ss_pred HHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhch-HHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcCh--H
Q 001584 294 LQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVF-PPVFEFASVSCQNASPKYREAAVTAIGIISEGCA--E 370 (1049)
Q Consensus 294 l~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~-~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~--~ 370 (1049)
+..+.....+.++ ..+..+.+++..++-..|+-+. ..-+..+.+.+.++....-...+.++-.+.+... .
T Consensus 110 vralvaiae~~~D-------~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~ 182 (371)
T PF14664_consen 110 VRALVAIAEHEDD-------RLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRK 182 (371)
T ss_pred HHHHHHHHhCCch-------HHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhh
Confidence 6666666655333 7888888888887765553221 1122233333333333355566666666666532 2
Q ss_pred HHHH--hHHHHHHHHHhh----cCCCCh-hHHHHHHHHHHHhHhhhcHHH---HhhhhhHHHHHHHhccCCChHHHHHHH
Q 001584 371 WMKE--KLESVLHIVLGA----LRDPEQ-FVRGAASFALGQFAEYLQPEI---VSHYESVLPCILNALEDESDEVKEKSY 440 (1049)
Q Consensus 371 ~~~~--~l~~i~~~l~~~----l~d~~~-~vr~~a~~~l~~l~~~~~~~~---~~~~~~ll~~l~~~l~~~~~~v~~~a~ 440 (1049)
.+.. .++.++..+... ..+.+. ..-..+..++..+....+.-+ .+.+ .-+..++..|.-+++++|....
T Consensus 183 yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~-~~lksLv~~L~~p~~~ir~~Il 261 (371)
T PF14664_consen 183 YLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF-RGLKSLVDSLRLPNPEIRKAIL 261 (371)
T ss_pred hhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc-hHHHHHHHHHcCCCHHHHHHHH
Confidence 2333 244555444443 222221 233344555655555443211 0111 4677788888888888888877
Q ss_pred HHHHHHHH
Q 001584 441 YALAAFCE 448 (1049)
Q Consensus 441 ~~l~~l~~ 448 (1049)
..+-.+..
T Consensus 262 dll~dllr 269 (371)
T PF14664_consen 262 DLLFDLLR 269 (371)
T ss_pred HHHHHHHC
Confidence 77776654
No 276
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=87.65 E-value=81 Score=39.70 Aligned_cols=75 Identities=16% Similarity=0.165 Sum_probs=51.2
Q ss_pred hhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcchhhHH-HHHHHhhhhhhCCCCCChhHHhhHHHHHHHHHHhCC
Q 001584 865 DRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYY-GDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNP 941 (1049)
Q Consensus 865 ~~i~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~~~~~~~a~~~l~~i~~~~~ 941 (1049)
...+..+++.|.+....+..|+|.+|+.|....+.+-.-.+ ...+..|.+++.. .+.++...+++++-.++...|
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhS--KhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHS--KHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhh--hhhhhhhhHHHHHHHHhcCCc
Confidence 47788999999999999999999999999887764321112 1223445555532 345666677777777766543
No 277
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=87.60 E-value=11 Score=37.42 Aligned_cols=76 Identities=21% Similarity=0.308 Sum_probs=56.1
Q ss_pred HHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHh
Q 001584 336 PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS 415 (1049)
Q Consensus 336 ~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 415 (1049)
+...+.+.++..|++.-.|.+++.++...... ...+.++..+...+.|++..||.+..|+|..++...++...+
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~ 192 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLE 192 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 56777888889998877777776555333332 456788889899999999999999999999999887655444
Q ss_pred hh
Q 001584 416 HY 417 (1049)
Q Consensus 416 ~~ 417 (1049)
++
T Consensus 193 ~l 194 (213)
T PF08713_consen 193 FL 194 (213)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 278
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=87.58 E-value=57 Score=40.94 Aligned_cols=113 Identities=12% Similarity=0.120 Sum_probs=63.5
Q ss_pred HHHHHHHHhhcCC----CChhHHHHHHHHHHHhHhhhcH--HHHhh--hhhHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 001584 377 ESVLHIVLGALRD----PEQFVRGAASFALGQFAEYLQP--EIVSH--YESVLPCILNALEDESDEVKEKSYYALAAFCE 448 (1049)
Q Consensus 377 ~~i~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~--~~~~~--~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~ 448 (1049)
+.-+.+++..|.- ....+-..+--.|..++.++.. ...+. -...+..|++.|++.+-.|-..+|.+|.++.-
T Consensus 480 DGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSA 559 (2195)
T KOG2122|consen 480 DGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 559 (2195)
T ss_pred cchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhc
Confidence 3444555555542 1223444444455555444421 11111 13477888888888877788889999999887
Q ss_pred hhcccccc-chHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHH
Q 001584 449 DMGEEILP-FLDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (1049)
Q Consensus 449 ~~~~~l~~-~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~ 489 (1049)
..+++-.- +=..-+..|.+++.+.+..+...+..++-.+..
T Consensus 560 R~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 560 RSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred CCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 66542211 112335566677777777666666666655543
No 279
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=87.20 E-value=2.5 Score=32.78 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=41.8
Q ss_pred HHhHHHHHHHHHhhcChH-HHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhh
Q 001584 353 YREAAVTAIGIISEGCAE-WMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYL 409 (1049)
Q Consensus 353 ~r~~al~~l~~i~~~~~~-~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~ 409 (1049)
..+++++++|.++..... .+.+ -.++++.+++... .|...+|..|+++|+-++...
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~-~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLD-ESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHh-hcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 467999999999875321 1111 1257888887765 789999999999999998874
No 280
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=87.14 E-value=42 Score=35.13 Aligned_cols=174 Identities=11% Similarity=0.065 Sum_probs=97.7
Q ss_pred hCCCCChHHHHHHHHHHHHHHhhhHhh-hhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhch
Q 001584 257 SSHNLEPNTRHQAIQIISWLAKYKYNS-LKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVF 335 (1049)
Q Consensus 257 ~~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~ 335 (1049)
-++....+|...|+++...+.+.-+.. ..+ .+.-..+.+++.+....- +++......++..--.+|..+.
T Consensus 63 L~P~LPsGVH~KaLevY~~IF~~ig~~~L~~--dl~i~~~GLfpl~~~asi-------~Vkp~lL~i~e~~~lpL~~~L~ 133 (307)
T PF04118_consen 63 LNPALPSGVHQKALEVYEYIFERIGPDGLAQ--DLPIYSPGLFPLFSYASI-------QVKPQLLDIYEKYYLPLGPALR 133 (307)
T ss_pred cCCCCChHHHHHHHHHHHHHHHhcCHHHHHh--hcHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHhcCccHHHH
Confidence 346678899999999888776543321 211 222345666666655432 4455555555554444554333
Q ss_pred HHHHHH---HHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhc--
Q 001584 336 PPVFEF---ASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ-- 410 (1049)
Q Consensus 336 ~~ll~~---l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-- 410 (1049)
|.+-+. +...+.+++.......+..+..+.+...+. .+...++..+- .+|.+|..|...+.+-.....
T Consensus 134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~------~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~~ 206 (307)
T PF04118_consen 134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK------YFWQCLWLCII-TSPSRRLGALNYLLRRLPKFQND 206 (307)
T ss_pred HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh------HHHHHHHHHHh-cCcchhHHHHHHHHHhCCccccc
Confidence 333333 333455555556666666666666654432 23344444433 456788888776655433322
Q ss_pred ------HHH----HhhhhhHHHHHHHhccCCChHHHHHHHHHHHHH
Q 001584 411 ------PEI----VSHYESVLPCILNALEDESDEVKEKSYYALAAF 446 (1049)
Q Consensus 411 ------~~~----~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l 446 (1049)
++. .+.-.-++.++..+++|++.-|+..+...|..-
T Consensus 207 ~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~ 252 (307)
T PF04118_consen 207 ELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSH 252 (307)
T ss_pred ccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHh
Confidence 011 112245788889999999888888777666543
No 281
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.76 E-value=70 Score=37.29 Aligned_cols=275 Identities=15% Similarity=0.149 Sum_probs=161.1
Q ss_pred hHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcC------CCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhc-----
Q 001584 2 AQSLELLLIQFLM-PDNDARRQAEDQIKRLAKD------PQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHW----- 68 (1049)
Q Consensus 2 ~~~l~~ll~~~~s-~d~~~r~~a~~~L~~~~~~------p~~~~~l~~il~~~-~~~~~R~~a~~~l~~~i~~~w----- 68 (1049)
+|.+..+..-.-+ .=.+.|+.|---|+.+.+. ...+..+++.+..+ .+++.-.++.-.+-..+.+--
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~ 100 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVM 100 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhc
Confidence 4667777777743 4577899999889887543 34567888888875 578877777666666554321
Q ss_pred --cCCCHHHHHH----------HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCC-----CCCcchHHHHHHhccCCC
Q 001584 69 --AKLSPQLKQL----------VKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA-----GEWPDLLPFLFQFSQSEQ 131 (1049)
Q Consensus 69 --~~~~~~~~~~----------i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~-----~~w~~ll~~l~~~l~~~~ 131 (1049)
+.-+++.-.+ ....+++.+. +-+-.||..+.+.+..+.+...++ -..|.-+..++..+.+.-
T Consensus 101 dds~qsdd~g~~iae~fik~qd~I~lll~~~e-~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr 179 (970)
T KOG0946|consen 101 DDSTQSDDLGLWIAEQFIKNQDNITLLLQSLE-EFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR 179 (970)
T ss_pred ccchhhhHHHHHHHHHHHcCchhHHHHHHHHH-hhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh
Confidence 1111121122 2234444444 578899999999999998765432 124566778888888777
Q ss_pred HHHHHHHHHHHHHhhhhhhhc-----ccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHH
Q 001584 132 EEHREVALILFSSLTETIGQT-----FRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPS 206 (1049)
Q Consensus 132 ~~~~~~al~~l~~l~~~~~~~-----~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 206 (1049)
.-+|..++..+..+....+.. |..-+..++.++..-=.. ...-|..-++..+.++...-..+...-.-..++|.
T Consensus 180 E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~-dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~r 258 (970)
T KOG0946|consen 180 EPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGL-DGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPR 258 (970)
T ss_pred hhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHHHHhhCcchhhHHhccccHHH
Confidence 778899999999998776531 233344444444332111 23346777788888888765544333333578888
Q ss_pred HHHHHHHHhhcCC-----HHHH----HHHHHHHHHHhccCCcchhh-----hH--HHHHHHHHHhhhCCCCChHHHHHHH
Q 001584 207 ILNVSRQCLASGE-----EDVA----VIAFEIFDELIESPAPLLGD-----SV--KSIVHFSLEVSSSHNLEPNTRHQAI 270 (1049)
Q Consensus 207 ll~~l~~~l~~~~-----~~~~----~~~~~~l~~l~~~~~~~~~~-----~~--~~l~~~l~~~~~~~~~~~~~r~~a~ 270 (1049)
+...+.-..-.++ ..-+ ..++.++..++.-....-.. .+ ..++..++.++-++....+++..++
T Consensus 259 L~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesi 338 (970)
T KOG0946|consen 259 LLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESI 338 (970)
T ss_pred HHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHH
Confidence 8766543332221 1122 23333333333322111000 01 1345556666666657777887776
Q ss_pred HHHHHHHh
Q 001584 271 QIISWLAK 278 (1049)
Q Consensus 271 ~~l~~l~~ 278 (1049)
..+..++.
T Consensus 339 itvAevVR 346 (970)
T KOG0946|consen 339 ITVAEVVR 346 (970)
T ss_pred HHHHHHHH
Confidence 66665553
No 282
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=86.75 E-value=45 Score=35.13 Aligned_cols=205 Identities=18% Similarity=0.170 Sum_probs=115.1
Q ss_pred cCCChhHHhHHHHHHH--HHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhc--HHHHhhhhhHHH
Q 001584 347 QNASPKYREAAVTAIG--IISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ--PEIVSHYESVLP 422 (1049)
Q Consensus 347 ~~~~~~~r~~al~~l~--~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~ll~ 422 (1049)
.+.+.+.|.+++..+. .+++..++.+.+....+...+..+++-|...-+..+...+|..+...+ +..........|
T Consensus 70 ~dk~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~q~~ee~~~t~~~ 149 (427)
T KOG2842|consen 70 KDKSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPGQEEEEWTKTLGP 149 (427)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCcchhhHHHhccch
Confidence 4456788999887654 445667788888888889999999998877766666666666666554 333445555666
Q ss_pred HHHHhccCCC--hHHHHHHHHHHHHHHHhhccc---cccchHHHHHHHHHh-hcCC---------CHhHHHHHHHHHHHH
Q 001584 423 CILNALEDES--DEVKEKSYYALAAFCEDMGEE---ILPFLDPLMGKLLAA-LENS---------PRNLQETCMSAIGSV 487 (1049)
Q Consensus 423 ~l~~~l~~~~--~~v~~~a~~~l~~l~~~~~~~---l~~~~~~ll~~l~~~-l~~~---------~~~v~~~~~~~l~~l 487 (1049)
.+...+.+.+ ...+..++.++..-+-..... +..++..+....... +... .......++.+|+-+
T Consensus 150 ~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~ 229 (427)
T KOG2842|consen 150 FLALILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLEESFGAVYLEDDETVVVCACQNLGLLLTCLTAWSLL 229 (427)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcccCCCccccccchhHHHHHHHHHHHHH
Confidence 6665555554 445566666666544333211 111111111111111 1111 122344555555555
Q ss_pred HHHhhhhccccHH-HHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHH
Q 001584 488 AAAAEQAFIPYAE-RVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAA 551 (1049)
Q Consensus 488 ~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l 551 (1049)
....+.....+.. ..+|-+..++..........++.+...+..+++....+.+.|.-+++...+
T Consensus 230 Lti~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d~e~l~~~l 294 (427)
T KOG2842|consen 230 LTICPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQDSEFDFIYPDMEQLLSTL 294 (427)
T ss_pred HHcCccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhcccccccCCCHHHHHHHH
Confidence 4444433333332 255667776655443333345556677777777665555666666666553
No 283
>PLN03205 ATR interacting protein; Provisional
Probab=86.50 E-value=34 Score=35.92 Aligned_cols=181 Identities=15% Similarity=0.145 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhh-------cccccHHHHHHHHHHhhC
Q 001584 97 RASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ-------TFRPHFADMQALLLKCLQ 169 (1049)
Q Consensus 97 ~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~-------~~~~~~~~l~~~l~~~l~ 169 (1049)
.++.++...+.+.....-....+++.|+.++.-++..+...+++++..+.++.-. .....|..++.+..+...
T Consensus 302 ekVshlYs~~tKiS~G~V~lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv 381 (652)
T PLN03205 302 EKVYHLYSAVTKISYGFVNLKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIAS 381 (652)
T ss_pred HHHHHHHHHHHHhhCCeeeHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHh
Confidence 4556666666553322224577899999999888888888999999988877532 123456667777766554
Q ss_pred CCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHhccC-----------
Q 001584 170 DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLAS-GEEDVAVIAFEIFDELIESP----------- 237 (1049)
Q Consensus 170 ~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~-~~~~~~~~~~~~l~~l~~~~----------- 237 (1049)
......||..|+..+..++...+...+...|.. ..+++.+.++++. ..-.+++.++..|--+....
T Consensus 382 ~~TEE~VrLEAvSIMnVIlmssna~~eREkFG~--~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFcSg~~ 459 (652)
T PLN03205 382 IRTEEDVKLEALSIMNIIVMSTDAYTARESFVS--KEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFDSLHE 459 (652)
T ss_pred ccchhheeeehhhhhHHhhhccchhHHHHHhcc--hHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHhcCCc
Confidence 447788999999988887766644334444421 2345555555543 23345566665554433221
Q ss_pred ----------C---cchhhhHHHHHHHHHHhh---hCCCCChHHHHHHHHHHHHHHhh
Q 001584 238 ----------A---PLLGDSVKSIVHFSLEVS---SSHNLEPNTRHQAIQIISWLAKY 279 (1049)
Q Consensus 238 ----------~---~~~~~~~~~l~~~l~~~~---~~~~~~~~~r~~a~~~l~~l~~~ 279 (1049)
. ..-...+..++.-+-+.. .+...+.+.+..++-++..++..
T Consensus 460 e~~~ad~eNd~~~n~st~k~fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASS 517 (652)
T PLN03205 460 EKNSSDTENDSEGNFFALEAFGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASS 517 (652)
T ss_pred cccccccccccccccccHHHHHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhc
Confidence 0 011223334444443333 22334567788888777777653
No 284
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=86.47 E-value=1.1 Score=30.32 Aligned_cols=40 Identities=25% Similarity=0.222 Sum_probs=28.9
Q ss_pred HHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHH
Q 001584 360 AIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFA 401 (1049)
Q Consensus 360 ~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~ 401 (1049)
+++.+.+..+..+.. +.+...+...+.|+++.||.+|...
T Consensus 2 ~l~~iv~~dp~ll~~--~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDS--SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccch--HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 355555554443322 3788899999999999999999865
No 285
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=86.46 E-value=17 Score=32.67 Aligned_cols=75 Identities=9% Similarity=0.104 Sum_probs=59.7
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhccCCC--hHHHHHHHHHHHHHHHhhcc
Q 001584 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDES--DEVKEKSYYALAAFCEDMGE 452 (1049)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~~~--~~v~~~a~~~l~~l~~~~~~ 452 (1049)
..+..+...+.+++|.+...|+..|..+...++..+...+ ..++..+...+.++. +.|+..++..+......+..
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 5677888899999999999999999999999987765433 456677776666543 34999999999999888854
No 286
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.46 E-value=99 Score=38.74 Aligned_cols=247 Identities=14% Similarity=0.172 Sum_probs=127.6
Q ss_pred CCHHHHHHHHHHHHHHHh----ccCCCCCCcchHHHHHHhccCC---CHHHHHHHHHHHHHhhhhhhhcc-cccHHHHHH
Q 001584 91 HSAPVRRASANVVSIIAK----YAVPAGEWPDLLPFLFQFSQSE---QEEHREVALILFSSLTETIGQTF-RPHFADMQA 162 (1049)
Q Consensus 91 ~~~~vr~~~~~~l~~i~~----~~~~~~~w~~ll~~l~~~l~~~---~~~~~~~al~~l~~l~~~~~~~~-~~~~~~l~~ 162 (1049)
+...+|..--.++-.|.. +.+ ..|+.+++.+-.....+ +.+....|+.+|.-+..++-..+ ...+..++.
T Consensus 854 ~~~evr~~sl~~l~silet~ge~ll--~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lid 931 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILETVGEHLL--HGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLID 931 (1610)
T ss_pred ccceeeHHHHHHHHHHHhccchhhc--cccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHH
Confidence 344455444455544443 333 24999998888776655 44566678888887776543322 233445555
Q ss_pred HHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchh
Q 001584 163 LLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLG 242 (1049)
Q Consensus 163 ~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~ 242 (1049)
.+...-....+.++-..|+..+-.+-++...+ .-..++........+.+.. ..+ .+
T Consensus 932 tl~~fs~QktdlNISltAi~lfWtvsDfl~~k-------------------m~S~sed~~~~~~~e~~~s---s~~--~~ 987 (1610)
T KOG1848|consen 932 TLLVFSRQKTDLNISLTAIGLFWTVSDFLKNK-------------------MFSTSEDSCAYNSVEDLYS---SMK--SK 987 (1610)
T ss_pred HHHHHHhhhccccccHHHHHHHHHHHHHHHhh-------------------hhccchhhhhhcchhhhcc---ccc--ch
Confidence 55555443355666666655543333333110 0011111111111111111 000 01
Q ss_pred hhHHHHH-----HHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhcc--------CCCCCC
Q 001584 243 DSVKSIV-----HFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAE--------SNEAGE 309 (1049)
Q Consensus 243 ~~~~~l~-----~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~--------~~~~~~ 309 (1049)
-.+++.+ ..+.+.+.+. -.++|..|++.+-.+...++..+.+..+..-+...++|+|.. +..++.
T Consensus 988 ~~l~e~lwi~ll~~L~~~~~ds--r~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkei 1065 (1610)
T KOG1848|consen 988 EILPEVLWIMLLVHLADLCEDS--RAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEI 1065 (1610)
T ss_pred hhhhhHHHHHHHHHHHHHhccc--hHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhH
Confidence 1222222 2222344333 578999999988777665554444433444466777788762 221111
Q ss_pred CCCCcHHHHHHHHHHHHHHHcc------------hhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhc
Q 001584 310 DDDLAPDRAAAEVIDTMALNLA------------KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEG 367 (1049)
Q Consensus 310 d~~~~~~~~a~~~l~~l~~~~~------------~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~ 367 (1049)
.++|+ ......++.+++.++ -++|..+++++.....+.+.+...+++.++..+..+
T Consensus 1066 qkqwt--et~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1066 QKQWT--ETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred hhhhh--hhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 12232 112223333332221 356888999998888888999999999888776543
No 287
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=86.24 E-value=33 Score=33.05 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=58.3
Q ss_pred hHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHH
Q 001584 335 FPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI 413 (1049)
Q Consensus 335 ~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 413 (1049)
....++.+.+...+++...|..|+..++.+...-- -+=...+|.++....||++.+|..|...+..+.+..+.-+
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGL----vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGL----VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCC----CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 34556666667788999999999999999887410 0112678999999999999999999999998888765443
No 288
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=86.13 E-value=6.7 Score=35.25 Aligned_cols=76 Identities=12% Similarity=0.136 Sum_probs=59.0
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccc-cchH-HHHHHHHHhhcC---CCHhHHHHHHHHHHHHHHHhh
Q 001584 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEIL-PFLD-PLMGKLLAALEN---SPRNLQETCMSAIGSVAAAAE 492 (1049)
Q Consensus 418 ~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~-~~~~-~ll~~l~~~l~~---~~~~v~~~~~~~l~~l~~~~~ 492 (1049)
...+..|-+.++.+++.++..|+..|..++++++..+. .+.. ..+..+..++.. .+..|+..+++.+..-....+
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34777888889999999999999999999999987543 2333 555567676654 467899999999988887765
Q ss_pred h
Q 001584 493 Q 493 (1049)
Q Consensus 493 ~ 493 (1049)
.
T Consensus 116 ~ 116 (133)
T cd03561 116 G 116 (133)
T ss_pred C
Confidence 4
No 289
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=85.93 E-value=3.2 Score=35.06 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=54.0
Q ss_pred hHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHH-HHhhhhhHHHHHHHhccCC
Q 001584 369 AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE-IVSHYESVLPCILNALEDE 431 (1049)
Q Consensus 369 ~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~ll~~l~~~l~~~ 431 (1049)
++.+.++.+.++.++...+.+-.+.||..+...|.-+.+..++. +..+...+++..+..+...
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 35678899999999999999999999999999999999999887 5677777888887776644
No 290
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=85.93 E-value=3.8 Score=33.28 Aligned_cols=69 Identities=19% Similarity=0.255 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 001584 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFD 231 (1049)
Q Consensus 158 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~ 231 (1049)
..++..+...+.+.++.+||...+.|+..++....+ .+..-++.++.++.....+++++....|++++.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~-----~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGE-----NIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHH-----HHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 456666667666557899999999999999887632 356678999999988888888888888887764
No 291
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=85.47 E-value=3.7 Score=35.36 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=46.8
Q ss_pred cchHHHHHHhcc-CCCHHHHHHHHHHHHHhhhhhhhcccccHHH--HHHHHHHhhCCCCChHHHHHHHHHHHHhhc
Q 001584 117 PDLLPFLFQFSQ-SEQEEHREVALILFSSLTETIGQTFRPHFAD--MQALLLKCLQDETSNRVRIAALKAIGSFLE 189 (1049)
Q Consensus 117 ~~ll~~l~~~l~-~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~--l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~ 189 (1049)
-+++..|.+.+. +.++.....|+.=++.++...|.. ...+.. .-..+.+++.+ ++++||..|+.|+..++.
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-r~ii~~lg~K~~vM~Lm~h-~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-RNIIEKLGAKERVMELMNH-EDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-HHHHHHHSHHHHHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-HHHHHhcChHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 346667777773 335555566777788888777642 122222 34677888888 999999999999987764
No 292
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=85.43 E-value=69 Score=38.06 Aligned_cols=153 Identities=16% Similarity=0.166 Sum_probs=102.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhccCCCHHHHHHH
Q 001584 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKD---PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLV 79 (1049)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~a~~~L~~~~~~---p~~~~~l~~il~~~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i 79 (1049)
..+.+++..+-|+|..+..++...+.+.... |-++..|+...-++.+..+... +. . +....-..+
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s~~~~~i---l~-~--------~~~P~~K~~ 71 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNSQRALEI---LV-G--------VQEPHDKHL 71 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCcHHHHHH---HH-h--------cCCccHHHH
Confidence 3577899999999999999999999776532 4567777777655443332221 11 1 111111233
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCC---CCCcchHHHHHHhccC-CCHHHHHHHHHHHHHhhhhhhhcccc
Q 001584 80 KQSLIESITLEHSAPVRRASANVVSIIAKYAVPA---GEWPDLLPFLFQFSQS-EQEEHREVALILFSSLTETIGQTFRP 155 (1049)
Q Consensus 80 ~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~---~~w~~ll~~l~~~l~~-~~~~~~~~al~~l~~l~~~~~~~~~~ 155 (1049)
...|=+.+. .+.-|..+...++.+++...+. -.-..+++.|+.++.- .+..+...|+.+|..++..++..+.+
T Consensus 72 ~~~l~~~~~---~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~ 148 (668)
T PF04388_consen 72 FDKLNDYFV---KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGP 148 (668)
T ss_pred HHHHHHHHc---CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhH
Confidence 333333333 3567888888899888754221 0114577788877754 45677789999999999999998999
Q ss_pred cHHHHHHHHHHhhCC
Q 001584 156 HFADMQALLLKCLQD 170 (1049)
Q Consensus 156 ~~~~l~~~l~~~l~~ 170 (1049)
++++++.++..++.-
T Consensus 149 ~L~~Lf~If~Rl~~W 163 (668)
T PF04388_consen 149 HLPDLFNIFGRLLSW 163 (668)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999888853
No 293
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=84.91 E-value=1.4 Score=35.80 Aligned_cols=61 Identities=20% Similarity=0.148 Sum_probs=47.4
Q ss_pred hHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHH
Q 001584 352 KYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI 413 (1049)
Q Consensus 352 ~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 413 (1049)
..|++++++|+.+....+..+.+.+++++..+....+| ...|+.++-.+++.+-..-.+..
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D~W 64 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQDTW 64 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTSTTH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcccH
Confidence 47899999999999998888888899999998888887 55788899999998877665433
No 294
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=84.87 E-value=92 Score=36.97 Aligned_cols=239 Identities=13% Similarity=0.128 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHhhhhchhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHH
Q 001584 646 AAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIF 725 (1049)
Q Consensus 646 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 725 (1049)
..|+.+...+..++.+.+..|.+..+..+.++++..+++.+..++.++..++.... +++..... ++.+++++
T Consensus 74 ~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~-------d~~sy~~~-yd~Fi~kf 145 (819)
T KOG1877|consen 74 KIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEE-------DGPSYHRN-YDFFISKF 145 (819)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcc-------cCchhhhh-hHHHHHHH
Confidence 45777888888888888888889999999999888788999999999988876532 23222222 45556666
Q ss_pred HHHhhhCChHH----HHHHHHHHHHHHHHHhCC-----cccHH-HHHHHHHHHHHHHHhhhhhcCCCCCC----CCCc-c
Q 001584 726 IRTMTEDDDKD----VVAQACTSIVEIINDYGY-----MAVEP-YMSRLVDATLLLLREESTCQQPDNDS----DIED-D 790 (1049)
Q Consensus 726 ~~~l~~~~~~~----~~~~~~~~l~~~i~~~g~-----~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~~----~~~~-~ 790 (1049)
.+...+..+.+ .+.+-+.++..++...-. ..... +++.+++.+...++.....-..+.+. .... .
T Consensus 146 ~~l~he~~~~~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~~~e~~~~~~S~s~~~~~~~~~a 225 (819)
T KOG1877|consen 146 SSLCHERGDDDMKDCLRAAGLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQSIENLGKRESDSRIRTFSLLAA 225 (819)
T ss_pred HHHhhcccchhhhhhccHhhhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhcchhhcccccCcccccCcccccc
Confidence 55554433332 233445555555443311 11122 35666665554444322100000000 0000 0
Q ss_pred ccchhhHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhccCCCcccc-hhhhHhHHHHHhhcCCc-hhhcHhhhH
Q 001584 791 DDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDR-TMVVATLAEVARDMGSP-IAAYVDRVM 868 (1049)
Q Consensus 791 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r-~~a~~~l~~l~~~~~~~-~~~~~~~i~ 868 (1049)
.+...+..+. +-.|+..+.... .+...+...+..++..+....-|... .+|+.++..++-....+ ...++..++
T Consensus 226 ~~~~~~p~vl--a~~cl~~l~~~A--~~g~~iR~~l~pl~~~~d~h~~w~p~n~fav~~~~~vi~~iq~q~s~~v~~~li 301 (819)
T KOG1877|consen 226 GDKTSDPKVL--AERCLRELLGRA--KFGTNIRNALKPLLSHLDFHELWTPPNGFAVHVFKIVIYLIQRQYSYFVIQELI 301 (819)
T ss_pred CCcccCcchh--HHHHHHHhhccc--cccchHHHHHHHHHhccccceeecCCCccchHHHHHHHHHHhhccchHHHHHHH
Confidence 0111111221 233444443332 33335566666666665554444444 67888888777654433 233455666
Q ss_pred HHHHHhc-CCCChHhHHHHHHHHHHHHhh
Q 001584 869 PLVLKEL-ASPDAMNRRNAAFCVGELCKN 896 (1049)
Q Consensus 869 ~~l~~~l-~~~~~~vr~~a~~~lg~l~~~ 896 (1049)
..+.... ....+..+-+.+++=+.++..
T Consensus 302 ~hLd~~~~~~~~~r~~~~iv~~~~~~i~~ 330 (819)
T KOG1877|consen 302 NHLDNKKLVAKKPRLGLSIVLVSIALIAA 330 (819)
T ss_pred HHHHhhcccccCccccchhHHHHHHHHHh
Confidence 6655443 344455554544444444433
No 295
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=84.86 E-value=18 Score=32.89 Aligned_cols=91 Identities=14% Similarity=0.167 Sum_probs=65.9
Q ss_pred HHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhccccH--HHHHHHHHHHHhccChh-hhhhH
Q 001584 445 AFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMVLTNDE-DLRSR 521 (1049)
Q Consensus 445 ~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~-~~~~r 521 (1049)
.+++..... .......+..+..-+.+.+++++..++..+..+...+|..|...+ ..++..+..++...... ...+|
T Consensus 28 ~icD~i~~~-~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk 106 (140)
T PF00790_consen 28 EICDLINSS-PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVK 106 (140)
T ss_dssp HHHHHHHTS-TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHH
T ss_pred HHHHHHHcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHH
Confidence 344444322 334567788888889999999999999999999999998876554 45777787777644322 22378
Q ss_pred HHHHHHHHHHHHhhc
Q 001584 522 ARATELLGLVAESVG 536 (1049)
Q Consensus 522 ~~a~~~l~~l~~~~~ 536 (1049)
.++++.+...+..++
T Consensus 107 ~k~l~ll~~W~~~f~ 121 (140)
T PF00790_consen 107 EKILELLQEWAEAFK 121 (140)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHC
Confidence 888888888887774
No 296
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=84.64 E-value=4.6 Score=32.83 Aligned_cols=70 Identities=11% Similarity=0.118 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCC--CCCCcchHHHHHHhccCCCHHHHHHHHHHHHH
Q 001584 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVP--AGEWPDLLPFLFQFSQSEQEEHREVALILFSS 144 (1049)
Q Consensus 75 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~--~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~ 144 (1049)
.+..+...+...+.+.++..+|..+..++..+...... ...|+.++..+.....+++..+...|+.++..
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 45556566666666667899999999999988763221 25899999999999988888888888888764
No 297
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=84.63 E-value=28 Score=37.24 Aligned_cols=95 Identities=13% Similarity=0.151 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcC
Q 001584 392 QFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN 471 (1049)
Q Consensus 392 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~ 471 (1049)
..++.....+|+.+..+...--+..-++++..+..++.+. ....+..+|.-.+-..+..+.++++.++..+.+...
T Consensus 211 ~D~~~~~~~~Ls~LisYh~~~~k~~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~t- 286 (356)
T PF03542_consen 211 ADLQVCVFPVLSALISYHSHFSKQEQDEIVRALESGLGSK---TAKPCIHALTICCYEMPDSMKKLLPSILLKLSKIST- 286 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc-
Confidence 3566677777777776643111223457888888888764 335577778777778888888899999988876644
Q ss_pred CCHhHHHHHHHHHHHHHHHh
Q 001584 472 SPRNLQETCMSAIGSVAAAA 491 (1049)
Q Consensus 472 ~~~~v~~~~~~~l~~l~~~~ 491 (1049)
...+....++.++.++..-
T Consensus 287 -t~~~Ai~ILEFLs~L~~lP 305 (356)
T PF03542_consen 287 -TPNMAIHILEFLSSLSRLP 305 (356)
T ss_pred -chhhHHHHHHHHHHHhhCc
Confidence 3456677999999887643
No 298
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=84.33 E-value=52 Score=33.68 Aligned_cols=188 Identities=12% Similarity=0.068 Sum_probs=89.7
Q ss_pred HhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCc-ch-hhhHHHHHHHHHHhh-hCCCCChHHHHHHHHHHHHHH
Q 001584 201 REFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP-LL-GDSVKSIVHFSLEVS-SSHNLEPNTRHQAIQIISWLA 277 (1049)
Q Consensus 201 ~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~-~~-~~~~~~l~~~l~~~~-~~~~~~~~~r~~a~~~l~~l~ 277 (1049)
.+++..+++.+..- ..+.+.+.++.++.++....|+ ++ .+.+.+=+..+.+.+ +.+.-|++++ .-++.+.+..
T Consensus 234 ~dli~dli~iVk~~---~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~-~di~~i~s~l 309 (432)
T COG5231 234 DDLINDLIAIVKER---AKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELV-IDIERIRSRL 309 (432)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHH-HHHHHHHHHH
Confidence 34444444443322 2345667788888888775433 22 222222122223333 3333344544 4456665443
Q ss_pred hh-hHhhhhhcCChHHHHHHHhhhhccCCCCC-CCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChh-HH
Q 001584 278 KY-KYNSLKKHKLVIPILQVMCPLLAESNEAG-EDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPK-YR 354 (1049)
Q Consensus 278 ~~-~~~~~~~~~~~~~il~~l~~~l~~~~~~~-~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~-~r 354 (1049)
.. ...... ....+..+..-+.+|.+.. +.|.|+. -++.+.+. .-.++..+. ..+++.++. .-
T Consensus 310 ~~~~k~l~~----fD~Y~~ELdsg~l~wSp~H~~~dFWs~------N~d~l~kd-ny~i~k~L~----~~lq~n~~nt~i 374 (432)
T COG5231 310 VQNTKKLCI----FDNYLNELDSGRLEWSPYHHKKDFWST------NLDMLIKD-NYEIVKVLK----KYLQSNNPNTWI 374 (432)
T ss_pred HhhhhhhhH----HHHHHHHHhhCcccCCCcccccCchhh------hHHHHhhh-hHHHHHHHH----HHHhcCCCCceE
Confidence 32 221111 1123333444444444332 3344532 12222210 011222333 334333322 34
Q ss_pred hHHHHHHHHHhhcChHHHHHhHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhHh
Q 001584 355 EAAVTAIGIISEGCAEWMKEKLE-SVLHIVLGALRDPEQFVRGAASFALGQFAE 407 (1049)
Q Consensus 355 ~~al~~l~~i~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 407 (1049)
..||.-++++.+..|+...--.. ..-..++..+++++++||..|+.++..+..
T Consensus 375 ~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 375 CVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred eeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 46677788888877654322111 234567788999999999999998876543
No 299
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=83.94 E-value=24 Score=32.03 Aligned_cols=113 Identities=9% Similarity=0.012 Sum_probs=72.9
Q ss_pred hcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHH
Q 001584 346 CQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLP 422 (1049)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~ 422 (1049)
+.++||..-..-+..+..=.. .-...+..+...+. ++++.|...|+..|..+.+.++..+...+ ..++.
T Consensus 14 l~~~dw~~ileicD~In~~~~--------~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~ 85 (141)
T cd03565 14 LQSEDWGLNMEICDIINETED--------GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIK 85 (141)
T ss_pred CCCcCHHHHHHHHHHHhCCCC--------cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhh
Confidence 455677665554444432111 12255667777776 57899999999999999999987765432 34555
Q ss_pred H-HHHhccC---CChHHHHHHHHHHHHHHHhhccc-cccchHHHHHHHH
Q 001584 423 C-ILNALED---ESDEVKEKSYYALAAFCEDMGEE-ILPFLDPLMGKLL 466 (1049)
Q Consensus 423 ~-l~~~l~~---~~~~v~~~a~~~l~~l~~~~~~~-l~~~~~~ll~~l~ 466 (1049)
. +.+.+.. ....|+..++..+......++.. -.+++..++..|.
T Consensus 86 e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L~ 134 (141)
T cd03565 86 DVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGSPDLTGVVEVYEELK 134 (141)
T ss_pred HHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHH
Confidence 4 5555542 34589999999999999888543 2244555555443
No 300
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=83.80 E-value=13 Score=33.59 Aligned_cols=74 Identities=8% Similarity=0.135 Sum_probs=56.1
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccch--HHHHHHHHHhhcC------CCHhHHHHHHHHHHHHHHH
Q 001584 419 SVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAALEN------SPRNLQETCMSAIGSVAAA 490 (1049)
Q Consensus 419 ~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~--~~ll~~l~~~l~~------~~~~v~~~~~~~l~~l~~~ 490 (1049)
..+..+.+.++++++.++..|+..|..++++|+..+...+ ..++..+..++.. .+..|+..++..+-.-+..
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4677788899999999999999999999999987553211 2455556666642 5688999999888877766
Q ss_pred hh
Q 001584 491 AE 492 (1049)
Q Consensus 491 ~~ 492 (1049)
.+
T Consensus 118 f~ 119 (139)
T cd03567 118 LP 119 (139)
T ss_pred hc
Confidence 54
No 301
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=83.60 E-value=5.3 Score=34.44 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=50.0
Q ss_pred HHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcHHHHhhhh--hHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 001584 378 SVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHYE--SVLPCILNALEDESDEVKEKSYYALAAFCE 448 (1049)
Q Consensus 378 ~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~ 448 (1049)
+++..+...|. +.++.+...||.=||.++...+. ....++ ..-..+++.+.+++++||..|+.|++.++.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 45666666663 44778888899999999998743 333322 345667888899999999999999998764
No 302
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=83.58 E-value=34 Score=31.02 Aligned_cols=75 Identities=17% Similarity=0.183 Sum_probs=59.3
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhccCCC--hH--HHHHHHHHHHHHHHhh
Q 001584 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDES--DE--VKEKSYYALAAFCEDM 450 (1049)
Q Consensus 377 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~~~--~~--v~~~a~~~l~~l~~~~ 450 (1049)
...+..|...|.+++|.++..|+..+..+...+++.+...+ ..++..+.+.+.++. +. |+..+...+......+
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 46778888999999999999999999999999987775543 456666666555432 22 8999999999998888
Q ss_pred c
Q 001584 451 G 451 (1049)
Q Consensus 451 ~ 451 (1049)
+
T Consensus 121 ~ 121 (140)
T PF00790_consen 121 K 121 (140)
T ss_dssp T
T ss_pred C
Confidence 3
No 303
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=83.33 E-value=67 Score=34.20 Aligned_cols=109 Identities=12% Similarity=0.117 Sum_probs=80.3
Q ss_pred HHhhhcCCChhHHhHHHHHHHHHhhcC----hHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcH--HHHh
Q 001584 342 ASVSCQNASPKYREAAVTAIGIISEGC----AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP--EIVS 415 (1049)
Q Consensus 342 l~~~l~~~~~~~r~~al~~l~~i~~~~----~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~ 415 (1049)
+.++.+.++...--.|...+..+.... .+.+..+.+.++.....++.+++-..|..+++.||.+...-.. -+..
T Consensus 169 ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~ 248 (335)
T PF08569_consen 169 FFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTR 248 (335)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHH
T ss_pred HHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHH
Confidence 445567777777777777777765543 3455667888999999999999999999999999999866432 1234
Q ss_pred hh--hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh
Q 001584 416 HY--ESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (1049)
Q Consensus 416 ~~--~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~ 450 (1049)
|+ +.-+..++..|.|++..+|..|...+..|+.+-
T Consensus 249 yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 249 YISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 44 456777888999999999999999999998774
No 304
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=83.01 E-value=31 Score=30.92 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhccccH--HHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhh
Q 001584 458 LDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESV 535 (1049)
Q Consensus 458 ~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~ 535 (1049)
-...+..+..-+.++++.++..++..+..+...+|..|...+ ..++..+..++....... .++.++++.+...+..+
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~-~Vk~kil~li~~W~~~f 113 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLP-LVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcH-HHHHHHHHHHHHHHHHH
Confidence 456677788888889999999999999999999998886544 447777777776543222 27778888888887776
Q ss_pred c
Q 001584 536 G 536 (1049)
Q Consensus 536 ~ 536 (1049)
.
T Consensus 114 ~ 114 (133)
T smart00288 114 K 114 (133)
T ss_pred c
Confidence 4
No 305
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=82.91 E-value=4.2 Score=37.80 Aligned_cols=144 Identities=16% Similarity=0.153 Sum_probs=79.1
Q ss_pred CCcHHHHHHHHhc-CCChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---
Q 001584 34 PQVVPALVQHLRT-AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKY--- 109 (1049)
Q Consensus 34 p~~~~~l~~il~~-~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~--- 109 (1049)
++-+..++.-+.. ..++.+|..+.+++-+++...- .+..+.+ ...++.+..+.+..-...+..+++.+.-.
T Consensus 2 ~~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~----~~~~~~~-~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~d 76 (157)
T PF11701_consen 2 SDELDTLLTSLDMLRQPEEVRSHALVILSKLLDAAR----EEFKEKI-SDFIESLLDEGEMDSLIIAFSALTALFPGPPD 76 (157)
T ss_dssp CCCCCHHHHHHHCTTTSCCHHHHHHHHHHHHHHHHH----HHHHHHH-HHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHH
T ss_pred hHHHHHHHHHhcccCCCHhHHHHHHHHHHHHHHHhH----HHHHHHH-HHHHHHHHccccchhHHHHHHHHHHHhCCCHH
Confidence 3344455666654 6788999999999988852211 1122222 22223332222222222344444444321
Q ss_pred ----cCCCCCCcchHHHHHHhcc--CCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChH-HHHHHHH
Q 001584 110 ----AVPAGEWPDLLPFLFQFSQ--SEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNR-VRIAALK 182 (1049)
Q Consensus 110 ----~~~~~~w~~ll~~l~~~l~--~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~-vr~~a~~ 182 (1049)
.+ .-..+++.+...+. +++......+++++..-+-.-.- -.....+..+++......+++.. +|..|+-
T Consensus 77 v~~~l~---~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~-r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v 152 (157)
T PF11701_consen 77 VGSELF---LSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSC-RTFISKNYVSWLKELYKNSKDDSEIRVLAAV 152 (157)
T ss_dssp HHHHHC---CTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHH-HHCCHHHCHHHHHHHTTTCC-HH-CHHHHHH
T ss_pred HHHHHH---hhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHH-HHHHHHHHHHHHHHHHccccchHHHHHHHHH
Confidence 11 12457778887777 67777788888888876533211 01234556778888886535566 7888877
Q ss_pred HHHH
Q 001584 183 AIGS 186 (1049)
Q Consensus 183 ~l~~ 186 (1049)
.|.+
T Consensus 153 ~L~K 156 (157)
T PF11701_consen 153 GLCK 156 (157)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
No 306
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=82.65 E-value=24 Score=32.09 Aligned_cols=98 Identities=14% Similarity=0.107 Sum_probs=70.4
Q ss_pred cCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccH--HHHHHHHHHh
Q 001584 90 EHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF--ADMQALLLKC 167 (1049)
Q Consensus 90 e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~--~~l~~~l~~~ 167 (1049)
++++..--.+|+.|.. . + ..=.+.+..|..-+.++++++...|+.++..++..++..|...+ ..++.-+.+.
T Consensus 19 ~~dw~~ileicD~In~----~-~-~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l 92 (142)
T cd03569 19 EPDLASILEICDMIRS----K-D-VQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDL 92 (142)
T ss_pred ccCHHHHHHHHHHHhC----C-C-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHH
Confidence 4566666666666642 1 1 23356777888888889999999999999999999987654433 3355555566
Q ss_pred hCCCCChHHHHHHHHHHHHhhcccCC
Q 001584 168 LQDETSNRVRIAALKAIGSFLEFTND 193 (1049)
Q Consensus 168 l~~~~~~~vr~~a~~~l~~~~~~~~~ 193 (1049)
+.+..++.|+..++..+..+......
T Consensus 93 ~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 93 IKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 55447889999999999888876643
No 307
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=82.16 E-value=50 Score=31.83 Aligned_cols=76 Identities=18% Similarity=0.212 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 001584 78 LVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPH 156 (1049)
Q Consensus 78 ~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~ 156 (1049)
...+.+++...+ ++..+|..+.++++.+.+..+.+ . .+.+|.++.+..++++.+|..|...+..+.+..+..+...
T Consensus 8 ryl~~Il~~~~~-~~~~vr~~Al~~l~~il~qGLvn-P-~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 8 RYLKNILELCLS-SDDSVRLAALQVLELILRQGLVN-P-KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHHHhcCCCC-h-HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 334456666665 89999999999999999865532 1 3478999999999999999999999999998877654433
No 308
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=81.31 E-value=87 Score=34.06 Aligned_cols=239 Identities=15% Similarity=0.130 Sum_probs=121.3
Q ss_pred hchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHH-HHHHHHHhhcC-C-CChhHHHHHHHHHHHhHhhh
Q 001584 333 HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLE-SVLHIVLGALR-D-PEQFVRGAASFALGQFAEYL 409 (1049)
Q Consensus 333 ~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~-~i~~~l~~~l~-d-~~~~vr~~a~~~l~~l~~~~ 409 (1049)
..+..+.+.++..+-+++..+|.+|+..+..+..+... +..... .+--.+...+. | .+..=|..|++.+..+.+.-
T Consensus 21 ~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~ 99 (371)
T PF14664_consen 21 LVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK 99 (371)
T ss_pred hhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc
Confidence 34556666666555555588999999999888776432 111111 11123334443 2 34556889999999998873
Q ss_pred cHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHH
Q 001584 410 QPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (1049)
Q Consensus 410 ~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~ 489 (1049)
+ .....-..++..++....+++.+.|..|...|..++-..++-+ -.... +..+.+.+.++...+.+.++.++-.+..
T Consensus 100 ~-~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv-~~~gG-~~~L~~~l~d~~~~~~~~l~~~lL~lLd 176 (371)
T PF14664_consen 100 K-GPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELV-AECGG-IRVLLRALIDGSFSISESLLDTLLYLLD 176 (371)
T ss_pred C-CcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHH-HHcCC-HHHHHHHHHhccHhHHHHHHHHHHHHhC
Confidence 2 1122224578888888888888899999988888775544311 01111 1223333333333344444444444433
Q ss_pred Hhh--hhccccH--HHHHHHHHHHH--hccChhhh-hhHHHHHHHHHHHHHhh-chhccccchHHHHHHHHhccCCCCch
Q 001584 490 AAE--QAFIPYA--ERVLELLKIFM--VLTNDEDL-RSRARATELLGLVAESV-GRARMEPILPPFVEAAISGFGLEFSE 561 (1049)
Q Consensus 490 ~~~--~~~~~~~--~~~~~~l~~~l--~~~~~~~~-~~r~~a~~~l~~l~~~~-~~~~~~~~~~~i~~~l~~~l~~~~~~ 561 (1049)
... ..+.+.+ +.++..+...- ...++.+. +++ .+..++..+-++. |-=.+...--.-+..++..+..+.++
T Consensus 177 ~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~-~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ 255 (371)
T PF14664_consen 177 SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQ-ASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPE 255 (371)
T ss_pred CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHH-HHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHH
Confidence 221 1122211 22222222210 01111111 233 2334445444433 21111111113455566677778888
Q ss_pred hhHHHHHHHHHHHHH
Q 001584 562 LREYTHGFFSNIAGV 576 (1049)
Q Consensus 562 ~r~~~~~~l~~l~~~ 576 (1049)
+|+.++..+-.+...
T Consensus 256 ir~~Ildll~dllri 270 (371)
T PF14664_consen 256 IRKAILDLLFDLLRI 270 (371)
T ss_pred HHHHHHHHHHHHHCC
Confidence 888887777666653
No 309
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=80.86 E-value=5.1 Score=33.03 Aligned_cols=57 Identities=11% Similarity=0.127 Sum_probs=45.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHcc---hhchHHHHHHHHhhhcC--CChhHHhHHHHHHHHHhh
Q 001584 310 DDDLAPDRAAAEVIDTMALNLA---KHVFPPVFEFASVSCQN--ASPKYREAAVTAIGIISE 366 (1049)
Q Consensus 310 d~~~~~~~~a~~~l~~l~~~~~---~~~~~~ll~~l~~~l~~--~~~~~r~~al~~l~~i~~ 366 (1049)
++.|..|+.|+..+..+...++ ..+-+-+...+...+.+ ..+..+++|+.+|..+..
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 5679999999999999999988 34456677766666664 357899999999999854
No 310
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.85 E-value=90 Score=33.95 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCC
Q 001584 394 VRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSP 473 (1049)
Q Consensus 394 vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~ 473 (1049)
.-..|.+.|-.+++...-+..-.-..++..++++|+..+...-....+.|..+.---.....---..++..|..++...+
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h 358 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQH 358 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCC
Confidence 33467788888888876655544566899999999988766555555544443221111111123367888889998899
Q ss_pred HhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhc
Q 001584 474 RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVL 512 (1049)
Q Consensus 474 ~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 512 (1049)
+.++...+..+-.+.--.|-.-.-.-..++|.+..++..
T Consensus 359 ~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~ 397 (791)
T KOG1222|consen 359 PDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDS 397 (791)
T ss_pred HHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCC
Confidence 999988887766554322211111123366777776654
No 311
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=80.64 E-value=27 Score=33.85 Aligned_cols=57 Identities=16% Similarity=0.036 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhhhhchhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHH
Q 001584 645 KAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAH 701 (1049)
Q Consensus 645 k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~ 701 (1049)
-..++..++.+...++....|++..++..+.++....+.+.|..+-.+++..+++++
T Consensus 17 w~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amG 73 (198)
T PF08161_consen 17 WPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMG 73 (198)
T ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCC
Confidence 456788889999999988889999999999988777667788888888888887754
No 312
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=80.26 E-value=18 Score=33.55 Aligned_cols=129 Identities=12% Similarity=0.051 Sum_probs=81.9
Q ss_pred cHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHh--HHHHHHHHHhhcC--C
Q 001584 314 APDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEK--LESVLHIVLGALR--D 389 (1049)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~--l~~i~~~l~~~l~--d 389 (1049)
+.|..+.-++..+-...++..-..+-.++...+...+......++.++..+..+.++....- -+.+++.+..... .
T Consensus 20 ~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~ 99 (157)
T PF11701_consen 20 EVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKS 99 (157)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CT
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhccc
Confidence 67887777777775555555555666666666665555567777888888887777654432 2456666666666 6
Q ss_pred CChhHHHHHHHHHHHhHhhhcHHHHhh-hhhHHHHHHHhcc-CCChH-HHHHHHHHHH
Q 001584 390 PEQFVRGAASFALGQFAEYLQPEIVSH-YESVLPCILNALE-DESDE-VKEKSYYALA 444 (1049)
Q Consensus 390 ~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~ll~~l~~~l~-~~~~~-v~~~a~~~l~ 444 (1049)
++..+..+++.++..-|.. .....+ ....++.|-+..+ +++.. +|..|.-+|.
T Consensus 100 ~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 100 KDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp S-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 7888899999998876655 223332 2446666667774 44455 6766655543
No 313
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=79.61 E-value=3.8 Score=40.68 Aligned_cols=133 Identities=13% Similarity=0.181 Sum_probs=73.8
Q ss_pred HHHhHHHHHHHHhCCChHHHHH-----HHHHHHHHhhccCCCcccchhhhHhHHHHHhhcCCchhhcH--hhhHHHHHHh
Q 001584 802 AVSDLLPAFAKSMGPHFAPIFA-----KLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYV--DRVMPLVLKE 874 (1049)
Q Consensus 802 ~~~~~l~~l~~~~~~~~~~~~~-----~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~ 874 (1049)
.+..++..++. +++.=.+++. .++|.+-...+.....-.|..+++++|.+++.-..++..|+ .+++|..++.
T Consensus 69 naLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~ 147 (262)
T PF04078_consen 69 NALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRI 147 (262)
T ss_dssp HHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHH
Confidence 34445555554 3443334443 25555533333322234688999999999997666666664 6899999999
Q ss_pred cCCCChHhHHHHHHHHHHHHhhcC---------cchhhHHHHHHHhhhhhhCCCCCChhHHhhHHHHHHHHH
Q 001584 875 LASPDAMNRRNAAFCVGELCKNGG---------ESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMI 937 (1049)
Q Consensus 875 l~~~~~~vr~~a~~~lg~l~~~~~---------~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~a~~~l~~i~ 937 (1049)
+...+.-.|-.|.+-+..+..... +.|. .+..++..+...+. ++....+-.+.+.|.-|+.
T Consensus 148 me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~-av~~vL~~mV~~l~-~~pS~RLLKhIIrCYlRLs 217 (262)
T PF04078_consen 148 MEFGSELSKTVATFILQKILLDDVGLNYICQTAERFF-AVAMVLNKMVEQLV-KQPSPRLLKHIIRCYLRLS 217 (262)
T ss_dssp HHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHH-HHHHHHHHHHHHHH-HS--HHHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHH-HHHHHHHHHHHHHc-cCCChhHHHHHHHHHHHHc
Confidence 988877788889998888765321 1121 12222322222111 2345666677777777664
No 314
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=79.33 E-value=68 Score=31.64 Aligned_cols=182 Identities=15% Similarity=0.159 Sum_probs=104.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH-HhcCCCc----------HHHHHHHHhc----------CCChhHHHHHHHHHHHh
Q 001584 5 LELLLIQFLMPDNDARRQAEDQIKR-LAKDPQV----------VPALVQHLRT----------AKTPNVRQLAAVLLRKK 63 (1049)
Q Consensus 5 l~~ll~~~~s~d~~~r~~a~~~L~~-~~~~p~~----------~~~l~~il~~----------~~~~~~R~~a~~~l~~~ 63 (1049)
+.++...+. ++..|..|-.+|-. .+.-|+. ...+++-+.+ ++....|..-+..|-+.
T Consensus 28 ~~~~i~~l~--~~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQc 105 (293)
T KOG3036|consen 28 AYQLILSLV--SPPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQC 105 (293)
T ss_pred hhhHHHHhh--CCchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHH
Confidence 334444444 34578888888843 4444443 2334433322 12356788888888888
Q ss_pred hhhhccCCCHHHHHHHHHHHHHHHh----hcCCHHHHHHHHHHHHHHHhccCCC----CCCcchHHHHHHhccCCCHHHH
Q 001584 64 ITGHWAKLSPQLKQLVKQSLIESIT----LEHSAPVRRASANVVSIIAKYAVPA----GEWPDLLPFLFQFSQSEQEEHR 135 (1049)
Q Consensus 64 i~~~w~~~~~~~~~~i~~~ll~~l~----~e~~~~vr~~~~~~l~~i~~~~~~~----~~w~~ll~~l~~~l~~~~~~~~ 135 (1049)
+..|-+.-..-.+..+--.+...|. +-+....|-++-.+|+.+++.+..+ -.|.+++|..+..+..++...+
T Consensus 106 vASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSK 185 (293)
T KOG3036|consen 106 VASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSK 185 (293)
T ss_pred HhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHH
Confidence 7766432111112222222333332 2355778999999999998854221 2478899999999999888888
Q ss_pred HHHHHHHHHhhhhh-h-----hccc--ccHHHHH-HHHHHhhCCCCChHHHHHHHHHHHHhhc
Q 001584 136 EVALILFSSLTETI-G-----QTFR--PHFADMQ-ALLLKCLQDETSNRVRIAALKAIGSFLE 189 (1049)
Q Consensus 136 ~~al~~l~~l~~~~-~-----~~~~--~~~~~l~-~~l~~~l~~~~~~~vr~~a~~~l~~~~~ 189 (1049)
..|..+++.|.-+. | ..+. .++..++ .++....+. ++..+-+.+++|..++..
T Consensus 186 tvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~-ps~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 186 TVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSM-PSPRLLKHVIRCYLRLSD 247 (293)
T ss_pred HHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhcC
Confidence 88888888876432 1 1111 1122222 333444444 667666677776655443
No 315
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=78.59 E-value=28 Score=45.05 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=88.1
Q ss_pred hHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 001584 369 AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCE 448 (1049)
Q Consensus 369 ~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~ 448 (1049)
...+..+++.++...-.++..+++.|+.-+......+...+.... -++++..|+..+.+.+..-...|+..|..++.
T Consensus 426 ~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~---qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~ 502 (1426)
T PF14631_consen 426 SEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYC---QQEVVGALVTHIGSGNSQEVDAALDVLCELAE 502 (1426)
T ss_dssp HHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHH---HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchh---HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 344556778888888888999999999999988888887774211 24577777776654444334688999999998
Q ss_pred hhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhccC
Q 001584 449 DMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTN 514 (1049)
Q Consensus 449 ~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~ 514 (1049)
..++.+.||.. ++..++..++.-+..--..++..++.++-.....-...-+.+.-.+++-+...+
T Consensus 503 ~~~~~l~~fa~-~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~ 567 (1426)
T PF14631_consen 503 KNPSELQPFAT-FLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSN 567 (1426)
T ss_dssp H-HHHHHHTHH-HHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SS
T ss_pred ccHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCc
Confidence 87777777644 344444555554433334557777777654432222333556666777666554
No 316
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=78.59 E-value=65 Score=31.83 Aligned_cols=153 Identities=20% Similarity=0.209 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHhhcCCHHHH
Q 001584 17 NDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVR 96 (1049)
Q Consensus 17 ~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~~~~vr 96 (1049)
+..|+-|.....+.... +-...++.-+-.+...+.|.+|+.++.... ..++.+..+ .+-..+..-.++.+.
T Consensus 33 p~lr~lak~~~~~~~~~-~~~~~l~~~L~~~~~~E~~~la~~il~~~~----~~~~~~~~~----~~~~~~~~~~~W~~~ 103 (213)
T PF08713_consen 33 PDLRKLAKDIYKELKLS-EELYELADELWESGYREERYLALLILDKRR----KKLTEEDLE----LLEKWLPDIDNWATC 103 (213)
T ss_dssp HHHHHHHHHHHHHHCTS-HHHHHHHHHHHCSSCHHHHHHHHHHHHHCG----GG--HHHHH----HHHHCCCCCCCHHHH
T ss_pred HHHHHHHHHHHhhcccc-hHHHHHHHHHcCCchHHHHHHHHHHhHHHh----hhhhHHHHH----HHHHHhccCCcchhh
Confidence 33444444444554444 222223333333556788888888876643 112222122 222222333567666
Q ss_pred HHH-HHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChH
Q 001584 97 RAS-ANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNR 175 (1049)
Q Consensus 97 ~~~-~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 175 (1049)
..+ ..+++.+.... +.+.+.+.+++.|++.-.|..|+.++...... ...+.++..+...+.+ ++..
T Consensus 104 D~~~~~~~~~~~~~~------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d-~~~~ 170 (213)
T PF08713_consen 104 DSLCSKLLGPLLKKH------PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKD-EEYY 170 (213)
T ss_dssp HHHTHHHHHHHHHHH------GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTG-S-HH
T ss_pred hHHHHHHHHHHHHhh------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCC-chHH
Confidence 665 44455554321 67889999999999988888886555333222 5667888888888888 8999
Q ss_pred HHHHHHHHHHHhhccc
Q 001584 176 VRIAALKAIGSFLEFT 191 (1049)
Q Consensus 176 vr~~a~~~l~~~~~~~ 191 (1049)
||.+...+|..+....
T Consensus 171 vq~ai~w~L~~~~~~~ 186 (213)
T PF08713_consen 171 VQKAIGWALREIGKKD 186 (213)
T ss_dssp HHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999988877654
No 317
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.30 E-value=76 Score=40.48 Aligned_cols=252 Identities=16% Similarity=0.226 Sum_probs=122.2
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccC
Q 001584 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (1049)
Q Consensus 158 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~ 237 (1049)
...+..+......+.+.+||...++|...-+.. =+..++.++...-.+.+......+++....+....
T Consensus 1035 ~~fl~Pfe~im~~s~s~~Irelv~rC~~~nikS------------GWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~ 1102 (1514)
T KOG0929|consen 1035 KDFLRPFEHIMKRSSSAEIRELVVRCISSNIKS------------GWKNIFKIFTTAASDSSKNIVELAFETVSKILQEL 1102 (1514)
T ss_pred HhhcCcchHHhhccCcchhHHHHHhhhhhhhhh------------hhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHh
Confidence 334444444444447888999999998722222 23344454444444455556666666655433322
Q ss_pred -Ccchh---hhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhh-----hh------hc---CChHHHHHHHhh
Q 001584 238 -APLLG---DSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS-----LK------KH---KLVIPILQVMCP 299 (1049)
Q Consensus 238 -~~~~~---~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~-----~~------~~---~~~~~il~~l~~ 299 (1049)
...+. ..+.+.+..+.....+.. .......++.++..++...... .+ .. .+.-+++-.+-.
T Consensus 1103 f~~~~~~~~~sf~d~v~cl~~F~~~~~-~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~ 1181 (1514)
T KOG0929|consen 1103 FENVFPQEMDSFKDCVKCLEEFTKNLG-FPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSK 1181 (1514)
T ss_pred hhhhchhhhHHHHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhH
Confidence 12222 223333333333333221 1223334444444333211100 01 00 011122222222
Q ss_pred hhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc----hhchHHHHHHHHhhhc----------CCChhHHhHHHHHHHHHh
Q 001584 300 LLAESNEAGEDDDLAPDRAAAEVIDTMALNLA----KHVFPPVFEFASVSCQ----------NASPKYREAAVTAIGIIS 365 (1049)
Q Consensus 300 ~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~----~~~~~~ll~~l~~~l~----------~~~~~~r~~al~~l~~i~ 365 (1049)
...... ..+|..+.+.+-.+-...| +..|..++..+..-+. ..+|. ......++..++
T Consensus 1182 i~~~~~-------~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~-~tT~~~Al~~~v 1253 (1514)
T KOG0929|consen 1182 IINDYR-------LEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWL-STTCNHALQALV 1253 (1514)
T ss_pred HhhccH-------HHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHH-HHHHHHHHHHHH
Confidence 222111 1467777777766666666 3445444443322221 12342 233444444444
Q ss_pred h---cChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHh-hhhhHHHHHHHhccC
Q 001584 366 E---GCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS-HYESVLPCILNALED 430 (1049)
Q Consensus 366 ~---~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~ll~~l~~~l~~ 430 (1049)
+ ...+.+...++.++..+..+.+.++..+-.....|+.++....+..+.+ .++++...+.+....
T Consensus 1254 ~lf~~~~~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~~~ 1322 (1514)
T KOG0929|consen 1254 DLFTQFFKQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAFKT 1322 (1514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHHHh
Confidence 3 3344444456777777778888888888888888888888777655543 345555555544443
No 318
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=78.18 E-value=7.5 Score=32.87 Aligned_cols=61 Identities=18% Similarity=0.160 Sum_probs=52.9
Q ss_pred HHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccc-cccchHHHHHHHHHhhcCC
Q 001584 412 EIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE-ILPFLDPLMGKLLAALENS 472 (1049)
Q Consensus 412 ~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~-l~~~~~~ll~~l~~~l~~~ 472 (1049)
.+.++++.++..+..++..-.+.||.-+...|.-+++.+++. +..+...+++.+..++...
T Consensus 4 ~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 4 LLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 456788888999999999999999999999999999999887 6678888999888887654
No 319
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=78.00 E-value=75 Score=31.38 Aligned_cols=83 Identities=13% Similarity=0.153 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhccC---CcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhh
Q 001584 223 AVIAFEIFDELIESP---APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCP 299 (1049)
Q Consensus 223 ~~~~~~~l~~l~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~ 299 (1049)
...++..|..++.+. ..|+..+++..+..++.........+-.|..++-+++.+++.....+.+.-.-..+++.++.
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 344555555555443 45677777766554444433333467899999999999998765444331112346777776
Q ss_pred hhccCC
Q 001584 300 LLAESN 305 (1049)
Q Consensus 300 ~l~~~~ 305 (1049)
.|....
T Consensus 176 ime~GS 181 (293)
T KOG3036|consen 176 IMESGS 181 (293)
T ss_pred HHhccc
Confidence 665544
No 320
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=77.84 E-value=1.4e+02 Score=34.37 Aligned_cols=116 Identities=14% Similarity=0.196 Sum_probs=80.6
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHhhcccC-ChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcc
Q 001584 162 ALLLKCLQDETSNRVRIAALKAIGSFLEFTN-DGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (1049)
Q Consensus 162 ~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (1049)
..+...|.+ .+...|...++++++++.... ++.-...+..-+..++..+..-+.+.++-.|..++..+..+......+
T Consensus 302 ~~~~~LLds-es~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 302 EHFDELLDS-ESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHhcc-cchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 456666766 888899999999998875543 332344444556667777777788888999999999999998877665
Q ss_pred hhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhH
Q 001584 241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY 281 (1049)
Q Consensus 241 ~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~ 281 (1049)
.+. -..+.......+.+. +.-+|+.|+.+++.+.-..|
T Consensus 381 ~~~-r~ev~~lv~r~lqDr--ss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 381 VGR-RHEVIRLVGRRLQDR--SSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred cch-HHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHhcCC
Confidence 433 223444444444443 67899999999888765444
No 321
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=76.74 E-value=34 Score=32.24 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=65.6
Q ss_pred hHHhHHHHHHHHHhhcChHHHH----------HhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHH
Q 001584 352 KYREAAVTAIGIISEGCAEWMK----------EKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVL 421 (1049)
Q Consensus 352 ~~r~~al~~l~~i~~~~~~~~~----------~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll 421 (1049)
..|.-++..+..+.+..+..+. ..-+.+.+.+++.+..+++.+-..++..+..+...+...++..++.++
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l 116 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFL 116 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554443333 112466777777777677888888999999988888777777777788
Q ss_pred HHHHH-hccCCC--hHHHHHHHHHHHHHHHh
Q 001584 422 PCILN-ALEDES--DEVKEKSYYALAAFCED 449 (1049)
Q Consensus 422 ~~l~~-~l~~~~--~~v~~~a~~~l~~l~~~ 449 (1049)
+.++. .+..++ ..-|..++.++..+++.
T Consensus 117 ~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 117 SHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 88776 444333 35667788888888754
No 322
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=76.70 E-value=15 Score=31.97 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=55.6
Q ss_pred hHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhcc--------ChhhhhhHHHHHHHHH
Q 001584 458 LDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLT--------NDEDLRSRARATELLG 529 (1049)
Q Consensus 458 ~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~--------~~~~~~~r~~a~~~l~ 529 (1049)
+..+++.|..-|++..+.|+..++.+|-.++...+..|...+..-...++.+..-. ++....+|..|-+++.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 56788889999999999999999999999999888888877766555555544321 2223346777777777
Q ss_pred HHH
Q 001584 530 LVA 532 (1049)
Q Consensus 530 ~l~ 532 (1049)
.+-
T Consensus 116 ~if 118 (122)
T cd03572 116 AIF 118 (122)
T ss_pred HHh
Confidence 653
No 323
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=76.23 E-value=70 Score=31.92 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=91.4
Q ss_pred HHHHHHHHHhhcCcchhhH-HHHHHHhhhhhhCC------CCCChhHHhhHHHHHHHHHHhCCCCC----C-hhhHHHHH
Q 001584 886 AAFCVGELCKNGGESALKY-YGDILRGLYPLFGD------SEPDDAVRDNAAGAVARMIMVNPQSI----P-LNQVLPVL 953 (1049)
Q Consensus 886 a~~~lg~l~~~~~~~~~~~-~~~~l~~L~~~l~~------~~~~~~~~~~a~~~l~~i~~~~~~~~----~-~~~~l~~~ 953 (1049)
++.++-.+....+-.+.+| ++.++..+..+... .+....+....+..+..|+..|...+ | +-.++..+
T Consensus 8 ~l~~l~~ll~~~~~~~sq~~ie~~l~~~~~~~~~~~~~~~~~~~~~if~~~~~ll~~il~~hr~~l~~r~hll~~~l~~L 87 (223)
T PF10441_consen 8 ILEILKQLLSSKPWLFSQYNIEQILSILSTLFSSLRNTLSADSSPSIFISLCRLLSSILRHHRFKLSGRFHLLLSVLQRL 87 (223)
T ss_pred HHHHHHHHHhcCchhccchhHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHhHHHHcCCChHHHHHHHHH
Confidence 3444545555544445444 45555555554432 23345677777888888888776543 3 23333333
Q ss_pred HhhCC------CCC---cHHh---hHHHHHHHHHHHhhC-------------------ChhhcchhhHHHHHHHHHhcCC
Q 001584 954 LKVLP------LKE---DFEE---SMAVYNCISTLVLSS-------------------NPQILSLVPELVNLFAEVVVSP 1002 (1049)
Q Consensus 954 l~~lp------~~~---d~~e---~~~~~~~l~~l~~~~-------------------~~~~~~~~~~i~~~~~~~~~~~ 1002 (1049)
+..+- ... ...+ +...-+.+..+.+.. ...+..|++.++.-........
T Consensus 88 L~~l~~~~~~~~~~~~~~s~~~~~a~~~aRlL~~l~ep~~~~~~~~~~~~l~~~~~~~k~~~~kh~~~lL~~Yi~~~~~~ 167 (223)
T PF10441_consen 88 LRCLFSPNSQRSSKQLGLSAEAEEAKAFARLLTNLCEPSSVSRSSKKTSSLTSATSSAKKSLRKHAPYLLANYISLQLKY 167 (223)
T ss_pred HHHHHhcCccccccccccchhhHHHHHHHHHHHHHhCcccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 33332 000 1111 232333333333220 0123356777766666665555
Q ss_pred CCChHHHHHHHHHHHHHHHHhh-hhHHHHHhcCCHHHHHHHHhhc
Q 001584 1003 EESSEVKSQVGMAFSHLISLYG-QQMQPLLSNLSPAHATALAAFA 1046 (1049)
Q Consensus 1003 ~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~l~~~~~~~l~~~~ 1046 (1049)
....+++..+..-+-.+....+ ...+.+...|+...|..++++.
T Consensus 168 ~l~~~vr~~L~pGiy~l~d~~s~~e~~~l~a~Ld~~gr~~fk~Ly 212 (223)
T PF10441_consen 168 TLPPEVREALMPGIYALFDVCSQHELQQLNASLDASGRAVFKSLY 212 (223)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcChHHHHHHHHHH
Confidence 6778899988888888877665 4578888999999999998874
No 324
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=76.19 E-value=3.8 Score=27.78 Aligned_cols=41 Identities=29% Similarity=0.372 Sum_probs=29.0
Q ss_pred HHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 001584 141 LFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAI 184 (1049)
Q Consensus 141 ~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l 184 (1049)
+++.+++..+..+. .+.+...+...+.| +++.||.+|+.++
T Consensus 2 ~l~~iv~~dp~ll~--~~~v~~~i~~rl~D-~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLD--SSDVQSAIIRRLSD-SSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccc--hHHHHHHHHHHhcC-CChHHHHHHHHHC
Confidence 34555554443332 34788899999999 9999999998763
No 325
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=76.02 E-value=20 Score=33.10 Aligned_cols=106 Identities=15% Similarity=0.306 Sum_probs=59.8
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHh----hhhhHHHHHHHhccCCChHHHHHHHHHHHHHH-Hhhcc
Q 001584 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS----HYESVLPCILNALEDESDEVKEKSYYALAAFC-EDMGE 452 (1049)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~----~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~-~~~~~ 452 (1049)
.|=|.++.+|.... +..+..+.|+++......++-. -..++...++..- .+.+ .+|...+..+. ...++
T Consensus 3 eikplLIsCL~~q~--~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~~e 76 (174)
T PF04510_consen 3 EIKPLLISCLTMQE--TKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLYGE 76 (174)
T ss_pred chHHHHHHHHHhhc--ccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhhhh
Confidence 34466777776432 3345566666666555443321 2233443333322 2222 45566665555 33456
Q ss_pred ccccchHHHHHHHHHhhcCCC-HhHHHHHHHHHHHHHH
Q 001584 453 EILPFLDPLMGKLLAALENSP-RNLQETCMSAIGSVAA 489 (1049)
Q Consensus 453 ~l~~~~~~ll~~l~~~l~~~~-~~v~~~~~~~l~~l~~ 489 (1049)
.+.|+++.+++.+.+.+.++. ..+....+..-+.++.
T Consensus 77 fl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~ 114 (174)
T PF04510_consen 77 FLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCM 114 (174)
T ss_pred HHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHH
Confidence 678999999999999988764 4555555655555543
No 326
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=75.25 E-value=52 Score=39.04 Aligned_cols=93 Identities=23% Similarity=0.225 Sum_probs=68.8
Q ss_pred CcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccH-HHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCCh
Q 001584 116 WPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF-ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDG 194 (1049)
Q Consensus 116 w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~ 194 (1049)
-..++..+-..+.. +..|..++.+|+.++..-+..+.... ..+++-+.++|..+.+..+-..|+.+|..++..++..
T Consensus 68 ~K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~ 145 (668)
T PF04388_consen 68 DKHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSS 145 (668)
T ss_pred HHHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccch
Confidence 35677888887764 46788999999999987664432222 2456677777775588889999999999999988643
Q ss_pred hhHHHHHhhhHHHHHHHHHHh
Q 001584 195 AEVVKFREFIPSILNVSRQCL 215 (1049)
Q Consensus 195 ~~~~~~~~~~~~ll~~l~~~l 215 (1049)
+..++|.++.+..+++
T Consensus 146 -----l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 146 -----LGPHLPDLFNIFGRLL 161 (668)
T ss_pred -----hhHHHHHHHHHHHHHH
Confidence 5678888888877665
No 327
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=74.98 E-value=6.8 Score=42.67 Aligned_cols=133 Identities=11% Similarity=0.147 Sum_probs=93.1
Q ss_pred HhHHHHHHHHHhhcC---hHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHHHHhcc
Q 001584 354 REAAVTAIGIISEGC---AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALE 429 (1049)
Q Consensus 354 r~~al~~l~~i~~~~---~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l~ 429 (1049)
-.|++.+|..++... ...+.. ..+.+.++..|++|+.+|...+...+..+...+.+--...+ ..++..+.+.+.
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d--~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~ 483 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLD--YPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM 483 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccc--cchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh
Confidence 345566666655432 122222 26788999999999998888887777776655543212222 457777777777
Q ss_pred CCChHHHHHHHHHHHHHHHhhcc--ccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHH
Q 001584 430 DESDEVKEKSYYALAAFCEDMGE--EILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVA 488 (1049)
Q Consensus 430 ~~~~~v~~~a~~~l~~l~~~~~~--~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~ 488 (1049)
..+...|....|.+..+.-++.+ .+.+...-=+..++...+++...++.++++.+..+.
T Consensus 484 sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNft 544 (743)
T COG5369 484 SKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFT 544 (743)
T ss_pred cchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcc
Confidence 77778999999999998877743 344545555778888889999999999999988764
No 328
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=74.19 E-value=1.6e+02 Score=33.33 Aligned_cols=160 Identities=10% Similarity=0.000 Sum_probs=82.8
Q ss_pred CCcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHH
Q 001584 237 PAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPD 316 (1049)
Q Consensus 237 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~ 316 (1049)
.+..+...+.++...++ +-.-.+.++.+|..++..+..++...|..+.+-.++. ..--.|.+.. ..+|
T Consensus 264 n~sl~~d~i~dicdsvf-vsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lr----y~GW~LSDn~-------~~vR 331 (740)
T COG5537 264 NPSLIRDEIKDICDSVF-VSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLR----YNGWSLSDNH-------EGVR 331 (740)
T ss_pred cchHHHHHHHHHHHHHH-hhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhccc----ccccccccch-------HHHH
Confidence 34445666666655433 1222456889999998888877777676655432211 1111122222 2677
Q ss_pred HHHHHHHHHHHHHcc-h----hchHHHHHHHHhhhc-CCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCC
Q 001584 317 RAAAEVIDTMALNLA-K----HVFPPVFEFASVSCQ-NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDP 390 (1049)
Q Consensus 317 ~~a~~~l~~l~~~~~-~----~~~~~ll~~l~~~l~-~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~ 390 (1049)
......+..+....+ . .++.-+...|.+.+. +.+- +|-+++..+..+..-.. +. +.-+..+..++-|.
T Consensus 332 l~v~Kil~~L~s~~p~~d~ir~f~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~lg~--L~---~SeIlIvsscmlDi 405 (740)
T COG5537 332 LLVSKILLFLCSRIPHTDAIRRFVERFKDRILEFLRTDSDC-VRICSIKSLCYLRILGV--LS---SSEILIVSSCMLDI 405 (740)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHhcc--cc---hhHHHHHHHHHhcC
Confidence 777777777777666 2 233444444544443 3344 77777666655543100 00 01122334445555
Q ss_pred ChhHHHHHHHHHHHhHhhhcHHHH
Q 001584 391 EQFVRGAASFALGQFAEYLQPEIV 414 (1049)
Q Consensus 391 ~~~vr~~a~~~l~~l~~~~~~~~~ 414 (1049)
.|.-|......+..+|+.....+.
T Consensus 406 ~pd~r~~~~E~v~~icK~~aevik 429 (740)
T COG5537 406 IPDSRENIVESVESICKIDAEVIK 429 (740)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHH
Confidence 555455555555555555444343
No 329
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=73.84 E-value=4.9 Score=26.77 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=24.3
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhH
Q 001584 379 VLHIVLGALRDPEQFVRGAASFALGQFA 406 (1049)
Q Consensus 379 i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 406 (1049)
.++.+++.+.++++.++..++++|+.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5777888888889999999999999875
No 330
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=73.55 E-value=83 Score=32.16 Aligned_cols=77 Identities=21% Similarity=0.386 Sum_probs=52.3
Q ss_pred HHhHHHHHHHHhCCChHHHHHHHHHHHHHhhccCCC-------cccchhhhHhHHHHHhh--cCCchhhcHhhhHHHHHH
Q 001584 803 VSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRP-------LQDRTMVVATLAEVARD--MGSPIAAYVDRVMPLVLK 873 (1049)
Q Consensus 803 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~-------~~~r~~a~~~l~~l~~~--~~~~~~~~~~~i~~~l~~ 873 (1049)
..-++..+...-+..-.+.+...+..+++..+.+.. ..-+..|+-+|..+++. ++..+.+|+.+.+...++
T Consensus 168 LP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~ 247 (255)
T PF10350_consen 168 LPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIK 247 (255)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 334455555554443336777777777777655432 13467889999998876 345577899999988888
Q ss_pred hcCCCC
Q 001584 874 ELASPD 879 (1049)
Q Consensus 874 ~l~~~~ 879 (1049)
++.+++
T Consensus 248 ~f~s~~ 253 (255)
T PF10350_consen 248 GFSSPD 253 (255)
T ss_pred hCCCcc
Confidence 887654
No 331
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=73.40 E-value=60 Score=32.63 Aligned_cols=180 Identities=16% Similarity=0.185 Sum_probs=96.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHH-hcCCC----------cHHHHHHHHhc-----CC-----ChhHHHHHHHHHHHhhhh
Q 001584 8 LLIQFLMPDNDARRQAEDQIKRL-AKDPQ----------VVPALVQHLRT-----AK-----TPNVRQLAAVLLRKKITG 66 (1049)
Q Consensus 8 ll~~~~s~d~~~r~~a~~~L~~~-~~~p~----------~~~~l~~il~~-----~~-----~~~~R~~a~~~l~~~i~~ 66 (1049)
++..+. +++.|..|-.+|..- .+-|+ .+..|++-+.+ ++ ....|-..+..|-+.+..
T Consensus 2 ~i~~L~--~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs 79 (262)
T PF04078_consen 2 LILDLC--NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS 79 (262)
T ss_dssp HHHHTS--SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhc--CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 445555 667899998888543 33333 34445544432 11 235677777777777766
Q ss_pred hccCCCHHHHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHhccCCC----CCCcchHHHHHHhccCCCHHHHHHH
Q 001584 67 HWAKLSPQLKQLVKQSLIESITL----EHSAPVRRASANVVSIIAKYAVPA----GEWPDLLPFLFQFSQSEQEEHREVA 138 (1049)
Q Consensus 67 ~w~~~~~~~~~~i~~~ll~~l~~----e~~~~vr~~~~~~l~~i~~~~~~~----~~w~~ll~~l~~~l~~~~~~~~~~a 138 (1049)
|-+.=..-.+..+--.|...|.. .+-..+|-+.-.+|+.+++.+.++ -...+++|..+..+..++.-.+..|
T Consensus 80 hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvA 159 (262)
T PF04078_consen 80 HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVA 159 (262)
T ss_dssp -TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHH
T ss_pred ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHH
Confidence 53221111111111122233332 123568888999999998854321 0236788999998888887777888
Q ss_pred HHHHHHhhhhhh---------hcccccHHHHH-HHHHHhhCCCCChHHHHHHHHHHHHhhccc
Q 001584 139 LILFSSLTETIG---------QTFRPHFADMQ-ALLLKCLQDETSNRVRIAALKAIGSFLEFT 191 (1049)
Q Consensus 139 l~~l~~l~~~~~---------~~~~~~~~~l~-~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~ 191 (1049)
..++..+..+-. +.|. .+..++ .++.....+ +++.+-+..++|..++.+..
T Consensus 160 tfIlqKIL~dd~GL~yiC~t~eRf~-av~~vL~~mV~~l~~~-pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 160 TFILQKILLDDVGLNYICQTAERFF-AVAMVLNKMVEQLVKQ-PSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHHHHHHHSHHHHHHHTSSHHHHH-HHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHcchhHHHHHhcCHHHHH-HHHHHHHHHHHHHccC-CChhHHHHHHHHHHHHccCH
Confidence 888888764422 1111 122222 333333344 67767677777766665543
No 332
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.34 E-value=28 Score=35.46 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=68.7
Q ss_pred HHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHh-hhhhH
Q 001584 342 ASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS-HYESV 420 (1049)
Q Consensus 342 l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~l 420 (1049)
+.+++.+.++.+|.+|+.-+..+.......+..+-...++.+.+.+.++.+ -.-|..++.+++.... ..+ .++.+
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~--l~~~ll~~~ 83 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE--LRKKLLQDL 83 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH--HHHHHHHHH
Confidence 445678889999999997765555444444555566788889999998777 3455677888877632 222 33445
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHH
Q 001584 421 LPCILNALEDESDEVKEKSYYALAAFCE 448 (1049)
Q Consensus 421 l~~l~~~l~~~~~~v~~~a~~~l~~l~~ 448 (1049)
+..++..+.++........|..+.++.+
T Consensus 84 ~k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 84 LKVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 5666666777755566667777776654
No 333
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=73.05 E-value=2.3e+02 Score=34.59 Aligned_cols=135 Identities=16% Similarity=0.194 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhhcccCChhhH----HHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHH
Q 001584 177 RIAALKAIGSFLEFTNDGAEV----VKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFS 252 (1049)
Q Consensus 177 r~~a~~~l~~~~~~~~~~~~~----~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l 252 (1049)
-..++.+|.+++.+.++-... ...-..++.+...+. ..+++.+...+++++..+..+.+..-.-.-...+..+
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr---~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLR---CRKHPKLQILALQVILLATANKECVTDLATCNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHH---HcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHH
Confidence 356778888888776532110 011233344444322 2356667777877777665443322211122344444
Q ss_pred HHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhh---hcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHH
Q 001584 253 LEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLK---KHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMAL 328 (1049)
Q Consensus 253 ~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~---~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~ 328 (1049)
+..+.+ -+..|..+++.+..+.+. +...+ +++- +..+..+++.... ...|..+++.++.+..
T Consensus 1819 L~lLHS---~PS~R~~vL~vLYAL~S~-~~i~keA~~hg~----l~yil~~~c~~~~------~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1819 LTLLHS---QPSMRARVLDVLYALSSN-GQIGKEALEHGG----LMYILSILCLTNS------DQQRAQAAELLAKLQA 1883 (2235)
T ss_pred HHHHhc---ChHHHHHHHHHHHHHhcC-cHHHHHHHhcCc----hhhhhHHHhccCc------HHHHHHHHHHHHHhhh
Confidence 555543 477899999999888754 22221 1221 2223344443332 1456667777766553
No 334
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=73.01 E-value=1.9e+02 Score=33.76 Aligned_cols=109 Identities=15% Similarity=0.178 Sum_probs=71.9
Q ss_pred ccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 001584 155 PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELI 234 (1049)
Q Consensus 155 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~ 234 (1049)
..+..+++.+.....+ +=+.|+..++..+..++...+.. -..++-.+++- +.+.+..++..|.-.|..+.
T Consensus 300 ~ly~rfievLe~lS~D-~L~~vk~raL~ti~~lL~~kPEq-----E~~LL~~lVNK----lGDpqnKiaskAsylL~~L~ 369 (988)
T KOG2038|consen 300 ILYFRFIEVLEELSKD-PLEEVKKRALKTIYDLLTNKPEQ-----ENNLLVLLVNK----LGDPQNKIASKASYLLEGLL 369 (988)
T ss_pred HHHHHHHHHHHHHccc-cHHHHHHHHHHHHHHHHhCCcHH-----HHHHHHHHHHh----cCCcchhhhhhHHHHHHHHH
Confidence 3345566666666666 88899999999999988876532 23444455554 45555567777777788887
Q ss_pred ccCCcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHH
Q 001584 235 ESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLA 277 (1049)
Q Consensus 235 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~ 277 (1049)
..+|..=.-.+..+-.+++ .+..+......|+.+|+.+.
T Consensus 370 ~~HPnMK~Vvi~EIer~~F----Rpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 370 AKHPNMKIVVIDEIERLAF----RPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred hhCCcceeehHHHHHHHHc----ccCccccceeehhhhhhhhH
Confidence 7777654444455555443 24456666777888888765
No 335
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=72.89 E-value=63 Score=28.05 Aligned_cols=71 Identities=14% Similarity=0.101 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhh--hHHHHHHHh----c--cCCChHHHHHHHHHHHHH
Q 001584 376 LESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE--SVLPCILNA----L--EDESDEVKEKSYYALAAF 446 (1049)
Q Consensus 376 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~ll~~l~~~----l--~~~~~~v~~~a~~~l~~l 446 (1049)
...++..+...+.++++++...|+..|..+...+++.+..++. ..+..+++. . .+....||..+...+...
T Consensus 35 ~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 35 PKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 4578889999999999999999999999999999887765431 223333321 1 133567888887776654
No 336
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=72.54 E-value=49 Score=34.83 Aligned_cols=100 Identities=12% Similarity=0.070 Sum_probs=67.8
Q ss_pred hhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHH
Q 001584 345 SCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLP 422 (1049)
Q Consensus 345 ~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~ 422 (1049)
...+++|......|.-++.-.++ -.+.+..|.+.+++.++.|...|+..++.+...|+..+..-+ .++..
T Consensus 20 ~nT~enW~~IlDvCD~v~~~~~~--------~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~ 91 (462)
T KOG2199|consen 20 KNTSENWSLILDVCDKVGSDPDG--------GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTT 91 (462)
T ss_pred ccccccHHHHHHHHHhhcCCCcc--------cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHH
Confidence 34567888877776655544332 235677888999999999999999999999999987654321 22333
Q ss_pred HHHHhcc-CCChHHHHHHHHHHHHHHHhhcc
Q 001584 423 CILNALE-DESDEVKEKSYYALAAFCEDMGE 452 (1049)
Q Consensus 423 ~l~~~l~-~~~~~v~~~a~~~l~~l~~~~~~ 452 (1049)
.+...+. ...++|+...-..+....+.+.+
T Consensus 92 el~al~~~~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 92 ELRALIESKAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhcc
Confidence 3333344 34577888777777777776643
No 337
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=72.47 E-value=1.4e+02 Score=31.95 Aligned_cols=154 Identities=11% Similarity=0.129 Sum_probs=98.4
Q ss_pred HHHHHHHhhhcCCChhHHhHHHHHHHHHhh-cChHHHH---HhHH---HHHHHHHhhcC-CCC---------hhHHHHHH
Q 001584 337 PVFEFASVSCQNASPKYREAAVTAIGIISE-GCAEWMK---EKLE---SVLHIVLGALR-DPE---------QFVRGAAS 399 (1049)
Q Consensus 337 ~ll~~l~~~l~~~~~~~r~~al~~l~~i~~-~~~~~~~---~~l~---~i~~~l~~~l~-d~~---------~~vr~~a~ 399 (1049)
.-+..+...+++.......+++..+..++. ..+.... ...+ ..++.++..=. +.. +.+|...+
T Consensus 56 ~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI 135 (330)
T PF11707_consen 56 NHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFI 135 (330)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHH
Confidence 336677777888777777799999999988 3322222 2211 22333331111 111 38999999
Q ss_pred HHHHHhHhhhcHHHHhhh---hhHHHHHHHhccCCChHHHHHHHHHHHHHH-Hhh--cc--ccccchHHHHHHHHHhhcC
Q 001584 400 FALGQFAEYLQPEIVSHY---ESVLPCILNALEDESDEVKEKSYYALAAFC-EDM--GE--EILPFLDPLMGKLLAALEN 471 (1049)
Q Consensus 400 ~~l~~l~~~~~~~~~~~~---~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~-~~~--~~--~l~~~~~~ll~~l~~~l~~ 471 (1049)
..+-.+.....+.....+ ..++..+++.+....+.+-...+.++..-+ ..- +. ...-+=+..+..+..+...
T Consensus 136 ~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 136 RFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence 999888888766554322 456899999999877777766666666432 221 11 1222445677888887776
Q ss_pred CCH----hHHHHHHHHHHHHHHH
Q 001584 472 SPR----NLQETCMSAIGSVAAA 490 (1049)
Q Consensus 472 ~~~----~v~~~~~~~l~~l~~~ 490 (1049)
... .++..+-+.+-.++..
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred cCCcccchHHHHHHHHHHHHhcC
Confidence 666 8899999998888864
No 338
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=71.78 E-value=74 Score=30.01 Aligned_cols=98 Identities=10% Similarity=0.101 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHhHhhhcHHHH---h-------hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHH
Q 001584 392 QFVRGAASFALGQFAEYLQPEIV---S-------HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPL 461 (1049)
Q Consensus 392 ~~vr~~a~~~l~~l~~~~~~~~~---~-------~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~l 461 (1049)
...|..+...+..+.+..++.+. + .-+.+.+.+++.+..+.+.+-..++..+..++..+...+..-++.+
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~ 115 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVF 115 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666665554443 1 1156788888888777788888899999999988877676666777
Q ss_pred HHHHHH-hhcCCC--HhHHHHHHHHHHHHHH
Q 001584 462 MGKLLA-ALENSP--RNLQETCMSAIGSVAA 489 (1049)
Q Consensus 462 l~~l~~-~l~~~~--~~v~~~~~~~l~~l~~ 489 (1049)
+..+.. .+.+.. ...|..+++++..++.
T Consensus 116 l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 116 LSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 776666 444433 3577888888888775
No 339
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=71.15 E-value=16 Score=35.67 Aligned_cols=72 Identities=18% Similarity=0.285 Sum_probs=52.1
Q ss_pred HHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhh
Q 001584 340 EFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH 416 (1049)
Q Consensus 340 ~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 416 (1049)
+.+.....+++.-.|.+++..+...... ..+.+.+++.+-..+.|++..||.+..|+|..++...++...++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~ 179 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAF 179 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 5666778888765665665554333322 24577888888899999999999999999999998865544443
No 340
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=70.71 E-value=2e+02 Score=33.05 Aligned_cols=78 Identities=15% Similarity=0.100 Sum_probs=52.5
Q ss_pred hhchHHHHHHHHhhhcC-CChhHHhHHHHHHHHHhhcC-hHHHH-HhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhh
Q 001584 332 KHVFPPVFEFASVSCQN-ASPKYREAAVTAIGIISEGC-AEWMK-EKLESVLHIVLGALRDPEQFVRGAASFALGQFAEY 408 (1049)
Q Consensus 332 ~~~~~~ll~~l~~~l~~-~~~~~r~~al~~l~~i~~~~-~~~~~-~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 408 (1049)
.+.+..++-.+...+.+ +....|-+.+..++.+++-. +.... +..+.+....-..|.|.|+-++.-|+.+.++|++.
T Consensus 474 ~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~ 553 (559)
T PF14868_consen 474 PQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAER 553 (559)
T ss_pred hHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc
Confidence 34444555555566633 34457888888888887642 22222 33555555666678899999999999999999886
Q ss_pred h
Q 001584 409 L 409 (1049)
Q Consensus 409 ~ 409 (1049)
.
T Consensus 554 T 554 (559)
T PF14868_consen 554 T 554 (559)
T ss_pred C
Confidence 4
No 341
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=70.66 E-value=1.3e+02 Score=30.77 Aligned_cols=73 Identities=15% Similarity=0.190 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhc
Q 001584 375 KLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG 451 (1049)
Q Consensus 375 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 451 (1049)
+--+++..+...+..+-+-+|..++..|..+.....-. +++-.+++..+++.++.+. ...|...|..++...+
T Consensus 185 ~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~~---~~eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 185 HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTDL---WMEALEVLDEIVTRSG 257 (262)
T ss_pred hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCcc---HHHHHHHHHHHHhhcc
Confidence 34567778888888888889999999998888776422 3355678888888887763 3456666666665544
No 342
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.59 E-value=3.1e+02 Score=34.75 Aligned_cols=241 Identities=15% Similarity=0.132 Sum_probs=123.4
Q ss_pred HhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcC---CCHhHHHHHHHHHHHHHHHhhhhccccH---
Q 001584 426 NALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN---SPRNLQETCMSAIGSVAAAAEQAFIPYA--- 499 (1049)
Q Consensus 426 ~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~---~~~~v~~~~~~~l~~l~~~~~~~~~~~~--- 499 (1049)
.....+.-+||.....++.++++..++.+..-.+.+++.+-..... ...++-..++.++..+.. +|.+-+
T Consensus 849 ~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIss----DfLqSLp~s 924 (1610)
T KOG1848|consen 849 SDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISS----DFLQSLPTS 924 (1610)
T ss_pred HHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhh----cchhcCChH
Confidence 3334455678888899999999988775542234444444444333 244555556655554432 333322
Q ss_pred --HHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhc------cc---------------cchHH-----HHHHH
Q 001584 500 --ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRAR------ME---------------PILPP-----FVEAA 551 (1049)
Q Consensus 500 --~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~------~~---------------~~~~~-----i~~~l 551 (1049)
..++..+..+-....|-...+ .|+..+..++..+.... .. ..+++ ++..+
T Consensus 925 ci~~lidtl~~fs~QktdlNISl--tAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L 1002 (1610)
T KOG1848|consen 925 CILDLIDTLLVFSRQKTDLNISL--TAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHL 1002 (1610)
T ss_pred HHHHHHHHHHHHHhhhccccccH--HHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHH
Confidence 223444444433332222222 34444444443332100 00 01111 22333
Q ss_pred HhccCCCCchhhHHHHHHHHHHHHHcccCccC--chhhhhHHHHhhccCCCCCccCCCCCchhhhccCCCCCCCcchhhc
Q 001584 552 ISGFGLEFSELREYTHGFFSNIAGVLEDGFAQ--YLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCE 629 (1049)
Q Consensus 552 ~~~l~~~~~~~r~~~~~~l~~l~~~~~~~~~~--~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (1049)
.+...++-.++|..|.+.+-++...-|..+.+ +-.-+...++..+...+... .+ +|+ +. ++ +
T Consensus 1003 ~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~--~~---ewn-----gk----ei--q 1066 (1610)
T KOG1848|consen 1003 ADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQN--VS---EWN-----GK----EI--Q 1066 (1610)
T ss_pred HHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccc--hh---hhc-----ch----hH--h
Confidence 44445566789999999999999999988887 44444444444443222211 00 110 00 00 0
Q ss_pred ccccceeeeccchhhHHHHHHHHHHHHHHhhhhchh-----hHHHHHHH----HHhhhcCCChHHHHHHHHHHHHHHHHH
Q 001584 630 RSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAP-----FLEESLKI----LVRHASYFHEDVRYQAVFALKNILTAA 700 (1049)
Q Consensus 630 ~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~~~~~~-----~~~~~~~~----l~~~~~~~~~~vr~~a~~~l~~l~~~~ 700 (1049)
+ +.-+..+.+++.+++..++.|.- -+...++. +-.+..+.++++..+|..++..++...
T Consensus 1067 ---k---------qwtet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~si 1134 (1610)
T KOG1848|consen 1067 ---K---------QWTETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSI 1134 (1610)
T ss_pred ---h---------hhhhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHH
Confidence 0 01234566677776665544322 23333444 344456778889999999988876543
No 343
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=69.30 E-value=69 Score=27.81 Aligned_cols=72 Identities=18% Similarity=0.152 Sum_probs=49.9
Q ss_pred chHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHH--HHHHHHh----hc--CCCChhHHHHHHHHHHHh
Q 001584 334 VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLES--VLHIVLG----AL--RDPEQFVRGAASFALGQF 405 (1049)
Q Consensus 334 ~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~--i~~~l~~----~l--~d~~~~vr~~a~~~l~~l 405 (1049)
....++..+..-+.+.+|+...-|+..+-.+.++|++.+...+.. .+..++. .. .+.+..||..+...+...
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 345677777777888899999999999999999998766544321 2222221 11 246788999888777654
No 344
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=68.99 E-value=2.7e+02 Score=33.68 Aligned_cols=39 Identities=10% Similarity=0.068 Sum_probs=28.7
Q ss_pred CchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhcc
Q 001584 559 FSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCN 597 (1049)
Q Consensus 559 ~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~ 597 (1049)
+-.+|..+..++.+++..+....-.-+-.++..+++...
T Consensus 486 ~~qvr~l~~~~l~N~a~~C~t~~~~~lldi~EA~~~rs~ 524 (1697)
T KOG3687|consen 486 DHQVRKLATQLLVNLAEGCHTHHFNSLLDIIEAVMARSL 524 (1697)
T ss_pred hhHHHHHHHHHHHHHHhhcchhcchhHHHHHHHHHhccc
Confidence 457899999999999998876544445566777776643
No 345
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=68.92 E-value=2.8e+02 Score=34.37 Aligned_cols=127 Identities=13% Similarity=0.197 Sum_probs=78.6
Q ss_pred HhHHHHHHHHHhhcChHHHHHhHHHHHH-HHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCC
Q 001584 354 REAAVTAIGIISEGCAEWMKEKLESVLH-IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES 432 (1049)
Q Consensus 354 r~~al~~l~~i~~~~~~~~~~~l~~i~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~ 432 (1049)
|...+...........+.+...+..++. .++...+|-.+.+|..++..||-.....+..+-+. ..+..+-=.|.|.+
T Consensus 262 rle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~d--sYLKYiGWtLsDk~ 339 (1048)
T KOG2011|consen 262 RLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSD--SYLKYIGWTLSDKN 339 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcc--hHHHHhcceeecCc
Confidence 5666666555555545555555556664 33356689999999999999999888876544221 13333333577999
Q ss_pred hHHHHHHHHHHHHHHHhhc--cccccchHHHHHHHHHhh-cCCCHhHHHHHHH
Q 001584 433 DEVKEKSYYALAAFCEDMG--EEILPFLDPLMGKLLAAL-ENSPRNLQETCMS 482 (1049)
Q Consensus 433 ~~v~~~a~~~l~~l~~~~~--~~l~~~~~~ll~~l~~~l-~~~~~~v~~~~~~ 482 (1049)
..||..++.+|..+.+.-. ..+.-+...+=..++... .+.+..||...+.
T Consensus 340 ~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~ 392 (1048)
T KOG2011|consen 340 GTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLV 392 (1048)
T ss_pred cHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHH
Confidence 9999999999999987721 122233333334444444 3344555555444
No 346
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=68.83 E-value=18 Score=29.80 Aligned_cols=59 Identities=19% Similarity=0.156 Sum_probs=44.9
Q ss_pred CCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCCh--HHHHHHHHHHHHHH
Q 001584 389 DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESD--EVKEKSYYALAAFC 447 (1049)
Q Consensus 389 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~--~v~~~a~~~l~~l~ 447 (1049)
+.|..+|.-|...++.++..++......-+.++..+.+.+.|++. ..+-.|+.+|..+-
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 568899999999999999988754444456788888888887753 34566777777663
No 347
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=68.57 E-value=93 Score=28.25 Aligned_cols=80 Identities=9% Similarity=0.072 Sum_probs=56.0
Q ss_pred hHHHHHHHHHhhcC-CCHhHHHHHHHHHHHHHHHhhhhccccH--HHHHHH-HHHHHhccChhhhhhHHHHHHHHHHHHH
Q 001584 458 LDPLMGKLLAALEN-SPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLEL-LKIFMVLTNDEDLRSRARATELLGLVAE 533 (1049)
Q Consensus 458 ~~~ll~~l~~~l~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~-l~~~l~~~~~~~~~~r~~a~~~l~~l~~ 533 (1049)
-...+..+..-+.. .++.+...++..+..++..+|..|...+ ..++.- |.+++....+....++.+.++.+...+.
T Consensus 36 ~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 36 PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 34666677776764 5788999999999999999998776544 346664 6666653333334567777888888777
Q ss_pred hhch
Q 001584 534 SVGR 537 (1049)
Q Consensus 534 ~~~~ 537 (1049)
.++.
T Consensus 116 ~f~~ 119 (141)
T cd03565 116 AFRG 119 (141)
T ss_pred HhCC
Confidence 7643
No 348
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=68.42 E-value=41 Score=33.09 Aligned_cols=93 Identities=16% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHcchhch---HHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHH
Q 001584 321 EVIDTMALNLAKHVF---PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGA 397 (1049)
Q Consensus 321 ~~l~~l~~~~~~~~~---~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~ 397 (1049)
...+.++..+...++ +...+.+.+...+++--.|.+|+.+.-...+. ...+.+...+...+.|++..|+.+
T Consensus 96 d~vD~~~~~i~g~~~~~~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~------~~~~~l~~~~~~~~~d~e~fI~KA 169 (208)
T cd07064 96 DTVDSLAKVVGGILLADYPEFEPVMDEWSTDENFWLRRTAILHQLKYKEK------TDTDLLFEIILANLGSKEFFIRKA 169 (208)
T ss_pred HHHHHHHHHHhHHHHhCChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc------cCHHHHHHHHHHhCCChHHHHHHH
Q ss_pred HHHHHHHhHhhhcHHHHhhhhh
Q 001584 398 ASFALGQFAEYLQPEIVSHYES 419 (1049)
Q Consensus 398 a~~~l~~l~~~~~~~~~~~~~~ 419 (1049)
..|+|..++..-++.+..++..
T Consensus 170 iGW~LRe~~k~d~~~V~~fl~~ 191 (208)
T cd07064 170 IGWALREYSKTNPDWVRDFVAA 191 (208)
T ss_pred HHHHHHHHhccCHHHHHHHHHH
No 349
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=68.41 E-value=2.3e+02 Score=32.69 Aligned_cols=97 Identities=11% Similarity=0.104 Sum_probs=60.9
Q ss_pred cHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHH-HHhHHHHHHHHHhhcCCCCh
Q 001584 314 APDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWM-KEKLESVLHIVLGALRDPEQ 392 (1049)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~-~~~l~~i~~~l~~~l~d~~~ 392 (1049)
+.+......+..+....+...|+.+-..+.+++-+++.-...-+......++......+ ..++..+...+...-.++..
T Consensus 243 ~lY~~vl~~Lctfi~~~~~s~f~eLE~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~~Lik~lp~~~~~ 322 (559)
T PF14868_consen 243 SLYQHVLVHLCTFIASLSPSAFPELERFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHHVNLLAHLIKSLPSSSYQ 322 (559)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHcCCcchh
Confidence 45666667777777777777899888888888888888888888877777776544443 33454444433333333322
Q ss_pred hHHHHHHHHHHHhHhhhcHH
Q 001584 393 FVRGAASFALGQFAEYLQPE 412 (1049)
Q Consensus 393 ~vr~~a~~~l~~l~~~~~~~ 412 (1049)
.+ .-...|+++...+.++
T Consensus 323 ~~--~L~~LL~Rl~~~m~~~ 340 (559)
T PF14868_consen 323 LI--NLSILLRRLFFLMAPD 340 (559)
T ss_pred Hh--hHHHHHHHHHHhcCHH
Confidence 22 2444577776666553
No 350
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=68.16 E-value=1.7e+02 Score=31.18 Aligned_cols=62 Identities=18% Similarity=0.177 Sum_probs=30.6
Q ss_pred HhHHHHHHHHHHHHHHHhh-hhccccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhc
Q 001584 474 RNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVG 536 (1049)
Q Consensus 474 ~~v~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~ 536 (1049)
.+.+-..+.+++-+..... +.....++.++.+|+..+...+..+...+.+ .+|+-.+-..+|
T Consensus 255 e~rkL~lLK~lAEMss~ttaq~a~q~Lpsi~elLk~yMpa~kt~ee~~fsy-vEClly~~h~Lg 317 (460)
T KOG2213|consen 255 EERKLDLLKALAEMSSYTTAQAARQMLPSIVELLKEYMPAPKTGEEMQFSY-VECLLYALHHLG 317 (460)
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHhcccCCccHHHHHHH-HHHHHHHHHHHh
Confidence 4455555555554433221 1223344556666666665554443333333 566666555555
No 351
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=67.16 E-value=7.7 Score=25.77 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=24.2
Q ss_pred hHHHHHHhcCCCChHhHHHHHHHHHHHH
Q 001584 867 VMPLVLKELASPDAMNRRNAAFCVGELC 894 (1049)
Q Consensus 867 i~~~l~~~l~~~~~~vr~~a~~~lg~l~ 894 (1049)
.++.+++.+..++++++..++++|+.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5777888888889999999999999875
No 352
>KOG1810 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=67.04 E-value=2.7e+02 Score=34.86 Aligned_cols=162 Identities=11% Similarity=0.048 Sum_probs=90.7
Q ss_pred ChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc-----hhchHHHHHHHHhhhcCCChhHHhHHHHHHHH
Q 001584 289 LVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-----KHVFPPVFEFASVSCQNASPKYREAAVTAIGI 363 (1049)
Q Consensus 289 ~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~-----~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~ 363 (1049)
.++..+..++...........++...++.-|..++..+...-. ..+....+..-.+.+.++-|..|.+|...++.
T Consensus 776 ll~r~~~~Ll~ia~~p~~~~~~~~~~p~VHA~NvmkaIf~~~~LS~~~sef~s~Al~lAi~~fs~~~W~~RN~atlLfaA 855 (1417)
T KOG1810|consen 776 LLPRCFCKLLKIAECPLPGEWGEGDEPRVHAMNVMKAIFTSSILSNERSEFQSRALRLAIEGFSHDMWAERNSATLLFAA 855 (1417)
T ss_pred hhHHHHHHHHHHhcCCCccccCCCcchhhhhHHHHHHHHccchhhHHHHHHHHHHHHHHHHhcCchHHhhhhhHHHHHHH
Confidence 3344444444444444433333344677778888877664322 23444555555566777779999999988877
Q ss_pred HhhcCh-----------------HHHHHhHHHHHHHHHhhcC----CCChhH-HHHHHHHHHHhHhhhcH-HHH---hhh
Q 001584 364 ISEGCA-----------------EWMKEKLESVLHIVLGALR----DPEQFV-RGAASFALGQFAEYLQP-EIV---SHY 417 (1049)
Q Consensus 364 i~~~~~-----------------~~~~~~l~~i~~~l~~~l~----d~~~~v-r~~a~~~l~~l~~~~~~-~~~---~~~ 417 (1049)
+..... ..+-...+.+.|.+...|+ ++...- -..++|.+--+...+.+ ... -.+
T Consensus 856 Li~RvfGv~~s~~~~~~r~~~S~~~FFtkyp~L~~~ll~~Less~a~~sgs~q~s~aL~piLl~LSrL~~~~~~~~~~~l 935 (1417)
T KOG1810|consen 856 LINRVFGVIRSRLCLDHRNRLSGLEFFTKYPTLHPLLLTELESSDAQLSGSEQSSLALWPILLMLSRLYPSAPRSATLGL 935 (1417)
T ss_pred HHHHHHHhhhHHhhcccccccchhhhhhcCccHHHHHHHHhhhhccCCCcccCccccHHHHHHHHHhhcccCCccccCCc
Confidence 654211 1122334566777775543 110000 01123322222222211 111 124
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh
Q 001584 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (1049)
Q Consensus 418 ~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~ 450 (1049)
...+|.+.++....+-++|..|..++..++...
T Consensus 936 s~F~p~l~ect~q~~~~vRemAs~vl~~L~~~~ 968 (1417)
T KOG1810|consen 936 SVFVPFLQECTCQSNLKVREMASLVLLALVDAV 968 (1417)
T ss_pred hhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 578899999988888999999999999988774
No 353
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=66.74 E-value=24 Score=31.07 Aligned_cols=74 Identities=23% Similarity=0.321 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhhccCCCcccchhhhHhHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhc
Q 001584 821 IFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNG 897 (1049)
Q Consensus 821 ~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~ 897 (1049)
++..++|.+.+.++.+...+.+..++-+++.+....+-. ...+..++..+++....... ...+.-++..+++..
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~-~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS-DEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc-HHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 677899999999996666678999999999998764322 23344445555444443333 466778888888665
No 354
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=66.08 E-value=45 Score=32.33 Aligned_cols=83 Identities=24% Similarity=0.275 Sum_probs=56.4
Q ss_pred HHHHHHHHcc-hhchHHHHHHHHhhhcCCC-hhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHH
Q 001584 322 VIDTMALNLA-KHVFPPVFEFASVSCQNAS-PKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAAS 399 (1049)
Q Consensus 322 ~l~~l~~~~~-~~~~~~ll~~l~~~l~~~~-~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~ 399 (1049)
.++.++..+. -..++.+++......++.+ |..|.+....+...-++ .....+++.+-..+.|.+..||.+..
T Consensus 102 vvD~la~~~V~~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~------~~~~~if~i~E~~l~d~e~fV~KAig 175 (222)
T COG4912 102 VVDTLANHFVGIPLWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKT------LDLLEIFEIIELLLGDKEFFVQKAIG 175 (222)
T ss_pred HHHHHHHHhhccccCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCc------cchhHHHHHHHHHccChHHHHHHHHH
Confidence 3444555444 3567777777755555555 55555555555555443 22336888889999999999999999
Q ss_pred HHHHHhHhhhc
Q 001584 400 FALGQFAEYLQ 410 (1049)
Q Consensus 400 ~~l~~l~~~~~ 410 (1049)
|+|.+++.+..
T Consensus 176 WaLrq~~k~~~ 186 (222)
T COG4912 176 WALRQIGKHSN 186 (222)
T ss_pred HHHHHHHhhch
Confidence 99999998543
No 355
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=65.25 E-value=38 Score=38.56 Aligned_cols=240 Identities=13% Similarity=0.135 Sum_probs=120.7
Q ss_pred chHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhh-----cC------CCChhHHHHHHHHH
Q 001584 334 VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGA-----LR------DPEQFVRGAASFAL 402 (1049)
Q Consensus 334 ~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~-----l~------d~~~~vr~~a~~~l 402 (1049)
++..++.++....++.+...|..+...++.+....+-...+..-+++....+. ++ +.++.+-..++..+
T Consensus 243 ~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~ 322 (993)
T COG5234 243 YLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFF 322 (993)
T ss_pred HHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHH
Confidence 34556666666777788899999999998888765433322222244333332 22 24555544444444
Q ss_pred HHhHhhhcHHHHhhhhhHHHHHHHhccCCC--------hHHHHHHHHHHHHHHHhhccccccchHHH-HHHHHH-hhcCC
Q 001584 403 GQFAEYLQPEIVSHYESVLPCILNALEDES--------DEVKEKSYYALAAFCEDMGEEILPFLDPL-MGKLLA-ALENS 472 (1049)
Q Consensus 403 ~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~--------~~v~~~a~~~l~~l~~~~~~~l~~~~~~l-l~~l~~-~l~~~ 472 (1049)
+ ++...+-+..+.+ +.+.+.+++.-.. ..+|.+++..+-.+.+.....+.|-+... ...+++ .+-++
T Consensus 323 a-la~~~~id~~d~~--i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDp 399 (993)
T COG5234 323 A-LAGAGLIDYSDCL--ILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDP 399 (993)
T ss_pred H-Hhhccccchhhhh--hhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCc
Confidence 4 3333322222322 4455555555332 25788888888877776555555544433 333444 45667
Q ss_pred CHhHHHHHHHHHHHHHHHhhhhcc-ccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHH-
Q 001584 473 PRNLQETCMSAIGSVAAAAEQAFI-PYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEA- 550 (1049)
Q Consensus 473 ~~~v~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~- 550 (1049)
.-.+|..+..++-.+. |..+. +.-...+.++ + +..+. +.-+|-|.+.+.+.+..-...+..+++.
T Consensus 400 el~vRr~a~Aal~E~i---GR~~s~a~g~~lIslI----N-----~~sv~-r~s~csg~~~r~~~~~~k~~~CedVF~di 466 (993)
T COG5234 400 ELNVRRAATAALFEVI---GRHASIADGLSLISLI----N-----YVSVT-RISNCSGDLCRKVAHFPKFRSCEDVFQDI 466 (993)
T ss_pred hhhhhhHHHHHHHHHh---ccCCCcccchhhhhhc----c-----ceecc-hhhhcchHHHHHhcCccccchHHHHHHHH
Confidence 7778877776554433 22211 1112222222 1 11221 1346777777766533211222234433
Q ss_pred HHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhH
Q 001584 551 AISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVP 590 (1049)
Q Consensus 551 l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i~~ 590 (1049)
+++.+..=++.++....-++..+.+ .|.....|++.++.
T Consensus 467 Ll~Nl~H~~~~~k~~~~y~l~~liK-~~~~~p~yl~~Il~ 505 (993)
T COG5234 467 LLTNLQHWDVKVKQLSAYSLRQLIK-YPKELPIYLPPILD 505 (993)
T ss_pred HHhhhhccchhhhhhccccHHHHhc-CcccCchhhhHHhh
Confidence 5555443334455555555666633 23333335555443
No 356
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.18 E-value=2.4e+02 Score=30.98 Aligned_cols=95 Identities=16% Similarity=0.202 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHH
Q 001584 135 REVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQC 214 (1049)
Q Consensus 135 ~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 214 (1049)
-..+++.+..+++...-.+...-..++.++.++|.- ++...-......|..+.-+.+.+..... ..+++-+.++
T Consensus 280 Lrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr-~n~~Ll~lv~~FLkKLSIf~eNK~~M~~-----~~iveKL~kl 353 (791)
T KOG1222|consen 280 LRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDR-SNSSLLTLVIKFLKKLSIFDENKIVMEQ-----NGIVEKLLKL 353 (791)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcc-cchHHHHHHHHHHHHhhhhccchHHHHh-----ccHHHHHHHh
Confidence 345666777777766654444556788999999987 6677777777777776666544322222 1233344445
Q ss_pred hhcCCHHHHHHHHHHHHHHhc
Q 001584 215 LASGEEDVAVIAFEIFDELIE 235 (1049)
Q Consensus 215 l~~~~~~~~~~~~~~l~~l~~ 235 (1049)
+....++.+...+..+-++.-
T Consensus 354 fp~~h~dL~~~tl~LlfNlSF 374 (791)
T KOG1222|consen 354 FPIQHPDLRKATLMLLFNLSF 374 (791)
T ss_pred cCCCCHHHHHHHHHHhhhccc
Confidence 666888888888888777643
No 357
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=62.59 E-value=3.7e+02 Score=33.02 Aligned_cols=60 Identities=22% Similarity=0.233 Sum_probs=45.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCc---------HHHHHHHHhcCCChhHHHHHHHHHHHhhhh
Q 001584 7 LLLIQFLMPDNDARRQAEDQIKRLAKDPQV---------VPALVQHLRTAKTPNVRQLAAVLLRKKITG 66 (1049)
Q Consensus 7 ~ll~~~~s~d~~~r~~a~~~L~~~~~~p~~---------~~~l~~il~~~~~~~~R~~a~~~l~~~i~~ 66 (1049)
..|-+++.+-+.-|..+-..|-.+.++|+. +..++.+++.+..++.|-.|+-+|-+....
T Consensus 1816 ~~LL~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1816 TTLLTLLHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 344455555667888899988888877653 356777888888999999999999888643
No 358
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=61.99 E-value=98 Score=28.59 Aligned_cols=82 Identities=21% Similarity=0.331 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhHHHHHHHHhHHHHHHHHhCCCh
Q 001584 739 AQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHF 818 (1049)
Q Consensus 739 ~~~~~~l~~~i~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 818 (1049)
..+.+++..++-++....+.|.+-++++=...-+.+. +........+ +...++..++..++.-|
T Consensus 39 ~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~---------------~~~~~~~R~i-tfy~l~~~l~e~LKslf 102 (153)
T PF08146_consen 39 SSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKS---------------DSSGSRARLI-TFYRLLNALAEKLKSLF 102 (153)
T ss_pred HHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcc---------------cCcCchhHHH-HHHHHHHHHHHHHHHHH
Confidence 3455666666666666666665555443221111100 0011222233 67788899999999999
Q ss_pred HHHHHHHHHHHHHhhccC
Q 001584 819 APIFAKLFDPLMKFAKSS 836 (1049)
Q Consensus 819 ~~~~~~l~~~l~~~l~~~ 836 (1049)
.||+..++......|+..
T Consensus 103 ~~Y~~~ll~~~~~~L~~~ 120 (153)
T PF08146_consen 103 TPYFSYLLDNAVDLLKQF 120 (153)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999988887654
No 359
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=61.88 E-value=1.5e+02 Score=30.39 Aligned_cols=153 Identities=15% Similarity=0.182 Sum_probs=82.6
Q ss_pred hhHHhHHHHHHHHHhhcCh-------HH-HHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhc----HHHHhhh
Q 001584 351 PKYREAAVTAIGIISEGCA-------EW-MKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQ----PEIVSHY 417 (1049)
Q Consensus 351 ~~~r~~al~~l~~i~~~~~-------~~-~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~ 417 (1049)
|+.-+.+...++.+++.++ .. -.+.+..+-..++..|. =.|.-+-.++..++..++..+. +.+...-
T Consensus 61 Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP 140 (255)
T PF10350_consen 61 WRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELP 140 (255)
T ss_pred HHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhH
Confidence 6655555555666664321 11 12334455555554443 2455566667777777777664 3444444
Q ss_pred hhHHHHHHHhccCC-Ch---HHHHHHH--HHHHHHHHhhccccccchHHHHHHHHHhhcCCCH--------hHHHHHHHH
Q 001584 418 ESVLPCILNALEDE-SD---EVKEKSY--YALAAFCEDMGEEILPFLDPLMGKLLAALENSPR--------NLQETCMSA 483 (1049)
Q Consensus 418 ~~ll~~l~~~l~~~-~~---~v~~~a~--~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~--------~v~~~~~~~ 483 (1049)
...+..++..+.+. .. -.|..|- .++..++..-+..-.+.++..+..|++....+.. ..+..++.+
T Consensus 141 ~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNi 220 (255)
T PF10350_consen 141 EEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNI 220 (255)
T ss_pred HHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHH
Confidence 55666666666665 22 2343322 4445555544433236778888888887665432 367777777
Q ss_pred HHHHHHHh--hhhccccHHHHH
Q 001584 484 IGSVAAAA--EQAFIPYAERVL 503 (1049)
Q Consensus 484 l~~l~~~~--~~~~~~~~~~~~ 503 (1049)
+..+..-. ++...+|+.+.+
T Consensus 221 Lr~if~ds~L~~~~~~yi~~~l 242 (255)
T PF10350_consen 221 LRAIFRDSKLSEDVSPYIEDAL 242 (255)
T ss_pred HHHHHhcchhHHHHHHHHHHHH
Confidence 77665432 344455555443
No 360
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=60.00 E-value=2.9e+02 Score=30.97 Aligned_cols=96 Identities=10% Similarity=0.103 Sum_probs=53.5
Q ss_pred HHHhHHHHHHHHhCCChHHHHH-HHHHHHHHhhccCCCcccchhhhHhHHHHHhhcCCchhhc-HhhhHHHHHHhcCCCC
Q 001584 802 AVSDLLPAFAKSMGPHFAPIFA-KLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAY-VDRVMPLVLKELASPD 879 (1049)
Q Consensus 802 ~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-~~~i~~~l~~~l~~~~ 879 (1049)
+++.|+.++.++..--=....+ .+...+++.+.+++. .+...+.+.+...+--+.+--..+ -..++..+++.+...|
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pei-mi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEI-MIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccc-eeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 5666666666553110000111 355566777776443 223333333333322222221223 3578888888888888
Q ss_pred hHhHHHHHHHHHHHHhhcC
Q 001584 880 AMNRRNAAFCVGELCKNGG 898 (1049)
Q Consensus 880 ~~vr~~a~~~lg~l~~~~~ 898 (1049)
...+.+..|++..+.....
T Consensus 487 daLqans~wvlrHlmyncq 505 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQ 505 (743)
T ss_pred hhhhhcchhhhhhhhhcCc
Confidence 8999999999998766553
No 361
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=57.53 E-value=1.1e+02 Score=32.54 Aligned_cols=76 Identities=8% Similarity=0.057 Sum_probs=55.4
Q ss_pred hHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHh--HHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhc
Q 001584 335 FPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEK--LESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQ 410 (1049)
Q Consensus 335 ~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~--l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~ 410 (1049)
-...+..|...+.+.++.+-.-|+..++.++++|++.+... ..++...+...+. ..|+.|+......+..+++.++
T Consensus 43 ~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K 121 (462)
T KOG2199|consen 43 GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFK 121 (462)
T ss_pred cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc
Confidence 34566677777888999999999999999999998766543 3345555556665 5788888777777766666554
No 362
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=55.02 E-value=2.4e+02 Score=28.49 Aligned_cols=122 Identities=18% Similarity=0.214 Sum_probs=78.0
Q ss_pred cCCCChhHHHHHHHHHHHhHhhhc------H---HHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhcc-----
Q 001584 387 LRDPEQFVRGAASFALGQFAEYLQ------P---EIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE----- 452 (1049)
Q Consensus 387 l~d~~~~vr~~a~~~l~~l~~~~~------~---~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~----- 452 (1049)
++|+++.|...++.+.+.+....- + +....+..+-..++..+.+.++.||..|++.+..++-....
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 577888888888777766543321 1 12234456667778888888999999999999988754310
Q ss_pred -------------ccc---cc---------hHHHHHHHHHhhcCCC--HhHHHHHHHHHHHHHHHhhhhccccHHHHHHH
Q 001584 453 -------------EIL---PF---------LDPLMGKLLAALENSP--RNLQETCMSAIGSVAAAAEQAFIPYAERVLEL 505 (1049)
Q Consensus 453 -------------~l~---~~---------~~~ll~~l~~~l~~~~--~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 505 (1049)
.+. |+ ...+++.|+..+.... ..+-..++.+++.++..-+ .|+..+++.
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP----~~~~~Il~~ 157 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRP----QFMSRILPA 157 (239)
T ss_dssp ---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSG----GGHHHHHHH
T ss_pred ccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhh----HHHHHHHHH
Confidence 011 12 2367778888877655 5566666777777665432 366788888
Q ss_pred HHHHHhc
Q 001584 506 LKIFMVL 512 (1049)
Q Consensus 506 l~~~l~~ 512 (1049)
+..+-..
T Consensus 158 ll~~~~~ 164 (239)
T PF11935_consen 158 LLSFNPN 164 (239)
T ss_dssp HHHHHHS
T ss_pred HHhcCcc
Confidence 8776543
No 363
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=53.94 E-value=69 Score=28.11 Aligned_cols=73 Identities=15% Similarity=0.253 Sum_probs=51.1
Q ss_pred hchHHHHHHHHhhhc-CCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhh
Q 001584 333 HVFPPVFEFASVSCQ-NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEY 408 (1049)
Q Consensus 333 ~~~~~ll~~l~~~l~-~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 408 (1049)
++++.++|.+...+. +.....|.+++..++.++...+=. .+.++.++..+......... ...+..++..++..
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~-~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS-DEVLNALMESILKNWTQETV--QRQALICLIVLCQS 75 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc-HHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHc
Confidence 467788999999888 677889999999999998764311 12355666666666655444 45677777777644
No 364
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=53.92 E-value=1.1e+02 Score=28.26 Aligned_cols=74 Identities=14% Similarity=0.168 Sum_probs=47.7
Q ss_pred hHHHHHHHhccCC--ChHHHHHHHHHHHHHHHhhccccccch-HHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhh
Q 001584 419 SVLPCILNALEDE--SDEVKEKSYYALAAFCEDMGEEILPFL-DPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (1049)
Q Consensus 419 ~ll~~l~~~l~~~--~~~v~~~a~~~l~~l~~~~~~~l~~~~-~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~ 492 (1049)
.++..+...++.+ +..+...|...|.+++.+.+..-.... +--++.|...++.+++.++..++..+.++....+
T Consensus 58 ~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 58 SFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 3445555554433 467888999999999876543111111 1225667777888899999999988887765543
No 365
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=53.26 E-value=22 Score=34.08 Aligned_cols=71 Identities=13% Similarity=0.228 Sum_probs=49.7
Q ss_pred HHHHHHHhhccCCCcccchhhhHhHHHHHhhcCCchhhcH--hhhHHHHHHhcCCCChHhHHHHHHHHHHHHh
Q 001584 825 LFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYV--DRVMPLVLKELASPDAMNRRNAAFCVGELCK 895 (1049)
Q Consensus 825 l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~vr~~a~~~lg~l~~ 895 (1049)
++|.+...-+++...-.|..+++++|.+++.....+..++ .+++|.+++.+...+.--+..|++.++.+.-
T Consensus 146 lypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil~ 218 (315)
T COG5209 146 LYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILG 218 (315)
T ss_pred eHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 4554444333333344688999999999998766666553 6889999988877766667777877777653
No 366
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=53.20 E-value=6.7e+02 Score=33.13 Aligned_cols=141 Identities=13% Similarity=0.045 Sum_probs=81.2
Q ss_pred ChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcC
Q 001584 289 LVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC 368 (1049)
Q Consensus 289 ~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~ 368 (1049)
++++++...-.+|...+. .++..+......+...+....-..++..+..++.+.+.....+|+..|..+++..
T Consensus 432 ~f~siL~la~~Ll~S~e~-------~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~ 504 (1426)
T PF14631_consen 432 YFPSILSLAQSLLRSKEP-------SVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKN 504 (1426)
T ss_dssp SHHHHHHHHHHHHTSSSH-------HHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCCCH-------HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcc
Confidence 666666655555554433 6778888887777776654334556666666666667777789999999999888
Q ss_pred hHHHHHhHHHHHHHHHhhcCCC-ChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHH
Q 001584 369 AEWMKEKLESVLHIVLGALRDP-EQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEK 438 (1049)
Q Consensus 369 ~~~~~~~l~~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~ 438 (1049)
++.+.++. ..+..++..+.+= .+.+|. .+..++.++-.-.......-+++--.+-+.|.+++.+.+..
T Consensus 505 ~~~l~~fa-~~l~giLD~l~~Ls~~qiR~-lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~ 573 (1426)
T PF14631_consen 505 PSELQPFA-TFLKGILDYLDNLSLQQIRK-LFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRI 573 (1426)
T ss_dssp HHHHHHTH-HHHHGGGGGGGG--HHHHHH-HHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHhcCCHHHHHH-HHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHH
Confidence 87777663 3444455555543 334554 36666666533222111122333333446778887777643
No 367
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=53.01 E-value=20 Score=21.94 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=12.9
Q ss_pred hhHHhHHHHHHHHHh
Q 001584 351 PKYREAAVTAIGIIS 365 (1049)
Q Consensus 351 ~~~r~~al~~l~~i~ 365 (1049)
|..|+.+..+||.+.
T Consensus 1 ~~vR~~aa~aLg~~~ 15 (30)
T smart00567 1 PLVRHEAAFALGQLG 15 (30)
T ss_pred CHHHHHHHHHHHHcC
Confidence 678999999999884
No 368
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=52.76 E-value=2.6e+02 Score=28.27 Aligned_cols=47 Identities=30% Similarity=0.310 Sum_probs=33.4
Q ss_pred HhhhhhhCCCCCChhHHhhHHHHHHHHHHhCCCCCC-hhhHHHHHHhh
Q 001584 910 RGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIP-LNQVLPVLLKV 956 (1049)
Q Consensus 910 ~~L~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~-~~~~l~~~l~~ 956 (1049)
+.|...+.++..++.+|.+|+++++.+...+|..=. +-+++..++..
T Consensus 114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~ 161 (249)
T PF06685_consen 114 EPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNY 161 (249)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 455566766777889999999999999988765422 44555555544
No 369
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=52.42 E-value=3.3e+02 Score=29.35 Aligned_cols=169 Identities=13% Similarity=0.114 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh-cc-CCCCCCcchHHHHHHhccCC--------------CHHHHHHHHH
Q 001584 77 QLVKQSLIESITLEHSAPVRRASANVVSIIAK-YA-VPAGEWPDLLPFLFQFSQSE--------------QEEHREVALI 140 (1049)
Q Consensus 77 ~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~-~~-~~~~~w~~ll~~l~~~l~~~--------------~~~~~~~al~ 140 (1049)
....+.++++|..|.+|.|-..+-.-+..... .. +-......+...+.+.+.+. ..++....+.
T Consensus 140 s~~~~~il~~L~~e~dWeV~s~VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~~ 219 (356)
T PF03542_consen 140 SEWFSVILQCLEHETDWEVYSYVLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVFP 219 (356)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHH
Confidence 35567888899989999887665444444322 11 11112344444444443221 1355556677
Q ss_pred HHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCH
Q 001584 141 LFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEE 220 (1049)
Q Consensus 141 ~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 220 (1049)
+|..++.+-...-...-.+++..+..++.+ . .-..++.+|.-++--.++ ....++|.++.-+.+.... .
T Consensus 220 ~Ls~LisYh~~~~k~~qd~iV~~l~~GL~s-~---~a~~CI~aLtic~~EmP~-----s~~k~L~~iL~kLs~i~tt--~ 288 (356)
T PF03542_consen 220 VLSALISYHSHFSKQEQDEIVRALESGLGS-K---TAKPCIHALTICCYEMPD-----SMKKLLPSILLKLSKISTT--P 288 (356)
T ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHhcc-C---cHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHhhccc--h
Confidence 777777554322223456788888888876 3 223345555544443322 2456778888777665433 3
Q ss_pred HHHHHHHHHHHHHhccC----CcchhhhHHHHHHHHHHhh
Q 001584 221 DVAVIAFEIFDELIESP----APLLGDSVKSIVHFSLEVS 256 (1049)
Q Consensus 221 ~~~~~~~~~l~~l~~~~----~~~~~~~~~~l~~~l~~~~ 256 (1049)
..+.-.++.|..+...+ ..|....+..++..++...
T Consensus 289 ~~Ai~ILEFLs~L~~lP~~ly~nF~~~~y~~VF~I~l~Y~ 328 (356)
T PF03542_consen 289 NMAIHILEFLSSLSRLPNHLYSNFTEDEYKRVFAIALPYT 328 (356)
T ss_pred hhHHHHHHHHHHHhhCcHHHhcCCCHHHHHHHHHHHhhcc
Confidence 45556788888777654 3455556666666666554
No 370
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=51.08 E-value=12 Score=22.35 Aligned_cols=14 Identities=57% Similarity=0.707 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhHh
Q 001584 394 VRGAASFALGQFAE 407 (1049)
Q Consensus 394 vr~~a~~~l~~l~~ 407 (1049)
||..|.++||++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 78899999998876
No 371
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.84 E-value=2.2e+02 Score=31.82 Aligned_cols=100 Identities=11% Similarity=0.030 Sum_probs=72.1
Q ss_pred hhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHH
Q 001584 345 SCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLP 422 (1049)
Q Consensus 345 ~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~ 422 (1049)
.+..+||..-..-|..+..--.+. ...+..|.+.+++.++.|+.-|+..|..+.+.|+..|...+ ..+++
T Consensus 13 ~l~~pDWa~NleIcD~IN~~~~~~--------~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~ 84 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINSTEGGP--------KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLN 84 (470)
T ss_pred cccCccHHHHHHHHHHHhcCccCc--------HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 456678865444443332222222 25677888899988889999999999999999988775433 56777
Q ss_pred HHHHhccCC--ChHHHHHHHHHHHHHHHhhcc
Q 001584 423 CILNALEDE--SDEVKEKSYYALAAFCEDMGE 452 (1049)
Q Consensus 423 ~l~~~l~~~--~~~v~~~a~~~l~~l~~~~~~ 452 (1049)
.++...... ...||..++..|...-+.++.
T Consensus 85 emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 85 EMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 787777655 568999999999988887754
No 372
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=49.80 E-value=1.7e+02 Score=28.32 Aligned_cols=134 Identities=10% Similarity=0.128 Sum_probs=70.1
Q ss_pred hhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCCh--hHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhc
Q 001584 351 PKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQ--FVRGAASFALGQFAEYLQPEIVSHYESVLPCILNAL 428 (1049)
Q Consensus 351 ~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l 428 (1049)
-++|..|..++..+...... -.++++ -.+.+...+..++. ..-..+.++...+..-+. +..|...++..++-..
T Consensus 21 DrvR~~A~~~l~~ll~~~~~-~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~--~~~y~~~ll~Glv~S~ 96 (193)
T PF12612_consen 21 DRVREVAGKCLQRLLHSQDP-TIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD--LPEYRYSLLSGLVVSA 96 (193)
T ss_pred HHHHHHHHHHHHHHhcCCCc-cccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc--cHHHHHHHHhHHHhcC
Confidence 46888888888888743211 001111 11222332322211 011122333333333222 2356667888888888
Q ss_pred cCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCC--CHhHHHHHHHHHHHHHH
Q 001584 429 EDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS--PRNLQETCMSAIGSVAA 489 (1049)
Q Consensus 429 ~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~--~~~v~~~~~~~l~~l~~ 489 (1049)
...+..+...+..+|..++... ..-...+..++..+...++.. +..+-.-+++++..+..
T Consensus 97 G~~tesl~~~s~~AL~~~~~~~-~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~ 158 (193)
T PF12612_consen 97 GGLTESLVRASSAALLSYLREL-SDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLS 158 (193)
T ss_pred CCCchhHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHh
Confidence 8877888888888998888754 111233455666666665542 23344455555555544
No 373
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.49 E-value=4.4e+02 Score=29.89 Aligned_cols=326 Identities=15% Similarity=0.113 Sum_probs=172.9
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcH--H---HHhh---hhhHHHHHHHh-ccCCChHHHHHHHHHHHHHHH
Q 001584 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP--E---IVSH---YESVLPCILNA-LEDESDEVKEKSYYALAAFCE 448 (1049)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~---~~~~---~~~ll~~l~~~-l~~~~~~v~~~a~~~l~~l~~ 448 (1049)
.++..++..+++. ..-..|..++..+...... + .... ...+++...+. ....+..-..+.+..+..+.+
T Consensus 199 pLi~l~F~sl~~~--~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~e 276 (559)
T KOG2081|consen 199 PLITLAFRSLSDD--ELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGE 276 (559)
T ss_pred HHHHHHHHHcccc--hhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHH
Confidence 3455566666633 3344555665555443321 0 1111 12333443332 222334444566677777666
Q ss_pred hhcccc---ccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhh--------hhccccHHHHHHHHHHHHhccC---
Q 001584 449 DMGEEI---LPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE--------QAFIPYAERVLELLKIFMVLTN--- 514 (1049)
Q Consensus 449 ~~~~~l---~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~--------~~~~~~~~~~~~~l~~~l~~~~--- 514 (1049)
.+...+ ..+.-.++..++-...+++.++-+..+..|-.+.+..- .-|.||+.+++..+..-.....
T Consensus 277 af~~~i~~np~~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~ 356 (559)
T KOG2081|consen 277 AFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQF 356 (559)
T ss_pred HHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccc
Confidence 553221 12444556666666667788888888888888776432 3577888888887777665322
Q ss_pred ------hhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhh
Q 001584 515 ------DEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLV 588 (1049)
Q Consensus 515 ------~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i 588 (1049)
++....|-+..+.+..++..+|.+. -+......+.+ +...|+..++++.++..++......=.+.+|.+
T Consensus 357 ~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e---~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pev 431 (559)
T KOG2081|consen 357 DLPEEESEFFEFRLKVGDVLKDVAFIIGSDE---CLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEV 431 (559)
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHhCcHH---HHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHH
Confidence 2223456667777777777777432 11122222222 355899999999999999988776666666666
Q ss_pred hHHHHhhccCCCCCccCCCCCchhhhccCCCCCCCcchhhcccccceeeeccchhhHHHHHHHHHHHHHHhhhhchhhHH
Q 001584 589 VPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLE 668 (1049)
Q Consensus 589 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~ 668 (1049)
+..+.+.-.+ . ..+..++..+|.+.+..... ...++
T Consensus 432 l~~i~nlp~Q----------------------------------------~---~~~~ts~ll~g~~~ew~~~~-p~~le 467 (559)
T KOG2081|consen 432 LKLICNLPEQ----------------------------------------A---PLRYTSILLLGEYSEWVEQH-PELLE 467 (559)
T ss_pred HHHHhCCccc----------------------------------------h---hHHHHHHHHHHHHHHHHHhC-cHHHH
Confidence 6665532111 1 14677888888887665321 01122
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 001584 669 ESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEI 748 (1049)
Q Consensus 669 ~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~ 748 (1049)
.+.+.+...... .....++..+...++..+... ...+.+.+..++..+...... .+... .+..++.+
T Consensus 468 ~v~~~~~~~~~~--~~~as~~a~~~~~i~~~c~~~-------~~~l~~~~~~l~~~l~~~~~~---~e~a~-l~~~~s~i 534 (559)
T KOG2081|consen 468 PVLRYIRQGLQL--KRLASAAALAFHRICSACRVQ-------MTCLIPSLLELIRSLDSTQIN---EEAAC-LLQGISLI 534 (559)
T ss_pred HHHHHHHHHhhh--cchhHHHHHHHHHHHHHHHHH-------hhhhhHHHHHHHHHHHHHhcc---HHHHH-HHHHHHHH
Confidence 222222222111 114455556666666654421 111223333333333332222 23333 77777777
Q ss_pred HHHhCCcccHHHHHHHHHH
Q 001584 749 INDYGYMAVEPYMSRLVDA 767 (1049)
Q Consensus 749 i~~~g~~~~~~~~~~l~~~ 767 (1049)
+...+..-.+..+.+++..
T Consensus 535 ~~~lp~~k~~~~~~el~~~ 553 (559)
T KOG2081|consen 535 ISNLPAHKAKIALEELCEP 553 (559)
T ss_pred HhcCCHhhhhHHHHHHhhH
Confidence 7766654445555555443
No 374
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=49.13 E-value=74 Score=24.93 Aligned_cols=57 Identities=14% Similarity=0.178 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHh-hhhHHHHHhcCCHHHHHHHHhhc
Q 001584 990 ELVNLFAEVVVSPEESSEVKSQVGMAFSHLISLY-GQQMQPLLSNLSPAHATALAAFA 1046 (1049)
Q Consensus 990 ~i~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~l~~~~~~~l~~~~ 1046 (1049)
.....+.+++.+...+..+|....-.++.....+ .......+..+|++.|..++..+
T Consensus 14 ~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~l 71 (77)
T PF03810_consen 14 GFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQL 71 (77)
T ss_dssp CHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHH
Confidence 3444555555455567889988888888766554 33335778899999999998764
No 375
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=47.39 E-value=4.1e+02 Score=29.00 Aligned_cols=154 Identities=12% Similarity=0.102 Sum_probs=85.9
Q ss_pred hcCCCcHHHHHHHHhcCC-ChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHH----HHHHHHhhcCCHHHHHHHHHHHHH
Q 001584 31 AKDPQVVPALVQHLRTAK-TPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ----SLIESITLEHSAPVRRASANVVSI 105 (1049)
Q Consensus 31 ~~~p~~~~~l~~il~~~~-~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~----~ll~~l~~e~~~~vr~~~~~~l~~ 105 (1049)
....+.+..|+..++... ..++|.-|+.+|..++.. +.++.+.. .++..-+........+..+.+++.
T Consensus 176 iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-------eN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~ 248 (832)
T KOG3678|consen 176 IRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA-------ENRDRVARIGLGVILNLAKEREPVELARSVAGILEH 248 (832)
T ss_pred hhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-------hhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHH
Confidence 344567788888887643 567899999998887532 22222211 222222222345666777788888
Q ss_pred HHhccCCC---CCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccH--HHHHHHHHHhhCCCCChHHHHHH
Q 001584 106 IAKYAVPA---GEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF--ADMQALLLKCLQDETSNRVRIAA 180 (1049)
Q Consensus 106 i~~~~~~~---~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~vr~~a 180 (1049)
+.++.... -.-...+..++-++.-.++.....+..+|+.++-+-+......+ ..+-..+..+... .+.-.|..|
T Consensus 249 mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~s-kDel~R~~A 327 (832)
T KOG3678|consen 249 MFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFS-KDELLRLHA 327 (832)
T ss_pred HhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcc-hHHHHHHHH
Confidence 87754210 00122344455556555665544455567766654442222111 1233344444444 677789999
Q ss_pred HHHHHHhhcccC
Q 001584 181 LKAIGSFLEFTN 192 (1049)
Q Consensus 181 ~~~l~~~~~~~~ 192 (1049)
+-+.+.++...+
T Consensus 328 ClAV~vlat~KE 339 (832)
T KOG3678|consen 328 CLAVAVLATNKE 339 (832)
T ss_pred HHHHhhhhhhhh
Confidence 999888877654
No 376
>PF14961 BROMI: Broad-minded protein
Probab=46.88 E-value=4.3e+02 Score=33.19 Aligned_cols=137 Identities=12% Similarity=0.087 Sum_probs=79.1
Q ss_pred HHHHHHhccCCC-HHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHH
Q 001584 120 LPFLFQFSQSEQ-EEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVV 198 (1049)
Q Consensus 120 l~~l~~~l~~~~-~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~ 198 (1049)
++.+.+.+..+. .++|..|++.|.......-- -.+.|+.+..-+..+|.| +++.+...+++...+.....+-....+
T Consensus 163 lq~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVl-s~E~W~~L~~~L~~~LsD-pD~~is~~~L~f~Ak~fssSpl~~trE 240 (1296)
T PF14961_consen 163 LQLIADKLDPGQPKEVRLEALQILCSAPPSDVL-SCESWSVLRENLTDALSD-PDPEISDASLRFHAKMFSSSPLNMTRE 240 (1296)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCChhhcc-ccccHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccCCchhhhHH
Confidence 455555555444 47788888887766432111 146899999999999999 999999999999988887764322112
Q ss_pred HHHhhhHHHHHHHHH---H-------hh--cCCHHHHHHHHHHHHHHhccCCc----chhhhHHHHHHHHHHhhhC
Q 001584 199 KFREFIPSILNVSRQ---C-------LA--SGEEDVAVIAFEIFDELIESPAP----LLGDSVKSIVHFSLEVSSS 258 (1049)
Q Consensus 199 ~~~~~~~~ll~~l~~---~-------l~--~~~~~~~~~~~~~l~~l~~~~~~----~~~~~~~~l~~~l~~~~~~ 258 (1049)
.+..++..+-..... . +. ..+.......++.+.++-+..|+ +-+.++.++++-.+.++..
T Consensus 241 iYtsL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiRhpeK~mEeIVEsTLsLLs~ 316 (1296)
T PF14961_consen 241 IYTSLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIRHPEKYMEEIVESTLSLLST 316 (1296)
T ss_pred HHHHHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhcCcHHHHHHHHHHHHHHhcc
Confidence 222222222111100 0 00 11112234556666666554443 4456667777766655543
No 377
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=44.50 E-value=5.8e+02 Score=29.86 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=70.8
Q ss_pred hhhHhHHHHHhhcCCchhhcHhhhHHHHHHhcC-CCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCCC---
Q 001584 844 MVVATLAEVARDMGSPIAAYVDRVMPLVLKELA-SPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDS--- 919 (1049)
Q Consensus 844 ~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~-~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~--- 919 (1049)
.-+..++..+..+... ...++..+++.-- ..+++++..-...++.|+...+. |+..++..|...+..+
T Consensus 55 ~~L~~L~~~Vs~Ld~~----~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~----yl~~vl~~LV~~f~p~~~~ 126 (563)
T PF05327_consen 55 RWLKALSSCVSLLDSS----CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQPK----YLSPVLSMLVKNFIPPPSS 126 (563)
T ss_dssp HHHHHHHHGGGGG-SC----CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GG----GHHHHHHHHHHGGGS-HHH
T ss_pred HHHHHHHHHHHHhhhH----HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHhccCCCcc
Confidence 3344444444444433 3445555554422 56777888888889999888766 7777777666666431
Q ss_pred ---------CCChhHHhhHHHHHHHHHHhCCCCCChhhHHHHHHhhCCCCCcHHhhHH-HHHHHHHHHhhCChhhc
Q 001584 920 ---------EPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMA-VYNCISTLVLSSNPQIL 985 (1049)
Q Consensus 920 ---------~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~l~~~l~~lp~~~d~~e~~~-~~~~l~~l~~~~~~~~~ 985 (1049)
+....+.+.+-.++.+|+...|.. ...+.+.+.+.+|.......... -.+.+..+.. +-|.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~vH~~L~~Il~lvP~s--~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~-Y~P~L~ 199 (563)
T PF05327_consen 127 IAEWPGCPPEKRREIYERVHDALQKILRLVPTS--PSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTE-YCPELR 199 (563)
T ss_dssp HHH---------------HHHHHHHHHHH-GGG--HHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHC-C-GGGH
T ss_pred ccccchhhhhhhhhhHHHHHHHHHHHHHHcCCC--HHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHc-chHHHH
Confidence 122356677888899998875543 46777888899998765544433 3555665554 445544
No 378
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=43.82 E-value=4.6e+02 Score=28.46 Aligned_cols=92 Identities=13% Similarity=0.102 Sum_probs=55.4
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh-ccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHH--HHHHhhhh
Q 001584 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDM-GEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGS--VAAAAEQA 494 (1049)
Q Consensus 418 ~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~-~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~--l~~~~~~~ 494 (1049)
+.++..+++.---.+..-...-+.-+..+++.. +..+.....++...+..++++++..|.+.|+..|+. +.....++
T Consensus 298 ~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n 377 (457)
T KOG2085|consen 298 ETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQN 377 (457)
T ss_pred HHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhc
Confidence 345555555433332221222345566666666 445667788899999999999999999999998874 23333333
Q ss_pred ccccHHHHHHHHHHH
Q 001584 495 FIPYAERVLELLKIF 509 (1049)
Q Consensus 495 ~~~~~~~~~~~l~~~ 509 (1049)
-.-.++.++|.|.+.
T Consensus 378 ~~~ilPiiFpaLyr~ 392 (457)
T KOG2085|consen 378 AEVILPIVFPALYRN 392 (457)
T ss_pred cceeeehhhHHHHHH
Confidence 333444455555443
No 379
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=43.60 E-value=1.6e+02 Score=26.53 Aligned_cols=80 Identities=26% Similarity=0.434 Sum_probs=53.3
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhcc-c--ccc
Q 001584 380 LHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE-E--ILP 456 (1049)
Q Consensus 380 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~-~--l~~ 456 (1049)
+..+++.|+-....++.+|..+|.. .. .-+++.+.+++.+.+++-..|......+..+++.+.. . -.+
T Consensus 10 F~~~L~~L~aS~qSi~kaa~fAlk~--~~-------~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~~ 80 (139)
T PF12243_consen 10 FTQLLRRLNASQQSIQKAAQFALKN--RD-------MEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNYP 80 (139)
T ss_pred HHHHHHHcchhHHHHHHHHHHHHHc--cc-------cHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccch
Confidence 3445556665666677777777754 22 2345888888899888877889999999999987732 2 356
Q ss_pred chHHHHHHHHHh
Q 001584 457 FLDPLMGKLLAA 468 (1049)
Q Consensus 457 ~~~~ll~~l~~~ 468 (1049)
|...+-..|...
T Consensus 81 Yv~~l~~dL~~I 92 (139)
T PF12243_consen 81 YVSMLQRDLPRI 92 (139)
T ss_pred hHHHHHHHHHHH
Confidence 666554444333
No 380
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=43.39 E-value=4.2e+02 Score=29.90 Aligned_cols=144 Identities=13% Similarity=0.124 Sum_probs=78.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCcH---------HHHHHHHhcCCChhHHHHHHHHHHHhhh------hhcc
Q 001584 5 LELLLIQFLMPDNDARRQAEDQIKRLAKDPQVV---------PALVQHLRTAKTPNVRQLAAVLLRKKIT------GHWA 69 (1049)
Q Consensus 5 l~~ll~~~~s~d~~~r~~a~~~L~~~~~~p~~~---------~~l~~il~~~~~~~~R~~a~~~l~~~i~------~~w~ 69 (1049)
..++..-++++++..+..|-.+|.++..+|.|+ ..|.+++.++..-..+.+-+..|+.... -.|.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 346777888999999999999998888877553 3455555544321222222222333321 3588
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCC---cchHHHHHHhccCCCHHHHHHHHHHHHHhh
Q 001584 70 KLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEW---PDLLPFLFQFSQSEQEEHREVALILFSSLT 146 (1049)
Q Consensus 70 ~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w---~~ll~~l~~~l~~~~~~~~~~al~~l~~l~ 146 (1049)
.++......+-... .... .+..+-..+...+..++........| ...+..+++.++..+......|+..+..++
T Consensus 165 ~~~~~fV~~~a~~V--~~~~-~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 165 SVSNDFVVSMASYV--NAKR-EDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred ecccHHHHHHHHHH--hhhh-hcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 87765554433322 1222 23444444555555544322111233 224566666666666555455666666666
Q ss_pred hhhhh
Q 001584 147 ETIGQ 151 (1049)
Q Consensus 147 ~~~~~ 151 (1049)
...++
T Consensus 242 ~~a~~ 246 (713)
T KOG2999|consen 242 RKAPD 246 (713)
T ss_pred hhCCh
Confidence 55554
No 381
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=42.71 E-value=4.7e+02 Score=28.33 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=38.1
Q ss_pred chhhhHhHHHHHhhcC----CchhhcHhhhHHHHHHhcC--CCChHhHHHHHHHHHHHHhhcC
Q 001584 842 RTMVVATLAEVARDMG----SPIAAYVDRVMPLVLKELA--SPDAMNRRNAAFCVGELCKNGG 898 (1049)
Q Consensus 842 r~~a~~~l~~l~~~~~----~~~~~~~~~i~~~l~~~l~--~~~~~vr~~a~~~lg~l~~~~~ 898 (1049)
-..++..+-++++..+ ....-.+..+.|.+++++- ++.+.+|..|...+-.++....
T Consensus 228 l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~ 290 (373)
T PF14911_consen 228 LASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQ 290 (373)
T ss_pred HHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccc
Confidence 4566777777777632 1123356677788887743 5567788888888888877654
No 382
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.92 E-value=2.4e+02 Score=31.62 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=72.8
Q ss_pred cCCHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccH--HHHHHHHHHh
Q 001584 90 EHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF--ADMQALLLKC 167 (1049)
Q Consensus 90 e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~--~~l~~~l~~~ 167 (1049)
++|+..--.+|+.|.. + + +.-++.+-.|..-+.+.++.+...||.+|..+++.++..|..++ .+++.-+...
T Consensus 16 ~pDWa~NleIcD~IN~----~-~-~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~ 89 (470)
T KOG1087|consen 16 EPDWALNLEICDLINS----T-E-GGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKR 89 (470)
T ss_pred CccHHHHHHHHHHHhc----C-c-cCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhc
Confidence 5788776666665543 1 1 34468888888889888888999999999999999998776444 2355556666
Q ss_pred hCCC-CChHHHHHHHHHHHHhhcccCC
Q 001584 168 LQDE-TSNRVRIAALKAIGSFLEFTND 193 (1049)
Q Consensus 168 l~~~-~~~~vr~~a~~~l~~~~~~~~~ 193 (1049)
.... .+..||..++..+..+......
T Consensus 90 ~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 90 PKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred cccCCcchhHHHHHHHHHHHHHHHccC
Confidence 6664 6788999999999888776643
No 383
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.70 E-value=4.3e+02 Score=27.51 Aligned_cols=108 Identities=17% Similarity=0.135 Sum_probs=63.6
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHH
Q 001584 120 LPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVK 199 (1049)
Q Consensus 120 l~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 199 (1049)
+..+..++.+.++.+|..|+.-+..+...-...+..+....++-+.+.+.+ ..+ -..|..++.++..... ..
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~-~~~--~~~a~~alVnlsq~~~----l~- 76 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKD-LDP--AEPAATALVNLSQKEE----LR- 76 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccC-ccc--ccHHHHHHHHHHhhHH----HH-
Confidence 456777888888899999887777666553344455556677888888877 444 3445566666654321 11
Q ss_pred HHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 001584 200 FREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIES 236 (1049)
Q Consensus 200 ~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 236 (1049)
..++..++..+...+.+.....+...+-.+.++...
T Consensus 77 -~~ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~~ 112 (353)
T KOG2973|consen 77 -KKLLQDLLKVLMDMLTDPQSPLADLICMLLSNLSRD 112 (353)
T ss_pred -HHHHHHHHHHHHHHhcCcccchHHHHHHHHHHhccC
Confidence 122222444444445454445555666666665543
No 384
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=41.11 E-value=2.3e+02 Score=24.39 Aligned_cols=69 Identities=16% Similarity=0.259 Sum_probs=43.8
Q ss_pred hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHH-HHHHHHhhcCCCHhHHHHHHHHH
Q 001584 416 HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPL-MGKLLAALENSPRNLQETCMSAI 484 (1049)
Q Consensus 416 ~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~l-l~~l~~~l~~~~~~v~~~~~~~l 484 (1049)
+...++..+.+.+....+.-+-.++..+..++++++..-..++... .+.+.......++.+|......+
T Consensus 34 ~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~ 103 (114)
T cd03562 34 HAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLL 103 (114)
T ss_pred HHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4456777777777777777788899999999999865433333222 44444444555666665544433
No 385
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=39.17 E-value=87 Score=21.80 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 001584 74 QLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKY 109 (1049)
Q Consensus 74 ~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~ 109 (1049)
...+++|+.+++.|.+ .++..|..+.-+|+.+.+.
T Consensus 3 ~~~eYLKNvl~~fl~~-~~~~~~~~llpvi~tlL~f 37 (46)
T PF01465_consen 3 INLEYLKNVLLQFLES-REPSEREQLLPVIATLLKF 37 (46)
T ss_dssp HHHHHHHHHHHHHHTT-SS---HHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHCC
Confidence 3568899999999997 5588888888898888764
No 386
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=38.69 E-value=6.6e+02 Score=28.85 Aligned_cols=114 Identities=12% Similarity=0.217 Sum_probs=76.9
Q ss_pred HHHhHHHHHH-HHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh
Q 001584 372 MKEKLESVLH-IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (1049)
Q Consensus 372 ~~~~l~~i~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~ 450 (1049)
+...+..+.. .++....|-++.+|.-+...++..+...+.-+.... .+...-=.|.|.+..||....+.+..++..-
T Consensus 268 ~~d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~--~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~ 345 (740)
T COG5537 268 IRDEIKDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKIL--GLRYNGWSLSDNHEGVRLLVSKILLFLCSRI 345 (740)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhh--cccccccccccchHHHHHHHHHHHHHHHhcC
Confidence 4455666664 556788899999999999999888877654332211 2222233567888899999999998888765
Q ss_pred cc--ccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHH
Q 001584 451 GE--EILPFLDPLMGKLLAALENSPRNLQETCMSAIGSV 487 (1049)
Q Consensus 451 ~~--~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l 487 (1049)
+. .+..+++.+...++........-||..++..+..+
T Consensus 346 p~~d~ir~f~eRFk~rILE~~r~D~d~VRi~sik~l~~l 384 (740)
T COG5537 346 PHTDAIRRFVERFKDRILEFLRTDSDCVRICSIKSLCYL 384 (740)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Confidence 42 34456666666777666555444888777766554
No 387
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=38.17 E-value=7e+02 Score=29.02 Aligned_cols=318 Identities=10% Similarity=0.062 Sum_probs=150.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 001584 682 HEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYM 761 (1049)
Q Consensus 682 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~i~~~g~~~~~~~~ 761 (1049)
..++|.+.++.+..++..+...... ..+...-.+.+..+.+.+.+.+.+... ....+-.+..++-..++..+....
T Consensus 144 ~~~ik~A~~~~l~~lLlPvA~~~~~-evn~P~W~~~v~~i~~~~~~~~~K~kh---w~~afPL~t~lLCvS~~e~F~~~W 219 (552)
T PF14222_consen 144 KSDIKHAYCEVLVELLLPVAATATA-EVNHPKWKEAVETIYPRAAKMMSKPKH---WNVAFPLVTTLLCVSPKEFFLSNW 219 (552)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccc-cccccHHHHHHHHHHHHHHHHHhCcch---hhhHHHHHHHHHhcCcHHHHHHHH
Confidence 4568888999998888765532211 112234556666777777666654222 222344444444333333344444
Q ss_pred H-HHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhHHHHHHHHhHHHHHH-HHhCCChHHHHHHHHHHHHHhhccCC-C
Q 001584 762 S-RLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFA-KSMGPHFAPIFAKLFDPLMKFAKSSR-P 838 (1049)
Q Consensus 762 ~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~~~~~~~~l~~~l~~~l~~~~-~ 838 (1049)
. .+++.+..-++++ +.....++++.+++.... ...++.......++-+.+-..+..+. .
T Consensus 220 ~~~~i~~~~~klKdk------------------~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lfp~~kk~ 281 (552)
T PF14222_consen 220 LPSLIESLISKLKDK------------------ETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLFPKGKKG 281 (552)
T ss_pred HHHHHHHHHhhcCCh------------------hhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHccCCCCc
Confidence 4 3554444444433 234556668888888777 55555444444443333322222221 2
Q ss_pred cccch-hhhHhHHHHHhhcCCchhhcH-hhhHHHHHHh-cC-----CCChHhHHHHHHHHHHHHhhc-CcchhhHHH---
Q 001584 839 LQDRT-MVVATLAEVARDMGSPIAAYV-DRVMPLVLKE-LA-----SPDAMNRRNAAFCVGELCKNG-GESALKYYG--- 906 (1049)
Q Consensus 839 ~~~r~-~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~-l~-----~~~~~vr~~a~~~lg~l~~~~-~~~~~~~~~--- 906 (1049)
+..+- .-+..+.++++..|..-..|. .+++-.+++. .. .-+++-.--++.++-.+.... ..+..|..+
T Consensus 282 ~i~~D~~~~~~lv~ii~~I~~~~~df~~~~iI~~LL~~~~~~s~~~~l~pERm~IgIRA~l~Il~~~e~~e~p~~p~~~~ 361 (552)
T PF14222_consen 282 WIPRDPEPLNPLVQIIRFIGYKHLDFAFRNIIFPLLNVSFNGSSLENLNPERMIIGIRAFLAILSDLEQKEKPPPPPPTS 361 (552)
T ss_pred ccCCChhhhhhHHHHHHhHhhhCcchHHHHHHHHHHccccccccccccChhHHHHHHHHHHHHHHhhccCCCCCCCCCcC
Confidence 11222 556777788877776544453 5544444432 21 113443333333333333221 111110000
Q ss_pred ------------HHHHhhhhhhCCCCCChhHHhhHHHHHHHHHHhCCCCCChhhHHHHHHhhC----C-------CCCcH
Q 001584 907 ------------DILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVL----P-------LKEDF 963 (1049)
Q Consensus 907 ------------~~l~~L~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~l~~~l~~l----p-------~~~d~ 963 (1049)
..-+.+..............+..+.++++|+..+.+.++-..+.+.-...- | ...|.
T Consensus 362 ~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~il~~cD~~~G~~~~~~~~~~~~~~~t~~~~f~f~~~~d~ 441 (552)
T PF14222_consen 362 DPSGNTLRVKYTPSNEYLSNEIAKNSGIREYYEEFCRALGKILRLCDNTFGSQLWLDEKQSSSKPKTPFSSFSFGRNDDM 441 (552)
T ss_pred CCCCcccccccCcccccccchhhccccHHHHHHHHHHHHHHHHHHHHHHhchhhccCcccccCCCCCCcccccccccccc
Confidence 000011111111122234567788889998876544432111111000000 0 01111
Q ss_pred --HhhHHHHHHHHHHHhhCChhhcch--hhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhh
Q 001584 964 --EESMAVYNCISTLVLSSNPQILSL--VPELVNLFAEVVVSPEESSEVKSQVGMAFSHLISLYG 1024 (1049)
Q Consensus 964 --~e~~~~~~~l~~l~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 1024 (1049)
.+ ...+..+...++.-|-.+... ...+++++.....+ .+.+++....+.|+.+....|
T Consensus 442 ~~~~-~~~~~Lf~t~i~aiPrcL~~~i~~~~lielL~R~tvH--vd~~I~~~A~~aLk~la~~~p 503 (552)
T PF14222_consen 442 VTDQ-KPQLDLFRTCIQAIPRCLPSSIPFKSLIELLCRGTVH--VDPNIRESAAQALKRLARDKP 503 (552)
T ss_pred cccc-cchhHHHHHHHHHccccCCCCCcHHHHHHHHhccccc--CCHHHHHHHHHHHHHHHHcCC
Confidence 11 334455555554443223222 44677777666544 567888888889988887764
No 388
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=38.07 E-value=3.3e+02 Score=25.15 Aligned_cols=74 Identities=22% Similarity=0.217 Sum_probs=35.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHhc-CCChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHH
Q 001584 8 LLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRT-AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIES 86 (1049)
Q Consensus 8 ll~~~~s~d~~~r~~a~~~L~~~~~~p~~~~~l~~il~~-~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~ 86 (1049)
+|+.+--.+.+.++++...|... .|-.+...++.+.. -.++.+|++|...|++. +++........|+++
T Consensus 44 ~L~sv~w~~~~~~~e~~~lL~~W--~~~~~~~aL~LL~~~~~~~~vr~yAv~~L~~~--------~~~~l~~ylpQLVQa 113 (152)
T cd00864 44 LLKSVNWNDDEEVSELYQLLKWW--APLSPEDALELLSPKYPDPVVRQYAVRVLESA--------SDDELLLYLPQLVQA 113 (152)
T ss_pred HHHHccCCCHHHHHHHHHHHhcC--CCCCHHHHHHHcCCcCCCHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHH
Confidence 33333334444444444433332 12223334444433 23566777776555442 455555555666666
Q ss_pred HhhcC
Q 001584 87 ITLEH 91 (1049)
Q Consensus 87 l~~e~ 91 (1049)
|.-|+
T Consensus 114 Lkye~ 118 (152)
T cd00864 114 LKYEP 118 (152)
T ss_pred Hhccc
Confidence 66543
No 389
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=37.48 E-value=3.6e+02 Score=25.47 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=18.8
Q ss_pred ChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHhhc
Q 001584 49 TPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLE 90 (1049)
Q Consensus 49 ~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e 90 (1049)
++.||++|...|++. +++........|+|+|.-|
T Consensus 84 d~~VR~yAV~~L~~~--------sd~eL~~yL~QLVQaLKyE 117 (171)
T cd00872 84 DEHVREFAVRCLEKL--------SDDELLQYLLQLVQVLKYE 117 (171)
T ss_pred CHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHHHHcc
Confidence 566666666555442 4455555555555666554
No 390
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=37.47 E-value=1.2e+02 Score=28.52 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=44.7
Q ss_pred cchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhh
Q 001584 117 PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (1049)
Q Consensus 117 ~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~ 196 (1049)
|..+|.++....-.++.....+...+..... ....+.+.++.... ++..||..|++++..+-.
T Consensus 38 p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~-------i~~~~aLeLL~~~f---~d~~VR~yAV~~L~~~sd------- 100 (171)
T cd00872 38 PQALPKLLLSVKWNKRDDVAQMYQLLKRWPK-------LKPEQALELLDCNF---PDEHVREFAVRCLEKLSD------- 100 (171)
T ss_pred cHHHHHHHhhCCCCCHHHHHHHHHHHHCCCC-------CCHHHHHHHCCCcC---CCHHHHHHHHHHHHhCCH-------
Confidence 5667777766655555444444444443321 11233344443332 458899999998865322
Q ss_pred HHHHHhhhHHHHHHHH
Q 001584 197 VVKFREFIPSILNVSR 212 (1049)
Q Consensus 197 ~~~~~~~~~~ll~~l~ 212 (1049)
..+..++|++++++.
T Consensus 101 -~eL~~yL~QLVQaLK 115 (171)
T cd00872 101 -DELLQYLLQLVQVLK 115 (171)
T ss_pred -HHHHHHHHHHHHHHH
Confidence 126778899998864
No 391
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=37.47 E-value=4.7e+02 Score=26.82 Aligned_cols=125 Identities=15% Similarity=0.216 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhccCCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcc-cccHHHHHHHHHHhhCCCCCh
Q 001584 96 RRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF-RPHFADMQALLLKCLQDETSN 174 (1049)
Q Consensus 96 r~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~-~~~~~~l~~~l~~~l~~~~~~ 174 (1049)
...+|..++.++.. ...+.+-..+....+..= ...-..+..++..+.+.+ ..+..+++.++...+.+ ...
T Consensus 132 ~~~~A~~La~~a~~----~~~~~La~il~~ya~~~f----r~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n-~~~ 202 (262)
T PF14225_consen 132 CIEIAEALAQVAEA----QGLPNLARILSSYAKGRF----RDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLEN-GPP 202 (262)
T ss_pred HHHHHHHHHHHHHh----CCCccHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhC-CcH
Confidence 34667788887743 244554444433333221 112233444444444333 35567788888899887 777
Q ss_pred HHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccCC
Q 001584 175 RVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA 238 (1049)
Q Consensus 175 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 238 (1049)
-+|..+++.+..++...+-.. ...+.++..+.+.++.+ ...+|+++|...+...+
T Consensus 203 w~~~~~L~iL~~ll~~~d~~~------~~~~dlispllrlL~t~---~~~eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 203 WLRRKTLQILKVLLPHVDMRS------PHGADLISPLLRLLQTD---LWMEALEVLDEIVTRSG 257 (262)
T ss_pred HHHHHHHHHHHHHhccccCCC------CcchHHHHHHHHHhCCc---cHHHHHHHHHHHHhhcc
Confidence 899999999999998875331 13455566655666553 44566777766655443
No 392
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.02 E-value=1.2e+03 Score=30.67 Aligned_cols=154 Identities=10% Similarity=0.046 Sum_probs=88.9
Q ss_pred HHHHHHHhc-cCCChHHHHHHHHHHHHHHHh--hccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhhhcc
Q 001584 420 VLPCILNAL-EDESDEVKEKSYYALAAFCED--MGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFI 496 (1049)
Q Consensus 420 ll~~l~~~l-~~~~~~v~~~a~~~l~~l~~~--~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~~~~ 496 (1049)
++..+.... .+.+.++|.++++.+..++=. +. ......+++...+.+.+.+.+-.+|+.+..+++.+.......+.
T Consensus 1527 ~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~~ 1605 (1710)
T KOG1851|consen 1527 FLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQFV 1605 (1710)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccccc
Confidence 444444333 344688999888888776533 23 34466778888999999998889999999999999877654444
Q ss_pred ccHHHHHHHHHHHHhccChhhhhhHHHHHHHHHHHHHhhchhccccchHHHHHHHHhccCCCCchhhHHHHHHHHHHHHH
Q 001584 497 PYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGV 576 (1049)
Q Consensus 497 ~~~~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~ 576 (1049)
+ .............+.+ ......|...+|.++-++. -.+...++..+..+- .+..+...+++.+-..+..+-..
T Consensus 1606 ~---~k~d~~~~~~~s~s~~-~i~~HgavlgLgA~VlafP-y~vP~wip~~L~~Ls-~fa~e~~~i~~tvkktvseFrrt 1679 (1710)
T KOG1851|consen 1606 S---DKRDTTSNILQSKSKD-EIKAHGAVLGLGAIVLAFP-YVVPLWIPKPLMNLS-SFARESAAIKQTVKKTVSEFRRT 1679 (1710)
T ss_pred h---HhhhhhhhhhhhcchH-HHHhhhhHHHHHHHHHhcc-ccchhhhHHHHHHHH-hhcCCchHHHHHHHHHHHHHHHH
Confidence 4 1111222222222222 2234456777787776663 233333444443322 22333445666666666655554
Q ss_pred cccC
Q 001584 577 LEDG 580 (1049)
Q Consensus 577 ~~~~ 580 (1049)
..++
T Consensus 1680 h~D~ 1683 (1710)
T KOG1851|consen 1680 HADT 1683 (1710)
T ss_pred hhhh
Confidence 4433
No 393
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=34.08 E-value=8.3e+02 Score=28.67 Aligned_cols=113 Identities=13% Similarity=0.130 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHH-HHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcc-hHHHHHHhccCCCHHHHHHHHHHHHHhhhh
Q 001584 71 LSPQLKQLVKQSLIE-SITLEHSAPVRRASANVVSIIAKYAVPAGEWPD-LLPFLFQFSQSEQEEHREVALILFSSLTET 148 (1049)
Q Consensus 71 ~~~~~~~~i~~~ll~-~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~-ll~~l~~~l~~~~~~~~~~al~~l~~l~~~ 148 (1049)
+++..+..+-..+++ .+. +++-.+|+.+..++-+......+ ..|.. ++..+ ++-.-+. -+..-..+...+..
T Consensus 379 ~~~~lqt~L~hll~~~alF-Dpel~vRr~a~Aal~E~iGR~~s-~a~g~~lIslI-N~~sv~r---~s~csg~~~r~~~~ 452 (993)
T COG5234 379 AIEGLQTNLIHLLLQTALF-DPELNVRRAATAALFEVIGRHAS-IADGLSLISLI-NYVSVTR---ISNCSGDLCRKVAH 452 (993)
T ss_pred cchhHHHHHHHHHHhhhhc-CchhhhhhHHHHHHHHHhccCCC-cccchhhhhhc-cceecch---hhhcchHHHHHhcC
Confidence 456666667777777 555 68899999988888775543333 25543 33332 2221111 11222223333323
Q ss_pred hhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhccc
Q 001584 149 IGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFT 191 (1049)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~ 191 (1049)
.+. +......+-..+.+-+.+ =+++++....-++..++.+.
T Consensus 453 ~~k-~~~CedVF~diLl~Nl~H-~~~~~k~~~~y~l~~liK~~ 493 (993)
T COG5234 453 FPK-FRSCEDVFQDILLTNLQH-WDVKVKQLSAYSLRQLIKYP 493 (993)
T ss_pred ccc-cchHHHHHHHHHHhhhhc-cchhhhhhccccHHHHhcCc
Confidence 331 111111222334444444 57778888888888887655
No 394
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=33.11 E-value=8.5e+02 Score=28.45 Aligned_cols=56 Identities=25% Similarity=0.288 Sum_probs=40.0
Q ss_pred hcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHh
Q 001584 346 CQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAE 407 (1049)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 407 (1049)
+.=.++..|.+.=++++-++-..|.. +++..+.+...|.+..|-..|+.++|-+..
T Consensus 649 l~yge~~iRravPLal~llsvSNPq~------~vlDtLsk~shd~D~eva~naIfamGLiGA 704 (878)
T KOG2005|consen 649 LHYGEPHIRRAVPLALGLLSVSNPQV------NVLDTLSKFSHDGDLEVAMNAIFAMGLIGA 704 (878)
T ss_pred HHcCCHHHHHHHHHHHhhhccCCCcc------hHHHHHHHhccCcchHHHHHHHHHhccccC
Confidence 44467778888888888777654432 567777777788888888888777775543
No 395
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=33.07 E-value=1.9e+02 Score=24.91 Aligned_cols=70 Identities=14% Similarity=0.302 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhccCCCcccchhhhHhHHHHHhhcCCchhhcHhhh-HHHHHHhcCCCChHhHHHHHHHHH
Q 001584 821 IFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRV-MPLVLKELASPDAMNRRNAAFCVG 891 (1049)
Q Consensus 821 ~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~i-~~~l~~~l~~~~~~vr~~a~~~lg 891 (1049)
+-..+...+.+.+....+ ..+..++.++.+++++++.....+.... .+.+.......++++|......++
T Consensus 34 ~a~~iv~~i~~~i~~~~~-~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~ 104 (114)
T cd03562 34 HAKEIVEIIEKHIKKCPP-EQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLN 104 (114)
T ss_pred HHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 334455555556655444 5688999999999999988755554443 455555555556666655444333
No 396
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=32.39 E-value=3.5e+02 Score=23.83 Aligned_cols=72 Identities=8% Similarity=-0.018 Sum_probs=47.5
Q ss_pred HHhhhcCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhc---CCCChhHHHHHHHHHHHhHhhhcHHHHhhhh
Q 001584 342 ASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGAL---RDPEQFVRGAASFALGQFAEYLQPEIVSHYE 418 (1049)
Q Consensus 342 l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l---~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 418 (1049)
+.+..++.+|......+..++..+. +. .....|+..+...| ...++++..-|+..|..+....++.+...+.
T Consensus 8 v~eAT~~d~~gp~~~~l~eIa~~t~---~~--~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~ 82 (125)
T PF01417_consen 8 VREATSNDPWGPPGKLLAEIAQLTY---NS--KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELR 82 (125)
T ss_dssp HHHHTSSSSSS--HHHHHHHHHHTT---SC--HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred HHHHcCCCCCCcCHHHHHHHHHHHh---cc--ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 3445566677554444444444333 22 34668899999998 5678999999999999999988877665543
No 397
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=32.20 E-value=3.5e+02 Score=23.81 Aligned_cols=84 Identities=15% Similarity=0.141 Sum_probs=48.5
Q ss_pred HHHHHHHHcc-hhchHHHHHHHHhhh---cCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhh--cC--CC---
Q 001584 322 VIDTMALNLA-KHVFPPVFEFASVSC---QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGA--LR--DP--- 390 (1049)
Q Consensus 322 ~l~~l~~~~~-~~~~~~ll~~l~~~l---~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~--l~--d~--- 390 (1049)
.+..++...- ..-...++..+...+ ...+|+...-|+..|..+....++.+...+..-...|-.+ +. |+
T Consensus 23 ~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~d~~g~ 102 (125)
T PF01417_consen 23 LLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYVDPKGK 102 (125)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---BBTTST
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeeccCCCCc
Confidence 3444554332 344566777776666 6678999999999999998876655544443333333222 11 22
Q ss_pred --ChhHHHHHHHHHHHh
Q 001584 391 --EQFVRGAASFALGQF 405 (1049)
Q Consensus 391 --~~~vr~~a~~~l~~l 405 (1049)
...||..|-..+.-+
T Consensus 103 d~~~~VR~~A~~i~~lL 119 (125)
T PF01417_consen 103 DQGQNVREKAKEILELL 119 (125)
T ss_dssp BHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 134777776655433
No 398
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=30.80 E-value=7.5e+02 Score=27.16 Aligned_cols=134 Identities=13% Similarity=0.086 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhccC-Ccc-hhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHh
Q 001584 221 DVAVIAFEIFDELIESP-APL-LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMC 298 (1049)
Q Consensus 221 ~~~~~~~~~l~~l~~~~-~~~-~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~ 298 (1049)
.++.++.+.|.++.... ... ....+. .++.++... ...+..+....++..+.+++...+... .....++.++
T Consensus 197 ~vRve~~rlLEq~~~aeN~d~va~~~~~----~Il~lAK~~-e~~e~aR~~~~il~~mFKHSeet~~~L-vaa~~lD~vl 270 (832)
T KOG3678|consen 197 SVRVEAARLLEQILVAENRDRVARIGLG----VILNLAKER-EPVELARSVAGILEHMFKHSEETCQRL-VAAGGLDAVL 270 (832)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHhhccch----hhhhhhhhc-CcHHHHHHHHHHHHHHhhhhHHHHHHH-Hhhcccchhe
Confidence 45777777777664321 111 111111 222233222 244555556666766666554433221 0011223333
Q ss_pred hhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhc----h-HHHHHHHHhhhcCCChhHHhHHHHHHHHHhhc
Q 001584 299 PLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHV----F-PPVFEFASVSCQNASPKYREAAVTAIGIISEG 367 (1049)
Q Consensus 299 ~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~----~-~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~ 367 (1049)
-|....+. ..-+-++-+|+.++-+-+..+ + ...-+++..+..+.+.-.|.-||.++..++..
T Consensus 271 ~~~rRt~P-------~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 271 YWCRRTDP-------ALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN 337 (832)
T ss_pred eecccCCH-------HHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh
Confidence 33333222 334444556666655444221 1 11222233333455777899999998888764
No 399
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=30.76 E-value=1.5e+02 Score=23.14 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhcc-CCChHHHHHHHHHHHHHHHh
Q 001584 395 RGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALE-DESDEVKEKSYYALAAFCED 449 (1049)
Q Consensus 395 r~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~-~~~~~v~~~a~~~l~~l~~~ 449 (1049)
..+|+|++|.++..- .-.+++ ..+++.+++... .+...+|..|..+|+-+...
T Consensus 4 lKaaLWaighIgss~--~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSP--LGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcCh--HHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 468999999998752 222333 258888887665 55678999999999887654
No 400
>PHA02836 putative transmembrane protein; Provisional
Probab=30.75 E-value=53 Score=28.32 Aligned_cols=37 Identities=11% Similarity=0.283 Sum_probs=31.1
Q ss_pred chhhhHhHHHHHhhcCCc-hhhcHhhhHHHHHHhcCCC
Q 001584 842 RTMVVATLAEVARDMGSP-IAAYVDRVMPLVLKELASP 878 (1049)
Q Consensus 842 r~~a~~~l~~l~~~~~~~-~~~~~~~i~~~l~~~l~~~ 878 (1049)
...-++++|.+++.+|.. ...|++.+||.+...+.|.
T Consensus 104 ~LtLiG~~gyise~wGk~k~~kYI~~im~l~fnfl~dn 141 (153)
T PHA02836 104 ALTLIGIIGYISECCGKYGLEKYIQDLLLLLFNFLDDN 141 (153)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHcccc
Confidence 346689999999999987 6679999999999988753
No 401
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=30.58 E-value=4.4e+02 Score=24.38 Aligned_cols=85 Identities=14% Similarity=0.198 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC--------c----HHHHHHHHhc-------CC---Chh-----HH-HHH
Q 001584 5 LELLLIQFLMPDNDARRQAEDQIKRLAKDPQ--------V----VPALVQHLRT-------AK---TPN-----VR-QLA 56 (1049)
Q Consensus 5 l~~ll~~~~s~d~~~r~~a~~~L~~~~~~p~--------~----~~~l~~il~~-------~~---~~~-----~R-~~a 56 (1049)
+.+++..+.|.....|+.|-+.|..+.++|. . ...|+..+.. .. ... .| +.+
T Consensus 6 i~~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~ 85 (155)
T PF11640_consen 6 INSILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSC 85 (155)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHH
Confidence 5678889999999999999999998876542 1 2334443321 00 111 12 344
Q ss_pred HHHHHHhhhhhccCCCHHHHHHHHHHHHHHHhh
Q 001584 57 AVLLRKKITGHWAKLSPQLKQLVKQSLIESITL 89 (1049)
Q Consensus 57 ~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~ 89 (1049)
+..||-.+...-..+..-....+...+.+.|..
T Consensus 86 a~~lR~~ve~~~~~~k~kt~~~Ll~hI~~~l~~ 118 (155)
T PF11640_consen 86 ASALRLFVEKSNSRLKRKTVKALLDHITDLLPD 118 (155)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHhhC
Confidence 555666665555555555556666666666664
No 402
>PHA01351 putative minor structural protein
Probab=30.09 E-value=6.2e+02 Score=29.37 Aligned_cols=14 Identities=29% Similarity=0.228 Sum_probs=8.5
Q ss_pred HHHHHhhCCCCCcH
Q 001584 950 LPVLLKVLPLKEDF 963 (1049)
Q Consensus 950 l~~~l~~lp~~~d~ 963 (1049)
+..|-++||..+|-
T Consensus 862 l~iw~k~lpsls~i 875 (1070)
T PHA01351 862 LDIWRKHLPSLSII 875 (1070)
T ss_pred HHHHHHhCCcHHHH
Confidence 44577777766553
No 403
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=30.01 E-value=3.7e+02 Score=23.44 Aligned_cols=61 Identities=11% Similarity=0.203 Sum_probs=38.0
Q ss_pred HHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhcc
Q 001584 383 VLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE 452 (1049)
Q Consensus 383 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~ 452 (1049)
.++.|......++..+.+++...- +...++..+.+.+....+.-+...+..+..++.++..
T Consensus 5 ~L~~L~~s~~~I~~lt~~~~~~~~---------~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~ 65 (121)
T smart00582 5 KLESLNNSQESIQTLTKWAIEHAS---------HAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKR 65 (121)
T ss_pred HHHhccccHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhh
Confidence 344455555667777777665332 2234666666666665555666788888888887743
No 404
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=29.40 E-value=9.6e+02 Score=27.97 Aligned_cols=201 Identities=14% Similarity=0.231 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccc-cccchHHHHHHHHHhhc-
Q 001584 393 FVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE-ILPFLDPLMGKLLAALE- 470 (1049)
Q Consensus 393 ~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~-l~~~~~~ll~~l~~~l~- 470 (1049)
.+-......+.+++..+. .+...+..++..++..=...+..+|..|.-++..++...... +.+.+...+-.++.--.
T Consensus 257 e~~~~~L~~l~~l~~~~~-~f~k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~ 335 (661)
T KOG2256|consen 257 EVLAFTLRHLTVLVPFLA-TFPKLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKF 335 (661)
T ss_pred HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCC
Confidence 344444444555544442 233344445555544334446678888898898888776432 33434333333332211
Q ss_pred -CCC-----HhHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhccChhhhhh-----HHHHHHHH-HHHHHhhc-h
Q 001584 471 -NSP-----RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRS-----RARATELL-GLVAESVG-R 537 (1049)
Q Consensus 471 -~~~-----~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----r~~a~~~l-~~l~~~~~-~ 537 (1049)
..+ ..++..+.+.++.=....-..---|+.++--.|++.+...+.+.... -..++... ..|+...| .
T Consensus 336 ~~~~tl~~i~Fl~~slvEL~~ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~ 415 (661)
T KOG2256|consen 336 VTVNTLPLINFLQNSLVELLGLDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSA 415 (661)
T ss_pred CCCcccchhHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 111 12333333333321111111112355666667777776554332220 01122222 22231333 4
Q ss_pred hccccchHHHHHHHHhccC----CCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhh
Q 001584 538 ARMEPILPPFVEAAISGFG----LEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSS 595 (1049)
Q Consensus 538 ~~~~~~~~~i~~~l~~~l~----~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~ 595 (1049)
....|.+.++++.++..+. ...-.+|-.++..+.+++...| .|-|.+|.++..+-..
T Consensus 416 s~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ssg-~fIPi~~ll~Eml~~~ 476 (661)
T KOG2256|consen 416 SQLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSSG-TFIPLSPLLVEMLKSV 476 (661)
T ss_pred hhhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhcC-ceeecHHHHHHHHHHh
Confidence 4577788888887776654 2245689899999999998776 4666666665555443
No 405
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=29.26 E-value=2e+02 Score=27.03 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=24.1
Q ss_pred CChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHH
Q 001584 172 TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSR 212 (1049)
Q Consensus 172 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 212 (1049)
++..||..|+++|..+-. ..+..++|++++++.
T Consensus 90 ~~~~VR~yAV~~L~~~sd--------~eL~~yL~QLVQaLK 122 (166)
T cd00870 90 TNPVVRKYAVSRLKLASD--------EELLLYLLQLVQALK 122 (166)
T ss_pred CCHHHHHHHHHHHHhCCH--------HHHHHHHHHHHHHHH
Confidence 458899999999875221 226778899998864
No 406
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=28.89 E-value=1e+03 Score=27.96 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHh
Q 001584 245 VKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAK 278 (1049)
Q Consensus 245 ~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~ 278 (1049)
...++..++..+.+++....+|..|...+.+++.
T Consensus 344 ~~~Fl~~L~~~~~~~~~~~~~R~~A~~YlaSfla 377 (563)
T PF05327_consen 344 ADAFLSFLWKIAFDPNQPPVTRQAAAAYLASFLA 377 (563)
T ss_dssp HHHHHHHHHHHHH-SSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 3456677777777777788889999998888864
No 407
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=28.86 E-value=4.4e+02 Score=23.85 Aligned_cols=80 Identities=18% Similarity=0.257 Sum_probs=53.8
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhh-h--cccc
Q 001584 422 PCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ-A--FIPY 498 (1049)
Q Consensus 422 ~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~~-~--~~~~ 498 (1049)
..+++.|+.+...++.++..||.. . ..-+.+++.++..+.+.+-..|...+..+..++..... . ..+|
T Consensus 11 ~~~L~~L~aS~qSi~kaa~fAlk~--~-------~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~~Y 81 (139)
T PF12243_consen 11 TQLLRRLNASQQSIQKAAQFALKN--R-------DMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNYPY 81 (139)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHc--c-------ccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccchh
Confidence 344556665555667777777654 2 23457888888889888889999999999999887643 2 4556
Q ss_pred HHHHHHHHHHHH
Q 001584 499 AERVLELLKIFM 510 (1049)
Q Consensus 499 ~~~~~~~l~~~l 510 (1049)
...+-.-|..++
T Consensus 82 v~~l~~dL~~Iv 93 (139)
T PF12243_consen 82 VSMLQRDLPRIV 93 (139)
T ss_pred HHHHHHHHHHHH
Confidence 555444444444
No 408
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=28.76 E-value=5.4e+02 Score=24.86 Aligned_cols=153 Identities=17% Similarity=0.197 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCC-CCCcchHHHHHHhccCCCHH--HHHHHHHHHHHhhhhhh
Q 001584 74 QLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA-GEWPDLLPFLFQFSQSEQEE--HREVALILFSSLTETIG 150 (1049)
Q Consensus 74 ~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~-~~w~~ll~~l~~~l~~~~~~--~~~~al~~l~~l~~~~~ 150 (1049)
+....+...+++... |.=..||..++.++..+.....+. ...| -.+.+...+..+... ....+-.+|..++.-..
T Consensus 3 ~~~~~~~~~llrqa~-EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~ 80 (193)
T PF12612_consen 3 ELVQQIIGGLLRQAA-EKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD 80 (193)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc
Confidence 444555555555555 677899999999999998544331 1122 234555544332211 01112233333332211
Q ss_pred hcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 001584 151 QTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIF 230 (1049)
Q Consensus 151 ~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l 230 (1049)
+..+...++.-+...... .+..+...+..+|..++...... ......++..++..+.... .++.+..-.++++
T Consensus 81 --~~~y~~~ll~Glv~S~G~-~tesl~~~s~~AL~~~~~~~~~~--~~~~~~v~~~l~~il~~~~--~~dRv~vP~l~tl 153 (193)
T PF12612_consen 81 --LPEYRYSLLSGLVVSAGG-LTESLVRASSAALLSYLRELSDS--PEELEQVLSDLLSILKENL--RNDRVVVPLLKTL 153 (193)
T ss_pred --cHHHHHHHHhHHHhcCCC-CchhHHHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHhC--CCCCeeecHHHHH
Confidence 112333344444444444 55667777777777776532111 1223334444444433221 2233334445555
Q ss_pred HHHhc
Q 001584 231 DELIE 235 (1049)
Q Consensus 231 ~~l~~ 235 (1049)
..+.+
T Consensus 154 ~~Ll~ 158 (193)
T PF12612_consen 154 DFLLS 158 (193)
T ss_pred HHHHh
Confidence 54443
No 409
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=28.59 E-value=1.3e+03 Score=29.09 Aligned_cols=94 Identities=15% Similarity=0.207 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhHhhhcHHHHhhhhhHHHHH-HHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCC
Q 001584 395 RGAASFALGQFAEYLQPEIVSHYESVLPCI-LNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSP 473 (1049)
Q Consensus 395 r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l-~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~ 473 (1049)
|...+.............+...+..++..+ +..-.|-.+.+|..|+..|+..+..+|+.+.. ...+..+.=.|.+.+
T Consensus 262 rle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~--dsYLKYiGWtLsDk~ 339 (1048)
T KOG2011|consen 262 RLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLS--DSYLKYIGWTLSDKN 339 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhc--chHHHHhcceeecCc
Confidence 344444333333333333333444444333 34556888999999999999999998865321 122233333467888
Q ss_pred HhHHHHHHHHHHHHHHH
Q 001584 474 RNLQETCMSAIGSVAAA 490 (1049)
Q Consensus 474 ~~v~~~~~~~l~~l~~~ 490 (1049)
..||..++.++-.+...
T Consensus 340 ~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 340 GTVRLRCLKALIKLYEK 356 (1048)
T ss_pred cHHHHHHHHHHHHHHhc
Confidence 99999999999988765
No 410
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=27.39 E-value=6.6e+02 Score=25.37 Aligned_cols=93 Identities=11% Similarity=0.209 Sum_probs=56.8
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhh-------------------------HHHHHhhhHHHHHHHHHH
Q 001584 160 MQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE-------------------------VVKFREFIPSILNVSRQC 214 (1049)
Q Consensus 160 l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~-------------------------~~~~~~~~~~ll~~l~~~ 214 (1049)
+-..+.+.+.+ .++.||..+++.+..++........ ...++.--..++..+...
T Consensus 44 lK~~Il~~~~~-~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~ 122 (239)
T PF11935_consen 44 LKDRILSLWDS-ENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDV 122 (239)
T ss_dssp HHHHHHHGGGS-SSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 44555666666 7888999999999887643321100 001111112344444444
Q ss_pred hhcC--CHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHH
Q 001584 215 LASG--EEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSL 253 (1049)
Q Consensus 215 l~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~ 253 (1049)
+.++ +......++.+|..++...|.++...++.+..+-.
T Consensus 123 l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~~~~ 163 (239)
T PF11935_consen 123 LQSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLSFNP 163 (239)
T ss_dssp HC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHH
T ss_pred HhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCc
Confidence 4443 45677888999999999999988887777766543
No 411
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=27.00 E-value=1.4e+03 Score=29.21 Aligned_cols=56 Identities=9% Similarity=0.110 Sum_probs=45.6
Q ss_pred cchhhhHhHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhh
Q 001584 841 DRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKN 896 (1049)
Q Consensus 841 ~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~lg~l~~~ 896 (1049)
-.+.|+-.|++++-.......+++|.++..++-.+....+-|+..|-..|..++..
T Consensus 932 ~~qlalifL~dl~~~~~~~~~~~lP~LLH~~~~~lDH~~~~V~e~a~~lL~~Li~~ 987 (1120)
T PF14228_consen 932 RGQLALIFLVDLAVEPDEDLREHLPLLLHVIFVLLDHYTPLVQEQARELLVNLIHS 987 (1120)
T ss_pred HHHHHHHHHHHHHcCCcchHhhhhHHHHHHHHHcccCCChHHHHHHHHHHHHHHHH
Confidence 34578888999887666667889999999998888888888999988888877654
No 412
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=26.69 E-value=8.1e+02 Score=26.22 Aligned_cols=161 Identities=13% Similarity=0.123 Sum_probs=80.4
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHhh----cCC---------HHHHHHHH
Q 001584 161 QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLA----SGE---------EDVAVIAF 227 (1049)
Q Consensus 161 ~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~----~~~---------~~~~~~~~ 227 (1049)
+..+.+.|+. ....+...+++.|..++.+.+......-+ ..+..-+..+.+++. ..+ +++|...+
T Consensus 58 ~k~lyr~L~~-~~~~~~~~~LrLL~~iv~f~~g~~a~~v~-~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI 135 (330)
T PF11707_consen 58 LKLLYRSLSS-SKPSLTNPALRLLTAIVSFDGGALAREVL-RSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFI 135 (330)
T ss_pred HHHHHHHhCc-CcHHHHHHHHHHHHHHHccCCHHHHHHHH-HhcCCchhhHHHHhccccccccccccccccCcCHHHHHH
Confidence 5677788887 66777779999999999876432111111 111111111222211 111 27888889
Q ss_pred HHHHHHhccCCcchhhhHH---HHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhh--hhcC-ChHHHHHHHhhhh
Q 001584 228 EIFDELIESPAPLLGDSVK---SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSL--KKHK-LVIPILQVMCPLL 301 (1049)
Q Consensus 228 ~~l~~l~~~~~~~~~~~~~---~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~--~~~~-~~~~il~~l~~~l 301 (1049)
+.+..+....++.....+- .++..++.-+..+ +.++-...++++..-+-..+..- .+.. +-+..+..+..+.
T Consensus 136 ~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D--~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly 213 (330)
T PF11707_consen 136 RFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD--PPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLY 213 (330)
T ss_pred HHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCC--CHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHh
Confidence 9999888876554433221 1233333333322 44555555555543221111111 1111 2234555555543
Q ss_pred ccCCCCCCCCCCcHHHHHHHHHHHHHH
Q 001584 302 AESNEAGEDDDLAPDRAAAEVIDTMAL 328 (1049)
Q Consensus 302 ~~~~~~~~d~~~~~~~~a~~~l~~l~~ 328 (1049)
...++ ++...++..+-+.+-.++.
T Consensus 214 ~~~~~---~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 214 SRDGE---DEKSSVADLVHEFLLALCT 237 (330)
T ss_pred cccCC---cccchHHHHHHHHHHHHhc
Confidence 33322 2334667777777777664
No 413
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=26.51 E-value=1.1e+02 Score=29.65 Aligned_cols=82 Identities=18% Similarity=0.176 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhccC---CcchhhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHhhhHhhhhhcCChHHHHHHHhhh
Q 001584 224 VIAFEIFDELIESP---APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPL 300 (1049)
Q Consensus 224 ~~~~~~l~~l~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~ 300 (1049)
..++..|.-++.+. ..|++.+++-++-..+...+....-+..|..++-++..++++....+.+.-.-..+++.++.+
T Consensus 118 cnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 34555555555443 346667777655544444444445678899999999999987655444422224577777777
Q ss_pred hccCC
Q 001584 301 LAESN 305 (1049)
Q Consensus 301 l~~~~ 305 (1049)
|....
T Consensus 198 me~gS 202 (315)
T COG5209 198 MELGS 202 (315)
T ss_pred HHhhh
Confidence 75543
No 414
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=26.20 E-value=3.8e+02 Score=26.59 Aligned_cols=85 Identities=11% Similarity=0.110 Sum_probs=57.9
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHHhhccc-cccchHHHHHHHHHhhc-CCCHhHHHHHHHHHHHHHHHhhh--hcccc
Q 001584 423 CILNALEDESDEVKEKSYYALAAFCEDMGEE-ILPFLDPLMGKLLAALE-NSPRNLQETCMSAIGSVAAAAEQ--AFIPY 498 (1049)
Q Consensus 423 ~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~-l~~~~~~ll~~l~~~l~-~~~~~v~~~~~~~l~~l~~~~~~--~~~~~ 498 (1049)
.+.+.|.+.++.+|.+|...|..++..-... -..-+..+...|.-++= ++.+-+++....-|+.+....+. ....|
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~~~~~~f 83 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSEKAALLF 83 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcChHHHHHH
Confidence 3567788889999999999999998876432 12334566666666543 45577899999999988877653 33345
Q ss_pred HHHHHHHHH
Q 001584 499 AERVLELLK 507 (1049)
Q Consensus 499 ~~~~~~~l~ 507 (1049)
+..++..+.
T Consensus 84 ~~~f~~tm~ 92 (217)
T PF05997_consen 84 LKAFWETMR 92 (217)
T ss_pred HHHHHHHHH
Confidence 554444443
No 415
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=25.62 E-value=5.5e+02 Score=23.89 Aligned_cols=105 Identities=21% Similarity=0.233 Sum_probs=0.0
Q ss_pred cchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhh
Q 001584 117 PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (1049)
Q Consensus 117 ~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~ 196 (1049)
++++..+.+.+.+........-..+|+.++...+-.+.++...+...+ ..+.. -..++...-+.|+.-++...
T Consensus 54 ~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~~~~l~~~l-d~l~~-lp~~~a~~ll~Al~PLi~~s----- 126 (158)
T PF14676_consen 54 SEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLECSSKLKELL-DYLSF-LPGDVAIGLLRALLPLIKFS----- 126 (158)
T ss_dssp HHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S-HHHHGGG-GGTTT-S-HHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHHHHHHHHHH-HHHHh-CCHHHHHHHHHHHHHHHhcC-----
Q ss_pred HHHHHhhhHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 001584 197 VVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDE 232 (1049)
Q Consensus 197 ~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~ 232 (1049)
..+-..++-++.+.+-+.+.+.|..|..-+.+
T Consensus 127 ----~~lrd~lilvLRKamf~r~~~~R~~Av~Gfl~ 158 (158)
T PF14676_consen 127 ----PSLRDSLILVLRKAMFSRELDARQMAVNGFLQ 158 (158)
T ss_dssp ----HHHHHHHHHHHHHHTT-SSHHHHHHHHHHHH-
T ss_pred ----HHHHHHHHHHHHHHHccccHHHHHHHHHHhcC
No 416
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=25.57 E-value=3.2e+02 Score=23.11 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=38.4
Q ss_pred HhHHHHHHHHHhhcChHH---HHHhHHHHHHHHHhhcC--CCChhHHHHHHHHHHHhHhhhcH
Q 001584 354 REAAVTAIGIISEGCAEW---MKEKLESVLHIVLGALR--DPEQFVRGAASFALGQFAEYLQP 411 (1049)
Q Consensus 354 r~~al~~l~~i~~~~~~~---~~~~l~~i~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~ 411 (1049)
|...+..++.++..++.. +... .-+|.++++.. |.+|.+|.-|.+|+..+++...+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~--~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVREL--GGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHc--CChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHH
Confidence 445566777877765432 2221 22666666543 67999999999999999998743
No 417
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=24.74 E-value=5.9e+02 Score=23.94 Aligned_cols=66 Identities=21% Similarity=0.248 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHHhcCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHhhcC
Q 001584 16 DNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEH 91 (1049)
Q Consensus 16 d~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~-~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~ 91 (1049)
+....+++.+.|..+. |-.+...++++... .++.||++|...|++. +++........|+++|.-|.
T Consensus 59 ~~~e~~e~~~lL~~W~--~i~~~~aLeLL~~~f~~~~VR~yAV~~L~~~--------sd~eL~~yL~QLVQaLKyE~ 125 (166)
T cd00870 59 DEQEVKQALELMPKWA--KIDIEDALELLSPYFTNPVVRKYAVSRLKLA--------SDEELLLYLLQLVQALKYEN 125 (166)
T ss_pred CHHHHHHHHHHHhcCC--CCCHHHHHHHcCccCCCHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHHHHhcc
Confidence 3344444544444432 22234445555432 4677788777766653 55666666666777777654
No 418
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=24.72 E-value=5.1e+02 Score=23.22 Aligned_cols=125 Identities=9% Similarity=0.041 Sum_probs=65.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCCCCCcc-----hHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccc
Q 001584 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPD-----LLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRP 155 (1049)
Q Consensus 81 ~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~-----ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~ 155 (1049)
+.|..-+...++..-+..+..-++.++ +.--.|.- .+..+...+..++..+.+-++..+..++..... ..
T Consensus 19 q~LV~efq~tt~~eakeqv~ANLANFA---YDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n--~~ 93 (173)
T KOG4646|consen 19 QHLVDEFQTTTNIEAKEQVTANLANFA---YDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN--AK 93 (173)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhc---cCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHH--HH
Confidence 344444444455555555443344443 22235644 466777788778877888777666666533221 12
Q ss_pred cHHH--HHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHHHHh
Q 001584 156 HFAD--MQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCL 215 (1049)
Q Consensus 156 ~~~~--l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l 215 (1049)
++.+ -+|++..++++ +...+-..|+.++..+...-... . -.-+-|.++..+.+.-
T Consensus 94 ~I~ea~g~plii~~lss-p~e~tv~sa~~~l~~l~~~~Rt~--r--~ell~p~Vv~~v~r~~ 150 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSS-PPEITVHSAALFLQLLEFGERTE--R--DELLSPAVVRTVQRWR 150 (173)
T ss_pred HHHHhcCCceEEeecCC-ChHHHHHHHHHHHHHhcCcccch--h--HHhccHHHHHHHHHHH
Confidence 2222 24667777877 65556666665555444332211 1 0122366776665543
No 419
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=24.54 E-value=6.3e+02 Score=24.23 Aligned_cols=34 Identities=26% Similarity=0.270 Sum_probs=16.3
Q ss_pred ChhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHhhc
Q 001584 49 TPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLE 90 (1049)
Q Consensus 49 ~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e 90 (1049)
++.+|++|...|++. +++........|+++|.-|
T Consensus 89 ~~~Vr~yAV~~L~~~--------~d~~l~~yLpQLVQaLr~E 122 (184)
T smart00145 89 DPFVRAYAVERLESA--------SDEELLLYLLQLVQALKYE 122 (184)
T ss_pred CHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHHHHcc
Confidence 455555555444332 4444444444555555443
No 420
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=24.09 E-value=1.8e+02 Score=20.37 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Q 001584 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYA 110 (1049)
Q Consensus 75 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~ 110 (1049)
..+++|+.+++.|.+ .+.. |..+.-+++.+....
T Consensus 3 n~eYLKNVll~fl~~-~e~~-r~~ll~vi~tlL~fs 36 (46)
T smart00755 3 NFEYLKNVLLQFLTL-RESE-RETLLKVISTVLQLS 36 (46)
T ss_pred cHHHHHHHHHHHhcc-Ccch-HHHHHHHHHHHhCCC
Confidence 357899999999986 3444 888888888877643
No 421
>PF04699 P16-Arc: ARP2/3 complex 16 kDa subunit (p16-Arc); InterPro: IPR006789 The Arp2/3 protein complex has been implicated in the control of actin polymerisation. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. The precise function of p16-Arc is currently unknown. Its structure consists of a single domain containing a bundle of seven alpha helices [, ].; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_G 1TYQ_G 1U2V_G 2P9U_G 2P9L_G 1K8K_G 3DXM_G 2P9N_G 3DXK_G 2P9I_G ....
Probab=24.00 E-value=2.6e+02 Score=25.75 Aligned_cols=57 Identities=9% Similarity=0.152 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCCC--ChHHHHHHHHHHHHHHHHhh-hhHHHHHhcCCHHHHHHHHhhc
Q 001584 990 ELVNLFAEVVVSPEE--SSEVKSQVGMAFSHLISLYG-QQMQPLLSNLSPAHATALAAFA 1046 (1049)
Q Consensus 990 ~i~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~l~~~~~~~l~~~~ 1046 (1049)
+....+..++.++.. .+.++......+.....++. .++..++++|+++++..|-+|+
T Consensus 51 ~~~~ALk~aL~npP~~~k~~~K~~~~~~Vl~vL~s~k~sdI~~~v~~L~~~~~D~LMKYi 110 (152)
T PF04699_consen 51 DNEEALKAALENPPYGSKDAVKDRALQLVLEVLTSIKSSDIENAVKSLDSDQQDILMKYI 110 (152)
T ss_dssp -HHHHHHHHTSS--TT-S-HHHHHHHHHHHHHHHCS-GGGHHHHHCCS-HHHHHHHHHHH
T ss_pred CHHHHHHHhccCCCcCCCcchHHHHHHHHHHHHHHccHHHHHHHHHhCCHHHHhHHHHHH
Confidence 556677777776432 12566655555555444554 5799999999999999999885
No 422
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=23.96 E-value=1.1e+03 Score=26.67 Aligned_cols=317 Identities=11% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhcccccHHHHHHHHHHhh---------CCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHH
Q 001584 138 ALILFSSLTETIGQTFRPHFADMQALLLKCL---------QDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSIL 208 (1049)
Q Consensus 138 al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l---------~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll 208 (1049)
++.++..+.......-.-...+.+..+.+.. ....++.+...|++||++++-..+.-...-.-..+.+.++
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Q ss_pred HHHHHHhhc-CCHHHHHHHHHHHHHHhccCCcchhhhHHH------HHHHHHHhhhCCCCChHH-----------HHHHH
Q 001584 209 NVSRQCLAS-GEEDVAVIAFEIFDELIESPAPLLGDSVKS------IVHFSLEVSSSHNLEPNT-----------RHQAI 270 (1049)
Q Consensus 209 ~~l~~~l~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~------l~~~l~~~~~~~~~~~~~-----------r~~a~ 270 (1049)
..+...... .+.+...-..+++--+....+......+.+ +...+-..+......... -..++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Q ss_pred HHHHHHHhhhHhhh--hhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcC
Q 001584 271 QIISWLAKYKYNSL--KKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQN 348 (1049)
Q Consensus 271 ~~l~~l~~~~~~~~--~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~ 348 (1049)
.++..+..+.+... ...+.+..++..+..++ .....+..-..+...+..+|..+--.....++..-...=......
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l--~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~ 238 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLL--PPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEG 238 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHh--ccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCC
Q ss_pred CChhHHhHHHHHH-HHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHh
Q 001584 349 ASPKYREAAVTAI-GIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNA 427 (1049)
Q Consensus 349 ~~~~~r~~al~~l-~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~ 427 (1049)
.+...-...+..| ..+.......+...+..++..+.+........-+..-.+.|=..-..-.+ -..-..+-..|++.
T Consensus 239 ~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~--~e~~~tL~~rLlrL 316 (446)
T PF10165_consen 239 DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKP--PEKGDTLRSRLLRL 316 (446)
T ss_pred CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccC--CCCCcchHHHHHHH
Q ss_pred ccCCChHHHHHHHHHHHHHHHhhccccccch
Q 001584 428 LEDESDEVKEKSYYALAAFCEDMGEEILPFL 458 (1049)
Q Consensus 428 l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~ 458 (1049)
+..+.+.++..+...|-.+++.-...+..|.
T Consensus 317 mt~~~~~~k~~vaellf~Lc~~d~~~~v~~~ 347 (446)
T PF10165_consen 317 MTSPDPQLKDAVAELLFVLCKEDASRFVKYV 347 (446)
T ss_pred hCCCCchHHHHHHHHHHHHHhhhHHHHHHHc
No 423
>COG5221 DOP1 Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=23.85 E-value=1.5e+03 Score=28.37 Aligned_cols=81 Identities=11% Similarity=0.080 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcc--hhchHHHHHHHHhhhcCCChhHHhHHHHHHHHHhhcCh------HHHHHhHHHHHHHHHhhcCCC
Q 001584 319 AAEVIDTMALNLA--KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA------EWMKEKLESVLHIVLGALRDP 390 (1049)
Q Consensus 319 a~~~l~~l~~~~~--~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~i~~~~~------~~~~~~l~~i~~~l~~~l~d~ 390 (1049)
....+..+.+.+. +-.|..+...+. .+...|-+++..+..-..+.. ..+.++-.-++..+..++.|.
T Consensus 166 ~~hLi~tl~k~L~d~~~fw~~~w~ill-----~~~~~R~g~l~~l~reeNNdsh~d~~~rlI~p~~gL~VR~l~a~l~dn 240 (1618)
T COG5221 166 RAHLIITLFKSLIDPDVFWSSMWGILL-----NDERLRTGVLNSLMREENNDSHMDWSERLILPHAGLMVRALCAGLGDN 240 (1618)
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh-----cCccccchHHHHHHHHhcCcchhchhhhccCCCcchhHHHHHhhcCCC
Confidence 4456666666655 333455554443 234456666655555333211 113344445566677777776
Q ss_pred ChhHHHHHHHHHHH
Q 001584 391 EQFVRGAASFALGQ 404 (1049)
Q Consensus 391 ~~~vr~~a~~~l~~ 404 (1049)
+..|+..++.+|-.
T Consensus 241 diLV~R~~lDlLl~ 254 (1618)
T COG5221 241 DILVVRNCLDLLLF 254 (1618)
T ss_pred ceeeehhHHHHHHH
Confidence 66666666665544
No 424
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=23.80 E-value=1.1e+03 Score=26.74 Aligned_cols=74 Identities=14% Similarity=0.218 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhhhhhccCCC--HHHHHHHHHH---HHHHHhhcCCHHHHHHHHHHHHHHHhccC
Q 001584 37 VPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLS--PQLKQLVKQS---LIESITLEHSAPVRRASANVVSIIAKYAV 111 (1049)
Q Consensus 37 ~~~l~~il~~~~~~~~R~~a~~~l~~~i~~~w~~~~--~~~~~~i~~~---ll~~l~~e~~~~vr~~~~~~l~~i~~~~~ 111 (1049)
+..+.+.++ ++++.+...+...|+..++..-+... +.-...++.. +++...+=.+++-++.+|++++.++....
T Consensus 49 LellVeriq-d~d~~l~~~sLn~LkeviksStSsmtavpkplkfLrp~y~dl~~iydkw~~~n~K~~LaDilS~l~m~ys 127 (881)
T COG5110 49 LELLVERIQ-DPDIDLQNNSLNMLKEVIKSSTSSMTAVPKPLKFLRPNYLDLLEIYDKWLEGNKKRWLADILSALCMVYS 127 (881)
T ss_pred HHHHHHHhh-CCChHHHHHHHHHHHHHHhccccccccCCchhhhcCCCcchHHHHHhhccCcchhhHHHHHHHHHeeecc
Confidence 566677665 66888888899999988876444332 1222344443 33333334667888999999999886543
No 425
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=23.65 E-value=3.1e+02 Score=26.29 Aligned_cols=78 Identities=17% Similarity=0.147 Sum_probs=42.6
Q ss_pred CcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChh
Q 001584 116 WPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA 195 (1049)
Q Consensus 116 w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~ 195 (1049)
-|+.+|.++....=.++.....+...+..... ....+.+.++.... +++.||..|++.|..+-.
T Consensus 42 ~p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~-------~~~~~aL~LL~~~~---~~~~Vr~yAV~~L~~~~d------ 105 (184)
T smart00145 42 NPKALPKFLLSVNWSDADEVAQALSLLKKWAP-------LDPEDALELLSPKF---PDPFVRAYAVERLESASD------ 105 (184)
T ss_pred ChHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC-------CCHHHHHHHhCccC---CCHHHHHHHHHHHHhCCH------
Confidence 35566666655443444433334444433221 12233444444433 357899999998854221
Q ss_pred hHHHHHhhhHHHHHHH
Q 001584 196 EVVKFREFIPSILNVS 211 (1049)
Q Consensus 196 ~~~~~~~~~~~ll~~l 211 (1049)
..+..++|++++++
T Consensus 106 --~~l~~yLpQLVQaL 119 (184)
T smart00145 106 --EELLLYLLQLVQAL 119 (184)
T ss_pred --HHHHHHHHHHHHHH
Confidence 12677899999986
No 426
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=23.15 E-value=1.2e+03 Score=27.13 Aligned_cols=184 Identities=10% Similarity=0.111 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhh
Q 001584 717 ILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHD 796 (1049)
Q Consensus 717 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1049)
++..++...+..|... +..++..++-++..++...+..++.+.+...+-..+ .+ |+....++ -+.-
T Consensus 279 ~lk~liK~~V~vWstg-e~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv---~n---sk~~~~~t-------l~~i 344 (661)
T KOG2256|consen 279 LLKKLIKAVVHVWSTG-EESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFV---RN---SKFVTVNT-------LPLI 344 (661)
T ss_pred HHHHHHHHHheeeccC-CcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---Hh---CCCCCCcc-------cchh
Confidence 3344444444445444 555666777788888877775555444433332222 21 11110000 1122
Q ss_pred HHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhccCCCcccc-------hhhhHhHHHHHh-hcCC--chhhcHhh
Q 001584 797 EVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDR-------TMVVATLAEVAR-DMGS--PIAAYVDR 866 (1049)
Q Consensus 797 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r-------~~a~~~l~~l~~-~~~~--~~~~~~~~ 866 (1049)
..+..++.++++.=....-....-|+.++--++-+.+...+....+ ..++..+..++. ..|. .+.|.+..
T Consensus 345 ~Fl~~slvEL~~ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYp 424 (661)
T KOG2256|consen 345 NFLQNSLVELLGLDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYP 424 (661)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhH
Confidence 2333344444432111111223356677766666666544332211 134555555554 3232 25555555
Q ss_pred hHHHHHHhcC----CCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhh
Q 001584 867 VMPLVLKELA----SPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPL 915 (1049)
Q Consensus 867 i~~~l~~~l~----~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~ 915 (1049)
+++.++.+++ ......|-.++..|-.++.+.|- |-|.++.+++.|...
T Consensus 425 LvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ssg~-fIPi~~ll~Eml~~~ 476 (661)
T KOG2256|consen 425 LVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSSGT-FIPLSPLLVEMLKSV 476 (661)
T ss_pred HHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhcCc-eeecHHHHHHHHHHh
Confidence 5665555544 23456898899999999888775 445555555544433
No 427
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=23.10 E-value=1e+03 Score=26.04 Aligned_cols=71 Identities=14% Similarity=0.246 Sum_probs=52.1
Q ss_pred HHHHHHHhhchhccccchHHHHHHHHhccCCCCchhhHHHHHHHHHH--HHHcccCccCchhhhhHHHHhhcc
Q 001584 527 LLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNI--AGVLEDGFAQYLPLVVPLAFSSCN 597 (1049)
Q Consensus 527 ~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l--~~~~~~~~~~~l~~i~~~ll~~~~ 597 (1049)
-+..+...+.+..|.....++...+..++++++..+-+.++..|.+= .......-.-++|.+.|.|....+
T Consensus 322 ElEEILe~iep~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk 394 (457)
T KOG2085|consen 322 ELEEILEVIEPSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSK 394 (457)
T ss_pred hHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHH
Confidence 34445555556667777778888888999999999998888877653 555566777778888888886553
No 428
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=23.07 E-value=1.7e+03 Score=28.64 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCCCCCChhHHhhHHHHHHHHHHh
Q 001584 882 NRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMV 939 (1049)
Q Consensus 882 vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~a~~~l~~i~~~ 939 (1049)
--+-|+..|++++....+.+.+++|.+++...-.+. .....+++.|-..+..+++.
T Consensus 932 ~~qlalifL~dl~~~~~~~~~~~lP~LLH~~~~~lD--H~~~~V~e~a~~lL~~Li~~ 987 (1120)
T PF14228_consen 932 RGQLALIFLVDLAVEPDEDLREHLPLLLHVIFVLLD--HYTPLVQEQARELLVNLIHS 987 (1120)
T ss_pred HHHHHHHHHHHHHcCCcchHhhhhHHHHHHHHHccc--CCChHHHHHHHHHHHHHHHH
Confidence 445677788888877778888899999988765553 34577888888888888764
No 429
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=22.90 E-value=6.2e+02 Score=23.55 Aligned_cols=100 Identities=12% Similarity=0.110 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCC-CChHHHHHHHHHHHHhhcccCChhhHHHHHhhhHHHHHHHH
Q 001584 134 HREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDE-TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSR 212 (1049)
Q Consensus 134 ~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 212 (1049)
.-..++.+|..+.++.--......+.++.-+....+.. .+..+...|+..|.+++...+.......-+--++.++.
T Consensus 33 ~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~--- 109 (160)
T PF11841_consen 33 ILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIR--- 109 (160)
T ss_pred HHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHH---
Confidence 33445666666665422111112223333333333331 26778888888888887754321111111122334443
Q ss_pred HHhhcCCHHHHHHHHHHHHHHhccC
Q 001584 213 QCLASGEEDVAVIAFEIFDELIESP 237 (1049)
Q Consensus 213 ~~l~~~~~~~~~~~~~~l~~l~~~~ 237 (1049)
.++..+.+....++..+..+....
T Consensus 110 -hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 110 -HLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred -HHHcCCHHHHHHHHHHHHHHHhcC
Confidence 345577788888887777766544
No 430
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=22.70 E-value=5.9e+02 Score=23.17 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHh
Q 001584 157 FADMQALLLKCLQDETSNRVRIAALKAIGSF 187 (1049)
Q Consensus 157 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~ 187 (1049)
.+++...+..+|.+ ++.+|+..|++|+..+
T Consensus 15 ~~~l~~~~~~LL~~-~d~~vQklAL~cll~~ 44 (141)
T PF07539_consen 15 SDELYDALLRLLSS-RDPEVQKLALDCLLTW 44 (141)
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence 45677888899998 9999999999998764
No 431
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=22.48 E-value=3.3e+02 Score=25.12 Aligned_cols=77 Identities=18% Similarity=0.189 Sum_probs=42.0
Q ss_pred cchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhh
Q 001584 117 PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (1049)
Q Consensus 117 ~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~ 196 (1049)
|..+|.+++.+.-.++.....+...+..-. + ....+.+.++.... +++.||..|+++|...-.
T Consensus 38 p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~---~----~~~~~aL~LL~~~~---~~~~vr~yAv~~L~~~~~------- 100 (152)
T cd00864 38 PKALPKLLKSVNWNDDEEVSELYQLLKWWA---P----LSPEDALELLSPKY---PDPVVRQYAVRVLESASD------- 100 (152)
T ss_pred hHHHHHHHHHccCCCHHHHHHHHHHHhcCC---C----CCHHHHHHHcCCcC---CCHHHHHHHHHHHHhCCH-------
Confidence 456666666665444444443433333221 1 11222333333322 458899999998865211
Q ss_pred HHHHHhhhHHHHHHH
Q 001584 197 VVKFREFIPSILNVS 211 (1049)
Q Consensus 197 ~~~~~~~~~~ll~~l 211 (1049)
..+..++|++++++
T Consensus 101 -~~l~~ylpQLVQaL 114 (152)
T cd00864 101 -DELLLYLPQLVQAL 114 (152)
T ss_pred -HHHHHHHHHHHHHH
Confidence 12677899999986
No 432
>PF14961 BROMI: Broad-minded protein
Probab=22.46 E-value=2.8e+02 Score=34.75 Aligned_cols=72 Identities=11% Similarity=0.144 Sum_probs=57.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhcc-CCCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhc
Q 001584 81 QSLIESITLEHSAPVRRASANVVSIIAKYA-VPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT 152 (1049)
Q Consensus 81 ~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~-~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~ 152 (1049)
+.+++.+..+.+..||..+.+.+..+--.+ .....|+.+...|...+.++++...+.++++....+...+-.
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~ 236 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLN 236 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchh
Confidence 556666666678899999988887754322 233689999999999999999999999999999888766643
No 433
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=22.30 E-value=7e+02 Score=23.95 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=47.8
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhh
Q 001584 422 PCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (1049)
Q Consensus 422 ~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~l~~~~~~ll~~l~~~l~~~~~~v~~~~~~~l~~l~~~~~ 492 (1049)
+.+.....+++.-+|..++.++..+... ..+.+.++..+...+.+.+..++..+..++..++...+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
Confidence 5666777788877887777777665544 34677777777777777788888888888887766533
No 434
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=21.82 E-value=1.4e+02 Score=28.64 Aligned_cols=78 Identities=22% Similarity=0.226 Sum_probs=0.0
Q ss_pred cchHHHHHHhccCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcccCChhh
Q 001584 117 PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (1049)
Q Consensus 117 ~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~ 196 (1049)
|+.+|.++..+.-.++.....++..+.... .......+.++.....+ +.||..|++.|..+-...
T Consensus 44 p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~-------~~~p~~AL~LL~~~f~~---~~VR~yAv~~L~~~~d~~----- 108 (184)
T PF00613_consen 44 PEALPKLLRSVDWWNPEEVSEAYQLLLQWP-------PISPEDALELLSPNFPD---PFVRQYAVRRLESLSDEE----- 108 (184)
T ss_dssp GGGHHHHHTTSTTTSHHHHHHHHHHHHTSH-------CTTHHHHHHCTSTT------HHHHHHHHHHHCTS-HHH-----
T ss_pred chHHHHHHhhCCCCchhhHHHHHHHHHcCC-------CCCHHHHHHHHHhhccH---HHHHHHHHHHHHHcCchH-----
Q ss_pred HHHHHhhhHHHHHHHH
Q 001584 197 VVKFREFIPSILNVSR 212 (1049)
Q Consensus 197 ~~~~~~~~~~ll~~l~ 212 (1049)
+..++|++++++.
T Consensus 109 ---l~~yLpQLVQaLr 121 (184)
T PF00613_consen 109 ---LLFYLPQLVQALR 121 (184)
T ss_dssp ---HHHHHHHHHHHGG
T ss_pred ---HHHHHHHHHHHhe
No 435
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=20.93 E-value=8.9e+02 Score=24.61 Aligned_cols=153 Identities=18% Similarity=0.247 Sum_probs=76.8
Q ss_pred hhchHHHHHHHHhhh-------cCCChhHHhHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 001584 332 KHVFPPVFEFASVSC-------QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQ 404 (1049)
Q Consensus 332 ~~~~~~ll~~l~~~l-------~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~ 404 (1049)
+.+.|.++..+.... .+++|....-|+..|+..-+. .-++.+++.++-++..+ -..+|.
T Consensus 30 e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~re~----------~A~~~li~l~~~~~~~~----~~l~GD 95 (249)
T PF06685_consen 30 EEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFREE----------RALPPLIRLFSQDDDFL----EDLFGD 95 (249)
T ss_pred HHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHhhh----------hhHHHHHHHHcCCcchH----HHHHcc
Confidence 455666666665544 224454444555555555332 34556666665332211 122222
Q ss_pred -hHhhhcHHHHhhhhhHHHHHHHhccCCC--hHHHHHHHHHHHHHHHhhc---cccccchHHHHHHHHHhhcCCCHhHHH
Q 001584 405 -FAEYLQPEIVSHYESVLPCILNALEDES--DEVKEKSYYALAAFCEDMG---EEILPFLDPLMGKLLAALENSPRNLQE 478 (1049)
Q Consensus 405 -l~~~~~~~~~~~~~~ll~~l~~~l~~~~--~~v~~~a~~~l~~l~~~~~---~~l~~~~~~ll~~l~~~l~~~~~~v~~ 478 (1049)
+.+.++.-+....+.=...+.+.+.++. .-||.+|+.+|..++..-+ +.+..|+..++.... ...+..
T Consensus 96 ~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l---~~~~~~--- 169 (249)
T PF06685_consen 96 FITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFL---ERNPSF--- 169 (249)
T ss_pred hhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh---ccCchH---
Confidence 1222222122222223444555666664 5689999999998887643 234455555554322 222222
Q ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHh
Q 001584 479 TCMSAIGSVAAAAEQAFIPYAERVLELLKIFMV 511 (1049)
Q Consensus 479 ~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~ 511 (1049)
+++.++... ..-|..+++|.+++...
T Consensus 170 ----~~~~Lv~~~---~dL~~~EL~~~I~~~f~ 195 (249)
T PF06685_consen 170 ----LWGSLVADI---CDLYPEELLPEIRKAFE 195 (249)
T ss_pred ----HHHHHHHHH---HhcCHHHhHHHHHHHHH
Confidence 445544322 23356777788877765
No 436
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=20.88 E-value=9.2e+02 Score=24.73 Aligned_cols=99 Identities=16% Similarity=0.187 Sum_probs=64.8
Q ss_pred CChhHHhHHHHHHHHHhhcC--hHHHHHhHH-HHHHHHHhhcCCC---ChhHHHHHHHHHHHhHhhhcHHH--HhhhhhH
Q 001584 349 ASPKYREAAVTAIGIISEGC--AEWMKEKLE-SVLHIVLGALRDP---EQFVRGAASFALGQFAEYLQPEI--VSHYESV 420 (1049)
Q Consensus 349 ~~~~~r~~al~~l~~i~~~~--~~~~~~~l~-~i~~~l~~~l~d~---~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~l 420 (1049)
.....+.-++..+.++.... ...+..+.. .++..+....... +..+|.++...+-.++......- .+.-..+
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 45566777777777776542 344555555 5666666655554 78999999999988877654321 1122335
Q ss_pred HHHHHHhccC--CChHHHHHHHHHHHHHH
Q 001584 421 LPCILNALED--ESDEVKEKSYYALAAFC 447 (1049)
Q Consensus 421 l~~l~~~l~~--~~~~v~~~a~~~l~~l~ 447 (1049)
+..+.+.+.. .++++..+++-|+++++
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 6666664432 46788889999999988
No 437
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=20.63 E-value=1.3e+03 Score=26.33 Aligned_cols=188 Identities=18% Similarity=0.200 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhHHHHHHHHhHHHHHHHH
Q 001584 734 DKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKS 813 (1049)
Q Consensus 734 ~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 813 (1049)
|..++.-+...+..+|++.| ....|...+++.+-.+|.+....- +..|+| ..+ ..-++|++++++-.
T Consensus 54 DQSVVEIcVtRit~aIRET~--siE~YaAaLVDlLd~cL~hnl~p~---g~kded----~PH----aKIAsDi~SSiFLn 120 (851)
T KOG3723|consen 54 DQSVVEICVTRITTAIRETE--SIEKYAAALVDLLDSCLEHNLRPF---GKKDED----TPH----AKIASDIMSSIFLN 120 (851)
T ss_pred cchhhhhHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccCccC---CCCCCC----Cch----hhHHHHHHHHHHHh
Confidence 45555555555556665544 455677788888877777654211 111111 111 12466777877766
Q ss_pred hCC--Ch---HHHHHHHHHHHHHhhccCCCcccchhhhHhHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHH
Q 001584 814 MGP--HF---APIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAF 888 (1049)
Q Consensus 814 ~~~--~~---~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~ 888 (1049)
... .+ .+.-.++++...+-+-.+.. ..-..+.....+++ .++.+.++..++.+ + ..-+.
T Consensus 121 y~K~~~m~~a~p~av~fL~rgn~el~rn~~-~ylslaai~~adLL-------~~hTEv~~~siLSg----n----~~LLr 184 (851)
T KOG3723|consen 121 YNKPPVMALAIPIAVKFLHRGNKELCRNMS-NYLSLAAITKADLL-------ADHTEVIVKSILSG----N----TMLLR 184 (851)
T ss_pred cCCCCceeeehhhHHHHHhccChhhcccch-hhhhHHHHhhhhhc-------cCchHHHHHHHhcc----c----hHHHH
Confidence 543 11 12222333332222211111 11222222223322 22333333333331 1 11234
Q ss_pred HHHHHHhhcCcchhhHHHHHHHhhhhhhCCCCCChhHHhhHHHHHHHHHHhCCCCCChhhHHHHHHhhCC
Q 001584 889 CVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLP 958 (1049)
Q Consensus 889 ~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~l~~~l~~lp 958 (1049)
.+..++...|+.+.|+++.++..|.. .++... .++..+..++......+ +++.+|.+..++.
T Consensus 185 vlS~Vye~~P~~i~PhlP~l~~lL~q----~~p~~~---~ll~~l~~LI~Qk~~ev-L~~ciP~L~g~l~ 246 (851)
T KOG3723|consen 185 VLSAVYEKQPQPINPHLPELLALLSQ----LEPEQY---HLLRLLHVLIKQKQLEV-LQKCIPFLIGHLK 246 (851)
T ss_pred HHHHHHhcCCCccCcccHHHHHHhcC----CCHHHH---HHHHHHHHHHHhccHHH-HHHHHHHHHHHhc
Confidence 56667778888888888887766542 121111 12223333332211111 6888888887774
No 438
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=20.54 E-value=1e+03 Score=25.19 Aligned_cols=156 Identities=18% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHH------------HHHHhcc------CCChHHHH
Q 001584 376 LESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLP------------CILNALE------DESDEVKE 437 (1049)
Q Consensus 376 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~------------~l~~~l~------~~~~~v~~ 437 (1049)
+..++..++..-.-....+|.+|++|+..+...-.+--...+..++| .++..|- +.++--.-
T Consensus 36 i~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~w 115 (312)
T PF04869_consen 36 IDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCW 115 (312)
T ss_dssp HHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHH
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHH
Q ss_pred HHHHHHHHHHHhhc-----------------cccccchHHHHHHHHHhhc-CCCHhHHHHHHHHHHHHHHHhhhhccccH
Q 001584 438 KSYYALAAFCEDMG-----------------EEILPFLDPLMGKLLAALE-NSPRNLQETCMSAIGSVAAAAEQAFIPYA 499 (1049)
Q Consensus 438 ~a~~~l~~l~~~~~-----------------~~l~~~~~~ll~~l~~~l~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~ 499 (1049)
-|+..|..++.... +.....++.+...|...+. ..+..++...+..+..-....++....|+
T Consensus 116 fAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL 195 (312)
T PF04869_consen 116 FAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFL 195 (312)
T ss_dssp HHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHH
Q ss_pred --HHHHHHHHHHHhccChhhhhhHHHHHHHHHHH
Q 001584 500 --ERVLELLKIFMVLTNDEDLRSRARATELLGLV 531 (1049)
Q Consensus 500 --~~~~~~l~~~l~~~~~~~~~~r~~a~~~l~~l 531 (1049)
...++.|.+.....++.+.-+++-+.-.+|..
T Consensus 196 ~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGic 229 (312)
T PF04869_consen 196 SEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGIC 229 (312)
T ss_dssp CSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHH
No 439
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=20.26 E-value=2.2e+02 Score=25.10 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=38.4
Q ss_pred HHHHHHhccCCCCCCcchHHHHHHhccCC--CHHHHHHHHHHHHHhhhhhhhcccc
Q 001584 102 VVSIIAKYAVPAGEWPDLLPFLFQFSQSE--QEEHREVALILFSSLTETIGQTFRP 155 (1049)
Q Consensus 102 ~l~~i~~~~~~~~~w~~ll~~l~~~l~~~--~~~~~~~al~~l~~l~~~~~~~~~~ 155 (1049)
.+..|+...+....+++++..+...+.+. +|....-++.++.+++.+.++.+..
T Consensus 21 ~m~eIa~~t~~~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~ 76 (123)
T cd03571 21 LMAEIARATYNYVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVD 76 (123)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 45555554443347888888888888765 6777778999999998877654433
No 440
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=20.16 E-value=4e+02 Score=23.11 Aligned_cols=66 Identities=21% Similarity=0.210 Sum_probs=38.5
Q ss_pred HHHHHHhcC-CC-ChHhHHHHHHHHHHHHhhcCc---chhhHHHHHHHhhhhhhCC--CCCChhHHhhHHHHH
Q 001584 868 MPLVLKELA-SP-DAMNRRNAAFCVGELCKNGGE---SALKYYGDILRGLYPLFGD--SEPDDAVRDNAAGAV 933 (1049)
Q Consensus 868 ~~~l~~~l~-~~-~~~vr~~a~~~lg~l~~~~~~---~~~~~~~~~l~~L~~~l~~--~~~~~~~~~~a~~~l 933 (1049)
+.-++..|. ++ +++....|....-.++...+. .+..+..+++..|..+=+. -++.+..|.+|+-++
T Consensus 5 lrDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval 77 (114)
T PF10193_consen 5 LRDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVAL 77 (114)
T ss_dssp HHHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHH
Confidence 344455555 22 577778888899999998877 7888888888887754332 133457777776554
No 441
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=20.02 E-value=4.1e+02 Score=22.53 Aligned_cols=57 Identities=18% Similarity=0.287 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhHhhhcHHHHhhhh--hHHHHHHHhc--cCCChHHHHHHHHHHHHHHHhhcc
Q 001584 395 RGAASFALGQFAEYLQPEIVSHYE--SVLPCILNAL--EDESDEVKEKSYYALAAFCEDMGE 452 (1049)
Q Consensus 395 r~~a~~~l~~l~~~~~~~~~~~~~--~ll~~l~~~l--~~~~~~v~~~a~~~l~~l~~~~~~ 452 (1049)
|......++.++...+ ..++.+. .-+|.++... .+.+|-+|+.|..|+..+++..++
T Consensus 3 K~~lvrlianl~~~~~-~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNK-EVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred HHHHHHHHHHHHhCCH-HHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHH
Confidence 4455666676665442 2333221 2366666654 456799999999999999987653
Done!