Query 001585
Match_columns 1049
No_of_seqs 277 out of 1615
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:28:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001585.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001585hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1991 Nuclear transport rece 100.0 7E-166 2E-170 1406.3 98.3 998 1-1036 1-1009(1010)
2 COG5656 SXM1 Importin, protein 100.0 4E-122 1E-126 1009.3 79.5 954 3-1026 2-969 (970)
3 KOG1992 Nuclear export recepto 100.0 6E-104 1E-108 878.2 72.5 908 2-1027 3-959 (960)
4 KOG1993 Nuclear transport rece 100.0 4.2E-78 9.2E-83 668.0 66.4 903 6-1026 2-976 (978)
5 KOG2274 Predicted importin 9 [ 100.0 8.9E-74 1.9E-78 643.9 67.8 913 1-1025 1-1004(1005)
6 COG5657 CSE1 CAS/CSE protein i 100.0 2.4E-59 5.3E-64 530.2 61.8 902 1-1025 1-944 (947)
7 KOG2023 Nuclear transport rece 100.0 7.1E-61 1.5E-65 521.4 47.2 752 3-876 12-823 (885)
8 KOG2171 Karyopherin (importin) 100.0 2.9E-50 6.2E-55 470.1 65.2 678 1-801 1-701 (1075)
9 PF08506 Cse1: Cse1; InterPro 100.0 5.8E-49 1.3E-53 434.5 26.8 344 171-540 8-370 (370)
10 PF03378 CAS_CSE1: CAS/CSE pro 100.0 3.2E-41 6.9E-46 380.3 30.2 404 549-1024 16-435 (435)
11 KOG1241 Karyopherin (importin) 100.0 1.2E-37 2.7E-42 346.5 48.7 674 5-788 2-728 (859)
12 COG5215 KAP95 Karyopherin (imp 100.0 1.6E-32 3.4E-37 295.2 51.1 587 1-682 1-626 (858)
13 KOG2022 Nuclear transport rece 99.9 2.7E-17 5.9E-22 187.8 63.8 643 3-699 6-751 (982)
14 COG5101 CRM1 Importin beta-rel 99.8 8.9E-14 1.9E-18 152.8 54.1 522 2-573 12-633 (1053)
15 KOG2171 Karyopherin (importin) 99.8 1.1E-11 2.5E-16 147.5 69.3 771 9-893 84-1023(1075)
16 KOG2021 Nuclear mRNA export fa 99.7 1.4E-10 3E-15 131.0 55.1 501 4-569 3-586 (980)
17 KOG2081 Nuclear transport regu 99.6 3.4E-12 7.4E-17 141.3 33.9 485 22-588 2-539 (559)
18 KOG1991 Nuclear transport rece 99.5 1.6E-07 3.5E-12 110.7 60.6 531 99-726 15-674 (1010)
19 KOG2023 Nuclear transport rece 99.4 5.2E-09 1.1E-13 117.1 42.9 675 13-822 57-826 (885)
20 KOG1241 Karyopherin (importin) 99.4 7.7E-09 1.7E-13 117.9 44.4 453 332-824 231-722 (859)
21 PF03810 IBN_N: Importin-beta 99.3 3.2E-12 7E-17 110.0 8.0 75 24-98 1-76 (77)
22 KOG2020 Nuclear transport rece 99.2 3.4E-07 7.5E-12 112.3 42.2 142 4-154 10-164 (1041)
23 COG5215 KAP95 Karyopherin (imp 99.2 5.8E-06 1.2E-10 91.7 46.2 456 331-824 234-722 (858)
24 KOG1824 TATA-binding protein-i 99.0 0.00019 4.2E-09 84.5 52.4 648 8-794 9-745 (1233)
25 KOG1824 TATA-binding protein-i 99.0 0.00028 6.1E-09 83.2 52.0 506 80-686 167-725 (1233)
26 PF08389 Xpo1: Exportin 1-like 98.7 1.8E-07 3.9E-12 92.0 11.6 134 101-251 1-137 (148)
27 PF01602 Adaptin_N: Adaptin N 98.1 0.014 3E-07 70.6 39.0 503 4-681 7-522 (526)
28 KOG0915 Uncharacterized conser 98.0 0.0081 1.8E-07 75.0 31.6 198 445-664 970-1182(1702)
29 KOG0213 Splicing factor 3b, su 98.0 0.014 3E-07 67.6 31.3 382 400-824 567-1001(1172)
30 PTZ00429 beta-adaptin; Provisi 97.9 0.14 3.1E-06 62.8 42.7 126 401-547 383-509 (746)
31 PLN03200 cellulose synthase-in 97.8 0.38 8.1E-06 64.6 52.6 250 446-723 418-680 (2102)
32 PF01602 Adaptin_N: Adaptin N 97.8 0.011 2.3E-07 71.6 29.2 203 445-684 92-297 (526)
33 KOG1020 Sister chromatid cohes 97.7 0.35 7.7E-06 61.2 47.9 384 404-819 795-1260(1692)
34 KOG0212 Uncharacterized conser 97.7 0.036 7.9E-07 62.7 27.9 386 398-812 12-405 (675)
35 PLN03200 cellulose synthase-in 97.7 0.53 1.2E-05 63.2 52.8 374 402-841 546-933 (2102)
36 KOG1242 Protein containing ada 97.7 0.027 5.9E-07 64.9 27.3 333 400-776 110-449 (569)
37 KOG1943 Beta-tubulin folding c 97.6 0.41 8.9E-06 58.7 44.0 348 84-547 337-707 (1133)
38 PF10508 Proteasom_PSMB: Prote 97.5 0.043 9.2E-07 65.2 27.3 188 478-683 79-278 (503)
39 KOG1410 Nuclear transport rece 97.4 0.4 8.6E-06 55.5 47.5 142 3-154 4-159 (1082)
40 KOG1060 Vesicle coat complex A 97.4 0.19 4.2E-06 59.2 29.3 110 445-572 121-230 (968)
41 PF12755 Vac14_Fab1_bd: Vacuol 97.3 0.00087 1.9E-08 59.5 7.9 80 493-574 3-83 (97)
42 PF10508 Proteasom_PSMB: Prote 97.3 0.1 2.2E-06 62.1 27.3 329 481-841 43-388 (503)
43 KOG1059 Vesicle coat complex A 97.3 0.26 5.5E-06 57.7 28.7 139 477-640 145-284 (877)
44 PTZ00429 beta-adaptin; Provisi 97.3 0.2 4.2E-06 61.7 29.6 126 445-585 118-245 (746)
45 KOG0166 Karyopherin (importin) 97.2 0.042 9E-07 63.0 21.9 300 514-834 107-414 (514)
46 KOG0212 Uncharacterized conser 97.2 0.66 1.4E-05 53.0 31.0 71 512-584 80-152 (675)
47 KOG2274 Predicted importin 9 [ 97.2 0.98 2.1E-05 54.5 62.1 287 491-804 425-728 (1005)
48 KOG0915 Uncharacterized conser 97.1 1.7 3.7E-05 55.5 41.3 228 311-578 955-1191(1702)
49 KOG1248 Uncharacterized conser 97.0 1.8 3.9E-05 54.1 55.9 323 512-872 514-857 (1176)
50 KOG1242 Protein containing ada 96.9 1.3 2.8E-05 51.6 33.6 402 402-871 33-445 (569)
51 PF03378 CAS_CSE1: CAS/CSE pro 96.9 0.1 2.2E-06 60.2 21.6 222 588-841 17-252 (435)
52 KOG0213 Splicing factor 3b, su 96.8 1.6 3.6E-05 51.3 54.8 173 452-642 778-957 (1172)
53 PF13513 HEAT_EZ: HEAT-like re 96.8 0.00093 2E-08 52.8 2.9 54 490-543 1-55 (55)
54 KOG0166 Karyopherin (importin) 96.7 0.014 2.9E-07 66.9 12.5 222 445-683 165-393 (514)
55 PF12719 Cnd3: Nuclear condens 96.7 0.11 2.4E-06 57.3 19.3 175 472-664 23-207 (298)
56 PF12755 Vac14_Fab1_bd: Vacuol 96.7 0.0072 1.6E-07 53.8 7.7 92 448-544 2-95 (97)
57 KOG1993 Nuclear transport rece 96.6 1.5 3.3E-05 52.2 27.8 253 449-726 504-772 (978)
58 COG5096 Vesicle coat complex, 96.4 3.5 7.6E-05 50.2 32.4 143 445-603 68-210 (757)
59 KOG1061 Vesicle coat complex A 96.4 0.81 1.8E-05 54.5 24.1 150 444-605 98-247 (734)
60 PF12717 Cnd1: non-SMC mitotic 96.3 0.053 1.1E-06 54.8 12.5 150 447-608 3-157 (178)
61 cd00020 ARM Armadillo/beta-cat 96.3 0.0051 1.1E-07 57.4 4.8 99 445-545 20-120 (120)
62 COG5181 HSH155 U2 snRNP splice 96.2 1.3 2.9E-05 51.0 23.5 190 402-608 297-493 (975)
63 KOG1062 Vesicle coat complex A 96.1 4.8 0.0001 48.4 29.7 91 445-547 83-173 (866)
64 KOG0211 Protein phosphatase 2A 96.1 5.5 0.00012 49.0 30.6 407 15-546 248-665 (759)
65 PF08167 RIX1: rRNA processing 96.1 0.073 1.6E-06 52.9 11.9 131 472-603 22-161 (165)
66 PF05918 API5: Apoptosis inhib 96.0 0.99 2.1E-05 53.0 22.2 188 488-701 34-226 (556)
67 KOG1058 Vesicle coat complex C 95.9 2.9 6.4E-05 49.6 25.0 81 478-566 101-181 (948)
68 PF12348 CLASP_N: CLASP N term 95.9 0.25 5.4E-06 52.3 16.1 178 444-641 19-208 (228)
69 PF12348 CLASP_N: CLASP N term 95.9 0.19 4.1E-06 53.2 14.9 166 398-574 19-192 (228)
70 KOG2022 Nuclear transport rece 95.9 4.9 0.00011 48.8 27.0 115 514-642 502-622 (982)
71 KOG1992 Nuclear export recepto 95.7 6.9 0.00015 47.2 55.0 184 481-683 503-709 (960)
72 COG5181 HSH155 U2 snRNP splice 95.7 5.8 0.00013 46.0 41.1 154 475-642 603-762 (975)
73 PF14500 MMS19_N: Dos2-interac 95.7 0.49 1.1E-05 50.8 16.8 146 480-642 3-156 (262)
74 KOG1240 Protein kinase contain 95.6 0.43 9.4E-06 59.1 17.4 234 401-685 438-687 (1431)
75 KOG1240 Protein kinase contain 95.4 1.2 2.6E-05 55.4 20.4 57 490-547 437-493 (1431)
76 PF13513 HEAT_EZ: HEAT-like re 95.1 0.017 3.7E-07 45.5 2.6 55 446-503 1-55 (55)
77 KOG1062 Vesicle coat complex A 94.9 12 0.00026 45.2 29.4 111 445-570 120-230 (866)
78 KOG1058 Vesicle coat complex C 94.9 2.7 5.9E-05 49.8 20.4 150 383-562 109-286 (948)
79 PF02985 HEAT: HEAT repeat; I 94.5 0.036 7.8E-07 37.7 2.7 30 517-546 1-30 (31)
80 PF12460 MMS19_C: RNAPII trans 94.5 12 0.00027 43.4 32.7 280 405-700 116-412 (415)
81 KOG1020 Sister chromatid cohes 94.3 23 0.00051 45.9 38.8 137 92-286 820-960 (1692)
82 PRK09687 putative lyase; Provi 94.2 0.3 6.6E-06 53.1 10.6 151 400-585 68-218 (280)
83 PRK09687 putative lyase; Provi 94.0 0.24 5.1E-06 53.9 9.2 115 400-543 105-219 (280)
84 COG5096 Vesicle coat complex, 93.8 22 0.00048 43.6 26.7 104 445-565 105-210 (757)
85 PF12717 Cnd1: non-SMC mitotic 93.5 2.9 6.2E-05 42.2 15.5 76 489-572 1-76 (178)
86 cd00020 ARM Armadillo/beta-cat 93.5 0.058 1.3E-06 50.1 3.0 88 481-572 12-104 (120)
87 COG5064 SRP1 Karyopherin (impo 93.4 0.75 1.6E-05 49.1 11.0 98 445-547 170-274 (526)
88 PF05004 IFRD: Interferon-rela 93.4 7.2 0.00016 43.1 19.5 205 332-568 57-282 (309)
89 PF13646 HEAT_2: HEAT repeats; 93.2 0.15 3.3E-06 44.5 5.2 75 445-541 13-88 (88)
90 PF10521 DUF2454: Protein of u 93.2 9.6 0.00021 41.6 20.1 103 445-548 15-151 (282)
91 KOG1060 Vesicle coat complex A 92.8 28 0.00061 42.1 24.5 63 480-547 112-174 (968)
92 PF04826 Arm_2: Armadillo-like 92.6 1.9 4.2E-05 45.9 13.1 84 482-566 18-104 (254)
93 PF08167 RIX1: rRNA processing 92.4 3.2 7E-05 41.2 13.7 98 229-361 58-155 (165)
94 KOG1077 Vesicle coat complex A 92.2 31 0.00067 41.2 26.6 107 487-602 321-450 (938)
95 PF13646 HEAT_2: HEAT repeats; 92.2 0.094 2E-06 45.8 2.3 66 486-572 10-75 (88)
96 PF04931 DNA_pol_phi: DNA poly 92.2 1.1 2.4E-05 56.6 12.5 27 91-117 6-32 (784)
97 KOG1248 Uncharacterized conser 92.2 42 0.00092 42.6 62.3 399 367-796 501-924 (1176)
98 KOG0414 Chromosome condensatio 92.2 42 0.00092 42.6 32.5 138 401-547 290-430 (1251)
99 PF08767 CRM1_C: CRM1 C termin 92.2 23 0.00049 39.5 22.5 121 556-685 72-196 (319)
100 KOG0168 Putative ubiquitin fus 92.0 36 0.00079 41.5 27.4 76 514-590 209-289 (1051)
101 PF04931 DNA_pol_phi: DNA poly 91.7 0.19 4E-06 63.3 5.0 31 124-154 1-34 (784)
102 KOG1059 Vesicle coat complex A 91.5 37 0.00081 40.7 31.7 281 475-809 108-397 (877)
103 PF05804 KAP: Kinesin-associat 91.0 13 0.00027 45.8 19.2 95 449-548 266-363 (708)
104 COG5240 SEC21 Vesicle coat com 90.9 37 0.00081 39.5 33.6 423 6-543 67-553 (898)
105 PF12460 MMS19_C: RNAPII trans 90.1 43 0.00092 38.9 32.4 74 492-567 339-414 (415)
106 KOG2956 CLIP-associating prote 89.8 14 0.00031 41.9 16.5 207 376-600 272-493 (516)
107 PF10274 ParcG: Parkin co-regu 88.8 2.5 5.4E-05 42.1 9.0 89 514-603 36-130 (183)
108 KOG1832 HIV-1 Vpr-binding prot 88.4 0.28 6.1E-06 58.3 2.4 13 491-503 759-771 (1516)
109 PF14500 MMS19_N: Dos2-interac 87.8 31 0.00067 37.1 17.4 233 445-697 12-253 (262)
110 KOG0946 ER-Golgi vesicle-tethe 87.6 76 0.0017 38.6 40.6 160 400-571 37-220 (970)
111 PF10363 DUF2435: Protein of u 87.5 2.5 5.3E-05 37.3 7.2 75 516-593 3-80 (92)
112 KOG1943 Beta-tubulin folding c 86.9 98 0.0021 39.2 50.0 138 400-546 355-501 (1133)
113 COG5064 SRP1 Karyopherin (impo 86.7 0.32 6.9E-06 51.8 1.4 122 447-573 300-428 (526)
114 PRK13800 putative oxidoreducta 86.2 3.1 6.8E-05 53.5 10.3 78 445-543 788-865 (897)
115 KOG2051 Nonsense-mediated mRNA 85.8 1.1E+02 0.0024 38.7 27.0 40 26-66 26-66 (1128)
116 PF01603 B56: Protein phosphat 85.3 12 0.00025 43.4 13.4 261 512-824 105-381 (409)
117 KOG4653 Uncharacterized conser 85.1 20 0.00043 43.8 15.0 142 403-557 785-928 (982)
118 KOG0943 Predicted ubiquitin-pr 84.9 0.77 1.7E-05 56.2 3.5 13 736-748 1530-1542(3015)
119 KOG1832 HIV-1 Vpr-binding prot 84.4 0.77 1.7E-05 54.8 3.2 9 334-342 625-633 (1516)
120 KOG1525 Sister chromatid cohes 83.6 1.6E+02 0.0035 38.8 23.5 186 627-824 67-262 (1266)
121 PF08506 Cse1: Cse1; InterPro 83.4 88 0.0019 35.6 23.9 240 399-673 109-365 (370)
122 KOG4224 Armadillo repeat prote 83.1 14 0.00029 40.4 11.4 65 482-547 214-282 (550)
123 PF10363 DUF2435: Protein of u 83.0 3.9 8.5E-05 36.0 6.4 68 480-547 7-74 (92)
124 COG5656 SXM1 Importin, protein 82.8 1.2E+02 0.0026 36.8 48.7 159 622-790 428-587 (970)
125 KOG4653 Uncharacterized conser 82.7 39 0.00085 41.4 16.0 168 515-703 726-897 (982)
126 KOG0211 Protein phosphatase 2A 80.7 1.6E+02 0.0035 36.7 25.7 390 381-822 274-676 (759)
127 PF05004 IFRD: Interferon-rela 80.3 1E+02 0.0022 34.2 21.1 161 514-683 41-215 (309)
128 PF10521 DUF2454: Protein of u 79.9 44 0.00094 36.5 14.7 101 444-546 87-204 (282)
129 PF12719 Cnd3: Nuclear condens 79.8 60 0.0013 35.8 15.9 142 11-154 34-183 (298)
130 KOG2549 Transcription initiati 78.8 14 0.00031 42.8 10.4 106 332-461 261-370 (576)
131 PF13251 DUF4042: Domain of un 78.8 67 0.0014 32.4 14.2 121 525-684 49-175 (182)
132 KOG1061 Vesicle coat complex A 78.5 56 0.0012 39.7 15.5 102 475-585 85-186 (734)
133 cd08050 TAF6 TATA Binding Prot 78.4 13 0.00028 41.8 10.2 103 332-461 231-340 (343)
134 KOG2213 Apoptosis inhibitor 5/ 78.4 1E+02 0.0022 34.4 16.2 52 492-546 40-91 (460)
135 PF12231 Rif1_N: Rap1-interact 78.3 1.3E+02 0.0028 34.3 24.7 244 423-684 38-304 (372)
136 PF03224 V-ATPase_H_N: V-ATPas 77.5 68 0.0015 35.6 15.7 126 418-568 70-200 (312)
137 PF04510 DUF577: Family of unk 77.1 79 0.0017 31.2 14.4 61 88-149 3-68 (174)
138 KOG2160 Armadillo/beta-catenin 76.9 1.3E+02 0.0027 33.4 16.7 101 445-548 96-199 (342)
139 PF00514 Arm: Armadillo/beta-c 76.7 3 6.4E-05 30.3 3.1 29 516-544 12-40 (41)
140 PF01603 B56: Protein phosphat 76.6 75 0.0016 36.8 16.0 160 403-572 150-310 (409)
141 COG5116 RPN2 26S proteasome re 76.3 6.6 0.00014 45.2 6.9 112 447-575 567-678 (926)
142 COG5098 Chromosome condensatio 76.2 87 0.0019 37.5 15.7 138 399-547 276-417 (1128)
143 KOG0414 Chromosome condensatio 75.8 17 0.00036 45.9 10.6 167 407-590 898-1083(1251)
144 PRK13800 putative oxidoreducta 75.2 4.4 9.6E-05 52.1 6.1 77 445-542 820-896 (897)
145 PF04826 Arm_2: Armadillo-like 74.3 18 0.00039 38.6 9.5 122 445-575 67-191 (254)
146 PF04821 TIMELESS: Timeless pr 72.9 1.4E+02 0.0031 32.2 16.3 160 651-819 42-215 (266)
147 PF11705 RNA_pol_3_Rpc31: DNA- 72.7 3 6.5E-05 44.0 3.1 8 941-948 206-214 (233)
148 PF05536 Neurochondrin: Neuroc 72.6 2.2E+02 0.0048 34.3 21.4 152 655-811 99-259 (543)
149 PF11865 DUF3385: Domain of un 72.6 29 0.00063 34.2 9.8 127 423-573 9-142 (160)
150 PF07571 DUF1546: Protein of u 71.3 8.6 0.00019 33.9 5.1 59 398-462 18-79 (92)
151 PF02985 HEAT: HEAT repeat; I 71.2 10 0.00022 25.6 4.4 28 91-118 3-30 (31)
152 KOG2956 CLIP-associating prote 69.2 1.6E+02 0.0034 33.9 15.2 151 512-682 325-476 (516)
153 KOG2933 Uncharacterized conser 69.0 34 0.00073 37.0 9.6 136 399-547 101-236 (334)
154 KOG0392 SNF2 family DNA-depend 68.0 30 0.00065 44.1 10.3 171 403-587 750-927 (1549)
155 KOG0946 ER-Golgi vesicle-tethe 67.6 3.1E+02 0.0066 33.8 31.7 173 328-525 73-263 (970)
156 KOG4535 HEAT and armadillo rep 66.5 21 0.00046 40.4 7.9 121 445-569 497-623 (728)
157 PF08767 CRM1_C: CRM1 C termin 66.1 2.2E+02 0.0048 31.7 20.3 131 139-322 88-224 (319)
158 PF08064 UME: UME (NUC010) dom 65.7 23 0.00049 32.2 6.9 77 489-569 28-106 (107)
159 PF08161 NUC173: NUC173 domain 65.4 37 0.00081 34.7 9.1 134 574-723 18-181 (198)
160 PF05804 KAP: Kinesin-associat 64.2 3.6E+02 0.0079 33.5 29.6 209 445-682 344-563 (708)
161 PF08064 UME: UME (NUC010) dom 63.1 36 0.00077 31.0 7.6 85 739-825 10-96 (107)
162 KOG2085 Serine/threonine prote 63.0 1.4E+02 0.003 33.7 13.2 93 630-727 319-418 (457)
163 PF05536 Neurochondrin: Neuroc 62.9 3.4E+02 0.0074 32.7 27.0 167 596-776 94-266 (543)
164 PF08389 Xpo1: Exportin 1-like 62.6 50 0.0011 31.6 9.3 47 490-540 100-148 (148)
165 KOG1078 Vesicle coat complex C 62.5 3.7E+02 0.0081 33.1 30.5 136 399-556 405-541 (865)
166 smart00802 UME Domain in UVSB 62.4 36 0.00078 30.9 7.4 86 737-824 8-95 (107)
167 KOG2025 Chromosome condensatio 62.0 3.7E+02 0.0079 32.8 24.4 75 473-547 82-157 (892)
168 smart00802 UME Domain in UVSB 61.3 68 0.0015 29.2 9.0 85 513-599 8-98 (107)
169 PF10274 ParcG: Parkin co-regu 61.2 1.5E+02 0.0032 29.9 12.0 63 629-693 57-119 (183)
170 TIGR02270 conserved hypothetic 60.9 27 0.00059 40.2 8.0 76 445-543 130-205 (410)
171 PF12054 DUF3535: Domain of un 60.7 1.9E+02 0.0041 33.8 14.9 97 445-546 100-198 (441)
172 PF03224 V-ATPase_H_N: V-ATPas 60.4 1.5E+02 0.0033 32.8 13.8 200 655-874 60-273 (312)
173 KOG2062 26S proteasome regulat 59.3 37 0.0008 40.8 8.5 109 447-572 570-678 (929)
174 cd00256 VATPase_H VATPase_H, r 57.0 3.7E+02 0.008 31.2 22.3 343 35-459 52-423 (429)
175 COG5218 YCG1 Chromosome conden 56.8 1.7E+02 0.0037 34.5 12.9 73 473-547 89-163 (885)
176 PF04118 Dopey_N: Dopey, N-ter 56.1 3.2E+02 0.0069 30.2 17.5 33 102-134 3-35 (307)
177 KOG1967 DNA repair/transcripti 56.0 75 0.0016 39.4 10.5 91 513-605 906-1003(1030)
178 KOG2160 Armadillo/beta-catenin 55.5 59 0.0013 35.9 8.9 111 748-874 89-200 (342)
179 PF09026 CENP-B_dimeris: Centr 55.3 3.9 8.5E-05 35.2 0.0 6 980-985 41-46 (101)
180 PF08569 Mo25: Mo25-like; Int 55.0 2.5E+02 0.0054 31.4 14.0 140 49-224 87-237 (335)
181 PF13001 Ecm29: Proteasome sta 51.2 1.1E+02 0.0024 36.4 11.3 82 6-99 25-113 (501)
182 smart00185 ARM Armadillo/beta- 49.2 13 0.00029 26.4 2.0 28 517-544 13-40 (41)
183 KOG1967 DNA repair/transcripti 49.2 1.1E+02 0.0023 38.2 10.3 92 479-571 912-1007(1030)
184 cd00256 VATPase_H VATPase_H, r 49.0 4.9E+02 0.011 30.3 24.7 118 407-548 56-176 (429)
185 PF04388 Hamartin: Hamartin pr 47.2 3.6E+02 0.0079 33.4 15.0 133 518-682 6-139 (668)
186 PF13251 DUF4042: Domain of un 46.2 3.3E+02 0.0071 27.5 12.1 143 402-547 2-176 (182)
187 KOG0889 Histone acetyltransfer 45.9 1.3E+03 0.028 34.3 24.0 333 493-857 24-403 (3550)
188 PF01465 GRIP: GRIP domain; I 45.6 40 0.00087 25.3 4.0 36 84-119 3-38 (46)
189 KOG3961 Uncharacterized conser 43.0 1.7E+02 0.0037 29.9 9.0 88 514-603 112-205 (262)
190 KOG4524 Uncharacterized conser 42.6 8.3E+02 0.018 31.1 21.5 103 496-600 568-677 (1014)
191 PF13817 DDE_Tnp_IS66_C: IS66 41.7 28 0.0006 25.2 2.5 28 982-1009 8-35 (39)
192 PF10350 DUF2428: Putative dea 41.4 4.7E+02 0.01 27.9 13.4 121 447-568 112-249 (255)
193 KOG4413 26S proteasome regulat 41.3 5.1E+02 0.011 28.4 13.2 213 629-872 62-288 (524)
194 PF12612 TFCD_C: Tubulin foldi 39.9 2E+02 0.0043 29.3 9.6 35 512-546 3-37 (193)
195 PF11698 V-ATPase_H_C: V-ATPas 39.1 28 0.0006 32.2 2.8 59 488-546 56-116 (119)
196 PF04388 Hamartin: Hamartin pr 39.0 47 0.001 41.0 5.7 76 490-569 82-162 (668)
197 PF10487 Nup188: Nucleoporin s 38.9 6.4E+02 0.014 32.7 15.8 117 736-871 545-669 (931)
198 KOG1851 Uncharacterized conser 38.9 3.8E+02 0.0082 35.8 13.3 151 34-223 1524-1679(1710)
199 KOG2137 Protein kinase [Signal 38.1 2.8E+02 0.0061 33.8 11.5 87 629-722 369-457 (700)
200 PLN03076 ARF guanine nucleotid 38.1 1.3E+03 0.029 32.2 31.6 97 51-154 1150-1255(1780)
201 PF08569 Mo25: Mo25-like; Int 37.1 1.7E+02 0.0036 32.8 9.1 75 472-548 206-286 (335)
202 KOG1820 Microtubule-associated 36.7 3.9E+02 0.0084 33.8 12.9 134 399-546 308-444 (815)
203 PF00514 Arm: Armadillo/beta-c 36.6 1E+02 0.0022 22.1 5.0 26 92-117 16-41 (41)
204 smart00755 Grip golgin-97, Ran 36.4 62 0.0013 24.3 3.8 34 85-119 3-36 (46)
205 KOG2062 26S proteasome regulat 36.1 3E+02 0.0065 33.6 11.1 56 485-547 564-620 (929)
206 KOG1048 Neural adherens juncti 35.4 1.6E+02 0.0035 36.0 9.0 101 485-589 242-349 (717)
207 KOG1820 Microtubule-associated 34.2 4.4E+02 0.0095 33.3 12.8 134 445-590 308-448 (815)
208 smart00638 LPD_N Lipoprotein N 33.6 1.2E+02 0.0026 37.0 8.2 122 401-542 412-542 (574)
209 PF11865 DUF3385: Domain of un 33.2 2.3E+02 0.005 27.9 8.5 48 761-809 106-153 (160)
210 KOG3036 Protein involved in ce 33.1 3.7E+02 0.0079 28.4 9.8 141 335-505 96-247 (293)
211 PF07571 DUF1546: Protein of u 33.0 1.4E+02 0.003 26.3 6.2 50 102-152 20-78 (92)
212 KOG2759 Vacuolar H+-ATPase V1 32.9 8E+02 0.017 28.1 25.6 120 405-548 66-189 (442)
213 KOG4413 26S proteasome regulat 32.6 7.1E+02 0.015 27.4 19.2 60 487-546 93-158 (524)
214 PF04078 Rcd1: Cell differenti 32.4 6.3E+02 0.014 27.0 11.8 62 797-872 109-170 (262)
215 COG5657 CSE1 CAS/CSE protein i 32.0 1.2E+03 0.025 29.7 17.0 57 512-570 529-586 (947)
216 PF13925 Katanin_con80: con80 31.7 98 0.0021 30.6 5.7 49 107-155 45-101 (164)
217 smart00567 EZ_HEAT E-Z type HE 31.7 65 0.0014 21.3 3.1 15 490-504 1-15 (30)
218 KOG2933 Uncharacterized conser 31.1 2.7E+02 0.0058 30.4 8.8 109 445-560 101-213 (334)
219 KOG0168 Putative ubiquitin fus 31.0 1.2E+03 0.025 29.5 19.6 162 652-822 209-376 (1051)
220 smart00638 LPD_N Lipoprotein N 30.7 2.8E+02 0.006 33.8 10.6 94 445-547 410-511 (574)
221 KOG2259 Uncharacterized conser 30.6 9.4E+02 0.02 29.3 13.7 55 490-547 387-441 (823)
222 PF04078 Rcd1: Cell differenti 30.2 1.5E+02 0.0033 31.5 6.9 161 425-611 40-218 (262)
223 PF05327 RRN3: RNA polymerase 30.1 6.9E+02 0.015 30.3 13.6 17 778-794 106-122 (563)
224 PF11841 DUF3361: Domain of un 29.9 5.5E+02 0.012 25.3 11.7 45 642-686 89-134 (160)
225 KOG2549 Transcription initiati 29.9 7.4E+02 0.016 29.4 12.6 142 514-668 205-353 (576)
226 PF12783 Sec7_N: Guanine nucle 29.2 5E+02 0.011 25.5 10.4 63 760-823 91-155 (168)
227 cd03572 ENTH_epsin_related ENT 29.0 1.4E+02 0.0031 27.8 5.8 46 502-547 24-69 (122)
228 PF05327 RRN3: RNA polymerase 28.6 8.9E+02 0.019 29.4 14.2 21 881-901 199-219 (563)
229 KOG2021 Nuclear mRNA export fa 28.6 1.2E+03 0.026 28.9 39.4 57 489-547 206-262 (980)
230 KOG1525 Sister chromatid cohes 28.4 1.6E+03 0.034 30.2 24.7 60 759-819 276-335 (1266)
231 KOG2137 Protein kinase [Signal 27.9 6.9E+02 0.015 30.6 12.4 114 410-542 374-493 (700)
232 PF08713 DNA_alkylation: DNA a 27.5 1.5E+02 0.0032 30.6 6.5 110 425-559 86-196 (213)
233 smart00288 VHS Domain present 27.5 4.4E+02 0.0096 24.9 9.1 37 512-548 33-69 (133)
234 PF02084 Bindin: Bindin; Inte 27.4 4.8E+02 0.01 26.9 9.4 41 981-1026 121-161 (238)
235 KOG2038 CAATT-binding transcri 27.0 60 0.0013 39.2 3.6 70 904-986 876-945 (988)
236 KOG1949 Uncharacterized conser 26.7 1.2E+03 0.026 28.6 13.7 150 512-681 169-329 (1005)
237 PF04147 Nop14: Nop14-like fam 26.1 62 0.0013 41.2 3.9 53 910-977 338-390 (840)
238 KOG0567 HEAT repeat-containing 26.0 2.1E+02 0.0045 30.5 6.9 51 487-546 231-281 (289)
239 PF13324 GCIP: Grap2 and cycli 25.8 88 0.0019 34.0 4.6 21 884-904 124-144 (275)
240 KOG3961 Uncharacterized conser 25.7 7.6E+02 0.016 25.5 10.7 94 552-662 111-207 (262)
241 KOG0943 Predicted ubiquitin-pr 25.7 44 0.00095 42.1 2.2 7 1038-1044 1903-1909(3015)
242 PF14225 MOR2-PAG1_C: Cell mor 25.4 8.7E+02 0.019 26.1 12.0 109 472-589 150-258 (262)
243 PF04281 Tom22: Mitochondrial 25.4 2.1E+02 0.0046 27.3 6.3 18 1028-1045 114-131 (137)
244 PF01347 Vitellogenin_N: Lipop 25.2 2.1E+02 0.0046 35.2 8.4 99 421-542 483-586 (618)
245 PF02724 CDC45: CDC45-like pro 25.2 56 0.0012 40.0 3.2 18 756-773 9-26 (622)
246 PF12830 Nipped-B_C: Sister ch 24.6 1.8E+02 0.0039 29.5 6.2 64 5-70 9-77 (187)
247 PRK02922 glycogen synthesis pr 24.6 3.6E+02 0.0079 21.9 6.3 53 982-1034 6-59 (67)
248 KOG4224 Armadillo repeat prote 24.4 2.3E+02 0.0051 31.4 7.1 102 445-547 221-323 (550)
249 PF05285 SDA1: SDA1; InterPro 24.4 96 0.0021 34.6 4.6 18 1010-1027 187-204 (324)
250 PF14668 RICTOR_V: Rapamycin-i 24.3 1.8E+02 0.0038 24.4 4.9 53 448-505 3-58 (73)
251 PF08623 TIP120: TATA-binding 24.1 3.3E+02 0.0071 27.1 7.6 100 761-870 46-146 (169)
252 PF09324 DUF1981: Domain of un 23.7 3.6E+02 0.0078 23.3 7.0 50 99-148 29-84 (86)
253 KOG1846 Uncharacterized conser 23.7 1.5E+03 0.034 28.4 14.5 41 685-729 1335-1375(1777)
254 COG5116 RPN2 26S proteasome re 23.3 5.1E+02 0.011 30.7 9.8 61 480-547 555-617 (926)
255 KOG1517 Guanine nucleotide bin 23.2 3.5E+02 0.0076 34.5 9.0 96 446-547 571-673 (1387)
256 COG5095 TAF6 Transcription ini 23.2 4.2E+02 0.009 28.7 8.4 146 471-637 193-357 (450)
257 PF03130 HEAT_PBS: PBS lyase H 22.9 46 0.00099 21.6 1.0 14 492-505 1-14 (27)
258 PF14664 RICTOR_N: Rapamycin-i 22.6 1.2E+03 0.025 26.7 12.8 168 497-687 8-180 (371)
259 cd08050 TAF6 TATA Binding Prot 22.4 1E+03 0.023 26.6 12.4 141 514-664 176-319 (343)
260 KOG2032 Uncharacterized conser 22.4 1.3E+03 0.028 27.1 17.6 91 512-604 254-349 (533)
261 KOG4500 Rho/Rac GTPase guanine 22.2 2.5E+02 0.0054 32.0 6.9 88 480-569 319-412 (604)
262 PF12765 Cohesin_HEAT: HEAT re 21.9 83 0.0018 23.1 2.3 25 515-539 17-41 (42)
263 PF04118 Dopey_N: Dopey, N-ter 21.5 1.1E+03 0.023 26.1 11.8 96 492-590 71-172 (307)
264 KOG3241 Uncharacterized conser 21.5 68 0.0015 31.2 2.2 10 856-865 131-140 (227)
265 KOG2032 Uncharacterized conser 21.3 1.4E+03 0.03 26.9 19.8 99 473-574 256-357 (533)
266 KOG2259 Uncharacterized conser 21.1 1.6E+03 0.034 27.5 20.3 94 445-546 211-311 (823)
267 PF05764 YL1: YL1 nuclear prot 21.0 1.3E+02 0.0029 31.8 4.6 60 897-977 15-74 (240)
268 KOG4692 Predicted E3 ubiquitin 20.7 3.1E+02 0.0068 30.0 7.1 106 711-823 241-354 (489)
269 PF01347 Vitellogenin_N: Lipop 20.7 1.4E+02 0.003 36.8 5.5 93 445-546 448-554 (618)
270 COG5218 YCG1 Chromosome conden 20.1 4.9E+02 0.011 31.0 8.9 88 445-538 104-192 (885)
271 KOG1822 Uncharacterized conser 20.0 2.5E+03 0.054 29.5 26.8 100 472-573 872-972 (2067)
No 1
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-166 Score=1406.35 Aligned_cols=998 Identities=46% Similarity=0.783 Sum_probs=915.8
Q ss_pred CChHHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCC-CcCC
Q 001585 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEP-NEQQ 79 (1049)
Q Consensus 1 Md~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iRq~Aai~lKn~i~~~W~~~~~-~~~~ 79 (1049)
||.+.+.++|.+|++||++.|+.||++|++++++|||..+|++|+.+.+.+.+|||+|||||||.|.++|+..+. ..+.
T Consensus 1 md~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~ 80 (1010)
T KOG1991|consen 1 MDLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPF 80 (1010)
T ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998642 2466
Q ss_pred CCChHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhhhh---hHHHHHHHHHHHHHhccc
Q 001585 80 KISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEY 156 (1049)
Q Consensus 80 ~i~~~~k~~ir~~ll~~L~~~~~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~ 156 (1049)
.+++++|+.||++|+.++..+|..||.|++.|+..|...|||++||++++.+..+++++ .++|||.||++++|.|
T Consensus 81 ~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~y-- 158 (1010)
T KOG1991|consen 81 GIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTY-- 158 (1010)
T ss_pred CCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHH--
Confidence 79999999999999999999999999999999999999999999999999999999998 5899999999999999
Q ss_pred CCCCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHhhhccCCcccCChh
Q 001585 157 QPTDSTSMKGYRIYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPN 236 (1049)
Q Consensus 157 ~~t~~~~~~~~r~~~~~~~~~~~~l~~i~~~~~p~Ll~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~lp~~~~~~~ 236 (1049)
+||+++.|.++..++..+||.+++++.+++..+ +.++.+++++|+|||++++++++|..+.+++
T Consensus 159 --------------e~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~--s~~s~el~klIlKifks~~~~~LP~~L~~~~ 222 (1010)
T KOG1991|consen 159 --------------EWKKDEERQPLGEAVEELFPDILQIFNGLLSQE--SYQSVELQKLILKIFKSLIYYELPLELSAPE 222 (1010)
T ss_pred --------------hhccccccccHHHHHHHHHHHHHHHHHhhcccc--chHHHHHHHHHHHHHHHHHHHhCCHHhhCch
Confidence 899999999999999999999999999998865 4668999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHH
Q 001585 237 VFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILEC 316 (1049)
Q Consensus 237 ~l~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~ 316 (1049)
.|..||++|+.++++++|.++++.|+++|..|||||||||++++++|+|+|||+|+++.++|++|+.+|..++++.+++.
T Consensus 223 ~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~ 302 (1010)
T KOG1991|consen 223 TFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEV 302 (1010)
T ss_pred hHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred HHHHHHHhhCCcccCHHHHHHHHHHHHhhcCCchhhhhchhhHHHHHHHHhhhccccChhhHhhhhcCHHHHHhHhcCcc
Q 001585 317 HLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDII 396 (1049)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~~ 396 (1049)
+++++.+.+.+.|.+++++++++.|+..|++.+.+|++++||+..++..+|||.||++++|+|+|++||.||||+.+|.+
T Consensus 303 ~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ 382 (1010)
T KOG1991|consen 303 FLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIF 382 (1010)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchh
Confidence 99999997778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHH
Q 001585 397 EDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERM 476 (1049)
Q Consensus 397 ~d~~s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~ 476 (1049)
+|.+||+.||..++.+++++||+++++.+++|+.++|++|..++....+.|+|||||+++|++++.+.++++|+.+++.|
T Consensus 383 ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~f 462 (1010)
T KOG1991|consen 383 EDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYF 462 (1010)
T ss_pred cccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHH
Confidence 99999999999999999999999999999999999999998875555699999999999999999999999999999999
Q ss_pred HHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHHhcc-cccccc
Q 001585 477 LVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR-DPELPVRVDSVFALRSFVEACR-DLNEIR 554 (1049)
Q Consensus 477 l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~-d~~~~V~~~Aa~AL~~~~~~~~-~~~~l~ 554 (1049)
+++||+|+|+++.++||+||||++|+|++..|+++..+.+++..+.+||. |+++|||+.||.||+.|+.+++ .++.++
T Consensus 463 lv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~ 542 (1010)
T KOG1991|consen 463 LVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS 542 (1010)
T ss_pred HHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence 99999999999999999999999999999999999999999999999998 8999999999999999999986 557899
Q ss_pred cchHHHHHHHHHHhhhhchhhHHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHH
Q 001585 555 PILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAI 634 (1049)
Q Consensus 555 p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i 634 (1049)
|+++++|+.|+++++++++|.+..+|+++|..|++++.|||.++|++|+.+|++++.+++++.+.++++.+.++|+|+||
T Consensus 543 ~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti 622 (1010)
T KOG1991|consen 543 AHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTI 622 (1010)
T ss_pred hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999875555556788999999999999
Q ss_pred HHHHHhhcCChHHHHHHHhhHHHHHHHHcccchhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhHhhhHhhh
Q 001585 635 STILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNI 714 (1049)
Q Consensus 635 ~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~isp~l~~l~~~l~~~~~~~~~~~l~~~ 714 (1049)
++++.+++++|+++.++++.++|++..+|+++..||+++++++...++...+.|||.||++||.+++++.+|+.+|++++
T Consensus 623 ~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~ 702 (1010)
T KOG1991|consen 623 STILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDM 702 (1010)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHhhcCcccccccCCcchHHHHHHHHHHHhcCCCCCCcccCchhhHHHHHHHhcccCchhchHHHHHHHHHHHHh
Q 001585 715 LVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR 794 (1049)
Q Consensus 715 ~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~l~~l~~ 794 (1049)
++.|+||+.+|...++ ++|.|++.++.||++++.++..+++|+..||+|++.++++|+|.+++++|.+++.++.|++.
T Consensus 703 ~~~l~N~vt~g~~~~~--s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~ 780 (1010)
T KOG1991|consen 703 MPALHNYVTYGTPSLL--SNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTR 780 (1010)
T ss_pred HHHHhhheeeCchhhh--ccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhc
Confidence 9999999999999888 78999999999999999998888999999999999999999999999999999999999987
Q ss_pred -hhhhHHHHHHHHHHHHHHhhCHHHHHHHHHhhCccHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHhcc-c
Q 001585 795 -AEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLAL-T 872 (1049)
Q Consensus 795 -~~~~~~~~~~l~v~~~~~~~~p~~~l~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~dkKl~~lal~~ll~~-~ 872 (1049)
.+++.++..++.|++++++|||..++++|+..|++..||..|+.... .+.+.||||+|++||++|++. +
T Consensus 781 ~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~~~~---------~~~~~HDkKlcvL~l~tli~l~~ 851 (1010)
T KOG1991|consen 781 EVETSELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQFIN---------QFKKVHDKKLCVLGLLTLISLGQ 851 (1010)
T ss_pred cccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHHHHH---------HHHhhhhHHHHHHHHHHHHhccc
Confidence 77999999999999999999999999999999999999999999999 888899999999999999999 5
Q ss_pred cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHH
Q 001585 873 ADQLPGEALGRVFRATLDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLA 952 (1049)
Q Consensus 873 ~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~l~ 952 (1049)
.+++|....++++..++.++.+||+++++|++.+++.++++ ++ ++++|+|+-.+ |++|+++++++|.+.+.
T Consensus 852 ~~~~~~e~l~~l~~~lv~L~~~Lp~ala~ra~~~ee~~~e~---~~---~~~~~~e~~~~---d~dD~d~~d~d~~~~~~ 922 (1010)
T KOG1991|consen 852 DPQLPSEVLGQLGPALVELLLSLPEALAERAQVEEEDSEEG---EE---EDDDEEEDFID---DEDDIDEDDQDYLDEYG 922 (1010)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc---cC---CCCcchhhccC---ccccccccchhHHHhhc
Confidence 56676667789999999999999999999977654321111 11 11111111111 11111122223455444
Q ss_pred HHHhhcCC-CCCCCCCCCC--CCCCCCCCCCCCCCCchHHHHHHHHHHHHhhChHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001585 953 AQARAFRP-HDEDDDDSDD--DFSDDEELQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVAQHAD 1029 (1049)
Q Consensus 953 ~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~pl~~vd~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 1029 (1049)
.-+....+ .++|||.++| +++||+.|+||||+||+|.+|+++++.++++++++|+.|+++|++++|+.||.++++++
T Consensus 923 ~~~~~~~~~~~~ddd~d~~~~~~~ed~~f~t~LD~VD~f~~f~~~i~~lq~~d~~~yq~l~~~L~~~q~~~lq~I~~~~~ 1002 (1010)
T KOG1991|consen 923 ELALEKEDSLDDDDDFDEDELDLEEDELFETPLDQVDPFQLFKEAITNLQSSDAVRYQKLISTLTPEQQDSLQTILTHAE 1002 (1010)
T ss_pred cccccccccccccccccchhccccccccccCcccccchHHHHHHHHHhhhccChHHHHHHHhcCCHHHHHHHHHHHHhHH
Confidence 32211111 1222222222 45678999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHH
Q 001585 1030 QRRVEIE 1036 (1049)
Q Consensus 1030 ~~~~~~~ 1036 (1049)
+||.+++
T Consensus 1003 ~r~a~~~ 1009 (1010)
T KOG1991|consen 1003 QRRAVAE 1009 (1010)
T ss_pred HHHHHhc
Confidence 9998764
No 2
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-122 Score=1009.32 Aligned_cols=954 Identities=24% Similarity=0.418 Sum_probs=848.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCC-CcCCCC
Q 001585 3 LPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEP-NEQQKI 81 (1049)
Q Consensus 3 ~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iRq~Aai~lKn~i~~~W~~~~~-~~~~~i 81 (1049)
.+++.||+.+|+++|++.|+.||++|++++++|||..+|++|..+++.++.+|++|||||||+|.+.|+...+ ....-.
T Consensus 2 ~~ellqcf~qTldada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~De 81 (970)
T COG5656 2 REELLQCFLQTLDADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADE 81 (970)
T ss_pred hHHHHHHHHHHhccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcc
Confidence 4789999999999999999999999999999999999999999999899999999999999999999997322 122234
Q ss_pred ChHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhCC-CCchhHHHHHHHHhhhh---hHHHHHHHHHHHHHhcccC
Q 001585 82 SQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEYQ 157 (1049)
Q Consensus 82 ~~~~k~~ir~~ll~~L~~~~~~ir~~l~~~i~~Ia~~d~P-~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~~ 157 (1049)
+++.|+.++++++.....++...|+.+..++..|...||| +.|| ++|...+++.++ .++.||.|+++++|.|
T Consensus 82 k~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfkay--- 157 (970)
T COG5656 82 KSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFKAY--- 157 (970)
T ss_pred cHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHHHH---
Confidence 4556666666666666678899999999999999999999 8899 999999999988 6899999999999999
Q ss_pred CCCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHhhhccCCcccCChhh
Q 001585 158 PTDSTSMKGYRIYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNV 237 (1049)
Q Consensus 158 ~t~~~~~~~~r~~~~~~~~~~~~l~~i~~~~~p~Ll~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~lp~~~~~~~~ 237 (1049)
|||-+..|..+..++.+.||.+.++.+.+...+ +..+.++.++++|+|++.+++++|.++...+.
T Consensus 158 -------------Rwk~ndeq~di~~li~alfpile~~g~nl~s~~--ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~ 222 (970)
T COG5656 158 -------------RWKYNDEQVDILMLITALFPILEKVGGNLESQG--NYGSVETLMLILKSFKSVCYYSLPDFLSAIET 222 (970)
T ss_pred -------------hhhccchHhhHHHHHHHhhHHHHHHhhccccCC--chhHHHHHHHHHHHHHHHHHhhCCHHHccchh
Confidence 888888888899999999999999999887643 34578999999999999999999999998999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHH
Q 001585 238 FNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECH 317 (1049)
Q Consensus 238 l~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~ 317 (1049)
+..|+++++.+++.|+|.+++..|.+.|..++|.|||||++.+++|+++||+++.+. ..|..|...|.. .+|.+++.+
T Consensus 223 f~sw~ql~l~i~qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~-~~y~~f~~~f~t-~vp~il~tf 300 (970)
T COG5656 223 FSSWFQLSLRILQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYK-KSYLSFYITFMT-RVPMILATF 300 (970)
T ss_pred hHHHHHHHHHHHcCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHH-HHHHHHHHH
Confidence 999999999999999998888889999999999999999999999999999986543 367788888877 899999999
Q ss_pred HHHHHHhhC-CcccCHHHHHHHHHHHHhhcCCchhhhhchhhHHHHHHHHhhhccccChhhHhhhhcCHHHHHhHhcCcc
Q 001585 318 LNLLNRIRV-GGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDII 396 (1049)
Q Consensus 318 ~~~l~~~~~-~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~~ 396 (1049)
++.+...++ +-|.+|+.++.+..|+..|+..+.+|++++||+.-++.++|||.+|++++++|+||+||+||+|+..|.+
T Consensus 301 fkqie~wgqgqLWlsd~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~ 380 (970)
T COG5656 301 FKQIEEWGQGQLWLSDIELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFF 380 (970)
T ss_pred HHHHHHhhcCCeecchHHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchh
Confidence 999988655 5599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHH
Q 001585 397 EDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERM 476 (1049)
Q Consensus 397 ~d~~s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~ 476 (1049)
++.+|+..||..++-.+..++++.+++.+++|+...|+++..+|.+.+|.+++|||++++.++...+.+.++....++.|
T Consensus 381 d~g~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~f 460 (970)
T COG5656 381 DNGLSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYF 460 (970)
T ss_pred cCCCChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHH
Confidence 99999999999999999999999999999999999999988888776799999999999999999778888888889999
Q ss_pred HHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccc
Q 001585 477 LVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPI 556 (1049)
Q Consensus 477 l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~ 556 (1049)
+.+||+|.+++++.|||+|||.++++| +..|+++..+.++|+.+.+||+++++||++.||.|++.|+.+...++.+..|
T Consensus 461 iv~hv~P~f~s~ygfL~Srace~is~~-eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sah 539 (970)
T COG5656 461 IVNHVIPAFRSNYGFLKSRACEFISTI-EEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAH 539 (970)
T ss_pred HHHHhhHhhcCcccchHHHHHHHHHHH-HHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhh
Confidence 999999999999999999999999999 4688888899999999999999999999999999999999988789999999
Q ss_pred hHHHHHHHHHHhhhhchhhHHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHhcccCCC----CCCChhHHHHHHHHH
Q 001585 557 LPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADE----DADDPGALAAVGCLR 632 (1049)
Q Consensus 557 l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~----~~~~~~~~~~~~~le 632 (1049)
+|++|++|+.+.++++.+.+..+|+++|+.|++++.|||++++..|+.+|.++..+--.++ +-.+|+.+.+.|+++
T Consensus 540 Vp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~ 619 (970)
T COG5656 540 VPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILR 619 (970)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999876422222 112589999999999
Q ss_pred HHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccchhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhH-hhhH
Q 001585 633 AISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWA-IDFF 711 (1049)
Q Consensus 633 ~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~isp~l~~l~~~l~~~~~~~~-~~~l 711 (1049)
|+.+++.++++.|.++..++..++|++..++.++..+|+.++++++...++..+.++|.||.+|..+.++..+.+ .+|+
T Consensus 620 T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ 699 (970)
T COG5656 620 TIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYS 699 (970)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987655 3899
Q ss_pred hhhHHhhhhHhhcCcccccccCCcchHHHHHHHHHHHhcCCCCCCcccCchhhHHHHHHHhcccC-chhchHHHHHHHHH
Q 001585 712 PNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ-VDHWVEPYLRITVE 790 (1049)
Q Consensus 712 ~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~-~~~~l~~il~~~l~ 790 (1049)
.++.+.|+||+.+|...|. +++.|...++.|.++++.++.....|...+|++++.++++.++. .++|+|-++.++..
T Consensus 700 ee~~~al~nfityG~~ef~--~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vags 777 (970)
T COG5656 700 EEVADALDNFITYGKTEFM--DAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISVAGS 777 (970)
T ss_pred HHHHHHHHHHHHhCccccc--cccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHHHhh
Confidence 9999999999999999998 67889999999999999887665567889999999999999986 67899977777776
Q ss_pred HHHh-hhhhHHHHHHHHHHHHHHhhCHHHHHHHHHhhCccHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHh
Q 001585 791 RLRR-AEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLL 869 (1049)
Q Consensus 791 ~l~~-~~~~~~~~~~l~v~~~~~~~~p~~~l~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~dkKl~~lal~~ll 869 (1049)
.+.. .+.+......+.++.++++++|..++++|++.|++..||..|++..+ +|+++||||++++|+.+++
T Consensus 778 ~l~~~dElg~~sv~aleliinnli~~P~eTLqiLe~qg~l~~FF~~wf~~ip---------kfkrvhdkKLsvlaIltii 848 (970)
T COG5656 778 GLKMIDELGPASVYALELIINNLILRPKETLQILEEQGYLQSFFEKWFSQIP---------KFKRVHDKKLSVLAILTII 848 (970)
T ss_pred hhhccccccchhhhHHHHHHHHHhcChHHHHHHHHHcCcHHHHHHHHHhcCc---------chhhhhhhHhHHHHHHHHH
Confidence 6654 44667788889999999999999999999999999999999999999 9999999999999999999
Q ss_pred ccc-cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHHH
Q 001585 870 ALT-ADQLPGEALGRVFRATLDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRL 948 (1049)
Q Consensus 870 ~~~-~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~ 948 (1049)
..+ ....+...|+++...++.+..+||+|+..|+|+.+++ + ... +| -..+ +++-.|+++
T Consensus 849 ~l~~v~~~~e~lv~nLg~vlv~l~~sLPeAir~rake~d~e---~---f~e---~d----lt~e---y~e~vD~~D---- 908 (970)
T COG5656 849 RLQEVGALPELLVHNLGEVLVALVTSLPEAIRLRAKEKDDE---D---FPE---PD----LTTE---YDECVDASD---- 908 (970)
T ss_pred HhcccccchhhhhhHHHHHHHHHHHhhHHHHHHHHhhcccC---C---CCC---cc----cchh---hhccccccc----
Confidence 887 2333444899999999999999999999997654321 0 100 00 0000 000011111
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhChHHHHHHhcCCCHHHHHHHHHHHH
Q 001585 949 QKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVAQ 1026 (1049)
Q Consensus 949 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~vd~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~ 1026 (1049)
..+. ..+|||+.++|-||+||+|.+|.+++.+++..+++.|+.+++.|++++|+.||.+++
T Consensus 909 ----------------~~et-fileEDplfeT~LDqvdpf~~f~ef~~nLq~~s~~~yekIi~~Lt~s~qdslq~iln 969 (970)
T COG5656 909 ----------------ISET-FILEEDPLFETELDQVDPFGYFSEFLSNLQPASGTYYEKIISTLTDSQQDSLQTILN 969 (970)
T ss_pred ----------------hhhh-hhhcccchhhhhhhhcchHHHHHHHHHhCCCCCchhHHHHHHhcCHHHHHHHHHHhc
Confidence 0011 125788999999999999999999999999999999999999999999999999985
No 3
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6e-104 Score=878.17 Aligned_cols=908 Identities=21% Similarity=0.350 Sum_probs=777.4
Q ss_pred ChHHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCcCCCC
Q 001585 2 DLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (1049)
Q Consensus 2 d~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iRq~Aai~lKn~i~~~W~~~~~~~~~~i 81 (1049)
|+++|.++|.+|++||+++||.||..|++++.++||...|++++.+++.|..+|.+||++|||+|||+|.+..+. +..+
T Consensus 3 ~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~-~~~i 81 (960)
T KOG1992|consen 3 NLETLANYLLQTLSPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDS-PIKI 81 (960)
T ss_pred cHHHHHHHHHhcCCCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCC-cccc
Confidence 478999999999999999999999999999999999999999999999999999999999999999999986553 5679
Q ss_pred ChHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhhhh---hHHHHHHHHHHHHHhcccCC
Q 001585 82 SQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEYQP 158 (1049)
Q Consensus 82 ~~~~k~~ir~~ll~~L~~~~~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~~~ 158 (1049)
.+++|+.||+.++.+|.+++..|+.|++++++.|+++|||+.||+|+|++++.++++ .+.|.|.+.|+++|+||+
T Consensus 82 ~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~-- 159 (960)
T KOG1992|consen 82 IEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRP-- 159 (960)
T ss_pred chhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCc--
Confidence 999999999999999999999999999999999999999999999999999999988 468999999999999975
Q ss_pred CCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhcc---CCc----hhHHHHHHHHHHHHHHhhhccCCcc
Q 001585 159 TDSTSMKGYRIYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIV---NPS----LEVADLIKLICKIFWSSIYLEIPKQ 231 (1049)
Q Consensus 159 t~~~~~~~~r~~~~~~~~~~~~l~~i~~~~~p~Ll~~~~~~~~~~---~~~----~~~~~~~~~~lk~~~~~~~~~lp~~ 231 (1049)
+||+++.+.+++.++..+..++..+|.+...-. .++ .....++.+++|+|++++.+++|++
T Consensus 160 ------------efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEF 227 (960)
T KOG1992|consen 160 ------------EFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEF 227 (960)
T ss_pred ------------ccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 999999999999999999999999998865421 112 1246678899999999999999999
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHH
Q 001585 232 LLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAG 311 (1049)
Q Consensus 232 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~ 311 (1049)
|+ +++..||+.|+++++.+.|. +..|++ +...+.++|..+|++++.+.+||.+ ++ .+++|
T Consensus 228 FE--dnm~~wM~~F~k~l~~~~p~--le~~~e--e~~~l~~lka~ICEi~~LY~~kYeE------ef--------~~fl~ 287 (960)
T KOG1992|consen 228 FE--DNMKTWMGAFHKLLTYDNPL--LESDEE--EATVLDKLKAQICEIFNLYATKYEE------EF--------QPFLP 287 (960)
T ss_pred HH--hhHHHHHHHHHHHHhccCcc--cccCcc--cccHHHHHHHHHHHHHHHHHHhhHH------HH--------HhhHH
Confidence 98 89999999999999998884 233433 3566789999999999999999954 33 45789
Q ss_pred HHHHHHHHHHHHhhCCcccCHHHHHHHHHHHHhhcCCchhhhhc--hhhHHHHHHHHhhhccccChhhHhhhhcCHHHHH
Q 001585 312 KILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLL--QPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYV 389 (1049)
Q Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~--~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi 389 (1049)
+|+..+|+++...+.. ...|-+++.+++||+.+++.+.+..+| ...+.+|++.+++|+++++++|+|.|||||.||+
T Consensus 288 ~fv~~~W~LL~~~s~~-~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYi 366 (960)
T KOG1992|consen 288 DFVTATWNLLVSTSPD-TKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYI 366 (960)
T ss_pred HHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHH
Confidence 9999999999875433 456899999999999999887666677 5679999999999999999999999999999999
Q ss_pred hHhcCcccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhh------
Q 001585 390 RKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKL------ 463 (1049)
Q Consensus 390 ~~~~d~~~d~~s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l------ 463 (1049)
|++.+++ |.+|+|++|.++++.|+++|...+++.+..+++..+++|..+|+. ||+.||.+++++.+++...
T Consensus 367 RRDlEGs-DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~--nWk~kd~aiyL~talaik~~t~~~G 443 (960)
T KOG1992|consen 367 RRDLEGS-DVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSG--NWKKKDRAIYLVTALAIKGQTAKHG 443 (960)
T ss_pred HHhcccC-CcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCc--cccccchhhhhhHHHHhhcchhhcc
Confidence 9999975 799999999999999999998889999999999999999999976 9999999999999999763
Q ss_pred -hcCCCchhhHHHHHHHhhccccCC----CCcchhHHHHHHHHHhhccccCCh---hHHHHHHHHHHhcCCCCCCchHHH
Q 001585 464 -KQTEPYKSELERMLVQHVFPEFSS----PVGHLRAKAAWVAGQYAHINFSDQ---NNFRKALHSVVSGLRDPELPVRVD 535 (1049)
Q Consensus 464 -~~~~~~~~~~~~~l~~~v~p~l~~----~~~~lr~ra~~~l~~~~~~~f~~~---~~~~~~~~~ll~~L~d~~~~V~~~ 535 (1049)
..+++ ..++..|+.++++|+|.+ ++|+||+.++.++ +.|+++ +++..++|.++.+|..+..+|..|
T Consensus 444 vtstn~-lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~-----~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsY 517 (960)
T KOG1992|consen 444 VTSTNE-LVDVVDFFANQILPDLLSPNVNEFPILKADAIKYI-----YTFRNQLGKEHLMALLPRLIRFLEAESRVVHSY 517 (960)
T ss_pred eeeccc-cccHHHHHHHHhhHHhccCccccccchhhccccee-----eeecccCChHHHHHHHHHHHHhccCcchHHHHH
Confidence 23444 458899999999999987 4899999999999 777765 789999999999999999999999
Q ss_pred HHHHHHHHHHhcc-------cccccccchHHHHHHHHHHhhhh---chhhHHHHHHHHHHHccCcccccHHHHHHHHHHH
Q 001585 536 SVFALRSFVEACR-------DLNEIRPILPQLLDEFFKLMNEV---ENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAA 605 (1049)
Q Consensus 536 Aa~AL~~~~~~~~-------~~~~l~p~l~~il~~L~~ll~~~---~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~ 605 (1049)
||.|++.++..++ .++.+.||+..++..|++.+... +++.++.++..++....+.+.|+++.++.+|.+.
T Consensus 518 AA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Ltei 597 (960)
T KOG1992|consen 518 AAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEI 597 (960)
T ss_pred HHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHH
Confidence 9999999987664 46789999999999999877644 4455666666666777888999999999999999
Q ss_pred HHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhc-CChHHHHHHHhhHHHHHHHHcccchhhHHHHHHHHHHHHhhc
Q 001585 606 FWRCMNTAEADEDADDPGALAAVGCLRAISTILESVS-RLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFF 684 (1049)
Q Consensus 606 ~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~-~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~l~~~ 684 (1049)
+++..++++ ++.+.|+++|+++.+++..+ .+|.....++..++|+++.+|++|..+|++|+|++++.++..
T Consensus 598 v~~v~KNPs--------~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~ 669 (960)
T KOG1992|consen 598 VEEVSKNPS--------NPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEH 669 (960)
T ss_pred HHHHhcCCC--------CchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888777544 67899999999999999984 688899999999999999999999999999999999999987
Q ss_pred C-CCCCHHHHHHHHHHHHHHhhhH-hhhHhhhHHhhhhHhhcCcccccccCCcchHHHHHHHHHHHhcCCCCCCcccCch
Q 001585 685 S-PTISLEMWSLWPLMMEALADWA-IDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPA 762 (1049)
Q Consensus 685 ~-~~isp~l~~l~~~l~~~~~~~~-~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~~l~~~~~~~~~~~~a 762 (1049)
+ +++++.+|.+||.++.-- -|. .++++.++++|.+|+..|+..+.+. +.+..+++++++++.++.++. .|
T Consensus 670 ~~~~ip~~~~~l~~~lLsp~-lW~r~gNipalvrLl~aflk~g~~~~~~~---~~l~~iLGifqkLiaSka~Dh----~G 741 (960)
T KOG1992|consen 670 SSGTIPDSYSPLFPPLLSPN-LWKRSGNIPALVRLLQAFLKTGSQIVEAA---DKLSGILGIFQKLIASKANDH----HG 741 (960)
T ss_pred cCCCCchhHHHHHHHhcCHH-HHhhcCCcHHHHHHHHHHHhcCchhhccc---ccchhHHHHHHHHhcCcccch----hH
Confidence 6 568899999999887652 255 6899999999999999999988743 568889999999999997776 49
Q ss_pred hhHHHHHHHhccc-CchhchHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHhhCHHHHHHHHHhh--CccHHHH-HHHH
Q 001585 763 PKLIEVVFQNCKG-QVDHWVEPYLRITVERLRRAEKS-YLKCLLVQVIADALYYNSSLTLSILHKL--GVATEVF-NLWF 837 (1049)
Q Consensus 763 ~~ll~~ii~~~~~-~~~~~l~~il~~~l~~l~~~~~~-~~~~~~l~v~~~~~~~~p~~~l~~L~~~--~~~~~~~-~~w~ 837 (1049)
+.|+.+|+.+.+. .+.||+..|+..+++|++++++. +++..++.+...++-++.....+.++.+ |.+.+++ +.|+
T Consensus 742 F~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~ik~~~~~l~e~~d~IQ~~~fg~l~e~~ii 821 (960)
T KOG1992|consen 742 FYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFTIKKGGLMLAEVIDGIQPGMFGMLLENFII 821 (960)
T ss_pred HHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHHHHHHhcc
Confidence 9999999999875 47899999999999999998754 5555556666677777788888888865 5666666 6677
Q ss_pred HHHHHHHhhccccCcccchhhHHHHHHHHHHhccccCCCChh---hHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCc
Q 001585 838 QMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGE---ALGRVFRATLDLLVAYKEQVAEAAKDEEAEDDDDM 914 (1049)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~dkKl~~lal~~ll~~~~~~l~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~ 914 (1049)
..++ ++.+..+||++.+|.++++...+..+.+. .|+.++.+++.+++.- ..+. -. |++
T Consensus 822 ~~l~---------~i~~~~~rk~~avg~~~l~~e~~~~~d~~y~~l~~~ll~sii~lfe~p---~~~~-----~~--~e~ 882 (960)
T KOG1992|consen 822 PELP---------KIILRVDRKIMAVGATGLLTETPELLDQKYAKLWGPLLFSIIVLFELP---SERT-----VL--DEE 882 (960)
T ss_pred ccch---------hhhhhhhHHHHHHHHhhhhhhcHHhhhHHHHhhhhhHHHHHHHHHhCC---hhhh-----cc--Cch
Confidence 7778 99999999999999999999887766333 8999999999998841 1111 00 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCC-chHHHHHH
Q 001585 915 DGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDEV-DPFVFFVD 993 (1049)
Q Consensus 915 ~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~v-d~~~~~~~ 993 (1049)
+ +. ++.+++.+|... |.+|+.++++. .||+.++ |++.|+.+
T Consensus 883 ---------~-------e~-~~i~e~~~f~~~-F~~L~~a~~k~--------------------~Dpl~~i~~~k~y~a~ 924 (960)
T KOG1992|consen 883 ---------E-------EM-AEIEEDPGFQAA-FSRLAYAGKKP--------------------HDPLAQIKDPKQYLAQ 924 (960)
T ss_pred ---------h-------hh-hhhhcccchhHH-HHHHHcCCCCC--------------------CCchhhhhhHHHHHHH
Confidence 0 00 012223477777 78888765443 2799997 99999999
Q ss_pred HHHHHHhhChHHHHHHhc-CCCHHHHHHHHHHHHH
Q 001585 994 TIKVMQASDPLRFQNLTQ-TLEFQYQALANGVAQH 1027 (1049)
Q Consensus 994 ~l~~~~~~~~~~~~~l~~-~l~~~~~~~l~~~~~~ 1027 (1049)
.+..+.+..|++|.++++ +|++|-|+.||++++.
T Consensus 925 sl~~~~~~~~g~~~~~i~~~l~~e~q~~Lq~~~~~ 959 (960)
T KOG1992|consen 925 SLNKLSTASPGRFPQTISTSLPPENQTYLQSYLQA 959 (960)
T ss_pred HHHHHhhcCCCCchhhhcccCCHHHHHHHHHHhhc
Confidence 999999999999977777 5999999999999874
No 4
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-78 Score=668.03 Aligned_cols=903 Identities=19% Similarity=0.285 Sum_probs=666.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCcCCCCChHH
Q 001585 6 LALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVD 85 (1049)
Q Consensus 6 l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iRq~Aai~lKn~i~~~W~~~~~~~~~~i~~~~ 85 (1049)
++++|+++.|||..++|.||++|++|+++|||...|..|+.+.+.+..+|++|+|||||.|.+||++. ....+|+|+
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~---~~~sl~~EE 78 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRN---TKMSLPPEE 78 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcC---CcccCCHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999975 345799999
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhhhh-------hHHHHHHHHHHHHHhcccCC
Q 001585 86 KDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ-------QVYGALFVLRILSRKYEYQP 158 (1049)
Q Consensus 86 k~~ir~~ll~~L~~~~~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~-------~~~~~L~~L~~i~k~~~~~~ 158 (1049)
|+.||.+++....++++++..|+|.++++|||.|||.+||+|++++.+.+++. ..++.|.+|++++|.+..
T Consensus 79 K~~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat-- 156 (978)
T KOG1993|consen 79 KDFIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALAT-- 156 (978)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH--
Confidence 99999999999999999999999999999999999999999999999999876 469999999999999931
Q ss_pred CCccccccccccccccccccchHHHHHHHHHHHHHHHHHHH--------hhccCCc--hhHHHHHHHHHHHHHHhhhccC
Q 001585 159 TDSTSMKGYRIYEFKSDEERTPVYRIVEETFHHLLNIFNRL--------VQIVNPS--LEVADLIKLICKIFWSSIYLEI 228 (1049)
Q Consensus 159 t~~~~~~~~r~~~~~~~~~~~~l~~i~~~~~p~Ll~~~~~~--------~~~~~~~--~~~~~~~~~~lk~~~~~~~~~l 228 (1049)
-|-...|+.+.+.++.+++.+..++-+. ..+.... ..+.+..++.+|.++.++..+.
T Consensus 157 -------------~RL~a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~ 223 (978)
T KOG1993|consen 157 -------------KRLLADRKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGF 223 (978)
T ss_pred -------------hHHhhhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0112345666666666666443332221 1111101 2356677889999999987644
Q ss_pred CcccCC--hhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcc-hHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHH
Q 001585 229 PKQLLD--PNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWG-WWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMF 305 (1049)
Q Consensus 229 p~~~~~--~~~l~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~-~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f 305 (1049)
-..... .+.+..++......+..... ..... ...+ +.|.-+...+.+..++++. |.. ...
T Consensus 224 ~~P~kse~~eRl~~F~e~~~~~~~~~~s----~~~~~--vk~di~ek~~i~l~K~l~~l~~rh--pfs--F~~------- 286 (978)
T KOG1993|consen 224 QNPSKSEFFERLLQFLELHQRKLLSSLS----TGTQS--VKSDILEKFCIKLMKVLAFLFNRH--PFS--FSF------- 286 (978)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhcc----cccch--hhhHHHHHHHHHHHHHHHHHhcCC--Ccc--ccc-------
Confidence 322111 14455555543332222111 11100 0000 1122222334445555542 210 000
Q ss_pred HHhhHHHHHHHHHHHHHHh-------hCCcccCHHHHHHHHHHHHhhcCCc-----------------------hhh-hh
Q 001585 306 QKNYAGKILECHLNLLNRI-------RVGGYLPDRVTNLILQYLSNSISKN-----------------------SMY-NL 354 (1049)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~l~fl~~~~~~~-----------------------~~~-~~ 354 (1049)
...+|..+..+...+... .+..-.-++...+++..+..++..+ +.+ +.
T Consensus 287 -~~~~~~~l~f~~~yIf~~~~~l~~~~~~~~~fe~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sF 365 (978)
T KOG1993|consen 287 -YSPCPVKLEFSIDYIFDEYDFLGQISGHLSSFEEFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSF 365 (978)
T ss_pred -ccccceeeehhhhhhhcccchhcccccccccHHHHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHh
Confidence 001112222221111110 0000011344445554444332110 011 12
Q ss_pred c-hhhHHHHHHHHhhhccccChhhHhhhhcCHHHHHhHhcCcccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHh
Q 001585 355 L-QPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIF 433 (1049)
Q Consensus 355 ~-~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l 433 (1049)
+ .+.+..||..+|.+|+.++++|+|.|.+||++|+.++..+ +-.|+.|+||+.++.++.+.|++-..++++..+.+..
T Consensus 366 l~~~rIt~lcd~Lvt~YflLt~~eLEeW~~dPE~~~~Eq~~~-dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~ 444 (978)
T KOG1993|consen 366 LTDNRITNLCDLLVTHYFLLTEEELEEWTQDPEGWVLEQSGG-DWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQ 444 (978)
T ss_pred cchHHHHHHHHHHHHHHHhcCHHHHHHHhcChHHhhhhcccc-cceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2 4568899999999999999999999999999999998643 2378999999999999999998877788877776655
Q ss_pred cccCCCC-cCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCC---CcchhHHHHHHHHHhhccccC
Q 001585 434 KRYDETP-VEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSP---VGHLRAKAAWVAGQYAHINFS 509 (1049)
Q Consensus 434 ~~~~~~~-~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~---~~~lr~ra~~~l~~~~~~~f~ 509 (1049)
+.....+ .+.+....|||++.++|..+..+.+. .+|..|+.+.++|++... ..++|+|.+|++|+|.+..++
T Consensus 445 ~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~----~dF~~Wl~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~ 520 (978)
T KOG1993|consen 445 ELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNI----LDFDKWLQEALLPELANDHGNSRIIRRRVAWILGQWVSVQQK 520 (978)
T ss_pred hcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHHHHhhCHHhhhcccchhHHHHHHHHHHhhhhheech
Confidence 4421111 23346889999999999999998764 478899999999999854 468999999999999987654
Q ss_pred ChhHHHHHHHHHHhcCCCC-CCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHhhhhchh----hHHHHHHHH
Q 001585 510 DQNNFRKALHSVVSGLRDP-ELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEVENE----DLVFTLETI 583 (1049)
Q Consensus 510 ~~~~~~~~~~~ll~~L~d~-~~~V~~~Aa~AL~~~~~~~~-~~~~l~p~l~~il~~L~~ll~~~~~~----~l~~~l~~i 583 (1049)
. +....+|.++++.++|. |.+||++|+.+++..+++++ .++.+.||++.+...+++++..++.. .+..+|.++
T Consensus 521 ~-e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~l 599 (978)
T KOG1993|consen 521 L-ELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTL 599 (978)
T ss_pred H-hHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4 67789999999999987 89999999999999999998 78899999999999999999887654 378899999
Q ss_pred HHHccCcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHc
Q 001585 584 VDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRML 663 (1049)
Q Consensus 584 v~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l 663 (1049)
+++.++.|.||+..+++.|. .+|+.+ + +.++.++.++.++..++++++..+. .+.+.++|+|+.+.
T Consensus 600 I~r~~e~I~P~~~~ivq~lp-~LWe~s---~-------~e~lLr~alL~~L~~lV~alg~qS~---~~~~fL~pVIel~~ 665 (978)
T KOG1993|consen 600 IERVSEHIAPYASTIVQYLP-LLWEES---E-------EEPLLRCALLATLRNLVNALGAQSF---EFYPFLYPVIELST 665 (978)
T ss_pred HHHHHHhhhHHHHHHHHHHH-HHHhhh---c-------cCcHHHHHHHHHHHHHHHHhccCCc---cchHHHHHHHHHhc
Confidence 99999999999999998876 444443 3 2467888999999999999985442 36789999999998
Q ss_pred ccc---hhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhHhhhHhhhHHhhhhHhhcCcccccccCCcchHHH
Q 001585 664 TTD---GQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQS 740 (1049)
Q Consensus 664 ~~~---~~~~~~~~l~ll~~l~~~~~~isp~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~ 740 (1049)
+.. ...+.|++++||..++.+.+.++|.+..+||++...++ ..+++++.++.++++|+..+...|++ .|...
T Consensus 666 D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE-~ste~L~t~l~Ii~sYilLd~~~fl~----~y~~~ 740 (978)
T KOG1993|consen 666 DPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIE-QSTENLPTVLMIISSYILLDNTVFLN----DYAFG 740 (978)
T ss_pred CCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHhhccHHHHH----HHHHH
Confidence 743 34789999999999999999999999999999998876 56889999999999999999998986 68899
Q ss_pred HHHHHHHHhcCCCCCCcccCchhhHHHHHHHhcccCch-hchHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHhhCHHH
Q 001585 741 LWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVD-HWVEPYLRITVERLR-RAEKSYLKCLLVQVIADALYYNSSL 818 (1049)
Q Consensus 741 i~~i~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~-~~l~~il~~~l~~l~-~~~~~~~~~~~l~v~~~~~~~~p~~ 818 (1049)
+++.+.+++.+-+. ......+++++.++..-+ .+. -+.++++..++..+. +.+.+++...++.|++|..+.||+.
T Consensus 741 i~k~~~~~l~dvr~--egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~ 817 (978)
T KOG1993|consen 741 IFKKLNDLLDDVRN--EGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSL 817 (978)
T ss_pred HHHHHHHHHHHhhH--HHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHH
Confidence 99988888865432 224567788877776533 122 244556666665553 4668999999999999999999999
Q ss_pred HHHHHHhhC---c-cHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHhccccCCCChhhHHHHHHHHHHHHHH
Q 001585 819 TLSILHKLG---V-ATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGEALGRVFRATLDLLVA 894 (1049)
Q Consensus 819 ~l~~L~~~~---~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~dkKl~~lal~~ll~~~~~~l~~~~~~~~~~~~~~ll~~ 894 (1049)
++.++.+.+ . ...++..|+..++ ++..+.+||+.++|+++||..+.+.+.+ .++.|++.++++|.+
T Consensus 818 ~msvlqt~~~~d~~~~~li~~WI~~~~---------~I~~~k~rKl~~LalsSll~t~~~~ila-~~~~I~nl~~e~L~e 887 (978)
T KOG1993|consen 818 FMSVLQTKNTYDILIAMLIGNWILLFD---------HINHPKDRKLNTLALSSLLRTNNPDILA-VLDSIMNLWFEVLSE 887 (978)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHcc---------cCCCHHHhhHHHHHHHHHhccCCcHHHH-HHhHHHHHHHHHHHH
Confidence 999998875 3 3578899999999 9999999999999999999886553322 578889999999884
Q ss_pred HHHHHHHHHhhhhccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCC
Q 001585 895 YKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSD 974 (1049)
Q Consensus 895 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 974 (1049)
+.|. + .++..++.. .||- .+-+.-+|+ ..+++.+-.+|
T Consensus 888 ----V~ed---~----~g~~~~~~~---~d~~----~e~~~~~d~-tteq~~r~k~l----------------------- 925 (978)
T KOG1993|consen 888 ----VMED---A----NGDATDYHL---NDDL----SEQGVYEDE-TTEQDTRHKQL----------------------- 925 (978)
T ss_pred ----Hhhh---c----cCchHHHHh---hhhh----hccccCCch-hhHHHHHHHHH-----------------------
Confidence 3322 1 122211110 0110 000111111 12233333322
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHhhCh-HHHHHHhcCCCHHHHHHHHHHHH
Q 001585 975 DEELQSPIDEVDPFVFFVDTIKVMQASDP-LRFQNLTQTLEFQYQALANGVAQ 1026 (1049)
Q Consensus 975 ~~~~~~pl~~vd~~~~~~~~l~~~~~~~~-~~~~~l~~~l~~~~~~~l~~~~~ 1026 (1049)
...||++.|+..+|+.+.|..++.+.+ ++|++.++..+|+-.+++|.+++
T Consensus 926 --~lkDPVh~vsl~~fi~~~l~~~q~~lG~q~yqq~l~tVnp~lleqlq~fl~ 976 (978)
T KOG1993|consen 926 --LLKDPVHSVSLRSFIISVLMFLQDALGEQRYQQYLSTVNPELLEQLQMFLS 976 (978)
T ss_pred --hccCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHHc
Confidence 124899999999999999999998776 58999999999999999999875
No 5
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=100.00 E-value=8.9e-74 Score=643.92 Aligned_cols=913 Identities=18% Similarity=0.273 Sum_probs=675.1
Q ss_pred CChHHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCC-CcCC
Q 001585 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEP-NEQQ 79 (1049)
Q Consensus 1 Md~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iRq~Aai~lKn~i~~~W~~~~~-~~~~ 79 (1049)
|+.+.|..+|.+++|||+++|.+||.+|++++..+||..+|.+++.++..+.+.||.|.|+||++|.+||++..+ ++.+
T Consensus 1 ~~~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~ 80 (1005)
T KOG2274|consen 1 QVKQAIIELLSGSLSADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYP 80 (1005)
T ss_pred CcHHHHHHHHHhhcCCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCC
Confidence 566789999999999999999999999999999999999999999999889999999999999999999998665 3333
Q ss_pred C-CChHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhhhh---hHHHHHHHHHHHHHhcc
Q 001585 80 K-ISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYE 155 (1049)
Q Consensus 80 ~-i~~~~k~~ir~~ll~~L~~~~~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~ 155 (1049)
. .+++.|..||+.|+.++..++++||+..+++|+.||+.|||++||++++.+..+++++ .++|+|.+|.+++.+.-
T Consensus 81 ~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~ 160 (1005)
T KOG2274|consen 81 LIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVD 160 (1005)
T ss_pred CcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHH
Confidence 3 7899999999999999999999999999999999999999999999999999999966 68999999999998771
Q ss_pred cCCCCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHhhhccCC------
Q 001585 156 YQPTDSTSMKGYRIYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIP------ 229 (1049)
Q Consensus 156 ~~~t~~~~~~~~r~~~~~~~~~~~~l~~i~~~~~p~Ll~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~lp------ 229 (1049)
++ .+..+.+...|....+|.-... ++. ...++...+|.|++|..+--+
T Consensus 161 ---~e-------------------e~~~~~~~~l~~m~~~f~~~~~---~s~-~~~~~aa~~~lf~sc~~li~~~~e~~~ 214 (1005)
T KOG2274|consen 161 ---VE-------------------EMFFVGPVSLAEMYRIFALTIV---YSI-ITRLGAARGKLFTSCLTLITNVEEVWA 214 (1005)
T ss_pred ---HH-------------------HHhcccccchhhhhhhhhhccc---cch-hHHHHhhhhHHHHHHHHHHhHHHHHHH
Confidence 11 1112233344444444443211 111 111111225777776542100
Q ss_pred ----cccCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHH
Q 001585 230 ----KQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMF 305 (1049)
Q Consensus 230 ----~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f 305 (1049)
.++. +.+.+||..+...++...+ + .|..+..+.++++.+++.|.. +.
T Consensus 215 ~~~~~~~s--~~l~~~~~~l~h~l~~~~g--------~------~~~~~~eilk~~t~l~~nfp~--~~----------- 265 (1005)
T KOG2274|consen 215 EHVKVFLS--QILNQFMDILEHPLQRNDG--------S------DFSLRMEILKCLTQLVENFPS--LI----------- 265 (1005)
T ss_pred HHHHHHHH--HHHHHHHHHHhhhhccccc--------c------hHHHHHHHHHHHHHHHHhhHH--hh-----------
Confidence 1111 4566777777666655321 1 167788899999999998733 21
Q ss_pred HHhhHHHHHHHHHHHHHHh-----------hC----C-------cccCHHHHHHHHHHHHhhcCCchhhhhchhhHHHHH
Q 001585 306 QKNYAGKILECHLNLLNRI-----------RV----G-------GYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLL 363 (1049)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~-----------~~----~-------~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li 363 (1049)
.+++-.++..+|+.+.+. .+ . .+..+.++.++++|++.+++.....+.++..++.++
T Consensus 266 -~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI 344 (1005)
T KOG2274|consen 266 -NPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELI 344 (1005)
T ss_pred -hHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 223333444455544431 00 0 112347788999999999998887777777888888
Q ss_pred HHHhhhccccChhhHhhhhcCHHHHHhHhcCcccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCC--Cc
Q 001585 364 FEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDET--PV 441 (1049)
Q Consensus 364 ~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~--~~ 441 (1049)
..++ -|++++++.++.|.+||++||.++++. ++.|.++.+++..+...++...+.++.......++...++ .+
T Consensus 345 ~~~v-~y~Qlseeqie~w~sD~~~fV~dEd~~----~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~ 419 (1005)
T KOG2274|consen 345 YQLV-AYLQLSEEQIEVWTSDVNQFVADEDDG----YTARISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFN 419 (1005)
T ss_pred HHHH-HHHHhhHHHHHHHhccHHHhhccCCCC----chhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhc
Confidence 8766 678999999999999999999988653 7889999999999999999888877777755555443221 11
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccC-CCCcchhHHHHHHHHHhhccccCChhHHHHHHHH
Q 001585 442 EYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS-SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHS 520 (1049)
Q Consensus 442 ~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~-~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ 520 (1049)
+..||+..++++.+.+....+ +..++.-..+...+...+. +..|+|-.||+|++++|++...-+++.+..++..
T Consensus 420 ~~~~wk~qea~l~a~~~~~~~-----~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~ 494 (1005)
T KOG2274|consen 420 NESWWKIQEALLVAAESVRID-----DANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNA 494 (1005)
T ss_pred chHHHHHHHHHHHHHhhcccC-----cchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 224899999999998877622 2234444555555555555 4578888899999999987644466788889999
Q ss_pred HHhcCC-CCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHH--ccCcccccH-H
Q 001585 521 VVSGLR-DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDK--FGEEMAPYA-L 596 (1049)
Q Consensus 521 ll~~L~-d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~--~~~~i~p~~-~ 596 (1049)
.++.+. +...+||+.|++|+..+| ....+.|++|.++.+|.++....+.+.+..+|+++... +..+.+--. .
T Consensus 495 ~v~~l~~~~~~~~ki~a~~~~~~~~----~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~s 570 (1005)
T KOG2274|consen 495 TVNALTMDVPPPVKISAVRAFCGYC----KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMES 570 (1005)
T ss_pred HHHhhccCCCCchhHHHHHHHHhcc----CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhc
Confidence 999887 667789999999999888 36789999999999999999999988888888877543 333322111 1
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccch----hhHHH
Q 001585 597 GLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG----QEVFE 672 (1049)
Q Consensus 597 ~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~~----~~~~~ 672 (1049)
.++......|.. ..+|| ..+....+++..+++. .+++..+...++|.+-.+++... .....
T Consensus 571 kI~P~~i~lF~k----~s~DP-------~V~~~~qd~f~el~q~----~~~~g~m~e~~iPslisil~~~~~~~~~~l~~ 635 (1005)
T KOG2274|consen 571 KICPLTINLFLK----YSEDP-------QVASLAQDLFEELLQI----AANYGPMQERLIPSLISVLQLNADKAPAGLCA 635 (1005)
T ss_pred chhHHHHHHHHH----hcCCc-------hHHHHHHHHHHHHHHH----HHhhcchHHHHHHHHHHHHcCcccccCchhhH
Confidence 233333333433 22344 2333344455555543 44566788999999999998655 57888
Q ss_pred HHHHHHHHHhhcCC-CCCHHH-HHHHHHHHHHH-hhhHhhhHhhhHHhhhhHhhcCcccccccCCcch--HHHHHHHHHH
Q 001585 673 EVLEIVSYMTFFSP-TISLEM-WSLWPLMMEAL-ADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDY--QQSLWSMVSS 747 (1049)
Q Consensus 673 ~~l~ll~~l~~~~~-~isp~l-~~l~~~l~~~~-~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~--~~~i~~i~~~ 747 (1049)
-++++++.++++.| +++..+ -.+||.+++|. ++++.+.++..-.||++||..+++++++|++.+. +..++++..+
T Consensus 636 ~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sq 715 (1005)
T KOG2274|consen 636 IAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQ 715 (1005)
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHH
Confidence 99999999999874 455544 47899999994 6666788999999999999999999999976543 4589999999
Q ss_pred HhcCCCCCCcccCchhhHHHHHHHhcccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhCHHHHHHHHHhh-
Q 001585 748 IMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKL- 826 (1049)
Q Consensus 748 ~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~l~~l~~~~~~~~~~~~l~v~~~~~~~~p~~~l~~L~~~- 826 (1049)
+|+.. .+++.+.++|+++.+++.+.+..++|-+..|+.+++.||+++++..+.++++.||+.+.+.+++.++++|.+.
T Consensus 716 LLdp~-~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~~~l~FL~Slp 794 (1005)
T KOG2274|consen 716 LLDPE-TSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLDQLLNFLSSLP 794 (1005)
T ss_pred HcCCc-cchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence 99754 6777788999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -----CccHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHhccc----cCCCChh------------------
Q 001585 827 -----GVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALT----ADQLPGE------------------ 879 (1049)
Q Consensus 827 -----~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~dkKl~~lal~~ll~~~----~~~l~~~------------------ 879 (1049)
.+++.++..|++++. -|.|.|++|+.+.++|++|... .+.|...
T Consensus 795 ~~~g~~AlefVMteW~srqh---------l~~g~ye~kv~i~alc~al~~~~~~ddkrLq~V~VkGelI~s~d~~I~TRS 865 (1005)
T KOG2274|consen 795 GPTGEPALEFVMTEWTSRQH---------LYFGEYEGKVSIKALCKALQHLISTDDKRLQKVRVKGELIYSMDEGIITRS 865 (1005)
T ss_pred CCCCCcHHHHHHHHHHhhhh---------hhhhhhhchhhHHHHHHHHHhhhccCChhhceeeECCeecccCCCCeeehh
Confidence 358999999999998 8999999999999999988653 2222211
Q ss_pred -------hHH--HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHH
Q 001585 880 -------ALG--RVFRATLDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQK 950 (1049)
Q Consensus 880 -------~~~--~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~ 950 (1049)
.|. .++.+++++|. .++.+-.|++... ++...++..|+.+|+|||.+++++ ++ |+-. .+.
T Consensus 866 ka~k~Perwt~IPl~vKIlkLli---~Els~~~e~~~~~-qa~p~e~sqdd~nD~wdD~~~~~e---~~-d~l~---g~~ 934 (1005)
T KOG2274|consen 866 KAKKNPERWTNIPLLVKILKLLI---SELSNVSEQNAAR-QAIPSEWSQDDGNDMWDDQPEEEE---EE-DGLA---GQL 934 (1005)
T ss_pred hhccCchheeeccHHHHHHHHHH---HHHHHHhhccccc-ccCCchhhhhccccccccCCcCcc---cc-cchh---hhh
Confidence 121 24456667776 4676665553332 333334454455667765543321 11 1111 111
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCC-CCCCCCCCCCchHHHHHHHHHHHHhhChHHHHHHhcCCCHHHHHHHHHHH
Q 001585 951 LAAQARAFRPHDEDDDDSDDDFSDD-EELQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVA 1025 (1049)
Q Consensus 951 l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pl~~vd~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~ 1025 (1049)
+... + +.|.|..+||++|| +...||++++|+..|+.+||.++.+.+...|..+.++|++++|..|+.+.
T Consensus 935 lsD~---l---~~d~D~~eDDe~dd~~~lkd~~yq~dlq~yL~dFl~efa~~d~~~f~~~~~~L~d~ER~VL~~i~ 1004 (1005)
T KOG2274|consen 935 LSDI---L---ETDVDEYEDDEEDDPDLLKDPLYQIDLQAYLTDFLKEFASQDRPCFIMFYEHLTDNERRVLQTIL 1004 (1005)
T ss_pred HHHH---H---hccccccccccccchhhccCcchhhhHHHHHHHHHHHHHhcCCcchhHHHhccCHHHHHHHHHhh
Confidence 1111 1 11222222323333 45689999999999999999999999999999999999999999998864
No 6
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.4e-59 Score=530.20 Aligned_cols=902 Identities=18% Similarity=0.215 Sum_probs=615.2
Q ss_pred CChHHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCcCCC
Q 001585 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQK 80 (1049)
Q Consensus 1 Md~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iRq~Aai~lKn~i~~~W~~~~~~~~~~ 80 (1049)
|+.-.+...+....|+|+..+|.||++|++|++++||+..|+.|.++...+.++|++|+|+|||+|++||+... ...
T Consensus 1 M~~~~vv~~~~~aqs~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~---~~~ 77 (947)
T COG5657 1 MEDLPVVKQLDLAQSPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREEN---GNS 77 (947)
T ss_pred CCchHHHHHHHhhcCCCCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhc---ccC
Confidence 66556677788889999999999999999999999999999999999989999999999999999999999643 345
Q ss_pred CChHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhhhh---hHHHHHHHHHHHHHhcccC
Q 001585 81 ISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEYQ 157 (1049)
Q Consensus 81 i~~~~k~~ir~~ll~~L~~~~~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~~ 157 (1049)
+.++++..||..++..+.+++..+..|+|.|++.||+.|||.+||+|++++.+++++. ...+.|.++++|+|++|.
T Consensus 78 i~p~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~- 156 (947)
T COG5657 78 ILPDENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRR- 156 (947)
T ss_pred CCCccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhh-
Confidence 7778888999999999999999999999999999999999999999999999999986 458999999999999952
Q ss_pred CCCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccC----Cc---hhHHHHHHHHHHHHHHhhhccCCc
Q 001585 158 PTDSTSMKGYRIYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVN----PS---LEVADLIKLICKIFWSSIYLEIPK 230 (1049)
Q Consensus 158 ~t~~~~~~~~r~~~~~~~~~~~~l~~i~~~~~p~Ll~~~~~~~~~~~----~~---~~~~~~~~~~lk~~~~~~~~~lp~ 230 (1049)
.+|+++ .+.++.+.+.+.+..+.-+....++ .. .....+....+|.|+...+++.|+
T Consensus 157 -------------l~Rsd~---lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi~e 220 (947)
T COG5657 157 -------------LFRSDA---LFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDIPE 220 (947)
T ss_pred -------------hhccHH---HHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCChhH
Confidence 445432 3444554444444444333222111 01 112333344556666666788898
Q ss_pred ccCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhH
Q 001585 231 QLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYA 310 (1049)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~ 310 (1049)
+++ ++++.||..|...++...|. ...|. -+...+.|+|..+|.+++.+-.+|.+ -+.++.
T Consensus 221 FfE--d~l~~~m~~F~klls~~~~~--lq~~~--le~~~~~~l~~~i~e~f~ly~t~yp~--------------~it~li 280 (947)
T COG5657 221 FFE--DNLDKFMEHFCKLLSYSNPV--LQKDC--LEDCVYFKLKGSICEIFNLYTTKYPE--------------VITYLI 280 (947)
T ss_pred HHH--HHHHHHHHHHHHHHhhcchh--hhhhh--cccceeeeecccHHHHHHHHhhccHH--------------HhhHHH
Confidence 888 89999999999999975441 11111 11245678899999999999888754 123356
Q ss_pred HHHHHHHHHHHHHhhCCcccCHHHHHHHHHHHHhhcC--Cchhhhhch----hhHHHHHHHHhhhccccChhhHhhhhcC
Q 001585 311 GKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSIS--KNSMYNLLQ----PRLDVLLFEIVFPLMCFNDNDQKLWDED 384 (1049)
Q Consensus 311 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~--~~~~~~~~~----~~l~~li~~~i~p~l~l~~~d~e~we~D 384 (1049)
-.+++.+|+++....+ .+..|.++..++.++..+.+ .+++...+. ..+.+++..++.|+++++++|+|.|++|
T Consensus 281 ~dfv~~vw~~lttit~-~~~~d~Lv~k~l~~l~~v~k~~irk~~e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~dd 359 (947)
T COG5657 281 YDFVEIVWNLLTTITR-PYIRDYLVSKSLTVLINVIKYPIRKTAEVLSNVSENLINNLVDLLILPNLILREEDLEEWEDD 359 (947)
T ss_pred HHHHHHHHHHHHhhcC-ccccchhhhhHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHhhhccccCcccccccccC
Confidence 6788899999988654 36678899999999999988 455665553 3678899999999999999999999999
Q ss_pred HHHHHhHhcCcccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhh
Q 001585 385 PHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLK 464 (1049)
Q Consensus 385 p~efi~~~~d~~~d~~s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~ 464 (1049)
|.||+|+..... -.+..|.|+++.+..+-..+++. +.+++..++.++.+.|...+..+.+++++...|...+.+.
T Consensus 360 p~eyire~s~~d-ye~~vr~~~~~~l~~~f~~~~~i----~~~~~~~~ie~~~t~P~~~d~~~~~~a~~a~~g~g~~av~ 434 (947)
T COG5657 360 PLEYIREQSKTD-YEVNVRPCIENELKDLFDVFGRI----AVGHELTVIESEATTPNILDEARQLFAAYASFGLGVEAVN 434 (947)
T ss_pred HHHHHHhhcccc-chhhhhHHHHHHHHHHHHHHhhH----hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999766532 24667999999999998888743 4455566666666666434467888999888886666554
Q ss_pred cCCCchhhHHHHHHHhhccccCCC----Cc-chhHHHHHHHHHhhccccCCh--hHHHHHHHHHHhcCCCC-CCchHHHH
Q 001585 465 QTEPYKSELERMLVQHVFPEFSSP----VG-HLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGLRDP-ELPVRVDS 536 (1049)
Q Consensus 465 ~~~~~~~~~~~~l~~~v~p~l~~~----~~-~lr~ra~~~l~~~~~~~f~~~--~~~~~~~~~ll~~L~d~-~~~V~~~A 536 (1049)
. ..++..|+.+...|++.+| ++ ++|+|+..++..|.... +.+ +..--.++..+..+.+. +.+|-.+.
T Consensus 435 ~----~~~~v~~~~~~~~pd~~s~~~~~~~ri~~~~i~~i~~~r~~l~-~~~~~~~~fl~~~~F~~yt~~~id~~~lLT~ 509 (947)
T COG5657 435 R----MVDFVKFLGSIIYPDLLSPNEIIHLRILRSRIAYILTFRNQLD-SSELSESKFLASQFFVNYTTACIDAVVLLTT 509 (947)
T ss_pred H----HHHHHHHHHHhcCccccCcccCceeEEehhccchheechhhhh-hhhhhhHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3 3578899999999999875 33 56666666665554322 222 11111222233344332 23344445
Q ss_pred HHHHHHHHHhccccc-ccccchHHHHHHHHHHhhhhch----hhHHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHh
Q 001585 537 VFALRSFVEACRDLN-EIRPILPQLLDEFFKLMNEVEN----EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMN 611 (1049)
Q Consensus 537 a~AL~~~~~~~~~~~-~l~p~l~~il~~L~~ll~~~~~----~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~ 611 (1049)
..|....++.+.... ...+.+++++-.+++++...+. +.++.++.+++..-++.++|.+.++++.|.+. |..|
T Consensus 510 ~~a~~t~~~~~n~~~~~~~~~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~l-v~~~- 587 (947)
T COG5657 510 REAYSTIFDDWNFSVCSKIGLLENLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQLLDNL-VEIN- 587 (947)
T ss_pred HHHHHHHHHhcccccccccccHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHH-HHHH-
Confidence 555555666654222 3444455555555555554433 34778888888888999999888888887743 3333
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHHhhcC-ChHHHHHHHhhHHHHHHHHcccchhhHHHHHHHHHHHHhhcCC-C-C
Q 001585 612 TAEADEDADDPGALAAVGCLRAISTILESVSR-LPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP-T-I 688 (1049)
Q Consensus 612 ~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~-~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~-~-i 688 (1049)
.+|| ..+.+.++.++.|+.++..... .+-..+.+...+.|....+++.|..+|..+.+++++.+..... . +
T Consensus 588 --~knp----s~p~~~h~~fe~I~al~~~~~~~~~~~ip~l~~~l~p~~~~l~~ed~~El~~~~lq~~s~l~e~f~~~~l 661 (947)
T COG5657 588 --AKNP----SNPQFAHYTFEDIGALVFLKSGMCEITIPTLVLALVPEFPVLLSEDATELWSYVLQLLSILPEHFSGDVL 661 (947)
T ss_pred --ccCC----ccHHHHHHHHHHHHHHHHhhhcccccchHHHHHhhCccchhhhhhhHHHHHHHHHHHHhhcchhhcCCcC
Confidence 3355 4666899999999999887643 3444556666777766666666777777777777777665321 1 2
Q ss_pred CHHHHHHHHHHHHHHhhhH-hhhHhhhHHhhhhHhhcCcccccccCCcchHHHHHHHHHHHhcCCCCCCcccCchhhHHH
Q 001585 689 SLEMWSLWPLMMEALADWA-IDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIE 767 (1049)
Q Consensus 689 sp~l~~l~~~l~~~~~~~~-~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~~l~~~~~~~~~~~~a~~ll~ 767 (1049)
++-..-+....... .-|. ...+..+...+++.+..++.-|-. .+.+.++.++++++.++. .+ ..|.+..
T Consensus 662 p~v~~~l~q~~~~t-~ll~~~~~I~~~~~Ll~~~~~~~~~if~~----s~~~~vL~i~~~ll~~e~-~~----~~~f~~~ 731 (947)
T COG5657 662 PSVVKILRQPSLAT-ELLPTKLEILKSYRLLDNPILTTGYIFKS----SGFQPVLGILQYLLGSEP-HD----ALCFLNL 731 (947)
T ss_pred chHHHHHhcccCch-HHHHHHHHHHHHHHHHHhhhhcccccccc----cchhhhHHHHHHHHhcch-HH----HHHHhhH
Confidence 22111110000000 0011 235566677888877777776643 466788899999997653 22 3566666
Q ss_pred HHHHhccc--CchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh-----CHHHHHHHHHhh--CccHHHHHHHHH
Q 001585 768 VVFQNCKG--QVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYY-----NSSLTLSILHKL--GVATEVFNLWFQ 838 (1049)
Q Consensus 768 ~ii~~~~~--~~~~~l~~il~~~l~~l~~~~~~~~~~~~l~v~~~~~~~-----~p~~~l~~L~~~--~~~~~~~~~w~~ 838 (1049)
.++..+.. ...+++..|...+++|+.+.++..+...++.+|+....- +++.++...++. +....++..|+-
T Consensus 732 ~~v~~l~~~~i~~~~v~~i~~lll~rl~ns~~~r~v~~~i~~fs~v~~k~~~t~~~dnlI~ki~q~k~i~i~~l~g~~Il 811 (947)
T COG5657 732 TVVETLYLENIYEPYVNLIFVLLLSRLKNSKTERFVIKIIHVFSLVSFKDSLTVGCDNLISKINQTKNILIVQLYGNWIL 811 (947)
T ss_pred HHHHHhHHHHHHhhcHHHHHHHHHHHhhcccchHHHHHhheeeEEechhhccccCChHHHHHHHHHHHHHHHHHHhceee
Confidence 66666543 356899999999999999988888877777766654332 345555555532 456777788988
Q ss_pred HHHHHHhhccccCcccchhhHHHHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCC
Q 001585 839 MLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQVAEAAKDEEAEDDDDMDGFQ 918 (1049)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~dkKl~~lal~~ll~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 918 (1049)
..+ .+....+||+..+|+.+++....+..- ....+...++.+|. ++.+...+ |..-++-
T Consensus 812 ~~~---------~i~~~~drKi~~ig~snllrt~~~~vl--s~~sv~~li~~lLs----ei~et~~~------da~i~~~ 870 (947)
T COG5657 812 GFD---------EIHDSKDRKIHLIGLSNLLRTLHPEVL--SYVSVTNLIISLLS----EIFETASG------DAIIYEL 870 (947)
T ss_pred ccc---------hhccHHHHHHHHHhHHhhhhhcCchhh--hHHHHHHHHHHHHH----HHHHhccC------cceehhh
Confidence 888 788999999999999999966433221 12344445555555 33333111 1100000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 001585 919 TDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDEVDPFVFFVDTIKVM 998 (1049)
Q Consensus 919 ~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~vd~~~~~~~~l~~~ 998 (1049)
.|+..|+| ++++.+ .++ +.+++.-..+ .||++++|.-.+|-.+...+
T Consensus 871 ~dd~~d~~---------~~~~is--~~~-f~r~~~~~~k---------------------~Dp~~~i~~~~~~is~~m~~ 917 (947)
T COG5657 871 NDDYADDW---------FDGEIS--AEE-FSRLAQLEFK---------------------VDPVHDIDNTKYFISFFMEA 917 (947)
T ss_pred ccchhhhc---------cccCcc--HHH-HHHHHHhhcc---------------------CCCccccchHHHHHHHHHHH
Confidence 01111111 111222 222 5566553222 38999998855555555556
Q ss_pred HhhChHHHHHHhcCCCHHHHHHHHHHH
Q 001585 999 QASDPLRFQNLTQTLEFQYQALANGVA 1025 (1049)
Q Consensus 999 ~~~~~~~~~~l~~~l~~~~~~~l~~~~ 1025 (1049)
..+|.+.-+.+...|+.+.|..|+++.
T Consensus 918 ~~sn~g~~n~~~~~L~~~nq~~L~q~~ 944 (947)
T COG5657 918 MNSNLGNENEIVFRLPTENQSLLEQLQ 944 (947)
T ss_pred HHhcccchhHHHHhcCCcCHHHHHHHh
Confidence 677777777888899999999888763
No 7
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-61 Score=521.38 Aligned_cols=752 Identities=18% Similarity=0.242 Sum_probs=597.5
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCChHHHHHHHHHhc-CcChhhHHHHHHHHHHhhhhcCCCCCCCcCCCC
Q 001585 3 LPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDN-NCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (1049)
Q Consensus 3 ~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~-~~~~~iRq~Aai~lKn~i~~~W~~~~~~~~~~i 81 (1049)
++||.++|+.+.|||+.+|+.+..+|+++...|+|..||..|+.+. +.+..+|.+|+..|||.|+.+|.. +
T Consensus 12 l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~--------~ 83 (885)
T KOG2023|consen 12 LQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNS--------I 83 (885)
T ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccC--------C
Confidence 5789999999999999999999999999999999999999999764 357899999999999999999984 7
Q ss_pred ChHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhhhh---hHHHHHHHHHHHHHhcccCC
Q 001585 82 SQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEYQP 158 (1049)
Q Consensus 82 ~~~~k~~ir~~ll~~L~~~~~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~~~ 158 (1049)
+.+.+.+||+.++.++.++++.||...+.+|++|+...+-..||+++|.|.++|.++ ..+||+.+|.+||++-..
T Consensus 84 ~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~-- 161 (885)
T KOG2023|consen 84 PSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQ-- 161 (885)
T ss_pred ChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHH--
Confidence 889999999999999999999999999999999999999899999999999999988 468999999999998742
Q ss_pred CCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHhhhccCCcccCChhhH
Q 001585 159 TDSTSMKGYRIYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVF 238 (1049)
Q Consensus 159 t~~~~~~~~r~~~~~~~~~~~~l~~i~~~~~p~Ll~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~lp~~~~~~~~l 238 (1049)
.+.++-.-++ ++.+.|.+++++++. ++.+|..+++|.+..+. ..+..+. .++
T Consensus 162 ------------~lds~~~~rp----l~~mipkfl~f~~h~---------spkiRs~A~~cvNq~i~-~~~qal~--~~i 213 (885)
T KOG2023|consen 162 ------------FLDSDVLTRP----LNIMIPKFLQFFKHP---------SPKIRSHAVGCVNQFII-IQTQALY--VHI 213 (885)
T ss_pred ------------HHhhhcccCc----hHHhHHHHHHHHhCC---------ChhHHHHHHhhhhheee-cCcHHHH--HHH
Confidence 2333333344 445678888777752 36899999999987753 2233443 567
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCChhhhhhcchHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHH
Q 001585 239 NAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHL 318 (1049)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~ 318 (1049)
+.+++.+..+- .|++ ..+||.+|+.+.-+.+-..+ | +.+|++.++++++
T Consensus 214 D~Fle~lFala----------nD~~-------~eVRk~vC~alv~Llevr~d-k-------------l~phl~~IveyML 262 (885)
T KOG2023|consen 214 DKFLEILFALA----------NDED-------PEVRKNVCRALVFLLEVRPD-K-------------LVPHLDNIVEYML 262 (885)
T ss_pred HHHHHHHHHHc----------cCCC-------HHHHHHHHHHHHHHHHhcHH-h-------------cccchHHHHHHHH
Confidence 77777666543 2332 24889999999988876322 1 3558888999886
Q ss_pred HHHHHhhCCcccCHHHHHHHHHHHHhhcCCchhhhhchhhHHHHHHHHhhhccccChhhHhhhhcCHH-HH-------Hh
Q 001585 319 NLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPH-EY-------VR 390 (1049)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~-ef-------i~ 390 (1049)
.... -..+.+...+++||.+.++++-....+.||+..|+.. ++..|.+++.|+-+.+++.+ ++ |+
T Consensus 263 ~~tq------d~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPv-Ll~~M~Ysd~D~~LL~~~eeD~~vpDreeDIk 335 (885)
T KOG2023|consen 263 QRTQ------DVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPV-LLSGMVYSDDDIILLKNNEEDESVPDREEDIK 335 (885)
T ss_pred HHcc------CcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHH-HHccCccccccHHHhcCccccccCCchhhhcc
Confidence 5532 2356799999999999999998888899999999984 55999999999888872221 11 11
Q ss_pred ----------------Hhc---C-----cccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCc
Q 001585 391 ----------------KGY---D-----IIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPY 446 (1049)
Q Consensus 391 ----------------~~~---d-----~~~d~~s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w 446 (1049)
+++ | +....|+.|+|++..|+.|++-+|+++++.+++++.+.|.+ +.|
T Consensus 336 PRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~--------~~W 407 (885)
T KOG2023|consen 336 PRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSS--------EEW 407 (885)
T ss_pred chhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCc--------chh
Confidence 000 0 00115899999999999999999999999999999999876 389
Q ss_pred hhhhHHHHHHHHHHHhhhc-CCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCCh--hHHHHHHHHHHh
Q 001585 447 RQKDGALLAIGALCDKLKQ-TEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVS 523 (1049)
Q Consensus 447 ~~keaal~~lg~la~~l~~-~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~--~~~~~~~~~ll~ 523 (1049)
+.|||+++++|++|+++.+ ..++.+.+ ..++++.|.+..|.+|..+||++|||+.|.+..+ +++..++..+++
T Consensus 408 ~vrEagvLAlGAIAEGcM~g~~p~LpeL----ip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~ 483 (885)
T KOG2023|consen 408 KVREAGVLALGAIAEGCMQGFVPHLPEL----IPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLR 483 (885)
T ss_pred hhhhhhHHHHHHHHHHHhhhcccchHHH----HHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHH
Confidence 9999999999999999875 44444433 3466667889999999999999999999876554 789999999999
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh---HHHHHHHHHHHccCcccccHHHHHH
Q 001585 524 GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMAPYALGLCQ 600 (1049)
Q Consensus 524 ~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~~~i~p~~~~l~~ 600 (1049)
.+-|+++.|+.+||+|+..+.++ ..+.+.||+..|++.|...++.+.... +..++.++.+..|..+.. +.-++
T Consensus 484 ~llD~NK~VQEAAcsAfAtleE~--A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~--~~Yiq 559 (885)
T KOG2023|consen 484 RLLDSNKKVQEAACSAFATLEEE--AGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNK--PAYIQ 559 (885)
T ss_pred HHhcccHHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCc--HHHHH
Confidence 99999999999999999999988 588999999999999999999887653 677888888888877763 12334
Q ss_pred HHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcC--ChHHHHHHHhhHHHHHHHHccc------c------
Q 001585 601 NLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSR--LPHLFVQIEPTLLPIMRRMLTT------D------ 666 (1049)
Q Consensus 601 ~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~--~~~~~~~l~~~~~p~i~~~l~~------~------ 666 (1049)
.|.+.+.+-|+.-.+ +|+.++ -++||++.+..+++. .|. ...++++++.+++.+++. +
T Consensus 560 iLmPPLi~KW~~lsd-----~DKdLf--PLLEClSsia~AL~~gF~P~-~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~p 631 (885)
T KOG2023|consen 560 ILMPPLIEKWELLSD-----SDKDLF--PLLECLSSIASALGVGFLPY-AQPVYQRCFRILQKTLQLLAKVQQDPTVEAP 631 (885)
T ss_pred HhccHHHHHHHhcCc-----ccchHH--HHHHHHHHHHHHHhcccccc-CHHHHHHHHHHHHHHHHHHHhccCCccccCC
Confidence 445555566764432 246666 789999999999963 343 244677888888877542 1
Q ss_pred hhhHHHHHHHHHHHHhhcCC-CCCHHHH--HHHHHHHHHHhhhHhhhHhhhHHhhhhHhhcCcccccccCCcchHHHHHH
Q 001585 667 GQEVFEEVLEIVSYMTFFSP-TISLEMW--SLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWS 743 (1049)
Q Consensus 667 ~~~~~~~~l~ll~~l~~~~~-~isp~l~--~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~ 743 (1049)
..+|+-.++++++.+.+..+ .+.|-+. .+...++.|+++.-.+.-+..+.+|..+.....+.+. .++..++.
T Consensus 632 dkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~-----p~~~~fl~ 706 (885)
T KOG2023|consen 632 DKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVI-----PNLADFLP 706 (885)
T ss_pred CcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhcc-----chHHHHHH
Confidence 23788999999999998753 3444332 4677788888776677777778888877777666655 45666666
Q ss_pred HHHHHhcCCCCCCcccCchhhHHHHHHHhcccCchhchHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHhhCHHHHHHH
Q 001585 744 MVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAE-KSYLKCLLVQVIADALYYNSSLTLSI 822 (1049)
Q Consensus 744 i~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~l~~l~~~~-~~~~~~~~l~v~~~~~~~~p~~~l~~ 822 (1049)
+...-++.. .-+.+..|+..+..+..+++....+|+.+++..++..++... .+++..+...++.|+-+++|+.+...
T Consensus 707 ~lg~Nl~~~--~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~ 784 (885)
T KOG2023|consen 707 ILGANLNPE--NISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPH 784 (885)
T ss_pred HHhhcCChh--hchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchh
Confidence 665444433 234456788899999999988889999999999999988754 66788888999999999999999988
Q ss_pred HHhhCccHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHhccccCCC
Q 001585 823 LHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQL 876 (1049)
Q Consensus 823 L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~dkKl~~lal~~ll~~~~~~l 876 (1049)
+ +.|++.||..+. ++....+|.-.+.|+|+++..+|..+
T Consensus 785 l------~~f~~pWc~sl~---------~i~DneEK~sAFrG~c~mi~vNp~~v 823 (885)
T KOG2023|consen 785 L------DSFMRPWCTSLR---------NIDDNEEKESAFRGLCNMINVNPSGV 823 (885)
T ss_pred H------HHHHHHHHHHhc---------ccccchhHHHHHHHHHHheeeCchhh
Confidence 7 569999999999 99999999999999999999987654
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-50 Score=470.11 Aligned_cols=678 Identities=19% Similarity=0.275 Sum_probs=488.4
Q ss_pred CChHHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCcCCC
Q 001585 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQK 80 (1049)
Q Consensus 1 Md~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iRq~Aai~lKn~i~~~W~~~~~~~~~~ 80 (1049)
||.+++.|++++.+|||+.+|++||+.|+.....+.....|.+|+...+ ++++||+|||.+|+.+.++|+.
T Consensus 1 ~~~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~-~p~~Rq~aaVl~Rkl~~~~w~~-------- 71 (1075)
T KOG2171|consen 1 MDSAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILATSA-DPQVRQLAAVLLRKLLTKHWSR-------- 71 (1075)
T ss_pred CchhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHhhc--------
Confidence 8899999999999999999999999999976665557778888887754 8999999999999999999994
Q ss_pred CChHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhhhh---hHHHHHHHHHHHHHhccc
Q 001585 81 ISQVDKDMVRDHILVFVA-QVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEY 156 (1049)
Q Consensus 81 i~~~~k~~ir~~ll~~L~-~~~~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~ 156 (1049)
++++.|+.||+.|+.++. ++.+.||+.+|.+|+.||+.+.|++||+|++.|++..+|+ -.+.|+++|..+...+..
T Consensus 72 l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~ 151 (1075)
T KOG2171|consen 72 LSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN 151 (1075)
T ss_pred CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc
Confidence 999999999999999985 6889999999999999999999999999999999999988 358999999999887721
Q ss_pred CCCCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHhhhc-cCCcccCCh
Q 001585 157 QPTDSTSMKGYRIYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYL-EIPKQLLDP 235 (1049)
Q Consensus 157 ~~t~~~~~~~~r~~~~~~~~~~~~l~~i~~~~~p~Ll~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~-~lp~~~~~~ 235 (1049)
++ ..+++.++.+|.+.+++++ ..++..+++.+...... +.-... .
T Consensus 152 --------------~~-------------~~~~~~l~~lf~q~~~d~s-----~~vr~~a~rA~~a~~~~~~~~~~~--~ 197 (1075)
T KOG2171|consen 152 --------------TL-------------QPHLDDLLRLFSQTMTDPS-----SPVRVAAVRALGAFAEYLENNKSE--V 197 (1075)
T ss_pred --------------cc-------------chhHHHHHHHHHHhccCCc-----chHHHHHHHHHHHHHHHhccchHH--H
Confidence 11 1245667777788776543 22777777777666532 111111 1
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHH
Q 001585 236 NVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILE 315 (1049)
Q Consensus 236 ~~l~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~ 315 (1049)
..+...++.++.++...++ .++++ .-+.+++.|+.+.+.. || ++.+++..+++
T Consensus 198 ~~~~~llP~~l~vl~~~i~-----~~d~~--------~a~~~l~~l~El~e~~--pk------------~l~~~l~~ii~ 250 (1075)
T KOG2171|consen 198 DKFRDLLPSLLNVLQEVIQ-----DGDDD--------AAKSALEALIELLESE--PK------------LLRPHLSQIIQ 250 (1075)
T ss_pred HHHHHHhHHHHHHhHhhhh-----ccchH--------HHHHHHHHHHHHHhhc--hH------------HHHHHHHHHHH
Confidence 5566666767777665432 22221 2357888998888873 44 45667788888
Q ss_pred HHHHHHHHhhCCcccCHHHHHHHHHHHHhhcCCchhh-hhchhhHHHHHHHHhhhccccChhhHhhhhcCHHHHHhHhcC
Q 001585 316 CHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMY-NLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYD 394 (1049)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~-~~~~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d 394 (1049)
.++++..+. -..+.+++.+++|+.++++.++.. +...+...+|+..++ . ++++.+. | +||...+..
T Consensus 251 ~~l~Ia~n~----~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l-~--~mte~~~-----D-~ew~~~d~~ 317 (1075)
T KOG2171|consen 251 FSLEIAKNK----ELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLL-A--MMTEEED-----D-DEWSNEDDL 317 (1075)
T ss_pred HHHHHhhcc----cccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHH-H--hcCCccc-----c-hhhcccccc
Confidence 888776542 467899999999999998875433 333444555544322 2 2333321 2 445544332
Q ss_pred cccccCCHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhH
Q 001585 395 IIEDLYSPRTASMDFVSELVRKRG-KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSEL 473 (1049)
Q Consensus 395 ~~~d~~s~R~aA~~ll~~L~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~ 473 (1049)
+.++..++...|.+.++.++.+.| +.+++++++++.+++++. +|+.|.|+|.+++++++++.+. +..++
T Consensus 318 ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~--------~w~~R~AaL~Als~i~EGc~~~--m~~~l 387 (1075)
T KOG2171|consen 318 DEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQST--------EWKERHAALLALSVIAEGCSDV--MIGNL 387 (1075)
T ss_pred ccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHHHcccHHH--HHHHH
Confidence 234467899999999999999985 889999999999999873 8999999999999999999763 34567
Q ss_pred HHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCCh---hHHHHHHHHHHhcCCCC-CCchHHHHHHHHHHHHHhccc
Q 001585 474 ERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ---NNFRKALHSVVSGLRDP-ELPVRVDSVFALRSFVEACRD 549 (1049)
Q Consensus 474 ~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~---~~~~~~~~~ll~~L~d~-~~~V~~~Aa~AL~~~~~~~~~ 549 (1049)
++. .++|++.|++|||++|..||.++||+++ .|.+. .++..+.++++..+.++ +.+|+.+||.|+-+|.+.+ .
T Consensus 388 ~~I-l~~Vl~~l~DphprVr~AA~naigQ~st-dl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~-~ 464 (1075)
T KOG2171|consen 388 PKI-LPIVLNGLNDPHPRVRYAALNAIGQMST-DLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC-D 464 (1075)
T ss_pred HHH-HHHHHhhcCCCCHHHHHHHHHHHHhhhh-hhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC-c
Confidence 774 4789999999999999999999999986 55543 45667777888888876 5689999999999999998 6
Q ss_pred ccccccchHHHHHHHHHHhhhhch----hhHHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHH
Q 001585 550 LNEIRPILPQLLDEFFKLMNEVEN----EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGAL 625 (1049)
Q Consensus 550 ~~~l~p~l~~il~~L~~ll~~~~~----~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~ 625 (1049)
++.+.||++.+|+.++..+.+.+. +..+.+|.++....++.+.||...++..|...+ .+.++ ++...
T Consensus 465 ~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L----~n~~~-----~d~r~ 535 (1075)
T KOG2171|consen 465 KSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFL----QNADD-----KDLRE 535 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHH----hCCCc-----hhhHH
Confidence 999999999999977776654433 347788888889999999999999999887543 32221 24556
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccchhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhh
Q 001585 626 AAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALAD 705 (1049)
Q Consensus 626 ~~~~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~isp~l~~l~~~l~~~~~~ 705 (1049)
.+...++|++.+-.++++.+ +.+..-++++..+.. -.+...-......++...|.+++++++.
T Consensus 536 LrgktmEcisli~~AVGke~-----F~~~a~eliqll~~~------------~~~~~~~dd~~~sy~~~~warmc~ilg~ 598 (1075)
T KOG2171|consen 536 LRGKTMECLSLIARAVGKEK-----FLPLAEELIQLLLEL------------QGSDQDDDDPLRSYMIAFWARMCRILGD 598 (1075)
T ss_pred HHhhHHHHHHHHHHHhhhhh-----hhHhHHHHHHHHHhh------------cccchhhccccHHHHHHHHHHHHHHhch
Confidence 67788999999999997532 222222222221110 0000111122334566777777777777
Q ss_pred hHhhhHhhhHHhhhhHhhcCcccccccCC-c------chHHHHHHHHHH-HhcCCCCCCcccCchhhHHHHHHHhcccCc
Q 001585 706 WAIDFFPNILVPLDNYISRGTAHFLTCKE-P------DYQQSLWSMVSS-IMADKNLEDGDIEPAPKLIEVVFQNCKGQV 777 (1049)
Q Consensus 706 ~~~~~l~~~~~~L~~~i~~~~~~~l~~~~-~------~~~~~i~~i~~~-~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~ 777 (1049)
+...|++.++|+|-.=....++..+-... . ...+.+ ..-.+ .++-.+....++..||.++..+...++..+
T Consensus 599 ~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~-~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F 677 (1075)
T KOG2171|consen 599 DFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVV-ELGDKENIGIRTSVLDEKETACEALGEYAKELKEAF 677 (1075)
T ss_pred hhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhh-ccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhh
Confidence 77778888887776655555554432100 0 000000 00000 111122223345679999999999999999
Q ss_pred hhchHHHHHHHHHHHHhhhhhHHH
Q 001585 778 DHWVEPYLRITVERLRRAEKSYLK 801 (1049)
Q Consensus 778 ~~~l~~il~~~l~~l~~~~~~~~~ 801 (1049)
.||+.+.+..++..+.-.-+..++
T Consensus 678 ~pYve~v~~l~v~~l~f~fhdgVR 701 (1075)
T KOG2171|consen 678 APYVEQVVELMVPLLKFYFHDGVR 701 (1075)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHH
Confidence 999999999777776653333333
No 9
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=100.00 E-value=5.8e-49 Score=434.48 Aligned_cols=344 Identities=26% Similarity=0.432 Sum_probs=276.9
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHhhc---cCCc----hhHHHHHHHHHHHHHHhhhccCCcccCChhhHHHHHH
Q 001585 171 EFKSDEERTPVYRIVEETFHHLLNIFNRLVQI---VNPS----LEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMI 243 (1049)
Q Consensus 171 ~~~~~~~~~~l~~i~~~~~p~Ll~~~~~~~~~---~~~~----~~~~~~~~~~lk~~~~~~~~~lp~~~~~~~~l~~~~~ 243 (1049)
++++++.+.+++.++..+.++|+.+|..+.+. ...+ ....+++++++|||++++++++|++|+ +++..||+
T Consensus 8 ~~~s~~l~~eik~vl~~~~~pll~l~~~~~~~i~~~~~~~~~l~~~~~~l~lilKiF~sL~~~DLPe~fe--d~l~~wm~ 85 (370)
T PF08506_consen 8 QFRSDELYTEIKYVLDKFAEPLLELFKQTDQLIEANANNAASLKVLFEMLKLILKIFYSLNCQDLPEFFE--DNLSEWME 85 (370)
T ss_dssp S---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHSSS--HHHH--HTHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHccCcCcHHHH--HHHHHHHH
Confidence 89999999999999999999999999886542 1111 345778899999999999999999997 89999999
Q ss_pred HHHHHhcCCCCCCCCCCChhhhhhcchHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001585 244 LFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNR 323 (1049)
Q Consensus 244 ~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~ 323 (1049)
.|..+|+.+.|... ..|++ +.++++|+|+|+|++++++.+||++ +..+|++.|++.+|++|.+
T Consensus 86 ~f~~~L~~~~p~l~-~~d~~--e~~~l~kvK~~i~~~~~ly~~kY~e--------------~f~~~l~~fv~~vw~lL~~ 148 (370)
T PF08506_consen 86 IFHKYLTYPNPALE-EDDDD--EPGLLEKVKAWICENLNLYAEKYEE--------------EFEPFLPTFVQAVWNLLTK 148 (370)
T ss_dssp HHHHHHH--SGGG--TT-SS--S--HHHHHHHHHHHHHHHHHHH-HH--------------HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCcccC-CCCcc--cccHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 99999999887432 23333 4567899999999999999999854 2356889999999999987
Q ss_pred hhCCcccCHHHHHHHHHHHHhhcCCchhhhhc--hhhHHHHHHHHhhhccccChhhHhhhhcCHHHHHhHhcCcccccCC
Q 001585 324 IRVGGYLPDRVTNLILQYLSNSISKNSMYNLL--QPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYS 401 (1049)
Q Consensus 324 ~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~--~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s 401 (1049)
...+ +..|.++..+++||+++++.+.++..+ ++++.+||.++|+|+|+++++|+|+||+||.||||++.|+ +|.+|
T Consensus 149 ~~~~-~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~-sd~~T 226 (370)
T PF08506_consen 149 ISQQ-PKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEG-SDSDT 226 (370)
T ss_dssp --SS-GGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCS-S---S
T ss_pred hhhc-ccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccc-cccCC
Confidence 5443 456999999999999998877655566 6899999999999999999999999999999999999997 57999
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhc-------CCCchhhHH
Q 001585 402 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQ-------TEPYKSELE 474 (1049)
Q Consensus 402 ~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~-------~~~~~~~~~ 474 (1049)
+|+||.+++++|+++|++.+++.++.++++++++|.++|.. +|+.||+|++++|+++..... .++ ..+++
T Consensus 227 rR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~--~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~-~v~v~ 303 (370)
T PF08506_consen 227 RRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSN--NWRSKDGALYLIGALASKGSTTKSGVTQTNE-LVDVV 303 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT---HHHHHHHHHHHHHHHBSS--BTTB-S-B-T-TS-HH
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcc--cHHHHHHHHHHHHHHHhhhccccCCcccccc-cccHH
Confidence 99999999999999999999999999999999999887765 999999999999999987632 222 45899
Q ss_pred HHHHHhhccccC---CCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 001585 475 RMLVQHVFPEFS---SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFAL 540 (1049)
Q Consensus 475 ~~l~~~v~p~l~---~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL 540 (1049)
+|+.++|+|+|+ +.+|+||+||||++..|.... +++.+..+++.++++|++++.+|+.|||.|+
T Consensus 304 ~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l--~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQL--PKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS---HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 999999999998 568999999999999998753 5578999999999999999999999999986
No 10
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=100.00 E-value=3.2e-41 Score=380.31 Aligned_cols=404 Identities=20% Similarity=0.352 Sum_probs=303.5
Q ss_pred cccccccchHHHHHHHHHHhhh---hchhhHHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHH
Q 001585 549 DLNEIRPILPQLLDEFFKLMNE---VENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGAL 625 (1049)
Q Consensus 549 ~~~~l~p~l~~il~~L~~ll~~---~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~ 625 (1049)
.++++.|++++++++|+.++.. .++|.++.++..++..+++.+.|++..++++|..++..+.+++ .++.
T Consensus 16 ~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNP--------snP~ 87 (435)
T PF03378_consen 16 SKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNP--------SNPR 87 (435)
T ss_dssp -GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS-----------HH
T ss_pred CHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC--------CCcc
Confidence 5789999999999999999987 5667788888888888999999999999999999988877644 3889
Q ss_pred HHHHHHHHHHHHHHhhc-CChHHHHHHHhhHHHHHHHHcccchhhHHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHH
Q 001585 626 AAVGCLRAISTILESVS-RLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP--TISLEMWSLWPLMMEA 702 (1049)
Q Consensus 626 ~~~~~le~i~~ll~~~~-~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~--~isp~l~~l~~~l~~~ 702 (1049)
+.|+++|+++.+++.+. .+|+.+.++|+.++|++..+|++|+.+|++|+|||++.+++..+ .+++.++++||.++.-
T Consensus 88 FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p 167 (435)
T PF03378_consen 88 FNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSP 167 (435)
T ss_dssp HHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSG
T ss_pred hhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCc
Confidence 99999999999999974 68888899999999999999999999999999999999998876 7888999999999876
Q ss_pred HhhhH-hhhHhhhHHhhhhHhhcCcccccccCCcchHHHHHHHHHHHhcCCCCCCcccCchhhHHHHHHHhcccC-chhc
Q 001585 703 LADWA-IDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ-VDHW 780 (1049)
Q Consensus 703 ~~~~~-~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~-~~~~ 780 (1049)
.. |. .+++|.++++|.+|+.+++..+... ++++.++++|+++++++..+. .|++|+++|+.+++.. +++|
T Consensus 168 ~l-We~~gniPalvrLL~a~i~k~~~~i~~~---~~l~~iLgvFQkLi~sk~~D~----~gF~LL~~iv~~~p~~~l~~y 239 (435)
T PF03378_consen 168 AL-WERRGNIPALVRLLQAYIKKDPSFIVAN---NQLEPILGVFQKLIASKANDH----YGFDLLESIVENLPPEALEPY 239 (435)
T ss_dssp GG-GGSTTTHHHHHHHHHHHHHHHGGG-------S-CHHHHHHHHHHHT-TTCHH----HHHHHHHHHHHHS-HHHHGGG
T ss_pred ch-hccCCCcCcHHHHHHHHHHhCchhhcch---hhHHHHHHHHHHHHCCCCcch----HHHHHHHHHHHHCCHHHHHHH
Confidence 33 54 6899999999999999999988643 789999999999999886554 4999999999999985 8999
Q ss_pred hHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHhhCHHHHHHHHHhh--CccHHHH-HHHHHHHHHHHhhccccCcccch
Q 001585 781 VEPYLRITVERLRRAEKSYLK-CLLVQVIADALYYNSSLTLSILHKL--GVATEVF-NLWFQMLQQVKKNGLRVNFKREH 856 (1049)
Q Consensus 781 l~~il~~~l~~l~~~~~~~~~-~~~l~v~~~~~~~~p~~~l~~L~~~--~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~ 856 (1049)
++.|+..+++||++.++..+. ..+..+...+..++|+.+++.++++ |++.+++ +.|+..++ ++.+..
T Consensus 240 l~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~---------k~~~~~ 310 (435)
T PF03378_consen 240 LKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQ---------KVSGPI 310 (435)
T ss_dssp HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGG---------G--SHH
T ss_pred HHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchh---------hcCCcc
Confidence 999999999999987755554 4444444455678999999999987 7788888 67999988 999999
Q ss_pred hhHHHHHHHHHHhccccCCCCh--hhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCCCCCCCCCCCCCCCCCC
Q 001585 857 DKKVCCLGLTSLLALTADQLPG--EALGRVFRATLDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMG 934 (1049)
Q Consensus 857 dkKl~~lal~~ll~~~~~~l~~--~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 934 (1049)
|||++++|+++||+.++..+.+ ..|+.++.++++++.+- ++...+ ++|+. .++
T Consensus 311 erKi~~vGltkLL~es~~~~~~~~~~w~~ll~~Ll~ll~~p--------~~~~~~-----------~~e~~----~~~-- 365 (435)
T PF03378_consen 311 ERKICAVGLTKLLCESPAFLSEYSQLWPPLLEALLKLLERP--------PEASAA-----------DEEDF----IDE-- 365 (435)
T ss_dssp HHHHHHHHHHHHHHSSTTHHHH-CHHHHHHHHHHHHHHHTT--------STT-S---------------S----------
T ss_pred hhhHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHHHHcCC--------cccccc-----------ccccc----ccc--
Confidence 9999999999999876433222 38999999999988841 110000 00000 000
Q ss_pred CCCCCCchhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCC-chHHHHHHHHHHHHhhChHHHHHHhcC-
Q 001585 935 VDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDEV-DPFVFFVDTIKVMQASDPLRFQNLTQT- 1012 (1049)
Q Consensus 935 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~v-d~~~~~~~~l~~~~~~~~~~~~~l~~~- 1012 (1049)
+|.++.+|+.. +.+|+.+..+.+ ||+.+| |+..||.+.|+++.+++|+++..+++.
T Consensus 366 -~d~~~~gy~~~-fs~L~~a~~~~~--------------------Dp~~~i~d~~~~~~~~L~~~~~~~~G~~~~~i~~~ 423 (435)
T PF03378_consen 366 -EDVEDIGYQVS-FSKLAFAGKKPR--------------------DPLPEIPDPKQYLAQSLSKLSQAHPGKIPPLIQQQ 423 (435)
T ss_dssp --------TT-G-GG--GGG--------------------------S-TTTTCHHHHHHHHHHHHHHHTTSSHHHHHGGG
T ss_pred -ccchhcccchh-hHHHHhCCCCCC--------------------CCCCCCCCHHHHHHHHHHHHHHhCCCchHHHHHhh
Confidence 11122367666 677876544332 799999 999999999999999999999877775
Q ss_pred CCHHHHHHHHHH
Q 001585 1013 LEFQYQALANGV 1024 (1049)
Q Consensus 1013 l~~~~~~~l~~~ 1024 (1049)
|+++.|+.|+++
T Consensus 424 l~~~~~~~L~~y 435 (435)
T PF03378_consen 424 LPPEAQQALQQY 435 (435)
T ss_dssp S-HHHHHHHHH-
T ss_pred CCHHHHHHhccC
Confidence 999999999864
No 11
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-37 Score=346.54 Aligned_cols=674 Identities=16% Similarity=0.244 Sum_probs=443.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcc--CCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCC---CcCC
Q 001585 5 SLALILQGALSPNPEERKAAEHSLNQFQY--TPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEP---NEQQ 79 (1049)
Q Consensus 5 ~l~~~L~~tls~d~~~r~~AE~~L~~~~~--~p~f~~~Ll~i~~~~~~~~~iRq~Aai~lKn~i~~~W~~~~~---~~~~ 79 (1049)
++.++|..|+|||+++|++||.+|++++. -|+|...|.+++.+.+.+..+|.+|++.|||.+..+-..... .+|.
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl 81 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWL 81 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHH
Confidence 46788989999999999999999999876 689999999999999999999999999999999754332111 2566
Q ss_pred CCChHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhCC-CCchhHHHHHHHHhhhh-h---HHHHHHHHHHHHHhc
Q 001585 80 KISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ-Q---VYGALFVLRILSRKY 154 (1049)
Q Consensus 80 ~i~~~~k~~ir~~ll~~L~~~~~~ir~~l~~~i~~Ia~~d~P-~~Wp~Ll~~l~~~l~s~-~---~~~~L~~L~~i~k~~ 154 (1049)
.++.|.|++||.+++.+|.++.+..++..+.+++.||+.+.| +.||+|+..++....+. . -.++|.++..+|++.
T Consensus 82 ~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i 161 (859)
T KOG1241|consen 82 QLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDI 161 (859)
T ss_pred cCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccC
Confidence 799999999999999999999999999999999999999999 78999999999998776 2 379999999999887
Q ss_pred ccCCCCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHhhhccCCcccCC
Q 001585 155 EYQPTDSTSMKGYRIYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLD 234 (1049)
Q Consensus 155 ~~~~t~~~~~~~~r~~~~~~~~~~~~l~~i~~~~~p~Ll~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~lp~~~~~ 234 (1049)
.+ + .+....+. .|..+.+.....+ .+..+|..++++++.+.-+.- .-|.+
T Consensus 162 ~p--------------e--------vl~~~sN~---iLtaIv~gmrk~e----~s~~vRLaa~~aL~nsLef~~-~nF~~ 211 (859)
T KOG1241|consen 162 DP--------------E--------VLEQQSND---ILTAIVQGMRKEE----TSAAVRLAALNALYNSLEFTK-ANFNN 211 (859)
T ss_pred CH--------------H--------HHHHHHhH---HHHHHHhhccccC----CchhHHHHHHHHHHHHHHHHH-Hhhcc
Confidence 31 1 12222222 2233333322222 235677788888876643210 01221
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHH-H
Q 001585 235 PNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGK-I 313 (1049)
Q Consensus 235 ~~~l~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~-~ 313 (1049)
+..-.-+|+... +. .+..| .+++..++.||+++..-|.+ |+.+|+.+ +
T Consensus 212 E~ern~iMqvvc---Ea-----tq~~d---------~~i~~aa~~ClvkIm~LyY~--------------~m~~yM~~al 260 (859)
T KOG1241|consen 212 EMERNYIMQVVC---EA-----TQSPD---------EEIQVAAFQCLVKIMSLYYE--------------FMEPYMEQAL 260 (859)
T ss_pred Hhhhceeeeeee---ec-----ccCCc---------HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Confidence 122222222111 11 11222 35778899999999998732 33333332 3
Q ss_pred HHHHHHHHHHhhCCcccCHHHHHHHHHHHHhhcCCchh-----hhhc----hh----hHHHHHHHHhhhccccChhhHhh
Q 001585 314 LECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSM-----YNLL----QP----RLDVLLFEIVFPLMCFNDNDQKL 380 (1049)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~~-----~~~~----~~----~l~~li~~~i~p~l~l~~~d~e~ 380 (1049)
+...+.-+. ...|++..++++||++++..+-- -... .| +..+-+. .+.|.+ ++.
T Consensus 261 faitl~amk------s~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~-~v~P~L------l~~ 327 (859)
T KOG1241|consen 261 FAITLAAMK------SDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQ-DVVPVL------LEL 327 (859)
T ss_pred HHHHHHHHc------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHh-HhhHHH------HHH
Confidence 222222221 24689999999999988753211 0000 11 1111111 122322 122
Q ss_pred hhcCHHHHHhHhcCcccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHH
Q 001585 381 WDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALC 460 (1049)
Q Consensus 381 we~Dp~efi~~~~d~~~d~~s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la 460 (1049)
... .+.+..+|.|+|.+||..+|.-+++..|+.+++.+++|+.+.+++ ++|+.||++..++|++-
T Consensus 328 L~k-------qde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~--------pdwr~reaavmAFGSIl 392 (859)
T KOG1241|consen 328 LTK-------QDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQN--------PDWRNREAAVMAFGSIL 392 (859)
T ss_pred HHh-------CCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCC--------cchhhhhHHHHHHHhhh
Confidence 111 011223467999999999999999999999999999999999876 39999999999999998
Q ss_pred HhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhcccc---CChhHHHHHHHHHHhcCCCCCCchHHHHH
Q 001585 461 DKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINF---SDQNNFRKALHSVVSGLRDPELPVRVDSV 537 (1049)
Q Consensus 461 ~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f---~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa 537 (1049)
++-.... ..+-+.+ ..+.++....++.-++|..+.|.+|+.++... .++++++..++.++..|+|. +.|...+|
T Consensus 393 ~gp~~~~-Lt~iV~q-alp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~C 469 (859)
T KOG1241|consen 393 EGPEPDK-LTPIVIQ-ALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE-PRVASNVC 469 (859)
T ss_pred cCCchhh-hhHHHhh-hhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHH
Confidence 8753211 1111222 22334445668888999999999999987532 24477888999999999884 67899999
Q ss_pred HHHHHHHHhcc-------cccccccchHHHHHHHHHHhhhhc-hh-----hHHHHHHHHHHHccCcccccHHHHHHHHHH
Q 001585 538 FALRSFVEACR-------DLNEIRPILPQLLDEFFKLMNEVE-NE-----DLVFTLETIVDKFGEEMAPYALGLCQNLAA 604 (1049)
Q Consensus 538 ~AL~~~~~~~~-------~~~~l~p~l~~il~~L~~ll~~~~-~~-----~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~ 604 (1049)
+|+..|.+... ..+...|+.+.|+..|++.-...+ ++ ....+|..+|....+.+.|....+......
T Consensus 470 WAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~ 549 (859)
T KOG1241|consen 470 WAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILE 549 (859)
T ss_pred HHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 99999997763 122445899999999999887654 33 356788888888888877765555444444
Q ss_pred HHHHHHhcccCCCCCCChhHH---HHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHccc-chhhHHHHHHHHHHH
Q 001585 605 AFWRCMNTAEADEDADDPGAL---AAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTT-DGQEVFEEVLEIVSY 680 (1049)
Q Consensus 605 ~~~~~~~~~~~d~~~~~~~~~---~~~~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~-~~~~~~~~~l~ll~~ 680 (1049)
-+-+++++...+. +++.. ....+..++..|++.++. -..+....++-.+-.+++. ...-..+++|--+++
T Consensus 550 kl~q~i~~~~l~~---~dr~q~~eLQs~Lc~~Lq~i~rk~~~---~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~t 623 (859)
T KOG1241|consen 550 KLDQTISSQILSL---ADRAQLNELQSLLCNTLQSIIRKVGS---DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVST 623 (859)
T ss_pred HHHHHHHHHhccH---hhHHHHHHHHHHHHHHHHHHHHHccc---cchhHHHHHHHHHHHHHcCCccccchHHHHHHHHH
Confidence 4444444211111 11211 123456778888887753 1233445556666666655 344456778877777
Q ss_pred HhhcC-CCCCHHHHHHHHHHHHHHhhh--------HhhhHhhhHHhhhhHhhcCcccccccCCcchHHHHHHHHHHHhcC
Q 001585 681 MTFFS-PTISLEMWSLWPLMMEALADW--------AIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMAD 751 (1049)
Q Consensus 681 l~~~~-~~isp~l~~l~~~l~~~~~~~--------~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~~l~~ 751 (1049)
++... +.+..+|..+.|.+...+++. ..+.+.++.+.|+. .|+ .|...+++..-+.|++
T Consensus 624 l~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~-------~i~-----py~d~~mt~Lvq~Lss 691 (859)
T KOG1241|consen 624 LAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALED-------DIL-----PYCDELMTVLVQCLSS 691 (859)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh-------hhh-----hHHHHHHHHHHHHccC
Confidence 77653 445555666666665555321 12334444444432 233 4566666666777777
Q ss_pred CCCCCcccCchhhHHHHHHHhcccCchhchHHHHHHH
Q 001585 752 KNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRIT 788 (1049)
Q Consensus 752 ~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~ 788 (1049)
+...-+-+-........|.+..+.++.+|+..++..+
T Consensus 692 ~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~ll 728 (859)
T KOG1241|consen 692 PNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLL 728 (859)
T ss_pred ccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 6555444556677777788888888888777665543
No 12
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.6e-32 Score=295.22 Aligned_cols=587 Identities=16% Similarity=0.223 Sum_probs=375.3
Q ss_pred CChHHHHHHHHH-hcCCCHHHHHHHHHHHHHhccC--CChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCC-C-
Q 001585 1 MDLPSLALILQG-ALSPNPEERKAAEHSLNQFQYT--PQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHE-P- 75 (1049)
Q Consensus 1 Md~~~l~~~L~~-tls~d~~~r~~AE~~L~~~~~~--p~f~~~Ll~i~~~~~~~~~iRq~Aai~lKn~i~~~W~~~~-~- 75 (1049)
|...++.++.+. .+|||+++|..||.+|+++++. ..|...|.+.+.+.+..+.+|.+|++.|||.+..+-.... +
T Consensus 1 M~~~ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~ 80 (858)
T COG5215 1 MKKSEFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGC 80 (858)
T ss_pred CchHHHHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 556667666655 4999999999999999999873 4688999999999888899999999999999975543211 1
Q ss_pred -CcCCCCChHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhCC-CCchhHHHHHHHHhhhh----hHHHHHHHHHH
Q 001585 76 -NEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ----QVYGALFVLRI 149 (1049)
Q Consensus 76 -~~~~~i~~~~k~~ir~~ll~~L~~~~~~ir~~l~~~i~~Ia~~d~P-~~Wp~Ll~~l~~~l~s~----~~~~~L~~L~~ 149 (1049)
.+|..+++|.|++||...+++|.++.+.+.+..+..++.||+.+.| +.||+|+..++...... ....+|.++..
T Consensus 81 ~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy 160 (858)
T COG5215 81 SQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGY 160 (858)
T ss_pred HHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHH
Confidence 2566799999999999999999999999999999999999999999 67999999999988765 24677888888
Q ss_pred HHHhcccCCCCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHhhhccCC
Q 001585 150 LSRKYEYQPTDSTSMKGYRIYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIP 229 (1049)
Q Consensus 150 i~k~~~~~~t~~~~~~~~r~~~~~~~~~~~~l~~i~~~~~p~Ll~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~lp 229 (1049)
.|+.-. | ..++...-..|..+......++. ...++..++|++....-+ .-
T Consensus 161 ~ces~~------------------------P-e~li~~sN~il~aiv~ga~k~et----~~avRLaaL~aL~dsl~f-v~ 210 (858)
T COG5215 161 HCESEA------------------------P-EDLIQMSNVILFAIVMGALKNET----TSAVRLAALKALMDSLMF-VQ 210 (858)
T ss_pred HhhccC------------------------H-HHHHHHhhHHHHHHHHhhcccCc----hHHHHHHHHHHHHHHHHH-HH
Confidence 786541 1 12222233334444444433322 356777889998763211 11
Q ss_pred cccCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhh
Q 001585 230 KQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNY 309 (1049)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~ 309 (1049)
..|..++.-+.+|+.....- +..|+ .+...++.|++++..-|.+ +
T Consensus 211 ~nf~~E~erNy~mqvvceat--------q~~d~---------e~q~aafgCl~kim~LyY~------------------f 255 (858)
T COG5215 211 GNFCYEEERNYFMQVVCEAT--------QGNDE---------ELQHAAFGCLNKIMMLYYK------------------F 255 (858)
T ss_pred Hhhcchhhhchhheeeehhc--------cCCcH---------HHHHHHHHHHHHHHHHHHH------------------H
Confidence 12222344444444333221 12232 3556799999999987632 2
Q ss_pred HHHHHHHHHHHHHHhhCCcccCHHHHHHHHHHHHhhcCCchhhh----hc-----hhh--HHHHHHHHhhhccccChhhH
Q 001585 310 AGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYN----LL-----QPR--LDVLLFEIVFPLMCFNDNDQ 378 (1049)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~----~~-----~~~--l~~li~~~i~p~l~l~~~d~ 378 (1049)
++.+++..+-.+....-. ...|++..++++||+++++.+.--. .+ ++| ...-+.. ++|.+ +
T Consensus 256 m~~ymE~aL~alt~~~mk-s~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~d-vlP~l------L 327 (858)
T COG5215 256 MQSYMENALAALTGRFMK-SQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVAD-VLPEL------L 327 (858)
T ss_pred HHHHHHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHH-HHHHH------H
Confidence 333444443333221111 2358999999999999876431111 11 111 0000111 12221 1
Q ss_pred hhhhcCHHHHHhHhcCcccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHH
Q 001585 379 KLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGA 458 (1049)
Q Consensus 379 e~we~Dp~efi~~~~d~~~d~~s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~ 458 (1049)
.+.+. ...|.++|.|++..+|..+|.-+++..|+.++.+++.|+.+.+++ ++|+.||++..++|+
T Consensus 328 ~LL~~-------q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~--------~~w~nreaavmAfGS 392 (858)
T COG5215 328 SLLEK-------QGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRS--------ESWANREAAVMAFGS 392 (858)
T ss_pred HHHHh-------cCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccC--------chhhhHHHHHHHhhh
Confidence 11111 111233578999999999999999999999999999999998875 389999999999999
Q ss_pred HHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccc---cCChhHHHHHHHHHHhcCCCCCCchHHH
Q 001585 459 LCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN---FSDQNNFRKALHSVVSGLRDPELPVRVD 535 (1049)
Q Consensus 459 la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~---f~~~~~~~~~~~~ll~~L~d~~~~V~~~ 535 (1049)
+-++-.+. ....+.+-....+..+..++.-+++.++.||+|++++.. ..+..++.....+.+..+.|. +.+...
T Consensus 393 vm~gp~~~--~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~-p~~~~n 469 (858)
T COG5215 393 VMHGPCED--CLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC-PFRSIN 469 (858)
T ss_pred hhcCccHH--HHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc-chHHhh
Confidence 98873220 000111111223334455778899999999999998742 233356677777777777663 446677
Q ss_pred HHHHHHHHHHhcc-----cccccccchHHHHHHHHHHhhhhchhh-----HHHHHHHHHHHccCcccccHHHHHHHHHHH
Q 001585 536 SVFALRSFVEACR-----DLNEIRPILPQLLDEFFKLMNEVENED-----LVFTLETIVDKFGEEMAPYALGLCQNLAAA 605 (1049)
Q Consensus 536 Aa~AL~~~~~~~~-----~~~~l~p~l~~il~~L~~ll~~~~~~~-----l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~ 605 (1049)
.+++..++.++-. ..+.+.|+.+.|+..|++.-+...+|. ...+|.++|....+.+.|....+.......
T Consensus 470 csw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~k 549 (858)
T COG5215 470 CSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKK 549 (858)
T ss_pred hHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 8889999998753 356688999999999999887776663 667899999988888887655544444433
Q ss_pred HHHHHhcccCCCCCCChhHH---HHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccch-hhHHHHHHHHHHHH
Q 001585 606 FWRCMNTAEADEDADDPGAL---AAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG-QEVFEEVLEIVSYM 681 (1049)
Q Consensus 606 ~~~~~~~~~~d~~~~~~~~~---~~~~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~~-~~~~~~~l~ll~~l 681 (1049)
+.++++-.+.- -.-+|... ....++..+..|++.-.. .....+..++.++-.+++... .-..++++--++++
T Consensus 550 l~~~isv~~q~-l~~eD~~~~~elqSN~~~vl~aiir~~~~---~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal 625 (858)
T COG5215 550 LDECISVLGQI-LATEDQLLVEELQSNYIGVLEAIIRTRRR---DIEDVEDQLMELFIRILESTKPTTAFGDVYTAISAL 625 (858)
T ss_pred HHHHHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHhcCC---CcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHH
Confidence 33333211100 00001111 122344444455544321 123345556666666665432 22334555444444
Q ss_pred h
Q 001585 682 T 682 (1049)
Q Consensus 682 ~ 682 (1049)
.
T Consensus 626 ~ 626 (858)
T COG5215 626 S 626 (858)
T ss_pred H
Confidence 3
No 13
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.7e-17 Score=187.78 Aligned_cols=643 Identities=15% Similarity=0.200 Sum_probs=402.8
Q ss_pred hHHHHHHHHHhcCC-CHHHHHHHHHHHHHhccCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCcCCCC
Q 001585 3 LPSLALILQGALSP-NPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (1049)
Q Consensus 3 ~~~l~~~L~~tls~-d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iRq~Aai~lKn~i~~~W~~~~~~~~~~i 81 (1049)
++++.+++....++ +.+....++++|.+++..|.-+..-.+++.... ...+|.++|+.|.-.|.++|.. +
T Consensus 6 Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k-~~evqyFGAltL~~ki~~~~e~--------~ 76 (982)
T KOG2022|consen 6 IATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDK-SSEVQYFGALTLHDKINTRWEE--------C 76 (982)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCc-hhHHHHHhHHHHHHHHHhhhcc--------C
Confidence 56788888898887 778888999999999999977766677766554 5577999999999999999994 8
Q ss_pred ChHHHHHHHHHHHHHhh--c-CChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhhhh--h-H---HHHHHHHHHH--
Q 001585 82 SQVDKDMVRDHILVFVA--Q-VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--Q-V---YGALFVLRIL-- 150 (1049)
Q Consensus 82 ~~~~k~~ir~~ll~~L~--~-~~~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~--~-~---~~~L~~L~~i-- 150 (1049)
++++...+|..++..+. . .++.|-+.++.+++..+-+.-|+.||+-+.+++..++.+ . + .++..+|..+
T Consensus 77 ~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~ 156 (982)
T KOG2022|consen 77 PANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSF 156 (982)
T ss_pred ChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhcc
Confidence 99999999999999884 2 356778888888888888889999999999999999875 1 1 2333333332
Q ss_pred -HHhcccCCCCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccCCc---hhHHHHHHHHHHHHHHhhh-
Q 001585 151 -SRKYEYQPTDSTSMKGYRIYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPS---LEVADLIKLICKIFWSSIY- 225 (1049)
Q Consensus 151 -~k~~~~~~t~~~~~~~~r~~~~~~~~~~~~l~~i~~~~~p~Ll~~~~~~~~~~~~~---~~~~~~~~~~lk~~~~~~~- 225 (1049)
-..++ +-+.+..+....|..+.......++ ++...+..+.++ ....-....++||+..++.
T Consensus 157 ~p~e~q----------~~~l~~t~~~~l~~eLak~~~~v~~----l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~ 222 (982)
T KOG2022|consen 157 MPAEFQ----------HVTLPLTRRSVLRGELAKFSENVIS----LLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRY 222 (982)
T ss_pred CcHhhh----------hccchhHHHHHHHHHHHHHHHHHhH----HHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHH
Confidence 12221 0011122223344444444444555 333333333322 2223445678899988875
Q ss_pred ccCCcccCChhhHHHHHHHHHHHhcCCCC----CC---------CCCCCh------------hhhh---hcchHHHHHHH
Q 001585 226 LEIPKQLLDPNVFNAWMILFLNVLERPVP----SE---------GEPADP------------EQRK---SWGWWKVKKWT 277 (1049)
Q Consensus 226 ~~lp~~~~~~~~l~~~~~~~~~~l~~~~~----~~---------~~~~d~------------~~~~---~~~~~k~kk~~ 277 (1049)
..+|. .....|.+..+.++..... +. ....|. ..+- ..-+|+.-.|.
T Consensus 223 i~~~~-----~~c~~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~ 297 (982)
T KOG2022|consen 223 ISLTG-----MDCDQITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGI 297 (982)
T ss_pred hcccc-----ccHHHHHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHH
Confidence 44542 3456666666666552211 00 001110 0110 11223333454
Q ss_pred HHHHHHHHHHhCCCCCCChhhHHHHH---HHHHhhHHHHHHHH------------HHHHHHh--hCCcc-cCHHHHHHHH
Q 001585 278 VHILNRLYTRFGDLKLQNPENRAFAQ---MFQKNYAGKILECH------------LNLLNRI--RVGGY-LPDRVTNLIL 339 (1049)
Q Consensus 278 ~~~l~~l~~~~~~~~~~~~~~~~f~~---~f~~~~~~~~~~~~------------~~~l~~~--~~~~~-~~~~~~~~~l 339 (1049)
+.-.++....+.+++-...+-..|.. .+..+++|.++... .+.+... .+|.| +.+.+-...+
T Consensus 298 l~e~~~~~~~~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l 377 (982)
T KOG2022|consen 298 LQEVSGKIQEEENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTL 377 (982)
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHH
Confidence 44455444444444422222222322 33456777666654 1111111 12333 4456667888
Q ss_pred HHHHhhcCC--------chhh-hhc-hhhHHHHHHHHhhhcccc-ChhhHhhhhcCHHHHHhHhcCcccccCCHHHHHHH
Q 001585 340 QYLSNSISK--------NSMY-NLL-QPRLDVLLFEIVFPLMCF-NDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMD 408 (1049)
Q Consensus 340 ~fl~~~~~~--------~~~~-~~~-~~~l~~li~~~i~p~l~l-~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aA~~ 408 (1049)
.||.+.... -+.+ ..+ ++-..++++..+ |.+.+ +++..-.|+.|..| .+.+-|+.-.+
T Consensus 378 ~FW~tL~dei~~~~~e~~~~~~~i~~~qIy~qlvei~l-~K~~~Ps~e~~~~W~S~s~e----------~F~~YR~diSD 446 (982)
T KOG2022|consen 378 IFWYTLQDEIMQTINETQQIKKQILSQQIYAQLVEILL-KKLALPSKEIWLSWSSDSRE----------QFESYRKDISD 446 (982)
T ss_pred HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHH-HHhcCCCHHHhccCCcchHH----------HHHHHHHHHHH
Confidence 999886321 1111 123 366677776544 65655 56666778776432 24456888888
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccC--
Q 001585 409 FVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS-- 486 (1049)
Q Consensus 409 ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~-- 486 (1049)
++...-+-+|...+..+..-+.++++....+| ..|...|++++.+.++++.+.... ...+...+. +.+..+
T Consensus 447 ~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p---~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~--~~asik~S 519 (982)
T KOG2022|consen 447 LLMSSYSILGDGLLDFLIDTLEQALAAGDEDP---DSLNRTEACIFQFQSVAEYLGETE--STWIPRLFE--TSASIKLS 519 (982)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhccCCCc---hHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHH--hccccccc
Confidence 88888888887777777777777776654444 379999999999999999987542 233444332 233333
Q ss_pred CCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHH
Q 001585 487 SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFK 566 (1049)
Q Consensus 487 ~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ 566 (1049)
.++|-+-+.+...+|-++.|.-.+|.++...++.+++.|..+. -...|...|+.+|+.| ++.+.||+.+++..+-.
T Consensus 520 ~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk--~s~q~i~tl~tlC~~C--~~~L~py~d~~~a~~~e 595 (982)
T KOG2022|consen 520 APNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSK--ESEQAISTLKTLCETC--PESLDPYADQFSAVCYE 595 (982)
T ss_pred cCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCch--HHHHHHHHHHHHHHhh--hhhCchHHHHHHHHHHH
Confidence 2478888899999999998755566788899999999997543 4567888899999997 89999999999999888
Q ss_pred Hhhhhc-----hhhHHHHHHHHHHHcc-CcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHh
Q 001585 567 LMNEVE-----NEDLVFTLETIVDKFG-EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILES 640 (1049)
Q Consensus 567 ll~~~~-----~~~l~~~l~~iv~~~~-~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~ 640 (1049)
.++... ...++..++-++.+.. +++..|...|++.+...+...+..+.+++ ++.....-.+.+++++..+
T Consensus 596 ~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~----e~~l~~~~~l~~iS~LftS 671 (982)
T KOG2022|consen 596 VLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQ----ENHLRIAFQLNTISALFTS 671 (982)
T ss_pred HhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHHHHHHHhc
Confidence 876521 1235666666666665 44555777777777666655544333333 4555555678899999988
Q ss_pred hcC-C-------h---------HHHHHHHhhHHHHHHHHccc--chhhHHHHHHHHHHHHhhc-CCCC-CHHHHHHHHHH
Q 001585 641 VSR-L-------P---------HLFVQIEPTLLPIMRRMLTT--DGQEVFEEVLEIVSYMTFF-SPTI-SLEMWSLWPLM 699 (1049)
Q Consensus 641 ~~~-~-------~---------~~~~~l~~~~~p~i~~~l~~--~~~~~~~~~l~ll~~l~~~-~~~i-sp~l~~l~~~l 699 (1049)
+.. + | ....++.+.++|+|.++++. ...++.+-++-+...-+.. .+++ -|.+.++++-+
T Consensus 672 L~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi 751 (982)
T KOG2022|consen 672 LINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFI 751 (982)
T ss_pred cCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHH
Confidence 731 1 1 13456677889999998863 2345666655554433322 2334 33444444443
No 14
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.79 E-value=8.9e-14 Score=152.81 Aligned_cols=522 Identities=13% Similarity=0.192 Sum_probs=302.0
Q ss_pred ChHHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCcCCCC
Q 001585 2 DLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (1049)
Q Consensus 2 d~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iRq~Aai~lKn~i~~~W~~~~~~~~~~i 81 (1049)
|++-+-++.+....+|...+++|++-|.+++..|+.+.-.-+|+.+.. -++.+..|.-.|-..|++.|. .+
T Consensus 12 diallDkVVttfyqg~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~-~pqskyiALs~LdklIttkWk--------ll 82 (1053)
T COG5101 12 DIALLDKVVTTFYQGDGRKQEQAQRILTKFQELPDAWTKADYILNNSK-LPQSKYIALSLLDKLITTKWK--------LL 82 (1053)
T ss_pred CHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhCchHHHHHHHHHhccc-CcchhhhHHHHHHHHHHhhhh--------hC
Confidence 455566777788889999999999999999999999998888988765 567889999999999999998 58
Q ss_pred ChHHHHHHHHHHHHHhhc--CChHHH-------HHHHHHHHHHHHhhCCCCchhHHHHHHHHhhhh-hH-HHH---HHHH
Q 001585 82 SQVDKDMVRDHILVFVAQ--VPPLLR-------VQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ-QV-YGA---LFVL 147 (1049)
Q Consensus 82 ~~~~k~~ir~~ll~~L~~--~~~~ir-------~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~-~~-~~~---L~~L 147 (1049)
|++.|..||.-+++.+.+ ++..+| +.+-..+-.|++.|||.+||+++|++++.-+.+ .+ ++. |..|
T Consensus 83 p~~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~s~~vCeNnmivLklL 162 (1053)
T COG5101 83 PEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQISMEVCENNMIVLKLL 162 (1053)
T ss_pred CcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccchHHHHhccHHHHHHh
Confidence 999999999999999863 454544 456667788999999999999999999987766 33 344 4444
Q ss_pred HHHHHhcccCCCCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHH-HHhhhc
Q 001585 148 RILSRKYEYQPTDSTSMKGYRIYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIF-WSSIYL 226 (1049)
Q Consensus 148 ~~i~k~~~~~~t~~~~~~~~r~~~~~~~~~~~~l~~i~~~~~p~Ll~~~~~~~~~~~~~~~~~~~~~~~lk~~-~~~~~~ 226 (1049)
++-+-+|+. + +|- +.| .+.+...+..=||.+..++.+.+..+.. ..+....+..+ +.+.
T Consensus 163 sEEvFdfSa----e-qmT-----q~k----~~~LkNqm~~EF~qIF~lc~qiLE~~~~----~SLi~ATLesllrfl~-- 222 (1053)
T COG5101 163 SEEVFDFSA----E-QMT-----QVK----KRLLKNQMKIEFPQIFGLCKQILEYSRD----ESLIEATLESLLRFLE-- 222 (1053)
T ss_pred HHHHHhccH----H-HHH-----HHH----HHHHHHHHhhhHHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHHHh--
Confidence 444444411 0 010 111 2344555666678888888887764321 12233333322 2222
Q ss_pred cCCcccCChhhHHH---------------HHHHHHHHhcCC-CCCCCCCCChhhhhhcchHHHHHHHH-----HHHHHHH
Q 001585 227 EIPKQLLDPNVFNA---------------WMILFLNVLERP-VPSEGEPADPEQRKSWGWWKVKKWTV-----HILNRLY 285 (1049)
Q Consensus 227 ~lp~~~~~~~~l~~---------------~~~~~~~~l~~~-~~~~~~~~d~~~~~~~~~~k~kk~~~-----~~l~~l~ 285 (1049)
.+|-.+.-.-++-. -+..+..+.+.. .| +.+++-+|.......+-.... -.=.++.
T Consensus 223 wiPl~yIfeTnIieLv~~~f~s~pd~r~~tl~CLtEi~~L~~~p---q~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~ 299 (1053)
T COG5101 223 WIPLDYIFETNIIELVLEHFNSMPDTRVATLSCLTEIVDLGRHP---QENAEKERILVIHFQCIEFLKMYSNKPQEEDIY 299 (1053)
T ss_pred hCchhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhhccCc---ccchhhhhHHHHHHHHHHHHHHHhccchHHHHH
Confidence 23321110011100 111111111110 11 112221111000000000000 0012345
Q ss_pred HHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHHhh--------CC------cccCHHHHHHHHHHHHhhcCC---
Q 001585 286 TRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIR--------VG------GYLPDRVTNLILQYLSNSISK--- 348 (1049)
Q Consensus 286 ~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~--------~~------~~~~~~~~~~~l~fl~~~~~~--- 348 (1049)
+.||.....+ +.|.... ..++..+...+..++++.. .+ +-....+...++++|...+..
T Consensus 300 e~Y~~~~~ne---q~Fvq~L-A~fL~s~~~~~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~ 375 (1053)
T COG5101 300 EVYGGMDKNE---QIFVQKL-AQFLSSLYEVYISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYS 375 (1053)
T ss_pred HHHcccChhH---HHHHHHH-HHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 5555422111 2222211 2234444444444444310 00 112346677888998876421
Q ss_pred --------------------------c------hhhhh-chhhHHHHHHHHhhhccccChhhHhhhhcCHHHHHhHhcCc
Q 001585 349 --------------------------N------SMYNL-LQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDI 395 (1049)
Q Consensus 349 --------------------------~------~~~~~-~~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~ 395 (1049)
+ +.++. ....+.++ ..+++-+| .++++.-.-++|..|-||+...+
T Consensus 376 E~q~lp~tem~Pli~ls~~s~~istnpn~~~~~pLrkhiY~~ilsqL-rlvlienM-vrPEEVliVendegEivRefvke 453 (1053)
T COG5101 376 EFQRLPATEMSPLIQLSVGSQAISTNPNQDSTKPLRKHIYIGILSQL-RLVLIENM-VRPEEVLIVENDEGEIVREFVKE 453 (1053)
T ss_pred HHHhCcccccCcchhccccchhccCCcchhcccchHHHHHHHHHHHH-HHHHHHcC-CCcceEEEEECCCcHHHHHHhcc
Confidence 0 00000 01123332 22344554 56777666778888888876543
Q ss_pred ccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHH
Q 001585 396 IEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELER 475 (1049)
Q Consensus 396 ~~d~~s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~ 475 (1049)
. |.-+.-+....+|-.|+.-.-.++-..+.+-+...+. +...+|........|+|+++..+.+... ..
T Consensus 454 t-DtI~lYksmRevLvyLthL~v~Dte~~mi~Klarq~d------g~EWsw~nlNtLcWAIGSISGamsE~~E-----kr 521 (1053)
T COG5101 454 T-DTIELYKSMREVLVYLTHLIVDDTEKYMIGKLARQLD------GKEWSWNNLNTLCWAIGSISGAMSEVNE-----KR 521 (1053)
T ss_pred c-cHhHHHHHHhhHHHHHhhhhhhhHHHHHHHHHHHHhc------CCccchhhHhHHHHHHhcccchhhhHHH-----HH
Confidence 3 3445555566666666554323332222232222221 1123699999999999999998865322 13
Q ss_pred HHHHhhccc--------cCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001585 476 MLVQHVFPE--------FSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 547 (1049)
Q Consensus 476 ~l~~~v~p~--------l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~ 547 (1049)
|+++.+-.. ..+....+.+...+++|||....-.+-..+..++.-+...|...+-.|+-.||.++-.+...|
T Consensus 522 F~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC 601 (1053)
T COG5101 522 FFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKC 601 (1053)
T ss_pred HHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhC
Confidence 343322222 234567888888999999976431222578889999999998888899999999999999988
Q ss_pred c------cccccccchHHHHHHHHHHhhhhch
Q 001585 548 R------DLNEIRPILPQLLDEFFKLMNEVEN 573 (1049)
Q Consensus 548 ~------~~~~l~p~l~~il~~L~~ll~~~~~ 573 (1049)
+ ....-.||+..|+..|-+.-.+.+.
T Consensus 602 ~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~p 633 (1053)
T COG5101 602 PVHFVTQQEGESEPFIVYIIRNLPKTTGDLEP 633 (1053)
T ss_pred cHHHhhcCCCCCCcHHHHHHHhhhhhcccCCh
Confidence 5 2233468888888888766554433
No 15
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.1e-11 Score=147.53 Aligned_cols=771 Identities=14% Similarity=0.128 Sum_probs=407.3
Q ss_pred HHHHhcC-CCHHHHHHHHHHHHHhcc--CCChHHHHHHHHHh--cCcChhhHHHHHHHHHHhhhhcCCCCCCCcCCCCCh
Q 001585 9 ILQGALS-PNPEERKAAEHSLNQFQY--TPQHLVRLLQIIVD--NNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQ 83 (1049)
Q Consensus 9 ~L~~tls-~d~~~r~~AE~~L~~~~~--~p~f~~~Ll~i~~~--~~~~~~iRq~Aai~lKn~i~~~W~~~~~~~~~~i~~ 83 (1049)
+|..+++ +.+.+|+.--.-+.++.+ -|+=++-|++.+.. .+.+++.|.+|-..|...... ++.
T Consensus 84 lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~------------~~~ 151 (1075)
T KOG2171|consen 84 LLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPET------------FGN 151 (1075)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhh------------hcc
Confidence 3444444 445577766555555543 34434444443321 234778999888888765432 233
Q ss_pred HHHH---HHHHHHHHHhhcCChHHHHHHHHHHHHHHHhh--CCCCch---hHHHHHHHHhhhh-------hHHHHHHHHH
Q 001585 84 VDKD---MVRDHILVFVAQVPPLLRVQLGECLKTIIHAD--YPEQWP---HLLDWVKHNLQDQ-------QVYGALFVLR 148 (1049)
Q Consensus 84 ~~k~---~ir~~ll~~L~~~~~~ir~~l~~~i~~Ia~~d--~P~~Wp---~Ll~~l~~~l~s~-------~~~~~L~~L~ 148 (1049)
..+. .++..+.++|.+++..||.....++..++..- -+..|+ .++|.++..++.- ....+|.+|.
T Consensus 152 ~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~ 231 (1075)
T KOG2171|consen 152 TLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALI 231 (1075)
T ss_pred ccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHH
Confidence 3333 56777888998877779999999999888753 234454 6777777776543 2356777777
Q ss_pred HHHHhcccCCCCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHhhhccC
Q 001585 149 ILSRKYEYQPTDSTSMKGYRIYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEI 228 (1049)
Q Consensus 149 ~i~k~~~~~~t~~~~~~~~r~~~~~~~~~~~~l~~i~~~~~p~Ll~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~l 228 (1049)
++..... . .+...+..++..-+.++.+ .. . -..+|..++.++-++... -
T Consensus 232 El~e~~p---------------k--------~l~~~l~~ii~~~l~Ia~n----~~--l-~~~~R~~ALe~ivs~~e~-A 280 (1075)
T KOG2171|consen 232 ELLESEP---------------K--------LLRPHLSQIIQFSLEIAKN----KE--L-ENSIRHLALEFLVSLSEY-A 280 (1075)
T ss_pred HHHhhch---------------H--------HHHHHHHHHHHHHHHHhhc----cc--c-cHHHHHHHHHHHHHHHHh-h
Confidence 7776551 1 1222333333333333332 11 1 135677777777666543 1
Q ss_pred CcccCC-hhhHHHHHHHHHHHhcCCCCCCC-----C--CCChhhhhhcchHHHHHHHHHHHHHHHHHhCCCCCCChhhHH
Q 001585 229 PKQLLD-PNVFNAWMILFLNVLERPVPSEG-----E--PADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRA 300 (1049)
Q Consensus 229 p~~~~~-~~~l~~~~~~~~~~l~~~~~~~~-----~--~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~ 300 (1049)
|..... .....+.+ ..++....+-.. . ..|+|+ ... -...+.+.+-|+....| ||.
T Consensus 281 p~~~k~~~~~~~~lv---~~~l~~mte~~~D~ew~~~d~~ded~-~~~----~~~~A~~~lDrlA~~L~-g~~------- 344 (1075)
T KOG2171|consen 281 PAMCKKLALLGHTLV---PVLLAMMTEEEDDDEWSNEDDLDEDD-EET----PYRAAEQALDRLALHLG-GKQ------- 344 (1075)
T ss_pred HHHhhhchhhhccHH---HHHHHhcCCcccchhhcccccccccc-ccC----cHHHHHHHHHHHHhcCC-hhh-------
Confidence 221110 01222222 233332211000 0 111111 111 22346677777776654 232
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhCCcccCHHHHHHHHHHHHhhcCCchhhhhchhhHHHHHHHHhhhccccChhh---
Q 001585 301 FAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDND--- 377 (1049)
Q Consensus 301 f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d--- 377 (1049)
.+|.+++..-..+.+ ..|... ..++--++.+++. ..+.+.+++++++..++ +.++=..-.
T Consensus 345 --------v~p~~~~~l~~~l~S---~~w~~R---~AaL~Als~i~EG--c~~~m~~~l~~Il~~Vl-~~l~DphprVr~ 407 (1075)
T KOG2171|consen 345 --------VLPPLFEALEAMLQS---TEWKER---HAALLALSVIAEG--CSDVMIGNLPKILPIVL-NGLNDPHPRVRY 407 (1075)
T ss_pred --------ehHHHHHHHHHHhcC---CCHHHH---HHHHHHHHHHHcc--cHHHHHHHHHHHHHHHH-hhcCCCCHHHHH
Confidence 345555554444432 335333 3334334444332 23466667777776443 554211111
Q ss_pred -----HhhhhcCH----HHHHhHhc-----CcccccCCHHHH--HHHHHHHHHHhcccchHHHHHHHHHH-HhcccCCCC
Q 001585 378 -----QKLWDEDP----HEYVRKGY-----DIIEDLYSPRTA--SMDFVSELVRKRGKENLQKFIQFIVG-IFKRYDETP 440 (1049)
Q Consensus 378 -----~e~we~Dp----~efi~~~~-----d~~~d~~s~R~a--A~~ll~~L~~~~~~~~~~~~~~~i~~-~l~~~~~~~ 440 (1049)
+..+..|- .-+.++.. ..-++..++|.. |+..+..+.+...+..+.+.++.+.+ ++.-..++
T Consensus 408 AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~- 486 (1075)
T KOG2171|consen 408 AALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQS- 486 (1075)
T ss_pred HHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcC-
Confidence 11122221 11111100 011224455543 34455556666656666666655555 44332222
Q ss_pred cCCCCchhhhHHHHHHHHHHHhhhc-CCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCCh--hHHHHH
Q 001585 441 VEYKPYRQKDGALLAIGALCDKLKQ-TEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKA 517 (1049)
Q Consensus 441 ~~~~~w~~keaal~~lg~la~~l~~-~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~--~~~~~~ 517 (1049)
.....+|.++.+||++|+...+ -.+|.+-+.+.+.+.+..-=.....-||+.++.|+|-.+....+.. +...++
T Consensus 487 ---~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~el 563 (1075)
T KOG2171|consen 487 ---SKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEEL 563 (1075)
T ss_pred ---CchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHH
Confidence 2568999999999999998754 2334444444443322211112346799999898887754322222 456777
Q ss_pred HHHHHhc---CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhh------c----------------
Q 001585 518 LHSVVSG---LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV------E---------------- 572 (1049)
Q Consensus 518 ~~~ll~~---L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~------~---------------- 572 (1049)
++.++.. ..+.+-+.+.+-..+..++|+.. .++|.||++.+|.-++.-.+.. +
T Consensus 564 iqll~~~~~~~~~~dd~~~sy~~~~warmc~il--g~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~ 641 (1075)
T KOG2171|consen 564 IQLLLELQGSDQDDDDPLRSYMIAFWARMCRIL--GDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVV 641 (1075)
T ss_pred HHHHHhhcccchhhccccHHHHHHHHHHHHHHh--chhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhh
Confidence 8877777 34557789999999999999985 8999999999999998765420 0
Q ss_pred ---hh--------------hHHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHH
Q 001585 573 ---NE--------------DLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAIS 635 (1049)
Q Consensus 573 ---~~--------------~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~ 635 (1049)
.. .....|.++....++.+.||+.+.+...+..+.-... + -.++..++++.
T Consensus 642 ~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fh----d--------gVR~aa~~~~p 709 (1075)
T KOG2171|consen 642 ELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFH----D--------GVRKAAAESMP 709 (1075)
T ss_pred ccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhh----h--------HHHHHHHHHHH
Confidence 00 1123334444456788999999888733322221111 1 12334455555
Q ss_pred HHHHhh----cCChHHHHHHHhhHHHHHHHHcccch-hhHHHHHHHHHHHHhhcCC--CCCHH-----------------
Q 001585 636 TILESV----SRLPHLFVQIEPTLLPIMRRMLTTDG-QEVFEEVLEIVSYMTFFSP--TISLE----------------- 691 (1049)
Q Consensus 636 ~ll~~~----~~~~~~~~~l~~~~~p~i~~~l~~~~-~~~~~~~l~ll~~l~~~~~--~isp~----------------- 691 (1049)
.++++. ...|.....+-..+.|.....+..+. .+..-++++-+..+++... .+.+.
T Consensus 710 ~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~ 789 (1075)
T KOG2171|consen 710 QLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHF 789 (1075)
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHH
Confidence 554443 24455444555555554444443221 1222222222222221110 00000
Q ss_pred ---------------------HHH-----HHHH-------HHHHHhhhHhhhHhhhHHhhhhHhhcCccccccc------
Q 001585 692 ---------------------MWS-----LWPL-------MMEALADWAIDFFPNILVPLDNYISRGTAHFLTC------ 732 (1049)
Q Consensus 692 ---------------------l~~-----l~~~-------l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~------ 732 (1049)
... ++.. +.+..++....++..+.|.+..++..+....-+|
T Consensus 790 ~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~ 869 (1075)
T KOG2171|consen 790 KRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFD 869 (1075)
T ss_pred HHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 000 1111 1111111112333344444444443332211111
Q ss_pred --------CCcchHHHHHHHHHHHhcCCCCCCcccCchhhHHHHHHHhcccCchhchHHHHHHHHHHHHh-----hhhhH
Q 001585 733 --------KEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR-----AEKSY 799 (1049)
Q Consensus 733 --------~~~~~~~~i~~i~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~l~~l~~-----~~~~~ 799 (1049)
+.++|.+.++..+...+.+.. .+-+..|..-+..+-++.+..+.+.+...+..+...++. .+...
T Consensus 870 d~ie~~~~a~~~~~~~~~p~~~~~~~d~~--pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ 947 (1075)
T KOG2171|consen 870 DLIEGCGEASAKYKERFLPLVLEALQDSD--PEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRR 947 (1075)
T ss_pred HHHHhcccccchHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhH
Confidence 233566777777777766542 222445666666666666656677777766666666654 22555
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHhhCccHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHhccccCCCChh
Q 001585 800 LKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGE 879 (1049)
Q Consensus 800 ~~~~~l~v~~~~~~~~p~~~l~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~dkKl~~lal~~ll~~~~~~l~~~ 879 (1049)
..-+.++-|+++++++|..+- . ..++-.|+..++ ...+..+-+-..--||.|+..+++.+-.
T Consensus 948 ateNa~gaiaki~~~~~~~i~--v------dqvl~~~l~~LP---------l~~D~eEa~~iy~~l~~L~e~n~p~v~~- 1009 (1075)
T KOG2171|consen 948 ATENAIGAIAKILLFNPNRIP--V------DQVLPAWLSWLP---------LKEDKEEAVPIYTFLSDLYESNHPIVLG- 1009 (1075)
T ss_pred HHHHHHHHHHHHHHhCCccCc--H------HHHHHHHHHhCC---------CccchhhhhhHHHHHHHHHHhCCCeeeC-
Confidence 667789999999999987554 2 678899999999 8888888888999999999888776521
Q ss_pred hHHHHHHHHHHHHH
Q 001585 880 ALGRVFRATLDLLV 893 (1049)
Q Consensus 880 ~~~~~~~~~~~ll~ 893 (1049)
.-++.+..++.++.
T Consensus 1010 ~~n~~ip~i~~v~~ 1023 (1075)
T KOG2171|consen 1010 PNNQNIPKILSVCA 1023 (1075)
T ss_pred CCcccchHHHHHHH
Confidence 01345556666665
No 16
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.4e-10 Score=131.01 Aligned_cols=501 Identities=14% Similarity=0.205 Sum_probs=282.5
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHhccCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCcCCCC
Q 001585 4 PSLALILQGALSP--NPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (1049)
Q Consensus 4 ~~l~~~L~~tls~--d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iRq~Aai~lKn~i~~~W~~~~~~~~~~i 81 (1049)
+.+.|++.+...| |+..|+||-+.+++++..|.-+..+..++.....++.+|..+--.|-..++..++. .
T Consensus 3 ddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne--------~ 74 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNE--------A 74 (980)
T ss_pred hHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhcc--------C
Confidence 4567788887776 88999999999999999999999999999877678899999999999888766653 6
Q ss_pred ChHHHHHHHHHHHHHhh-----c----CChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhhhh-h---HHHHHHHHH
Q 001585 82 SQVDKDMVRDHILVFVA-----Q----VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ-Q---VYGALFVLR 148 (1049)
Q Consensus 82 ~~~~k~~ir~~ll~~L~-----~----~~~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~-~---~~~~L~~L~ 148 (1049)
+..+.+.||..+..-+. . .+.-|++.++++++.+.-.+||..||.++.++...++-+ + +.-=+.+|.
T Consensus 75 nl~elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dfflkvll 154 (980)
T KOG2021|consen 75 NLNELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFFLKVLL 154 (980)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHH
Confidence 77899999999987652 2 267799999999999999999999999999999999866 2 222223333
Q ss_pred HHHHhcccCCCCcccccccccccccccc-ccc--hH-HHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHhh
Q 001585 149 ILSRKYEYQPTDSTSMKGYRIYEFKSDE-ERT--PV-YRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSI 224 (1049)
Q Consensus 149 ~i~k~~~~~~t~~~~~~~~r~~~~~~~~-~~~--~l-~~i~~~~~p~Ll~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~ 224 (1049)
.|=.+.. ..+ -.++++ .++ .+ +.+=.+-.|.+.+.|-+.+..-.+. ....+...++.|+.+.+
T Consensus 155 aIdsEia---d~d---------v~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~-~npgl~~~cLdc~g~fV 221 (980)
T KOG2021|consen 155 AIDSEIA---DQD---------VIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENI-VNPGLINSCLDCIGSFV 221 (980)
T ss_pred HhhhHhh---hcc---------ccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHh
Confidence 3222220 000 111111 110 11 1222345566666666655421111 01356667788887765
Q ss_pred h-ccCCcccCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchHHHHHHHHHHHHHHHH-----------------
Q 001585 225 Y-LEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYT----------------- 286 (1049)
Q Consensus 225 ~-~~lp~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~----------------- 286 (1049)
. .++.-... +.+++++...++. ..+|-.+|.|+..++.
T Consensus 222 SWIdInLIaN-----d~f~nLLy~fl~i-------------------eelR~aac~cilaiVsKkMkP~dKL~lln~L~q 277 (980)
T KOG2021|consen 222 SWIDINLIAN-----DYFLNLLYKFLNI-------------------EELRIAACNCILAIVSKKMKPMDKLALLNMLNQ 277 (980)
T ss_pred hhhhhhhhhc-----hhHHHHHHHHHhH-------------------HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence 3 34321111 2233443333321 0122233333333333
Q ss_pred ---HhCCCCCCChhhHHHHHHHHHhhHHHHH---HHHHHHHHHhhCCc------------------c---cCHHHHHHHH
Q 001585 287 ---RFGDLKLQNPENRAFAQMFQKNYAGKIL---ECHLNLLNRIRVGG------------------Y---LPDRVTNLIL 339 (1049)
Q Consensus 287 ---~~~~~~~~~~~~~~f~~~f~~~~~~~~~---~~~~~~l~~~~~~~------------------~---~~~~~~~~~l 339 (1049)
.+|--..-..+-..|.+++.. .+..+- ..+|+.+.+..... + ..|.+-..++
T Consensus 278 ~l~lfg~~s~dq~~d~df~e~vsk-Litg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~if 356 (980)
T KOG2021|consen 278 TLELFGYHSADQMDDLDFWESVSK-LITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIF 356 (980)
T ss_pred HHHHHhhhccccccCchHHHHHHH-HHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHH
Confidence 222111000011122222211 111000 00111110000000 0 1122333333
Q ss_pred HHHHhhc----CCchhhhhchhhHHHHHHHHhhhccccChhhHhhhhcC-HHHHHhHhcCcccccCCHHHHHHHHHHHHH
Q 001585 340 QYLSNSI----SKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDED-PHEYVRKGYDIIEDLYSPRTASMDFVSELV 414 (1049)
Q Consensus 340 ~fl~~~~----~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d~e~we~D-p~efi~~~~d~~~d~~s~R~aA~~ll~~L~ 414 (1049)
.||+..+ +.+.....-+-++..++. .++..+|+.+. ..|.+| |. +|+.+.....|.-=-.+++++.
T Consensus 357 pFlsdyl~~LKkl~~ls~~qk~~l~~ill-ai~kqicydem--y~nddn~tg------~EeEa~f~e~RkkLk~fqdti~ 427 (980)
T KOG2021|consen 357 PFLSDYLAFLKKLKALSSPQKVPLHKILL-AIFKQICYDEM--YFNDDNVTG------DEEEAFFEEVRKKLKNFQDTIV 427 (980)
T ss_pred HHHHHHHHHHhhcccccchhhccHHHHHH-HHHHHHhccHH--hhcccCCCC------chHHHHHHHHHHHHHHHHHHHH
Confidence 4443322 111111222345677665 44577777554 335554 21 0111123456776666777776
Q ss_pred HhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcC------CC-----chhhHHHHHHHhhcc
Q 001585 415 RKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQT------EP-----YKSELERMLVQHVFP 483 (1049)
Q Consensus 415 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~------~~-----~~~~~~~~l~~~v~p 483 (1049)
.--+.- ++..|.+.+++...+..+ .+|..-|.|++.+-.+++.+... .+ ...+++..+++.-
T Consensus 428 ~idpsl----~l~~Ir~slS~al~ns~e-~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsq-- 500 (980)
T KOG2021|consen 428 VIDPSL----FLNNIRQSLSAALMNSKE-ESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQ-- 500 (980)
T ss_pred hcCHHH----HHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcc--
Confidence 654432 345555555544332222 38999999999999999987521 11 1223333332221
Q ss_pred ccCCCCcchhHHHHHHHHHhhccccCC-hhHHHHHHHHHHhc--CCCCCCchHHHHHHHHHHHHHhcccccccccchHHH
Q 001585 484 EFSSPVGHLRAKAAWVAGQYAHINFSD-QNNFRKALHSVVSG--LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQL 560 (1049)
Q Consensus 484 ~l~~~~~~lr~ra~~~l~~~~~~~f~~-~~~~~~~~~~ll~~--L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~i 560 (1049)
....+|+.+.---...+-||... |.- ++....++.+.+.. |.+.+-.||..|..-+.+|+.. .+..+.||++.|
T Consensus 501 v~~h~h~lVqLlfmE~ivRY~kf-f~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKl--Lkkqlvpfie~i 577 (980)
T KOG2021|consen 501 VLAHDHELVQLLFMELIVRYNKF-FSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKL--LKKQLVPFIEEI 577 (980)
T ss_pred cccCCchHHHHHHHHHHHHHHHH-HhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 12357888888888888888753 332 23334444444332 3456778999999999999988 478899999999
Q ss_pred HHHHHHHhh
Q 001585 561 LDEFFKLMN 569 (1049)
Q Consensus 561 l~~L~~ll~ 569 (1049)
++.+-.++.
T Consensus 578 ln~iqdlL~ 586 (980)
T KOG2021|consen 578 LNKIQDLLH 586 (980)
T ss_pred HHHHHHHHc
Confidence 999999983
No 17
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=3.4e-12 Score=141.28 Aligned_cols=485 Identities=16% Similarity=0.233 Sum_probs=284.7
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCcCCCCChHHHHHHHHHHHHHhh---
Q 001585 22 KAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVA--- 98 (1049)
Q Consensus 22 ~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iRq~Aai~lKn~i~~~W~~~~~~~~~~i~~~~k~~ir~~ll~~L~--- 98 (1049)
..|-.+|.++++.+.-+..+-.|+... .+...-.+|+-.+||+|+...+ .+|+..-...|+.++..+.
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~-~~~~~~~FaaqTlr~Ki~~~F~--------~Lp~~~~~slrdsl~thl~~l~ 72 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQK-CDVEALLFAAQTLRNKIQYDFS--------ELPPLTHASLRDSLITHLKELH 72 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHhhHH--------hcCcchhHHHHHHHHHHHHHHH
Confidence 368899999999988777777777654 6899999999999999999988 4888888888997777663
Q ss_pred cCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhhhhhHHHHHHHHHHHHHhcccCCCCcccccccccccccccccc
Q 001585 99 QVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEYQPTDSTSMKGYRIYEFKSDEER 178 (1049)
Q Consensus 99 ~~~~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~~~~~~L~~L~~i~k~~~~~~t~~~~~~~~r~~~~~~~~~~ 178 (1049)
+.++.|++|++.+|+.+|-+- | +|.+-++++++.+++. +.+..++.++.+.+..+.. +.|+ . -....|
T Consensus 73 ~~~~~i~tQL~vavA~Lal~~-~-~W~n~I~e~v~~~~~~--~~~~~~lLeiL~VlPEE~~------~~~~-~-~~a~Rr 140 (559)
T KOG2081|consen 73 DHPDVIRTQLAVAVAALALHM-P-EWVNPIFELVRALSNK--HPAVPILLEILKVLPEETR------DIRL-T-VGANRR 140 (559)
T ss_pred hCCchHHHHHHHHHHHHHHHh-H-hhcchHHHHHHHhhcC--CccHHHHHHHHHhCcHhhc------chhh-h-hhhhhH
Confidence 344499999999999999874 5 8999888888888766 2334444555554421110 0011 0 012223
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHhhhc-cCCc-ccCChhhHHHHHHHHHHHhcCC----
Q 001585 179 TPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYL-EIPK-QLLDPNVFNAWMILFLNVLERP---- 252 (1049)
Q Consensus 179 ~~l~~i~~~~~p~Ll~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~-~lp~-~~~~~~~l~~~~~~~~~~l~~~---- 252 (1049)
..+..-+..-.+.++..+..+++..+ ......+..++|||.+.... .+|. .+. ...+.+......++-.
T Consensus 141 ~e~~~~l~~~~~~~L~~l~~lLe~~~--l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~---a~~pLi~l~F~sl~~~~lhe 215 (559)
T KOG2081|consen 141 HEFIDELAAQVSKVLVFLSDLLERSD--LKSSDDLEQVLRCLGSWLRLHVFPPDQVL---ASFPLITLAFRSLSDDELHE 215 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhcC--CChhhHHHHHHHHHhhhhhhccCCHHHHH---hhhHHHHHHHHHcccchhhH
Confidence 33333333334445555555665332 11256677889999887652 3332 111 1112222222222210
Q ss_pred ---------------------CC-----------CC---CCCCChhhhhhcchHHHHHHHHHHHHHHHHHhCCCCCCChh
Q 001585 253 ---------------------VP-----------SE---GEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPE 297 (1049)
Q Consensus 253 ---------------------~~-----------~~---~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~ 297 (1049)
.+ .. ....++.+ -.+.+++++..+.+.|-.-....++
T Consensus 216 ~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d--------~~~a~~RIFtel~eaf~~~i~~np~ 287 (559)
T KOG2081|consen 216 EATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLD--------KNEAICRIFTELGEAFVVLISTNPE 287 (559)
T ss_pred HHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHH--------HHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 00 00 00001000 0122333333333332110000111
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHhhCCcccCHHHHHHHHHHHHhhcC------CchhhhhchhhHHHHHHHHhhhcc
Q 001585 298 NRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSIS------KNSMYNLLQPRLDVLLFEIVFPLM 371 (1049)
Q Consensus 298 ~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~------~~~~~~~~~~~l~~li~~~i~p~l 371 (1049)
+++..+-.++.-.... ..+++...+.||...-+ ....+..|+|+...++.-+ .+-.
T Consensus 288 --------------~~l~~vellLl~~~h~---~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l-~~h~ 349 (559)
T KOG2081|consen 288 --------------EFLRIVELLLLVAGHN---DTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLL-KRHV 349 (559)
T ss_pred --------------cchhHHHHHHHhccCC---chhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHH-HHHc
Confidence 1222222222222222 23899999999998643 2344567899999988754 5777
Q ss_pred ccChhhHhhhhcCHHHHHhHhcCcccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhH
Q 001585 372 CFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDG 451 (1049)
Q Consensus 372 ~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~kea 451 (1049)
++.+ |.+..-++ .+++.--|....+++++++.-.|... .+..+...+.+ + ...|...||
T Consensus 350 qlp~-~~~~l~Ee-----------~~~f~~fR~~v~dvl~Dv~~iigs~e---~lk~~~~~l~e----~--~~~We~~EA 408 (559)
T KOG2081|consen 350 QLPP-DQFDLPEE-----------ESEFFEFRLKVGDVLKDVAFIIGSDE---CLKQMYIRLKE----N--NASWEEVEA 408 (559)
T ss_pred cCCC-ccccCccc-----------hhHHHHHHHHHHHHHHHHHHHhCcHH---HHHHHHHHHcc----C--CCchHHHHH
Confidence 7766 33222111 22455678888999999988877543 22333333333 1 238999999
Q ss_pred HHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCc
Q 001585 452 ALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELP 531 (1049)
Q Consensus 452 al~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~ 531 (1049)
+|+.+..++..+..... ..+...+ +.+. .+.-+.| +|+.++..+|.|++|.-+.|+.+..++..+...++...
T Consensus 409 aLF~l~~~~~~~~~~e~--~i~pevl-~~i~-nlp~Q~~-~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~-- 481 (559)
T KOG2081|consen 409 ALFILRAVAKNVSPEEN--TIMPEVL-KLIC-NLPEQAP-LRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR-- 481 (559)
T ss_pred HHHHHHHHhccCCcccc--chHHHHH-HHHh-CCccchh-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--
Confidence 99999999988753221 1233322 1121 2222344 99999999999999876677888888888888887655
Q ss_pred hHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh---HHHHHHHHHHHcc
Q 001585 532 VRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFG 588 (1049)
Q Consensus 532 V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~ 588 (1049)
....|+.|+.++|..+ .....++++.+.+-+..+.....+++ +..-++.++.+..
T Consensus 482 ~as~~a~~~~~i~~~c--~~~~~~l~~~~~~l~~~l~~~~~~~e~a~l~~~~s~i~~~lp 539 (559)
T KOG2081|consen 482 LASAAALAFHRICSAC--RVQMTCLIPSLLELIRSLDSTQINEEAACLLQGISLIISNLP 539 (559)
T ss_pred hhHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC
Confidence 7888899999999886 45566666666655555444333332 3334444555543
No 18
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.6e-07 Score=110.67 Aligned_cols=531 Identities=15% Similarity=0.192 Sum_probs=252.5
Q ss_pred cCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhhhh------hHHHHHHHHHHHHHhcccCCCCcccccccccc-c
Q 001585 99 QVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ------QVYGALFVLRILSRKYEYQPTDSTSMKGYRIY-E 171 (1049)
Q Consensus 99 ~~~~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~------~~~~~L~~L~~i~k~~~~~~t~~~~~~~~r~~-~ 171 (1049)
++++.+|+..-.-+..+ +.=|.++..+++.+.++ ++-+++..=+.|.+.++. .+ |++ .
T Consensus 15 d~d~~~R~~AE~~L~q~------~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~---~~------~~g~~ 79 (1010)
T KOG1991|consen 15 DSDAKERKAAEQQLNQL------EKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSS---HE------APGRP 79 (1010)
T ss_pred CCChHHHHHHHHHHHHh------hcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCc---cC------CCCCc
Confidence 45578887755555544 45688999999988776 456777777788888842 00 000 0
Q ss_pred ccc-ccccchHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHhhhccCCcccCChhhHHHHHHHHHHHhc
Q 001585 172 FKS-DEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLE 250 (1049)
Q Consensus 172 ~~~-~~~~~~l~~i~~~~~p~Ll~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~lp~~~~~~~~l~~~~~~~~~~l~ 250 (1049)
+.. ++.|.. +-+.+.+.++ ..+ ..+|...-.|++..+..+.|+.. ..+..|...++ +
T Consensus 80 ~~I~e~dk~~---irenIl~~iv-------~~p------~~iRvql~~~l~~Ii~~D~p~~W---p~l~d~i~~~L---q 137 (1010)
T KOG1991|consen 80 FGIPEEDKAV---IRENILETIV-------QVP------ELIRVQLTACLNTIIKADYPEQW---PGLLDKIKNLL---Q 137 (1010)
T ss_pred CCCChHHHHH---HHHHHHHHHH-------hCc------hHHHHHHHHHHHHHHhcCCcccc---hhHHHHHHHHh---c
Confidence 001 122222 2223333222 111 12233333455666667777533 44555554443 2
Q ss_pred CCCCCCCCCCChhhhhhcchHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHHhhCCccc
Q 001585 251 RPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYL 330 (1049)
Q Consensus 251 ~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~ 330 (1049)
.+ |. . ..--++-++.+++..|.=.+. .+-.+.-. .+..+.|.+++.+.+++.. +.+.
T Consensus 138 s~--------~~-----~----~vy~aLl~l~qL~k~ye~k~~--eeR~~l~~-~v~~~fP~il~~~~~ll~~---~s~~ 194 (1010)
T KOG1991|consen 138 SQ--------DA-----N----HVYGALLCLYQLFKTYEWKKD--EERQPLGE-AVEELFPDILQIFNGLLSQ---ESYQ 194 (1010)
T ss_pred Cc--------ch-----h----hHHHHHHHHHHHHHHHhhccc--cccccHHH-HHHHHHHHHHHHHHhhccc---cchH
Confidence 21 11 1 112356677788887731111 11122222 2345677777777777654 2344
Q ss_pred CHHHHHHHHHHHHhhcCCchhhhhchhh----HHHHHHHHhhhccccChhhHhhhhcCHHHHHhHhcCcccccCCHHHHH
Q 001585 331 PDRVTNLILQYLSNSISKNSMYNLLQPR----LDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTAS 406 (1049)
Q Consensus 331 ~~~~~~~~l~fl~~~~~~~~~~~~~~~~----l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aA 406 (1049)
+-.+...++..+..++-..--..++.+. -.+|+..++- -....+. ...||+. |.. . -.|-.++-|
T Consensus 195 s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~--rpvP~E~---l~~d~e~--R~~-~---~wwK~KKWa 263 (1010)
T KOG1991|consen 195 SVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILN--RPVPVEV---LSLDPED--RSS-W---PWWKCKKWA 263 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHc--CCCChhc---ccCChhh--ccc-c---cchhhHHHH
Confidence 5566666666555544322111122211 1222222221 1122222 2335543 222 1 146678888
Q ss_pred HHHHHHHHHhcccch-----------------HHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCC--
Q 001585 407 MDFVSELVRKRGKEN-----------------LQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTE-- 467 (1049)
Q Consensus 407 ~~ll~~L~~~~~~~~-----------------~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~-- 467 (1049)
...+..++++||+.. ++.+++.....+.++.+ +-|..-+..++++..+........
T Consensus 264 ~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~-----~~yls~rvl~~~l~fl~~~Vs~~~tw 338 (1010)
T KOG1991|consen 264 LHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQ-----QLYLSDRVLYYLLNFLEQCVSHASTW 338 (1010)
T ss_pred HHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cccCCHHHHHHHHHHHHHhccHHHHH
Confidence 888888888887531 11222222222333321 145556666666655554432211
Q ss_pred -CchhhHHHHHHHhhccccC-----------CCCcch-------------------------------------------
Q 001585 468 -PYKSELERMLVQHVFPEFS-----------SPVGHL------------------------------------------- 492 (1049)
Q Consensus 468 -~~~~~~~~~l~~~v~p~l~-----------~~~~~l------------------------------------------- 492 (1049)
-+++++.-++..+|+|.+. +|+-++
T Consensus 339 kll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~I 418 (1010)
T KOG1991|consen 339 KLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDI 418 (1010)
T ss_pred HHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHH
Confidence 1244555666666666653 122222
Q ss_pred ----------------hHHHHHHHHHhhccccCCh----hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccc
Q 001585 493 ----------------RAKAAWVAGQYAHINFSDQ----NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNE 552 (1049)
Q Consensus 493 ----------------r~ra~~~l~~~~~~~f~~~----~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~ 552 (1049)
+.-|+.++|..++..-++. +.=.-+.+.++..++++---.|..||..+..|++..- +
T Consensus 419 l~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df-~-- 495 (1010)
T KOG1991|consen 419 LTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDF-K-- 495 (1010)
T ss_pred HHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccC-C--
Confidence 2223333333322111110 0001122233333344444466666666666664321 1
Q ss_pred cccchHHHHHHHHHHhhhhchh-----hHHHHHHHHHHHcc---CcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhH
Q 001585 553 IRPILPQLLDEFFKLMNEVENE-----DLVFTLETIVDKFG---EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGA 624 (1049)
Q Consensus 553 l~p~l~~il~~L~~ll~~~~~~-----~l~~~l~~iv~~~~---~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~ 624 (1049)
-...+..+++...+.+.+ +++ +...+|++++.... +.+.|+.+.+++.|.. +.++.+.|
T Consensus 496 d~~~l~~ale~t~~~l~~-d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~----L~ne~End-------- 562 (1010)
T KOG1991|consen 496 DPNNLSEALELTHNCLLN-DNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLK----LSNEVEND-------- 562 (1010)
T ss_pred ChHHHHHHHHHHHHHhcc-CCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHH----HHHhcchh--------
Confidence 112233344444444442 222 34567777777554 4488888888887763 23332322
Q ss_pred HHHHHHHHHHHHHHHhhc--CChHHHHHHHhhHHHHHHHHccc--chh----h---HHHHHHHHHHHHhhcCCCCCHHHH
Q 001585 625 LAAVGCLRAISTILESVS--RLPHLFVQIEPTLLPIMRRMLTT--DGQ----E---VFEEVLEIVSYMTFFSPTISLEMW 693 (1049)
Q Consensus 625 ~~~~~~le~i~~ll~~~~--~~~~~~~~l~~~~~p~i~~~l~~--~~~----~---~~~~~l~ll~~l~~~~~~isp~l~ 693 (1049)
-+-.+|.+++...+ -.|- ...+.+.+...+-.++++ +.. + -.-.++.-+++++..-...+.-+.
T Consensus 563 ----~Lt~vme~iV~~fseElsPf-A~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~ 637 (1010)
T KOG1991|consen 563 ----DLTNVMEKIVCKFSEELSPF-AVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK 637 (1010)
T ss_pred ----HHHHHHHHHHHHHHHhhchh-HHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 24456667776663 2342 344666666666667663 111 1 112233333344432222222222
Q ss_pred ----HHHHHHHHHHhhhHhhhHhhhHHhhhhHhhcCc
Q 001585 694 ----SLWPLMMEALADWAIDFFPNILVPLDNYISRGT 726 (1049)
Q Consensus 694 ----~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~ 726 (1049)
.++|.+-..+++...++..+++.++.++....+
T Consensus 638 ~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~ 674 (1010)
T KOG1991|consen 638 QLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSK 674 (1010)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhc
Confidence 334555555667778999999888887655543
No 19
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=5.2e-09 Score=117.12 Aligned_cols=675 Identities=13% Similarity=0.151 Sum_probs=374.4
Q ss_pred hcCCCHHHHHHHHHHHHHh-cc-CCChHHH--------HHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCcCCCCC
Q 001585 13 ALSPNPEERKAAEHSLNQF-QY-TPQHLVR--------LLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKIS 82 (1049)
Q Consensus 13 tls~d~~~r~~AE~~L~~~-~~-~p~f~~~--------Ll~i~~~~~~~~~iRq~Aai~lKn~i~~~W~~~~~~~~~~i~ 82 (1049)
.-+-|-..|..|---||+- .. .+.+..- +++-+.++ +.-||-..+|..-..+.+.-.. .|
T Consensus 57 ~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lgd~--~~lIr~tvGivITTI~s~~~~~----~w---- 126 (885)
T KOG2023|consen 57 AKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLGDA--SPLIRATVGIVITTIASTGGLQ----HW---- 126 (885)
T ss_pred ccccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHhhccCc--hHHHHhhhhheeeeeecccccc----cc----
Confidence 3344566788888888743 22 2222222 33333332 4578888887766555432221 12
Q ss_pred hHHHHHHHHHHHHHhhcCChHHH-------HHHHHHHHHHHHhhCCCC-chhHHHHHHHHhhhh--hH-HHHHHHHHHHH
Q 001585 83 QVDKDMVRDHILVFVAQVPPLLR-------VQLGECLKTIIHADYPEQ-WPHLLDWVKHNLQDQ--QV-YGALFVLRILS 151 (1049)
Q Consensus 83 ~~~k~~ir~~ll~~L~~~~~~ir-------~~l~~~i~~Ia~~d~P~~-Wp~Ll~~l~~~l~s~--~~-~~~L~~L~~i~ 151 (1049)
..+-..|.+.|.+++.... +.+++=.+.+...|++++ -.-++|..++.++++ .+ --|+.|+++++
T Consensus 127 ----pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i 202 (885)
T KOG2023|consen 127 ----PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFI 202 (885)
T ss_pred ----hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhee
Confidence 2345567777765553322 345555555566677643 235889999999877 33 35777888766
Q ss_pred HhcccCCCCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHhhhccCCcc
Q 001585 152 RKYEYQPTDSTSMKGYRIYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQ 231 (1049)
Q Consensus 152 k~~~~~~t~~~~~~~~r~~~~~~~~~~~~l~~i~~~~~p~Ll~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~lp~~ 231 (1049)
-.- + ..+..-+..+...+.. +.+ ++..++++.+|..|-.+... .|..
T Consensus 203 ~~~-------------------~----qal~~~iD~Fle~lFa----lan-----D~~~eVRk~vC~alv~Llev-r~dk 249 (885)
T KOG2023|consen 203 IIQ-------------------T----QALYVHIDKFLEILFA----LAN-----DEDPEVRKNVCRALVFLLEV-RPDK 249 (885)
T ss_pred ecC-------------------c----HHHHHHHHHHHHHHHH----Hcc-----CCCHHHHHHHHHHHHHHHHh-cHHh
Confidence 322 1 1222223333332222 211 23478999999999877643 3555
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHH
Q 001585 232 LLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAG 311 (1049)
Q Consensus 232 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~ 311 (1049)
+. .++...++.++...+. .|++ +--.+|+....+.+. | ..+..+.+|++
T Consensus 250 l~--phl~~IveyML~~tqd--------~dE~---------VALEACEFwla~aeq---p---------i~~~~L~p~l~ 298 (885)
T KOG2023|consen 250 LV--PHLDNIVEYMLQRTQD--------VDEN---------VALEACEFWLALAEQ---P---------ICKEVLQPYLD 298 (885)
T ss_pred cc--cchHHHHHHHHHHccC--------cchh---------HHHHHHHHHHHHhcC---c---------CcHHHHHHHHH
Confidence 55 6788888888765432 2322 223466555544442 2 11223445555
Q ss_pred HHHHHHHHHHHHh-------h-C-C--------------------------------------------cccCHHHHHHH
Q 001585 312 KILECHLNLLNRI-------R-V-G--------------------------------------------GYLPDRVTNLI 338 (1049)
Q Consensus 312 ~~~~~~~~~l~~~-------~-~-~--------------------------------------------~~~~~~~~~~~ 338 (1049)
.++...++-+... . . + .|.-.++-..+
T Consensus 299 kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAa 378 (885)
T KOG2023|consen 299 KLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAA 378 (885)
T ss_pred HHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHH
Confidence 5555443322110 0 0 0 01111222333
Q ss_pred HHHHHhhcCCchhhhhchhhHHHHHHHHhhhccccChhhHhhhhcCHHHHHhHhcCcccccCCHHHHHHHHHHHHHHhcc
Q 001585 339 LQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRG 418 (1049)
Q Consensus 339 l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aA~~ll~~L~~~~~ 418 (1049)
+..++++.. .+++. +++|.+. +.. ..+.|-.|-|+.-.+.++++.--
T Consensus 379 LDVLanvf~------------~elL~-~l~PlLk------------------~~L--~~~~W~vrEagvLAlGAIAEGcM 425 (885)
T KOG2023|consen 379 LDVLANVFG------------DELLP-ILLPLLK------------------EHL--SSEEWKVREAGVLALGAIAEGCM 425 (885)
T ss_pred HHHHHHhhH------------HHHHH-HHHHHHH------------------HHc--CcchhhhhhhhHHHHHHHHHHHh
Confidence 333333211 12222 3445541 111 12356678888888888887532
Q ss_pred c---chHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHH
Q 001585 419 K---ENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAK 495 (1049)
Q Consensus 419 ~---~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~r 495 (1049)
+ +-++.+++|+.++|..- +...|--....++..+..+..... ...+.+.+.. ++.-+-+.+..++-+
T Consensus 426 ~g~~p~LpeLip~l~~~L~DK--------kplVRsITCWTLsRys~wv~~~~~-~~~f~pvL~~-ll~~llD~NK~VQEA 495 (885)
T KOG2023|consen 426 QGFVPHLPELIPFLLSLLDDK--------KPLVRSITCWTLSRYSKWVVQDSR-DEYFKPVLEG-LLRRLLDSNKKVQEA 495 (885)
T ss_pred hhcccchHHHHHHHHHHhccC--------ccceeeeeeeeHhhhhhhHhcCCh-HhhhHHHHHH-HHHHHhcccHHHHHH
Confidence 2 45667888888888652 233333334445555544433221 1122222221 222233788999999
Q ss_pred HHHHHHHhhccccCCh--hHHHHHHHHHHhcCC---CCCCchHHHHHHHHHHHHHhc-ccccccccchHHHHHHHHHHhh
Q 001585 496 AAWVAGQYAHINFSDQ--NNFRKALHSVVSGLR---DPELPVRVDSVFALRSFVEAC-RDLNEIRPILPQLLDEFFKLMN 569 (1049)
Q Consensus 496 a~~~l~~~~~~~f~~~--~~~~~~~~~ll~~L~---d~~~~V~~~Aa~AL~~~~~~~-~~~~~l~p~l~~il~~L~~ll~ 569 (1049)
||-.+.-+.+-- -.+ .++..++..++.+++ ..++.+-.-|..+|..-+.+. +.+.+++=.+|+++++.-.+.+
T Consensus 496 AcsAfAtleE~A-~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd 574 (885)
T KOG2023|consen 496 ACSAFATLEEEA-GEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSD 574 (885)
T ss_pred HHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCc
Confidence 999887775421 111 467777777777774 568888888888888777432 2456677778888887755443
Q ss_pred hhchh--hHHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHhc---ccCCCCCC-ChhHHHHHHHHHHHHHHHHhhcC
Q 001585 570 EVENE--DLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNT---AEADEDAD-DPGALAAVGCLRAISTILESVSR 643 (1049)
Q Consensus 570 ~~~~~--~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~---~~~d~~~~-~~~~~~~~~~le~i~~ll~~~~~ 643 (1049)
+ +.+ -+..++.++...++..+.||+..+.++.+.++.++.+. ...++..+ .|+. +....++.++.++++++.
T Consensus 575 ~-DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkd-fiI~sLDL~SGLaegLg~ 652 (885)
T KOG2023|consen 575 S-DKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKD-FIIVSLDLLSGLAEGLGS 652 (885)
T ss_pred c-cchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcc-eEEEeHHHHhHHHHHhhh
Confidence 2 323 37889999999999999999998888777666544321 11222211 1222 223458889999999876
Q ss_pred ChHHHHHHHhhHHHHHHHHcccchhhHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHhhhHhhhHhhhHHhhhhHh
Q 001585 644 LPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYI 722 (1049)
Q Consensus 644 ~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~-~~isp~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i 722 (1049)
+-+.+. ....+..++-.|++....+....+|.+++-+++.+ ..+-|.+-..+|.+...+.....+...+..-.+.-..
T Consensus 653 ~ie~Lv-a~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia 731 (885)
T KOG2023|consen 653 HIEPLV-AQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIA 731 (885)
T ss_pred chHHHh-hhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHH
Confidence 543222 12346778888998888999999999999999876 5677777777777654433222222222222222221
Q ss_pred -hcCcccccccCCcchHHHHHHHHHHHhcCCC----CCCcccCchhhHHHHHHHhcccCchhchHHHHHHHHHHHHhhhh
Q 001585 723 -SRGTAHFLTCKEPDYQQSLWSMVSSIMADKN----LEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEK 797 (1049)
Q Consensus 723 -~~~~~~~l~~~~~~~~~~i~~i~~~~l~~~~----~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~l~~l~~~~~ 797 (1049)
+.|.+ ...++..++.-.-..++.+. .-+.-+... ..+-..+|..++|+++.+++.-+.++.+-..
T Consensus 732 ~k~g~~------~~~~v~~vl~~L~~iin~~~~~~tllENtAITI----GrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~D 801 (885)
T KOG2023|consen 732 LKMGLK------MKQYVSPVLEDLITIINRQNTPKTLLENTAITI----GRLGYICPEEVAPHLDSFMRPWCTSLRNIDD 801 (885)
T ss_pred HHhchh------hhhHHHHHHHHHHHHhcccCchHHHHHhhhhhh----hhhhccCHHhcchhHHHHHHHHHHHhccccc
Confidence 22221 11344443332222222221 111111112 2233446677899999999999999987555
Q ss_pred hHHHHHHHHHHHHHHhhCHHHHHHH
Q 001585 798 SYLKCLLVQVIADALYYNSSLTLSI 822 (1049)
Q Consensus 798 ~~~~~~~l~v~~~~~~~~p~~~l~~ 822 (1049)
..-+.+...-+|..+..||..+...
T Consensus 802 neEK~sAFrG~c~mi~vNp~~vv~~ 826 (885)
T KOG2023|consen 802 NEEKESAFRGLCNMINVNPSGVVSS 826 (885)
T ss_pred chhHHHHHHHHHHheeeCchhhhhh
Confidence 5555555556777777889876654
No 20
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=7.7e-09 Score=117.89 Aligned_cols=453 Identities=13% Similarity=0.178 Sum_probs=263.4
Q ss_pred HHHHHHHHHHHHhhcCCchhhhhchhhHHHHHHHHhhhccccChhh------HhhhhcCHHHHHhH--hcCcccccCCHH
Q 001585 332 DRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDND------QKLWDEDPHEYVRK--GYDIIEDLYSPR 403 (1049)
Q Consensus 332 ~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d------~e~we~Dp~efi~~--~~d~~~d~~s~R 403 (1049)
.++...++..|..++ .-+|+.+++++.+-+..+-+..|. +++| +|-|..=-+|-+.- +..+.-|.+.+
T Consensus 231 ~~i~~aa~~ClvkIm--~LyY~~m~~yM~~alfaitl~amk-s~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~- 306 (859)
T KOG1241|consen 231 EEIQVAAFQCLVKIM--SLYYEFMEPYMEQALFAITLAAMK-SDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP- 306 (859)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-
Confidence 477788888877775 346788888887755555556665 5554 56676433332221 11111123333
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhcc
Q 001585 404 TASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFP 483 (1049)
Q Consensus 404 ~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p 483 (1049)
++ +.+|-+..++.+++.+.+.|.+...++.+ ++|..--||=..++..+..+.+. +...+-+|+.++
T Consensus 307 p~--------~~~fa~~a~~~v~P~Ll~~L~kqde~~d~-DdWnp~kAAg~CL~l~A~~~~D~--Iv~~Vl~Fiee~--- 372 (859)
T KOG1241|consen 307 PS--------SKYFARQALQDVVPVLLELLTKQDEDDDD-DDWNPAKAAGVCLMLFAQCVGDD--IVPHVLPFIEEN--- 372 (859)
T ss_pred ch--------hhHHHHHHHhHhhHHHHHHHHhCCCCccc-ccCcHHHHHHHHHHHHHHHhccc--chhhhHHHHHHh---
Confidence 12 12233445556677777888775444433 47998888888888888876543 334455555544
Q ss_pred ccCCCCcchhHHHHHHHHHhhccccCCh----hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHH
Q 001585 484 EFSSPVGHLRAKAAWVAGQYAHINFSDQ----NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQ 559 (1049)
Q Consensus 484 ~l~~~~~~lr~ra~~~l~~~~~~~f~~~----~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~ 559 (1049)
+++|+..=|-.|...+|..-+.. ++ ....+.+|.++..|.|+.+-|+.+|+.+|.++++.....-.=.-++++
T Consensus 373 -i~~pdwr~reaavmAFGSIl~gp--~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~ 449 (859)
T KOG1241|consen 373 -IQNPDWRNREAAVMAFGSILEGP--EPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQS 449 (859)
T ss_pred -cCCcchhhhhHHHHHHHhhhcCC--chhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhH
Confidence 46788888888988888875432 22 456788999999999999999999999999999986311111234555
Q ss_pred HHHHHHHHhhhh----chh--hHHHHHHHHHHHc-----cCcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHH
Q 001585 560 LLDEFFKLMNEV----ENE--DLVFTLETIVDKF-----GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAV 628 (1049)
Q Consensus 560 il~~L~~ll~~~----~~~--~l~~~l~~iv~~~-----~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~ 628 (1049)
+++.++.-+++- .+. ....+.+.+-+.. .+...|+...|+..|... ....+. .....+.
T Consensus 450 ~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~----tdr~dg------nqsNLR~ 519 (859)
T KOG1241|consen 450 KLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKV----TDRADG------NQSNLRS 519 (859)
T ss_pred HHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhh----cccccc------chhhHHH
Confidence 555555555432 111 1223333332322 223557888888777643 222221 1233466
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHH----Hcc-----cchhhHHHHHHHHHH----HHhhc-CCCCCHHHHH
Q 001585 629 GCLRAISTILESVSRLPHLFVQIEPTLLPIMRR----MLT-----TDGQEVFEEVLEIVS----YMTFF-SPTISLEMWS 694 (1049)
Q Consensus 629 ~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~----~l~-----~~~~~~~~~~l~ll~----~l~~~-~~~isp~l~~ 694 (1049)
..++++..+|+...+ ++++ +...+.+++.. +++ .+..+=..+.-.+++ .+++. .+.+.+.--+
T Consensus 520 AAYeALmElIk~st~--~vy~-~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~ 596 (859)
T KOG1241|consen 520 AAYEALMELIKNSTD--DVYP-MVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQ 596 (859)
T ss_pred HHHHHHHHHHHcCcH--HHHH-HHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHH
Confidence 789999999987532 2222 23333343333 333 222122223333333 33332 2334333344
Q ss_pred HHHHHHHHHhhhHhhhHh-hhHHhhhhHhhcCcccccccCCcchHHHHHHHHHHHhcCCCCCCcccCchhhHHHHHHHhc
Q 001585 695 LWPLMMEALADWAIDFFP-NILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNC 773 (1049)
Q Consensus 695 l~~~l~~~~~~~~~~~l~-~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~~l~~~~~~~~~~~~a~~ll~~ii~~~ 773 (1049)
+...++..++......++ +.+-.+...+..-..+|. .|+..+.....+-|++. .+..-+..|..++..+.+.+
T Consensus 597 iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~-----kym~~f~pyL~~gL~n~-~e~qVc~~aVglVgdl~raL 670 (859)
T KOG1241|consen 597 IMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFA-----KYMPAFKPYLLMGLSNF-QEYQVCAAAVGLVGDLARAL 670 (859)
T ss_pred HHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHH-----HHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHH
Confidence 445555555432222222 233333333333333455 56776666666666422 12222456788889999999
Q ss_pred ccCchhchHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHhhCHHHHHHHHH
Q 001585 774 KGQVDHWVEPYLRITVERLRRAE-KSYLKCLLVQVIADALYYNSSLTLSILH 824 (1049)
Q Consensus 774 ~~~~~~~l~~il~~~l~~l~~~~-~~~~~~~~l~v~~~~~~~~p~~~l~~L~ 824 (1049)
+..+.||...+++.+++-|++.. ++.+|..++.+|+-+...=...+..+|+
T Consensus 671 ~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~ 722 (859)
T KOG1241|consen 671 EDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLE 722 (859)
T ss_pred HhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999998855 7888988888888775543444444443
No 21
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=99.33 E-value=3.2e-12 Score=109.99 Aligned_cols=75 Identities=36% Similarity=0.602 Sum_probs=66.6
Q ss_pred HHHHHHHhccC-CChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCcCCCCChHHHHHHHHHHHHHhh
Q 001585 24 AEHSLNQFQYT-PQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVA 98 (1049)
Q Consensus 24 AE~~L~~~~~~-p~f~~~Ll~i~~~~~~~~~iRq~Aai~lKn~i~~~W~~~~~~~~~~i~~~~k~~ir~~ll~~L~ 98 (1049)
||++|++++++ |||+.+|++|+.+.+.+..+|++|+++|||.|+++|+......+..+|+++|..||+.|+++|.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 89999999999 9999999999998888999999999999999999999322223345999999999999999885
No 22
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=3.4e-07 Score=112.29 Aligned_cols=142 Identities=18% Similarity=0.317 Sum_probs=118.3
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHhccCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCcCCCC
Q 001585 4 PSLALILQGALSP--NPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (1049)
Q Consensus 4 ~~l~~~L~~tls~--d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iRq~Aai~lKn~i~~~W~~~~~~~~~~i 81 (1049)
.++..++..+++| ++..|.+|.+.|.+++..|.-+.-...|+...+ ...+|.+|--+|-|.|+.+|+. +
T Consensus 10 ~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s~-~~~~k~f~Lqlle~vik~~W~~--------~ 80 (1041)
T KOG2020|consen 10 SELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLST-NPILKYFALQLLENVIKFRWNS--------L 80 (1041)
T ss_pred HHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhccC-CchhheeeHHHHHHHHHHhccc--------C
Confidence 4677788888887 677999999999999999987777777776654 6789999999999999999994 8
Q ss_pred ChHHHHHHHHHHHHHhhc---------CChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhhhh--hHHHHHHHHHHH
Q 001585 82 SQVDKDMVRDHILVFVAQ---------VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QVYGALFVLRIL 150 (1049)
Q Consensus 82 ~~~~k~~ir~~ll~~L~~---------~~~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~--~~~~~L~~L~~i 150 (1049)
|.++|..+|.-++..+.. +.+.++.+++.++-.|++.+||+.||++++++.+....+ .-..++.++..+
T Consensus 81 ~~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~s~~~~el~m~Il~lL 160 (1041)
T KOG2020|consen 81 PVEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKTSETVCELSMIILLLL 160 (1041)
T ss_pred CccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhcCcccchHHHHHHHHH
Confidence 999999999999988742 134588999999999999999999999999999998876 234556666666
Q ss_pred HHhc
Q 001585 151 SRKY 154 (1049)
Q Consensus 151 ~k~~ 154 (1049)
.+++
T Consensus 161 sEdv 164 (1041)
T KOG2020|consen 161 SEEV 164 (1041)
T ss_pred HHHH
Confidence 6665
No 23
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.15 E-value=5.8e-06 Score=91.65 Aligned_cols=456 Identities=12% Similarity=0.125 Sum_probs=260.5
Q ss_pred CHHHHHHHHHHHHhhcCCchhhhhchhhHHHHHHHHhhhccccChhh-----HhhhhcCHHHHHhHhcCcccccCCHHHH
Q 001585 331 PDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDND-----QKLWDEDPHEYVRKGYDIIEDLYSPRTA 405 (1049)
Q Consensus 331 ~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d-----~e~we~Dp~efi~~~~d~~~d~~s~R~a 405 (1049)
..++...++-.+..++ .-+|+.+++++++.+..+....|.-+.++ +|-|..=-+|-+.-+++ +.+-|..-
T Consensus 234 d~e~q~aafgCl~kim--~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e---~~~~pe~p 308 (858)
T COG5215 234 DEELQHAAFGCLNKIM--MLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEME---DKYLPEVP 308 (858)
T ss_pred cHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHH---HhhcccCc
Confidence 3566777777666654 33667888888888877766665444333 46674433332222211 11212111
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhcccc
Q 001585 406 SMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEF 485 (1049)
Q Consensus 406 A~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l 485 (1049)
|.+- .++..--++++| -+..+|.+...++.+ ++|...-||-..+...+..+.++ +..++-.|+. ..+
T Consensus 309 ~qn~--~fa~aav~dvlP----~lL~LL~~q~ed~~~-DdWn~smaA~sCLqlfaq~~gd~--i~~pVl~FvE----qni 375 (858)
T COG5215 309 AQNH--GFARAAVADVLP----ELLSLLEKQGEDYYG-DDWNPSMAASSCLQLFAQLKGDK--IMRPVLGFVE----QNI 375 (858)
T ss_pred hhhc--chHHHHHHHHHH----HHHHHHHhcCCCccc-cccchhhhHHHHHHHHHHHhhhH--hHHHHHHHHH----Hhc
Confidence 1100 000000022333 334455553344433 48998888888887777665442 2223444444 455
Q ss_pred CCCCcchhHHHHHHHHHhhccccCCh--hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccccccc--chHHHH
Q 001585 486 SSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRP--ILPQLL 561 (1049)
Q Consensus 486 ~~~~~~lr~ra~~~l~~~~~~~f~~~--~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p--~l~~il 561 (1049)
++++..=|-.|...+|..-+-..... .+..+.+|.+.+.+.|+.+-|+..+|+|+..+.++. .+.+.| |+++.+
T Consensus 376 ~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v--a~~i~p~~Hl~~~v 453 (858)
T COG5215 376 RSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV--AMIISPCGHLVLEV 453 (858)
T ss_pred cCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH--HHhcCccccccHHH
Confidence 77888888888888887643211111 357888999999999999999999999999998874 444443 455555
Q ss_pred HHHHHHhhh----hchh--hHHHHHHHHHHHc---cCcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHH
Q 001585 562 DEFFKLMNE----VENE--DLVFTLETIVDKF---GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLR 632 (1049)
Q Consensus 562 ~~L~~ll~~----~~~~--~l~~~l~~iv~~~---~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le 632 (1049)
+.++--+.+ .-++ ........+.... ..-+.|+...|+..|+..--+ . .++ ...+...++
T Consensus 454 sa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~----~-~Ne------~n~R~s~fs 522 (858)
T COG5215 454 SASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTEL----A-LNE------SNLRVSLFS 522 (858)
T ss_pred HHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHh----h-ccc------hhHHHHHHH
Confidence 554433322 1111 2333333333332 334667778888777743222 1 121 124557899
Q ss_pred HHHHHHHhhcC-ChHHHHHHHhhHHHHHHHHccc-------c----hhhHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHH
Q 001585 633 AISTILESVSR-LPHLFVQIEPTLLPIMRRMLTT-------D----GQEVFEEVLEIVSYMTFFS-PTISLEMWSLWPLM 699 (1049)
Q Consensus 633 ~i~~ll~~~~~-~~~~~~~l~~~~~p~i~~~l~~-------~----~~~~~~~~l~ll~~l~~~~-~~isp~l~~l~~~l 699 (1049)
++++++....+ -.++...+...+.--+..+++- + ..++....+.++.++++.. +.+.+.--++...+
T Consensus 523 aLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf 602 (858)
T COG5215 523 ALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELF 602 (858)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 99999988643 2334444444444444444331 1 2366677788888888654 44443333344444
Q ss_pred HHHHhhhH-hhhHhhhHHhhhhHhhcCcccccccCCcchHHHHHHHHHHHhcCCCCCCcccCchhhHHHHHHHhcccCch
Q 001585 700 MEALADWA-IDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVD 778 (1049)
Q Consensus 700 ~~~~~~~~-~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~ 778 (1049)
+..+++.. .-...++.-.+.+....-.+.|- .|...+.....+.++-. +-.-...|..++..+...++..+.
T Consensus 603 ~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe-----~y~~~fiPyl~~aln~~--d~~v~~~avglvgdlantl~~df~ 675 (858)
T COG5215 603 IRILESTKPTTAFGDVYTAISALSTSLEERFE-----QYASKFIPYLTRALNCT--DRFVLNSAVGLVGDLANTLGTDFN 675 (858)
T ss_pred HHHHhccCCchhhhHHHHHHHHHHHHHHHHHH-----HHHhhhhHHHHHHhcch--hHHHHHHHHHHHHHHHHHhhhhHH
Confidence 44444321 22334444444444332233343 46666666666766322 222234577788888888888899
Q ss_pred hchHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHhhCHHHHHHHHH
Q 001585 779 HWVEPYLRITVERLRRA-EKSYLKCLLVQVIADALYYNSSLTLSILH 824 (1049)
Q Consensus 779 ~~l~~il~~~l~~l~~~-~~~~~~~~~l~v~~~~~~~~p~~~l~~L~ 824 (1049)
+|...++..+.+-|++. ..+.++..++.+|..+...=...+..+|+
T Consensus 676 ~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~ 722 (858)
T COG5215 676 IYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLD 722 (858)
T ss_pred HHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999874 47788888888888765544445556664
No 24
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.00 E-value=0.00019 Score=84.49 Aligned_cols=648 Identities=14% Similarity=0.164 Sum_probs=323.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH-Hhcc---------CCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCc
Q 001585 8 LILQGALSPNPEERKAAEHSLN-QFQY---------TPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNE 77 (1049)
Q Consensus 8 ~~L~~tls~d~~~r~~AE~~L~-~~~~---------~p~f~~~Ll~i~~~~~~~~~iRq~Aai~lKn~i~~~W~~~~~~~ 77 (1049)
+++....|+|..-|==|..-|. ++++ .+.....|++.+.+. +.+|.+.|.=++--.+.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~--ngEVQnlAVKClg~lvs---------- 76 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDK--NGEVQNLAVKCLGPLVS---------- 76 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHh----------
Confidence 7788888899888877766654 4443 455677888888764 34555555444443331
Q ss_pred CCCCChHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhCC--------CCchhHHHHHHHHhhhh-hH----HHHH
Q 001585 78 QQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP--------EQWPHLLDWVKHNLQDQ-QV----YGAL 144 (1049)
Q Consensus 78 ~~~i~~~~k~~ir~~ll~~L~~~~~~ir~~l~~~i~~Ia~~d~P--------~~Wp~Ll~~l~~~l~s~-~~----~~~L 144 (1049)
.++++.-..+=++|...|.+...+.|-.-+-.+......--| .-.|.+++.+.+.+.-. .. .-+|
T Consensus 77 --Kvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~l 154 (1233)
T KOG1824|consen 77 --KVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVL 154 (1233)
T ss_pred --hchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHH
Confidence 267777788888888887665555555444444444433333 12334444444444322 11 3444
Q ss_pred HHHHHHHHhcccCCCCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHhh
Q 001585 145 FVLRILSRKYEYQPTDSTSMKGYRIYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSI 224 (1049)
Q Consensus 145 ~~L~~i~k~~~~~~t~~~~~~~~r~~~~~~~~~~~~l~~i~~~~~p~Ll~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~ 224 (1049)
..+..+..+|.. + ++.+-+.++....-.++ .....+++.++-++..+.
T Consensus 155 Dil~d~lsr~g~---------------l------------l~~fh~~il~~l~~ql~-----s~R~aVrKkai~~l~~la 202 (1233)
T KOG1824|consen 155 DILADVLSRFGT---------------L------------LPNFHLSILKCLLPQLQ-----SPRLAVRKKAITALGHLA 202 (1233)
T ss_pred HHHHHHHHhhcc---------------c------------CcchHHHHHHHHhhccc-----ChHHHHHHHHHHHHHHHH
Confidence 555555555421 1 11122222222111111 113567887777777665
Q ss_pred hccCCcccCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHH
Q 001585 225 YLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQM 304 (1049)
Q Consensus 225 ~~~lp~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~ 304 (1049)
.. .|. +.+...++.++.-|..+. .. ..++ -..+++..+...-|..+
T Consensus 203 ~~-~~~-----~ly~~li~~Ll~~L~~~~-------q~--------~~~r-t~Iq~l~~i~r~ag~r~------------ 248 (1233)
T KOG1824|consen 203 SS-CNR-----DLYVELIEHLLKGLSNRT-------QM--------SATR-TYIQCLAAICRQAGHRF------------ 248 (1233)
T ss_pred Hh-cCH-----HHHHHHHHHHHhccCCCC-------ch--------HHHH-HHHHHHHHHHHHhcchh------------
Confidence 32 122 344555555544443321 00 0121 23456666666544421
Q ss_pred HHHhhHHHHHHHHHHHHHHhhCCcccCHHHHHHHHHHHHhhcCCchhhhhchhhHHHHHHHHhh------hccccCh-hh
Q 001585 305 FQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVF------PLMCFND-ND 377 (1049)
Q Consensus 305 f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~------p~l~l~~-~d 377 (1049)
..|++.++..+.+.+... ...+|+++..+++-+...+.+-+ +-+.|+.++++.. ++ |+.-+.. +|
T Consensus 249 --~~h~~~ivp~v~~y~~~~---e~~dDELrE~~lQale~fl~rcp--~ei~p~~pei~~l-~l~yisYDPNy~yd~~eD 320 (1233)
T KOG1824|consen 249 --GSHLDKIVPLVADYCNKI---EEDDDELREYCLQALESFLRRCP--KEILPHVPEIINL-CLSYISYDPNYNYDTEED 320 (1233)
T ss_pred --hcccchhhHHHHHHhccc---ccCcHHHHHHHHHHHHHHHHhCh--hhhcccchHHHHH-HHHHhccCCCCCCCCccc
Confidence 224444444443333222 13467888877776665543211 2345666665443 33 4444432 22
Q ss_pred -HhhhhcCHHHHH-hHhc-CcccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHH----HHhcccCC------------
Q 001585 378 -QKLWDEDPHEYV-RKGY-DIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIV----GIFKRYDE------------ 438 (1049)
Q Consensus 378 -~e~we~Dp~efi-~~~~-d~~~d~~s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~----~~l~~~~~------------ 438 (1049)
.+.+.+|-+++- .+++ |+.+-+|-+|+||+.++..+...+.+ .++.+.+-+. ..+..-..
T Consensus 321 ed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E-~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ 399 (1233)
T KOG1824|consen 321 EDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLE-MLPDFYQTLGPALISRFKEREENVKADVFHAYIA 399 (1233)
T ss_pred hhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHH-HHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 233333322211 1111 11122788999999999999876643 3333222211 11111000
Q ss_pred ----CCc--------------C--CCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHH
Q 001585 439 ----TPV--------------E--YKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAW 498 (1049)
Q Consensus 439 ----~~~--------------~--~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~ 498 (1049)
.+. . ..-|..++...+++.++. +.+.+...--|-.++.
T Consensus 400 ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~----------------------~qlr~ks~kt~~~cf~ 457 (1233)
T KOG1824|consen 400 LLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQ----------------------KQLREKSVKTRQGCFL 457 (1233)
T ss_pred HHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHH----------------------HHHhhccccchhhHHH
Confidence 000 0 001222222222222222 2222211112233333
Q ss_pred HHHHhhccccCC-hhHHHHHHHHHHhcCCCC--CCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhh----h
Q 001585 499 VAGQYAHINFSD-QNNFRKALHSVVSGLRDP--ELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE----V 571 (1049)
Q Consensus 499 ~l~~~~~~~f~~-~~~~~~~~~~ll~~L~d~--~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~----~ 571 (1049)
.+.......... .++...++|++...|.|. .-..+..|-..+...+... .++.|.|+++.+..-+.....+ +
T Consensus 458 lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~-~p~~fhp~~~~Ls~~v~~aV~d~fyKi 536 (1233)
T KOG1824|consen 458 LLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISH-PPEVFHPHLSALSPPVVAAVGDPFYKI 536 (1233)
T ss_pred HHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcC-ChhhcccchhhhhhHHHHHhcCchHhh
Confidence 333332211000 145677889999999874 3346777777777777665 4788888888887777666654 2
Q ss_pred chhhHHHHHHHHHHHcc-------CcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCC
Q 001585 572 ENEDLVFTLETIVDKFG-------EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRL 644 (1049)
Q Consensus 572 ~~~~l~~~l~~iv~~~~-------~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~~ 644 (1049)
..| ...+...++.... -+..||+.++.....+. ....+.| . -.+...+.||+.++..+++
T Consensus 537 saE-AL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~r----L~a~d~D------q-eVkeraIscmgq~i~~fgD- 603 (1233)
T KOG1824|consen 537 SAE-ALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQR----LKATDSD------Q-EVKERAISCMGQIIANFGD- 603 (1233)
T ss_pred hHH-HHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHH----Hhccccc------H-HHHHHHHHHHHHHHHHHhh-
Confidence 222 3334455555442 24567777665443322 2222211 1 1344568899999988863
Q ss_pred hHHHHHHHhhHHHHHHHHcccchhhHHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHhh----hHhhhHhhhHHhh
Q 001585 645 PHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP--TISLEMWSLWPLMMEALAD----WAIDFFPNILVPL 718 (1049)
Q Consensus 645 ~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~--~isp~l~~l~~~l~~~~~~----~~~~~l~~~~~~L 718 (1049)
.....-+.++|++..-+.++...+. ++.-++.+....- ..+|.+..++|.+..-+.. ....++..+..++
T Consensus 604 --~l~~eL~~~L~il~eRl~nEiTRl~--AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~ 679 (1233)
T KOG1824|consen 604 --FLGNELPRTLPILLERLGNEITRLT--AVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLV 679 (1233)
T ss_pred --hhhhhhHHHHHHHHHHHhchhHHHH--HHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344557788888888877765442 1222222222221 2356677777766555421 2245666677777
Q ss_pred hhHhhcCcccccccCCcchHHHHHHHHHHHhcCCCCCCcccCchhhHHHHHHHhcccCchhchHHHHHHHHHHHHh
Q 001585 719 DNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR 794 (1049)
Q Consensus 719 ~~~i~~~~~~~l~~~~~~~~~~i~~i~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~l~~l~~ 794 (1049)
.+|...++...+ +.++.=+..+++.. +..-...|..++.+++...+......-.+++..++.-+++
T Consensus 680 ~~~~~~~~~~~~--------e~vL~el~~Lises--dlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~S 745 (1233)
T KOG1824|consen 680 KNYSDSIPAELL--------EAVLVELPPLISES--DLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRS 745 (1233)
T ss_pred HHHhccccHHHH--------HHHHHHhhhhhhHH--HHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhC
Confidence 887665554433 44443333333211 1111234677777777776655444455566666655554
No 25
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.97 E-value=0.00028 Score=83.15 Aligned_cols=506 Identities=14% Similarity=0.179 Sum_probs=279.9
Q ss_pred CCChHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhhhh----hHHHHHHHHHHHHHhcc
Q 001585 80 KISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ----QVYGALFVLRILSRKYE 155 (1049)
Q Consensus 80 ~i~~~~k~~ir~~ll~~L~~~~~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~----~~~~~L~~L~~i~k~~~ 155 (1049)
.+++-+. .|-..++..+.++-..||+..+.+++.++..---.-+-++++.+..-|.++ .+..-..||..|++.-.
T Consensus 167 ll~~fh~-~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag 245 (1233)
T KOG1824|consen 167 LLPNFHL-SILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAG 245 (1233)
T ss_pred cCcchHH-HHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhc
Confidence 3554333 333334444455556799999999999998753355777888887777665 46778889999998763
Q ss_pred cCCCCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHhhhccCCcccCCh
Q 001585 156 YQPTDSTSMKGYRIYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDP 235 (1049)
Q Consensus 156 ~~~t~~~~~~~~r~~~~~~~~~~~~l~~i~~~~~p~Ll~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~lp~~~~~~ 235 (1049)
+ ||. .-+..+.|.+.++.+..-.+ -.+++..++..+..+... -|....
T Consensus 246 -----------~---r~~---------~h~~~ivp~v~~y~~~~e~~------dDELrE~~lQale~fl~r-cp~ei~-- 293 (1233)
T KOG1824|consen 246 -----------H---RFG---------SHLDKIVPLVADYCNKIEED------DDELREYCLQALESFLRR-CPKEIL-- 293 (1233)
T ss_pred -----------c---hhh---------cccchhhHHHHHHhcccccC------cHHHHHHHHHHHHHHHHh-Chhhhc--
Confidence 2 221 12334567777766554111 247787888888776532 233322
Q ss_pred hhHHHHHHHHHHHhcCCCCCC-CCCCCh----------hh------hhhcchHHHHHHHHHHHHHHHHHhCCCCCCChhh
Q 001585 236 NVFNAWMILFLNVLERPVPSE-GEPADP----------EQ------RKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPEN 298 (1049)
Q Consensus 236 ~~l~~~~~~~~~~l~~~~~~~-~~~~d~----------~~------~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~ 298 (1049)
.+.+...++++..++++..-. ...+|+ ++ -+..--||+|+.+.+++..++.... |+
T Consensus 294 p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~-------E~ 366 (1233)
T KOG1824|consen 294 PHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRL-------EM 366 (1233)
T ss_pred ccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccH-------HH
Confidence 456667778888888762210 000000 00 0112239999999999988776521 21
Q ss_pred HH-HH--------HHHH---HhhHHHHHHHHHHHHHHhhCC-ccc--CHHHHHHHHHHHHhhcCCchhhhhchhhHHHHH
Q 001585 299 RA-FA--------QMFQ---KNYAGKILECHLNLLNRIRVG-GYL--PDRVTNLILQYLSNSISKNSMYNLLQPRLDVLL 363 (1049)
Q Consensus 299 ~~-f~--------~~f~---~~~~~~~~~~~~~~l~~~~~~-~~~--~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li 363 (1049)
-+ |. ..|- .+.-..++..+..++.++..- .|. .|+.-. -..+.-...+......|+
T Consensus 367 L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~---------~g~~s~~~~L~~~~~~iV 437 (1233)
T KOG1824|consen 367 LPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQ---------GGTPSDLSMLSDQVPLIV 437 (1233)
T ss_pred HHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhc---------cCCccchHHHHhhhHHHH
Confidence 10 00 0010 111222333343333332110 010 011000 001111122333333333
Q ss_pred HHHhhhccccChhhHhhhhcCHHHHHhHhcCcccccCCHHHHHHHHHHHHHHhcccchHH---HHHHHHHHHhcccCCCC
Q 001585 364 FEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQ---KFIQFIVGIFKRYDETP 440 (1049)
Q Consensus 364 ~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aA~~ll~~L~~~~~~~~~~---~~~~~i~~~l~~~~~~~ 440 (1049)
. .|-+.| | ++.---|.++..+|.++...++....+ .+++-|.-.|+...
T Consensus 438 k-ai~~ql------------------r------~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkS--- 489 (1233)
T KOG1824|consen 438 K-AIQKQL------------------R------EKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKS--- 489 (1233)
T ss_pred H-HHHHHH------------------h------hccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCcc---
Confidence 2 121211 1 112225778888999998887653333 23333333333321
Q ss_pred cCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccc--------cCChh
Q 001585 441 VEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN--------FSDQN 512 (1049)
Q Consensus 441 ~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~--------f~~~~ 512 (1049)
...-..+++..++.+++...-.+. +. +..+-+.+.|.-...++++-+-+-|+.+.++|+.+. |....
T Consensus 490 --sss~~ki~~L~fl~~~L~s~~p~~--fh-p~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~ 564 (1233)
T KOG1824|consen 490 --SSSNLKIDALVFLYSALISHPPEV--FH-PHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASP 564 (1233)
T ss_pred --chHHHHHHHHHHHHHHHhcCChhh--cc-cchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCCh
Confidence 114577888888877776542210 11 122333334444455778888899999999997642 22235
Q ss_pred HHHHHHHHHHhcCC--CCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhh-hchhhHHHHHHHHHHH-cc
Q 001585 513 NFRKALHSVVSGLR--DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE-VENEDLVFTLETIVDK-FG 588 (1049)
Q Consensus 513 ~~~~~~~~ll~~L~--d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~-~~~~~l~~~l~~iv~~-~~ 588 (1049)
....++...++.|. |.+.-||..|..|+..++... .+.+...++.++..++.-+++ +.--....++.-|+.. ..
T Consensus 565 ~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~f--gD~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~ 642 (1233)
T KOG1824|consen 565 YVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANF--GDFLGNELPRTLPILLERLGNEITRLTAVKALTLIAMSPLD 642 (1233)
T ss_pred hHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH--hhhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccce
Confidence 78999999999985 678889999999999999884 688888888888888776653 2222334444444432 22
Q ss_pred CcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcC--ChHHHHHHHhhHHHHHHHHcccc
Q 001585 589 EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSR--LPHLFVQIEPTLLPIMRRMLTTD 666 (1049)
Q Consensus 589 ~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~--~~~~~~~l~~~~~p~i~~~l~~~ 666 (1049)
=.+.|....+...|.+.+-+ . ..-.+...+.++..++...+. .++.+..+-..+.|+|...
T Consensus 643 i~l~~~l~~il~~l~~flrK-~------------~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lises---- 705 (1233)
T KOG1824|consen 643 IDLSPVLTEILPELASFLRK-N------------QRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISES---- 705 (1233)
T ss_pred eehhhhHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHH----
Confidence 33456666666666643322 1 112345678888888887643 3444444444445544433
Q ss_pred hhhHHHHHHHHHHHHhhcCC
Q 001585 667 GQEVFEEVLEIVSYMTFFSP 686 (1049)
Q Consensus 667 ~~~~~~~~l~ll~~l~~~~~ 686 (1049)
.-...+.++.++..++...+
T Consensus 706 dlhvt~~a~~~L~tl~~~~p 725 (1233)
T KOG1824|consen 706 DLHVTQLAVAFLTTLAIIQP 725 (1233)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 22356778888888875443
No 26
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.66 E-value=1.8e-07 Score=91.98 Aligned_cols=134 Identities=25% Similarity=0.410 Sum_probs=95.5
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhhhh--hHHHHHHHHHHHHHhcccCCCCcccccccccccccccccc
Q 001585 101 PPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QVYGALFVLRILSRKYEYQPTDSTSMKGYRIYEFKSDEER 178 (1049)
Q Consensus 101 ~~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~--~~~~~L~~L~~i~k~~~~~~t~~~~~~~~r~~~~~~~~~~ 178 (1049)
|+.|+++++.+++.|+.+|||++||++++++++.++++ ....+|.+|..+.+++..+. | ...+.+.|
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~---------~--~~~~~~r~ 69 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSSPQHLELVLRILRILPEEITDFR---------R--SSLSQERR 69 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSH---------C--CHSHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhh---------c--hhhhHHHH
Confidence 46799999999999999999999999999999999986 56788888888888873100 0 01122345
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHhhhccCCcc-cCChhhHHHHHHHHHHHhcC
Q 001585 179 TPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQ-LLDPNVFNAWMILFLNVLER 251 (1049)
Q Consensus 179 ~~l~~i~~~~~p~Ll~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~lp~~-~~~~~~l~~~~~~~~~~l~~ 251 (1049)
..+...+...+|.+++++.+.+..... ....++...+++|+.+++. .+|.. +.+ .++++.+..+++.
T Consensus 70 ~~l~~~l~~~~~~i~~~l~~~l~~~~~-~~~~~~~~~~L~~l~s~i~-~~~~~~i~~----~~~l~~~~~~l~~ 137 (148)
T PF08389_consen 70 RELKDALRSNSPDILEILSQILSQSSS-EANEELVKAALKCLKSWIS-WIPIELIIN----SNLLNLIFQLLQS 137 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCH-CCHHHHHHHHHHHHHHHTT-TS-HHHHHS----SSHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHHH-hCCHHHhcc----HHHHHHHHHHcCC
Confidence 677788888889999988888765321 1126788899999999876 33322 221 1256666777643
No 27
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.14 E-value=0.014 Score=70.58 Aligned_cols=503 Identities=16% Similarity=0.204 Sum_probs=267.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcc---CC-ChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCcCC
Q 001585 4 PSLALILQGALSPNPEERKAAEHSLNQFQY---TP-QHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQ 79 (1049)
Q Consensus 4 ~~l~~~L~~tls~d~~~r~~AE~~L~~~~~---~p-~f~~~Ll~i~~~~~~~~~iRq~Aai~lKn~i~~~W~~~~~~~~~ 79 (1049)
+++..++...- .+...|+.|=..|-.+.. .. .+....+..+. +.+...|.++=+++.....
T Consensus 7 ~el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~--s~~~~~Krl~yl~l~~~~~------------ 71 (526)
T PF01602_consen 7 QELAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLIS--SKDLELKRLGYLYLSLYLH------------ 71 (526)
T ss_dssp HHHHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCS--SSSHHHHHHHHHHHHHHTT------------
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhC--CCCHHHHHHHHHHHHHHhh------------
Confidence 56677776654 566677777666655432 11 12333444433 3478899999998887642
Q ss_pred CCChHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhhhh--hH-HHHHHHHHHHHHhccc
Q 001585 80 KISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QV-YGALFVLRILSRKYEY 156 (1049)
Q Consensus 80 ~i~~~~k~~ir~~ll~~L~~~~~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~--~~-~~~L~~L~~i~k~~~~ 156 (1049)
-.++.--.+-+.+..-|.++++.+|...-.+++.|+ -|+-.|.+++.+.+++.++ .+ ..|+.++.++++.+.
T Consensus 72 -~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p- 146 (526)
T PF01602_consen 72 -EDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDP- 146 (526)
T ss_dssp -TSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH-
T ss_pred -cchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCH-
Confidence 234444555666667777888889977767777766 4456889999999999877 34 578889999988762
Q ss_pred CCCCccccccccccccccccccchHHHHHHH-HHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHhhhccCCcccCCh
Q 001585 157 QPTDSTSMKGYRIYEFKSDEERTPVYRIVEE-TFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDP 235 (1049)
Q Consensus 157 ~~t~~~~~~~~r~~~~~~~~~~~~l~~i~~~-~~p~Ll~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~lp~~~~~~ 235 (1049)
. .++. ++|.+.+ ++.+.+ ..++..++.++..+ . .-|....
T Consensus 147 --------------~------------~~~~~~~~~l~~----lL~d~~-----~~V~~~a~~~l~~i-~-~~~~~~~-- 187 (526)
T PF01602_consen 147 --------------D------------LVEDELIPKLKQ----LLSDKD-----PSVVSAALSLLSEI-K-CNDDSYK-- 187 (526)
T ss_dssp --------------C------------CHHGGHHHHHHH----HTTHSS-----HHHHHHHHHHHHHH-H-CTHHHHT--
T ss_pred --------------H------------HHHHHHHHHHhh----hccCCc-----chhHHHHHHHHHHH-c-cCcchhh--
Confidence 1 1111 2344433 333222 45566667777666 1 1111111
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHH
Q 001585 236 NVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILE 315 (1049)
Q Consensus 236 ~~l~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~ 315 (1049)
..+......+.+++..+ .| |....+.+++.+|... .++.. .. ..+++
T Consensus 188 ~~~~~~~~~L~~~l~~~---------------~~------~~q~~il~~l~~~~~~---~~~~~-------~~--~~~i~ 234 (526)
T PF01602_consen 188 SLIPKLIRILCQLLSDP---------------DP------WLQIKILRLLRRYAPM---EPEDA-------DK--NRIIE 234 (526)
T ss_dssp THHHHHHHHHHHHHTCC---------------SH------HHHHHHHHHHTTSTSS---SHHHH-------HH--HHHHH
T ss_pred hhHHHHHHHhhhccccc---------------ch------HHHHHHHHHHHhcccC---Chhhh-------hH--HHHHH
Confidence 23455555555554321 12 2333333455555321 11100 00 23444
Q ss_pred HHHHHHHHhhCCcccCHHHHHHHHHHHHhhcCCchhhhhchhhHHHHHHHHhhhccccChhhHhhhhcCHHHHHhHhcCc
Q 001585 316 CHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDI 395 (1049)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~ 395 (1049)
.+...+.. .+..++..++..+..+...... +..++..++ ..+.
T Consensus 235 ~l~~~l~s------~~~~V~~e~~~~i~~l~~~~~~-------~~~~~~~L~-~lL~----------------------- 277 (526)
T PF01602_consen 235 PLLNLLQS------SSPSVVYEAIRLIIKLSPSPEL-------LQKAINPLI-KLLS----------------------- 277 (526)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHSSSHHH-------HHHHHHHHH-HHHT-----------------------
T ss_pred HHHHHhhc------cccHHHHHHHHHHHHhhcchHH-------HHhhHHHHH-HHhh-----------------------
Confidence 44444432 2356777777777765544331 111111111 1110
Q ss_pred ccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHH
Q 001585 396 IEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELER 475 (1049)
Q Consensus 396 ~~d~~s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~ 475 (1049)
+.....|-.|.+.|..++...+..+... ......+.. + ++.-.|--++.++..++..- ++..
T Consensus 278 -s~~~nvr~~~L~~L~~l~~~~~~~v~~~--~~~~~~l~~---~----~d~~Ir~~~l~lL~~l~~~~--------n~~~ 339 (526)
T PF01602_consen 278 -SSDPNVRYIALDSLSQLAQSNPPAVFNQ--SLILFFLLY---D----DDPSIRKKALDLLYKLANES--------NVKE 339 (526)
T ss_dssp -SSSHHHHHHHHHHHHHHCCHCHHHHGTH--HHHHHHHHC---S----SSHHHHHHHHHHHHHH--HH--------HHHH
T ss_pred -cccchhehhHHHHHHHhhcccchhhhhh--hhhhheecC---C----CChhHHHHHHHHHhhccccc--------chhh
Confidence 0123367777788888777663322211 111222221 0 13345556666666665431 2222
Q ss_pred HHHHhhccccC-CCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccc
Q 001585 476 MLVQHVFPEFS-SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIR 554 (1049)
Q Consensus 476 ~l~~~v~p~l~-~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~ 554 (1049)
. ...+...+. .+.+-+|..++..++..+. .+ +.....+++.+++.+...+..+...+...+..++...+ ..
T Consensus 340 I-l~eL~~~l~~~~d~~~~~~~i~~I~~la~-~~--~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~---~~- 411 (526)
T PF01602_consen 340 I-LDELLKYLSELSDPDFRRELIKAIGDLAE-KF--PPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNP---EL- 411 (526)
T ss_dssp H-HHHHHHHHHHC--HHHHHHHHHHHHHHHH-HH--GSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHST---TT-
T ss_pred H-HHHHHHHHHhccchhhhhhHHHHHHHHHh-cc--CchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcCh---hh-
Confidence 2 223333442 2355588888888888875 22 22457777888888877666778888888888887642 11
Q ss_pred cchHHHHHHHHHHhhhhchhhHHHHHHHHHHHccCcccc--cHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHH
Q 001585 555 PILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAP--YALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLR 632 (1049)
Q Consensus 555 p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p--~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le 632 (1049)
-..++..|+..+.+.+...+..++--++..|++.+.. .+.++...+.+.|.. +.......++.
T Consensus 412 --~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~vk~~ilt 476 (526)
T PF01602_consen 412 --REKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIE-------------ESPEVKLQILT 476 (526)
T ss_dssp --HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTT-------------SHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhcc-------------ccHHHHHHHHH
Confidence 2346777788777766555544444444445444433 455666555543211 12334556777
Q ss_pred HHHHHHHhhcCChHHHHHHHhhHHHHHHHHcc--cchhhHHHHHHHHHHHH
Q 001585 633 AISTILESVSRLPHLFVQIEPTLLPIMRRMLT--TDGQEVFEEVLEIVSYM 681 (1049)
Q Consensus 633 ~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~--~~~~~~~~~~l~ll~~l 681 (1049)
++..+....... + ..+.+.+.+..... ....+.-+.+.+.+..+
T Consensus 477 ~~~Kl~~~~~~~-~----~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 477 ALAKLFKRNPEN-E----VQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHHHHHSCST-T----HHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCch-h----hHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 777776554211 1 22244444444444 33556777777766654
No 28
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.0081 Score=75.03 Aligned_cols=198 Identities=14% Similarity=0.255 Sum_probs=131.2
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccC----CCCcchhHHHHHHHHHhhccccCC----hhHHHH
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS----SPVGHLRAKAAWVAGQYAHINFSD----QNNFRK 516 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~----~~~~~lr~ra~~~l~~~~~~~f~~----~~~~~~ 516 (1049)
.|..|-||-+.+|.++..-. ..+++++.+ ++|-|- +|.+-++..-.. -|-...-.+ .+++..
T Consensus 970 ~wnSk~GaAfGf~~i~~~a~------~kl~p~l~k-LIPrLyRY~yDP~~~Vq~aM~s---IW~~Li~D~k~~vd~y~ne 1039 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQAG------EKLEPYLKK-LIPRLYRYQYDPDKKVQDAMTS---IWNALITDSKKVVDEYLNE 1039 (1702)
T ss_pred hhhcccchhhchHHHHHHHH------HhhhhHHHH-hhHHHhhhccCCcHHHHHHHHH---HHHHhccChHHHHHHHHHH
Confidence 69999999999999998753 356777754 556542 677767664322 232222111 167888
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchh------hHHHHHHHHHHHccCc
Q 001585 517 ALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE------DLVFTLETIVDKFGEE 590 (1049)
Q Consensus 517 ~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~------~l~~~l~~iv~~~~~~ 590 (1049)
++.-++..|.+..-+||.++|.||..+++.. ..+.+...++.+...+|+.+.++... ....++..++.+..+-
T Consensus 1040 Il~eLL~~lt~kewRVReasclAL~dLl~g~-~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~ 1118 (1702)
T KOG0915|consen 1040 ILDELLVNLTSKEWRVREASCLALADLLQGR-PFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDV 1118 (1702)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999999999999999999999999999987 46778889999999999999876542 2556777776666665
Q ss_pred cccc-HHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcc
Q 001585 591 MAPY-ALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLT 664 (1049)
Q Consensus 591 i~p~-~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~ 664 (1049)
..+- +.+.+..+.+.++ ..+... ..+-.+...+.++..++.+.+ ..+....+.++|.+...+.
T Consensus 1119 ~~~~~~~~~l~~iLPfLl---~~gims-----~v~evr~~si~tl~dl~Kssg---~~lkP~~~~LIp~ll~~~s 1182 (1702)
T KOG0915|consen 1119 TNGAKGKEALDIILPFLL---DEGIMS-----KVNEVRRFSIGTLMDLAKSSG---KELKPHFPKLIPLLLNAYS 1182 (1702)
T ss_pred CCcccHHHHHHHHHHHHh---ccCccc-----chHHHHHHHHHHHHHHHHhch---hhhcchhhHHHHHHHHHcc
Confidence 5443 3455555554443 322210 112223355677777776653 2333445566777666654
No 29
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.98 E-value=0.014 Score=67.62 Aligned_cols=382 Identities=16% Similarity=0.187 Sum_probs=201.1
Q ss_pred CCHHHHHHHHHHHHHHh---cccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHH
Q 001585 400 YSPRTASMDFVSELVRK---RGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERM 476 (1049)
Q Consensus 400 ~s~R~aA~~ll~~L~~~---~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~ 476 (1049)
--+|.-++..+..|++. ||-+.+..++.-+..-+.+. .-+.--|-|.|+|.+...+.. ....+
T Consensus 567 qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~h--------rgk~laafLkAigyliplmd~------eya~y 632 (1172)
T KOG0213|consen 567 QKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQH--------RGKELAAFLKAIGYLIPLMDA------EYASY 632 (1172)
T ss_pred hhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHc--------cChHHHHHHHHHhhccccccH------HHHHH
Confidence 34677777777777775 45455555555554444432 224455667777766544322 12222
Q ss_pred HH----HhhccccCCCCcchhHHHHHHHHHhhccccCChhH-HHH-----------------------------------
Q 001585 477 LV----QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN-FRK----------------------------------- 516 (1049)
Q Consensus 477 l~----~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~-~~~----------------------------------- 516 (1049)
+. -.+.-++++|.--++-..+.++.|.+...=-.+++ ...
T Consensus 633 yTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~Kv 712 (1172)
T KOG0213|consen 633 YTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKV 712 (1172)
T ss_pred hHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHh
Confidence 22 23445667776555555566665554311001100 111
Q ss_pred ----HHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh--HHHHHHHHHHHccCc
Q 001585 517 ----ALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED--LVFTLETIVDKFGEE 590 (1049)
Q Consensus 517 ----~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~--l~~~l~~iv~~~~~~ 590 (1049)
++..++.-+.|...+-|-.++.++.+++......+.=...-+.++.+++..+++-+.+. +...+.+++..++..
T Consensus 713 G~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r 792 (1172)
T KOG0213|consen 713 GSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGR 792 (1172)
T ss_pred CchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhc
Confidence 12233333344455566666666666665543111112234456666666666554443 456788889999999
Q ss_pred ccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccchhhH
Q 001585 591 MAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEV 670 (1049)
Q Consensus 591 i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~ 670 (1049)
+.||.++||... +|++-+. .+..+.....+++.+...++...+ ..+-..+--++..-|..+..+.
T Consensus 793 ~kpylpqi~sti---L~rLnnk----------sa~vRqqaadlis~la~Vlktc~e--e~~m~~lGvvLyEylgeeypEv 857 (1172)
T KOG0213|consen 793 VKPYLPQICSTI---LWRLNNK----------SAKVRQQAADLISSLAKVLKTCGE--EKLMGHLGVVLYEYLGEEYPEV 857 (1172)
T ss_pred cccchHHHHHHH---HHHhcCC----------ChhHHHHHHHHHHHHHHHHHhccH--HHHHHHhhHHHHHhcCcccHHH
Confidence 999999998754 4554221 122344556666666665543221 2233444445555666666677
Q ss_pred HHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHHhhhHhhhHhhhHHhhhhHhhcCcccccccCCcchHHHHHHHHHHH
Q 001585 671 FEEVLEIVSYMTFFS--PTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSI 748 (1049)
Q Consensus 671 ~~~~l~ll~~l~~~~--~~isp~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~~ 748 (1049)
+..++.-+.+++... .+..|..-+++|.+.-.+++...-...+++.++......|++.+-. .+.+..-|+.+.-+
T Consensus 858 LgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~a---REWMRIcfeLlelL 934 (1172)
T KOG0213|consen 858 LGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSA---REWMRICFELLELL 934 (1172)
T ss_pred HHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCH---HHHHHHHHHHHHHH
Confidence 777777777766532 3345556677777777776554556667778888888888874321 14444444444333
Q ss_pred hcCCCCCCcccCchhhHHHHHHHhcccCchhchHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHhhCHHHHHHHHH
Q 001585 749 MADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAE--KSYLKCLLVQVIADALYYNSSLTLSILH 824 (1049)
Q Consensus 749 l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~l~~l~~~~--~~~~~~~~l~v~~~~~~~~p~~~l~~L~ 824 (1049)
-+.++.- +..|..-...|....+.+ +++..++..|...+ ........+.+++- ...|-.++..|-
T Consensus 935 kahkK~i---RRaa~nTfG~IakaIGPq------dVLatLlnnLkvqeRq~RvcTtvaIaIVaE--~c~pFtVLPalm 1001 (1172)
T KOG0213|consen 935 KAHKKEI---RRAAVNTFGYIAKAIGPQ------DVLATLLNNLKVQERQNRVCTTVAIAIVAE--TCGPFTVLPALM 1001 (1172)
T ss_pred HHHHHHH---HHHHHhhhhHHHHhcCHH------HHHHHHHhcchHHHHHhchhhhhhhhhhhh--hcCchhhhHHHH
Confidence 2222100 112333333333333322 67777777765432 22222222444443 245555665554
No 30
>PTZ00429 beta-adaptin; Provisional
Probab=97.90 E-value=0.14 Score=62.83 Aligned_cols=126 Identities=13% Similarity=0.160 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHh
Q 001585 401 SPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQH 480 (1049)
Q Consensus 401 s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~ 480 (1049)
..|+.|...+..++.+++. ....++.++.+++... .+. ..+ ++..+..+ +.+. |-..-+.. +...
T Consensus 383 ef~r~aIrAIg~lA~k~~~-~a~~cV~~Ll~ll~~~-------~~~-v~e-~i~vik~I---lrky-P~~~il~~-L~~~ 447 (746)
T PTZ00429 383 VFVVEVVRAIASLAIKVDS-VAPDCANLLLQIVDRR-------PEL-LPQ-VVTAAKDI---VRKY-PELLMLDT-LVTD 447 (746)
T ss_pred HHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHhcCC-------chh-HHH-HHHHHHHH---HHHC-ccHHHHHH-HHHh
Confidence 3567778888888888854 5556667666666431 021 223 33333333 3322 21111111 1111
Q ss_pred h-ccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001585 481 V-FPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 547 (1049)
Q Consensus 481 v-~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~ 547 (1049)
+ .+. -.+|-.|+..+|++|+|++.. +....++..++..+.+.+..||.+...|...+.-..
T Consensus 448 ~~~~~--i~e~~AKaaiiWILGEy~~~I----~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~ 509 (746)
T PTZ00429 448 YGADE--VVEEEAKVSLLWMLGEYCDFI----ENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRD 509 (746)
T ss_pred hcccc--cccHHHHHHHHHHHHhhHhhH----hhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcC
Confidence 1 112 246889999999999998743 124566666667777777889999888888777654
No 31
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.80 E-value=0.38 Score=64.57 Aligned_cols=250 Identities=12% Similarity=0.051 Sum_probs=146.1
Q ss_pred chhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHH-----HHHHHH
Q 001585 446 YRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNF-----RKALHS 520 (1049)
Q Consensus 446 w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~-----~~~~~~ 520 (1049)
-..++.+..++..++.+-.+.. ..-...-..+.++..|.++++-+|..|+|.++.++.. +.+.. ...+|.
T Consensus 418 ~evQ~~Av~aL~~L~~~~~e~~--~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~---ndenr~aIieaGaIP~ 492 (2102)
T PLN03200 418 ADVQEELIRALSSLCCGKGGLW--EALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDE---VDESKWAITAAGGIPP 492 (2102)
T ss_pred HHHHHHHHHHHHHHhCCCHHHH--HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---CHHHHHHHHHCCCHHH
Confidence 3566777777777764411100 0000000123344456677889999999999998752 22221 346899
Q ss_pred HHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchH--HHHHHHHHHhhhhchhh---HHHHHHHHHHHccCcccccH
Q 001585 521 VVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILP--QLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMAPYA 595 (1049)
Q Consensus 521 ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~--~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~~~i~p~~ 595 (1049)
++++|.+++..+|..|++||.+++.+. +..+..+. ..+..|+.+++..+.+. ...+|..++.....+
T Consensus 493 LV~LL~s~~~~iqeeAawAL~NLa~~~---~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~----- 564 (2102)
T PLN03200 493 LVQLLETGSQKAKEDSATVLWNLCCHS---EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA----- 564 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCc---HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-----
Confidence 999999888899999999999999753 22222221 34555666666554433 333444444332222
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHH-HHHhhHHHHHHHHcccchhhHHHHH
Q 001585 596 LGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFV-QIEPTLLPIMRRMLTTDGQEVFEEV 674 (1049)
Q Consensus 596 ~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~~~~~~~-~l~~~~~p~i~~~l~~~~~~~~~~~ 674 (1049)
.+..|+ .++.. ++ +.....+++.++.++........... ......+|.+...++++.....+++
T Consensus 565 --~I~~Lv----~LLls--dd-------~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~A 629 (2102)
T PLN03200 565 --TISQLT----ALLLG--DL-------PESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKA 629 (2102)
T ss_pred --HHHHHH----HHhcC--CC-------hhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHH
Confidence 122233 22221 11 22334578888888776543211100 1123578999999998888999999
Q ss_pred HHHHHHHhhcCCCCCHHH--HHHHHHHHHHHhhhHhhhHhhhHHhhhhHhh
Q 001585 675 LEIVSYMTFFSPTISLEM--WSLWPLMMEALADWAIDFFPNILVPLDNYIS 723 (1049)
Q Consensus 675 l~ll~~l~~~~~~isp~l--~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~ 723 (1049)
..++..+....+.+...+ -..+|.++..+.....+.-.+....|.+...
T Consensus 630 a~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~ 680 (2102)
T PLN03200 630 ASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSR 680 (2102)
T ss_pred HHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 999999886554432222 2456777777765555666666677766654
No 32
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.79 E-value=0.011 Score=71.59 Aligned_cols=203 Identities=15% Similarity=0.156 Sum_probs=123.4
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHH-HHHHHHh
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRK-ALHSVVS 523 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~-~~~~ll~ 523 (1049)
|...+-.||..++.++.. .+-+-+...|...+.+++|++|..|+.++.++... .|+.... +++.+.+
T Consensus 92 n~~~~~lAL~~l~~i~~~---------~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~---~p~~~~~~~~~~l~~ 159 (526)
T PF01602_consen 92 NPYIRGLALRTLSNIRTP---------EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK---DPDLVEDELIPKLKQ 159 (526)
T ss_dssp SHHHHHHHHHHHHHH-SH---------HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CHCCHHGGHHHHHHH
T ss_pred CHHHHHHHHhhhhhhccc---------chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHhh
Confidence 667888999999887632 23344556777788899999999999999998653 3445555 7999999
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHHccCcccccH--HHHHHH
Q 001585 524 GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYA--LGLCQN 601 (1049)
Q Consensus 524 ~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~--~~l~~~ 601 (1049)
.|.|+++.|+..|+.++..+ .. .+....+.++.++..|.+++...+.-....+++.+....... .... ..+++.
T Consensus 160 lL~d~~~~V~~~a~~~l~~i-~~--~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~-~~~~~~~~~i~~ 235 (526)
T PF01602_consen 160 LLSDKDPSVVSAALSLLSEI-KC--NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME-PEDADKNRIIEP 235 (526)
T ss_dssp HTTHSSHHHHHHHHHHHHHH-HC--THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS-HHHHHHHHHHHH
T ss_pred hccCCcchhHHHHHHHHHHH-cc--CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC-hhhhhHHHHHHH
Confidence 99999999999999999988 22 122223677777777777764443223333443333222111 1111 123333
Q ss_pred HHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccchhhHHHHHHHHHHHH
Q 001585 602 LAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYM 681 (1049)
Q Consensus 602 L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~l 681 (1049)
+. ...++. ...-+++++..++.... .+. +...+++.+...+........--+++.+..+
T Consensus 236 l~----~~l~s~------------~~~V~~e~~~~i~~l~~-~~~----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l 294 (526)
T PF01602_consen 236 LL----NLLQSS------------SPSVVYEAIRLIIKLSP-SPE----LLQKAINPLIKLLSSSDPNVRYIALDSLSQL 294 (526)
T ss_dssp HH----HHHHHH------------HHHHHHHHHHHHHHHSS-SHH----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HH----HHhhcc------------ccHHHHHHHHHHHHhhc-chH----HHHhhHHHHHHHhhcccchhehhHHHHHHHh
Confidence 33 333211 12245777777764432 332 4456667777777655544555566666666
Q ss_pred hhc
Q 001585 682 TFF 684 (1049)
Q Consensus 682 ~~~ 684 (1049)
...
T Consensus 295 ~~~ 297 (526)
T PF01602_consen 295 AQS 297 (526)
T ss_dssp CCH
T ss_pred hcc
Confidence 543
No 33
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.69 E-value=0.35 Score=61.20 Aligned_cols=384 Identities=15% Similarity=0.175 Sum_probs=215.4
Q ss_pred HHHHHHHHHHHHhcc-cchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhc
Q 001585 404 TASMDFVSELVRKRG-KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVF 482 (1049)
Q Consensus 404 ~aA~~ll~~L~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~ 482 (1049)
..|......++.+++ ...+..++..|...+.+ .....|--|+.++..+.+.=...- ..+++ ...|.
T Consensus 795 ~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e--------~~ialRtkAlKclS~ive~Dp~vL-~~~dv----q~~Vh 861 (1692)
T KOG1020|consen 795 DDAKLIVFYLAHARSFSQSFDPYLKLILSVLGE--------NAIALRTKALKCLSMIVEADPSVL-SRPDV----QEAVH 861 (1692)
T ss_pred hhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcC--------chHHHHHHHHHHHHHHHhcChHhh-cCHHH----HHHHH
Confidence 344445555555542 22334444444444433 145677788888888776521100 01222 23566
Q ss_pred cccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHH
Q 001585 483 PEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLD 562 (1049)
Q Consensus 483 p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~ 562 (1049)
.-+.+++..+|-+|..++|+|.-. .++...++|..+...+.|+...||-.|..-++.+|... |-+..+..
T Consensus 862 ~R~~DssasVREAaldLvGrfvl~---~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~-------pdf~~i~~ 931 (1692)
T KOG1020|consen 862 GRLNDSSASVREAALDLVGRFVLS---IPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEET-------PDFSKIVD 931 (1692)
T ss_pred HhhccchhHHHHHHHHHHhhhhhc---cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC-------CChhhHHH
Confidence 678889999999999999999632 56788999999999999999999999999999999875 22233333
Q ss_pred HHHHHhhhhchhh-------------------------------------------------HHHHHHHHHHH-----cc
Q 001585 563 EFFKLMNEVENED-------------------------------------------------LVFTLETIVDK-----FG 588 (1049)
Q Consensus 563 ~L~~ll~~~~~~~-------------------------------------------------l~~~l~~iv~~-----~~ 588 (1049)
.+.+++..+..|+ +..++..++.. ..
T Consensus 932 ~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~ 1011 (1692)
T KOG1020|consen 932 MCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMK 1011 (1692)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhh
Confidence 3333333221110 11111222211 12
Q ss_pred CcccccHHHHHHHHHHHHHHHHhc----ccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHH-HHHhhHHHHHHHHc
Q 001585 589 EEMAPYALGLCQNLAAAFWRCMNT----AEADEDADDPGALAAVGCLRAISTILESVSRLPHLFV-QIEPTLLPIMRRML 663 (1049)
Q Consensus 589 ~~i~p~~~~l~~~L~~~~~~~~~~----~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~~~~~~~-~l~~~~~p~i~~~l 663 (1049)
..+.|.+...+.+....+..+..+ .+.+.+. +.-....++.+++++.......|..+. .....+.|++..-.
T Consensus 1012 ~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~---~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~ 1088 (1692)
T KOG1020|consen 1012 ESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMN---EEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKA 1088 (1692)
T ss_pred hhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhh---cccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccc
Confidence 334455544444444333333221 1111100 111123456777777666666776665 55566778776542
Q ss_pred -ccchhhHHHHHHHHHHHHhhcCCCCCHHHH-HHHHHHHHHHhhhHhhhHhhhHHhhhhHhhcCcccccccCCcchHHHH
Q 001585 664 -TTDGQEVFEEVLEIVSYMTFFSPTISLEMW-SLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSL 741 (1049)
Q Consensus 664 -~~~~~~~~~~~l~ll~~l~~~~~~isp~l~-~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i 741 (1049)
+.....|..++.+++..++-..+.++.... .+=..+++.+-..+.-.+.++++||.+.+.+-...+ .....+
T Consensus 1089 ~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~------~~v~~c 1162 (1692)
T KOG1020|consen 1089 STIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGA------KVVKAC 1162 (1692)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccch------HHHHHH
Confidence 234568999999999999866566665433 444555555544556677788899988777533322 456677
Q ss_pred HHHHHHHhcC-CC--CCCcccC------chhhHHHHHHHhccc--------CchhchHHHHHHHHH---HHHhhhhhHHH
Q 001585 742 WSMVSSIMAD-KN--LEDGDIE------PAPKLIEVVFQNCKG--------QVDHWVEPYLRITVE---RLRRAEKSYLK 801 (1049)
Q Consensus 742 ~~i~~~~l~~-~~--~~~~~~~------~a~~ll~~ii~~~~~--------~~~~~l~~il~~~l~---~l~~~~~~~~~ 801 (1049)
++.|.+.+.- +. .+..+.. ....+++.+.++..- ...+....+...++. ++...+...++
T Consensus 1163 f~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR 1242 (1692)
T KOG1020|consen 1163 FSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELR 1242 (1692)
T ss_pred HHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHH
Confidence 7777666642 11 1221111 223344555554321 111222334443333 33444457777
Q ss_pred HHHHHHHHHHHhhCHHHH
Q 001585 802 CLLVQVIADALYYNSSLT 819 (1049)
Q Consensus 802 ~~~l~v~~~~~~~~p~~~ 819 (1049)
...+.-+.+++..+|..+
T Consensus 1243 ~~al~~Lg~~ci~hp~l~ 1260 (1692)
T KOG1020|consen 1243 RKALINLGFICIQHPSLF 1260 (1692)
T ss_pred HHHHHHHHHHHhhCchhh
Confidence 777777777777777644
No 34
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.036 Score=62.66 Aligned_cols=386 Identities=15% Similarity=0.170 Sum_probs=200.3
Q ss_pred ccCCHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHH
Q 001585 398 DLYSPRTASMDFVSELVRKR-GKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERM 476 (1049)
Q Consensus 398 d~~s~R~aA~~ll~~L~~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~ 476 (1049)
-.|..|++|+--+..+++.+ .+.-...+-.++.+....|..+|.. +. +.|+|..+.+.+-++..... .-++.
T Consensus 12 KlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~--n~--rkGgLiGlAA~~iaLg~~~~--~Y~~~- 84 (675)
T KOG0212|consen 12 KLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHA--NM--RKGGLIGLAAVAIALGIKDA--GYLEK- 84 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCccc--cc--ccchHHHHHHHHHHhccccH--HHHHH-
Confidence 36778999998888888865 2333445555666666666555533 22 33999998888877753221 11222
Q ss_pred HHHhhccccCCCCcchhHHHHHHHHHhhccccCCh--hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccc
Q 001585 477 LVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIR 554 (1049)
Q Consensus 477 l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~--~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~ 554 (1049)
+..-|++-|+++...+|.-||.-+=..+.+. +.. .++..++..+.+...|++.-||- ++.-+.+++.+-...+.-.
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~-k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~~t 162 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVA-KGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESAST 162 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHh-ccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccccccc
Confidence 2233455567888899999998876555421 121 46788888888888898888886 5677777776542111112
Q ss_pred cchHHHHHHHHHHhhhhchhh---HHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHH
Q 001585 555 PILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCL 631 (1049)
Q Consensus 555 p~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l 631 (1049)
=.++.+++-|-.-+...+..+ +..=+..+-..-.=++..|.+.+...|. +..+ |+ ... .+.-+=
T Consensus 163 FsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf----~~Ls----D~----s~e-Vr~~~~ 229 (675)
T KOG0212|consen 163 FSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLF----NMLS----DS----SDE-VRTLTD 229 (675)
T ss_pred cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHH----HHhc----CC----cHH-HHHHHH
Confidence 233333333322222222221 2222222222222234445555555444 3332 21 111 122334
Q ss_pred HHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccchhhHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHhhhHhhh
Q 001585 632 RAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEALADWAIDF 710 (1049)
Q Consensus 632 e~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~-~~isp~l~~l~~~l~~~~~~~~~~~ 710 (1049)
.+++.++..+.+.|..+. .....+++..-++.....+-.-++--+.-+++-. +.+=+.+-.++..++.|+.+.....
T Consensus 230 t~l~~fL~eI~s~P~s~d--~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~ 307 (675)
T KOG0212|consen 230 TLLSEFLAEIRSSPSSMD--YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMS 307 (675)
T ss_pred HHHHHHHHHHhcCccccC--cccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCcccc
Confidence 457777777776675431 1222333333333233333344444444444332 2222333444555555543222111
Q ss_pred HhhhHHhhhhH-hhcCcccccccCCcchHHHHHHHHHHHhcCCCCCCcccCchhhHHHHHHHhcccCchhchHHHHHHHH
Q 001585 711 FPNILVPLDNY-ISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITV 789 (1049)
Q Consensus 711 l~~~~~~L~~~-i~~~~~~~l~~~~~~~~~~i~~i~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~l 789 (1049)
+..+-..+++- ...-...... +.-+ ...++++..+.+++.. +..+..+.+-+..+.++.|+++--+..+|+..++
T Consensus 308 i~~~a~~~n~~l~~l~s~~~~~-~~id-~~~ii~vl~~~l~~~~--~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL 383 (675)
T KOG0212|consen 308 IKEYAQMVNGLLLKLVSSERLK-EEID-YGSIIEVLTKYLSDDR--EETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLL 383 (675)
T ss_pred HHHHHHHHHHHHHHHHhhhhhc-cccc-hHHHHHHHHHHhhcch--HHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHH
Confidence 11111111110 1111111110 0002 2457788888887652 3335778888899999999998888888988888
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH
Q 001585 790 ERLRRAEKSYLKCLLVQVIADAL 812 (1049)
Q Consensus 790 ~~l~~~~~~~~~~~~l~v~~~~~ 812 (1049)
..|.+.. ..+....+.+++...
T Consensus 384 ~tLsd~s-d~vvl~~L~lla~i~ 405 (675)
T KOG0212|consen 384 KTLSDRS-DEVVLLALSLLASIC 405 (675)
T ss_pred HhhcCch-hHHHHHHHHHHHHHh
Confidence 8776533 333333455555543
No 35
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.69 E-value=0.53 Score=63.21 Aligned_cols=374 Identities=15% Similarity=0.154 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhH---HHHHH
Q 001585 402 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSEL---ERMLV 478 (1049)
Q Consensus 402 ~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~---~~~l~ 478 (1049)
.+..|...|..|+..........+ ..++.. ++.+.+..++.++|.+....... +..... ..- .
T Consensus 546 ~q~~Aa~AL~nLi~~~d~~~I~~L----v~LLls--------dd~~~~~~aL~vLgnIlsl~~~~-d~~~~g~~~~gg-L 611 (2102)
T PLN03200 546 GQEIAAKTLTKLVRTADAATISQL----TALLLG--------DLPESKVHVLDVLGHVLSVASLE-DLVREGSAANDA-L 611 (2102)
T ss_pred HHHHHHHHHHHHHhccchhHHHHH----HHHhcC--------CChhHHHHHHHHHHHHHhhcchh-HHHHHhhhcccc-H
Confidence 345566677777765544444333 234432 13466677888888875532211 000000 011 1
Q ss_pred HhhccccCCCCcchhHHHHHHHHHhhccccCCh--hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccc
Q 001585 479 QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPI 556 (1049)
Q Consensus 479 ~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~--~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~ 556 (1049)
..+...+.++++-.|..|+|+++.++....... -.....++-++.+|.+.+..++..||.||.++..... .....-+
T Consensus 612 ~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~-~~q~~~~ 690 (2102)
T PLN03200 612 RTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK-ENRKVSY 690 (2102)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC-HHHHHHH
Confidence 234445677889999999999999976321110 1234567888899998888899999999999997542 2221111
Q ss_pred h-HHHHHHHHHHhhhhchhhHHHHHHHHHHHccCc-ccccHHHHH-HHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHH
Q 001585 557 L-PQLLDEFFKLMNEVENEDLVFTLETIVDKFGEE-MAPYALGLC-QNLAAAFWRCMNTAEADEDADDPGALAAVGCLRA 633 (1049)
Q Consensus 557 l-~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~-i~p~~~~l~-~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~ 633 (1049)
+ ...+.-|+.+++..+.+....++..+..-+.+. .. .++. ...+..+.+++.+..+. .+ .....+
T Consensus 691 v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~---~ei~~~~~I~~Lv~lLr~G~~~-----~k----~~Aa~A 758 (2102)
T PLN03200 691 AAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVA---AEALAEDIILPLTRVLREGTLE-----GK----RNAARA 758 (2102)
T ss_pred HHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHH---HHHHhcCcHHHHHHHHHhCChH-----HH----HHHHHH
Confidence 2 235566777776655554444554443322211 00 0111 11123344445433211 12 233344
Q ss_pred HHHHHHhhcCChH--HHHHHHhhHHHHHHHHcccchhhHH--HHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHHhhhH
Q 001585 634 ISTILESVSRLPH--LFVQIEPTLLPIMRRMLTTDGQEVF--EEVLEIVSYMTFFS--PTISLEMWSLWPLMMEALADWA 707 (1049)
Q Consensus 634 i~~ll~~~~~~~~--~~~~l~~~~~p~i~~~l~~~~~~~~--~~~l~ll~~l~~~~--~~isp~l~~l~~~l~~~~~~~~ 707 (1049)
+..+.+.-..... -+.+-...+.| +..+|+..+.+-. -++++.+..+.+.. ...++..|..|--
T Consensus 759 L~~L~~~~~~~~~~~~~~~~~g~v~~-l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e--------- 828 (2102)
T PLN03200 759 LAQLLKHFPVDDVLKDSVQCRGTVLA-LVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAE--------- 828 (2102)
T ss_pred HHHHHhCCChhHHHHHHHHHhCcHHH-HHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHh---------
Confidence 4444443221100 11122334444 4455554443333 36899999888743 3455555655421
Q ss_pred hhhHhhhHHhhhhHhhcCcccccccCCcchHHHHHHHHHHHhcCCCCCCcccCchhhHHHHHHHhcccCchhchHHHHHH
Q 001585 708 IDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRI 787 (1049)
Q Consensus 708 ~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~ 787 (1049)
.+.-+.+|-.++.. ++|...+.-+.++.++-.+. ..++..++-.-+ .-+..
T Consensus 829 ---~p~~l~~l~~~l~~--------~~p~~~~kai~il~~~~~~~----------~~~~~~~~~~~~--------~~~~~ 879 (2102)
T PLN03200 829 ---VPSSLEPLVRCLAE--------GHPLVQDKAIEILSRLCRDQ----------PVVLGDLIANAS--------KCISS 879 (2102)
T ss_pred ---ccCchHHHHHHHHc--------CChHHHHHHHHHHHHHhccC----------hhHHHHHHhccc--------chHHH
Confidence 11112223222233 33444566667777665322 223333333322 23344
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHhhCHHHHHHHHHhhCccHHHHHHHHHHHH
Q 001585 788 TVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQ 841 (1049)
Q Consensus 788 ~l~~l~~~~~~~~~~~~l~v~~~~~~~~p~~~l~~L~~~~~~~~~~~~w~~~~~ 841 (1049)
+..|+-+..+..++..-..++..+.-.+-+..+..|+..|.+..++....+.+.
T Consensus 880 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 933 (2102)
T PLN03200 880 LADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLK 933 (2102)
T ss_pred HHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence 445555444444444333333444456778888888888887777777766655
No 36
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.027 Score=64.92 Aligned_cols=333 Identities=14% Similarity=0.144 Sum_probs=191.7
Q ss_pred CCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHH--HHH
Q 001585 400 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELE--RML 477 (1049)
Q Consensus 400 ~s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~--~~l 477 (1049)
-+.+.+...++..+.-.........+...+.+.++.. ....+.++-..+..+..+..- ..++ .|+
T Consensus 110 ~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~--------~~~~~~~aa~~~ag~v~g~~i-----~~~~~~~~l 176 (569)
T KOG1242|consen 110 KSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTST--------KIAERAGAAYGLAGLVNGLGI-----ESLKEFGFL 176 (569)
T ss_pred HHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccc--------cHHHHhhhhHHHHHHHcCcHH-----hhhhhhhHH
Confidence 3456666667777666554444444556666666532 233344444444433333211 0111 111
Q ss_pred HHhhccccCCCCcchhHH-HHHHHHHhhcc--ccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccc
Q 001585 478 VQHVFPEFSSPVGHLRAK-AAWVAGQYAHI--NFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIR 554 (1049)
Q Consensus 478 ~~~v~p~l~~~~~~lr~r-a~~~l~~~~~~--~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~ 554 (1049)
..+.-...+..+.+++. +....-.+... .... .+...++|.++.+..|....||..|..|.+.+.+.- ....++
T Consensus 177 -~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~E-Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~-~~~aVK 253 (569)
T KOG1242|consen 177 -DNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFE-PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCL-SAYAVK 253 (569)
T ss_pred -HHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCC-chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhc-Ccchhh
Confidence 12222234444455553 22222222211 1112 478999999999999999999999999999888775 355666
Q ss_pred cchHHHHHHHHHHhhhhchhhHHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHH
Q 001585 555 PILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAI 634 (1049)
Q Consensus 555 p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i 634 (1049)
-++++++..+..- .--+......++..+.......+.-+.++++..|.+.+|.. ++..+..-.+||
T Consensus 254 ~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT-------------~~evr~a~~~~l 319 (569)
T KOG1242|consen 254 LLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDT-------------KPEVRKAGIETL 319 (569)
T ss_pred HhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccC-------------CHHHHHHHHHHH
Confidence 7777777777665 22333456677777777777777777778887777665431 333444556666
Q ss_pred HHHHHhhcCChHHHHHHHhhHHHHHHHHcccchhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhHhhhHhhh
Q 001585 635 STILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNI 714 (1049)
Q Consensus 635 ~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~isp~l~~l~~~l~~~~~~~~~~~l~~~ 714 (1049)
..+...+. +|+ -+.++|.+-.++. +.....+++++.+....+..---.|.+--+.|.+...+...+++.-...
T Consensus 320 ~~~~svid-N~d-----I~~~ip~Lld~l~-dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t 392 (569)
T KOG1242|consen 320 LKFGSVID-NPD-----IQKIIPTLLDALA-DPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKT 392 (569)
T ss_pred HHHHHhhc-cHH-----HHHHHHHHHHHhc-CcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhH
Confidence 66655553 554 2456788888885 3444556666666665554332345666667777666655444444555
Q ss_pred HHhhhhHhhcC--cccccccCCcchHHHHHHHHHHHhcCCCCCCcccCchhhHHHHHHHhcccC
Q 001585 715 LVPLDNYISRG--TAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ 776 (1049)
Q Consensus 715 ~~~L~~~i~~~--~~~~l~~~~~~~~~~i~~i~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~ 776 (1049)
..+++|....- +..+. .|+..++.-+++.+.+. ..+.+..+.+-+..+++..+..
T Consensus 393 ~~IidNm~~LveDp~~la-----pfl~~Llp~lk~~~~d~--~PEvR~vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 393 AIIIDNMCKLVEDPKDLA-----PFLPSLLPGLKENLDDA--VPEVRAVAARALGALLERLGEV 449 (569)
T ss_pred HHHHHHHHHhhcCHHHHh-----hhHHHHhhHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHhh
Confidence 56666654433 33332 57777777667666543 2222455677777777776654
No 37
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.41 Score=58.72 Aligned_cols=348 Identities=16% Similarity=0.155 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhhh---h-----hHHHHHHHHHHHHHhcc
Q 001585 84 VDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQD---Q-----QVYGALFVLRILSRKYE 155 (1049)
Q Consensus 84 ~~k~~ir~~ll~~L~~~~~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s---~-----~~~~~L~~L~~i~k~~~ 155 (1049)
+--+.+-+.|++++.+.+..||-..|..+.+|+.+. | ++|.++++...-+ + .+|||+++|.++.++=
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rl-p---~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG- 411 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRL-P---PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG- 411 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccC-c---HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-
Confidence 455688889999999999999999999999999986 4 4565555544322 2 6899999999988642
Q ss_pred cCCCCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHhhhccCCcccCCh
Q 001585 156 YQPTDSTSMKGYRIYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDP 235 (1049)
Q Consensus 156 ~~~t~~~~~~~~r~~~~~~~~~~~~l~~i~~~~~p~Ll~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~lp~~~~~~ 235 (1049)
+ .+...+..+.|.++.-+.--...+..+ ....+|-.++=+.+++..-.-|
T Consensus 412 ----------------l-------Llps~l~dVvplI~kaL~Yd~~~G~~s-~G~~VRDaAcY~~WAf~Rays~------ 461 (1133)
T KOG1943|consen 412 ----------------L-------LLPSLLEDVVPLILKALHYDVRRGQHS-VGQHVRDAACYVCWAFARAYSP------ 461 (1133)
T ss_pred ----------------C-------cchHHHHHHHHHHHHHhhhhhhhcccc-cccchHHHHHHHHHHHHhcCCh------
Confidence 1 112334444554442111000001000 0123444444444444321112
Q ss_pred hhHHHHHH-HHHHHhcCCCCCCCCCCChhhhhhcchHHHHHHHHHHHHHHHHHhCCC-CCCChhhHHHHHHHHHhhHHHH
Q 001585 236 NVFNAWMI-LFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDL-KLQNPENRAFAQMFQKNYAGKI 313 (1049)
Q Consensus 236 ~~l~~~~~-~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~-~~~~~~~~~f~~~f~~~~~~~~ 313 (1049)
..+.++.+ ++..++..-+ . |.+ ..||..+...+...+.|+|+. +-. .+
T Consensus 462 ~~l~p~l~~L~s~LL~~Al----F--Dre-------vncRRAAsAAlqE~VGR~~n~p~Gi-----------------~L 511 (1133)
T KOG1943|consen 462 SDLKPVLQSLASALLIVAL----F--DRE-------VNCRRAASAALQENVGRQGNFPHGI-----------------SL 511 (1133)
T ss_pred hhhhHHHHHHHHHHHHHHh----c--Cch-------hhHhHHHHHHHHHHhccCCCCCCch-----------------hh
Confidence 33444444 2222222210 0 111 468888989998888887762 100 00
Q ss_pred HHHHHHHHHHhhCCcccCHHHHHHHHHHHHhhcCCchhhhhchhhHHHHHHHHhhhccccChhhHhhhhcCHHHHHhHhc
Q 001585 314 LECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGY 393 (1049)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~ 393 (1049)
+.. ..|.+=..+..+..=+.. .-+.+..+...++.+++...++ -|+
T Consensus 512 -------is~---~dy~sV~~rsNcy~~l~~------~ia~~~~y~~~~f~~L~t~Kv~-------HWd----------- 557 (1133)
T KOG1943|consen 512 -------IST---IDYFSVTNRSNCYLDLCV------SIAEFSGYREPVFNHLLTKKVC-------HWD----------- 557 (1133)
T ss_pred -------hhh---cchhhhhhhhhHHHHHhH------HHHhhhhHHHHHHHHHHhcccc-------ccc-----------
Confidence 000 001000011111111100 0112222333344444433322 231
Q ss_pred CcccccCCHHHHHHHHHHHHHHhcccchHHHH-HHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchh-
Q 001585 394 DIIEDLYSPRTASMDFVSELVRKRGKENLQKF-IQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKS- 471 (1049)
Q Consensus 394 d~~~d~~s~R~aA~~ll~~L~~~~~~~~~~~~-~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~- 471 (1049)
-..|--|+-.|..|....++...... .+++...+. .+...+.++..+.|.+...+....+...
T Consensus 558 ------~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls---------~~~~~r~g~~la~~ev~~~~~~l~~~~~~ 622 (1133)
T KOG1943|consen 558 ------VKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLS---------KDASMRHGVFLAAGEVIGALRKLEPVIKG 622 (1133)
T ss_pred ------HHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcC---------CChHHhhhhHHHHHHHHHHhhhhhhhhhh
Confidence 12344445556667776665433221 222222222 2667899999999999888765442111
Q ss_pred ---hHHHHHHHhhccccCC---CC---cchhHHHHHHHHHhhccccC-ChhHHHH-HHHHHHhcCCCCCCchHHHHHHHH
Q 001585 472 ---ELERMLVQHVFPEFSS---PV---GHLRAKAAWVAGQYAHINFS-DQNNFRK-ALHSVVSGLRDPELPVRVDSVFAL 540 (1049)
Q Consensus 472 ---~~~~~l~~~v~p~l~~---~~---~~lr~ra~~~l~~~~~~~f~-~~~~~~~-~~~~ll~~L~d~~~~V~~~Aa~AL 540 (1049)
+-...+. +++|.+.+ .. -++|...|.++-+++..+.+ .++.... .-..+.+++.+++ .+|..|..|+
T Consensus 623 l~e~~i~~l~-~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av 700 (1133)
T KOG1943|consen 623 LDENRIAGLL-SIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAV 700 (1133)
T ss_pred hHHHHhhhhh-hhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHH
Confidence 1111121 23444332 12 38888999999888653311 0123333 3334455555666 8899999999
Q ss_pred HHHHHhc
Q 001585 541 RSFVEAC 547 (1049)
Q Consensus 541 ~~~~~~~ 547 (1049)
..++...
T Consensus 701 ~~l~s~y 707 (1133)
T KOG1943|consen 701 SDLVSTY 707 (1133)
T ss_pred HHHHHHH
Confidence 9998764
No 38
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.49 E-value=0.043 Score=65.23 Aligned_cols=188 Identities=17% Similarity=0.219 Sum_probs=111.0
Q ss_pred HHhhccccCCCCcchhHHHHHHHHHhhccccCChhH--HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccc-ccccc
Q 001585 478 VQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN--FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRD-LNEIR 554 (1049)
Q Consensus 478 ~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~--~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~-~~~l~ 554 (1049)
...+...|.+++|.+|.-+|+.+++.....-...+. -..+++.++.+|.+++..|...|+.+|..++..... ...+.
T Consensus 79 ~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~ 158 (503)
T PF10508_consen 79 QPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFD 158 (503)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhC
Confidence 345555678899999999999999986532000011 256799999999999999999999999999986531 11222
Q ss_pred cchHHHHHHHHHHhhhhchhhHHHHHHHHHHHccCcccccHHHHHHH--HHHHHHHHHhcccCCCCCCChhHHHHHHHHH
Q 001585 555 PILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQN--LAAAFWRCMNTAEADEDADDPGALAAVGCLR 632 (1049)
Q Consensus 555 p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~--L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le 632 (1049)
+.+ +..|-.++...+...-..+++.++...+.. |.+...+.. +.+.+.+...+ +..+....+++
T Consensus 159 ~~~---~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S--~~~~~~~~~sgll~~ll~eL~~---------dDiLvqlnale 224 (503)
T PF10508_consen 159 SNL---LSKLKSLMSQSSDIVRCRVYELLVEIASHS--PEAAEAVVNSGLLDLLLKELDS---------DDILVQLNALE 224 (503)
T ss_pred cch---HHHHHHHHhccCHHHHHHHHHHHHHHHhcC--HHHHHHHHhccHHHHHHHHhcC---------ccHHHHHHHHH
Confidence 322 566666665533334456777666654321 222222221 33333333321 23566678888
Q ss_pred HHHHHHHhhcCChHHHHHHH-hhHHHHHHHHcccchh-----h-HHHHHHHHHHHHhh
Q 001585 633 AISTILESVSRLPHLFVQIE-PTLLPIMRRMLTTDGQ-----E-VFEEVLEIVSYMTF 683 (1049)
Q Consensus 633 ~i~~ll~~~~~~~~~~~~l~-~~~~p~i~~~l~~~~~-----~-~~~~~l~ll~~l~~ 683 (1049)
+++.+... +....-+. .-+++.|...+.+... . +++..+...+.+..
T Consensus 225 ll~~La~~----~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~ 278 (503)
T PF10508_consen 225 LLSELAET----PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR 278 (503)
T ss_pred HHHHHHcC----hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh
Confidence 88888763 22233333 3466666666653222 2 34555566666654
No 39
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.4 Score=55.52 Aligned_cols=142 Identities=17% Similarity=0.232 Sum_probs=111.8
Q ss_pred hHHHHHHHHHh-cCCCHHHHHHHHHHHHHhccCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCcCCCC
Q 001585 3 LPSLALILQGA-LSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (1049)
Q Consensus 3 ~~~l~~~L~~t-ls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iRq~Aai~lKn~i~~~W~~~~~~~~~~i 81 (1049)
+.+|..+-... -|.|+..|.+||..|.++...|+++.-+.-++.+.+. +-...+|+..|-+.|.++= ++
T Consensus 4 LaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~-pYs~mlAst~L~Klvs~~t---------~l 73 (1082)
T KOG1410|consen 4 LAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSY-PYSQMLASTCLMKLVSRKT---------PL 73 (1082)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHcCCC---------CC
Confidence 45555555553 4679999999999999999999999999888887664 4556678888888887654 38
Q ss_pred ChHHHHHHHHHHHHHhhcC----ChHHHHHHHHHHHHHHHhhCCC------CchhHHHHHHHHhhhh---hHHHHHHHHH
Q 001585 82 SQVDKDMVRDHILVFVAQV----PPLLRVQLGECLKTIIHADYPE------QWPHLLDWVKHNLQDQ---QVYGALFVLR 148 (1049)
Q Consensus 82 ~~~~k~~ir~~ll~~L~~~----~~~ir~~l~~~i~~Ia~~d~P~------~Wp~Ll~~l~~~l~s~---~~~~~L~~L~ 148 (1049)
|-+.|--||.-+++.|... .+-+-..++..+++|-+..|-+ .+-+.+.++...++.+ .-.-|+.+|.
T Consensus 74 pl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLs 153 (1082)
T KOG1410|consen 74 PLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILS 153 (1082)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHH
Confidence 9999999999999999762 3457788899999999887652 2458888998888876 2356788999
Q ss_pred HHHHhc
Q 001585 149 ILSRKY 154 (1049)
Q Consensus 149 ~i~k~~ 154 (1049)
+++.+.
T Consensus 154 qLvqem 159 (1082)
T KOG1410|consen 154 QLVQEM 159 (1082)
T ss_pred HHHHHh
Confidence 999887
No 40
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.19 Score=59.21 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=78.9
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhc
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 524 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~ 524 (1049)
|...|-.||+++.++-- +.+.+++.-.|-....++.|++|..|...|-+..+. +++...++...+-.+
T Consensus 121 N~LiRasALRvlSsIRv---------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL---d~e~k~qL~e~I~~L 188 (968)
T KOG1060|consen 121 NQLIRASALRVLSSIRV---------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL---DPEQKDQLEEVIKKL 188 (968)
T ss_pred cHHHHHHHHHHHHhcch---------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC---ChhhHHHHHHHHHHH
Confidence 67888899988876531 234454444555556789999999999999987654 344456888888888
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhc
Q 001585 525 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVE 572 (1049)
Q Consensus 525 L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~ 572 (1049)
|.|.++.|--+|+.|+..+|.+. -+.|-++. .+|++++.+++
T Consensus 189 LaD~splVvgsAv~AF~evCPer--ldLIHkny----rklC~ll~dvd 230 (968)
T KOG1060|consen 189 LADRSPLVVGSAVMAFEEVCPER--LDLIHKNY----RKLCRLLPDVD 230 (968)
T ss_pred hcCCCCcchhHHHHHHHHhchhH--HHHhhHHH----HHHHhhccchh
Confidence 99999999999999999999774 34444443 34555555543
No 41
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.33 E-value=0.00087 Score=59.54 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=64.8
Q ss_pred hHHHHHHHHHhhccccC-ChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhh
Q 001585 493 RAKAAWVAGQYAHINFS-DQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV 571 (1049)
Q Consensus 493 r~ra~~~l~~~~~~~f~-~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~ 571 (1049)
|..+++.++..+...-. -.+++..+++.++.++.|++..||.+||.||-+++... ++.+.||...|...|++++.+.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~--~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVA--RGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCC
Confidence 45566677666532211 22689999999999999999999999999999999884 7888899999999999999876
Q ss_pred chh
Q 001585 572 ENE 574 (1049)
Q Consensus 572 ~~~ 574 (1049)
+..
T Consensus 81 d~~ 83 (97)
T PF12755_consen 81 DEN 83 (97)
T ss_pred chh
Confidence 543
No 42
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.30 E-value=0.1 Score=62.11 Aligned_cols=329 Identities=13% Similarity=0.127 Sum_probs=168.4
Q ss_pred hccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccccccc-chHH
Q 001585 481 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRP-ILPQ 559 (1049)
Q Consensus 481 v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p-~l~~ 559 (1049)
++..|++..+=.-.-+|.++.++-+- ........++.+.+...|.+++..||..|+.+|.++.++.. ....- .=..
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~-~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~--~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSA-LSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSE--GAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCH--HHHHHhcCcc
Confidence 33344433332234577778776542 22234578888999999999999999999999999987642 11110 1134
Q ss_pred HHHHHHHHhhhhchhhHHHHHHHHHHHccCcccccHHHHH-HHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHH
Q 001585 560 LLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLC-QNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTIL 638 (1049)
Q Consensus 560 il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~-~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll 638 (1049)
++..++.++...+.+....++..+..-.+.. +....+. ..+...+.++..+. +...+..+++++..+.
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~~~~~~~L~~l~~~~---------~~~vR~Rv~el~v~i~ 188 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFDSNLLSKLKSLMSQS---------SDIVRCRVYELLVEIA 188 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhCcchHHHHHHHHhcc---------CHHHHHHHHHHHHHHH
Confidence 6667777777655443333333332222211 1222221 11122333333321 1233445666655553
Q ss_pred HhhcCChHHHHHHH-hhHHHHHHHHcccchhhHHHHHHHHHHHHhhcCCCCCHHHH--HHHHHHHHHHhhhHh------h
Q 001585 639 ESVSRLPHLFVQIE-PTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMW--SLWPLMMEALADWAI------D 709 (1049)
Q Consensus 639 ~~~~~~~~~~~~l~-~~~~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~isp~l~--~l~~~l~~~~~~~~~------~ 709 (1049)
+.+++...... .-+++.+-..+.+++.-+--.+++++..+.. .+.-...+. .+++.+.+.+.+... -
T Consensus 189 ---~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~ 264 (503)
T PF10508_consen 189 ---SHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSL 264 (503)
T ss_pred ---hcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccch
Confidence 33555544433 2366766677766555566799999999987 322222332 467777777643322 2
Q ss_pred hHhhhHHhhhhHhhcCcccccccCCcchHHHHHHHHHHHhcCCCCCCcccCchhhHHHHHHHhcccC--chhchHHHHHH
Q 001585 710 FFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ--VDHWVEPYLRI 787 (1049)
Q Consensus 710 ~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~--~~~~l~~il~~ 787 (1049)
+++..+....+....++..+.. ....+++.+..++.+. +......|++-+..+-....|. +...-++-+..
T Consensus 265 ~l~g~~~f~g~la~~~~~~v~~-----~~p~~~~~l~~~~~s~--d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~ 337 (503)
T PF10508_consen 265 LLPGRMKFFGNLARVSPQEVLE-----LYPAFLERLFSMLESQ--DPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKH 337 (503)
T ss_pred hhhhHHHHHHHHHhcChHHHHH-----HHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHH
Confidence 5566666666655556665542 1122222222333332 2222345666666554433332 10111223333
Q ss_pred HHHHHHh---hhhhHHHHHHHHHHHHHHhhCHH-HHHHHHHhhCccHHHHHHHHHHHH
Q 001585 788 TVERLRR---AEKSYLKCLLVQVIADALYYNSS-LTLSILHKLGVATEVFNLWFQMLQ 841 (1049)
Q Consensus 788 ~l~~l~~---~~~~~~~~~~l~v~~~~~~~~p~-~~l~~L~~~~~~~~~~~~w~~~~~ 841 (1049)
++..+.. .....++...+..+++.+...+. ..-++ ..+...|++.+.
T Consensus 338 ~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i-------~~~~~~w~~~~~ 388 (503)
T PF10508_consen 338 VLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDI-------LSITESWYESLS 388 (503)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHH-------HHHHHHHHHHhc
Confidence 3333332 12446777777777777544332 11111 134567777655
No 43
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.26 Score=57.71 Aligned_cols=139 Identities=19% Similarity=0.251 Sum_probs=97.1
Q ss_pred HHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccc
Q 001585 477 LVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPI 556 (1049)
Q Consensus 477 l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~ 556 (1049)
+..-|+..+++.-||+|-+|..++=+..- +=|+.+...+|-+..-|.|+++.|+.+|+..++.+.+.. +....|.
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFL---kYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKn--PknyL~L 219 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFL---KYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKN--PQNYLQL 219 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHH---hhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhC--Ccccccc
Confidence 34456667888999999999988855321 234678999999999999999999999999999888763 4555555
Q ss_pred hHHHHHHHHHHhhhhchh-hHHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHH
Q 001585 557 LPQLLDEFFKLMNEVENE-DLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAIS 635 (1049)
Q Consensus 557 l~~il~~L~~ll~~~~~~-~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~ 635 (1049)
.|. ++++|-...+. -+..+|.-+. .++|+=+.+-..|.+.+.+++. ++.+..-+.||+.
T Consensus 220 AP~----ffkllttSsNNWmLIKiiKLF~-----aLtplEPRLgKKLieplt~li~-----------sT~AmSLlYECvN 279 (877)
T KOG1059|consen 220 APL----FYKLLVTSSNNWVLIKLLKLFA-----ALTPLEPRLGKKLIEPITELME-----------STVAMSLLYECVN 279 (877)
T ss_pred cHH----HHHHHhccCCCeehHHHHHHHh-----hccccCchhhhhhhhHHHHHHH-----------hhHHHHHHHHHHH
Confidence 554 45566544433 3555554332 3567777777777777777664 2333445688888
Q ss_pred HHHHh
Q 001585 636 TILES 640 (1049)
Q Consensus 636 ~ll~~ 640 (1049)
+++..
T Consensus 280 TVVa~ 284 (877)
T KOG1059|consen 280 TVVAV 284 (877)
T ss_pred Hheee
Confidence 88776
No 44
>PTZ00429 beta-adaptin; Provisional
Probab=97.26 E-value=0.2 Score=61.67 Aligned_cols=126 Identities=14% Similarity=0.106 Sum_probs=84.0
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHH--HHHHHHHH
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNF--RKALHSVV 522 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~--~~~~~~ll 522 (1049)
|...|--||+.++++.. ..+.+.+...|...+.+++|++|..|+.++.+.... +++.. ..+++.+.
T Consensus 118 Np~IRaLALRtLs~Ir~---------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~---~pelv~~~~~~~~L~ 185 (746)
T PTZ00429 118 SPVVRALAVRTMMCIRV---------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD---DMQLFYQQDFKKDLV 185 (746)
T ss_pred CHHHHHHHHHHHHcCCc---------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh---CcccccccchHHHHH
Confidence 67888888888876532 234444555666677899999999999999997542 22221 24566677
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHH
Q 001585 523 SGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVD 585 (1049)
Q Consensus 523 ~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~ 585 (1049)
.+|.|+++.|...|..+|..+.+.. +..+. .....+.+|+..+++.+.=.-..+|+.+..
T Consensus 186 ~LL~D~dp~Vv~nAl~aL~eI~~~~--~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~ 245 (746)
T PTZ00429 186 ELLNDNNPVVASNAAAIVCEVNDYG--SEKIE-SSNEWVNRLVYHLPECNEWGQLYILELLAA 245 (746)
T ss_pred HHhcCCCccHHHHHHHHHHHHHHhC--chhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Confidence 7788999999999999999998764 22232 334555666666665543334455555543
No 45
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.042 Score=63.03 Aligned_cols=300 Identities=13% Similarity=0.156 Sum_probs=158.6
Q ss_pred HHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHHhcc--cccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHHccCc
Q 001585 514 FRKALHSVVSGLR-DPELPVRVDSVFALRSFVEACR--DLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEE 590 (1049)
Q Consensus 514 ~~~~~~~ll~~L~-d~~~~V~~~Aa~AL~~~~~~~~--~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~ 590 (1049)
...+++.++.+|. +.++.++..||+||.++..... .+-.+..-.-++ +..++...+.+-...+.-++-...++.
T Consensus 107 ~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~---fi~Ll~s~~~~v~eQavWALgNIagds 183 (514)
T KOG0166|consen 107 QSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPI---FIQLLSSPSADVREQAVWALGNIAGDS 183 (514)
T ss_pred HcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHH---HHHHhcCCcHHHHHHHHHHHhccccCC
Confidence 3467888899996 5567799999999999998653 222222222233 555565544333333433333333333
Q ss_pred ccccHHHHH--HHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccchh
Q 001585 591 MAPYALGLC--QNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQ 668 (1049)
Q Consensus 591 i~p~~~~l~--~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~ 668 (1049)
|-.-+.+ ...+..+++...... +..+...+.=+++.+.+.-...| -..-...++|++...+...+.
T Consensus 184 --~~~Rd~vl~~g~l~pLl~~l~~~~--------~~~~lRn~tW~LsNlcrgk~P~P--~~~~v~~iLp~L~~ll~~~D~ 251 (514)
T KOG0166|consen 184 --PDCRDYVLSCGALDPLLRLLNKSD--------KLSMLRNATWTLSNLCRGKNPSP--PFDVVAPILPALLRLLHSTDE 251 (514)
T ss_pred --hHHHHHHHhhcchHHHHHHhcccc--------chHHHHHHHHHHHHHHcCCCCCC--cHHHHHHHHHHHHHHHhcCCH
Confidence 2222222 122233444443211 21122234455555555533233 223345779999999988888
Q ss_pred hHHHHHHHHHHHHhhcCCCCCHHHH--HHHHHHHHHHhhhHhhhHhhhHHhhhhHhhcCcccccccCCcchHHHHHHHHH
Q 001585 669 EVFEEVLEIVSYMTFFSPTISLEMW--SLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVS 746 (1049)
Q Consensus 669 ~~~~~~l~ll~~l~~~~~~isp~l~--~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~ 746 (1049)
+...+++-.++.++.+++.....+. .+.|.+..++...........++.+.| |..|.+...+. =.-...+..+.
T Consensus 252 ~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN-IvtG~d~QTq~---vi~~~~L~~l~ 327 (514)
T KOG0166|consen 252 EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN-IVTGSDEQTQV---VINSGALPVLS 327 (514)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc-eeeccHHHHHH---HHhcChHHHHH
Confidence 9999999899988876643332222 456777777653322233344566666 44444432210 00112344556
Q ss_pred HHhcCCCCCCcccCchhhHHHHHHHhcccCchhchH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhCHHHHHHHHHh
Q 001585 747 SIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVE-PYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHK 825 (1049)
Q Consensus 747 ~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~-~il~~~l~~l~~~~~~~~~~~~l~v~~~~~~~~p~~~l~~L~~ 825 (1049)
.++... ..+.=+-.||..+..|.-..+.++..++. .++..++..|+..+. ..+.-..-.|.++..-+...-+.+|-+
T Consensus 328 ~ll~~s-~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef-~~rKEAawaIsN~ts~g~~~qi~yLv~ 405 (514)
T KOG0166|consen 328 NLLSSS-PKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEF-DIRKEAAWAISNLTSSGTPEQIKYLVE 405 (514)
T ss_pred HHhccC-cchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccch-HHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 666421 12211235888888776644444443333 566666666665442 223333445555554444555556666
Q ss_pred hCccHHHHH
Q 001585 826 LGVATEVFN 834 (1049)
Q Consensus 826 ~~~~~~~~~ 834 (1049)
.|+...|..
T Consensus 406 ~giI~plcd 414 (514)
T KOG0166|consen 406 QGIIKPLCD 414 (514)
T ss_pred cCCchhhhh
Confidence 565554443
No 46
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.66 Score=53.00 Aligned_cols=71 Identities=15% Similarity=0.239 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchh--hHHHHHHHHH
Q 001585 512 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE--DLVFTLETIV 584 (1049)
Q Consensus 512 ~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~--~l~~~l~~iv 584 (1049)
.+...+++-++.|+.|++..||.+||.++-++.... +..+.+|.+.|...+.++....+.. .-...+..++
T Consensus 80 ~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~--k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLi 152 (675)
T KOG0212|consen 80 GYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVA--KGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLI 152 (675)
T ss_pred HHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHh--ccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHH
Confidence 588999999999999999999999999999999885 7889999999999999999765543 2334444444
No 47
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.18 E-value=0.98 Score=54.52 Aligned_cols=287 Identities=9% Similarity=0.074 Sum_probs=157.4
Q ss_pred chhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCC-CCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhh
Q 001585 491 HLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDP-ELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMN 569 (1049)
Q Consensus 491 ~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~-~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~ 569 (1049)
.++....|.......- -...+.+...+..+.+.+..+ .+..-..|..++..|... .....+.+..++...++.+.
T Consensus 425 k~qea~l~a~~~~~~~-~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~---~~~~~~~~~~fl~~~v~~l~ 500 (1005)
T KOG2274|consen 425 KIQEALLVAAESVRID-DANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSS---TVINPQLLQHFLNATVNALT 500 (1005)
T ss_pred HHHHHHHHHHhhcccC-cchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhh---hccchhHHHHHHHHHHHhhc
Confidence 4455555555444321 011245666677777777654 344555777777766654 22334455555555555554
Q ss_pred hhchhh-HHHHHHHHHHHccCc-ccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHH
Q 001585 570 EVENED-LVFTLETIVDKFGEE-MAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHL 647 (1049)
Q Consensus 570 ~~~~~~-l~~~l~~iv~~~~~~-i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~~~~~ 647 (1049)
.-+... -+.++.++...++-+ +.|+-+.+...| +++....+ +. ...-++|+++.++.. +|+.
T Consensus 501 ~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L----~qlas~~s-------~e--vl~llmE~Ls~vv~~---dpef 564 (1005)
T KOG2274|consen 501 MDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGL----LQLASKSS-------DE--VLVLLMEALSSVVKL---DPEF 564 (1005)
T ss_pred cCCCCchhHHHHHHHHhccCceeccccchHHHHHH----HHHccccc-------HH--HHHHHHHHHHHHhcc---Chhh
Confidence 322222 234444444444433 223444444333 33333222 11 233567888776654 6777
Q ss_pred HHHHHhhHHHHHHHHcccc--hhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhhH----hhhHhhhHHhhhhH
Q 001585 648 FVQIEPTLLPIMRRMLTTD--GQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWA----IDFFPNILVPLDNY 721 (1049)
Q Consensus 648 ~~~l~~~~~p~i~~~l~~~--~~~~~~~~l~ll~~l~~~~~~isp~l~~l~~~l~~~~~~~~----~~~l~~~~~~L~~~ 721 (1049)
....+..+.|.+..++... .....+.+.+++..++.......|....+.|.+++.++..+ .+-..-.+.+|..+
T Consensus 565 ~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttv 644 (1005)
T KOG2274|consen 565 AASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTV 644 (1005)
T ss_pred hhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHH
Confidence 7888999999888877542 23455667777777776555566667778899999886433 23333456788889
Q ss_pred hhcCcccccccCCcchHHHHHHHHHHHhcCCCCCCcc-cCchhhHHHHHHHhcccCc-----hhc--hHHHHHHHHHHHH
Q 001585 722 ISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGD-IEPAPKLIEVVFQNCKGQV-----DHW--VEPYLRITVERLR 793 (1049)
Q Consensus 722 i~~~~~~~l~~~~~~~~~~i~~i~~~~l~~~~~~~~~-~~~a~~ll~~ii~~~~~~~-----~~~--l~~il~~~l~~l~ 793 (1049)
++++|..+-+ ..+...|.-+.++.-. .++.+ -..|++++..++....+++ .|- +-.|++.+- +|-
T Consensus 645 vr~tp~pL~~----~l~~~~FpaVak~tlH--sdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~s-qLL 717 (1005)
T KOG2274|consen 645 LRNTPSPLPN----LLICYAFPAVAKITLH--SDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLS-QLL 717 (1005)
T ss_pred HhcCCCCccH----HHHHHHhHHhHhheee--cCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHH-HHc
Confidence 9999877543 3556666655555321 12332 3467777777776633322 222 224555443 555
Q ss_pred hhhhhHHHHHH
Q 001585 794 RAEKSYLKCLL 804 (1049)
Q Consensus 794 ~~~~~~~~~~~ 804 (1049)
+.+++......
T Consensus 718 dp~~sds~a~~ 728 (1005)
T KOG2274|consen 718 DPETSDSAAAF 728 (1005)
T ss_pred CCccchhHHHH
Confidence 54444444433
No 48
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=1.7 Score=55.49 Aligned_cols=228 Identities=16% Similarity=0.222 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHhhCCcccCHHHHHHHHHHHHhhcCCchhhhhchhhHHHHHHHHhhhccccChhhHhhhhcCHHHHHh
Q 001585 311 GKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVR 390 (1049)
Q Consensus 311 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~ 390 (1049)
|+++-.++++... +..|.|.+=+...+.-+.. .....++|++.+|++.+. .| .-||.-
T Consensus 955 PdLVYKFM~LAnh--~A~wnSk~GaAfGf~~i~~-----~a~~kl~p~l~kLIPrLy-RY-----------~yDP~~--- 1012 (1702)
T KOG0915|consen 955 PDLVYKFMQLANH--NATWNSKKGAAFGFGAIAK-----QAGEKLEPYLKKLIPRLY-RY-----------QYDPDK--- 1012 (1702)
T ss_pred hHHHHHHHHHhhh--hchhhcccchhhchHHHHH-----HHHHhhhhHHHHhhHHHh-hh-----------ccCCcH---
Confidence 4444444444332 2336665555444443322 124567899999887653 22 223432
Q ss_pred HhcCcccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCch
Q 001585 391 KGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYK 470 (1049)
Q Consensus 391 ~~~d~~~d~~s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~ 470 (1049)
.++.|..+.=.+|....++ ++.. |.++++....-+-+ ...||.|||+..|+.-+-.+- +...+.
T Consensus 1013 ----------~Vq~aM~sIW~~Li~D~k~-~vd~---y~neIl~eLL~~lt-~kewRVReasclAL~dLl~g~-~~~~~~ 1076 (1702)
T KOG0915|consen 1013 ----------KVQDAMTSIWNALITDSKK-VVDE---YLNEILDELLVNLT-SKEWRVREASCLALADLLQGR-PFDQVK 1076 (1702)
T ss_pred ----------HHHHHHHHHHHHhccChHH-HHHH---HHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHcCC-ChHHHH
Confidence 2344444444555544322 2221 22222222111111 237999999999987655431 111112
Q ss_pred hhHHHHHHH--hhccccCCCCcchhHHHHHHHHHhhc--cccCCh----hHHHHHHHHHHhc-CCCCCCchHHHHHHHHH
Q 001585 471 SELERMLVQ--HVFPEFSSPVGHLRAKAAWVAGQYAH--INFSDQ----NNFRKALHSVVSG-LRDPELPVRVDSVFALR 541 (1049)
Q Consensus 471 ~~~~~~l~~--~v~p~l~~~~~~lr~ra~~~l~~~~~--~~f~~~----~~~~~~~~~ll~~-L~d~~~~V~~~Aa~AL~ 541 (1049)
..+..+... .+.-+....-.-.--++|.++|+.+- +...+. +.+..++|.++.- +.+.-.-||..+..++-
T Consensus 1077 e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~ 1156 (1702)
T KOG0915|consen 1077 EKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLM 1156 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHH
Confidence 222222211 11111111112223345666776532 111122 3444455544421 22333458888888888
Q ss_pred HHHHhcccccccccchHHHHHHHHHHhhhhchhhHHH
Q 001585 542 SFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVF 578 (1049)
Q Consensus 542 ~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~ 578 (1049)
.+... ....++||++.++.-|++...+.+..-+.+
T Consensus 1157 dl~Ks--sg~~lkP~~~~LIp~ll~~~s~lE~~vLnY 1191 (1702)
T KOG0915|consen 1157 DLAKS--SGKELKPHFPKLIPLLLNAYSELEPQVLNY 1191 (1702)
T ss_pred HHHHh--chhhhcchhhHHHHHHHHHccccchHHHHH
Confidence 77777 477999999999999999888766544333
No 49
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=1.8 Score=54.09 Aligned_cols=323 Identities=11% Similarity=0.122 Sum_probs=152.7
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc----c---cccccccchHHHHHHHHHHhhhhchhh--HHHHHHH
Q 001585 512 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC----R---DLNEIRPILPQLLDEFFKLMNEVENED--LVFTLET 582 (1049)
Q Consensus 512 ~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~----~---~~~~l~p~l~~il~~L~~ll~~~~~~~--l~~~l~~ 582 (1049)
+-+..+.+.+...+.-.. -.|..-|.+|+.+++.. + .++.+..+....|+.+|+......... ...+..+
T Consensus 514 ~sF~~la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~ 592 (1176)
T KOG1248|consen 514 ESFTDLAPILGAALLKRP-ELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRST 592 (1176)
T ss_pred HHHHHHHHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHH
Confidence 336777777777776432 57888999999999874 1 567788899999999999887643332 2222222
Q ss_pred HHHHcc-CcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHH
Q 001585 583 IVDKFG-EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRR 661 (1049)
Q Consensus 583 iv~~~~-~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~ 661 (1049)
..+... +-+.--..+++..|......... +.+ +.-.......+|+.+..+..+....+ +.++. .+.|..
T Consensus 593 ~L~~i~~~~~~~t~~dv~~~l~~s~~e~as----~~~-~s~~~~~~~slLdl~~~~a~~~~e~~--vs~l~-~v~~~~-- 662 (1176)
T KOG1248|consen 593 VLEIIRVDYFTVTPTDVVGSLKDSAGELAS----DLD-ESVASFKTLSLLDLLIALAPVQTESQ--VSKLF-TVDPEF-- 662 (1176)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhHhc----cch-hhhhhHHHHHHHHHHHhhhccccchh--HHHHH-HhhHHh--
Confidence 222222 22222224566666655444332 111 11122223345555555555543221 22222 223322
Q ss_pred HcccchhhHHHHHHHHHHHHhhcCCCC----CHHHHHHHHHHHHHHhhhHhhhHhhhHHhhhhHhhcCcccccccCCcch
Q 001585 662 MLTTDGQEVFEEVLEIVSYMTFFSPTI----SLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDY 737 (1049)
Q Consensus 662 ~l~~~~~~~~~~~l~ll~~l~~~~~~i----sp~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~ 737 (1049)
.++...-.---++.++..+... +.. ......++..+...++......--.-+.+|...+...+..+
T Consensus 663 -e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~-------- 732 (1176)
T KOG1248|consen 663 -ENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEH-------- 732 (1176)
T ss_pred -hccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHH--------
Confidence 2223344556677777777754 221 12233444444444433222222233445555444433222
Q ss_pred HHHHHHHH-HHHhcCCCCCCcccCchhhHHHHHH--Hhc-ccCchh---chHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001585 738 QQSLWSMV-SSIMADKNLEDGDIEPAPKLIEVVF--QNC-KGQVDH---WVEPYLRITVERLRRAEKSYLKCLLVQVIAD 810 (1049)
Q Consensus 738 ~~~i~~i~-~~~l~~~~~~~~~~~~a~~ll~~ii--~~~-~~~~~~---~l~~il~~~l~~l~~~~~~~~~~~~l~v~~~ 810 (1049)
.+.+...+ .-+|..+..++..+..++.+|..|. ... ...-+| .+..++..+...+....+.-.... .+-++
T Consensus 733 ~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~--Ivai~ 810 (1176)
T KOG1248|consen 733 CDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASD--IVAIT 810 (1176)
T ss_pred HHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHH--HHHHH
Confidence 22222222 2223334344555667888887776 331 111122 334444444333333222111111 22222
Q ss_pred HHhhCHHHHHHHHHhhCccHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHhccc
Q 001585 811 ALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALT 872 (1049)
Q Consensus 811 ~~~~~p~~~l~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~dkKl~~lal~~ll~~~ 872 (1049)
+++++-.. ++.. ..+..++++.+..+. .+..+..-.++|+.+.+...
T Consensus 811 ~il~e~~~---~ld~-~~l~~li~~V~~~L~-----------s~sreI~kaAI~fikvlv~~ 857 (1176)
T KOG1248|consen 811 HILQEFKN---ILDD-ETLEKLISMVCLYLA-----------SNSREIAKAAIGFIKVLVYK 857 (1176)
T ss_pred HHHHHHhc---cccH-HHHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHHHHHc
Confidence 22222111 1110 234555666666555 34566777788888877554
No 50
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.92 E-value=1.3 Score=51.59 Aligned_cols=402 Identities=15% Similarity=0.186 Sum_probs=224.4
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhh
Q 001585 402 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHV 481 (1049)
Q Consensus 402 ~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v 481 (1049)
+|..-.+.........|++....+++.-.+.|++. .+-..|++.+...|.++..+....+- .-.++ ..+
T Consensus 33 v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~-------~~~~~~~~~~v~~~~~a~~~~~~d~~---~~~~~-~~~ 101 (569)
T KOG1242|consen 33 VRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSL-------HNDNLRNNVVVLEGTLAFHLQIVDPR---PISII-EIL 101 (569)
T ss_pred hHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc-------hhHHHhhhhHHHHHHHHHhccccCcc---hhHHH-HHH
Confidence 44444444445555667666666777667777653 15678999999999999987643221 11222 234
Q ss_pred ccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHH
Q 001585 482 FPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLL 561 (1049)
Q Consensus 482 ~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il 561 (1049)
+..+..|.+.+|.....|+.-+.- .... ..-..+.+.+.++|......=|..|+.++..++.+. ..+.++++ .++
T Consensus 102 ~~~~~tps~~~q~~~~~~l~~~~~-~~~~-~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~-~i~~~~~~--~~l 176 (569)
T KOG1242|consen 102 LEELDTPSKSVQRAVSTCLPPLVV-LSKG-LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGL-GIESLKEF--GFL 176 (569)
T ss_pred HHhcCCCcHHHHHHHHHHhhhHHH-Hhhc-cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc-HHhhhhhh--hHH
Confidence 445677899999998888877652 2222 234667788888888767778899999999999886 35566654 466
Q ss_pred HHHHHHhhhhchh---h-HHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHH
Q 001585 562 DEFFKLMNEVENE---D-LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTI 637 (1049)
Q Consensus 562 ~~L~~ll~~~~~~---~-l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~l 637 (1049)
..|...++.-.+- + .....++.....+....||...+...+...+... ..-.+....++...+
T Consensus 177 ~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~-------------~~~Vr~Aa~~a~kai 243 (569)
T KOG1242|consen 177 DNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDK-------------INKVREAAVEAAKAI 243 (569)
T ss_pred HHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhcc-------------chhhhHHHHHHHHHH
Confidence 6676666543222 2 3334455666778888888887776665443221 112344567777777
Q ss_pred HHhhcCChHHHHHHHhhHHHHHHHHcccchhhHHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHhhhHhhhHhhhHH
Q 001585 638 LESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP-TISLEMWSLWPLMMEALADWAIDFFPNILV 716 (1049)
Q Consensus 638 l~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~-~isp~l~~l~~~l~~~~~~~~~~~l~~~~~ 716 (1049)
.+.+.. ..... .+.|.+..++.. ...--..++++++.+.+..+ +++-.+.++.|.+.+.+.+...+.-.....
T Consensus 244 ~~~~~~--~aVK~---llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~ 317 (569)
T KOG1242|consen 244 MRCLSA--YAVKL---LLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIE 317 (569)
T ss_pred HHhcCc--chhhH---hhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHH
Confidence 777642 22222 333333333322 22233567888888887654 455555666676666664433444445555
Q ss_pred hhhhHhhcCcccccccCCcchHHHHHHHHHHHhcCCCCCCcccCchhhHHHHHHHhcccCch-hchHHHHHHHHHHHHh-
Q 001585 717 PLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVD-HWVEPYLRITVERLRR- 794 (1049)
Q Consensus 717 ~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~-~~l~~il~~~l~~l~~- 794 (1049)
+|..|-.. . .|+. ++.+....-..++++... ..+.+..+. ...+- ..-++-+..+++.|..
T Consensus 318 ~l~~~~sv-----i--dN~d-I~~~ip~Lld~l~dp~~~------~~e~~~~L~---~ttFV~~V~~psLalmvpiL~R~ 380 (569)
T KOG1242|consen 318 TLLKFGSV-----I--DNPD-IQKIIPTLLDALADPSCY------TPECLDSLG---ATTFVAEVDAPSLALMVPILKRG 380 (569)
T ss_pred HHHHHHHh-----h--ccHH-HHHHHHHHHHHhcCcccc------hHHHHHhhc---ceeeeeeecchhHHHHHHHHHHH
Confidence 55554333 2 2333 555555555556554312 222222222 12222 2223445555555443
Q ss_pred --hhhhHHHHHHHHHHH-HH-HhhCHHHHHHHHHhhCccHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHhc
Q 001585 795 --AEKSYLKCLLVQVIA-DA-LYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLA 870 (1049)
Q Consensus 795 --~~~~~~~~~~l~v~~-~~-~~~~p~~~l~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~dkKl~~lal~~ll~ 870 (1049)
......+.....++- +| ++.+|.-+..+|.+ ++...-..+. .. -+.-|-+..-||+.++.
T Consensus 381 l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~------Llp~lk~~~~---------d~-~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 381 LAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPS------LLPGLKENLD---------DA-VPEVRAVAARALGALLE 444 (569)
T ss_pred HhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHH------HhhHHHHHhc---------CC-ChhHHHHHHHHHHHHHH
Confidence 122222222222222 22 24478877776653 2222112222 22 35567788888888885
Q ss_pred c
Q 001585 871 L 871 (1049)
Q Consensus 871 ~ 871 (1049)
.
T Consensus 445 ~ 445 (569)
T KOG1242|consen 445 R 445 (569)
T ss_pred H
Confidence 4
No 51
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.92 E-value=0.1 Score=60.22 Aligned_cols=222 Identities=17% Similarity=0.248 Sum_probs=129.2
Q ss_pred cCcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcC-ChHHHHHHHhhHHHHHHHHcccc
Q 001585 588 GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSR-LPHLFVQIEPTLLPIMRRMLTTD 666 (1049)
Q Consensus 588 ~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~-~~~~~~~l~~~~~p~i~~~l~~~ 666 (1049)
++.+.|++..+.++|...+.. +... + +.+++.|+-.++..+++ .......+-+.+..++..+..|.
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~----~~s~-----E----NeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNP 83 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEK----PGSA-----E----NEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNP 83 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHT----T-ST-----C-----HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS-
T ss_pred HHHhhhhHHHHHHHHHHHHhc----CCCc-----c----chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 467899999999998865432 1111 1 22778888888877643 23345566677777777776654
Q ss_pred -hhhHHHHHHHHHHHHhhcCCCCCHH-----HHHHHHHHHHHHhhhHhhhHhhhHHhhhhHhhcCc-ccccccCCcchHH
Q 001585 667 -GQEVFEEVLEIVSYMTFFSPTISLE-----MWSLWPLMMEALADWAIDFFPNILVPLDNYISRGT-AHFLTCKEPDYQQ 739 (1049)
Q Consensus 667 -~~~~~~~~l~ll~~l~~~~~~isp~-----l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~-~~~l~~~~~~~~~ 739 (1049)
...|-.+.|+.++.++++...-.|. --.+||.+..++.++-.+++|.++.+|-..+...+ ..+- +.|.
T Consensus 84 snP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p----~~y~- 158 (435)
T PF03378_consen 84 SNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLP----DAYK- 158 (435)
T ss_dssp --HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S------TTTG-
T ss_pred CCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc----HHHH-
Confidence 4579999999999999875433333 34778888888888888999998888877777766 2221 1232
Q ss_pred HHHHHHHHHhcCCCCCCcc--cCchhhHHHHHHHhcccCc--hhchHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHhh
Q 001585 740 SLWSMVSSIMADKNLEDGD--IEPAPKLIEVVFQNCKGQV--DHWVEPYLRITVERLRRAE-KSYLKCLLVQVIADALYY 814 (1049)
Q Consensus 740 ~i~~i~~~~l~~~~~~~~~--~~~a~~ll~~ii~~~~~~~--~~~l~~il~~~l~~l~~~~-~~~~~~~~l~v~~~~~~~ 814 (1049)
+++..++... ..+.. .-...+++.+++.+.+..+ .+.+.+++... ++|-..+ +....-.++..+. .+
T Consensus 159 ---~L~~~Ll~p~-lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvF-QkLi~sk~~D~~gF~LL~~iv---~~ 230 (435)
T PF03378_consen 159 ---QLFPPLLSPA-LWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVF-QKLIASKANDHYGFDLLESIV---EN 230 (435)
T ss_dssp ---GGHHHHTSGG-GGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHH-HHHHT-TTCHHHHHHHHHHHH---HH
T ss_pred ---HHHHHHcCcc-hhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHH-HHHHCCCCcchHHHHHHHHHH---HH
Confidence 2333334322 11111 1235678888888877664 36777887765 5554333 2222222333332 23
Q ss_pred CHH-HHHHHHHhhCccHHHHHHHHHHHH
Q 001585 815 NSS-LTLSILHKLGVATEVFNLWFQMLQ 841 (1049)
Q Consensus 815 ~p~-~~l~~L~~~~~~~~~~~~w~~~~~ 841 (1049)
-|. ..-+++ ..++...+.++.
T Consensus 231 ~p~~~l~~yl------~~I~~lll~RLq 252 (435)
T PF03378_consen 231 LPPEALEPYL------KQIFTLLLTRLQ 252 (435)
T ss_dssp S-HHHHGGGH------HHHHHHHHHHHH
T ss_pred CCHHHHHHHH------HHHHHHHHHHHh
Confidence 343 334444 556766677766
No 52
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.83 E-value=1.6 Score=51.34 Aligned_cols=173 Identities=14% Similarity=0.231 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhhhc-CCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccc--cCChhHHHHHHHHHHhcCCCC
Q 001585 452 ALLAIGALCDKLKQ-TEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN--FSDQNNFRKALHSVVSGLRDP 528 (1049)
Q Consensus 452 al~~lg~la~~l~~-~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~--f~~~~~~~~~~~~ll~~L~d~ 528 (1049)
.|..+|.++..+.. .++|.++ +...++-.|+++.|-+|-+|..++|+.+.+. ...+..+..+=..+...|...
T Consensus 778 ml~gfg~V~~~lg~r~kpylpq----i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgee 853 (1172)
T KOG0213|consen 778 MLLGFGTVVNALGGRVKPYLPQ----ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEE 853 (1172)
T ss_pred hhhhHHHHHHHHhhccccchHH----HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcc
Confidence 45567777776643 4455433 4456777899999999999999999997642 112233344444455667655
Q ss_pred CCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchh---hHHHHHHHHHHHccCccccc-HHHHHHHHHH
Q 001585 529 ELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE---DLVFTLETIVDKFGEEMAPY-ALGLCQNLAA 604 (1049)
Q Consensus 529 ~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~---~l~~~l~~iv~~~~~~i~p~-~~~l~~~L~~ 604 (1049)
.+-|--.-..|++.+++... -....|=+..|+..|..+++.-... .-..++..|..+..+-+.+- =..||-.|..
T Consensus 854 ypEvLgsILgAikaI~nvig-m~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLle 932 (1172)
T KOG0213|consen 854 YPEVLGSILGAIKAIVNVIG-MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLE 932 (1172)
T ss_pred cHHHHHHHHHHHHHHHHhcc-ccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 44454444455555554431 2334555666777777777653322 23455666666666644321 1234434443
Q ss_pred HHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhc
Q 001585 605 AFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVS 642 (1049)
Q Consensus 605 ~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~ 642 (1049)
.+ +.|+ +.+ +-...++++-|.++++
T Consensus 933 lL-kahk-----------K~i-RRaa~nTfG~IakaIG 957 (1172)
T KOG0213|consen 933 LL-KAHK-----------KEI-RRAAVNTFGYIAKAIG 957 (1172)
T ss_pred HH-HHHH-----------HHH-HHHHHhhhhHHHHhcC
Confidence 22 2232 222 2356777777777776
No 53
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.82 E-value=0.00093 Score=52.79 Aligned_cols=54 Identities=26% Similarity=0.343 Sum_probs=43.0
Q ss_pred cchhHHHHHHHHHhhccccC-ChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 001585 490 GHLRAKAAWVAGQYAHINFS-DQNNFRKALHSVVSGLRDPELPVRVDSVFALRSF 543 (1049)
Q Consensus 490 ~~lr~ra~~~l~~~~~~~f~-~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~ 543 (1049)
|.+|..|+|++|+++..... -..+...+++.++.+|.|++..||..||.||.++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46899999999997643211 1156789999999999988889999999999764
No 54
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.014 Score=66.88 Aligned_cols=222 Identities=13% Similarity=0.175 Sum_probs=121.5
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCc-chhHHHHHHHHHhhccc-cCCh-hHHHHHHHHH
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVG-HLRAKAAWVAGQYAHIN-FSDQ-NNFRKALHSV 521 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~-~lr~ra~~~l~~~~~~~-f~~~-~~~~~~~~~l 521 (1049)
+-..+|-|..++|.++.......++.-+ .=....++..+..+.+ -+.+.+.|+++.++..+ ..++ +....++|++
T Consensus 165 ~~~v~eQavWALgNIagds~~~Rd~vl~--~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L 242 (514)
T KOG0166|consen 165 SADVREQAVWALGNIAGDSPDCRDYVLS--CGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPAL 242 (514)
T ss_pred cHHHHHHHHHHHhccccCChHHHHHHHh--hcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 5578999999999999764322111100 0011122223344444 57778999999998765 3333 6789999999
Q ss_pred HhcCCCCCCchHHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHhhhhchhhHHHHHHHHHH--HccCcccccHHHH
Q 001585 522 VSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPI-LPQLLDEFFKLMNEVENEDLVFTLETIVD--KFGEEMAPYALGL 598 (1049)
Q Consensus 522 l~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~-l~~il~~L~~ll~~~~~~~l~~~l~~iv~--~~~~~i~p~~~~l 598 (1049)
..++.+.|.-|..-||+|+..+.+... +.+.-. --.++..|..++...+.....-+|.++.. +..+..+. +. +
T Consensus 243 ~~ll~~~D~~Vl~Da~WAlsyLsdg~n--e~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq-~v-i 318 (514)
T KOG0166|consen 243 LRLLHSTDEEVLTDACWALSYLTDGSN--EKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQ-VV-I 318 (514)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCCh--HHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHH-HH-H
Confidence 999999999999999999999998763 222111 11344455556655444334444444432 11111111 10 0
Q ss_pred HHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCCh-HHHHHHHhhHHHHHHHHcccchhhHHHHHHHH
Q 001585 599 CQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLP-HLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEI 677 (1049)
Q Consensus 599 ~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~~~-~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~l 677 (1049)
-..+.+.|..+..+.. +......+.=+|+.|.. .++ .+-.-+..-++|.+..+++....+.--++.=.
T Consensus 319 ~~~~L~~l~~ll~~s~--------~~~ikkEAcW~iSNItA---G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawa 387 (514)
T KOG0166|consen 319 NSGALPVLSNLLSSSP--------KESIKKEACWTISNITA---GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWA 387 (514)
T ss_pred hcChHHHHHHHhccCc--------chhHHHHHHHHHHHhhc---CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence 0122223444443211 01011112223333332 233 23333456789999999987666666666655
Q ss_pred HHHHhh
Q 001585 678 VSYMTF 683 (1049)
Q Consensus 678 l~~l~~ 683 (1049)
+++++.
T Consensus 388 IsN~ts 393 (514)
T KOG0166|consen 388 ISNLTS 393 (514)
T ss_pred HHhhcc
Confidence 555553
No 55
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.70 E-value=0.11 Score=57.31 Aligned_cols=175 Identities=15% Similarity=0.193 Sum_probs=113.2
Q ss_pred hHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccc
Q 001585 472 ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLN 551 (1049)
Q Consensus 472 ~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~ 551 (1049)
.++.++.+.|.|.++++++-+|.+|..++|-++-. +.+...+.++.+.+.++..+..|+..|..++-.++-... .+
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Ll---d~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g-~~ 98 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCLL---DKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHG-ID 98 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-ch
Confidence 46688888999999999999999999999999854 345677788888888865578899999999999887642 12
Q ss_pred cc--------ccchHHHHHHHHHHhhhhchhhHHHHHHHHHHHc-cCcccccHHHHHHHHHHHHHHHHhcccCCCCCCCh
Q 001585 552 EI--------RPILPQLLDEFFKLMNEVENEDLVFTLETIVDKF-GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDP 622 (1049)
Q Consensus 552 ~l--------~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~-~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~ 622 (1049)
.+ ......+++.+.+.+...+.+....+.+.+..-+ ...+.+ -+.+...|.- .|=++...+
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~-~~~vL~~Lll----~yF~p~t~~----- 168 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD-PPKVLSRLLL----LYFNPSTED----- 168 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHH----HHcCcccCC-----
Confidence 22 2334567777777776554343344445555432 334433 2455555442 233222111
Q ss_pred hHHHHHHHHHHHHHHHHhh-cCChHHHHHHHhhHHHHHHHHcc
Q 001585 623 GALAAVGCLRAISTILESV-SRLPHLFVQIEPTLLPIMRRMLT 664 (1049)
Q Consensus 623 ~~~~~~~~le~i~~ll~~~-~~~~~~~~~l~~~~~p~i~~~l~ 664 (1049)
+ ..+-+|++..+... ..++..-..+...++|.+..+..
T Consensus 169 ~----~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 169 N----QRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSN 207 (298)
T ss_pred c----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 1 14556666666665 34555556677777888877765
No 56
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.68 E-value=0.0072 Score=53.75 Aligned_cols=92 Identities=16% Similarity=0.233 Sum_probs=69.7
Q ss_pred hhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCCh--hHHHHHHHHHHhcC
Q 001585 448 QKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGL 525 (1049)
Q Consensus 448 ~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~--~~~~~~~~~ll~~L 525 (1049)
.|.|++.++.+++.++.+. ....++. +.+.|+.-+.++++.+|.-||..+...+.. .+.. .++.+++.++.+.+
T Consensus 2 ~R~ggli~Laa~ai~l~~~--~~~~l~~-Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~-~~~~~l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD--ISKYLDE-ILPPVLKCFDDQDSRVRYYACEALYNISKV-ARGEILPYFNEIFDALCKLS 77 (97)
T ss_pred chhHHHHHHHHHHHHchHh--HHHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999888653 2233333 445566778899999999999999998764 2333 56899999999999
Q ss_pred CCCCCchHHHHHHHHHHHH
Q 001585 526 RDPELPVRVDSVFALRSFV 544 (1049)
Q Consensus 526 ~d~~~~V~~~Aa~AL~~~~ 544 (1049)
.|++..||..| ..|.+++
T Consensus 78 ~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 78 ADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred cCCchhHHHHH-HHHHHHh
Confidence 99999999866 4444443
No 57
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=1.5 Score=52.22 Aligned_cols=253 Identities=17% Similarity=0.206 Sum_probs=138.2
Q ss_pred hhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCC-CcchhHHHHHHHHHh-hccccCCh---hHHHHHHHHHHh
Q 001585 449 KDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSP-VGHLRAKAAWVAGQY-AHINFSDQ---NNFRKALHSVVS 523 (1049)
Q Consensus 449 keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~-~~~lr~ra~~~l~~~-~~~~f~~~---~~~~~~~~~ll~ 523 (1049)
|.-....+|...+.- .+.++-+.+-...+..++++ ...+|-.+.-.+--. -++.|+.. .++..++..+.+
T Consensus 504 RRRVa~ilg~Wvsvq-----~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfk 578 (978)
T KOG1993|consen 504 RRRVAWILGQWVSVQ-----QKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFK 578 (978)
T ss_pred HHHHHHHHhhhhhee-----chHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHH
Confidence 333444556555421 11233333334455566765 566676666665443 34667654 345666666666
Q ss_pred cCCC-CCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh-----HHHHHHHHHHHccCc---cccc
Q 001585 524 GLRD-PELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED-----LVFTLETIVDKFGEE---MAPY 594 (1049)
Q Consensus 524 ~L~d-~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~-----l~~~l~~iv~~~~~~---i~p~ 594 (1049)
.+.. +..--|.+--..+..++.. ..+.+.|+...+++-+=.+=.+.+.+. +..+|..+|...+.. +.|+
T Consensus 579 ll~~~~e~Dtk~~VL~~ls~lI~r--~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~f 656 (978)
T KOG1993|consen 579 LLKAVEECDTKTSVLNLLSTLIER--VSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPF 656 (978)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHH
Confidence 6653 2334677778888888887 478999999999887777766666553 566788888877654 4455
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccchhhHHHHH
Q 001585 595 ALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEV 674 (1049)
Q Consensus 595 ~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~ 674 (1049)
+..+++.-+ |+..- +...+..--++.-.+.+.....-+.-+-.+.+.+.|.|.. ..+-++.+
T Consensus 657 L~pVIel~~------------D~~sP-~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~-----ste~L~t~ 718 (978)
T KOG1993|consen 657 LYPVIELST------------DPSSP-EHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQ-----STENLPTV 718 (978)
T ss_pred HHHHHHHhc------------CCCCC-ceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHh-----hhhhHHHH
Confidence 544443222 22110 0111111112333334443322222223344455554444 34566778
Q ss_pred HHHHHHHhhcCCC--CCHHHHHHHHHHHHHHhhhHhhhHhhhHHhhhhHhhcCc
Q 001585 675 LEIVSYMTFFSPT--ISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGT 726 (1049)
Q Consensus 675 l~ll~~l~~~~~~--isp~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~ 726 (1049)
++|+.+.+....+ .+.+...+|..+...+++-..+-+..++++++..+...+
T Consensus 719 l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~~ 772 (978)
T KOG1993|consen 719 LMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNP 772 (978)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhH
Confidence 8888876543221 122334556666666655555667777777777666554
No 58
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.44 E-value=3.5 Score=50.21 Aligned_cols=143 Identities=15% Similarity=0.162 Sum_probs=97.6
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhc
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 524 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~ 524 (1049)
+-..|.-+++=+-..+.. .++..-...+.+..++++++|.+|+-|+-++|.. +.++....+++.+.++
T Consensus 68 d~ElKrL~ylYl~~yak~-------~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l-----~~~el~~~~~~~ik~~ 135 (757)
T COG5096 68 DVELKRLLYLYLERYAKL-------KPELALLAVNTIQKDLQDPNEEIRGFALRTLSLL-----RVKELLGNIIDPIKKL 135 (757)
T ss_pred CHHHHHHHHHHHHHHhcc-------CHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc-----ChHHHHHHHHHHHHHH
Confidence 445555555444443332 2344444567788899999999999999999664 3557899999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHHccCcccccHHHHHHHHH
Q 001585 525 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLA 603 (1049)
Q Consensus 525 L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~ 603 (1049)
+.|++.-||-+|+.|+..+.+-. ++.+..- + .+..+-.++.+.+..-+..++-++.+...+...+|...++..+.
T Consensus 136 l~d~~ayVRk~Aalav~kly~ld--~~l~~~~-g-~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~ 210 (757)
T COG5096 136 LTDPHAYVRKTAALAVAKLYRLD--KDLYHEL-G-LIDILKELVADSDPIVIANALASLAEIDPELAHGYSLEVILRIP 210 (757)
T ss_pred ccCCcHHHHHHHHHHHHHHHhcC--Hhhhhcc-c-HHHHHHHHhhCCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhh
Confidence 99999999999999999999764 2222221 1 22333344445544456677777777666666777777666554
No 59
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=0.81 Score=54.49 Aligned_cols=150 Identities=17% Similarity=0.212 Sum_probs=101.5
Q ss_pred CCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHh
Q 001585 444 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 523 (1049)
Q Consensus 444 ~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~ 523 (1049)
.+|..|--|+..+|++--. .+-..+..-+..-+++.+|++|..|..++..+-...- ....-..++..+-.
T Consensus 98 ~np~iR~lAlrtm~~l~v~---------~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~-~~~~~~gl~~~L~~ 167 (734)
T KOG1061|consen 98 PNPLIRALALRTMGCLRVD---------KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP-DLVEDSGLVDALKD 167 (734)
T ss_pred CCHHHHHHHhhceeeEeeh---------HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh-hhccccchhHHHHH
Confidence 3898888888887765321 2233344445556788999999999999988754321 11233455666666
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHHccCcccccHHHHHHHHH
Q 001585 524 GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLA 603 (1049)
Q Consensus 524 ~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~ 603 (1049)
.+.|+++.|-..|..||..+.+... .....-...+++..++..+++...=.-..+|++........-.+ +.++++++.
T Consensus 168 ll~D~~p~VVAnAlaaL~eI~e~~~-~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~e-a~~i~~r~~ 245 (734)
T KOG1061|consen 168 LLSDSNPMVVANALAALSEIHESHP-SVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSRE-AEDICERLT 245 (734)
T ss_pred HhcCCCchHHHHHHHHHHHHHHhCC-CCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchh-HHHHHHHhh
Confidence 6779998899999999999988742 23445566788888888888765556777888887766544322 556777666
Q ss_pred HH
Q 001585 604 AA 605 (1049)
Q Consensus 604 ~~ 605 (1049)
+.
T Consensus 246 p~ 247 (734)
T KOG1061|consen 246 PR 247 (734)
T ss_pred hh
Confidence 44
No 60
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.30 E-value=0.053 Score=54.79 Aligned_cols=150 Identities=15% Similarity=0.200 Sum_probs=99.6
Q ss_pred hhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCC
Q 001585 447 RQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR 526 (1049)
Q Consensus 447 ~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~ 526 (1049)
..|-.++.++|-++-... .-+++|+ ..+..-|++++|.+|..|+.++++...-.+-. .-..++..++.++.
T Consensus 3 ~vR~n~i~~l~DL~~r~~------~~ve~~~-~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik--~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYP------NLVEPYL-PNLYKCLRDEDPLVRKTALLVLSHLILEDMIK--VKGQLFSRILKLLV 73 (178)
T ss_pred HHHHHHHHHHHHHHHhCc------HHHHhHH-HHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee--ehhhhhHHHHHHHc
Confidence 345566666665554421 2345544 56777889999999999999999975422211 23455677778889
Q ss_pred CCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhh-----hhchhhHHHHHHHHHHHccCcccccHHHHHHH
Q 001585 527 DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMN-----EVENEDLVFTLETIVDKFGEEMAPYALGLCQN 601 (1049)
Q Consensus 527 d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~-----~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~ 601 (1049)
|++..||..|..++..+.... .+..+..++++++..|-...+ ..+.+....++.-++..+.++ .....++++
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~~-~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d--~~~~~l~~k 150 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKKR-NPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKD--KQKESLVEK 150 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcH--HHHHHHHHH
Confidence 999999999999999999874 366677777777666554332 123344566777777776631 234466667
Q ss_pred HHHHHHH
Q 001585 602 LAAAFWR 608 (1049)
Q Consensus 602 L~~~~~~ 608 (1049)
|++.+..
T Consensus 151 l~~~~~~ 157 (178)
T PF12717_consen 151 LCQRFLN 157 (178)
T ss_pred HHHHHHH
Confidence 7655544
No 61
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.29 E-value=0.0051 Score=57.41 Aligned_cols=99 Identities=12% Similarity=0.063 Sum_probs=67.5
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhH-H-HHHHHHHH
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN-F-RKALHSVV 522 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~-~-~~~~~~ll 522 (1049)
+|..++.++.+++.++....... ..-+..-....+++.+.++++.+|..|+|++++++......... . ..+++.++
T Consensus 20 ~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~ 97 (120)
T cd00020 20 DENVQREAAWALSNLSAGNNDNI--QAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLV 97 (120)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHH--HHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHH
Confidence 68999999999999986521110 00011011233444556788999999999999998632111121 1 23688899
Q ss_pred hcCCCCCCchHHHHHHHHHHHHH
Q 001585 523 SGLRDPELPVRVDSVFALRSFVE 545 (1049)
Q Consensus 523 ~~L~d~~~~V~~~Aa~AL~~~~~ 545 (1049)
++|++.+..++..|+.+|.+++.
T Consensus 98 ~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 98 NLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHhhC
Confidence 99998888999999999998863
No 62
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.23 E-value=1.3 Score=50.98 Aligned_cols=190 Identities=14% Similarity=0.186 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhc-CCCchhhHHHHHHHh
Q 001585 402 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQ-TEPYKSELERMLVQH 480 (1049)
Q Consensus 402 ~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~-~~~~~~~~~~~l~~~ 480 (1049)
+|..........++++|- +.+++|+.....+- +.|+.|..++.++..|+..+.. .-++..++.. .
T Consensus 297 VRnvt~ra~~vva~algv---~~llpfl~a~c~Sr-------kSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~----c 362 (975)
T COG5181 297 VRNVTGRAVGVVADALGV---EELLPFLEALCGSR-------KSWEARHTGIRIAQQICELLGRSRLSHLGPLLK----C 362 (975)
T ss_pred HHHHHHHHHHHHHHhhCc---HHHHHHHHHHhcCc-------cchhhhchhhHHHHHHHHHhCccHHhhhhhHHH----H
Confidence 344444556667777763 34667776665442 3799999999999999987642 1122333333 3
Q ss_pred hccccCCCCcchhHHHHHHHHHhhccccCCh--hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchH
Q 001585 481 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILP 558 (1049)
Q Consensus 481 v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~--~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~ 558 (1049)
+-..+.+.+.++|--+...+|..++.. -+. +.+..++.-+-...+..--.+-.+=..|...++... .+++..-+-.
T Consensus 363 i~~~l~D~~~~vRi~tA~alS~lae~~-~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm-~peYa~h~tr 440 (975)
T COG5181 363 ISKLLKDRSRFVRIDTANALSYLAELV-GPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLM-SPEYACHDTR 440 (975)
T ss_pred HHHHhhccceeeeehhHhHHHHHHHhc-CCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccC-ChHhhhhhHH
Confidence 333456778899998888888887632 111 344445444444433222122233334444444443 4677777888
Q ss_pred HHHHHHHHHhhhhchhh--HHHHHHHHHHHccCccccc--HHHHHHHHHHHHHH
Q 001585 559 QLLDEFFKLMNEVENED--LVFTLETIVDKFGEEMAPY--ALGLCQNLAAAFWR 608 (1049)
Q Consensus 559 ~il~~L~~ll~~~~~~~--l~~~l~~iv~~~~~~i~p~--~~~l~~~L~~~~~~ 608 (1049)
..|+.++..++..+.+- ...+...+.... +.++|. -.++...+.+.||+
T Consensus 441 e~m~iv~ref~spdeemkk~~l~v~~~C~~v-~~~tp~~lr~~v~pefF~~fw~ 493 (975)
T COG5181 441 EHMEIVFREFKSPDEEMKKDLLVVERICDKV-GTDTPWKLRDQVSPEFFSPFWR 493 (975)
T ss_pred HHHHHHHHHhCCchhhcchhHHHHHHHHhcc-CCCCHHHHHHhhcHHhhchHHH
Confidence 99999999998876552 222223333322 234442 24555555556665
No 63
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=4.8 Score=48.36 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=74.4
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhc
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 524 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~ 524 (1049)
+...|.-.|.+...+-+ +. .++--++++.+..+|++++.++.+-|+-.+|+.+ ++|+...++|-+-..
T Consensus 83 ~f~dKRiGYLaamLlLd---E~----qdvllLltNslknDL~s~nq~vVglAL~alg~i~-----s~EmardlapeVe~L 150 (866)
T KOG1062|consen 83 NFLDKRIGYLAAMLLLD---ER----QDLLLLLTNSLKNDLNSSNQYVVGLALCALGNIC-----SPEMARDLAPEVERL 150 (866)
T ss_pred CchHHHHHHHHHHHHhc---cc----hHHHHHHHHHHHhhccCCCeeehHHHHHHhhccC-----CHHHhHHhhHHHHHH
Confidence 66777766666554432 22 3556678888999999999999999999998875 457899999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHhc
Q 001585 525 LRDPELPVRVDSVFALRSFVEAC 547 (1049)
Q Consensus 525 L~d~~~~V~~~Aa~AL~~~~~~~ 547 (1049)
|+.+++-||-.|+.|..+|++..
T Consensus 151 l~~~~~~irKKA~Lca~r~irK~ 173 (866)
T KOG1062|consen 151 LQHRDPYIRKKAALCAVRFIRKV 173 (866)
T ss_pred HhCCCHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999874
No 64
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.09 E-value=5.5 Score=48.99 Aligned_cols=407 Identities=17% Similarity=0.150 Sum_probs=208.1
Q ss_pred CCCHHHHHHHHHHHHHhcc-------CCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCcCCCCChHHHH
Q 001585 15 SPNPEERKAAEHSLNQFQY-------TPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKD 87 (1049)
Q Consensus 15 s~d~~~r~~AE~~L~~~~~-------~p~f~~~Ll~i~~~~~~~~~iRq~Aai~lKn~i~~~W~~~~~~~~~~i~~~~k~ 87 (1049)
.-++.+|+.+...+-.+.+ ..+....+.++..+.+ ..+|.+| +-=-..+-..... +.+...
T Consensus 248 d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~Ddq--dsVr~~a-~~~~~~l~~l~~~---------~~d~~~ 315 (759)
T KOG0211|consen 248 DDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQ--DSVREAA-VESLVSLLDLLDD---------DDDVVK 315 (759)
T ss_pred ccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcch--hhHHHHH-HHHHHHHHHhcCC---------chhhhh
Confidence 3456789998888876654 2245566666666543 5788765 3333444444442 116667
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhCC-CCchhHHHHHHHHhhhh--hHHHHHHH-HHHHHHhcccCCCCccc
Q 001585 88 MVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ--QVYGALFV-LRILSRKYEYQPTDSTS 163 (1049)
Q Consensus 88 ~ir~~ll~~L~~~~~~ir~~l~~~i~~Ia~~d~P-~~Wp~Ll~~l~~~l~s~--~~~~~L~~-L~~i~k~~~~~~t~~~~ 163 (1049)
.+-..+++...+..-.+|...+.....+...--| ..|+++.+.....+... ..+.+... ..+++...
T Consensus 316 ~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l--------- 386 (759)
T KOG0211|consen 316 SLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYL--------- 386 (759)
T ss_pred hhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhc---------
Confidence 7777788888888888999999888888887667 56999999998888766 23333221 11222211
Q ss_pred cccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHhhhccCCcccCChhhHHHHHH
Q 001585 164 MKGYRIYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMI 243 (1049)
Q Consensus 164 ~~~~r~~~~~~~~~~~~l~~i~~~~~p~Ll~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~lp~~~~~~~~l~~~~~ 243 (1049)
+..-+. .-..+.++|.+..+... .+ ..++....... +.+-+.+-.+..+....+
T Consensus 387 ----------~~~~~~--~i~~~~ilp~~~~lv~d----~~-----~~vr~a~a~~~-----~~~~p~~~k~~ti~~llp 440 (759)
T KOG0211|consen 387 ----------NASCYP--NIPDSSILPEVQVLVLD----NA-----LHVRSALASVI-----TGLSPILPKERTISELLP 440 (759)
T ss_pred ----------Cccccc--ccchhhhhHHHHHHHhc----cc-----chHHHHHhccc-----cccCccCCcCcCccccCh
Confidence 100010 01122234544332221 11 12221111111 111000001122333333
Q ss_pred HHHHHhcCCCCCCCCCCChhhhhhcchHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001585 244 LFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNR 323 (1049)
Q Consensus 244 ~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~ 323 (1049)
.+...++.. +. .++-.+...+..+-.-.+... .. ......+|.+. .
T Consensus 441 ~~~~~l~de--------~~---------~V~lnli~~ls~~~~v~~v~g---~~------~~s~slLp~i~--------e 486 (759)
T KOG0211|consen 441 LLIGNLKDE--------DP---------IVRLNLIDKLSLLEEVNDVIG---IS------TVSNSLLPAIV--------E 486 (759)
T ss_pred hhhhhcchh--------hH---------HHHHhhHHHHHHHHhccCccc---ch------hhhhhhhhhhh--------h
Confidence 333322211 10 111112211111111111000 00 00111222211 1
Q ss_pred hhCCcccCHHHHHHHHHHHHhhcCCchhhhhchhhHHHHHHHHhhhccccChhhHhhhhcCHHHHHhHhcCcccccCCHH
Q 001585 324 IRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPR 403 (1049)
Q Consensus 324 ~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R 403 (1049)
.. .+..-+++..+++++-..+.... ...+.+.+.+++. .|. .+-.++.|
T Consensus 487 l~--~d~~wRvr~ail~~ip~la~q~~-~~~~~~~~~~l~~---------------~~l-------------~d~v~~Ir 535 (759)
T KOG0211|consen 487 LA--EDLLWRVRLAILEYIPQLALQLG-VEFFDEKLAELLR---------------TWL-------------PDHVYSIR 535 (759)
T ss_pred hc--cchhHHHHHHHHHHHHHHHHhhh-hHHhhHHHHHHHH---------------hhh-------------hhhHHHHH
Confidence 10 11233666666666655543321 1233333333221 121 11257899
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhcc
Q 001585 404 TASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFP 483 (1049)
Q Consensus 404 ~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p 483 (1049)
.+|...+..++..+|..-. ....+...|....+ .+|+.|-+.++++..++..+... -+..++-+ .+..
T Consensus 536 ~~aa~~l~~l~~~~G~~w~--~~~~i~k~L~~~~q-----~~y~~R~t~l~si~~la~v~g~e-i~~~~Llp----~~~~ 603 (759)
T KOG0211|consen 536 EAAARNLPALVETFGSEWA--RLEEIPKLLAMDLQ-----DNYLVRMTTLFSIHELAEVLGQE-ITCEDLLP----VFLD 603 (759)
T ss_pred HHHHHHhHHHHHHhCcchh--HHHhhHHHHHHhcC-----cccchhhHHHHHHHHHHHHhccH-HHHHHHhH----HHHH
Confidence 9999999999999984321 11222233322111 17999999999999999887541 11122222 2222
Q ss_pred ccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 001585 484 EFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 546 (1049)
Q Consensus 484 ~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~ 546 (1049)
...++.|-+|-.++..+-.+.... ..+..-..++|+....-.|++.-||..|..|+..+-..
T Consensus 604 l~~D~vanVR~nvak~L~~i~~~L-~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 604 LVKDPVANVRINVAKHLPKILKLL-DESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred hccCCchhhhhhHHHHHHHHHhhc-chHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 335788999999999998886643 12234466777777777799999999999998876544
No 65
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.08 E-value=0.073 Score=52.89 Aligned_cols=131 Identities=16% Similarity=0.218 Sum_probs=99.4
Q ss_pred hHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccc-cCC-hhHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHHHhcc
Q 001585 472 ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN-FSD-QNNFRKALHSVVSGLRDPE-LPVRVDSVFALRSFVEACR 548 (1049)
Q Consensus 472 ~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~-f~~-~~~~~~~~~~ll~~L~d~~-~~V~~~Aa~AL~~~~~~~~ 548 (1049)
.+..| ...+...++++.+.-|..++-+++..++.. +.- .+.....+..+++.|+.++ ..+...|+.++..++....
T Consensus 22 ~l~~l-~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 22 ALHKL-VTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHH-HHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34343 355777788888888888888888775531 100 0456778889999998654 5688999999999997653
Q ss_pred -----cccccccchHHHHHHHHHHhhh-hchhhHHHHHHHHHHHccCcccccHHHHHHHHH
Q 001585 549 -----DLNEIRPILPQLLDEFFKLMNE-VENEDLVFTLETIVDKFGEEMAPYALGLCQNLA 603 (1049)
Q Consensus 549 -----~~~~l~p~l~~il~~L~~ll~~-~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~ 603 (1049)
.++...|+++.+++.++++++. ...+....++..++..+..-+.||+..+-..+.
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~ 161 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPHHPTTFRPFANKIESALL 161 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCccccchHHHHHHHHH
Confidence 4567889999999999999983 334568889999999999999999988766555
No 66
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.00 E-value=0.99 Score=53.02 Aligned_cols=188 Identities=13% Similarity=0.198 Sum_probs=105.3
Q ss_pred CCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHH
Q 001585 488 PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKL 567 (1049)
Q Consensus 488 ~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~l 567 (1049)
..+-.+.-|.-+|.+|.. .| |+.....+.+++.+..|.+..||..|...|-.+|.+. + .++..+...|.++
T Consensus 34 g~~k~K~Laaq~I~kffk-~F--P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~--~----~~v~kvaDvL~Ql 104 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFK-HF--PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN--P----EHVSKVADVLVQL 104 (556)
T ss_dssp S-HHHHHHHHHHHHHHHC-C---GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--------T-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh-hC--hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH--H----HHHhHHHHHHHHH
Confidence 456688889999999865 23 4678999999999999999999999999999999863 1 3667777888888
Q ss_pred hhhhchhhHHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcC---C
Q 001585 568 MNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSR---L 644 (1049)
Q Consensus 568 l~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~---~ 644 (1049)
++.-+..++..+=.+++.-+.-+-. ..|...|-++......| ...+..++..|..-+..+.. .
T Consensus 105 L~tdd~~E~~~v~~sL~~ll~~d~k-------~tL~~lf~~i~~~~~~d-------e~~Re~~lkFl~~kl~~l~~~~~~ 170 (556)
T PF05918_consen 105 LQTDDPVELDAVKNSLMSLLKQDPK-------GTLTGLFSQIESSKSGD-------EQVRERALKFLREKLKPLKPELLT 170 (556)
T ss_dssp TT---HHHHHHHHHHHHHHHHH-HH-------HHHHHHHHHHH---HS--------HHHHHHHHHHHHHHGGGS-TTTS-
T ss_pred HhcccHHHHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHhcccCc-------hHHHHHHHHHHHHHHhhCcHHHhh
Confidence 8765545554444455444432211 11222233332111111 12345567777666666531 1
Q ss_pred hHHHHHHHhhHHHHHHHHcccchh-hHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHH
Q 001585 645 PHLFVQIEPTLLPIMRRMLTTDGQ-EVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMME 701 (1049)
Q Consensus 645 ~~~~~~l~~~~~p~i~~~l~~~~~-~~~~~~l~ll~~l~~~~-~~isp~l~~l~~~l~~ 701 (1049)
| -..++..+...|..+|+ |+. +=++-.++++..+-.+. ..-.+...++++.+..
T Consensus 171 p--~~E~e~~i~~~ikkvL~-DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~e 226 (556)
T PF05918_consen 171 P--QKEMEEFIVDEIKKVLQ-DVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEE 226 (556)
T ss_dssp ----HHHHHHHHHHHHHHCT-T--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHH
T ss_pred c--hHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHH
Confidence 1 14578889999999995 432 22244455555554332 1222345566665553
No 67
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.92 E-value=2.9 Score=49.58 Aligned_cols=81 Identities=15% Similarity=0.267 Sum_probs=70.9
Q ss_pred HHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccch
Q 001585 478 VQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL 557 (1049)
Q Consensus 478 ~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l 557 (1049)
.+.+..+|+.|+-|+|+..+.|+ ++.+.+|.+.+++|.+..||.+.+.-||-.|..|+-.+... .+.+-|-.
T Consensus 101 cna~RkDLQHPNEyiRG~TLRFL-----ckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~---~~~L~pDa 172 (948)
T KOG1058|consen 101 CNAYRKDLQHPNEYIRGSTLRFL-----CKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN---FEHLIPDA 172 (948)
T ss_pred HHHHhhhccCchHhhcchhhhhh-----hhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh---hhhhcCCh
Confidence 45566788889999999999999 55668899999999999999999999999999999998876 57888999
Q ss_pred HHHHHHHHH
Q 001585 558 PQLLDEFFK 566 (1049)
Q Consensus 558 ~~il~~L~~ 566 (1049)
|.++...+.
T Consensus 173 peLi~~fL~ 181 (948)
T KOG1058|consen 173 PELIESFLL 181 (948)
T ss_pred HHHHHHHHH
Confidence 999988764
No 68
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.92 E-value=0.25 Score=52.26 Aligned_cols=178 Identities=14% Similarity=0.208 Sum_probs=96.5
Q ss_pred CCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHH---HhhccccCCCCcchhHHHHHHHHHhhccccCCh--hHHHHHH
Q 001585 444 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLV---QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKAL 518 (1049)
Q Consensus 444 ~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~---~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~--~~~~~~~ 518 (1049)
.+|..|..++.-+..+..+-. .......+.+.+. ..+...+.+...-|...||.+++.++... .+. .+...++
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~-~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l-~~~~~~~~~~~l 96 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNA-PEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL-GSHFEPYADILL 96 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH-GGGGHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCC-ccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hHhHHHHHHHHH
Confidence 389999999999988877651 1112233434343 33444555666778899999999987532 121 4678899
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHH-HHHHHHHhhhhchh---hHHHHHHHHHHHcc---Ccc
Q 001585 519 HSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQL-LDEFFKLMNEVENE---DLVFTLETIVDKFG---EEM 591 (1049)
Q Consensus 519 ~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~i-l~~L~~ll~~~~~~---~l~~~l~~iv~~~~---~~i 591 (1049)
+.++..+.++...++..|..||..++.... +.+.+ +..+...++.-... .....+..++...+ ..+
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCS-------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS--------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCC-------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 999999999999999999999999999862 23344 33333334332221 34556666666666 233
Q ss_pred cccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhh
Q 001585 592 APYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESV 641 (1049)
Q Consensus 592 ~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~ 641 (1049)
.+. ..+..+.+.+.+... |+ ++-.+...-+++..+.+..
T Consensus 170 ~~~--~~~~~l~~~l~~~l~----D~-----~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 170 QKS--AFLKQLVKALVKLLS----DA-----DPEVREAARECLWALYSHF 208 (228)
T ss_dssp --H--HHHHHHHHHHHHHHT----SS------HHHHHHHHHHHHHHHHHH
T ss_pred ccc--chHHHHHHHHHHHCC----CC-----CHHHHHHHHHHHHHHHHHC
Confidence 321 122334444444443 32 2334445556666665554
No 69
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.88 E-value=0.19 Score=53.19 Aligned_cols=166 Identities=14% Similarity=0.201 Sum_probs=97.5
Q ss_pred ccCCHHHHHHHHHHHHHHhc-ccchHHHHHHHHH---HHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhH
Q 001585 398 DLYSPRTASMDFVSELVRKR-GKENLQKFIQFIV---GIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSEL 473 (1049)
Q Consensus 398 d~~s~R~aA~~ll~~L~~~~-~~~~~~~~~~~i~---~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~ 473 (1049)
..|+.|..|..-|..++... +....+.+++.+. ..+.....+. +-..--.|+..++.++..+... +...
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~----Rs~v~~~A~~~l~~l~~~l~~~--~~~~- 91 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL----RSKVSKTACQLLSDLARQLGSH--FEPY- 91 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-------HHHHHHHHHHHHHHHHGGG--GHHH-
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHhHh--HHHH-
Confidence 46889999999999998876 2333334444444 2222211111 3344566677888888877542 2222
Q ss_pred HHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHH-HHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-ccc
Q 001585 474 ERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKA-LHSVVSGLRDPELPVRVDSVFALRSFVEACR-DLN 551 (1049)
Q Consensus 474 ~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~-~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~-~~~ 551 (1049)
-..+...++.-+.++..++|.+|..++..+.... + ....+ .+.+...+.+.++.||..++..+..++..+. ...
T Consensus 92 ~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~--~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 92 ADILLPPLLKKLGDSKKFIREAANNALDAIIESC--S--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHC--C--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence 2333445555666788999999999998887632 2 23444 7777778899999999999999999998874 235
Q ss_pred ccccc--hHHHHHHHHHHhhhhchh
Q 001585 552 EIRPI--LPQLLDEFFKLMNEVENE 574 (1049)
Q Consensus 552 ~l~p~--l~~il~~L~~ll~~~~~~ 574 (1049)
.+... ++.++..+..++++.+.+
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~D~~~~ 192 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLSDADPE 192 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHTSS-HH
T ss_pred hhcccchHHHHHHHHHHHCCCCCHH
Confidence 55543 477888888888776544
No 70
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=4.9 Score=48.79 Aligned_cols=115 Identities=16% Similarity=0.174 Sum_probs=71.9
Q ss_pred HHHHHHHHHhcCCC---C--CCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHHc
Q 001585 514 FRKALHSVVSGLRD---P--ELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKF 587 (1049)
Q Consensus 514 ~~~~~~~ll~~L~d---~--~~~V~~~Aa~AL~~~~~~~~-~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~ 587 (1049)
....++.++...-. + ++-.--++...+..++.... .+..+-|+++-++++|- +.-.+......+.++.+..
T Consensus 502 ~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh---~sk~s~q~i~tl~tlC~~C 578 (982)
T KOG2022|consen 502 ESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLH---NSKESEQAISTLKTLCETC 578 (982)
T ss_pred hhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhc---CchHHHHHHHHHHHHHHhh
Confidence 34556666665532 1 22233345455555544322 56778888888877774 1112234555699999999
Q ss_pred cCcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhc
Q 001585 588 GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVS 642 (1049)
Q Consensus 588 ~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~ 642 (1049)
.+++.||+..++..+-..++.. + -++.....++.+|+-++..+.
T Consensus 579 ~~~L~py~d~~~a~~~e~l~~~--~---------~~~S~~~klm~sIGyvls~~~ 622 (982)
T KOG2022|consen 579 PESLDPYADQFSAVCYEVLNKS--N---------AKDSDRLKLMKSIGYVLSRLK 622 (982)
T ss_pred hhhCchHHHHHHHHHHHHhccc--c---------cCchHHHHHHHHHHHHHHhcc
Confidence 9999999999988776555441 1 123345577888888888875
No 71
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=6.9 Score=47.19 Aligned_cols=184 Identities=14% Similarity=0.162 Sum_probs=107.8
Q ss_pred hccccCCCCcchhHHHHHHHHHhhcc-------ccCChh---HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccc
Q 001585 481 VFPEFSSPVGHLRAKAAWVAGQYAHI-------NFSDQN---NFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDL 550 (1049)
Q Consensus 481 v~p~l~~~~~~lr~ra~~~l~~~~~~-------~f~~~~---~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~ 550 (1049)
++-.+.++.+.|-.=|..++-+.-.+ .|..++ +...++..++.++.-+...=..+-..|+-+.+.. ..
T Consensus 503 li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i--~~ 580 (960)
T KOG1992|consen 503 LIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISI--LQ 580 (960)
T ss_pred HHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHh--CH
Confidence 44455667778877777788776332 233322 3355566666666644445567888899999887 47
Q ss_pred cccccchHHHHHHHHHHhhhhch----h-h---HHHHHHHHHHHccCccccc-HHHHHHHHHHHHHHHHhcccCCCCCCC
Q 001585 551 NEIRPILPQLLDEFFKLMNEVEN----E-D---LVFTLETIVDKFGEEMAPY-ALGLCQNLAAAFWRCMNTAEADEDADD 621 (1049)
Q Consensus 551 ~~l~p~l~~il~~L~~ll~~~~~----~-~---l~~~l~~iv~~~~~~i~p~-~~~l~~~L~~~~~~~~~~~~~d~~~~~ 621 (1049)
+.+.|+.+.++.+|.+++.++.. . . +..++..++...++. .|. ...+...|.+.|..+.++
T Consensus 581 ~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~-~~~~vs~~e~aL~p~fq~Il~e--------- 650 (960)
T KOG1992|consen 581 SAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKA-NPSAVSSLEEALFPVFQTILSE--------- 650 (960)
T ss_pred HhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHHHHH---------
Confidence 88889999999999988865321 1 2 344444445544333 332 234556666666666653
Q ss_pred hhHHHHHHHHHHHHHHHHhhcC-ChHHHHHHHhhHHHHHHHHcccchh---hHHHHHHHHHHHHhh
Q 001585 622 PGALAAVGCLRAISTILESVSR-LPHLFVQIEPTLLPIMRRMLTTDGQ---EVFEEVLEIVSYMTF 683 (1049)
Q Consensus 622 ~~~~~~~~~le~i~~ll~~~~~-~~~~~~~l~~~~~p~i~~~l~~~~~---~~~~~~l~ll~~l~~ 683 (1049)
|-.-+.-+++..++.++..-+. .|+ ...|++..+|++... .-++....++.++++
T Consensus 651 DI~EfiPYvfQlla~lve~~~~~ip~-------~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk 709 (960)
T KOG1992|consen 651 DIQEFIPYVFQLLAVLVEHSSGTIPD-------SYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLK 709 (960)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCch-------hHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHh
Confidence 2333556788888888877643 333 334444444443221 234444455555544
No 72
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.67 E-value=5.8 Score=46.00 Aligned_cols=154 Identities=14% Similarity=0.177 Sum_probs=87.6
Q ss_pred HHHHHhhccccCCCCcchhHHHHHHHHHhhccc--cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccc
Q 001585 475 RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN--FSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNE 552 (1049)
Q Consensus 475 ~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~--f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~ 552 (1049)
+.+.+.++..|+++.|-+|-||..+.|.++.+. +-..+.+..+=..+...|....+-|--.-..|+..+.... .-..
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~-~~~~ 681 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVH-RFRS 681 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhh-cccc
Confidence 345567888899999999999999999987642 1112445555566677776544444444444555544433 2345
Q ss_pred cccchHHHHHHHHHHhhhhchhh---HHHHHHHHHHHccCccccc-HHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHH
Q 001585 553 IRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMAPY-ALGLCQNLAAAFWRCMNTAEADEDADDPGALAAV 628 (1049)
Q Consensus 553 l~p~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~~~i~p~-~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~ 628 (1049)
++|=+.+|+..|..++..-.... -...+..|.....+.+.|- -..||-.|++.+. -|+ +.+ +-
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lk-s~n-----------Kei-RR 748 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLK-SWN-----------KEI-RR 748 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH-Hhh-----------HHH-HH
Confidence 66777777777877776543322 2334455555555544431 1234444443322 232 222 22
Q ss_pred HHHHHHHHHHHhhc
Q 001585 629 GCLRAISTILESVS 642 (1049)
Q Consensus 629 ~~le~i~~ll~~~~ 642 (1049)
...++++-|-++++
T Consensus 749 ~A~~tfG~Is~aiG 762 (975)
T COG5181 749 NATETFGCISRAIG 762 (975)
T ss_pred hhhhhhhhHHhhcC
Confidence 45566666666665
No 73
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.65 E-value=0.49 Score=50.76 Aligned_cols=146 Identities=14% Similarity=0.126 Sum_probs=86.3
Q ss_pred hhccccCCCCcchhHHHHHHHHHhhcccc---CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccc
Q 001585 480 HVFPEFSSPVGHLRAKAAWVAGQYAHINF---SDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPI 556 (1049)
Q Consensus 480 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~f---~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~ 556 (1049)
.+-|.|++..+..|++|..+++...+-.. -+.+....++......|.|.. .-..|..++..++.... .-...
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~--~~~~~l~gl~~L~~~~~---~~~~~ 77 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA--CVQPALKGLLALVKMKN---FSPES 77 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh--hHHHHHHHHHHHHhCcC---CChhh
Confidence 35567888999999999999998644221 123456777788888886643 23334777777775432 22233
Q ss_pred hHHHHHHHHHHhhh-----hchhhHHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHH
Q 001585 557 LPQLLDEFFKLMNE-----VENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCL 631 (1049)
Q Consensus 557 l~~il~~L~~ll~~-----~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l 631 (1049)
...+++.++.-..- ..--....++..+++.+.+.+.....+.+..++ +.++ ++.|| +.+ ..++
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i----~~~~-gEkDP-----RnL--l~~F 145 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFI----QLID-GEKDP-----RNL--LLSF 145 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHH----HHhc-cCCCH-----HHH--HHHH
Confidence 55666666643321 111136778888888887777555555554443 4343 44455 322 2456
Q ss_pred HHHHHHHHhhc
Q 001585 632 RAISTILESVS 642 (1049)
Q Consensus 632 e~i~~ll~~~~ 642 (1049)
+.+..++....
T Consensus 146 ~l~~~i~~~~~ 156 (262)
T PF14500_consen 146 KLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHhcc
Confidence 66666665554
No 74
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.57 E-value=0.43 Score=59.09 Aligned_cols=234 Identities=16% Similarity=0.234 Sum_probs=130.1
Q ss_pred CHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHH
Q 001585 401 SPRTASMDFVSELVRKRGK-ENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 479 (1049)
Q Consensus 401 s~R~aA~~ll~~L~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~ 479 (1049)
.-|.+|..+|..|+..... ..+.-+++|+..++... ....|-+|+..+..+-.-..+..+.. ...|..
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds--------~a~Vra~Al~Tlt~~L~~Vr~~~~~d---aniF~e 506 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDS--------EADVRATALETLTELLALVRDIPPSD---ANIFPE 506 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCc--------hHHHHHHHHHHHHHHHhhccCCCccc---chhhHh
Confidence 3577889999999887654 45677889988887652 45677788877776665555443321 234567
Q ss_pred hhccccC----C-CCcchhHHHHHHHHHhhccccCChhHHHHHHHH-----HHhcCCCCCCc--hHHHHHHHHHHHHHhc
Q 001585 480 HVFPEFS----S-PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHS-----VVSGLRDPELP--VRVDSVFALRSFVEAC 547 (1049)
Q Consensus 480 ~v~p~l~----~-~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~-----ll~~L~d~~~~--V~~~Aa~AL~~~~~~~ 547 (1049)
+++|.|+ + ...++|..-.-++++++..-.+ +...-+. +.+.++++..+ -...-..||...
T Consensus 507 YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r----Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~---- 578 (1431)
T KOG1240|consen 507 YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR----FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHT---- 578 (1431)
T ss_pred hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH----HHHHHHHHHhcccccCcccccccccccchHHHHHHHH----
Confidence 8888776 3 4568998888889988763211 1111111 12222221000 011111111111
Q ss_pred ccccccccchHHHHHHHHHHhhhhch---hhHHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhH
Q 001585 548 RDLNEIRPILPQLLDEFFKLMNEVEN---EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGA 624 (1049)
Q Consensus 548 ~~~~~l~p~l~~il~~L~~ll~~~~~---~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~ 624 (1049)
+.+.+.. ++...+. ..++..|--+...|+.+=.. .-|..+|+ +|++ |. ..
T Consensus 579 ---------V~~~v~s---Llsd~~~~Vkr~Lle~i~~LC~FFGk~ksN--D~iLshLi-TfLN-------Dk-----Dw 631 (1431)
T KOG1240|consen 579 ---------VEQMVSS---LLSDSPPIVKRALLESIIPLCVFFGKEKSN--DVILSHLI-TFLN-------DK-----DW 631 (1431)
T ss_pred ---------HHHHHHH---HHcCCchHHHHHHHHHHHHHHHHhhhcccc--cchHHHHH-HHhc-------Cc-----cH
Confidence 1111111 1211110 11222222233344433111 13445665 3432 22 34
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccchhhHHHHHHHHHHHHhhcC
Q 001585 625 LAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS 685 (1049)
Q Consensus 625 ~~~~~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~ 685 (1049)
..+...++.|..+.-.++.. ..++.++|++...|+....-.+..+++.+..|++..
T Consensus 632 ~LR~aFfdsI~gvsi~VG~r-----s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ 687 (1431)
T KOG1240|consen 632 RLRGAFFDSIVGVSIFVGWR-----SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG 687 (1431)
T ss_pred HHHHHHHhhccceEEEEeee-----eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc
Confidence 56778899888776666532 367899999999997555566799999999998754
No 75
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.41 E-value=1.2 Score=55.38 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=46.3
Q ss_pred cchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001585 490 GHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 547 (1049)
Q Consensus 490 ~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~ 547 (1049)
+-.|..|+.++..++... .++..+..++|.+++++.|+...||..|..+|..++...
T Consensus 437 ~~tK~~ALeLl~~lS~~i-~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~V 493 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYI-DDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALV 493 (1431)
T ss_pred chhHHHHHHHHHHHhhhc-chHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhc
Confidence 345667777777776643 345678999999999999999999999999999998765
No 76
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.06 E-value=0.017 Score=45.48 Aligned_cols=55 Identities=24% Similarity=0.367 Sum_probs=38.6
Q ss_pred chhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHh
Q 001585 446 YRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQY 503 (1049)
Q Consensus 446 w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~ 503 (1049)
|+.|.+|+.++|.++....+. ... +.+-+...+.+.++++++-+|..|||.+|++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~--~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPEL--LQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHH--HHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHH--HHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 788999999999877554321 111 2222334566677888889999999999863
No 77
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.91 E-value=12 Score=45.16 Aligned_cols=111 Identities=15% Similarity=0.178 Sum_probs=72.3
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhc
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 524 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~ 524 (1049)
|--..-.||.++|.++..=. ..+..+++|. .++.++|++|..|..|.-+|-. +.|+..+.+++..-+.
T Consensus 120 nq~vVglAL~alg~i~s~Em-ardlapeVe~--------Ll~~~~~~irKKA~Lca~r~ir---K~P~l~e~f~~~~~~l 187 (866)
T KOG1062|consen 120 NQYVVGLALCALGNICSPEM-ARDLAPEVER--------LLQHRDPYIRKKAALCAVRFIR---KVPDLVEHFVIAFRKL 187 (866)
T ss_pred CeeehHHHHHHhhccCCHHH-hHHhhHHHHH--------HHhCCCHHHHHHHHHHHHHHHH---cCchHHHHhhHHHHHH
Confidence 44556677777777764311 1123334444 3456899999999999988753 4667788888888999
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhh
Q 001585 525 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE 570 (1049)
Q Consensus 525 L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~ 570 (1049)
|.+.+..|-..+..-+..+|... .+. ..|...++..|+..+++
T Consensus 188 L~ek~hGVL~~~l~l~~e~c~~~--~~~-l~~fr~l~~~lV~iLk~ 230 (866)
T KOG1062|consen 188 LCEKHHGVLIAGLHLITELCKIS--PDA-LSYFRDLVPSLVKILKQ 230 (866)
T ss_pred HhhcCCceeeeHHHHHHHHHhcC--HHH-HHHHHHHHHHHHHHHHH
Confidence 99888888887777777777763 222 22333355555555543
No 78
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.90 E-value=2.7 Score=49.82 Aligned_cols=150 Identities=13% Similarity=0.172 Sum_probs=84.6
Q ss_pred cCHHHHHhHhcCcccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHh
Q 001585 383 EDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDK 462 (1049)
Q Consensus 383 ~Dp~efi~~~~d~~~d~~s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~ 462 (1049)
.-|+||||- . .|+-||+-...+.++++++.+.+.|..- +.-.|.-|+++++.|-..
T Consensus 109 QHPNEyiRG--------~--------TLRFLckLkE~ELlepl~p~IracleHr--------hsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 109 QHPNEYIRG--------S--------TLRFLCKLKEPELLEPLMPSIRACLEHR--------HSYVRRNAILAIFSIYKN 164 (948)
T ss_pred cCchHhhcc--------h--------hhhhhhhcCcHHHhhhhHHHHHHHHhCc--------chhhhhhhheeehhHHhh
Confidence 359999873 2 3445666666789999999999998652 334455566677766543
Q ss_pred hhcCCCchhhHHHHHHHhhccccCCC---Cc------chhHHHHHHHHH-hhcc------------------ccCChhHH
Q 001585 463 LKQTEPYKSELERMLVQHVFPEFSSP---VG------HLRAKAAWVAGQ-YAHI------------------NFSDQNNF 514 (1049)
Q Consensus 463 l~~~~~~~~~~~~~l~~~v~p~l~~~---~~------~lr~ra~~~l~~-~~~~------------------~f~~~~~~ 514 (1049)
... +.++...++..++..+.... +. .=+.||...++. +..+ ...+|..-
T Consensus 165 ~~~---L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~ 241 (948)
T KOG1058|consen 165 FEH---LIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK 241 (948)
T ss_pred hhh---hcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh
Confidence 211 11223333333333222110 11 113344333322 1111 01234455
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHH
Q 001585 515 RKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLD 562 (1049)
Q Consensus 515 ~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~ 562 (1049)
...+..+.+.|++++..|+..||.+|.++... +..+++-...+++
T Consensus 242 ~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~---p~alk~Aa~~~i~ 286 (948)
T KOG1058|consen 242 ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND---PTALKAAASTYID 286 (948)
T ss_pred hHHHHHHHHHHhcCCchhhhhhcceEEEccCC---HHHHHHHHHHHHH
Confidence 66778888889888889999999999887765 4455554444433
No 79
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.51 E-value=0.036 Score=37.71 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=25.8
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 001585 517 ALHSVVSGLRDPELPVRVDSVFALRSFVEA 546 (1049)
Q Consensus 517 ~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~ 546 (1049)
++|.++++++|++..||..|+.||..+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999998875
No 80
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.49 E-value=12 Score=43.40 Aligned_cols=280 Identities=18% Similarity=0.246 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHhcc-cCCCCc---CCC-CchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHH
Q 001585 405 ASMDFVSELVRKRGKENLQKFIQFIVGIFKR-YDETPV---EYK-PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 479 (1049)
Q Consensus 405 aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~-~~~~~~---~~~-~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~ 479 (1049)
.+.+++..++...+.+--+.++.-+...+-. ....|- ... .+..+.... ++.++-.++.+...+ ++...++..
T Consensus 116 ~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~il~~l~~~~~~-~~~~~ll~~ 193 (415)
T PF12460_consen 116 LLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVI-LFSAILCSLRKDVSL-PDLEELLQS 193 (415)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHH-HHHHHHHcCCcccCc-cCHHHHHHH
Confidence 4556677777766543333334433333321 111111 101 123333333 333333344432221 245554443
Q ss_pred hhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcC-CCCCCchHHHHHHHHHHHHHhcccccccccchH
Q 001585 480 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL-RDPELPVRVDSVFALRSFVEACRDLNEIRPILP 558 (1049)
Q Consensus 480 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L-~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~ 558 (1049)
.+-=..+...+..|..++.+++-+.. +|.+.+.+..++......+ .......+..+...+--+....-.+ --|...
T Consensus 194 l~~~~~~~~~~~~~~~~~~~la~LvN-K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R--~~~~~~ 270 (415)
T PF12460_consen 194 LLNLALSSEDEFSRLAALQLLASLVN-KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMR--GHPLAT 270 (415)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHc-CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHc--CCchHH
Confidence 33222345569999999999988876 4555566778888887777 3333334444433332222221001 126777
Q ss_pred HHHHHHHHHhhhhchh-hHHHHHHHHHHH--------ccCcccc-cHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHH
Q 001585 559 QLLDEFFKLMNEVENE-DLVFTLETIVDK--------FGEEMAP-YALGLCQNLAAAFWRCMNTAEADEDADDPGALAAV 628 (1049)
Q Consensus 559 ~il~~L~~ll~~~~~~-~l~~~l~~iv~~--------~~~~i~p-~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~ 628 (1049)
.+++.|+.++...+.. .....++-++.- ....+.+ |-..+...+.+.+.+..++..+ . ...
T Consensus 271 ~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~-------~--~k~ 341 (415)
T PF12460_consen 271 ELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD-------E--IKS 341 (415)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh-------h--hHH
Confidence 8888888888763322 233333333321 1233444 2334555555555555443321 1 344
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccchhhHHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHH
Q 001585 629 GCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP-TISLEMWSLWPLMM 700 (1049)
Q Consensus 629 ~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~-~isp~l~~l~~~l~ 700 (1049)
.++.+++.+++.+. ..++..--+.++|++-.+|+.+..+....+++.+..++...+ .+++.+-.+.|.++
T Consensus 342 ~yL~ALs~ll~~vP--~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL 412 (415)
T PF12460_consen 342 NYLTALSHLLKNVP--KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLL 412 (415)
T ss_pred HHHHHHHHHHhhCC--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 67889999999874 344444557789999999988888888999999999886543 23444445555544
No 81
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.32 E-value=23 Score=45.90 Aligned_cols=137 Identities=21% Similarity=0.259 Sum_probs=85.8
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhhCC-CCchhHHHHHHHHhhhh--hH-HHHHHHHHHHHHhcccCCCCccccccc
Q 001585 92 HILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ--QV-YGALFVLRILSRKYEYQPTDSTSMKGY 167 (1049)
Q Consensus 92 ~ll~~L~~~~~~ir~~l~~~i~~Ia~~d~P-~~Wp~Ll~~l~~~l~s~--~~-~~~L~~L~~i~k~~~~~~t~~~~~~~~ 167 (1049)
.|+..|.++...+|+..-.|++.|+..|=- -.=|+....+-+.+.++ .| .+|+..+..++-.++
T Consensus 820 ~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~------------ 887 (1692)
T KOG1020|consen 820 LILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIP------------ 887 (1692)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccH------------
Confidence 455666778889999999999999998822 45688888888877666 44 566666655443221
Q ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHhhhccCCcccCChhhHHHHHHHHHH
Q 001585 168 RIYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLN 247 (1049)
Q Consensus 168 r~~~~~~~~~~~~l~~i~~~~~p~Ll~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~lp~~~~~~~~l~~~~~~~~~ 247 (1049)
+.+.++ +.++... ..+....+|+.++||.+.+. .+.| .|......+..
T Consensus 888 ---------------e~~~qy-------Y~~i~er--IlDtgvsVRKRvIKIlrdic-~e~p-------df~~i~~~cak 935 (1692)
T KOG1020|consen 888 ---------------ELIFQY-------YDQIIER--ILDTGVSVRKRVIKILRDIC-EETP-------DFSKIVDMCAK 935 (1692)
T ss_pred ---------------HHHHHH-------HHHHHhh--cCCCchhHHHHHHHHHHHHH-HhCC-------ChhhHHHHHHH
Confidence 122222 2222221 11223678999999999874 2333 45556667777
Q ss_pred HhcCCCCCCCCCCChhhhhhcchHHHHHHHHHHHHHHHH
Q 001585 248 VLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYT 286 (1049)
Q Consensus 248 ~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~ 286 (1049)
+|.+- .|+++ .++|-+++++..+.-
T Consensus 936 mlrRv-------~DEEg-------~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 936 MLRRV-------NDEEG-------NIKKLVRETFLKLWF 960 (1692)
T ss_pred HHHHh-------ccchh-------HHHHHHHHHHHHHhc
Confidence 77762 23332 377888888776653
No 82
>PRK09687 putative lyase; Provisional
Probab=94.21 E-value=0.3 Score=53.10 Aligned_cols=151 Identities=19% Similarity=0.193 Sum_probs=91.4
Q ss_pred CCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHH
Q 001585 400 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 479 (1049)
Q Consensus 400 ~s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~ 479 (1049)
...|..|...|..|..... .....++.+..++.+ .++|..|.++..++|.+...-.. . ... +..
T Consensus 68 ~~vR~~A~~aLg~lg~~~~--~~~~a~~~L~~l~~~-------D~d~~VR~~A~~aLG~~~~~~~~---~---~~~-a~~ 131 (280)
T PRK09687 68 PIERDIGADILSQLGMAKR--CQDNVFNILNNLALE-------DKSACVRASAINATGHRCKKNPL---Y---SPK-IVE 131 (280)
T ss_pred HHHHHHHHHHHHhcCCCcc--chHHHHHHHHHHHhc-------CCCHHHHHHHHHHHhcccccccc---c---chH-HHH
Confidence 3578888887777643221 112234444444222 12788899999999887432110 0 111 122
Q ss_pred hhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHH
Q 001585 480 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQ 559 (1049)
Q Consensus 480 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~ 559 (1049)
.+.+.+.++++.+|..|.+.+|++. + ...++.++..|.|++.-||..|+.||..+-. .-+.
T Consensus 132 ~l~~~~~D~~~~VR~~a~~aLg~~~-----~----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~----------~~~~ 192 (280)
T PRK09687 132 QSQITAFDKSTNVRFAVAFALSVIN-----D----EAAIPLLINLLKDPNGDVRNWAAFALNSNKY----------DNPD 192 (280)
T ss_pred HHHHHhhCCCHHHHHHHHHHHhccC-----C----HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC----------CCHH
Confidence 3444566788999999999997653 2 3467888899999888899999999998721 1234
Q ss_pred HHHHHHHHhhhhchhhHHHHHHHHHH
Q 001585 560 LLDEFFKLMNEVENEDLVFTLETIVD 585 (1049)
Q Consensus 560 il~~L~~ll~~~~~~~l~~~l~~iv~ 585 (1049)
+++.|..+++..+.+.-..++..+..
T Consensus 193 ~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 193 IREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 55566666655443333334444433
No 83
>PRK09687 putative lyase; Provisional
Probab=93.99 E-value=0.24 Score=53.92 Aligned_cols=115 Identities=14% Similarity=0.158 Sum_probs=77.8
Q ss_pred CCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHH
Q 001585 400 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 479 (1049)
Q Consensus 400 ~s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~ 479 (1049)
+.+|.+|...|..++..-... .+.++..+...+.. .+|..|.++..++|.+... . -..
T Consensus 105 ~~VR~~A~~aLG~~~~~~~~~-~~~a~~~l~~~~~D--------~~~~VR~~a~~aLg~~~~~---------~----ai~ 162 (280)
T PRK09687 105 ACVRASAINATGHRCKKNPLY-SPKIVEQSQITAFD--------KSTNVRFAVAFALSVINDE---------A----AIP 162 (280)
T ss_pred HHHHHHHHHHHhccccccccc-chHHHHHHHHHhhC--------CCHHHHHHHHHHHhccCCH---------H----HHH
Confidence 457888888887775432111 11222222222221 2799999999999865421 1 113
Q ss_pred hhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 001585 480 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSF 543 (1049)
Q Consensus 480 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~ 543 (1049)
.+++.+.++.+.+|..|.+.+|++.. .+ ..+.+.++..|.|.+..||..|+.+|..+
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~~~---~~----~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSNKY---DN----PDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcCCC---CC----HHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 45556788899999999999999732 22 35677888889999999999999999873
No 84
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.77 E-value=22 Score=43.62 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=69.4
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHH-HHHHHh
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKA-LHSVVS 523 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~-~~~ll~ 523 (1049)
|...|-.|++.++.+-.. .+-..+..-|...++++++++|..|..++..+-.. +++..... .-.+.+
T Consensus 105 N~~iR~~AlR~ls~l~~~---------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l---d~~l~~~~g~~~~l~ 172 (757)
T COG5096 105 NEEIRGFALRTLSLLRVK---------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL---DKDLYHELGLIDILK 172 (757)
T ss_pred CHHHHHHHHHHHHhcChH---------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc---CHhhhhcccHHHHHH
Confidence 778899999999876542 12222334455667899999999999999987543 33444444 334444
Q ss_pred -cCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHH
Q 001585 524 -GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFF 565 (1049)
Q Consensus 524 -~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~ 565 (1049)
.+.|+++.|...|..+|..+.+. ...+|...+...+-
T Consensus 173 ~l~~D~dP~Vi~nAl~sl~~i~~e-----~a~~~~~~~~~~i~ 210 (757)
T COG5096 173 ELVADSDPIVIANALASLAEIDPE-----LAHGYSLEVILRIP 210 (757)
T ss_pred HHhhCCCchHHHHHHHHHHHhchh-----hhhhHHHHHHHHhh
Confidence 45699999999999999887765 33445444444333
No 85
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.50 E-value=2.9 Score=42.21 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=58.1
Q ss_pred CcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHh
Q 001585 489 VGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLM 568 (1049)
Q Consensus 489 ~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll 568 (1049)
+|.+|..++.++|-++- .| +.......+.+..+|.|+++.||..|..+|..++... ....-+.++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~-r~--~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-----~ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCI-RY--PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED-----MIKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHH-hC--cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-----ceeehhhhhHHHHHHH
Confidence 57899999999998863 32 3578889999999999999999999999999999753 2222345556666666
Q ss_pred hhhc
Q 001585 569 NEVE 572 (1049)
Q Consensus 569 ~~~~ 572 (1049)
.+.+
T Consensus 73 ~D~~ 76 (178)
T PF12717_consen 73 VDEN 76 (178)
T ss_pred cCCC
Confidence 5543
No 86
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=93.49 E-value=0.058 Score=50.14 Aligned_cols=88 Identities=16% Similarity=0.233 Sum_probs=59.8
Q ss_pred hccccCCCCcchhHHHHHHHHHhhccccCCh---hHHH-HHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccccccc-
Q 001585 481 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ---NNFR-KALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRP- 555 (1049)
Q Consensus 481 v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~---~~~~-~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p- 555 (1049)
++..+.++++.+|..++|+++.++... ++ .... .+++.++.+|.+++..|+..|+.||.+++.... ....-
T Consensus 12 l~~~l~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~ 87 (120)
T cd00020 12 LVSLLSSSDENVQREAAWALSNLSAGN--NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE--DNKLIV 87 (120)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhcCC--HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH--HHHHHH
Confidence 334456667899999999999987531 11 2233 778899999999899999999999999998752 11111
Q ss_pred chHHHHHHHHHHhhhhc
Q 001585 556 ILPQLLDEFFKLMNEVE 572 (1049)
Q Consensus 556 ~l~~il~~L~~ll~~~~ 572 (1049)
.-..++..+.++++..+
T Consensus 88 ~~~g~l~~l~~~l~~~~ 104 (120)
T cd00020 88 LEAGGVPKLVNLLDSSN 104 (120)
T ss_pred HHCCChHHHHHHHhcCC
Confidence 11234555666665543
No 87
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=93.37 E-value=0.75 Score=49.09 Aligned_cols=98 Identities=16% Similarity=0.217 Sum_probs=67.8
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCch---hhHHHHHHHhhccccCCC--CcchhHHHHHHHHHhhccccCCh--hHHHHH
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEPYK---SELERMLVQHVFPEFSSP--VGHLRAKAAWVAGQYAHINFSDQ--NNFRKA 517 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~~~---~~~~~~l~~~v~p~l~~~--~~~lr~ra~~~l~~~~~~~f~~~--~~~~~~ 517 (1049)
+--.+|-+..++|.++..-....+|. .-++++ +..+.++ |--+-+.+-|+++.++.-+=.+| +...+.
T Consensus 170 ~~~V~eQavWALGNiAGDS~~~RD~vL~~galepl-----L~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqa 244 (526)
T COG5064 170 EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPL-----LGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQA 244 (526)
T ss_pred hHHHHHHHHHHhccccCCchhHHHHHHhcCchHHH-----HHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHH
Confidence 44679999999999986543222221 112332 2233333 44566779999999987541122 567899
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001585 518 LHSVVSGLRDPELPVRVDSVFALRSFVEAC 547 (1049)
Q Consensus 518 ~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~ 547 (1049)
+|.+.+++...++-|-+-||+|+..+.+..
T Consensus 245 lpiL~KLiys~D~evlvDA~WAiSYlsDg~ 274 (526)
T COG5064 245 LPILAKLIYSRDPEVLVDACWAISYLSDGP 274 (526)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHhccCc
Confidence 999999998888889999999999988775
No 88
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.36 E-value=7.2 Score=43.13 Aligned_cols=205 Identities=14% Similarity=0.128 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHhhcCCchhhhhchhhHHHHHHHHhhhccccChhhHhhhhcCHHHHHhHhcCcccccCCHHHHHHHHHH
Q 001585 332 DRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVS 411 (1049)
Q Consensus 332 ~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aA~~ll~ 411 (1049)
.+.+..+++-+..++........+..+..+|+..+. ..+.-... .-+..|..++.
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~-k~lkkg~~------------------------~E~~lA~~~l~ 111 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALL-KSLKKGKS------------------------EEQALAARALA 111 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHhccCCH------------------------HHHHHHHHHHH
Confidence 345566666666665555445555555555555432 22211000 11334555666
Q ss_pred HHHHhcc-----cchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcC-CCch---hhHHHHHHHhhc
Q 001585 412 ELVRKRG-----KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQT-EPYK---SELERMLVQHVF 482 (1049)
Q Consensus 412 ~L~~~~~-----~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~-~~~~---~~~~~~l~~~v~ 482 (1049)
-++-..| ..++..+.+.+.+.+.... ...+.|-+++.++|.+.-..... ..+. ..++.+|.. ..
T Consensus 112 Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s------~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~-~~ 184 (309)
T PF05004_consen 112 LLALTLGAGEDSEEIFEELKPVLKRILTDSS------ASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLL-SI 184 (309)
T ss_pred HHhhhcCCCccHHHHHHHHHHHHHHHHhCCc------cchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH-Hh
Confidence 6655543 3455556666666665421 14567888888888877654321 1121 223322221 12
Q ss_pred cccCC--------CCcchhHHHHHHHHHhhccccCC--hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-c-c
Q 001585 483 PEFSS--------PVGHLRAKAAWVAGQYAHINFSD--QNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR-D-L 550 (1049)
Q Consensus 483 p~l~~--------~~~~lr~ra~~~l~~~~~~~f~~--~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~-~-~ 550 (1049)
+.... +.+-+.+.|+..-|-........ ...+...++.+...|++++.-||++|..||.-+.+... . .
T Consensus 185 ~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~ 264 (309)
T PF05004_consen 185 LKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEE 264 (309)
T ss_pred cCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 22211 23567776655544444322110 14567788999999999999999999999999887653 1 1
Q ss_pred cccccchHHHHHHHHHHh
Q 001585 551 NEIRPILPQLLDEFFKLM 568 (1049)
Q Consensus 551 ~~l~p~l~~il~~L~~ll 568 (1049)
+...+..+.+++.+-.|.
T Consensus 265 ~~~~~~~~~l~~~l~~La 282 (309)
T PF05004_consen 265 DFLYEDMEELLEQLRELA 282 (309)
T ss_pred cccccCHHHHHHHHHHHH
Confidence 223344444444444443
No 89
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=93.24 E-value=0.15 Score=44.45 Aligned_cols=75 Identities=23% Similarity=0.214 Sum_probs=55.2
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhc
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 524 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~ 524 (1049)
+|..|..++.++|.+.. ....+ .+...+++++|.+|..|++.+|++.+ ...++.+...
T Consensus 13 ~~~vr~~a~~~L~~~~~---------~~~~~----~L~~~l~d~~~~vr~~a~~aL~~i~~---------~~~~~~L~~~ 70 (88)
T PF13646_consen 13 DPQVRAEAARALGELGD---------PEAIP----ALIELLKDEDPMVRRAAARALGRIGD---------PEAIPALIKL 70 (88)
T ss_dssp SHHHHHHHHHHHHCCTH---------HHHHH----HHHHHHTSSSHHHHHHHHHHHHCCHH---------HHTHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCC---------HhHHH----HHHHHHcCCCHHHHHHHHHHHHHhCC---------HHHHHHHHHH
Confidence 78999999999983321 22333 34445588999999999999998742 4467778888
Q ss_pred CCC-CCCchHHHHHHHHH
Q 001585 525 LRD-PELPVRVDSVFALR 541 (1049)
Q Consensus 525 L~d-~~~~V~~~Aa~AL~ 541 (1049)
+.+ .+..||..|+.||.
T Consensus 71 l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 71 LQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTC-SSHHHHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHhhcC
Confidence 875 56678999999874
No 90
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=93.17 E-value=9.6 Score=41.61 Aligned_cols=103 Identities=18% Similarity=0.284 Sum_probs=66.4
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCC---------------------------------Ccc
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSP---------------------------------VGH 491 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~---------------------------------~~~ 491 (1049)
.|...+++-.+-..+.............++.++..++.|.|... ++.
T Consensus 15 ~Wtt~~s~~ia~~il~~~~~~~~~~~~~~~~~L~~~lrPlf~k~~~~~~t~~gr~~l~P~~~~~~~~~~~~~~~WK~~~~ 94 (282)
T PF10521_consen 15 PWTTEESAQIATSILEQFLSLSESPESIIERILIDTLRPLFSKSKNPRITSSGRKGLRPKLGFSFDDDELQRQPWKSNPG 94 (282)
T ss_pred CCccHHHHHHHHHHHHHhhccccCcHHHHHHHHHHHHhHHhcCCCCcccccccccccCCCCcccccccccccCCcccCCc
Confidence 67777666666555544332122223456667777777776522 122
Q ss_pred hh-HHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc
Q 001585 492 LR-AKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR 548 (1049)
Q Consensus 492 lr-~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~ 548 (1049)
++ ..-+|++.+-.+... =.+++.-++|.++..++|.+..+|..+|.+|..|+....
T Consensus 95 ~~~~~l~w~v~~~~~~~~-i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~ 151 (282)
T PF10521_consen 95 LASHVLSWIVLSQLDRPW-ISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVP 151 (282)
T ss_pred ccHHHHHHHHHhcCCcch-HHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCC
Confidence 33 345788862222110 015788899999999999999999999999999999864
No 91
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.82 E-value=28 Score=42.09 Aligned_cols=63 Identities=17% Similarity=0.114 Sum_probs=48.1
Q ss_pred hhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001585 480 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 547 (1049)
Q Consensus 480 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~ 547 (1049)
.+...|.+|++.+|+.|+.+++-+. =+-...-++-++-.+..|+.+-||-.||.||..+-+-.
T Consensus 112 tfQk~L~DpN~LiRasALRvlSsIR-----vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd 174 (968)
T KOG1060|consen 112 TFQKALKDPNQLIRASALRVLSSIR-----VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD 174 (968)
T ss_pred HHHhhhcCCcHHHHHHHHHHHHhcc-----hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC
Confidence 4445678999999999999886542 22234455666667778999999999999999988764
No 92
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=92.56 E-value=1.9 Score=45.91 Aligned_cols=84 Identities=21% Similarity=0.256 Sum_probs=64.9
Q ss_pred ccccC-CCCcchhHHHHHHHHHhhccccCChhHH--HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchH
Q 001585 482 FPEFS-SPVGHLRAKAAWVAGQYAHINFSDQNNF--RKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILP 558 (1049)
Q Consensus 482 ~p~l~-~~~~~lr~ra~~~l~~~~~~~f~~~~~~--~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~ 558 (1049)
+-.|. +..|+++.+|+..+|..+...|. ++.. ...++.+.+.|.++++.||..|..|+.++....+....++-|++
T Consensus 18 l~lL~~t~dp~i~e~al~al~n~aaf~~n-q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~ 96 (254)
T PF04826_consen 18 LCLLESTEDPFIQEKALIALGNSAAFPFN-QDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIP 96 (254)
T ss_pred HHHHhcCCChHHHHHHHHHHHhhccChhH-HHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 33455 46899999999999998765442 2222 34688889999999999999999999999877666677888888
Q ss_pred HHHHHHHH
Q 001585 559 QLLDEFFK 566 (1049)
Q Consensus 559 ~il~~L~~ 566 (1049)
.+++....
T Consensus 97 ~Vc~~~~s 104 (254)
T PF04826_consen 97 QVCEETVS 104 (254)
T ss_pred HHHHHHhc
Confidence 88776654
No 93
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.37 E-value=3.2 Score=41.18 Aligned_cols=98 Identities=19% Similarity=0.306 Sum_probs=66.4
Q ss_pred CcccCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHh
Q 001585 229 PKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKN 308 (1049)
Q Consensus 229 p~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~ 308 (1049)
++.+. ++-..|+..++.+|+.+-| ..+++.++..+.+++.+-+. +..+...+..+
T Consensus 58 ~e~l~--~~~~~W~~~Ll~~L~~~~~----------------~~~~~~ai~~L~~l~~~~~~-------~p~l~Rei~tp 112 (165)
T PF08167_consen 58 WEILL--SHGSQWLRALLSILEKPDP----------------PSVLEAAIITLTRLFDLIRG-------KPTLTREIATP 112 (165)
T ss_pred HHHHH--HHHHHHHHHHHHHHcCCCC----------------HHHHHHHHHHHHHHHHHhcC-------CCchHHHHhhc
Confidence 44454 6678999999999987422 35778899999999987422 22344445677
Q ss_pred hHHHHHHHHHHHHHHhhCCcccCHHHHHHHHHHHHhhcCCchhhhhchhhHHH
Q 001585 309 YAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDV 361 (1049)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~ 361 (1049)
.+|.|++.+++++.. ......+++.+..++..-+ ..++|+..+
T Consensus 113 ~l~~~i~~ll~l~~~--------~~~~~~~l~~L~~ll~~~p--tt~rp~~~k 155 (165)
T PF08167_consen 113 NLPKFIQSLLQLLQD--------SSCPETALDALATLLPHHP--TTFRPFANK 155 (165)
T ss_pred cHHHHHHHHHHHHhc--------cccHHHHHHHHHHHHHHCC--ccccchHHH
Confidence 899999999888753 3455677788888765322 245555544
No 94
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.24 E-value=31 Score=41.17 Aligned_cols=107 Identities=16% Similarity=0.329 Sum_probs=73.1
Q ss_pred CCCcchhHHHHHHHHHhhcc-------------------ccCChhHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHHh
Q 001585 487 SPVGHLRAKAAWVAGQYAHI-------------------NFSDQNNFRKALHSVVSGLR-DPELPVRVDSVFALRSFVEA 546 (1049)
Q Consensus 487 ~~~~~lr~ra~~~l~~~~~~-------------------~f~~~~~~~~~~~~ll~~L~-d~~~~V~~~Aa~AL~~~~~~ 546 (1049)
++.|-+-.|||-.+|+|-.. .|. .+........+++.|. +.+.-||-.|..-|-.+|+.
T Consensus 321 D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s-~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~ 399 (938)
T KOG1077|consen 321 DSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFS-IDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV 399 (938)
T ss_pred CCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccch-HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch
Confidence 45666667777777776332 221 1334455677888887 78888999999999999987
Q ss_pred cccccccccchHHHHHHHHHHhhhhchh---hHHHHHHHHHHHccCcccccHHHHHHHH
Q 001585 547 CRDLNEIRPILPQLLDEFFKLMNEVENE---DLVFTLETIVDKFGEEMAPYALGLCQNL 602 (1049)
Q Consensus 547 ~~~~~~l~p~l~~il~~L~~ll~~~~~~---~l~~~l~~iv~~~~~~i~p~~~~l~~~L 602 (1049)
. ....|++.|++.+...+.. ++..=+.-+.+.|..+..-|+..+.+.+
T Consensus 400 ~--------Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLi 450 (938)
T KOG1077|consen 400 S--------NAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLI 450 (938)
T ss_pred h--------hHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 4 5677888888888776543 3443344456788888777766655433
No 95
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=92.20 E-value=0.094 Score=45.83 Aligned_cols=66 Identities=24% Similarity=0.395 Sum_probs=49.4
Q ss_pred CCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHH
Q 001585 486 SSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFF 565 (1049)
Q Consensus 486 ~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~ 565 (1049)
+++++.+|..|++++|++.+ ..+++.++..++|++..||..|+.||..+=+ +..++.|.
T Consensus 10 ~~~~~~vr~~a~~~L~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~------------~~~~~~L~ 68 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGELGD---------PEAIPALIELLKDEDPMVRRAAARALGRIGD------------PEAIPALI 68 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCTH---------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH------------HHTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHcCC---------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------HHHHHHHH
Confidence 67899999999999985432 3667888888899999999999999997521 33555555
Q ss_pred HHhhhhc
Q 001585 566 KLMNEVE 572 (1049)
Q Consensus 566 ~ll~~~~ 572 (1049)
.++.+.+
T Consensus 69 ~~l~~~~ 75 (88)
T PF13646_consen 69 KLLQDDD 75 (88)
T ss_dssp HHHTC-S
T ss_pred HHHcCCC
Confidence 5665543
No 96
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=92.18 E-value=1.1 Score=56.59 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=14.8
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHH
Q 001585 91 DHILVFVAQVPPLLRVQLGECLKTIIH 117 (1049)
Q Consensus 91 ~~ll~~L~~~~~~ir~~l~~~i~~Ia~ 117 (1049)
.+|+.+|.++...-|.-++.+++.|.+
T Consensus 6 ~RLirGl~S~r~~aR~Gfs~~Lte~l~ 32 (784)
T PF04931_consen 6 KRLIRGLASSRESARLGFSLALTELLS 32 (784)
T ss_pred HHHhcccCCChHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555554
No 97
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.17 E-value=42 Score=42.63 Aligned_cols=399 Identities=13% Similarity=0.107 Sum_probs=218.1
Q ss_pred hhhccccChhhHhh-hhcCH-HHHHhHhcCcccccCCHHHHHHHHHHHHHHhc---c-----cchH-HHHHHHHHHHhcc
Q 001585 367 VFPLMCFNDNDQKL-WDEDP-HEYVRKGYDIIEDLYSPRTASMDFVSELVRKR---G-----KENL-QKFIQFIVGIFKR 435 (1049)
Q Consensus 367 i~p~l~l~~~d~e~-we~Dp-~efi~~~~d~~~d~~s~R~aA~~ll~~L~~~~---~-----~~~~-~~~~~~i~~~l~~ 435 (1049)
++|-+|-.+-|.+. |.+-. ..-..-. ..-..|.+-.+-|..|++.. . ++++ ..--+|+...++-
T Consensus 501 LLP~FC~~P~Dl~~sF~~la~~l~~al~-----~~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ 575 (1176)
T KOG1248|consen 501 LLPGFCNYPVDLAESFTDLAPILGAALL-----KRPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNV 575 (1176)
T ss_pred hChhhhCCCccHHHHHHHHHHHHHHHHh-----cchHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHH
Confidence 35878887777654 43321 1100001 11246888888888888764 1 1111 1112334444555
Q ss_pred cCCCCcCC-CCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCC----CCcchhHHHHHHHHHhhccccCC
Q 001585 436 YDETPVEY-KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSS----PVGHLRAKAAWVAGQYAHINFSD 510 (1049)
Q Consensus 436 ~~~~~~~~-~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~----~~~~lr~ra~~~l~~~~~~~f~~ 510 (1049)
|.+.+.+. .....+...|..+.. ..+.... .++..-|...+-....+ -.++.+.+-+..+-..+.+. +
T Consensus 576 ytq~~~~~~~~l~~~~~~L~~i~~--~~~~~t~---~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~--~ 648 (1176)
T KOG1248|consen 576 YTQTVAAGRKILASRSTVLEIIRV--DYFTVTP---TDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQ--T 648 (1176)
T ss_pred hcCCCccccccHHHHHHHHHHHHH--HHhhccc---HHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccc--c
Confidence 55544332 234445555544431 3332221 12222232222212211 24677777777776665543 4
Q ss_pred hhHHHHHHHHHHhcC-CCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh---HHHHHHHHHHH
Q 001585 511 QNNFRKALHSVVSGL-RDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDK 586 (1049)
Q Consensus 511 ~~~~~~~~~~ll~~L-~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~~ 586 (1049)
+.....++ .+.... ++.+..||..|-.-|..++......-....++..|.+.|+.-++....-. -..++..+++.
T Consensus 649 e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~ 727 (1176)
T KOG1248|consen 649 ESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKL 727 (1176)
T ss_pred chhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 45566666 344444 34577899999999999998743344556778888888888777665543 45677777777
Q ss_pred ccCcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhh--cCChHHHHHHHhhHHHHHHHHcc
Q 001585 587 FGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESV--SRLPHLFVQIEPTLLPIMRRMLT 664 (1049)
Q Consensus 587 ~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~--~~~~~~~~~l~~~~~p~i~~~l~ 664 (1049)
.+.+..-+ +...+.+.++.. + +. +......+..|+-+|+.+-.++ ++.| ....-+-++++|..-+.
T Consensus 728 ~~~e~~~~---i~k~I~EvIL~~-K----e~--n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~ 795 (1176)
T KOG1248|consen 728 LSAEHCDL---IPKLIPEVILSL-K----EV--NVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLV 795 (1176)
T ss_pred ccHHHHHH---HHHHHHHHHHhc-c----cc--cHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhc
Confidence 66332222 222233333322 2 11 0112233344555566543444 3344 12233344566665565
Q ss_pred cchhhHHHH-HHHHHHHHhhcCCCCC-HHHHHHHHHHHHHHhhhHhhhHhhhHHhhhhHhhcCcccccccCCcchHHHHH
Q 001585 665 TDGQEVFEE-VLEIVSYMTFFSPTIS-LEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLW 742 (1049)
Q Consensus 665 ~~~~~~~~~-~l~ll~~l~~~~~~is-p~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~ 742 (1049)
++..-.... ++.+-..+.++..-++ +.+.+++..+.-++.+...+.....+..+..++...|+..+. .+.+.++
T Consensus 796 gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~----~~~~~LL 871 (1176)
T KOG1248|consen 796 GDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLS----PHLEELL 871 (1176)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHh----hhHHHHH
Confidence 555544433 4444334444444444 456677777777766555667778889999999999998875 4666666
Q ss_pred HHHHHHhcCCCCCCcccCchhhHHHHHHHhcccC-chhchHHHHHHHHHHHHhhh
Q 001585 743 SMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ-VDHWVEPYLRITVERLRRAE 796 (1049)
Q Consensus 743 ~i~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~-~~~~l~~il~~~l~~l~~~~ 796 (1049)
.-+.++....+ -..+..+-.|++.+++.++.+ +..++|.-...+++++...+
T Consensus 872 ~sll~ls~d~k--~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nIRK~r 924 (1176)
T KOG1248|consen 872 PSLLALSHDHK--IKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNIRKRR 924 (1176)
T ss_pred HHHHHHHHhhh--HHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHHHHHH
Confidence 55555543321 122345677889999998754 77888877777777665433
No 98
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.17 E-value=42 Score=42.60 Aligned_cols=138 Identities=15% Similarity=0.174 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcC---CCchhhHHHHH
Q 001585 401 SPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQT---EPYKSELERML 477 (1049)
Q Consensus 401 s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~---~~~~~~~~~~l 477 (1049)
+....-..+|..++...++-....+-.++ ..+.. ++...|.+.+-++|.+....... .+....+..-+
T Consensus 290 ~g~k~v~~fL~elS~~~P~l~~~~l~~lv-~lld~--------es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~ 360 (1251)
T KOG0414|consen 290 AGPKIVGNFLVELSERVPKLMLRQLTLLV-DLLDS--------ESYTLRNAVLEICANLVASELRDEELEEMSKSLRDEL 360 (1251)
T ss_pred cchhhHHHHHHHHHHHhHHHHHHHHHHHH-HhcCC--------chHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 34455567888888877665443332222 23322 37889999999998876554321 11112232323
Q ss_pred HHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001585 478 VQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 547 (1049)
Q Consensus 478 ~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~ 547 (1049)
..++...+.+-++++|.+++.+..++....-.+...+..++..++..+.|.+..||.+|+.-+..++..-
T Consensus 361 le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~ 430 (1251)
T KOG0414|consen 361 LELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRH 430 (1251)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcC
Confidence 3445555668899999999999999876443344678999999999999999999999999999999875
No 99
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=92.17 E-value=23 Score=39.47 Aligned_cols=121 Identities=14% Similarity=0.182 Sum_probs=79.9
Q ss_pred chHHHHHHHHHHhhhhchhhHHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHH
Q 001585 556 ILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAIS 635 (1049)
Q Consensus 556 ~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~ 635 (1049)
.+..++..+-+.....-..++..++.+++.+.++.+.|+.+.+...+...-...+.+. ..+-|-.+...++.+.
T Consensus 72 l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d------~~~yPe~r~~ff~LL~ 145 (319)
T PF08767_consen 72 LLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKD------FEEYPEHRVNFFKLLR 145 (319)
T ss_dssp HHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSST------SSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh------hhhChHHHHHHHHHHH
Confidence 3333444444433344445789999999999999999999999999888877777532 1235556677888888
Q ss_pred HHHHhhcCChHHHHHH----HhhHHHHHHHHcccchhhHHHHHHHHHHHHhhcC
Q 001585 636 TILESVSRLPHLFVQI----EPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS 685 (1049)
Q Consensus 636 ~ll~~~~~~~~~~~~l----~~~~~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~ 685 (1049)
.+++.. +..+..+ ...++..+...+.+...+..+.+++++..++.+.
T Consensus 146 ~i~~~~---f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~ 196 (319)
T PF08767_consen 146 AINEHC---FPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNV 196 (319)
T ss_dssp HHHHHH---THHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh---HHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 887764 1222222 2233444455566677788899999998888653
No 100
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.02 E-value=36 Score=41.53 Aligned_cols=76 Identities=16% Similarity=0.235 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCCC-CCchHHHHHHHHHHHHHhcc-ccccccc--chHHHHHHHHHHhhhhch-hhHHHHHHHHHHHcc
Q 001585 514 FRKALHSVVSGLRDP-ELPVRVDSVFALRSFVEACR-DLNEIRP--ILPQLLDEFFKLMNEVEN-EDLVFTLETIVDKFG 588 (1049)
Q Consensus 514 ~~~~~~~ll~~L~d~-~~~V~~~Aa~AL~~~~~~~~-~~~~l~p--~l~~il~~L~~ll~~~~~-~~l~~~l~~iv~~~~ 588 (1049)
...++|.++..|++. +.-+...||+||..+|+..+ ....+.. -+|-++++|+.+ +-.+. |....+++.|-++-+
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~I-eyiDvAEQ~LqALE~iSR~H~ 287 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTI-EYIDVAEQSLQALEKISRRHP 287 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhh-hhhHHHHHHHHHHHHHHhhcc
Confidence 577899999999875 45599999999999999986 2223333 455666666532 11111 234555555555444
Q ss_pred Cc
Q 001585 589 EE 590 (1049)
Q Consensus 589 ~~ 590 (1049)
..
T Consensus 288 ~A 289 (1051)
T KOG0168|consen 288 KA 289 (1051)
T ss_pred HH
Confidence 33
No 101
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=91.68 E-value=0.19 Score=63.34 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=18.6
Q ss_pred chhHHHHHHHHhhhh---hHHHHHHHHHHHHHhc
Q 001585 124 WPHLLDWVKHNLQDQ---QVYGALFVLRILSRKY 154 (1049)
Q Consensus 124 Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~ 154 (1049)
|.-.+..|+.-+.|+ ...|-..+|.++...+
T Consensus 1 w~Y~l~RLirGl~S~r~~aR~Gfs~~Lte~l~~~ 34 (784)
T PF04931_consen 1 WQYALKRLIRGLASSRESARLGFSLALTELLSQL 34 (784)
T ss_pred CchhHHHHhcccCCChHHHHHHHHHHHHHHHHhc
Confidence 555566666666666 3456666666666544
No 102
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.51 E-value=37 Score=40.65 Aligned_cols=281 Identities=13% Similarity=0.114 Sum_probs=157.0
Q ss_pred HHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccc
Q 001585 475 RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIR 554 (1049)
Q Consensus 475 ~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~ 554 (1049)
-+.++.+--++++++.+=-+-|+-.+|+|.+ |.....+.+-++..|+++-+-||-.|...+-.++-.. ++.++
T Consensus 108 mL~tn~~rkdl~S~n~ye~giAL~GLS~fvT-----pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY--PeAlr 180 (877)
T KOG1059|consen 108 MLTTNLLRKDLNSSNVYEVGLALSGLSCIVT-----PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKY--PEALR 180 (877)
T ss_pred HHHHHHHHHHhccCccchhhheecccccccC-----chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh--hHhHh
Confidence 4455556667788888878888888887754 4578899999999999998889999999999988875 78999
Q ss_pred cchHHHHHHHHHHhhhhchh---hHHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHH
Q 001585 555 PILPQLLDEFFKLMNEVENE---DLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCL 631 (1049)
Q Consensus 555 p~l~~il~~L~~ll~~~~~~---~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l 631 (1049)
|-.+.+.++| .+.+.. ..+.|+-.+.++-.....|.|+.+...|+. +. .+++. ..++
T Consensus 181 ~~FprL~EkL----eDpDp~V~SAAV~VICELArKnPknyL~LAP~ffklltt--------Ss-------NNWmL-IKii 240 (877)
T KOG1059|consen 181 PCFPRLVEKL----EDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVT--------SS-------NNWVL-IKLL 240 (877)
T ss_pred hhHHHHHHhc----cCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhc--------cC-------CCeeh-HHHH
Confidence 9888887765 333322 244555556666667777777776655541 11 13322 2233
Q ss_pred HHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccchhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhh------
Q 001585 632 RAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALAD------ 705 (1049)
Q Consensus 632 e~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~isp~l~~l~~~l~~~~~~------ 705 (1049)
..++ ++. | +-+.+...++|.|...+..-+ -+.-.++.+.+++.. .++..+-+-+..+.-|++.
T Consensus 241 KLF~----aLt--p-lEPRLgKKLieplt~li~sT~--AmSLlYECvNTVVa~--s~s~g~~d~~asiqLCvqKLr~fie 309 (877)
T KOG1059|consen 241 KLFA----ALT--P-LEPRLGKKLIEPITELMESTV--AMSLLYECVNTVVAV--SMSSGMSDHSASIQLCVQKLRIFIE 309 (877)
T ss_pred HHHh----hcc--c-cCchhhhhhhhHHHHHHHhhH--HHHHHHHHHHHheee--hhccCCCCcHHHHHHHHHHHhhhhh
Confidence 3222 221 1 112344455666665554321 122233444444432 2222221112222222111
Q ss_pred hHhhhHhhhHHhhhhHhhcCcccccccCCcchHHHHHHHHHHHhcCCCCCCcccCchhhHHHHHHHhcccCchhchHHHH
Q 001585 706 WAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYL 785 (1049)
Q Consensus 706 ~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il 785 (1049)
+.-.++.-+ .+| ++-. ++. .+|...+.--+++-++|.++ +++-+..|.+|+..|+-. .-+..|+
T Consensus 310 dsDqNLKYl-gLl-am~K-----I~k-tHp~~Vqa~kdlIlrcL~Dk--D~SIRlrALdLl~gmVsk------kNl~eIV 373 (877)
T KOG1059|consen 310 DSDQNLKYL-GLL-AMSK-----ILK-THPKAVQAHKDLILRCLDDK--DESIRLRALDLLYGMVSK------KNLMEIV 373 (877)
T ss_pred cCCccHHHH-HHH-HHHH-----Hhh-hCHHHHHHhHHHHHHHhccC--CchhHHHHHHHHHHHhhh------hhHHHHH
Confidence 111122211 111 0001 111 34455666667888888765 455567899999887754 2345666
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHH
Q 001585 786 RITVERLRRAEKSYLKCLLVQVIA 809 (1049)
Q Consensus 786 ~~~l~~l~~~~~~~~~~~~l~v~~ 809 (1049)
+.++..+..++...++.-++..++
T Consensus 374 k~LM~~~~~ae~t~yrdell~~II 397 (877)
T KOG1059|consen 374 KTLMKHVEKAEGTNYRDELLTRII 397 (877)
T ss_pred HHHHHHHHhccchhHHHHHHHHHH
Confidence 666666655554455554444333
No 103
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=91.03 E-value=13 Score=45.78 Aligned_cols=95 Identities=7% Similarity=-0.045 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHhhhcC-CCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCCh-h-HHHHHHHHHHhcC
Q 001585 449 KDGALLAIGALCDKLKQT-EPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ-N-NFRKALHSVVSGL 525 (1049)
Q Consensus 449 keaal~~lg~la~~l~~~-~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~-~-~~~~~~~~ll~~L 525 (1049)
-..+++++..+|+...-. +-...++...+ +..|.+.+.-+..-+..++.+.+-... +. . .-..+++.+.+.+
T Consensus 266 lrv~~~lLlNLAed~~ve~kM~~~~iV~~L----v~~Ldr~n~ellil~v~fLkkLSi~~E-NK~~m~~~giV~kL~kLl 340 (708)
T PF05804_consen 266 LRVAFYLLLNLAEDPRVELKMVNKGIVSLL----VKCLDRENEELLILAVTFLKKLSIFKE-NKDEMAESGIVEKLLKLL 340 (708)
T ss_pred HHHHHHHHHHHhcChHHHHHHHhcCCHHHH----HHHHcCCCHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCHHHHHHHh
Confidence 447778888888764311 00111222323 333455566677778888888764321 21 1 1345788889999
Q ss_pred CCCCCchHHHHHHHHHHHHHhcc
Q 001585 526 RDPELPVRVDSVFALRSFVEACR 548 (1049)
Q Consensus 526 ~d~~~~V~~~Aa~AL~~~~~~~~ 548 (1049)
.+.+..++..|..+|.++..+..
T Consensus 341 ~s~~~~l~~~aLrlL~NLSfd~~ 363 (708)
T PF05804_consen 341 PSENEDLVNVALRLLFNLSFDPE 363 (708)
T ss_pred cCCCHHHHHHHHHHHHHhCcCHH
Confidence 88877788888888888876653
No 104
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=90.87 E-value=37 Score=39.46 Aligned_cols=423 Identities=11% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccCCChHHHHHHHHH---hcCcChhhHHHHHHHHHHhhhhcCCCCCCCcCCCCC
Q 001585 6 LALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIV---DNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKIS 82 (1049)
Q Consensus 6 l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~---~~~~~~~iRq~Aai~lKn~i~~~W~~~~~~~~~~i~ 82 (1049)
...++..-.+.|...|+.--..++++++..+=...-...+. +.+.+.-+|-.|.=.|-.. |+
T Consensus 67 ff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvlm~tssiMkD~~~g~~~~~kp~AiRsL~~V---------------id 131 (898)
T COG5240 67 FFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVLMGTSSIMKDLNGGVPDDVKPMAIRSLFSV---------------ID 131 (898)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHhhcchhhhHHHHHHHHhhccCCccccccHHHHHHHHh---------------cC
Q ss_pred hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhCC--CCchhHHHHHHHHhhhh----------------hHHHHH
Q 001585 83 QVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP--EQWPHLLDWVKHNLQDQ----------------QVYGAL 144 (1049)
Q Consensus 83 ~~~k~~ir~~ll~~L~~~~~~ir~~l~~~i~~Ia~~d~P--~~Wp~Ll~~l~~~l~s~----------------~~~~~L 144 (1049)
.+.--.+-.-+-+++.++...+|...-..-..+.-..+- .+|.+=.++-+--+.+. ..+-||
T Consensus 132 ~~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHal 211 (898)
T COG5240 132 GETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHAL 211 (898)
T ss_pred cchhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHH
Q ss_pred HHHHHHHHhcccCCCCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHhh
Q 001585 145 FVLRILSRKYEYQPTDSTSMKGYRIYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSI 224 (1049)
Q Consensus 145 ~~L~~i~k~~~~~~t~~~~~~~~r~~~~~~~~~~~~l~~i~~~~~p~Ll~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~ 224 (1049)
..|+++=+.-. -.++.+.+.+..+.+-..+.+.+ ..+|+...+.
T Consensus 212 GlLyq~kr~dk----------------------------------ma~lklv~hf~~n~smknq~a~V--~lvr~~~~ll 255 (898)
T COG5240 212 GLLYQSKRTDK----------------------------------MAQLKLVEHFRGNASMKNQLAGV--LLVRATVELL 255 (898)
T ss_pred HHHHHHhcccH----------------------------------HHHHHHHHHhhcccccccchhhe--ehHHHHHHHH
Q ss_pred hccCCcccCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHH
Q 001585 225 YLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQM 304 (1049)
Q Consensus 225 ~~~lp~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~ 304 (1049)
. ++++.+.++-+++..-++... .-+.-.+.+.++++..++
T Consensus 256 ~-------~n~q~~~q~rpfL~~wls~k~-----------------emV~lE~Ar~v~~~~~~n---------------- 295 (898)
T COG5240 256 K-------ENSQALLQLRPFLNSWLSDKF-----------------EMVFLEAARAVCALSEEN---------------- 295 (898)
T ss_pred H-------hChHHHHHHHHHHHHHhcCcc-----------------hhhhHHHHHHHHHHHHhc----------------
Q ss_pred HHHhhHHHHHHHHHHHHHH-hhCCcccCHHHHHHHHHHHHhh---------cCCchhhhhchhhHHHHHHHHhhhcccc-
Q 001585 305 FQKNYAGKILECHLNLLNR-IRVGGYLPDRVTNLILQYLSNS---------ISKNSMYNLLQPRLDVLLFEIVFPLMCF- 373 (1049)
Q Consensus 305 f~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~fl~~~---------~~~~~~~~~~~~~l~~li~~~i~p~l~l- 373 (1049)
..++++....+.|.. .+..+ -.++..+++.+..+ +.++..-.++...-..|-...|...+.-
T Consensus 296 ----v~~~~~~~~vs~L~~fL~s~r---v~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTG 368 (898)
T COG5240 296 ----VGSQFVDQTVSSLRTFLKSTR---VVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTG 368 (898)
T ss_pred ----cCHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcC
Q ss_pred ChhhHhhhhcCHHHHHhHhcCc--------------------------------ccccCCHHHHHHHHHHHHHHhcccch
Q 001585 374 NDNDQKLWDEDPHEYVRKGYDI--------------------------------IEDLYSPRTASMDFVSELVRKRGKEN 421 (1049)
Q Consensus 374 ~~~d~e~we~Dp~efi~~~~d~--------------------------------~~d~~s~R~aA~~ll~~L~~~~~~~~ 421 (1049)
+++.+...-.---.|+++-.|+ .+..+-.++++.+.+....+.-++ .
T Consensus 369 t~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~-s 447 (898)
T COG5240 369 TEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPD-S 447 (898)
T ss_pred chhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCch-H
Q ss_pred HHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHH
Q 001585 422 LQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAG 501 (1049)
Q Consensus 422 ~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~ 501 (1049)
-+..+..+...+. +....+-++.++|.++....+.+. ..-+..||...+--.+.++|+.|..+++
T Consensus 448 kEraLe~LC~fIE----------Dcey~~I~vrIL~iLG~EgP~a~~-----P~~yvrhIyNR~iLEN~ivRsaAv~aLs 512 (898)
T COG5240 448 KERALEVLCTFIE----------DCEYHQITVRILGILGREGPRAKT-----PGKYVRHIYNRLILENNIVRSAAVQALS 512 (898)
T ss_pred HHHHHHHHHHHHh----------hcchhHHHHHHHHHhcccCCCCCC-----cchHHHHHHHHHHHhhhHHHHHHHHHHH
Q ss_pred HhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 001585 502 QYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSF 543 (1049)
Q Consensus 502 ~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~ 543 (1049)
+|+ ..-.++-..+.+..++-.|++|.+--||..|+-+++++
T Consensus 513 kf~-ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 513 KFA-LNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred Hhc-cCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhh
No 105
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=90.14 E-value=43 Score=38.94 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHhhccccCCh--hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHH
Q 001585 492 LRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKL 567 (1049)
Q Consensus 492 lr~ra~~~l~~~~~~~f~~~--~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~l 567 (1049)
.|......++........+- ..+..++|.++++|.-++..|+..+..+|..++++. ++.+.+|+..++..|+++
T Consensus 339 ~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~--~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 339 IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA--PELISEHLSSLIPRLLKL 414 (415)
T ss_pred hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHhc
Confidence 56666666666544332111 467899999999998778889999999999999984 889999999999999875
No 106
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=89.84 E-value=14 Score=41.86 Aligned_cols=207 Identities=14% Similarity=0.145 Sum_probs=121.8
Q ss_pred hhHhhhhcCH---HHHHhHhc---CcccccCCHHHHHHH-HHHHHHHh-cc--cchHHHHHHHHHHHhcccCCCCcCCCC
Q 001585 376 NDQKLWDEDP---HEYVRKGY---DIIEDLYSPRTASMD-FVSELVRK-RG--KENLQKFIQFIVGIFKRYDETPVEYKP 445 (1049)
Q Consensus 376 ~d~e~we~Dp---~efi~~~~---d~~~d~~s~R~aA~~-ll~~L~~~-~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~ 445 (1049)
++.+.|.+++ ..||++.. ++. +.-+-|..|.. +..-+|.. ++ .+.+..++..+.++|... .+
T Consensus 272 ~~~~~~~p~~~~~~~~v~~~l~~~~g~-e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~-------~~ 343 (516)
T KOG2956|consen 272 DSMDQLTPNSVDQSALVADLLKEISGS-ERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDS-------ED 343 (516)
T ss_pred cchhhCCCCCcchhHHHHHHHHhccCc-cchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccc-------hh
Confidence 3445555443 34565533 222 23455666665 66555553 22 234556667777777652 24
Q ss_pred chhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCc-chhHHHHHHHHHhhccccCChhHHHHHHHHHHhc
Q 001585 446 YRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVG-HLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 524 (1049)
Q Consensus 446 w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~-~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~ 524 (1049)
...|.-||..++-+...-... +...-|- -...++..-.+.++ .+|.++--++.-.+.+. +......+-+.++
T Consensus 344 ~~~k~laLrvL~~ml~~Q~~~--l~DstE~-ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~--P~~~I~~i~~~Il-- 416 (516)
T KOG2956|consen 344 EIIKKLALRVLREMLTNQPAR--LFDSTEI-AICKVLEAAKDSQDEVMRVAEEDCLTTLASHL--PLQCIVNISPLIL-- 416 (516)
T ss_pred hHHHHHHHHHHHHHHHhchHh--hhchHHH-HHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC--chhHHHHHhhHHh--
Confidence 567888888887665432110 1111222 22234434445544 55555544443344432 2222333333333
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchh---hHHHHHHHHHHHcc-CcccccHHHHHH
Q 001585 525 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE---DLVFTLETIVDKFG-EEMAPYALGLCQ 600 (1049)
Q Consensus 525 L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~---~l~~~l~~iv~~~~-~~i~p~~~~l~~ 600 (1049)
..+.+.-+.+...+.++++.. ..+.+.+.++.++..+++..+..++. +.+++|=+++.+.| +++.||...|..
T Consensus 417 --t~D~~~~~~~iKm~Tkl~e~l-~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~ 493 (516)
T KOG2956|consen 417 --TADEPRAVAVIKMLTKLFERL-SAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTS 493 (516)
T ss_pred --cCcchHHHHHHHHHHHHHhhc-CHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccH
Confidence 355666677777899999876 57888899999999998887766554 57888888888988 899999887764
No 107
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=88.80 E-value=2.5 Score=42.12 Aligned_cols=89 Identities=27% Similarity=0.425 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHH---HHHHH---HHHc
Q 001585 514 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVF---TLETI---VDKF 587 (1049)
Q Consensus 514 ~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~---~l~~i---v~~~ 587 (1049)
...+++..+..|...+-|-+.-|...+..++... ..+.+.|.+++++..+-..++.-+.+.... +|..+ -...
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~-~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERG-GGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 5778999999999988899999999999999983 578899999999999999999877775444 44444 3356
Q ss_pred cCcccccHHHHHHHHH
Q 001585 588 GEEMAPYALGLCQNLA 603 (1049)
Q Consensus 588 ~~~i~p~~~~l~~~L~ 603 (1049)
++.+.||..++...+.
T Consensus 115 G~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLN 130 (183)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 7888888888776554
No 108
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.36 E-value=0.28 Score=58.27 Aligned_cols=13 Identities=31% Similarity=0.120 Sum_probs=7.6
Q ss_pred chhHHHHHHHHHh
Q 001585 491 HLRAKAAWVAGQY 503 (1049)
Q Consensus 491 ~lr~ra~~~l~~~ 503 (1049)
-+|+-||.++--+
T Consensus 759 ~IRalAc~~L~GL 771 (1516)
T KOG1832|consen 759 CIRALACRVLLGL 771 (1516)
T ss_pred HHHHHHHHHHhcc
Confidence 4666666666433
No 109
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=87.81 E-value=31 Score=37.10 Aligned_cols=233 Identities=12% Similarity=0.160 Sum_probs=125.8
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhc
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 524 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~ 524 (1049)
++..|.-|+..++.+-+.+....--..++ .++..+...-+.+ ++-++.. +..+.....+.--+.+....++..+.+.
T Consensus 12 d~~~R~ka~~~Ls~vL~~lp~~~L~~~ev-~~L~~F~~~rl~D-~~~~~~~-l~gl~~L~~~~~~~~~~~~~i~~~l~~~ 88 (262)
T PF14500_consen 12 DPIIRAKALELLSEVLERLPPDFLSRQEV-QVLLDFFCSRLDD-HACVQPA-LKGLLALVKMKNFSPESAVKILRSLFQN 88 (262)
T ss_pred CHHHHHHHHHHHHHHHHhCCHhhccHHHH-HHHHHHHHHHhcc-HhhHHHH-HHHHHHHHhCcCCChhhHHHHHHHHHHh
Confidence 78889999999988887765311001122 3333333334433 3333222 3333333322211234567888888876
Q ss_pred CCCC--CCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhh-hchhh---HHHHHHHHHHHccCcccccHHHH
Q 001585 525 LRDP--ELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE-VENED---LVFTLETIVDKFGEEMAPYALGL 598 (1049)
Q Consensus 525 L~d~--~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~-~~~~~---l~~~l~~iv~~~~~~i~p~~~~l 598 (1049)
.+-+ ...+|...-.-+..++++. .+.+...-...+.++++++.. -+-.. ...++..++..+. +.+++.++
T Consensus 89 ~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~~~~e~l 164 (262)
T PF14500_consen 89 VDVQSLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--ISEFAEDL 164 (262)
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cchhHHHH
Confidence 6533 3458888888888888874 566666667788888887743 22222 3345555666665 35555555
Q ss_pred HHHHHHHHHHH-HhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccchhhHHHHHHHH
Q 001585 599 CQNLAAAFWRC-MNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEI 677 (1049)
Q Consensus 599 ~~~L~~~~~~~-~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~l 677 (1049)
...+.- +--+ -..+.+||.+ --+.-.+..+.+|+ ..+| .+.+.++|.+-.-|.......-.++++.
T Consensus 165 Fd~~~c-YFPI~F~pp~~dp~~-IT~edLk~~L~~cl-------~s~~----~fa~~~~p~LleKL~s~~~~~K~D~L~t 231 (262)
T PF14500_consen 165 FDVFSC-YFPITFRPPPNDPYG-ITREDLKRALRNCL-------SSTP----LFAPFAFPLLLEKLDSTSPSVKLDSLQT 231 (262)
T ss_pred HHHhhh-eeeeeeeCCCCCCCC-CCHHHHHHHHHHHh-------cCcH----hhHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 544431 1111 1223334411 01111222222222 2344 4667889999888887776677788888
Q ss_pred HHHHhhc-C-CCCCHHHHHHHH
Q 001585 678 VSYMTFF-S-PTISLEMWSLWP 697 (1049)
Q Consensus 678 l~~l~~~-~-~~isp~l~~l~~ 697 (1049)
+..++.. . ..+.|..-.+|.
T Consensus 232 L~~c~~~y~~~~~~~~~~~iw~ 253 (262)
T PF14500_consen 232 LKACIENYGADSLSPHWSTIWN 253 (262)
T ss_pred HHHHHHHCCHHHHHHHHHHHHH
Confidence 8877742 2 234444444444
No 110
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.60 E-value=76 Score=38.63 Aligned_cols=160 Identities=13% Similarity=0.192 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhh--------cCCCchh
Q 001585 400 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLK--------QTEPYKS 471 (1049)
Q Consensus 400 ~s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~--------~~~~~~~ 471 (1049)
..-|+.|..-|++++++|+..+...=|..+.+.|+.- ...-|+.=+++-.+.--+. +.+.-..
T Consensus 37 ~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D---------~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsd 107 (970)
T KOG0946|consen 37 LEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRD---------YMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSD 107 (970)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhc---------cCCHHHHHHHHHHHHHHHhcCcchhhcccchhhh
Confidence 3458888889999999997655444444444555441 1222222222222221111 1111123
Q ss_pred hHHHHHHHhhc----------cccCCCCcchhHHHHHHHHHhhccccCChhH------HHHHHHHHHhcCCCCCCchHHH
Q 001585 472 ELERMLVQHVF----------PEFSSPVGHLRAKAAWVAGQYAHINFSDQNN------FRKALHSVVSGLRDPELPVRVD 535 (1049)
Q Consensus 472 ~~~~~l~~~v~----------p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~------~~~~~~~ll~~L~d~~~~V~~~ 535 (1049)
++..|+....+ ..+..-.-.+|.-++.+++..-... +.+. ++.-+..++..|.|+.-|+|-.
T Consensus 108 d~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r--~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe 185 (970)
T KOG0946|consen 108 DLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCR--PTELQDALLVSPMGISKLMDLLRDSREPIRNE 185 (970)
T ss_pred HHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcC--CHHHHHHHHHCchhHHHHHHHHhhhhhhhchh
Confidence 44444433222 1122224579999999998875433 4322 3344566777788998999999
Q ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHHhhhh
Q 001585 536 SVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV 571 (1049)
Q Consensus 536 Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~ 571 (1049)
|..-|..+......-..+.. .+.+.+.||.++.+-
T Consensus 186 ~iLlL~eL~k~n~~IQKlVA-FENaFerLfsIIeeE 220 (970)
T KOG0946|consen 186 AILLLSELVKDNSSIQKLVA-FENAFERLFSIIEEE 220 (970)
T ss_pred HHHHHHHHHccCchHHHHHH-HHHHHHHHHHHHHhc
Confidence 99999999887632222222 366788888888753
No 111
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=87.46 E-value=2.5 Score=37.25 Aligned_cols=75 Identities=27% Similarity=0.463 Sum_probs=52.7
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh---HHHHHHHHHHHccCccc
Q 001585 516 KALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMA 592 (1049)
Q Consensus 516 ~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~~~i~ 592 (1049)
..+..++..++|+.+|||.+|..-|..++.... .-...++.++.-++..+++.++=. .+..+.+++..+.+.+.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl 79 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVL 79 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHH
Confidence 456777888999999999999999999999852 344557788888887777654322 33445555566655444
Q ss_pred c
Q 001585 593 P 593 (1049)
Q Consensus 593 p 593 (1049)
|
T Consensus 80 ~ 80 (92)
T PF10363_consen 80 P 80 (92)
T ss_pred H
Confidence 3
No 112
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=86.93 E-value=98 Score=39.17 Aligned_cols=138 Identities=19% Similarity=0.235 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHH
Q 001585 400 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 479 (1049)
Q Consensus 400 ~s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~ 479 (1049)
.-+|-+|+.-+..+..+.+......+++-+...++-. . +...|. +++.+++-+|..---......++.+.+..
T Consensus 355 t~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~-e---~~~aWH---gacLaLAELA~rGlLlps~l~dVvplI~k 427 (1133)
T KOG1943|consen 355 TVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPA-E---DDSAWH---GACLALAELALRGLLLPSLLEDVVPLILK 427 (1133)
T ss_pred chhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcC-C---chhHHH---HHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 3478888888888888887655555555444433221 1 112576 88989988887532111122344444433
Q ss_pred hhccccC----CCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhc-----CCCCCCchHHHHHHHHHHHHHh
Q 001585 480 HVFPEFS----SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG-----LRDPELPVRVDSVFALRSFVEA 546 (1049)
Q Consensus 480 ~v~p~l~----~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~-----L~d~~~~V~~~Aa~AL~~~~~~ 546 (1049)
-+.-+-. +.-..+|-.||+++-.|+... ++..+..+++.+.++ +-|+++-+|.+|+.|+...+--
T Consensus 428 aL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ray--s~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR 501 (1133)
T KOG1943|consen 428 ALHYDVRRGQHSVGQHVRDAACYVCWAFARAY--SPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGR 501 (1133)
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhcC--ChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhcc
Confidence 2221111 123479999998887776532 233344455544443 4589999999999999988743
No 113
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=86.66 E-value=0.32 Score=51.81 Aligned_cols=122 Identities=15% Similarity=0.260 Sum_probs=73.4
Q ss_pred hhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHH-----HHHHHHH
Q 001585 447 RQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNF-----RKALHSV 521 (1049)
Q Consensus 447 ~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~-----~~~~~~l 521 (1049)
+..--+++++|.+..+-........+. .++ +.+.+.|.++..-+|--|||.++.+.-- +.++. ..++|-+
T Consensus 300 ~iqtPalR~vGNIVTG~D~QTqviI~~-G~L-~a~~~lLs~~ke~irKEaCWTiSNITAG---nteqiqavid~nliPpL 374 (526)
T COG5064 300 KIQTPALRSVGNIVTGSDDQTQVIINC-GAL-KAFRSLLSSPKENIRKEACWTISNITAG---NTEQIQAVIDANLIPPL 374 (526)
T ss_pred cccCHHHHhhcCeeecCccceehheec-ccH-HHHHHHhcChhhhhhhhhheeecccccC---CHHHHHHHHhcccchHH
Confidence 445667888888776532211111111 111 2344457777778999999999887432 22333 3356788
Q ss_pred HhcCCCCCCchHHHHHHHHHHHHHhcccccccccch--HHHHHHHHHHhhhhch
Q 001585 522 VSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL--PQLLDEFFKLMNEVEN 573 (1049)
Q Consensus 522 l~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l--~~il~~L~~ll~~~~~ 573 (1049)
++.|...+...|-.||+|+.+.-..+...+++.-|+ +..+..|+.++.-.++
T Consensus 375 i~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dN 428 (526)
T COG5064 375 IHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDN 428 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCc
Confidence 889988889999999999999888764333332222 1233444555544443
No 114
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=86.23 E-value=3.1 Score=53.47 Aligned_cols=78 Identities=24% Similarity=0.236 Sum_probs=49.4
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhc
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 524 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~ 524 (1049)
++..|.+++.++|.+... . .+. ..+...+.++++.+|..|.+.+|.+.. ...++.++.+
T Consensus 788 d~~VR~aA~~aLg~~g~~----~----~~~----~~l~~aL~d~d~~VR~~Aa~aL~~l~~---------~~a~~~L~~~ 846 (897)
T PRK13800 788 DPLVRAAALAALAELGCP----P----DDV----AAATAALRASAWQVRQGAARALAGAAA---------DVAVPALVEA 846 (897)
T ss_pred CHHHHHHHHHHHHhcCCc----c----hhH----HHHHHHhcCCChHHHHHHHHHHHhccc---------cchHHHHHHH
Confidence 567777777777665321 0 011 123445667777888888888876531 2234667777
Q ss_pred CCCCCCchHHHHHHHHHHH
Q 001585 525 LRDPELPVRVDSVFALRSF 543 (1049)
Q Consensus 525 L~d~~~~V~~~Aa~AL~~~ 543 (1049)
|.|++..||..|+.||..+
T Consensus 847 L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 847 LTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred hcCCCHHHHHHHHHHHhcc
Confidence 7788878888888888764
No 115
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=85.82 E-value=1.1e+02 Score=38.66 Aligned_cols=40 Identities=10% Similarity=0.405 Sum_probs=29.0
Q ss_pred HHHH-HhccCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhh
Q 001585 26 HSLN-QFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFI 66 (1049)
Q Consensus 26 ~~L~-~~~~~p~f~~~Ll~i~~~~~~~~~iRq~Aai~lKn~i 66 (1049)
.+|. .++++-+|..-|= .+...+.|.-++=+.+..|+++|
T Consensus 26 ~~LDSslKknTaF~KklK-~~t~~~~dsli~els~lnLsKyi 66 (1128)
T KOG2051|consen 26 SKLDSSLKKNTAFMKKLK-LLTAEQYDSLIKELSTLNLSKYI 66 (1128)
T ss_pred HHhhhHhhhhhHHHHHHH-HHhhhhhHHHHHHHHhccHHHHH
Confidence 4444 4556777877776 56666778888888888888887
No 116
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=85.29 E-value=12 Score=43.37 Aligned_cols=261 Identities=11% Similarity=0.154 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchH-HHHHHHHHHhhhhchhh---HHHHHHHHHHHc
Q 001585 512 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILP-QLLDEFFKLMNEVENED---LVFTLETIVDKF 587 (1049)
Q Consensus 512 ~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~-~il~~L~~ll~~~~~~~---l~~~l~~iv~~~ 587 (1049)
.+++-+|..++..+.+++. .. .+.|+. ..+..|+.+++..+..+ +..++-.+...+
T Consensus 105 pHL~~vY~il~~~i~~~~~-------------------~~-~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~ 164 (409)
T PF01603_consen 105 PHLQLVYEILLRFIESPPF-------------------DP-AKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKF 164 (409)
T ss_dssp HHHHHHHHHHHHHHTSTT---------------------C-CTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-
T ss_pred HhHHHHHHHHHHHHHCccc-------------------cH-HHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 5778888888887776531 11 233333 67778888887665543 444444444443
Q ss_pred cCcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhc--CChHHHHHHHhhHHHHHHHHccc
Q 001585 588 GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVS--RLPHLFVQIEPTLLPIMRRMLTT 665 (1049)
Q Consensus 588 ~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~--~~~~~~~~l~~~~~p~i~~~l~~ 665 (1049)
. .+-.-+...+...|.+...+.. ...-...+|+.+++++.... -.++...-+...++|+... +
T Consensus 165 ~----~~r~~Ir~~i~~~~~~fi~e~~--------~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~---~ 229 (409)
T PF01603_consen 165 P----NLRSFIRKSINNIFYRFIYETE--------RHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKS---P 229 (409)
T ss_dssp T----TTHHHHHHHHHHHHHHHHHTTS----------STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGS---T
T ss_pred h----hhHHHHHHHHHHHHHHHhcCcc--------cccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcC---C
Confidence 3 3344555666666666665332 22234468999999998764 2333344455666675432 2
Q ss_pred chhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh-h---hHhhhHhhhHHhhhhHhhcCcccccccCCcchHHHH
Q 001585 666 DGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALA-D---WAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSL 741 (1049)
Q Consensus 666 ~~~~~~~~~l~ll~~l~~~~~~isp~l~~l~~~l~~~~~-~---~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i 741 (1049)
....|......++..++...+.++... +..+++.+- . -...++.++..++.. ..+++|. .....+
T Consensus 230 ~~~~y~~~L~~~~~~f~~kdp~l~~~~---i~~llk~WP~t~s~Kev~FL~el~~il~~---~~~~~f~-----~i~~~l 298 (409)
T PF01603_consen 230 HLSSYHQQLSYCVVQFLEKDPSLAEPV---IKGLLKHWPKTNSQKEVLFLNELEEILEV---LPPEEFQ-----KIMVPL 298 (409)
T ss_dssp GGGGTHHHHHHHHHHHHHH-GGGHHHH---HHHHHHHS-SS-HHHHHHHHHHHHHHHTT-----HHHHH-----HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCchhHHHH---HHHHHHhCCCCCchhHHHHHHHHHHHHHh---cCHHHHH-----HHHHHH
Confidence 344566777777777776655544322 222222220 0 112344444444432 2234443 567888
Q ss_pred HHHHHHHhcCCCCCCcccCchhhHHH--HHHHhcccCchhchHHHHHHHHHHHHh-hh---hhHHHHHHHHHHHHHHhhC
Q 001585 742 WSMVSSIMADKNLEDGDIEPAPKLIE--VVFQNCKGQVDHWVEPYLRITVERLRR-AE---KSYLKCLLVQVIADALYYN 815 (1049)
Q Consensus 742 ~~i~~~~l~~~~~~~~~~~~a~~ll~--~ii~~~~~~~~~~l~~il~~~l~~l~~-~~---~~~~~~~~l~v~~~~~~~~ 815 (1049)
+..+.+++++...... ..|..+.. .++ +-+...-..++..+++.|.+ ++ +..++.....++..+.-.|
T Consensus 299 f~~la~ci~S~h~qVA--ErAl~~w~n~~~~----~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d 372 (409)
T PF01603_consen 299 FKRLAKCISSPHFQVA--ERALYFWNNEYFL----SLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMD 372 (409)
T ss_dssp HHHHHHHHTSSSHHHH--HHHHGGGGSHHHH----HHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCHHHH--HHHHHHHCCHHHH----HHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 8888999876532111 11222211 000 11234445677777777754 22 5667776666777776778
Q ss_pred HHHHHHHHH
Q 001585 816 SSLTLSILH 824 (1049)
Q Consensus 816 p~~~l~~L~ 824 (1049)
|+.+-+...
T Consensus 373 ~~lf~~~~~ 381 (409)
T PF01603_consen 373 PKLFDKCAQ 381 (409)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887766543
No 117
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.11 E-value=20 Score=43.77 Aligned_cols=142 Identities=19% Similarity=0.196 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhc
Q 001585 403 RTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVF 482 (1049)
Q Consensus 403 R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~ 482 (1049)
--.|.+.+.+||+.|++.+++-+..+..+.=.+ .. ...--+.-||.+..+.+.++-+.+ |...+. +..+
T Consensus 785 yLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k---~~-~d~~lkVGEai~k~~qa~Gel~~~---y~~~Li----~tfl 853 (982)
T KOG4653|consen 785 YLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKK---LQ-TDYRLKVGEAILKVAQALGELVFK---YKAVLI----NTFL 853 (982)
T ss_pred eHHHHHHHHHHHHhcchhhHHHHHHHHHhcccC---CC-ccceehHHHHHHHHHHHhccHHHH---HHHHHH----HHHH
Confidence 345666777999999998888776644332211 11 112466778888777777665543 232332 3333
Q ss_pred cccCCCCcchhHHHHHHHHHhhccc-cCChhHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHHhcccccccccch
Q 001585 483 PEFSSPVGHLRAKAAWVAGQYAHIN-FSDQNNFRKALHSVVSGLR-DPELPVRVDSVFALRSFVEACRDLNEIRPIL 557 (1049)
Q Consensus 483 p~l~~~~~~lr~ra~~~l~~~~~~~-f~~~~~~~~~~~~ll~~L~-d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l 557 (1049)
....+|....|+.+|-.+|+.+... |.-.+.+.+++..+++... |..+.||.+|+.-+..++... ...+.|++
T Consensus 854 ~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~t--g~dlLpil 928 (982)
T KOG4653|consen 854 SGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGT--GEDLLPIL 928 (982)
T ss_pred HhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhcc--chhhHHHH
Confidence 4456788899999999999987643 3323567888888888775 778899999999999999874 45555543
No 118
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=84.88 E-value=0.77 Score=56.16 Aligned_cols=13 Identities=8% Similarity=0.199 Sum_probs=8.0
Q ss_pred chHHHHHHHHHHH
Q 001585 736 DYQQSLWSMVSSI 748 (1049)
Q Consensus 736 ~~~~~i~~i~~~~ 748 (1049)
.|++.++++|..+
T Consensus 1530 Rf~qat~qVFhaL 1542 (3015)
T KOG0943|consen 1530 RFLQATAQVFHAL 1542 (3015)
T ss_pred HHHHHHHHHHhhe
Confidence 3666676666544
No 119
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=84.42 E-value=0.77 Score=54.84 Aligned_cols=9 Identities=22% Similarity=0.235 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 001585 334 VTNLILQYL 342 (1049)
Q Consensus 334 ~~~~~l~fl 342 (1049)
++.++++.|
T Consensus 625 ~~~~Al~vL 633 (1516)
T KOG1832|consen 625 LLQYALGVL 633 (1516)
T ss_pred HHHHHHhhe
Confidence 334444443
No 120
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.65 E-value=1.6e+02 Score=38.83 Aligned_cols=186 Identities=13% Similarity=0.139 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHhhc-CChHHHHHHHhhHHHHHHH--HcccchhhHHHHHHHHHHHHhhcC-------CCCCHHHHHHH
Q 001585 627 AVGCLRAISTILESVS-RLPHLFVQIEPTLLPIMRR--MLTTDGQEVFEEVLEIVSYMTFFS-------PTISLEMWSLW 696 (1049)
Q Consensus 627 ~~~~le~i~~ll~~~~-~~~~~~~~l~~~~~p~i~~--~l~~~~~~~~~~~l~ll~~l~~~~-------~~isp~l~~l~ 696 (1049)
+..+.-|++.|++... ..|..-.++..++.=++.. -|..-...++..-+.|+..+.... +.....+.++|
T Consensus 67 rllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f 146 (1266)
T KOG1525|consen 67 RLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELF 146 (1266)
T ss_pred hHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHH
Confidence 3456678999999874 3454333333332222221 111122344444455555555432 11122233444
Q ss_pred HHHHHHHhhhHhhhHhhhHHhhhhHhhcCcccccccCCcchHHHHHHHHHHHhcCCCCCCcccCchhhHHHHHHHhcccC
Q 001585 697 PLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ 776 (1049)
Q Consensus 697 ~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~ 776 (1049)
-.++..........+-.+..++...|.-.-. -..+.+.-++.+++... ......|..|.+.++..|..+
T Consensus 147 ~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~--------v~~e~L~~ll~~lv~~~---~~~~~~a~~la~~li~~~a~~ 215 (1266)
T KOG1525|consen 147 RTFFDLARKGHPKKVFNMLDIAIMLITEEDT--------VQSELLDVLLENLVKPG---RDTIKEADKLASDLIERCADN 215 (1266)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhhcc--------chHHHHHHHHHHhccCC---CCccHHHHHHHHHHHHHhhhh
Confidence 4443333111111111133333332222111 12233334566776543 222356899999999999888
Q ss_pred chhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhCHHHHHHHHH
Q 001585 777 VDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILH 824 (1049)
Q Consensus 777 ~~~~l~~il~~~l~~l~~~~~~~~~~~~l~v~~~~~~~~p~~~l~~L~ 824 (1049)
+.+.+..++...+..-. .....++..+..++..+-.+.|+.+..++.
T Consensus 216 ~~~~i~~f~~~~~~~~~-s~~~~~~~~~he~i~~L~~~~p~ll~~vip 262 (1266)
T KOG1525|consen 216 LEDTIANFLNSCLTEYK-SRQSSLKIKYHELILELWRIAPQLLLAVIP 262 (1266)
T ss_pred hchhHHHHHHHHHhhcc-ccccchhhHHHHHHHHHHHhhHHHHHHHHH
Confidence 77777777666544322 134566777888899988889998887774
No 121
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=83.45 E-value=88 Score=35.59 Aligned_cols=240 Identities=12% Similarity=0.221 Sum_probs=108.2
Q ss_pred cCCHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCc--hhhH
Q 001585 399 LYSPRTASMDFVSELVRKRGKE---NLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPY--KSEL 473 (1049)
Q Consensus 399 ~~s~R~aA~~ll~~L~~~~~~~---~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~--~~~~ 473 (1049)
.+..+.++.+.+...+++|++. .++.++..+.++|.+....+. .++ .-..++.-++.+++...-...+ .+.+
T Consensus 109 l~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~--~D~-lv~~al~FL~~v~~~~~~~~lf~~~~~L 185 (370)
T PF08506_consen 109 LEKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPK--YDI-LVSKALQFLSSVAESPHHKNLFENKPHL 185 (370)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGG--GHH-HHHHHHHHHHHHHTSHHHHTTT-SHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--ccH-HHHHHHHHHHHHHcchhHHHHhCCHHHH
Confidence 3457888888888888888653 344455555566655322211 011 1223444444444332211111 3456
Q ss_pred HHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCCh-hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccc
Q 001585 474 ERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ-NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNE 552 (1049)
Q Consensus 474 ~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~-~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~ 552 (1049)
..++.+.|+|.+. .|-.- .--|.+ +| |+...- +.. .| ..-.|.+|+.-++.++... ...
T Consensus 186 ~~Iie~VI~Pnl~-------~~e~D-~ElfEd----dP~EYIrrd----~e~-sd-~~TrR~AA~dfl~~L~~~~--~~~ 245 (370)
T PF08506_consen 186 QQIIEKVIFPNLC-------LREED-EELFED----DPEEYIRRD----LEG-SD-SDTRRRAACDFLRSLCKKF--EKQ 245 (370)
T ss_dssp HHHHHHTHHHHHS---------HHH-HHHHHH----SHHHHHHHH----SCS-S----SHHHHHHHHHHHHHHHH--HHH
T ss_pred HHHHHHhccCccC-------CCHHH-HHHHcc----CHHHHHHhh----ccc-cc-cCCcHHHHHHHHHHHHHHH--hHH
Confidence 7777777777654 11111 111111 22 332221 111 12 2346888999999999874 445
Q ss_pred cccchHHHHHHHHHHhhhh------chhhHHHHHHHHHHHcc---Ccccc--cHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 001585 553 IRPILPQLLDEFFKLMNEV------ENEDLVFTLETIVDKFG---EEMAP--YALGLCQNLAAAFWRCMNTAEADEDADD 621 (1049)
Q Consensus 553 l~p~l~~il~~L~~ll~~~------~~~~l~~~l~~iv~~~~---~~i~p--~~~~l~~~L~~~~~~~~~~~~~d~~~~~ 621 (1049)
+.+.+...++.++.-.... ..|....++.++..+.. ..++. -..++.+.+...+..-.+ ++.+
T Consensus 246 v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~----- 319 (370)
T PF08506_consen 246 VTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVN----- 319 (370)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS------
T ss_pred HHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCC-----
Confidence 5555555555554422211 12345566666654432 11111 111333333322221122 1111
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccchhhHHHH
Q 001585 622 PGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEE 673 (1049)
Q Consensus 622 ~~~~~~~~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~ 673 (1049)
..++....++..+.+.-..+. ...-..++|.+..+|..+..-...+
T Consensus 320 ~~piLka~aik~~~~Fr~~l~------~~~l~~~~~~l~~~L~~~~~vv~ty 365 (370)
T PF08506_consen 320 SHPILKADAIKFLYTFRNQLP------KEQLLQIFPLLVNHLQSSSYVVHTY 365 (370)
T ss_dssp S-HHHHHHHHHHHHHHGGGS-------HHHHHHHHHHHHHHTTSS-HHHHHH
T ss_pred CCcchHHHHHHHHHHHHhhCC------HHHHHHHHHHHHHHhCCCCcchhhh
Confidence 256666566666655443332 2234457888888887654433333
No 122
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.10 E-value=14 Score=40.41 Aligned_cols=65 Identities=14% Similarity=0.066 Sum_probs=50.1
Q ss_pred ccccCCCCcchhHHHHHHHHHhhccccCCh----hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001585 482 FPEFSSPVGHLRAKAAWVAGQYAHINFSDQ----NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 547 (1049)
Q Consensus 482 ~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~----~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~ 547 (1049)
+..+.+..+-+|.+||..+|.++- .-+.- +.-..+++.++..|.+++..|+..|..||.++..+.
T Consensus 214 Vsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt 282 (550)
T KOG4224|consen 214 VSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT 282 (550)
T ss_pred hhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc
Confidence 334567789999999999998862 11111 222458899999999999999999999999998764
No 123
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=82.99 E-value=3.9 Score=35.97 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=55.8
Q ss_pred hhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001585 480 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 547 (1049)
Q Consensus 480 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~ 547 (1049)
.++..+++|.+-+|+.++..+++...-.-........++..++..|.|++.=|...|+.+|..+++..
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 34556788888899999999999865331123557889999999999999999999999999999874
No 124
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=82.85 E-value=1.2e+02 Score=36.78 Aligned_cols=159 Identities=11% Similarity=0.126 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccchhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 001585 622 PGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMME 701 (1049)
Q Consensus 622 ~~~~~~~~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~isp~l~~l~~~l~~ 701 (1049)
+++..+.|++.+++.|...+....-....++..++|.+.-.++.....+...++++++.+ .-.=+....+.+++...++
T Consensus 428 dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~-eeDfkd~~ill~aye~t~n 506 (970)
T COG5656 428 DNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI-EEDFKDNGILLEAYENTHN 506 (970)
T ss_pred ccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH-HHhcccchHHHHHHHHHHH
Confidence 577788899999999988664433344556666677666666666666778899988887 2221223346688999999
Q ss_pred HHhhhHhhhHhhhHHhhhhHhhcCcccccccCCcchHHHHHHHHHHHhc-CCCCCCcccCchhhHHHHHHHhcccCchhc
Q 001585 702 ALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMA-DKNLEDGDIEPAPKLIEVVFQNCKGQVDHW 780 (1049)
Q Consensus 702 ~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~~l~-~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~ 780 (1049)
|+++......-+..-.|..|+... + .++..-+.+-.+.++++. ++..+ .-....+++.++...+.++.||
T Consensus 507 cl~nn~lpv~ieAalAlq~fi~~~--q----~h~k~sahVp~tmekLLsLSn~fe---iD~LS~vMe~fVe~fseELspf 577 (970)
T COG5656 507 CLKNNHLPVMIEAALALQFFIFNE--Q----SHEKFSAHVPETMEKLLSLSNTFE---IDPLSMVMESFVEYFSEELSPF 577 (970)
T ss_pred HHhcCCcchhhhHHHHHHHHHhch--h----hhHHHHhhhhHHHHHHHHhccccc---chHHHHHHHHHHHHhHHhhchh
Confidence 987633222223334455555543 1 122344455555566654 22122 1235567778888887777777
Q ss_pred hHHHHHHHHH
Q 001585 781 VEPYLRITVE 790 (1049)
Q Consensus 781 l~~il~~~l~ 790 (1049)
-+.+.+.+.+
T Consensus 578 a~eLa~~Lv~ 587 (970)
T COG5656 578 APELAGSLVR 587 (970)
T ss_pred HHHHHHHHHH
Confidence 7766666555
No 125
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.69 E-value=39 Score=41.38 Aligned_cols=168 Identities=14% Similarity=0.222 Sum_probs=99.6
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHH---HHHHHccCcc
Q 001585 515 RKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLE---TIVDKFGEEM 591 (1049)
Q Consensus 515 ~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~---~iv~~~~~~i 591 (1049)
.+.++-.+..+.|+.+|+|.+|...|..+++..+....+ ....+++..+..+..-++=...+++. ++++.+.+.+
T Consensus 726 ~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~--~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~i 803 (982)
T KOG4653|consen 726 IEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLI--QGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDI 803 (982)
T ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhh--hHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhh
Confidence 455888888999999999999999999999976433333 34567777777776544333456666 6667777776
Q ss_pred cccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccchhhHH
Q 001585 592 APYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVF 671 (1049)
Q Consensus 592 ~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~ 671 (1049)
.| .|...+.+ ..+ .+. -+.....| |+|..++++.+. ........++..+.+.+......+-
T Consensus 804 l~-------dL~e~Y~s---~k~-k~~---~d~~lkVG--Eai~k~~qa~Ge---l~~~y~~~Li~tfl~gvrepd~~~R 864 (982)
T KOG4653|consen 804 LP-------DLSEEYLS---EKK-KLQ---TDYRLKVG--EAILKVAQALGE---LVFKYKAVLINTFLSGVREPDHEFR 864 (982)
T ss_pred HH-------HHHHHHHh---ccc-CCC---ccceehHH--HHHHHHHHHhcc---HHHHHHHHHHHHHHHhcCCchHHHH
Confidence 65 23322221 111 110 01122233 888888888653 3444445555555555554455666
Q ss_pred HHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHH
Q 001585 672 EEVLEIVSYMTFFS-PTISLEMWSLWPLMMEAL 703 (1049)
Q Consensus 672 ~~~l~ll~~l~~~~-~~isp~l~~l~~~l~~~~ 703 (1049)
-.++..++.+.+.. ..++..+.+++..+....
T Consensus 865 aSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~ 897 (982)
T KOG4653|consen 865 ASSLANLGQLCQLLAFQVSDFFHEVLQLILSLE 897 (982)
T ss_pred HhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 77777777666432 345554555555444443
No 126
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=80.72 E-value=1.6e+02 Score=36.73 Aligned_cols=390 Identities=13% Similarity=0.064 Sum_probs=177.0
Q ss_pred hhcCHHHHHhHhcCcccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHH
Q 001585 381 WDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALC 460 (1049)
Q Consensus 381 we~Dp~efi~~~~d~~~d~~s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la 460 (1049)
+...+..|+.-..| +..++|-+|.+-+..+...+.... .+...+.+.+-+... ...|+.+...--....++
T Consensus 274 ~s~v~~~~~~L~~D---dqdsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~~----d~~~~v~~~~~~~~~~L~ 344 (759)
T KOG0211|consen 274 KSEVLPTLIQLLRD---DQDSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQAVE----DGSWRVSYMVADKFSELS 344 (759)
T ss_pred HhhccHHHhhhhhc---chhhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHhc----ChhHHHHHHHhhhhhhHH
Confidence 33444445444333 357899999999999988875431 111222222211111 137888887777666666
Q ss_pred HhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccC----ChhHHHHHHHHHHhcCCCCCCchHHHH
Q 001585 461 DKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFS----DQNNFRKALHSVVSGLRDPELPVRVDS 536 (1049)
Q Consensus 461 ~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~----~~~~~~~~~~~ll~~L~d~~~~V~~~A 536 (1049)
..+.. .....+....+.. .+.+...-.|..+..=.+.++.+. + ..-....+++.+-.+..|++..||.+.
T Consensus 345 ~~~~~-~~~~~~~~~~~~~----l~~~~~~e~r~a~a~~~~~l~~~l-~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~ 418 (759)
T KOG0211|consen 345 SAVGP-SATRTQLVPPVSN----LLKDEEWEVRYAIAKKVQKLACYL-NASCYPNIPDSSILPEVQVLVLDNALHVRSAL 418 (759)
T ss_pred HHhcc-ccCcccchhhHHH----HhcchhhhhhHHhhcchHHHhhhc-CcccccccchhhhhHHHHHHHhcccchHHHHH
Confidence 65543 2222222222222 234444555555555555554322 1 112345668888888889999999888
Q ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHhcccCC
Q 001585 537 VFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEAD 616 (1049)
Q Consensus 537 a~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d 616 (1049)
+.-+............+.+.++..+..+-.....+- ..+...+..... ..+.+.. ..+.+.+.+.+..+.. |
T Consensus 419 a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~-lnli~~ls~~~~-v~~v~g~--~~~s~slLp~i~el~~----d 490 (759)
T KOG0211|consen 419 ASVITGLSPILPKERTISELLPLLIGNLKDEDPIVR-LNLIDKLSLLEE-VNDVIGI--STVSNSLLPAIVELAE----D 490 (759)
T ss_pred hccccccCccCCcCcCccccChhhhhhcchhhHHHH-HhhHHHHHHHHh-ccCcccc--hhhhhhhhhhhhhhcc----c
Confidence 776666554433233444444444333221111110 011111111111 1111110 1122222222222110 1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccchhhHHHHHHHHHHHHhhcCCCCCHHHHHH-
Q 001585 617 EDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSL- 695 (1049)
Q Consensus 617 ~~~~~~~~~~~~~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~isp~l~~l- 695 (1049)
.+...++.+++.+-.+..-.+. .-+-+.+-+++..-+.+.+....+.+..-+..+++.-. .-|..
T Consensus 491 -----~~wRvr~ail~~ip~la~q~~~-----~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G----~~w~~~ 556 (759)
T KOG0211|consen 491 -----LLWRVRLAILEYIPQLALQLGV-----EFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG----SEWARL 556 (759)
T ss_pred -----hhHHHHHHHHHHHHHHHHhhhh-----HHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC----cchhHH
Confidence 1333444556655555544330 11222333444444434344455555555555543222 11322
Q ss_pred --HHHHHHHHhhhHhhhHh--hhHHhhhhHhhcCcccccccCCcchHHHHHHHHHHHhcCCCCCCcccCchhhHHHHHHH
Q 001585 696 --WPLMMEALADWAIDFFP--NILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQ 771 (1049)
Q Consensus 696 --~~~l~~~~~~~~~~~l~--~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~~l~~~~~~~~~~~~a~~ll~~ii~ 771 (1049)
.|.++....+. .|.. ..+..+..++....+.+ +.+.++.++..+..+. ...-+..+++.+..+.-
T Consensus 557 ~~i~k~L~~~~q~--~y~~R~t~l~si~~la~v~g~ei-------~~~~Llp~~~~l~~D~--vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 557 EEIPKLLAMDLQD--NYLVRMTTLFSIHELAEVLGQEI-------TCEDLLPVFLDLVKDP--VANVRINVAKHLPKILK 625 (759)
T ss_pred HhhHHHHHHhcCc--ccchhhHHHHHHHHHHHHhccHH-------HHHHHhHHHHHhccCC--chhhhhhHHHHHHHHHh
Confidence 23333322221 1332 33444554444443333 4566777777765543 22235678888888777
Q ss_pred hcccC-chhchHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHhhCHHHHHHH
Q 001585 772 NCKGQ-VDHWVEPYLRITVERLRRAE---KSYLKCLLVQVIADALYYNSSLTLSI 822 (1049)
Q Consensus 772 ~~~~~-~~~~l~~il~~~l~~l~~~~---~~~~~~~~l~v~~~~~~~~p~~~l~~ 822 (1049)
.+... .+..+-+++.. |.... -+++..-...++.-+..+.+..+...
T Consensus 626 ~L~~~~~~~~v~pll~~----L~~d~~~dvr~~a~~a~~~i~l~~~~~~~d~~~~ 676 (759)
T KOG0211|consen 626 LLDESVRDEEVLPLLET----LSSDQELDVRYRAILAFGSIELSRLESSLDVRDK 676 (759)
T ss_pred hcchHHHHHHHHHHHHH----hccCcccchhHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 65442 23333333333 32222 23333333444444445555444433
No 127
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=80.25 E-value=1e+02 Score=34.16 Aligned_cols=161 Identities=14% Similarity=0.149 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHH---HHHHHHHHHccCc
Q 001585 514 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLV---FTLETIVDKFGEE 590 (1049)
Q Consensus 514 ~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~---~~l~~iv~~~~~~ 590 (1049)
+..-+...+..+.+...-.|..|-.++..++......+.+......++..+.+.++....++.. .++.-++-.++..
T Consensus 41 ~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g 120 (309)
T PF05004_consen 41 LEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAG 120 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCC
Confidence 3444556666677766778999999999999776567778888899999999999876544432 3344444444411
Q ss_pred ccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHH-HHccc----
Q 001585 591 MAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMR-RMLTT---- 665 (1049)
Q Consensus 591 i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~-~~l~~---- 665 (1049)
.-..++...+.+.+.+++.... .....+..++.|++-+.-..+..++.+....+.+--++. .+...
T Consensus 121 --~~~~ei~~~~~~~L~~~l~d~s-------~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~ 191 (309)
T PF05004_consen 121 --EDSEEIFEELKPVLKRILTDSS-------ASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNA 191 (309)
T ss_pred --ccHHHHHHHHHHHHHHHHhCCc-------cchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCc
Confidence 2245677777777777665322 122334567777775544434444333311111111111 11221
Q ss_pred ------chhhHHHHHHHHHHHHhh
Q 001585 666 ------DGQEVFEEVLEIVSYMTF 683 (1049)
Q Consensus 666 ------~~~~~~~~~l~ll~~l~~ 683 (1049)
+...+...+++-|+.++-
T Consensus 192 ~~~~~~~~~~l~~aAL~aW~lLlt 215 (309)
T PF05004_consen 192 PVVAAEDDAALVAAALSAWALLLT 215 (309)
T ss_pred ccccCCCccHHHHHHHHHHHHHHh
Confidence 223578888888888874
No 128
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=79.93 E-value=44 Score=36.50 Aligned_cols=101 Identities=11% Similarity=0.149 Sum_probs=58.0
Q ss_pred CCchhhhHHH-HHHHHHHH-hhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccc-------cCChhHH
Q 001585 444 KPYRQKDGAL-LAIGALCD-KLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN-------FSDQNNF 514 (1049)
Q Consensus 444 ~~w~~keaal-~~lg~la~-~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~-------f~~~~~~ 514 (1049)
+.||...+.- ..+..+.. .. +.. .....=+++...++..+-+..+-.|.++|.++..+..-. ++.-...
T Consensus 87 ~~WK~~~~~~~~~l~w~v~~~~-~~~-~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~ 164 (282)
T PF10521_consen 87 QPWKSNPGLASHVLSWIVLSQL-DRP-WISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLF 164 (282)
T ss_pred CCcccCCcccHHHHHHHHHhcC-Ccc-hHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChH
Confidence 3798888544 44444443 22 211 112222333444444445678999999999999986522 1222335
Q ss_pred HHHHHHHHhcCC--------CCCCchHHHHHHHHHHHHHh
Q 001585 515 RKALHSVVSGLR--------DPELPVRVDSVFALRSFVEA 546 (1049)
Q Consensus 515 ~~~~~~ll~~L~--------d~~~~V~~~Aa~AL~~~~~~ 546 (1049)
..+.+++..++. +....+-..|-.|+..++..
T Consensus 165 ~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~ 204 (282)
T PF10521_consen 165 SVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKT 204 (282)
T ss_pred HHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHh
Confidence 566667777765 34455666677777777654
No 129
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=79.75 E-value=60 Score=35.77 Aligned_cols=142 Identities=17% Similarity=0.133 Sum_probs=92.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcc-C----CChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCcCCCCChHH
Q 001585 11 QGALSPNPEERKAAEHSLNQFQY-T----PQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVD 85 (1049)
Q Consensus 11 ~~tls~d~~~r~~AE~~L~~~~~-~----p~f~~~Ll~i~~~~~~~~~iRq~Aai~lKn~i~~~W~~~~~~~~~~i~~~~ 85 (1049)
-+..++|+.+|..|=.-|--+.- . ..+...+.+.+.. + +..+|-.|.=.+=-.+..|=...-+.....-....
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~-~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQK-D-DEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh-C-CHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 45678899999999888875543 2 2355566666633 3 77788776544444443321110000000012334
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhhhh---hHHHHHHHHHHHHHhc
Q 001585 86 KDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKY 154 (1049)
Q Consensus 86 k~~ir~~ll~~L~~~~~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~ 154 (1049)
...+-+.+...+.+.++.+|...++.++++.-.+--..||+++..|+-..=++ .....-.||..++..|
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y 183 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVY 183 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHH
Confidence 56677778888887788999999999999998876656799999987776555 2244556888888888
No 130
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=78.80 E-value=14 Score=42.76 Aligned_cols=106 Identities=12% Similarity=0.235 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhhcCCchhhhhchhhHHH----HHHHHhhhccccChhhHhhhhcCHHHHHhHhcCcccccCCHHHHHH
Q 001585 332 DRVTNLILQYLSNSISKNSMYNLLQPRLDV----LLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASM 407 (1049)
Q Consensus 332 ~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~----li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aA~ 407 (1049)
-+++.++++...++..++..+ +.|++.+ ++..++-++|+.+++. ++.|..|.-|+
T Consensus 261 L~lL~~lm~m~rSLl~Np~i~--lepYlh~L~PSvlTCvVsk~l~~~p~~-------------------dnhwaLRDfAA 319 (576)
T KOG2549|consen 261 LELLIYLMRMVRSLLDNPNIF--LEPYLHQLVPSVLTCVVSKNLCLRPEL-------------------DNHWALRDFAA 319 (576)
T ss_pred HHHHHHHHHHHHHHhcCCccc--hhhHHHHHhhHHHHhhhhhhccCCccc-------------------cchHHHHHHHH
Confidence 366777788877777777432 3555544 4455555777777632 24678899999
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHH
Q 001585 408 DFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCD 461 (1049)
Q Consensus 408 ~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~ 461 (1049)
.++..+|.+++... ..+-+-|...+.+.-.++. ..|-..+|++..+..++.
T Consensus 320 ~ll~~i~k~f~~~y-~~L~~Rit~tl~k~l~D~~--~~~st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 320 RLLAQICKNFSTLY-NNLQPRITRTLSKALLDNK--KPLSTHYGAIAGLSELGH 370 (576)
T ss_pred HHHHHHHHhhhhHH-HHHHHHHHHHHHHHhcCCC--CCchhhhhHHHHHHHhhh
Confidence 99999999997532 2244444444444333332 378899999998887765
No 131
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=78.77 E-value=67 Score=32.35 Aligned_cols=121 Identities=16% Similarity=0.283 Sum_probs=65.4
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHHccCcccccHHHHHHHHH-
Q 001585 525 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLA- 603 (1049)
Q Consensus 525 L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~- 603 (1049)
+.|++..||..|+.++..+++.. +||+.. ..+.+ .=...++|+...+...+.
T Consensus 49 l~Dp~~kvR~aA~~~l~~lL~gs------k~~L~~--------Ae~~~-------------~~~~sFtslS~tLa~~i~~ 101 (182)
T PF13251_consen 49 LKDPSPKVRAAAASALAALLEGS------KPFLAQ--------AEESK-------------GPSGSFTSLSSTLASMIME 101 (182)
T ss_pred HcCCchhHHHHHHHHHHHHHHcc------HHHHHH--------HHhcC-------------CCCCCcccHHHHHHHHHHH
Confidence 46999999999999999999874 243322 11111 011245666555444333
Q ss_pred --HHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhc---CChHHHHHHHhhHHHHHHHHcccchhhHHHHHHHHH
Q 001585 604 --AAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVS---RLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIV 678 (1049)
Q Consensus 604 --~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~---~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll 678 (1049)
..+...++... +......++.|++.++.+.. -.++....+...+.|.+ .+.+.+....++-.+
T Consensus 102 lH~~Ll~~L~~E~--------~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l----~~~d~~v~v~~l~~~ 169 (182)
T PF13251_consen 102 LHRGLLLALQAEK--------SPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLL----RHRDPNVRVAALSCL 169 (182)
T ss_pred HHHHHHHHHhccc--------ccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHH----hcCCCcHHHHHHHHH
Confidence 33333333211 22233478888888887752 13333333333333333 334455666666667
Q ss_pred HHHhhc
Q 001585 679 SYMTFF 684 (1049)
Q Consensus 679 ~~l~~~ 684 (1049)
+.++-.
T Consensus 170 ~~l~s~ 175 (182)
T PF13251_consen 170 GALLSV 175 (182)
T ss_pred HHHHcC
Confidence 766643
No 132
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.49 E-value=56 Score=39.66 Aligned_cols=102 Identities=14% Similarity=0.175 Sum_probs=68.9
Q ss_pred HHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccc
Q 001585 475 RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIR 554 (1049)
Q Consensus 475 ~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~ 554 (1049)
-...+.++.+..+++|.+|+-|.-..|... -+.....+..-+..+++|.+..||..|+.+...+-.... +...
T Consensus 85 ~~avnt~~kD~~d~np~iR~lAlrtm~~l~-----v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~--~~~~ 157 (734)
T KOG1061|consen 85 ILAVNTFLKDCEDPNPLIRALALRTMGCLR-----VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP--DLVE 157 (734)
T ss_pred HhhhhhhhccCCCCCHHHHHHHhhceeeEe-----ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh--hhcc
Confidence 334556677888999999999998886643 234677888889999999999999999999999887642 2222
Q ss_pred cchHHHHHHHHHHhhhhchhhHHHHHHHHHH
Q 001585 555 PILPQLLDEFFKLMNEVENEDLVFTLETIVD 585 (1049)
Q Consensus 555 p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~ 585 (1049)
+ .+++..|-.++...+..-+..++.++.+
T Consensus 158 ~--~gl~~~L~~ll~D~~p~VVAnAlaaL~e 186 (734)
T KOG1061|consen 158 D--SGLVDALKDLLSDSNPMVVANALAALSE 186 (734)
T ss_pred c--cchhHHHHHHhcCCCchHHHHHHHHHHH
Confidence 1 2344444444543333345555555544
No 133
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=78.45 E-value=13 Score=41.82 Aligned_cols=103 Identities=14% Similarity=0.278 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhhcCCchhhhhchhhHHHHHHHHh----hhccccChhhHhhhhcCHHHHHhHhcCcccccCCHHHHHH
Q 001585 332 DRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIV----FPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASM 407 (1049)
Q Consensus 332 ~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i----~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aA~ 407 (1049)
-..+...+++...++.++.. .+.+++-+|+..++ -+.++-+.. .++.|..|.-|+
T Consensus 231 l~~L~~lm~~v~ALl~N~~l--~le~Ylh~Lip~vltclv~~~l~~~~~-------------------~~~h~~LRd~AA 289 (343)
T cd08050 231 LALLIYLMRMVRALLDNPNL--HLEPYLHQLIPSVLTCLVAKQLCSRPP-------------------DDNHWALRDYAA 289 (343)
T ss_pred HHHHHHHHHHHHHHhcCCCC--chHHhHHHHHHHHHHHhhhHhhcCCCC-------------------CchHHHHHHHHH
Confidence 35677788888888888754 34666666555433 222222111 134788999999
Q ss_pred HHHHHHHHhcccc---hHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHH
Q 001585 408 DFVSELVRKRGKE---NLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCD 461 (1049)
Q Consensus 408 ~ll~~L~~~~~~~---~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~ 461 (1049)
.++..+|++|+.. ..+.+...+...+. +|.. ..-.++||+..++.++.
T Consensus 290 ~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~----d~~~--~~~~~YGAi~GL~~lG~ 340 (343)
T cd08050 290 RLLAQICRKFSTSYNTLQPRITRTLLKALL----DPKK--PLTTHYGAIVGLSALGP 340 (343)
T ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHHHc----CCCC--CcchhhHHHHHHHHhCc
Confidence 9999999999753 33334433333332 2321 34559999999988763
No 134
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=78.40 E-value=1e+02 Score=34.42 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 001585 492 LRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 546 (1049)
Q Consensus 492 lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~ 546 (1049)
=++-|..+|++|-.+ | |+.....+.+-+.+..|.+..||.+|..-|-.||..
T Consensus 40 ~k~lasq~ip~~fk~-f--p~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 40 EKRLASQFIPRFFKH-F--PSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred HHHHHHHHHHHHHhh-C--chhhhHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 455577788888543 2 356788899999999999999999999999999976
No 135
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=78.29 E-value=1.3e+02 Score=34.32 Aligned_cols=244 Identities=10% Similarity=0.150 Sum_probs=124.4
Q ss_pred HHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCC--CcchhHHHHHHH
Q 001585 423 QKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSP--VGHLRAKAAWVA 500 (1049)
Q Consensus 423 ~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~--~~~lr~ra~~~l 500 (1049)
+.++++++.-+.+... .++..+-+..-.|+.++|.+-..-.=.+.+..++..|+..+.+-.+.++ +.-+..++.|++
T Consensus 38 ~~l~~~i~rDi~~~~~-~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~l 116 (372)
T PF12231_consen 38 SLLLQFIQRDISSSSS-KGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCL 116 (372)
T ss_pred HHHHHHHHHHHhcccC-CCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3455555555543211 1111255777788888887765422111123455566667777667543 457888899999
Q ss_pred HHhhccccCCh---hHHHHHHHHHHhcCCC--CCCchHHHHHHHHHHHHHhcc--cccccccchHHHHHHHHHHhhhhch
Q 001585 501 GQYAHINFSDQ---NNFRKALHSVVSGLRD--PELPVRVDSVFALRSFVEACR--DLNEIRPILPQLLDEFFKLMNEVEN 573 (1049)
Q Consensus 501 ~~~~~~~f~~~---~~~~~~~~~ll~~L~d--~~~~V~~~Aa~AL~~~~~~~~--~~~~l~p~l~~il~~L~~ll~~~~~ 573 (1049)
+. ..|.+. ......+-.++..+.+ ++..|-.++..++++++...+ ......-.++.++..++...+.+-.
T Consensus 117 s~---Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~ 193 (372)
T PF12231_consen 117 SD---QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRT 193 (372)
T ss_pred Hc---CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 76 233321 2233334444444443 455688899999999998853 2222333555666666654443322
Q ss_pred hhHHHHHH--------------HHHHHccCcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHH
Q 001585 574 EDLVFTLE--------------TIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILE 639 (1049)
Q Consensus 574 ~~l~~~l~--------------~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~ 639 (1049)
. ...+.. .+.+.+...+.+- .+++.+++.+.++..+.+ ....++.+...+..+++
T Consensus 194 ~-a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~~L~~mi~~~~--------~~~~a~~iW~~~i~LL~ 262 (372)
T PF12231_consen 194 K-AISLLLEAKKCLGPNKELSKSVLEDLQRSLENG--KLIQLYCERLKEMIKSKD--------EYKLAMQIWSVVILLLG 262 (372)
T ss_pred H-HHHHHHHHHHHhChhHHHHHHHHHHhccccccc--cHHHHHHHHHHHHHhCcC--------CcchHHHHHHHHHHHhC
Confidence 1 111111 1111222222211 223333333333333211 11234445555555553
Q ss_pred hhcCChHHHHHHHhhHHHHHHHHcccchhhHHHHHHHHHHHHhhc
Q 001585 640 SVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFF 684 (1049)
Q Consensus 640 ~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~l~~~ 684 (1049)
.-. ----......+.+.+.|++......--.++.-|..+++.
T Consensus 263 ~~~---~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~ 304 (372)
T PF12231_consen 263 SSR---LDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYA 304 (372)
T ss_pred Cch---hhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 210 011224456677778888777666777888888888874
No 136
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=77.53 E-value=68 Score=35.59 Aligned_cols=126 Identities=12% Similarity=0.181 Sum_probs=65.9
Q ss_pred ccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHH
Q 001585 418 GKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAA 497 (1049)
Q Consensus 418 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~ 497 (1049)
..+++..++..+.+++... | .+...+. ..+..-.. ..+.+|+. .+..+.++++..|+
T Consensus 70 ~~d~v~yvL~li~dll~~~---~-------~~~~~~~---~~~~~~~~-----~~~~~fl~-----ll~~~D~~i~~~a~ 126 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSDD---P-------SRVELFL---ELAKQDDS-----DPYSPFLK-----LLDRNDSFIQLKAA 126 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-S---S-------SSHHHHH---HHHH-TTH-------HHHHHH-----H-S-SSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcC---H-------HHHHHHH---Hhcccccc-----hhHHHHHH-----HhcCCCHHHHHHHH
Confidence 4567888888888888652 1 1222222 22221110 12444442 45677899999999
Q ss_pred HHHHHhhccccC-ChhHHHHHHHHHHhcC----CCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHh
Q 001585 498 WVAGQYAHINFS-DQNNFRKALHSVVSGL----RDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLM 568 (1049)
Q Consensus 498 ~~l~~~~~~~f~-~~~~~~~~~~~ll~~L----~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll 568 (1049)
.+++.+....-. .......+++.+++.+ ++++..++..|+.+|..++.....+..+.. ...++.+..++
T Consensus 127 ~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL 200 (312)
T PF03224_consen 127 FILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDIL 200 (312)
T ss_dssp HHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHH
Confidence 999998653211 1111124555555554 344556778999999999987653333322 45555555555
No 137
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=77.08 E-value=79 Score=31.19 Aligned_cols=61 Identities=8% Similarity=0.080 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhc--CChHHHHHHHHHHHHHHHhh--CC-CCchhHHHHHHHHhhhhhHHHHHHHHHH
Q 001585 88 MVRDHILVFVAQ--VPPLLRVQLGECLKTIIHAD--YP-EQWPHLLDWVKHNLQDQQVYGALFVLRI 149 (1049)
Q Consensus 88 ~ir~~ll~~L~~--~~~~ir~~l~~~i~~Ia~~d--~P-~~Wp~Ll~~l~~~l~s~~~~~~L~~L~~ 149 (1049)
.||..|+.+|.. +....-+.++.+++.+|..- +| +.|++|.+-|.+...+. -..|..++..
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~~e-~~kA~~IF~~ 68 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSENE-PVKAFHIFIC 68 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhccc-hHHHHHHHHh
Confidence 478889999953 33456667777777777654 46 67999998888865332 2345444433
No 138
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.94 E-value=1.3e+02 Score=33.44 Aligned_cols=101 Identities=24% Similarity=0.296 Sum_probs=68.4
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHH--HHHHHHHH
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNF--RKALHSVV 522 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~--~~~~~~ll 522 (1049)
+...|++|+--+.-..+.+...+++ .++.. +. .++..++++++-||..|.|++|..+.-..+.++.. ...++.++
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl-~~~gg-l~-~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDL-ISLGG-LV-PLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhH-hhccC-HH-HHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 6788999999999888887543322 11212 21 23336788899999999999999865221111111 12456677
Q ss_pred hcCC-CCCCchHHHHHHHHHHHHHhcc
Q 001585 523 SGLR-DPELPVRVDSVFALRSFVEACR 548 (1049)
Q Consensus 523 ~~L~-d~~~~V~~~Aa~AL~~~~~~~~ 548 (1049)
..+. +.+..||..|-.|+..++++.+
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~ 199 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNK 199 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCc
Confidence 7776 4566799999999999999853
No 139
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=76.70 E-value=3 Score=30.30 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 001585 516 KALHSVVSGLRDPELPVRVDSVFALRSFV 544 (1049)
Q Consensus 516 ~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~ 544 (1049)
..++.++++|.+.+..|+..|+.||.+++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36788899999888899999999999876
No 140
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=76.55 E-value=75 Score=36.77 Aligned_cols=160 Identities=15% Similarity=0.174 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhc
Q 001585 403 RTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVF 482 (1049)
Q Consensus 403 R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~ 482 (1049)
|.....+|..+-.++.. ....+...+...+.+|.-.. ....-..-+|-.+|++-.++. .|.+.....|+.+.++
T Consensus 150 R~~lk~~l~~iy~k~~~-~r~~Ir~~i~~~~~~fi~e~---~~~~gI~elLeil~sii~gf~--~plk~eh~~fl~~vll 223 (409)
T PF01603_consen 150 RDYLKTILHRIYGKFPN-LRSFIRKSINNIFYRFIYET---ERHNGIAELLEILGSIINGFA--VPLKEEHKQFLRKVLL 223 (409)
T ss_dssp HHHHHHHHHHHHHH-TT-THHHHHHHHHHHHHHHHHTT---S--STHHHHHHHHHHHHTT----SS--HHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCc---ccccCHHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHH
Confidence 44445555555554422 22233344444444332111 133445667777787777653 2455667789999999
Q ss_pred cccCCCC-cchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHH
Q 001585 483 PEFSSPV-GHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLL 561 (1049)
Q Consensus 483 p~l~~~~-~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il 561 (1049)
|....++ +.....-..++.+|.+ +++.....++.+++++=--.+..=.+.-..=+..+++.. .++.+.+...++.
T Consensus 224 PLh~~~~~~~y~~~L~~~~~~f~~---kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~-~~~~f~~i~~~lf 299 (409)
T PF01603_consen 224 PLHKSPHLSSYHQQLSYCVVQFLE---KDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVL-PPEEFQKIMVPLF 299 (409)
T ss_dssp GGGGSTGGGGTHHHHHHHHHHHHH---H-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHH---hCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 9998764 4555666777777765 266788889999998876555445555666666666655 3567777778888
Q ss_pred HHHHHHhhhhc
Q 001585 562 DEFFKLMNEVE 572 (1049)
Q Consensus 562 ~~L~~ll~~~~ 572 (1049)
..+..+++...
T Consensus 300 ~~la~ci~S~h 310 (409)
T PF01603_consen 300 KRLAKCISSPH 310 (409)
T ss_dssp HHHHHHHTSSS
T ss_pred HHHHHHhCCCC
Confidence 88877776543
No 141
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=76.32 E-value=6.6 Score=45.16 Aligned_cols=112 Identities=20% Similarity=0.239 Sum_probs=76.6
Q ss_pred hhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCC
Q 001585 447 RQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR 526 (1049)
Q Consensus 447 ~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~ 526 (1049)
-.|.||..++|.++ .+... .+...|-+.-.+-++++|+.....+|-++.-. -.......+-.++.
T Consensus 567 DVrRAAViAlGfvc---~~D~~-------~lv~tvelLs~shN~hVR~g~AvaLGiacag~-----G~~~a~diL~~L~~ 631 (926)
T COG5116 567 DVRRAAVIALGFVC---CDDRD-------LLVGTVELLSESHNFHVRAGVAVALGIACAGT-----GDKVATDILEALMY 631 (926)
T ss_pred HHHHHHHHheeeeE---ecCcc-------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCC-----ccHHHHHHHHHHhh
Confidence 45677777777543 22211 12223333333557899999999999886532 12444455555667
Q ss_pred CCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh
Q 001585 527 DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED 575 (1049)
Q Consensus 527 d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~ 575 (1049)
|++--||..|+.|+..++..+ .+.+.|....|.+++.+++.+-..+.
T Consensus 632 D~~dfVRQ~AmIa~~mIl~Q~--n~~Lnp~v~~I~k~f~~vI~~Khe~g 678 (926)
T COG5116 632 DTNDFVRQSAMIAVGMILMQC--NPELNPNVKRIIKKFNRVIVDKHESG 678 (926)
T ss_pred CcHHHHHHHHHHHHHHHHhhc--CcccChhHHHHHHHHHHHHhhhhHhH
Confidence 888889999999999999886 68899999999999998887654443
No 142
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=76.21 E-value=87 Score=37.48 Aligned_cols=138 Identities=17% Similarity=0.199 Sum_probs=95.2
Q ss_pred cCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCC----chhhHH
Q 001585 399 LYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEP----YKSELE 474 (1049)
Q Consensus 399 ~~s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~----~~~~~~ 474 (1049)
...||. -..++..|.+-.|.-++... ..+..+|.+ .....|-+.+-+.|.+.....+... |+..+.
T Consensus 276 ~~Gpk~-islFl~kls~l~p~i~lrq~-~~~~~LLds--------es~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~ 345 (1128)
T COG5098 276 LSGPKD-ISLFLNKLSELSPGIMLRQY-EHFDELLDS--------ESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLN 345 (1128)
T ss_pred ccChHH-HHHHHHHHhhcCchHHHHHH-HHHHHHhcc--------cchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHH
Confidence 334554 34577777776665544432 334455543 2678899999999888877654321 222333
Q ss_pred HHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001585 475 RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 547 (1049)
Q Consensus 475 ~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~ 547 (1049)
. ++..+...|.+.+|+.|..|+.++.++.+...+-+.....+...+..+++|...+||..|..-+..++..-
T Consensus 346 ~-Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 346 D-LVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred H-HHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 3 34455556788999999999999999876433333457889999999999999999999999888887543
No 143
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.79 E-value=17 Score=45.93 Aligned_cols=167 Identities=21% Similarity=0.290 Sum_probs=105.0
Q ss_pred HHHHHHHHHh---cc-cchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhc
Q 001585 407 MDFVSELVRK---RG-KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVF 482 (1049)
Q Consensus 407 ~~ll~~L~~~---~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~ 482 (1049)
.+++..+|++ +| +.++..+.+++....... +-..+.-.+-||..++|-+.---.+ -.-.++.-++ +
T Consensus 898 ~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~----~~~sdp~Lq~AAtLaL~klM~iSa~--fces~l~llf-t--- 967 (1251)
T KOG0414|consen 898 ADLISGICEKELLYGEKSLLGRFAPIVVEGCRNP----GLFSDPELQAAATLALGKLMCISAE--FCESHLPLLF-T--- 967 (1251)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCC----CcCCCHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHH-H---
Confidence 4566677775 56 778888888888877553 2222567788888888765421110 0012333333 2
Q ss_pred cccC-CCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccch----
Q 001585 483 PEFS-SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL---- 557 (1049)
Q Consensus 483 p~l~-~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l---- 557 (1049)
.+. +|.|++|+.+...+|-++ +.| |......-+.+...|+|++.-||..|...|..++-+. --.++.++
T Consensus 968 -imeksp~p~IRsN~VvalgDla-v~f--pnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd--miKVKGql~eMA 1041 (1251)
T KOG0414|consen 968 -IMEKSPSPRIRSNLVVALGDLA-VRF--PNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILND--MIKVKGQLSEMA 1041 (1251)
T ss_pred -HHhcCCCceeeecchheccchh-hhc--ccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh--hhHhcccHHHHH
Confidence 233 789999999999888876 333 3466777778888999999999999999999998664 12223333
Q ss_pred ----------HHHHHHHHHHhhhhchhhHHHHHHHHHHHccCc
Q 001585 558 ----------PQLLDEFFKLMNEVENEDLVFTLETIVDKFGEE 590 (1049)
Q Consensus 558 ----------~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~ 590 (1049)
..+-+.+|+=++.-. ..+.++|=.|+.++++.
T Consensus 1042 ~cl~D~~~~IsdlAk~FF~Els~k~-n~iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1042 LCLEDPNAEISDLAKSFFKELSSKG-NTIYNLLPDILSRLSNG 1083 (1251)
T ss_pred HHhcCCcHHHHHHHHHHHHHhhhcc-cchhhhchHHHHhhccC
Confidence 233333333333222 35666777777766544
No 144
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=75.22 E-value=4.4 Score=52.13 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=59.0
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhc
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 524 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~ 524 (1049)
+|..|.+|..++|.+... . -+ ..+.+.|.++++.+|..|.+.||++.. + ....+.+...
T Consensus 820 d~~VR~~Aa~aL~~l~~~----~----a~-----~~L~~~L~D~~~~VR~~A~~aL~~~~~----~----~~a~~~L~~a 878 (897)
T PRK13800 820 AWQVRQGAARALAGAAAD----V----AV-----PALVEALTDPHLDVRKAAVLALTRWPG----D----PAARDALTTA 878 (897)
T ss_pred ChHHHHHHHHHHHhcccc----c----hH-----HHHHHHhcCCCHHHHHHHHHHHhccCC----C----HHHHHHHHHH
Confidence 799999999999875421 1 01 345667789999999999999999621 2 3345666788
Q ss_pred CCCCCCchHHHHHHHHHH
Q 001585 525 LRDPELPVRVDSVFALRS 542 (1049)
Q Consensus 525 L~d~~~~V~~~Aa~AL~~ 542 (1049)
++|.+.-||..|+.||..
T Consensus 879 l~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 879 LTDSDADVRAYARRALAH 896 (897)
T ss_pred HhCCCHHHHHHHHHHHhh
Confidence 889999999999999863
No 145
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=74.34 E-value=18 Score=38.63 Aligned_cols=122 Identities=16% Similarity=0.184 Sum_probs=80.5
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCC-C-CcchhHHHHHHHHHhhccccCChhHHHHHHHHHH
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSS-P-VGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVV 522 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~-~-~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll 522 (1049)
+...|+-|+.++..++..... ...++.+ ..+|..+..+ + +..++-.+..++...+- .......+...++.++
T Consensus 67 ~~~vr~~AL~aL~Nls~~~en----~~~Ik~~-i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv-~~~~~~~l~~~i~~ll 140 (254)
T PF04826_consen 67 NPSVREKALNALNNLSVNDEN----QEQIKMY-IPQVCEETVSSPLNSEVQLAGLRLLTNLTV-TNDYHHMLANYIPDLL 140 (254)
T ss_pred ChHHHHHHHHHHHhcCCChhh----HHHHHHH-HHHHHHHHhcCCCCCHHHHHHHHHHHccCC-CcchhhhHHhhHHHHH
Confidence 557788888888877654322 2334443 3445554433 2 56788889999988863 3223356778889999
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHhhhhchhh
Q 001585 523 SGLRDPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEVENED 575 (1049)
Q Consensus 523 ~~L~d~~~~V~~~Aa~AL~~~~~~~~-~~~~l~p~l~~il~~L~~ll~~~~~~~ 575 (1049)
.+|...+..+|.++..+|.++..+.. .++.+.. +.+..++.+++.-+..+
T Consensus 141 ~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~---q~~~~~~~Lf~~~~~~~ 191 (254)
T PF04826_consen 141 SLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSA---QVLSSFLSLFNSSESKE 191 (254)
T ss_pred HHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhc---cchhHHHHHHccCCccH
Confidence 99988788899999999999988754 2333443 34566666776644443
No 146
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=72.95 E-value=1.4e+02 Score=32.17 Aligned_cols=160 Identities=11% Similarity=0.147 Sum_probs=79.9
Q ss_pred HHhhHHHHHHHHcccchhhHHHHHHHHHHHHhhc------CCCCCHHHHHHHHHHHHHHhhhH-----hhhHhhhHHhhh
Q 001585 651 IEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFF------SPTISLEMWSLWPLMMEALADWA-----IDFFPNILVPLD 719 (1049)
Q Consensus 651 l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~l~~~------~~~isp~l~~l~~~l~~~~~~~~-----~~~l~~~~~~L~ 719 (1049)
+..-++|++... .+...++..++.|+..++.- ..+-++.-+..++.+.+.+.+.. ...+..++..+.
T Consensus 42 v~~DLiPiL~~~--~~~~~l~~~~l~LLV~LT~P~~~~~~~~~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~~~~~l~ 119 (266)
T PF04821_consen 42 VQKDLIPILISY--KDDDKLFLACLRLLVNLTWPIELLVESQPKDKNQRRNIPELLKYLQSYKEAFLDPRVLKALIRLLL 119 (266)
T ss_pred hhhhHHHHHHhc--cCchHHHHHHHHHHHHhCCCHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 445678877766 34667888899999888741 11123344555555544443221 123444444444
Q ss_pred hHhhcCcccccccCCcchHHHHHHHHHHHhcCCCCCCccc--CchhhHHHHHHHhcccCchhchHHHHHHHHHHHHhhhh
Q 001585 720 NYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDI--EPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEK 797 (1049)
Q Consensus 720 ~~i~~~~~~~l~~~~~~~~~~i~~i~~~~l~~~~~~~~~~--~~a~~ll~~ii~~~~~~~~~~l~~il~~~l~~l~~~~~ 797 (1049)
..+.......-. .+...++.++.++.+++.-+....... .....+-..++..+.. ..++..++...++...
T Consensus 120 ~~l~~~~~~rt~-~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~------~~v~~lLL~l~s~~~~ 192 (266)
T PF04821_consen 120 PPLEKDWEDRTE-RDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFE------SGVLDLLLTLASSPQE 192 (266)
T ss_pred HHhhcccccCCH-HHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHH------cCHHHHHHHHHhCccc
Confidence 444333222111 122467888888888876432221111 1223333444443322 1344555555555433
Q ss_pred hHHHHHHHHHHHHHHhh-CHHHH
Q 001585 798 SYLKCLLVQVIADALYY-NSSLT 819 (1049)
Q Consensus 798 ~~~~~~~l~v~~~~~~~-~p~~~ 819 (1049)
..+...++++|..++-. +|..+
T Consensus 193 ~~f~~~lLEIi~ll~k~~~p~~L 215 (266)
T PF04821_consen 193 SDFNLLLLEIIYLLFKGQDPESL 215 (266)
T ss_pred cchhhHHHHHHHHHHcCCCHHHH
Confidence 45666777777776532 34433
No 147
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=72.68 E-value=3 Score=44.04 Aligned_cols=8 Identities=13% Similarity=0.106 Sum_probs=3.8
Q ss_pred chh-hHHHH
Q 001585 941 DEA-DSIRL 948 (1049)
Q Consensus 941 ~~~-~~~~~ 948 (1049)
++| .+.||
T Consensus 206 ~DYna~~YF 214 (233)
T PF11705_consen 206 DDYNAENYF 214 (233)
T ss_pred CCcchhccC
Confidence 455 44444
No 148
>PF05536 Neurochondrin: Neurochondrin
Probab=72.62 E-value=2.2e+02 Score=34.27 Aligned_cols=152 Identities=11% Similarity=0.110 Sum_probs=86.4
Q ss_pred HHHHHHHHcccchh-hHHHHHHHHHHHHhhcCCCCCHHHH--HHHHHHHHHHhhhHhhhHhhhHHhhhhHhhcCcccccc
Q 001585 655 LLPIMRRMLTTDGQ-EVFEEVLEIVSYMTFFSPTISLEMW--SLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLT 731 (1049)
Q Consensus 655 ~~p~i~~~l~~~~~-~~~~~~l~ll~~l~~~~~~isp~l~--~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~ 731 (1049)
.+|++..++..... ...+++++++..+..+.. -...+. ...+.++..+.+ ..-.....+.++.+.+.......+.
T Consensus 99 ~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~-G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~ 176 (543)
T PF05536_consen 99 RIPLLLEILSSSSDLETVDDALQCLLAIASSPE-GAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWA 176 (543)
T ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcH-hHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhh
Confidence 36888888876666 899999999999984322 112222 234455555433 1223445566666655554433332
Q ss_pred cCCcchHHHHHHHHHHHhcCCCCCCcccCchhhHHHHHHHhccc---C---chhchHHHHHHHHHHHHhhhhhHHHHHHH
Q 001585 732 CKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG---Q---VDHWVEPYLRITVERLRRAEKSYLKCLLV 805 (1049)
Q Consensus 732 ~~~~~~~~~i~~i~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~---~---~~~~l~~il~~~l~~l~~~~~~~~~~~~l 805 (1049)
..+..+..++.-+.+.+... ....+..+|.++..++...+. . -..++..+...+-..|++.-++.-+...+
T Consensus 177 -~~~~~l~~il~~La~~fs~~--~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al 253 (543)
T PF05536_consen 177 -EDSQLLHSILPSLARDFSSF--HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPAL 253 (543)
T ss_pred -hhHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 23344555655555555432 334456678888888888742 1 12466667666666676644555555544
Q ss_pred HHHHHH
Q 001585 806 QVIADA 811 (1049)
Q Consensus 806 ~v~~~~ 811 (1049)
.+.+.+
T Consensus 254 ~Laa~L 259 (543)
T PF05536_consen 254 NLAASL 259 (543)
T ss_pred HHHHHH
Confidence 444443
No 149
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=72.56 E-value=29 Score=34.20 Aligned_cols=127 Identities=17% Similarity=0.256 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCC-----CCcchhHHHH
Q 001585 423 QKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSS-----PVGHLRAKAA 497 (1049)
Q Consensus 423 ~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~-----~~~~lr~ra~ 497 (1049)
+.+++.+.+++... .+|..|..++.++|.++.- .|| -.+.+...... ...-......
T Consensus 9 P~LL~~L~~iLk~e-------~s~~iR~E~lr~lGilGAL----DP~-------~~k~~~~~~~~~~~~~~~~~~~~~~l 70 (160)
T PF11865_consen 9 PELLDILLNILKTE-------QSQSIRREALRVLGILGAL----DPY-------KHKSIQKSLDSKSSENSNDESTDISL 70 (160)
T ss_pred HHHHHHHHHHHHhC-------CCHHHHHHHHHHhhhcccc----CcH-------HHhcccccCCccccccccccchhhHH
Confidence 44666666666542 2699999999999998742 122 11122221111 1111122111
Q ss_pred HHHHHhhccccCChh-HHHHHHHHHHhcCCCCCCc-hHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhch
Q 001585 498 WVAGQYAHINFSDQN-NFRKALHSVVSGLRDPELP-VRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN 573 (1049)
Q Consensus 498 ~~l~~~~~~~f~~~~-~~~~~~~~ll~~L~d~~~~-V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~ 573 (1049)
... .. ....++ +..-++..++..|+|+... -+..++.|+-.++... ...-.||++.++..++..+++.+.
T Consensus 71 ~~~-~~---~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l--~~~cv~~L~~viP~~l~~i~~~~~ 142 (160)
T PF11865_consen 71 PMM-GI---SPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSL--GLKCVPYLPQVIPIFLRVIRTCPD 142 (160)
T ss_pred hhc-cC---CCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc--CcCchhHHHHHhHHHHHHHHhCCH
Confidence 111 11 111223 3456778888889987665 4556888888888664 333489999999999999987654
No 150
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=71.25 E-value=8.6 Score=33.88 Aligned_cols=59 Identities=15% Similarity=0.313 Sum_probs=41.5
Q ss_pred ccCCHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHh
Q 001585 398 DLYSPRTASMDFVSELVRKRGKE---NLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDK 462 (1049)
Q Consensus 398 d~~s~R~aA~~ll~~L~~~~~~~---~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~ 462 (1049)
+.|..|.-|++++..++++|+.. .-+.+...+...+. +|.. ++..++||+..+..++..
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~----d~~~--~~~t~YGAi~gL~~lG~~ 79 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALL----DPKK--PLGTHYGAIVGLSALGPE 79 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999752 22334433333333 3332 788999999999988643
No 151
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=71.24 E-value=10 Score=25.57 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=22.6
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHh
Q 001585 91 DHILVFVAQVPPLLRVQLGECLKTIIHA 118 (1049)
Q Consensus 91 ~~ll~~L~~~~~~ir~~l~~~i~~Ia~~ 118 (1049)
..+++.+.+++..||...+.+++.|+++
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 4567788889999999999999998864
No 152
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=69.16 E-value=1.6e+02 Score=33.95 Aligned_cols=151 Identities=13% Similarity=0.198 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHHccCc
Q 001585 512 NNFRKALHSVVSGLRD-PELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEE 590 (1049)
Q Consensus 512 ~~~~~~~~~ll~~L~d-~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~ 590 (1049)
+++.+++..++..|.| .+...+.-|-+-|+.+|.+. +..+..+.+..+.+++........+....+-+++..... .
T Consensus 325 q~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q--~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~la-s 401 (516)
T KOG2956|consen 325 QHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQ--PARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLA-S 401 (516)
T ss_pred HHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhc--hHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH-h
Confidence 5788899999999988 67778999999999999984 778888888888888887776655443333333332222 1
Q ss_pred ccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccchhhH
Q 001585 591 MAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEV 670 (1049)
Q Consensus 591 i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~ 670 (1049)
..|. ..+..+++.++ . +++| .+..++.+++.+++.+. .+-+..+.+-+.|.+-...+...+..
T Consensus 402 ~~P~--~~I~~i~~~Il----t-~D~~--------~~~~~iKm~Tkl~e~l~--~EeL~~ll~diaP~~iqay~S~SS~V 464 (516)
T KOG2956|consen 402 HLPL--QCIVNISPLIL----T-ADEP--------RAVAVIKMLTKLFERLS--AEELLNLLPDIAPCVIQAYDSTSSTV 464 (516)
T ss_pred hCch--hHHHHHhhHHh----c-Ccch--------HHHHHHHHHHHHHhhcC--HHHHHHhhhhhhhHHHHHhcCchHHh
Confidence 2232 22223332222 1 2222 24467899999999885 23344455666776666665555544
Q ss_pred HHHHHHHHHHHh
Q 001585 671 FEEVLEIVSYMT 682 (1049)
Q Consensus 671 ~~~~l~ll~~l~ 682 (1049)
.-.+.-.+-.++
T Consensus 465 RKtaVfCLVamv 476 (516)
T KOG2956|consen 465 RKTAVFCLVAMV 476 (516)
T ss_pred hhhHHHhHHHHH
Confidence 444443444443
No 153
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.97 E-value=34 Score=36.95 Aligned_cols=136 Identities=13% Similarity=0.162 Sum_probs=81.2
Q ss_pred cCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHH
Q 001585 399 LYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLV 478 (1049)
Q Consensus 399 ~~s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~ 478 (1049)
.|-...-+.+.+..|+...+....+.+-..|..+..+.. ++ .--.-.+|+..++-+...+.+. +...++. +.
T Consensus 101 dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslK-Nl----RS~VsraA~~t~~difs~ln~~--i~~~ld~-lv 172 (334)
T KOG2933|consen 101 DWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLK-NL----RSAVSRAACMTLADIFSSLNNS--IDQELDD-LV 172 (334)
T ss_pred HHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc-Ch----HHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HH
Confidence 344556677788888876655444444445555554432 11 1233455566666666554332 1112222 22
Q ss_pred HhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001585 479 QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 547 (1049)
Q Consensus 479 ~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~ 547 (1049)
..++---...+.|+|..|-..+-...... .-..+++.+..++++.+..++..|+.++.+++...
T Consensus 173 ~~Ll~ka~~dnrFvreda~kAL~aMV~~v-----tp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl 236 (334)
T KOG2933|consen 173 TQLLHKASQDNRFVREDAEKALVAMVNHV-----TPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRL 236 (334)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHHhcc-----ChHHHHHHHHHHHhhhchhhhhhhhccccccceec
Confidence 22221112357899999999997765432 34678888888899989999999998888776543
No 154
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=67.97 E-value=30 Score=44.10 Aligned_cols=171 Identities=15% Similarity=0.144 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHhcccchHH---HHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcC-CCchhhHHHHHH
Q 001585 403 RTASMDFVSELVRKRGKENLQ---KFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQT-EPYKSELERMLV 478 (1049)
Q Consensus 403 R~aA~~ll~~L~~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~-~~~~~~~~~~l~ 478 (1049)
|+.|.-+|..+++.+|...+. .+..++..-|+.+... + +.-+.-++..-...... ....+ +-+. .
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~-----~----d~~~~s~~vf~s~~~~m~s~l~~-~~~~-l 818 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDG-----N----DEFLSSFEVFNSLAPLMHSFLHP-LGSL-L 818 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCC-----C----cchhhhHHHHHHHHHhhhhhhhh-hhhh-h
Confidence 788899999999999875543 3334444444443211 1 11111111111111000 00011 1111 1
Q ss_pred HhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchH
Q 001585 479 QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILP 558 (1049)
Q Consensus 479 ~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~ 558 (1049)
..++..+.++++.+|..|..++|-+...- .-+....++..++..+.+.+..++-.++..+-..+... ....+.||.+
T Consensus 819 ~~l~~~~~s~~~a~r~~~ar~i~~~~k~~--~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~-l~~~l~~~~~ 895 (1549)
T KOG0392|consen 819 PRLFFFVRSIHIAVRYAAARCIGTMFKSA--TRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAV-LMVGLVPYNP 895 (1549)
T ss_pred hHHHHhcccchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHh-hcccccccce
Confidence 23333445789999999999999886532 33678899999999999988878776666555554443 3667889999
Q ss_pred HHHHHHHHHhhhhch---hhHHHHHHHHHHHc
Q 001585 559 QLLDEFFKLMNEVEN---EDLVFTLETIVDKF 587 (1049)
Q Consensus 559 ~il~~L~~ll~~~~~---~~l~~~l~~iv~~~ 587 (1049)
-++.-|+..+..... +....+...++-..
T Consensus 896 Llv~pllr~msd~~d~vR~aat~~fa~lip~~ 927 (1549)
T KOG0392|consen 896 LLVVPLLRRMSDQIDSVREAATKVFAKLIPLL 927 (1549)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhccc
Confidence 999889888865432 12444555555544
No 155
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.61 E-value=3.1e+02 Score=33.85 Aligned_cols=173 Identities=14% Similarity=0.201 Sum_probs=86.0
Q ss_pred cccCHHHHHHHHHHHHhhcCCchhhhhchhhHHHHHHHHhhhccccChhhHhhhhcCHHHHHhHhc------Ccc-cccC
Q 001585 328 GYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGY------DII-EDLY 400 (1049)
Q Consensus 328 ~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~------d~~-~d~~ 400 (1049)
.|..+.++..+++-+..++++...-..++.. . ..+|..+|-.| .||...+ ..+ ...+
T Consensus 73 D~~D~E~ik~~LdTl~il~~~dd~~~v~dds-------------~-qsdd~g~~iae--~fik~qd~I~lll~~~e~~DF 136 (970)
T KOG0946|consen 73 DYMDPEIIKYALDTLLILTSHDDSPEVMDDS-------------T-QSDDLGLWIAE--QFIKNQDNITLLLQSLEEFDF 136 (970)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCcchhhcccc-------------h-hhhHHHHHHHH--HHHcCchhHHHHHHHHHhhch
Confidence 3667788888888888777665321111110 0 12333333321 1222211 111 1246
Q ss_pred CHHHHHHHHHHHHHHhcccchHHHHHH------HHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHH
Q 001585 401 SPRTASMDFVSELVRKRGKENLQKFIQ------FIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELE 474 (1049)
Q Consensus 401 s~R~aA~~ll~~L~~~~~~~~~~~~~~------~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~ 474 (1049)
-+|..|..+|..+..++|.++-..++. -+...|... .-..|..+++++..+......... ..-|+
T Consensus 137 ~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds--------rE~IRNe~iLlL~eL~k~n~~IQK-lVAFE 207 (970)
T KOG0946|consen 137 HVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS--------REPIRNEAILLLSELVKDNSSIQK-LVAFE 207 (970)
T ss_pred hhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh--------hhhhchhHHHHHHHHHccCchHHH-HHHHH
Confidence 689999999999999998654333322 222223221 224577777787777655332111 12233
Q ss_pred HHHHH---hhccccCCCCcchhHHHHHHHHHhhccccCChhHH--HHHHHHHHhcC
Q 001585 475 RMLVQ---HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNF--RKALHSVVSGL 525 (1049)
Q Consensus 475 ~~l~~---~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~--~~~~~~ll~~L 525 (1049)
+.|.. .|-.+=....+++--.|+.++-.+-...-+|++++ ...+|.+.+.|
T Consensus 208 NaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL 263 (970)
T KOG0946|consen 208 NAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLL 263 (970)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhc
Confidence 33322 12112223345777788877766644333344332 23455555444
No 156
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=66.47 E-value=21 Score=40.43 Aligned_cols=121 Identities=14% Similarity=0.170 Sum_probs=73.8
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCC--chhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhc---cccCChhHHHHHHH
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEP--YKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAH---INFSDQNNFRKALH 519 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~--~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~---~~f~~~~~~~~~~~ 519 (1049)
+.|.++-++.++|.+...+....+ ...-++.=..+-+--.......-+|..||+++|..-+ ..|++-.....+++
T Consensus 497 ~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~ 576 (728)
T KOG4535|consen 497 KDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFN 576 (728)
T ss_pred hhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHH
Confidence 668888888888888766542111 1111111111111111112245699999999999743 23444456788999
Q ss_pred HHHhcCCC-CCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhh
Q 001585 520 SVVSGLRD-PELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMN 569 (1049)
Q Consensus 520 ~ll~~L~d-~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~ 569 (1049)
.+...+.+ .+..||+.||.||..-- .++....+++-....++..+.
T Consensus 577 ~L~~Lv~~~~NFKVRi~AA~aL~vp~----~re~~~d~~~Lsw~~lv~aLi 623 (728)
T KOG4535|consen 577 ALTSLVTSCKNFKVRIRAAAALSVPG----KREQYGDQYALSWNALVTALQ 623 (728)
T ss_pred HHHHHHHHhccceEeehhhhhhcCCC----CcccchhHHhHHHHHHHHHHH
Confidence 99999875 68899999999986321 344555555666666665553
No 157
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=66.07 E-value=2.2e+02 Score=31.66 Aligned_cols=131 Identities=18% Similarity=0.195 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHhcccCCCCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHH
Q 001585 139 QVYGALFVLRILSRKYEYQPTDSTSMKGYRIYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICK 218 (1049)
Q Consensus 139 ~~~~~L~~L~~i~k~~~~~~t~~~~~~~~r~~~~~~~~~~~~l~~i~~~~~p~Ll~~~~~~~~~~~~~~~~~~~~~~~lk 218 (1049)
+....|.++..++++++. .+ ...+..+++.+|.+.+.+... +-. +.++.+....|
T Consensus 88 r~~evL~l~~~ii~kl~~--------------~~-----~~~v~~I~~~vf~~Tl~MI~~----d~~--~yPe~r~~ff~ 142 (319)
T PF08767_consen 88 REPEVLSLMATIINKLGE--------------LI-----QPQVPQILEAVFECTLPMINK----DFE--EYPEHRVNFFK 142 (319)
T ss_dssp S-HHHHHHHHHHHHHHGG--------------GC-----CCCHHHHHHHHHHHHHHHHSS----TSS--SSHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHH--------------hh-----hhhHHHHHHHHHHHHHHHHHh----hhh--hChHHHHHHHH
Confidence 457889999999999842 11 124566777777666655432 111 12334433333
Q ss_pred HHHHhhhc------cCCcccCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchHHHHHHHHHHHHHHHHHhCCCC
Q 001585 219 IFWSSIYL------EIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLK 292 (1049)
Q Consensus 219 ~~~~~~~~------~lp~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~ 292 (1049)
.++.++.. .+|+ +.+...+..+...+..+. ..+...+++++..+++...+
T Consensus 143 LL~~i~~~~f~~l~~lp~-----~~f~~~idsi~wg~kh~~-----------------~~I~~~~L~~l~~ll~~~~~-- 198 (319)
T PF08767_consen 143 LLRAINEHCFPALLQLPP-----EQFKLVIDSIVWGFKHTN-----------------REISETGLNILLELLNNVSK-- 198 (319)
T ss_dssp HHHHHHHHHTHHHHHS-H-----HHHHHHHHHHHHHHTSSS-----------------HHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhHHHHHcCCH-----HHHHHHHHHHHHHhCCCc-----------------HHHHHHHHHHHHHHHHHHHh--
Confidence 33333321 2333 667777777766665431 12334567777777776533
Q ss_pred CCChhhHHHHHHHHHhhHHHHHHHHHHHHH
Q 001585 293 LQNPENRAFAQMFQKNYAGKILECHLNLLN 322 (1049)
Q Consensus 293 ~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~ 322 (1049)
.-.+++..|...|.-.+++.++..+.
T Consensus 199 ----~~~~~~~~F~~~y~~~il~~if~vlt 224 (319)
T PF08767_consen 199 ----TNPEFANQFYQQYYLDILQDIFSVLT 224 (319)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11345555655566666666666654
No 158
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=65.67 E-value=23 Score=32.25 Aligned_cols=77 Identities=13% Similarity=0.233 Sum_probs=59.3
Q ss_pred CcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCC--CCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHH
Q 001585 489 VGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRD--PELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFK 566 (1049)
Q Consensus 489 ~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d--~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ 566 (1049)
...-|.+++..++.+-+. ...+...+.|-++.+|+. ..+.++..|+.|...|+... ..+.+.|++++++-.+++
T Consensus 28 ~~~ek~~~l~si~~lI~~---~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L-~~~~l~~ll~~~~~~l~~ 103 (107)
T PF08064_consen 28 PIPEKKRALRSIEELIKL---GGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTL-DEEDLGPLLDQIFAILLP 103 (107)
T ss_pred CHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHH
Confidence 446888999999988652 224567777777777764 23369999999999999987 478899999999888877
Q ss_pred Hhh
Q 001585 567 LMN 569 (1049)
Q Consensus 567 ll~ 569 (1049)
..+
T Consensus 104 ~~~ 106 (107)
T PF08064_consen 104 LWD 106 (107)
T ss_pred hcc
Confidence 653
No 159
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=65.35 E-value=37 Score=34.73 Aligned_cols=134 Identities=19% Similarity=0.281 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHH-----
Q 001585 574 EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLF----- 648 (1049)
Q Consensus 574 ~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~~~~~~----- 648 (1049)
+.+..++.++.++++..-.|+...++..|.+ .-. .. .......+=+|++..+++++ |+.+
T Consensus 18 ~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~----lr~-~~--------~f~~~~~~e~~lgaAi~amG--pe~vL~~lP 82 (198)
T PF08161_consen 18 PEVLNVLSALFEKLGERSSPLLKPILKTLGD----LRE-SE--------DFSFRKELEQVLGAAIRAMG--PEQVLSILP 82 (198)
T ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHHHH----HHc-CC--------CcchHHHHHHHHHHHHHHCC--HHHHHHHCC
Confidence 4577788888888887766766666665553 111 11 01123345567777777765 2111
Q ss_pred ---------HHHHhhHHHHHHHHcccc-hhhHHHHHHHHHHHHhhcC-------C--------CCCHHHHHHHHHHHHHH
Q 001585 649 ---------VQIEPTLLPIMRRMLTTD-GQEVFEEVLEIVSYMTFFS-------P--------TISLEMWSLWPLMMEAL 703 (1049)
Q Consensus 649 ---------~~l~~~~~p~i~~~l~~~-~~~~~~~~l~ll~~l~~~~-------~--------~isp~l~~l~~~l~~~~ 703 (1049)
..-..-++|++...+.+. -..|.++.+-+...+-... . .+-..+|.++|..++.-
T Consensus 83 Lnl~~~~~~~~~raWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P 162 (198)
T PF08161_consen 83 LNLDNADDSQPGRAWLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYP 162 (198)
T ss_pred CCccCCCcCCcccchhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCc
Confidence 111234678888876553 3456666666655543321 1 12234677777666543
Q ss_pred hhhHhhhHhhhHHhhhhHhh
Q 001585 704 ADWAIDFFPNILVPLDNYIS 723 (1049)
Q Consensus 704 ~~~~~~~l~~~~~~L~~~i~ 723 (1049)
.+. .+.++.+...|.+.+.
T Consensus 163 ~D~-~~~F~~~a~~L~~~L~ 181 (198)
T PF08161_consen 163 TDL-AESFPSFAKLLGNALY 181 (198)
T ss_pred ccH-HHHHHHHHHHHHHHHh
Confidence 322 2344666666655443
No 160
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=64.23 E-value=3.6e+02 Score=33.51 Aligned_cols=209 Identities=12% Similarity=0.153 Sum_probs=100.7
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCchhhHHHH-HHHhhccccCCCCcchhHHHHHHHHHhhccc-cCChhHHHHHHHHHH
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEPYKSELERM-LVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN-FSDQNNFRKALHSVV 522 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~~~~~~~~~-l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~-f~~~~~~~~~~~~ll 522 (1049)
+-.....++.++..++..-. .+..|... +...+.+.+.++ -.|.-|+.++.+.+... .+.--....+++.++
T Consensus 344 ~~~l~~~aLrlL~NLSfd~~----~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~ 417 (708)
T PF05804_consen 344 NEDLVNVALRLLFNLSFDPE----LRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLM 417 (708)
T ss_pred CHHHHHHHHHHHHHhCcCHH----HHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHH
Confidence 44678888888888875421 11111110 011233334433 23444666665554311 111111234677777
Q ss_pred hcCC-CCCCchHHHHHHHHHHHHHhcccccccc--cchHHHHHHHHHHhhhhchhhHHHHHHHHHHHcc---CcccccHH
Q 001585 523 SGLR-DPELPVRVDSVFALRSFVEACRDLNEIR--PILPQLLDEFFKLMNEVENEDLVFTLETIVDKFG---EEMAPYAL 596 (1049)
Q Consensus 523 ~~L~-d~~~~V~~~Aa~AL~~~~~~~~~~~~l~--p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~---~~i~p~~~ 596 (1049)
+.|. .++..|...+...+.++..+....+.+. .-++.++...+ .....-++.++..+...-+ ..+.+|..
T Consensus 418 ~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~----~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~ 493 (708)
T PF05804_consen 418 QMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRAL----KTRDPLLLKLIRNISQHDGPLKELFVDFIG 493 (708)
T ss_pred HHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHH----hcccHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 7654 4566677767666666665543222222 22333333332 2222335555555544321 11223333
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHH-hhHHHHHHHHcccch--hhHHHH
Q 001585 597 GLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIE-PTLLPIMRRMLTTDG--QEVFEE 673 (1049)
Q Consensus 597 ~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~~~~~~~~l~-~~~~p~i~~~l~~~~--~~~~~~ 673 (1049)
+++. .+.+.+ + ....+||++++-..--.+.....-+. ..++|.+...|.+.. .++.-+
T Consensus 494 ~L~~--------~v~~~~-~----------ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE 554 (708)
T PF05804_consen 494 DLAK--------IVSSGD-S----------EEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLE 554 (708)
T ss_pred HHHH--------HhhcCC-c----------HHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHH
Confidence 3332 222221 1 12567888877665322222222333 478999999997543 356666
Q ss_pred HHHHHHHHh
Q 001585 674 VLEIVSYMT 682 (1049)
Q Consensus 674 ~l~ll~~l~ 682 (1049)
+..+++++.
T Consensus 555 ~Vi~~gtla 563 (708)
T PF05804_consen 555 VVILLGTLA 563 (708)
T ss_pred HHHHHHHHH
Confidence 666666655
No 161
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=63.08 E-value=36 Score=30.97 Aligned_cols=85 Identities=9% Similarity=0.006 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcC--CCCCCcccCchhhHHHHHHHhcccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhCH
Q 001585 739 QSLWSMVSSIMAD--KNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNS 816 (1049)
Q Consensus 739 ~~i~~i~~~~l~~--~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~l~~l~~~~~~~~~~~~l~v~~~~~~~~p 816 (1049)
=.++..+...+.+ ...+..++..+.+-++.++..+++.+..+.|+|+..+-..+..++-......+...|.+. -++
T Consensus 10 Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~--L~~ 87 (107)
T PF08064_consen 10 LGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKT--LDE 87 (107)
T ss_pred HHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHH--CCH
Confidence 3444555555655 233444567788888999987777788888888777766665544333344444555554 356
Q ss_pred HHHHHHHHh
Q 001585 817 SLTLSILHK 825 (1049)
Q Consensus 817 ~~~l~~L~~ 825 (1049)
..+..++++
T Consensus 88 ~~l~~ll~~ 96 (107)
T PF08064_consen 88 EDLGPLLDQ 96 (107)
T ss_pred HHHHHHHHH
Confidence 666666653
No 162
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=62.97 E-value=1.4e+02 Score=33.66 Aligned_cols=93 Identities=19% Similarity=0.271 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccchhhHHHHHHHHHHHH-----h-hcCCCCCHHHHHHHHHHHHHH
Q 001585 630 CLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYM-----T-FFSPTISLEMWSLWPLMMEAL 703 (1049)
Q Consensus 630 ~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~l-----~-~~~~~isp~l~~l~~~l~~~~ 703 (1049)
.+.-|..|+++++ |.-+..+..-++..|..|++.+..-..|.++.+|+.= + ++...+-| -+||.+++.-
T Consensus 319 FL~ElEEILe~ie--p~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilP---iiFpaLyr~s 393 (457)
T KOG2085|consen 319 FLNELEEILEVIE--PSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILP---IVFPALYRNS 393 (457)
T ss_pred eHhhHHHHHHhcC--HHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeee---hhhHHHHHHH
Confidence 4666777888764 6667777777778888899888888899999999862 2 33344433 4577777665
Q ss_pred hh-hHhhhHhhhHHhhhhHhhcCcc
Q 001585 704 AD-WAIDFFPNILVPLDNYISRGTA 727 (1049)
Q Consensus 704 ~~-~~~~~l~~~~~~L~~~i~~~~~ 727 (1049)
++ |......-+...+..|+..++.
T Consensus 394 k~hWN~~i~~l~~nvlk~f~emd~~ 418 (457)
T KOG2085|consen 394 KSHWNQAIHNLILNVLKTFMEMDPK 418 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 43 4443444445555555555443
No 163
>PF05536 Neurochondrin: Neurochondrin
Probab=62.94 E-value=3.4e+02 Score=32.74 Aligned_cols=167 Identities=12% Similarity=0.148 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccchhhHHHHHH
Q 001585 596 LGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVL 675 (1049)
Q Consensus 596 ~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l 675 (1049)
++++.++. .|.+++.+..+ .....-+++|+..|. +-. .+...-++.-.+|.+..++.+ .....+.++
T Consensus 94 ~~~~~~IP-~Lle~l~~~s~--------~~~v~dalqcL~~Ia-s~~--~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 94 PQMVSRIP-LLLEILSSSSD--------LETVDDALQCLLAIA-SSP--EGAKALLESGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred HHHHHHHH-HHHHHHHcCCc--------hhHHHHHHHHHHHHH-cCc--HhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence 45665554 56666654331 123446778887777 321 122222344566777777654 445678899
Q ss_pred HHHHHHhhcCC-----CCCHHHHHHHHHHHHHHhhhHhhhHhhhHHhhhhHhhcCccc-ccccCCcchHHHHHHHHHHHh
Q 001585 676 EIVSYMTFFSP-----TISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAH-FLTCKEPDYQQSLWSMVSSIM 749 (1049)
Q Consensus 676 ~ll~~l~~~~~-----~isp~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~-~l~~~~~~~~~~i~~i~~~~l 749 (1049)
.+|..++.... .-+..+..+.+.+...+......---+++..|.+|+...+.. .....++.....+..-+..++
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 99998876432 112233345555544443211111123467777777666311 111145567888888888888
Q ss_pred cCCCCCCcccCchhhHHHHHHHhcccC
Q 001585 750 ADKNLEDGDIEPAPKLIEVVFQNCKGQ 776 (1049)
Q Consensus 750 ~~~~~~~~~~~~a~~ll~~ii~~~~~~ 776 (1049)
.++ .....+..+..+...++..++.+
T Consensus 241 ~sr-~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 241 QSR-LTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred hcC-CCHHHHHHHHHHHHHHHHHhChH
Confidence 765 44555677888999998887765
No 164
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=62.55 E-value=50 Score=31.59 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=34.6
Q ss_pred cchhHHHHHHHHHhhccccCChhHH--HHHHHHHHhcCCCCCCchHHHHHHHH
Q 001585 490 GHLRAKAAWVAGQYAHINFSDQNNF--RKALHSVVSGLRDPELPVRVDSVFAL 540 (1049)
Q Consensus 490 ~~lr~ra~~~l~~~~~~~f~~~~~~--~~~~~~ll~~L~d~~~~V~~~Aa~AL 540 (1049)
+-+...++.+++.|..+. +.+.. ..+++.+++.|++++ ++..|+.+|
T Consensus 100 ~~~~~~~L~~l~s~i~~~--~~~~i~~~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWI--PIELIINSNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--CHHHhccHHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 788889999999997753 44322 237888899897665 488888876
No 165
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.53 E-value=3.7e+02 Score=33.09 Aligned_cols=136 Identities=14% Similarity=0.133 Sum_probs=85.4
Q ss_pred cCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcC-CCchhhHHHHH
Q 001585 399 LYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQT-EPYKSELERML 477 (1049)
Q Consensus 399 ~~s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~-~~~~~~~~~~l 477 (1049)
.+.-+++..+.+-++++..+. .-...+..+.+.+. +....+-+.+.++.++..+... .| .....
T Consensus 405 g~e~K~aivd~Ii~iie~~pd-sKe~~L~~LCefIE----------Dce~~~i~~rILhlLG~EgP~a~~P--skyir-- 469 (865)
T KOG1078|consen 405 GFEFKRAIVDAIIDIIEENPD-SKERGLEHLCEFIE----------DCEFTQIAVRILHLLGKEGPKAPNP--SKYIR-- 469 (865)
T ss_pred CchHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHH----------hccchHHHHHHHHHHhccCCCCCCc--chhhH--
Confidence 456677778888777775532 11122223333332 2234555666777666555432 22 12223
Q ss_pred HHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccc
Q 001585 478 VQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPI 556 (1049)
Q Consensus 478 ~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~ 556 (1049)
++....--.+.++|+.|.-++.+|. ..++.....+...+..|+.|++.-||..|..++..+-+.. .....|+
T Consensus 470 --~iyNRviLEn~ivRaaAv~alaKfg---~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~--~~l~~~~ 541 (865)
T KOG1078|consen 470 --FIYNRVILENAIVRAAAVSALAKFG---AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKD--DVLNQNY 541 (865)
T ss_pred --HHhhhhhhhhhhhHHHHHHHHHHHh---cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhh--hhhcccc
Confidence 3333333467899999999999997 2344556778888899999999999999999999887442 3444454
No 166
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=62.40 E-value=36 Score=30.93 Aligned_cols=86 Identities=12% Similarity=0.067 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHhcCCC--CCCcccCchhhHHHHHHHhcccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 001585 737 YQQSLWSMVSSIMADKN--LEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYY 814 (1049)
Q Consensus 737 ~~~~i~~i~~~~l~~~~--~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~l~~l~~~~~~~~~~~~l~v~~~~~~~ 814 (1049)
++=.++..+...+.+.. ....++..+.+-++.++..+++++..++|+|...+-..|...+-......+..++.+. -
T Consensus 8 ~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~--L 85 (107)
T smart00802 8 HFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPELRSLALRCWHVLIKT--L 85 (107)
T ss_pred HHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHh--C
Confidence 33345556666665543 2234466788888888888787888888988887777776544333333344444444 2
Q ss_pred CHHHHHHHHH
Q 001585 815 NSSLTLSILH 824 (1049)
Q Consensus 815 ~p~~~l~~L~ 824 (1049)
+++.+-.+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T smart00802 86 KEEELGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 4555555554
No 167
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=62.01 E-value=3.7e+02 Score=32.80 Aligned_cols=75 Identities=21% Similarity=0.203 Sum_probs=59.3
Q ss_pred HHHHHHHhhccccCCCCcchhHHHHHHHHHhhccc-cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001585 473 LERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN-FSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 547 (1049)
Q Consensus 473 ~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~-f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~ 547 (1049)
+.+.+..|++-...++..-+|.|+|..+....+.. -.+...+..+...++..+.|..+.||.+|..||.++-...
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~ 157 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDP 157 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCC
Confidence 33444467877777888999999999999987621 1244567888888888899999999999999999998654
No 168
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=61.27 E-value=68 Score=29.16 Aligned_cols=85 Identities=15% Similarity=0.198 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcCCCCC--Cch--HHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchh-hHHHHHHHHHHHc
Q 001585 513 NFRKALHSVVSGLRDPE--LPV--RVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE-DLVFTLETIVDKF 587 (1049)
Q Consensus 513 ~~~~~~~~ll~~L~d~~--~~V--~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~-~l~~~l~~iv~~~ 587 (1049)
+.-.+++.+-+.|.|.+ .++ |..|..|+..++... ...+.++.|+|+.-|-..++..+.. .-..+-..++...
T Consensus 8 ~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~--g~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 8 HFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLM--GKHISSALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 34445555555666544 444 899999999999974 6888999999988888877654433 2445666667766
Q ss_pred cC-cccccHHHHH
Q 001585 588 GE-EMAPYALGLC 599 (1049)
Q Consensus 588 ~~-~i~p~~~~l~ 599 (1049)
.+ ++.|...+++
T Consensus 86 ~~~~l~~ll~~~~ 98 (107)
T smart00802 86 KEEELGPLLDQIF 98 (107)
T ss_pred CHHHHHHHHHHHH
Confidence 53 3444433333
No 169
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=61.21 E-value=1.5e+02 Score=29.89 Aligned_cols=63 Identities=21% Similarity=0.247 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccchhhHHHHHHHHHHHHhhcCCCCCHHHH
Q 001585 629 GCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMW 693 (1049)
Q Consensus 629 ~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~isp~l~ 693 (1049)
...+.+..+++. + .++-+-.+-+.+++.|...|+....+.+..++.++..++...+.+.+.+.
T Consensus 57 lA~~g~~dll~~-~-~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLv 119 (183)
T PF10274_consen 57 LARQGIKDLLER-G-GGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALV 119 (183)
T ss_pred HHHHHHHHHHHh-c-chhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 345555666666 2 23334456677788889999888889999999999999877666665543
No 170
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=60.87 E-value=27 Score=40.20 Aligned_cols=76 Identities=20% Similarity=0.108 Sum_probs=53.1
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhc
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 524 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~ 524 (1049)
++..+.+++.++|... ..+ . ..+.+.+++++|.+|+.|+.++|.+... ...+.+...
T Consensus 130 ~p~vR~aal~al~~r~-----~~~----~-----~~L~~~L~d~d~~Vra~A~raLG~l~~~---------~a~~~L~~a 186 (410)
T TIGR02270 130 EPPGRAIGLAALGAHR-----HDP----G-----PALEAALTHEDALVRAAALRALGELPRR---------LSESTLRLY 186 (410)
T ss_pred ChHHHHHHHHHHHhhc-----cCh----H-----HHHHHHhcCCCHHHHHHHHHHHHhhccc---------cchHHHHHH
Confidence 5677888887766511 111 1 2355567799999999999999987542 122234456
Q ss_pred CCCCCCchHHHHHHHHHHH
Q 001585 525 LRDPELPVRVDSVFALRSF 543 (1049)
Q Consensus 525 L~d~~~~V~~~Aa~AL~~~ 543 (1049)
+.|.+..||..|+.++..+
T Consensus 187 l~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 187 LRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HcCCCHHHHHHHHHHHHHc
Confidence 8899999999999999544
No 171
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=60.65 E-value=1.9e+02 Score=33.81 Aligned_cols=97 Identities=21% Similarity=0.232 Sum_probs=63.6
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhcccc-CCh-hHHHHHHHHHH
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINF-SDQ-NNFRKALHSVV 522 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f-~~~-~~~~~~~~~ll 522 (1049)
-++.|-++-.++|.+...+... .+..++...+++.|++++..=|--|+.++..|+...- .++ .....+-+.+.
T Consensus 100 v~r~Ri~aA~ALG~l~~~~~~~-----~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~ 174 (441)
T PF12054_consen 100 VIRARIAAAKALGLLLSYWPES-----SLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLL 174 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-----hHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHH
Confidence 4788999999999999987442 3445565578888999999999999999999986421 111 11245556666
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHh
Q 001585 523 SGLRDPELPVRVDSVFALRSFVEA 546 (1049)
Q Consensus 523 ~~L~d~~~~V~~~Aa~AL~~~~~~ 546 (1049)
.+|.++.++....-+..+.++...
T Consensus 175 ~~L~~~~~~~Y~El~~~l~~lr~e 198 (441)
T PF12054_consen 175 EILENPEPPYYDELVPSLKRLRTE 198 (441)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHH
Confidence 667654444444444444443333
No 172
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=60.43 E-value=1.5e+02 Score=32.76 Aligned_cols=200 Identities=14% Similarity=0.149 Sum_probs=82.2
Q ss_pred HHHHHHHHcccchhhHHHHHHHHHHHHhhcCCCCCHHHHH--------HHHHHHHHHhhhHhhhHh-hhHHhhhhHhhcC
Q 001585 655 LLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWS--------LWPLMMEALADWAIDFFP-NILVPLDNYISRG 725 (1049)
Q Consensus 655 ~~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~isp~l~~--------l~~~l~~~~~~~~~~~l~-~~~~~L~~~i~~~ 725 (1049)
++.++..+ ....+.+.+++.++..++...+...+.+.. .|..+++.++.. ..++. ....+|...+..+
T Consensus 60 ~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 60 FLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp --HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcC
Confidence 33444444 334456666666666666544433322221 334444433322 22333 3456666666666
Q ss_pred cccccccCCcchHHHHHHHHHHHhcCCCCCCcccCchhhHHHHHHHhcccCchhchHHHHHHHHHHHHh----hhhhHHH
Q 001585 726 TAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR----AEKSYLK 801 (1049)
Q Consensus 726 ~~~~l~~~~~~~~~~i~~i~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~l~~l~~----~~~~~~~ 801 (1049)
+...-.. ..+.+..+++.+...+.+...+. ...+..++..++..-.-+..=+=...+..+...+.. .....+.
T Consensus 137 ~~~~~~~-~~~~l~~ll~~L~~~l~~~~~~~--~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 137 PKRSEKL-VKEALPKLLQWLSSQLSSSDSEL--QYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp TT--HHH-HHHHHHHHHHHHH-TT-HHHH-----HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred Cccccch-HHHHHHHHHHHHHHhhcCCCcch--HHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 5532210 00234444444444332211111 134566666665432211000003444555554421 1111222
Q ss_pred H-HHHHHHHHHHhhCHHHHHHHHHhhCccHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHhccccC
Q 001585 802 C-LLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTAD 874 (1049)
Q Consensus 802 ~-~~l~v~~~~~~~~p~~~l~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~dkKl~~lal~~ll~~~~~ 874 (1049)
. .-+....-++-+++..+-.+... + ++....+-+. .-....=.++++..+-.++..++.
T Consensus 214 l~Y~~ll~lWlLSF~~~~~~~~~~~-~----~i~~L~~i~~---------~~~KEKvvRv~la~l~Nl~~~~~~ 273 (312)
T PF03224_consen 214 LQYQALLCLWLLSFEPEIAEELNKK-Y----LIPLLADILK---------DSIKEKVVRVSLAILRNLLSKAPK 273 (312)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHTT-S----HHHHHHHHHH---------H--SHHHHHHHHHHHHHTTSSSST
T ss_pred HHHHHHHHHHHHhcCHHHHHHHhcc-c----hHHHHHHHHH---------hcccchHHHHHHHHHHHHHhccHH
Confidence 2 22344445556788776665443 3 3444444444 333445556777777777766543
No 173
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=59.25 E-value=37 Score=40.81 Aligned_cols=109 Identities=19% Similarity=0.177 Sum_probs=68.9
Q ss_pred hhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCC
Q 001585 447 RQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR 526 (1049)
Q Consensus 447 ~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~ 526 (1049)
-.|.||..++|.+.- +.+. +.. ..|-+.-.+-+|++|+-|...+|-.+.-+ -....+..+=..+.
T Consensus 570 DVrRaAVialGFVl~---~dp~---~~~----s~V~lLses~N~HVRyGaA~ALGIaCAGt-----G~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 570 DVRRAAVIALGFVLF---RDPE---QLP----STVSLLSESYNPHVRYGAAMALGIACAGT-----GLKEAINLLEPLTS 634 (929)
T ss_pred HHHHHHHHHheeeEe---cChh---hch----HHHHHHhhhcChhhhhhHHHHHhhhhcCC-----CcHHHHHHHhhhhc
Confidence 457777777776432 2111 111 12222222447888988888888876432 12344444444555
Q ss_pred CCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhc
Q 001585 527 DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVE 572 (1049)
Q Consensus 527 d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~ 572 (1049)
|+.--||-.|+.|+..+.-.. .+.+-|....+-+.+.+.+.+-.
T Consensus 635 D~~~fVRQgAlIa~amIm~Q~--t~~~~pkv~~frk~l~kvI~dKh 678 (929)
T KOG2062|consen 635 DPVDFVRQGALIALAMIMIQQ--TEQLCPKVNGFRKQLEKVINDKH 678 (929)
T ss_pred ChHHHHHHHHHHHHHHHHHhc--ccccCchHHHHHHHHHHHhhhhh
Confidence 776778888998888887764 67788888888888888876644
No 174
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=56.96 E-value=3.7e+02 Score=31.21 Aligned_cols=343 Identities=15% Similarity=0.171 Sum_probs=165.8
Q ss_pred CChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCcCCCCChH--HHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 001585 35 PQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQV--DKDMVRDHILVFVAQVPPLLRVQLGECL 112 (1049)
Q Consensus 35 p~f~~~Ll~i~~~~~~~~~iRq~Aai~lKn~i~~~W~~~~~~~~~~i~~~--~k~~ir~~ll~~L~~~~~~ir~~l~~~i 112 (1049)
|.+...++.++.... ...+.|..-+.+=-.+...=.. ...+-+. .+...=...+..|...+..|....+.++
T Consensus 52 ~~y~~~~l~ll~~~~-~~d~vqyvL~Li~dll~~~~~~-----~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iL 125 (429)
T cd00256 52 GQYVKTFVNLLSQID-KDDTVRYVLTLIDDMLQEDDTR-----VKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSIL 125 (429)
T ss_pred HHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhchHH-----HHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHH
Confidence 678888888887654 5566665555554444331000 0000000 0011123344555667888999999999
Q ss_pred HHHHHhhCCCCchh----HHHHHHHHhhhh----hHHHHHHHHHHHHHhcccCCCCccccccccccccccccccchHHHH
Q 001585 113 KTIIHADYPEQWPH----LLDWVKHNLQDQ----QVYGALFVLRILSRKYEYQPTDSTSMKGYRIYEFKSDEERTPVYRI 184 (1049)
Q Consensus 113 ~~Ia~~d~P~~Wp~----Ll~~l~~~l~s~----~~~~~L~~L~~i~k~~~~~~t~~~~~~~~r~~~~~~~~~~~~l~~i 184 (1049)
+.++.+.--..=.. +++.+.+.+.++ .+..|+.||..+.+.-. ||. .|-.
T Consensus 126 t~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-----------~R~-~f~~---------- 183 (429)
T cd00256 126 AKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-----------YRF-AFVL---------- 183 (429)
T ss_pred HHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-----------HHH-HHHH----------
Confidence 99987642211122 334444444432 46677888888776441 121 1110
Q ss_pred HHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHhhhccC-CcccCChhhHHHHHHHHHHHhcCCCCCCCCCCChh
Q 001585 185 VEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEI-PKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPE 263 (1049)
Q Consensus 185 ~~~~~p~Ll~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~l-p~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~d~~ 263 (1049)
...++.|..++.... ...++++.++=|++-++...- -+.+.. ...++.+..++....
T Consensus 184 -~~~v~~L~~~L~~~~-------~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~----~~~i~~l~~i~k~s~---------- 241 (429)
T cd00256 184 -ADGVPTLVKLLSNAT-------LGFQLQYQSIFCIWLLTFNPHAAEVLKR----LSLIQDLSDILKEST---------- 241 (429)
T ss_pred -ccCHHHHHHHHhhcc-------ccHHHHHHHHHHHHHHhccHHHHHhhcc----ccHHHHHHHHHHhhh----------
Confidence 112344444443311 124667777777776654211 011110 123444455544311
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHH-HHHHHHHHhhCCcccCHHHHHHHHHHH
Q 001585 264 QRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILE-CHLNLLNRIRVGGYLPDRVTNLILQYL 342 (1049)
Q Consensus 264 ~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~l~fl 342 (1049)
-.|+-+-++.++..+...-.+. . .. ..+.+.++. .+..++......+|..+. +..-++++
T Consensus 242 ------KEKvvRv~l~~l~Nll~~~~~~---~-~~--------~~~~~~mv~~~l~~~l~~L~~rk~~Ded-L~edl~~L 302 (429)
T cd00256 242 ------KEKVIRIVLAIFRNLISKRVDR---E-VK--------KTAALQMVQCKVLKTLQSLEQRKYDDED-LTDDLKFL 302 (429)
T ss_pred ------hHHHHHHHHHHHHHHhhccccc---c-hh--------hhHHHHHHHcChHHHHHHHhcCCCCcHH-HHHHHHHH
Confidence 1355455555555555531100 0 00 113333443 334444444445575444 55677788
Q ss_pred HhhcCCch-hhhhchhhHHHHHHHHhhhccccCh--hhHhhhhcCHHHHHhHhc----------CcccccCCHHHHHHHH
Q 001585 343 SNSISKNS-MYNLLQPRLDVLLFEIVFPLMCFND--NDQKLWDEDPHEYVRKGY----------DIIEDLYSPRTASMDF 409 (1049)
Q Consensus 343 ~~~~~~~~-~~~~~~~~l~~li~~~i~p~l~l~~--~d~e~we~Dp~efi~~~~----------d~~~d~~s~R~aA~~l 409 (1049)
...++... ....|..+..++-. +.+.-|+ .+..-|.++..-|-.++. +...|..+.-.|+.+
T Consensus 303 ~e~L~~~~k~ltsfD~Y~~El~s----g~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~D- 377 (429)
T cd00256 303 TEELKNSVQDLSSFDEYKSELRS----GRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHD- 377 (429)
T ss_pred HHHHHHHHHHcCCHHHHHHHHhc----CCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhh-
Confidence 77665431 11234555555443 4444433 346678887766633321 112233344444433
Q ss_pred HHHHHHhcc--cchHHHH--HHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHH
Q 001585 410 VSELVRKRG--KENLQKF--IQFIVGIFKRYDETPVEYKPYRQKDGALLAIGAL 459 (1049)
Q Consensus 410 l~~L~~~~~--~~~~~~~--~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~l 459 (1049)
+..+++++| +.++..+ =..+.++++. +|...|.-||.+++.+
T Consensus 378 ige~vr~~P~gr~i~~~lg~K~~vM~Lm~h--------~d~~Vr~eAL~avQkl 423 (429)
T cd00256 378 IGEYVRHYPRGKDVVEQLGGKQRVMRLLNH--------EDPNVRYEALLAVQKL 423 (429)
T ss_pred HHHHHHHCccHHHHHHHcCcHHHHHHHhcC--------CCHHHHHHHHHHHHHH
Confidence 556777653 4343321 1234444443 1567777788887755
No 175
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=56.79 E-value=1.7e+02 Score=34.52 Aligned_cols=73 Identities=16% Similarity=0.153 Sum_probs=55.9
Q ss_pred HHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCC--hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001585 473 LERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSD--QNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 547 (1049)
Q Consensus 473 ~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~--~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~ 547 (1049)
+.+++ .|++-.+.++..-+|.|+|..+...+++. +. +.....++..+...+-|..+.||..|..||..+-+..
T Consensus 89 V~~~~-~h~lRg~eskdk~VR~r~lqila~~~d~v-~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~ 163 (885)
T COG5218 89 VAGTF-YHLLRGTESKDKKVRKRSLQILALLSDVV-REIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEME 163 (885)
T ss_pred HHHHH-HHHHhcccCcchhHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc
Confidence 33444 57887788889999999999999988743 22 3445566666677777899999999999999987654
No 176
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=56.06 E-value=3.2e+02 Score=30.19 Aligned_cols=33 Identities=9% Similarity=0.215 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 001585 102 PLLRVQLGECLKTIIHADYPEQWPHLLDWVKHN 134 (1049)
Q Consensus 102 ~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~ 134 (1049)
++-|+-.+.+-..+...|...+|.|++..+..+
T Consensus 3 ~k~kky~~~v~k~L~~Fe~~~EWAD~is~L~kL 35 (307)
T PF04118_consen 3 SKYKKYNAEVEKALKSFESSSEWADYISFLGKL 35 (307)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 455666666777777788888999876555444
No 177
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=56.02 E-value=75 Score=39.40 Aligned_cols=91 Identities=15% Similarity=0.250 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchh------hHHHHHHHHHHH
Q 001585 513 NFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE------DLVFTLETIVDK 586 (1049)
Q Consensus 513 ~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~------~l~~~l~~iv~~ 586 (1049)
....++|.++++|.=+++.||+++-.++..++.. .+..+.-|+..++..++.+-...++. ....+|..+.++
T Consensus 906 ~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~--~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~ 983 (1030)
T KOG1967|consen 906 QFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTE--SETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRR 983 (1030)
T ss_pred chhhHHHHHHHhcCCCccchhhhHhhhhhHHHHh--ccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhcc
Confidence 4688899999999999999999999999999987 46777889999999999887665542 244566666664
Q ss_pred c-cCcccccHHHHHHHHHHH
Q 001585 587 F-GEEMAPYALGLCQNLAAA 605 (1049)
Q Consensus 587 ~-~~~i~p~~~~l~~~L~~~ 605 (1049)
. ...+.||-+++++.|.+.
T Consensus 984 ~P~~~l~~fr~~Vl~al~k~ 1003 (1030)
T KOG1967|consen 984 LPTKSLLSFRPLVLRALIKI 1003 (1030)
T ss_pred CCCcccccccHHHHHHhhhc
Confidence 4 456788888888877754
No 178
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.48 E-value=59 Score=35.91 Aligned_cols=111 Identities=15% Similarity=0.181 Sum_probs=74.2
Q ss_pred HhcCCCCCCcccCchhhHHHHHHHhcccCchhchH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhCHHHHHHHHHhh
Q 001585 748 IMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVE-PYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKL 826 (1049)
Q Consensus 748 ~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~-~il~~~l~~l~~~~~~~~~~~~l~v~~~~~~~~p~~~l~~L~~~ 826 (1049)
.+++...+..++..++.-++.++++...+.+ ++. ..+..++. .-+.....++.....|++.|+-.||..-.++++.
T Consensus 89 ~~~~~s~~le~ke~ald~Le~lve~iDnAnd-l~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~- 165 (342)
T KOG2160|consen 89 ILNSSSVDLEDKEDALDNLEELVEDIDNAND-LISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIEL- 165 (342)
T ss_pred ccCcccCCHHHHHHHHHHHHHHHHhhhhHHh-HhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc-
Confidence 3444444555566788888888887665422 110 12222333 3345567888888999999999999988888885
Q ss_pred CccHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHhccccC
Q 001585 827 GVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTAD 874 (1049)
Q Consensus 827 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~dkKl~~lal~~ll~~~~~ 874 (1049)
| +++..+..+. +=...+.|+=+..|+++++..+++
T Consensus 166 ~----~L~~Ll~~ls---------~~~~~~~r~kaL~AissLIRn~~~ 200 (342)
T KOG2160|consen 166 G----ALSKLLKILS---------SDDPNTVRTKALFAISSLIRNNKP 200 (342)
T ss_pred c----cHHHHHHHHc---------cCCCchHHHHHHHHHHHHHhcCcH
Confidence 2 4555555665 555677778888999999988754
No 179
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=55.28 E-value=3.9 Score=35.23 Aligned_cols=6 Identities=33% Similarity=0.706 Sum_probs=0.4
Q ss_pred CCCCCC
Q 001585 980 SPIDEV 985 (1049)
Q Consensus 980 ~pl~~v 985 (1049)
-|+..+
T Consensus 41 ~p~p~f 46 (101)
T PF09026_consen 41 VPVPEF 46 (101)
T ss_dssp -----H
T ss_pred ccchhH
Confidence 466543
No 180
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=54.96 E-value=2.5e+02 Score=31.43 Aligned_cols=140 Identities=14% Similarity=0.206 Sum_probs=80.7
Q ss_pred CcChhhHHHHHHHHHHhhhhcCCCCCCCcCCCCChHHHHHHH---HHHHHHhhc--CChHHHHHHHHHHHHHHHhhCCCC
Q 001585 49 NCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVR---DHILVFVAQ--VPPLLRVQLGECLKTIIHADYPEQ 123 (1049)
Q Consensus 49 ~~~~~iRq~Aai~lKn~i~~~W~~~~~~~~~~i~~~~k~~ir---~~ll~~L~~--~~~~ir~~l~~~i~~Ia~~d~P~~ 123 (1049)
..+.+.|.-++..+.|.+++.-... .++. ..++- ..++..|.. ..+.+....+.++...++++--.+
T Consensus 87 ~L~fEsrKdv~~if~~llr~~~~~~-------~~p~-v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~~ 158 (335)
T PF08569_consen 87 KLDFESRKDVAQIFSNLLRRQIGSR-------SPPT-VDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESLAK 158 (335)
T ss_dssp GS-HHHHHHHHHHHHHHHT--BTTB---------HH-HHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHH
T ss_pred hCCCcccccHHHHHHHHHhhccCCC-------CCch-HHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHHH
Confidence 3578899999999999987765532 1111 23332 235555532 456677788888887776542100
Q ss_pred ---chhHHHHHHHHhhhh--hH-HHHHHHHHHHHHhcccCCCCccccccccccccccccccchHHHHHHHHHHHHHHHHH
Q 001585 124 ---WPHLLDWVKHNLQDQ--QV-YGALFVLRILSRKYEYQPTDSTSMKGYRIYEFKSDEERTPVYRIVEETFHHLLNIFN 197 (1049)
Q Consensus 124 ---Wp~Ll~~l~~~l~s~--~~-~~~L~~L~~i~k~~~~~~t~~~~~~~~r~~~~~~~~~~~~l~~i~~~~~p~Ll~~~~ 197 (1049)
+++.+..+.+.++.+ .+ -.|+.++++++.... ....+.+..-+..+...+.
T Consensus 159 ~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk-----------------------~~~a~fl~~n~d~ff~~~~ 215 (335)
T PF08569_consen 159 IILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHK-----------------------KLVAEFLSNNYDRFFQKYN 215 (335)
T ss_dssp HHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSH-----------------------HHHHHHHHHTHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccH-----------------------HHHHHHHHHHHHHHHHHHH
Confidence 133444455666655 33 466777777766541 1223444555566666777
Q ss_pred HHhhccCCchhHHHHHHHHHHHHHHhh
Q 001585 198 RLVQIVNPSLEVADLIKLICKIFWSSI 224 (1049)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~lk~~~~~~ 224 (1049)
.++.+++ ..+++..+|.+..+.
T Consensus 216 ~Ll~s~N-----YvtkrqslkLL~ell 237 (335)
T PF08569_consen 216 KLLESSN-----YVTKRQSLKLLGELL 237 (335)
T ss_dssp HHCT-SS-----HHHHHHHHHHHHHHH
T ss_pred HHccCCC-----eEeehhhHHHHHHHH
Confidence 7776553 567788888888775
No 181
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=51.16 E-value=1.1e+02 Score=36.42 Aligned_cols=82 Identities=17% Similarity=0.188 Sum_probs=67.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcc----CCCh---HHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCcC
Q 001585 6 LALILQGALSPNPEERKAAEHSLNQFQY----TPQH---LVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQ 78 (1049)
Q Consensus 6 l~~~L~~tls~d~~~r~~AE~~L~~~~~----~p~f---~~~Ll~i~~~~~~~~~iRq~Aai~lKn~i~~~W~~~~~~~~ 78 (1049)
|.-+|....||+..+|+..-+-|+++-+ .|.- ...|++.+.+++.+.-+|.++.+|++..+.|
T Consensus 25 L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~R---------- 94 (501)
T PF13001_consen 25 LPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDR---------- 94 (501)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhc----------
Confidence 5567777889999999999888887654 3443 5689999988877889999999999988854
Q ss_pred CCCChHHHHHHHHHHHHHhhc
Q 001585 79 QKISQVDKDMVRDHILVFVAQ 99 (1049)
Q Consensus 79 ~~i~~~~k~~ir~~ll~~L~~ 99 (1049)
++.++|..+--.+++++..
T Consensus 95 --l~~~e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 95 --LDDEERRELLPSLLKGISK 113 (501)
T ss_pred --CCHHHHHHHHHHHHHhhcc
Confidence 8889999988888888864
No 182
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=49.17 E-value=13 Score=26.42 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=22.5
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 001585 517 ALHSVVSGLRDPELPVRVDSVFALRSFV 544 (1049)
Q Consensus 517 ~~~~ll~~L~d~~~~V~~~Aa~AL~~~~ 544 (1049)
.++.++++|.+.+..++..|+.||.++.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5677777777777889999999998875
No 183
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=49.15 E-value=1.1e+02 Score=38.22 Aligned_cols=92 Identities=13% Similarity=0.179 Sum_probs=69.0
Q ss_pred HhhccccCCCCcchhHHHHHHHHHhhccc-cCChhHHHHHHHHHHhcCCCCC---CchHHHHHHHHHHHHHhcccccccc
Q 001585 479 QHVFPEFSSPVGHLRAKAAWVAGQYAHIN-FSDQNNFRKALHSVVSGLRDPE---LPVRVDSVFALRSFVEACRDLNEIR 554 (1049)
Q Consensus 479 ~~v~p~l~~~~~~lr~ra~~~l~~~~~~~-f~~~~~~~~~~~~ll~~L~d~~---~~V~~~Aa~AL~~~~~~~~~~~~l~ 554 (1049)
..++..+.-+.+.+|..+.-++.-+.... ---.+++..++|.++..=.|++ .+||..|..+|..+.+.. ....+.
T Consensus 912 PLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~-P~~~l~ 990 (1030)
T KOG1967|consen 912 PLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRL-PTKSLL 990 (1030)
T ss_pred HHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccC-CCcccc
Confidence 34444455678889998888887664311 0012688899999887766543 689999999999999854 478899
Q ss_pred cchHHHHHHHHHHhhhh
Q 001585 555 PILPQLLDEFFKLMNEV 571 (1049)
Q Consensus 555 p~l~~il~~L~~ll~~~ 571 (1049)
||-+.++++|.+.+.+.
T Consensus 991 ~fr~~Vl~al~k~LdDk 1007 (1030)
T KOG1967|consen 991 SFRPLVLRALIKILDDK 1007 (1030)
T ss_pred cccHHHHHHhhhccCcH
Confidence 99999999999988754
No 184
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=48.98 E-value=4.9e+02 Score=30.25 Aligned_cols=118 Identities=8% Similarity=0.080 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccC
Q 001585 407 MDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS 486 (1049)
Q Consensus 407 ~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~ 486 (1049)
.-++.-+....+.++++.++..+.++++.. |. + ...+.-.+ ..+.. .+.+|+ +.++
T Consensus 56 ~~~l~ll~~~~~~d~vqyvL~Li~dll~~~---~~-------~---~~~f~~~~--~~~~~----~~~~fl-----~lL~ 111 (429)
T cd00256 56 KTFVNLLSQIDKDDTVRYVLTLIDDMLQED---DT-------R---VKLFHDDA--LLKKK----TWEPFF-----NLLN 111 (429)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhc---hH-------H---HHHHHHHh--hcccc----chHHHH-----HHHc
Confidence 334444444455678888888888888752 11 1 11111111 11111 233443 2456
Q ss_pred CCCcchhHHHHHHHHHhhccccCCh--hHHHHHHHHHHhcCCCC-CCchHHHHHHHHHHHHHhcc
Q 001585 487 SPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGLRDP-ELPVRVDSVFALRSFVEACR 548 (1049)
Q Consensus 487 ~~~~~lr~ra~~~l~~~~~~~f~~~--~~~~~~~~~ll~~L~d~-~~~V~~~Aa~AL~~~~~~~~ 548 (1049)
.+..++.-.|+.+++.+..+...+. .....+++.+...+..+ +...+..|+.++..++....
T Consensus 112 ~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~ 176 (429)
T cd00256 112 RQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE 176 (429)
T ss_pred CCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch
Confidence 6788999999999999865422221 23344555666666543 34566778889999988765
No 185
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=47.18 E-value=3.6e+02 Score=33.42 Aligned_cols=133 Identities=16% Similarity=0.230 Sum_probs=74.8
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHHccCcccccHHH
Q 001585 518 LHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALG 597 (1049)
Q Consensus 518 ~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~ 597 (1049)
+.-++..|.+++.-|...+-..+...+... ++ +.++..|+...-+..+...+.+|-.+ + .|+...
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~--~~------~~l~~~l~~y~~~t~s~~~~~il~~~----~---~P~~K~ 70 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNSD--RE------PWLVNGLVDYYLSTNSQRALEILVGV----Q---EPHDKH 70 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhcc--ch------HHHHHHHHHHHhhcCcHHHHHHHHhc----C---CccHHH
Confidence 345666777778878888888888777653 21 14566666655555544444444322 1 366667
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccchh-hHHHHHHH
Q 001585 598 LCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQ-EVFEEVLE 676 (1049)
Q Consensus 598 l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~-~~~~~~l~ 676 (1049)
++..|-..|.+ +-.+..++..++.+|+. ..|.++.-++..+++-+-.||..|.. -.+..++-
T Consensus 71 ~~~~l~~~~~~---------------~~~Rl~~L~Ll~~~v~~--qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~ 133 (668)
T PF04388_consen 71 LFDKLNDYFVK---------------PSYRLQALTLLGHFVRS--QPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALL 133 (668)
T ss_pred HHHHHHHHHcC---------------chhHHHHHHHHHHHHhc--CCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHH
Confidence 77666543321 11233556666666655 23444444555677777777765543 33455555
Q ss_pred HHHHHh
Q 001585 677 IVSYMT 682 (1049)
Q Consensus 677 ll~~l~ 682 (1049)
++..++
T Consensus 134 ~LimlL 139 (668)
T PF04388_consen 134 VLIMLL 139 (668)
T ss_pred HHHHHh
Confidence 555555
No 186
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=46.20 E-value=3.3e+02 Score=27.48 Aligned_cols=143 Identities=16% Similarity=0.228 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHhccc-----CCCCc------CCCCchhhhHHHHHHHHHHHhhh------
Q 001585 402 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRY-----DETPV------EYKPYRQKDGALLAIGALCDKLK------ 464 (1049)
Q Consensus 402 ~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~-----~~~~~------~~~~w~~keaal~~lg~la~~l~------ 464 (1049)
+|.+|..+|.++++..++..+ .+|-..++-+. ...+. ...+.|.|-+|+.++..+-++..
T Consensus 2 vR~~Al~~L~al~k~~~~r~l---~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~A 78 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSL---FGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQA 78 (182)
T ss_pred hhHHHHHHHHHHHHhcCCcee---HhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHH
Confidence 699999999999999544333 23333333222 11111 12378999999999998887742
Q ss_pred -cCC----Cc---hhhHHHH---HHHhhccccCC-CCcchhHHHHHHHHHhhccc-cC--ChhHHHHHHHHHHhcCCCCC
Q 001585 465 -QTE----PY---KSELERM---LVQHVFPEFSS-PVGHLRAKAAWVAGQYAHIN-FS--DQNNFRKALHSVVSGLRDPE 529 (1049)
Q Consensus 465 -~~~----~~---~~~~~~~---l~~~v~p~l~~-~~~~lr~ra~~~l~~~~~~~-f~--~~~~~~~~~~~ll~~L~d~~ 529 (1049)
+.+ .| -..+-.+ +...++-.+.. .++-+-...+.+++-..... |. +.+.+..++..+...+.+.|
T Consensus 79 e~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 79 EESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred HhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCC
Confidence 111 11 1112222 22223333442 34555567888888775432 11 23678888888888888888
Q ss_pred CchHHHHHHHHHHHHHhc
Q 001585 530 LPVRVDSVFALRSFVEAC 547 (1049)
Q Consensus 530 ~~V~~~Aa~AL~~~~~~~ 547 (1049)
..|++.|..++..++...
T Consensus 159 ~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CcHHHHHHHHHHHHHcCC
Confidence 899999999999888654
No 187
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=45.94 E-value=1.3e+03 Score=34.29 Aligned_cols=333 Identities=13% Similarity=0.147 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhccccCCh--hHHHHHHHHHHhcCCCCCCc-hHHHHHHHHHH----HHHhcccccccccchHHHHHHHH
Q 001585 493 RAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGLRDPELP-VRVDSVFALRS----FVEACRDLNEIRPILPQLLDEFF 565 (1049)
Q Consensus 493 r~ra~~~l~~~~~~~f~~~--~~~~~~~~~ll~~L~d~~~~-V~~~Aa~AL~~----~~~~~~~~~~l~p~l~~il~~L~ 565 (1049)
|..-..=++.+-+..|.++ ..+..++|.+++.+.+..+. .+..+..=|+. ++..+...+.++||...++..++
T Consensus 24 klk~~~E~~~~le~~~~~~~~~~l~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r~~~~e~~~~~~~~~~~~~~ 103 (3550)
T KOG0889|consen 24 KLKMLVEIRDFLENLFSPESYLFLEMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNRLPHNEVFKPFSQELLKVLM 103 (3550)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhchhhHHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHhc-----------ccCCCCCCChhHHHHHHHHHHH
Q 001585 566 KLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNT-----------AEADEDADDPGALAAVGCLRAI 634 (1049)
Q Consensus 566 ~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~-----------~~~d~~~~~~~~~~~~~~le~i 634 (1049)
.++..-..|...-+|+.++..++ ...|.+.+.++.......++..+ +...+.+.-+.+. ......+-
T Consensus 104 ~vl~~dNeen~~l~lkii~~l~r-~f~~~~~~~v~~fl~~V~~ly~~~~~~v~~~f~~p~~~~~~~~~~~~-~~~~~~~~ 181 (3550)
T KOG0889|consen 104 RVLTNDNEENAILCLKIITDLFR-QFKSLVEQHVQPFLDIVIDLYKNMPNLVNEGFIEPKSTEEEPLNHPE-SADSSLTE 181 (3550)
T ss_pred HHHhcccchhhhhHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCcCcCCCCCchh-hhhhhcCc
Q ss_pred HHHHHhhcCChHHH----------HHHHhhHHHHHHHHcccchhhHHHHHHHHHHHHh---hcCCCCCHHHHHHHHHHHH
Q 001585 635 STILESVSRLPHLF----------VQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMT---FFSPTISLEMWSLWPLMME 701 (1049)
Q Consensus 635 ~~ll~~~~~~~~~~----------~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~l~---~~~~~isp~l~~l~~~l~~ 701 (1049)
...+.--+..|..+ +-+.-.++...+..+.+...+|++-+++.+..-. -+...++..+.++++....
T Consensus 182 ~~~~~~e~~~p~~~~~s~kvl~e~p~iv~~~~q~yk~~i~~~i~~~~pL~~~~l~v~~~d~~~~~~~~~~~~~ll~~CP~ 261 (3550)
T KOG0889|consen 182 YHKIGVEQLLPSTYPQSFKVLAECPIIVVLLYQLYKQLIQTGIPELLPLILNFLSVRVPDSPYWMFLSDGTLQLLYDCPS 261 (3550)
T ss_pred ccccCccccCcccccceeeeheeccHHHHHHHHHHHHHhhhhhHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHhChH
Q ss_pred HHhhhHhhhHhhhHHhhhhHhhcCcccccccCCcchHHHHHHHHHHHhcCCCCCCcccCc-------hhhHHHHHHHhcc
Q 001585 702 ALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEP-------APKLIEVVFQNCK 774 (1049)
Q Consensus 702 ~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~~l~~~~~~~~~~~~-------a~~ll~~ii~~~~ 774 (1049)
-+.....+.+-..-.++.. ++....+.++.+++..+-.-..+... |..++..++++.+
T Consensus 262 el~~~RkElL~a~rhilst---------------~~k~~f~P~id~L~de~iLiG~G~t~~e~lRplays~LAdllHhvR 326 (3550)
T KOG0889|consen 262 ELLSLRKELLVATRHILST---------------DLKRGFLPMIDKLLDERILIGTGFTAQESLRPLAYSMLADLLHHVR 326 (3550)
T ss_pred HHHHHHHHHHHHHHHHHhH---------------hHHhhhhhhhHHHhccceeecCCcchhhhccHHHHHHHHHHHHHHH
Q ss_pred cCch-hchHHHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHHhhCHHHHHHHHHhhCccHHHHHHHHHHHHHHHh
Q 001585 775 GQVD-HWVEPYLRITVERLRR--------AEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKK 845 (1049)
Q Consensus 775 ~~~~-~~l~~il~~~l~~l~~--------~~~~~~~~~~l~v~~~~~~~~p~~~l~~L~~~~~~~~~~~~w~~~~~~~~~ 845 (1049)
+++. .-+..++......|.+ .+...+..+++.-+....-..++....+| -.+++....++.
T Consensus 327 ~~L~~~~i~~~i~l~s~~l~D~~l~~~iq~m~akLllNlve~i~~~~~~s~~~~~~lL------~~il~~~v~kf~---- 396 (3550)
T KOG0889|consen 327 ESLSLTQIIKVISLFSRNLHDSSLSSGIQTMSAKLLLNLVERIEELGCQSVDRARDLL------LRILESFVSKFK---- 396 (3550)
T ss_pred hcCCHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHH------HHHHHHHHHHHH----
Q ss_pred hccccCcccchh
Q 001585 846 NGLRVNFKREHD 857 (1049)
Q Consensus 846 ~~~~~~~~~~~d 857 (1049)
.|.+.++
T Consensus 397 -----t~~~~~~ 403 (3550)
T KOG0889|consen 397 -----TFARYRD 403 (3550)
T ss_pred -----HHHHhhh
No 188
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=45.62 E-value=40 Score=25.33 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhh
Q 001585 84 VDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHAD 119 (1049)
Q Consensus 84 ~~k~~ir~~ll~~L~~~~~~ir~~l~~~i~~Ia~~d 119 (1049)
.+.+++|+-+++.|...++.-|.++..+|+.|.+.+
T Consensus 3 ~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~fs 38 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESREPSEREQLLPVIATLLKFS 38 (46)
T ss_dssp HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT--
T ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCCC
Confidence 467899999999998877888999999999987643
No 189
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.05 E-value=1.7e+02 Score=29.94 Aligned_cols=88 Identities=23% Similarity=0.311 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHH---HH---Hc
Q 001585 514 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETI---VD---KF 587 (1049)
Q Consensus 514 ~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~i---v~---~~ 587 (1049)
...+++.....|.+.+-+-+..|-.-+..++... .+.+.|.+|+++-.|=..+...+.+.+..+|+.+ +. ..
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~--g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~v 189 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAG--GEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCV 189 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhc--ccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccc
Confidence 3566777788888778888999999888888774 6889999999999999888887777655555444 32 35
Q ss_pred cCcccccHHHHHHHHH
Q 001585 588 GEEMAPYALGLCQNLA 603 (1049)
Q Consensus 588 ~~~i~p~~~~l~~~L~ 603 (1049)
+..+.||.-+|...+-
T Consensus 190 G~aLVPfYRQlLp~~n 205 (262)
T KOG3961|consen 190 GAALVPFYRQLLPVLN 205 (262)
T ss_pred chhhhhHHHHhhhhhh
Confidence 6788888888776543
No 190
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.57 E-value=8.3e+02 Score=31.11 Aligned_cols=103 Identities=15% Similarity=0.105 Sum_probs=57.2
Q ss_pred HHHHHHHhhcc---ccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc---cccccccchHHHHHHHHHHhh
Q 001585 496 AAWVAGQYAHI---NFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR---DLNEIRPILPQLLDEFFKLMN 569 (1049)
Q Consensus 496 a~~~l~~~~~~---~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~---~~~~l~p~l~~il~~L~~ll~ 569 (1049)
+..-+|.++.. +|. ..+..++--++..+.+++..|+..|..|+.++++.++ ....++....=++.++-..++
T Consensus 568 ~ld~I~~~a~~~g~~F~--~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~ 645 (1014)
T KOG4524|consen 568 VLDSIGTIAAVMGEEFQ--PELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLN 645 (1014)
T ss_pred hhhhhHHHHHHhHHHHH--HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhc
Confidence 34445666543 232 2334444444556667778899999999999998875 233455555556666655555
Q ss_pred hhc-hhhHHHHHHHHHHHccCcccccHHHHHH
Q 001585 570 EVE-NEDLVFTLETIVDKFGEEMAPYALGLCQ 600 (1049)
Q Consensus 570 ~~~-~~~l~~~l~~iv~~~~~~i~p~~~~l~~ 600 (1049)
..+ +..+..++.-+...-+-+..|+..++++
T Consensus 646 ~~~~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq 677 (1014)
T KOG4524|consen 646 TSGMSPRVPDVLMVVLQYSDYGTIPNLKDVVQ 677 (1014)
T ss_pred cCCCCchhHHHHHHHhhcCCCCchhhHHHHHH
Confidence 322 2234445544444444444455444443
No 191
>PF13817 DDE_Tnp_IS66_C: IS66 C-terminal element
Probab=41.66 E-value=28 Score=25.15 Aligned_cols=28 Identities=14% Similarity=0.493 Sum_probs=21.8
Q ss_pred CCCCchHHHHHHHHHHHHhhChHHHHHH
Q 001585 982 IDEVDPFVFFVDTIKVMQASDPLRFQNL 1009 (1049)
Q Consensus 982 l~~vd~~~~~~~~l~~~~~~~~~~~~~l 1009 (1049)
+..||++.|+..+|..+.+.....+..+
T Consensus 8 ~ngv~P~~yL~~vL~~i~~~~~~~~~~L 35 (39)
T PF13817_consen 8 LNGVNPYAYLTDVLERIPNHPANDIDEL 35 (39)
T ss_pred HcCCCHHHHHHHHHHHHccCCHHHHHHh
Confidence 5679999999999999988544555544
No 192
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=41.37 E-value=4.7e+02 Score=27.95 Aligned_cols=121 Identities=14% Similarity=0.148 Sum_probs=68.5
Q ss_pred hhhhHHHHHHHHHHHhhhcC--CCchhhHHHHHHHhhccccCCC-Cc---chhHHH---HHHHHHhhccccCChhHHHHH
Q 001585 447 RQKDGALLAIGALCDKLKQT--EPYKSELERMLVQHVFPEFSSP-VG---HLRAKA---AWVAGQYAHINFSDQNNFRKA 517 (1049)
Q Consensus 447 ~~keaal~~lg~la~~l~~~--~~~~~~~~~~l~~~v~p~l~~~-~~---~lr~ra---~~~l~~~~~~~f~~~~~~~~~ 517 (1049)
-.-++++-.+..++..+... ..+..-...|+.. ++..+.+. .. +.|+.| .-+.+-+..-.-.....+...
T Consensus 112 GAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~-~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~ 190 (255)
T PF10350_consen 112 GAFESVYPGFTALCRRLWSSNNPELSELPEEWLDE-LLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRT 190 (255)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHH-HHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHH
Confidence 34677777777777777532 2222223345433 33344433 22 455544 222222222111111456666
Q ss_pred HHHHHhcCCCCC--------CchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHh
Q 001585 518 LHSVVSGLRDPE--------LPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLM 568 (1049)
Q Consensus 518 ~~~ll~~L~d~~--------~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll 568 (1049)
+..+++.-..+. ..-|++|...|+.++.+....+.+.||+++.+.--+..+
T Consensus 191 ~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f 249 (255)
T PF10350_consen 191 MKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGF 249 (255)
T ss_pred HHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhC
Confidence 777766655332 247899999999999988777888899888876555443
No 193
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=41.34 E-value=5.1e+02 Score=28.36 Aligned_cols=213 Identities=11% Similarity=0.142 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccchhhHHHHHHHHHHHHhhcCC--CCCHHHH----HHHHHHHHH
Q 001585 629 GCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP--TISLEMW----SLWPLMMEA 702 (1049)
Q Consensus 629 ~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~--~isp~l~----~l~~~l~~~ 702 (1049)
-|..|+..++++... ..+.+.++|.++.-|-.+....---++.-+..++..+. .+++-+. .+++.++.|
T Consensus 62 lcVscLERLfkakeg-----ahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildc 136 (524)
T KOG4413|consen 62 LCVSCLERLFKAKEG-----AHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDC 136 (524)
T ss_pred hHHHHHHHHHhhccc-----hhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHH
Confidence 477888888888642 23566778888887765544333333444445555553 4554432 678888888
Q ss_pred HhhhHhhhHhhhHHhhhhHhhcCcccccccCCcchHHHHHHH------HHHHhcCCCCCCcccCchhhHHHHHHHhcccC
Q 001585 703 LADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSM------VSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ 776 (1049)
Q Consensus 703 ~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i------~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~ 776 (1049)
+.+.+.+.-......+...... + ..++.+|.- -.+-+..+ ..+-.+..+..|+..++--.+.
T Consensus 137 IggeddeVAkAAiesikrialf-p---------aaleaiFeSellDdlhlrnlaak-cndiaRvRVleLIieifSiSpe- 204 (524)
T KOG4413|consen 137 IGGEDDEVAKAAIESIKRIALF-P---------AALEAIFESELLDDLHLRNLAAK-CNDIARVRVLELIIEIFSISPE- 204 (524)
T ss_pred HcCCcHHHHHHHHHHHHHHHhc-H---------HHHHHhcccccCChHHHhHHHhh-hhhHHHHHHHHHHHHHHhcCHH-
Confidence 7654444444444444432111 1 111111110 00000001 0111122333333333322221
Q ss_pred chhchH--HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhCHHHHHHHHHhhCccHHHHHHHHHHHHHHHhhccccCccc
Q 001585 777 VDHWVE--PYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKR 854 (1049)
Q Consensus 777 ~~~~l~--~il~~~l~~l~~~~~~~~~~~~l~v~~~~~~~~p~~~l~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 854 (1049)
...++. .++..+..-|...+..-++..++..+-.+++.. .--+++.+ +.+++..|.-+.+ .=++
T Consensus 205 saneckkSGLldlLeaElkGteDtLVianciElvteLaete--HgreflaQ----eglIdlicnIIsG--------adsd 270 (524)
T KOG4413|consen 205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETE--HGREFLAQ----EGLIDLICNIISG--------ADSD 270 (524)
T ss_pred HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHh--hhhhhcch----hhHHHHHHHHhhC--------CCCC
Confidence 122221 344444444444445555666666666554321 11233322 4455555555442 4567
Q ss_pred chhhHHHHHHHHHHhccc
Q 001585 855 EHDKKVCCLGLTSLLALT 872 (1049)
Q Consensus 855 ~~dkKl~~lal~~ll~~~ 872 (1049)
+++|-...+|+.+++...
T Consensus 271 Pfekfralmgfgkffgke 288 (524)
T KOG4413|consen 271 PFEKFRALMGFGKFFGKE 288 (524)
T ss_pred cHHHHHHHHHHHHHhcch
Confidence 888888999999998754
No 194
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=39.90 E-value=2e+02 Score=29.32 Aligned_cols=35 Identities=9% Similarity=0.059 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 001585 512 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 546 (1049)
Q Consensus 512 ~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~ 546 (1049)
+...+++..+++.-...--.||..|+.++..++..
T Consensus 3 ~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~ 37 (193)
T PF12612_consen 3 ELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHS 37 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455555555554444446999999999999943
No 195
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=39.12 E-value=28 Score=32.20 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=42.0
Q ss_pred CCcchhHHHHHHHHHhhccccCChhHH--HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 001585 488 PVGHLRAKAAWVAGQYAHINFSDQNNF--RKALHSVVSGLRDPELPVRVDSVFALRSFVEA 546 (1049)
Q Consensus 488 ~~~~lr~ra~~~l~~~~~~~f~~~~~~--~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~ 546 (1049)
..|...+-||.=||+|+.....--..+ ..+=..++.+|.+++.-||..|..|++.++-+
T Consensus 56 ~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 56 DDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred CCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 467777889999999987531111111 22446788999999999999999999998754
No 196
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=38.98 E-value=47 Score=40.99 Aligned_cols=76 Identities=18% Similarity=0.296 Sum_probs=60.1
Q ss_pred cchhHHHHHHHHHhhccccCCh---h-HHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHH
Q 001585 490 GHLRAKAAWVAGQYAHINFSDQ---N-NFRKALHSVVSGLR-DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEF 564 (1049)
Q Consensus 490 ~~lr~ra~~~l~~~~~~~f~~~---~-~~~~~~~~ll~~L~-d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L 564 (1049)
|--|-.++-++|.|.... ++ . .-..+++.+++||. |.+.+|-..|..+|..++.. .+..+.||++.++..+
T Consensus 82 ~~~Rl~~L~Ll~~~v~~q--p~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~--ip~~l~~~L~~Lf~If 157 (668)
T PF04388_consen 82 PSYRLQALTLLGHFVRSQ--PPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH--IPSSLGPHLPDLFNIF 157 (668)
T ss_pred chhHHHHHHHHHHHHhcC--CchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc--ccchhhHHHHHHHHHH
Confidence 446777888888886522 11 1 12367888999986 88999999999999999988 4788999999999999
Q ss_pred HHHhh
Q 001585 565 FKLMN 569 (1049)
Q Consensus 565 ~~ll~ 569 (1049)
..++.
T Consensus 158 ~Rl~~ 162 (668)
T PF04388_consen 158 GRLLS 162 (668)
T ss_pred HHHHH
Confidence 99884
No 197
>PF10487 Nup188: Nucleoporin subcomplex protein binding to Pom34; InterPro: IPR018864 This is one of the many peptides that make up the nucleoporin complex (NPC), and is found across eukaryotes []. The Nup188 subcomplex (Nic96p-Nup188p-Nup192p-Pom152p) is one of at least six that make up the NPC, and as such is symmetrically localised on both faces of the NPC at the nuclear end, being integrally bound to the C terminus of Pom34p [].
Probab=38.93 E-value=6.4e+02 Score=32.73 Aligned_cols=117 Identities=12% Similarity=0.123 Sum_probs=77.9
Q ss_pred chHHHHHHHHHHHhcCCCCCCcccCchhhHHHHHHHhcccCchhchHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHH
Q 001585 736 DYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR---AEKSYLKCLLVQVIADAL 812 (1049)
Q Consensus 736 ~~~~~i~~i~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~l~~l~~---~~~~~~~~~~l~v~~~~~ 812 (1049)
+.+..+++.+.+++.+....+ .+..+++.+-..+... +|++.++..+.. ...-.+...++.++..++
T Consensus 545 ~~v~~ii~Ll~~l~~~~~~~~----~~~~iL~~~S~~l~~~------DIisvI~~ile~~L~~~~v~ll~scl~fL~aL~ 614 (931)
T PF10487_consen 545 ERVAEIIDLLASLLSSDNSIE----DSKEILEEASAYLDHS------DIISVIFDILERSLQSRNVELLTSCLRFLTALL 614 (931)
T ss_pred HHHHHHHHHHHHHHccCcchh----HHHHHHHHHhhccccC------cHHHHHHHHHHHHcccCChHHHHHHHHHHHHHh
Confidence 456667777888875432111 2445555444443322 566666665544 224456677788888888
Q ss_pred hhCHHHHHHHHHhhCcc-----HHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHhcc
Q 001585 813 YYNSSLTLSILHKLGVA-----TEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLAL 871 (1049)
Q Consensus 813 ~~~p~~~l~~L~~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~dkKl~~lal~~ll~~ 871 (1049)
-..|..+..+|...+++ .++....+..++ ...|.|+-=++++-|.+.|..
T Consensus 615 p~~p~rVW~~L~rS~LL~~~g~~G~~s~ilgs~E---------~~~G~Y~ftls~lkL~~~Lv~ 669 (931)
T PF10487_consen 615 PIFPGRVWSYLSRSSLLGSDGKGGLASVILGSIE---------MVSGRYDFTLSLLKLFSALVD 669 (931)
T ss_pred ccChHHHHHHHhhCcCcccCCccchHHHhhhhhh---------ccCCcchHHHHHHHHHHHHHH
Confidence 88999999999876443 456677776778 888999999999998887754
No 198
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.88 E-value=3.8e+02 Score=35.84 Aligned_cols=151 Identities=15% Similarity=0.199 Sum_probs=96.9
Q ss_pred CCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCcCCCCChHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 001585 34 TPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLK 113 (1049)
Q Consensus 34 ~p~f~~~Ll~i~~~~~~~~~iRq~Aai~lKn~i~~~W~~~~~~~~~~i~~~~k~~ir~~ll~~L~~~~~~ir~~l~~~i~ 113 (1049)
+|.|+..|.... ..+..-.+|.++.-+|+-.|-.+=- ...+..|.-|+..+...+.+....+|...+.+++
T Consensus 1524 ~~e~l~~l~~~~-~~~~tw~vr~avl~fl~~~vy~n~F--------v~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Ls 1594 (1710)
T KOG1851|consen 1524 QPEFLRDLKMLT-ADSSTWRVRSAVLKFLQTVVYSNIF--------VSQELRRDDIRKLLESLLNDDQIEVREEAAKCLS 1594 (1710)
T ss_pred HHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHhh--------cccchhHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 445555555532 3334678888877777776655433 2457789999999999999888889999999999
Q ss_pred HHHHhhCCCCchhHHHHHHHHhhhh-----hHHHHHHHHHHHHHhcccCCCCccccccccccccccccccchHHHHHHHH
Q 001585 114 TIIHADYPEQWPHLLDWVKHNLQDQ-----QVYGALFVLRILSRKYEYQPTDSTSMKGYRIYEFKSDEERTPVYRIVEET 188 (1049)
Q Consensus 114 ~Ia~~d~P~~Wp~Ll~~l~~~l~s~-----~~~~~L~~L~~i~k~~~~~~t~~~~~~~~r~~~~~~~~~~~~l~~i~~~~ 188 (1049)
.+.+.-|-.-=++-........++. ..|||...|..++=.+.| .++..
T Consensus 1595 gl~~~s~~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy---------------------------~vP~w 1647 (1710)
T KOG1851|consen 1595 GLLQGSKFQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPY---------------------------VVPLW 1647 (1710)
T ss_pred HHHhccccccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccc---------------------------cchhh
Confidence 9998765432232222222223322 569999999999977632 34457
Q ss_pred HHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHh
Q 001585 189 FHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSS 223 (1049)
Q Consensus 189 ~p~Ll~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~ 223 (1049)
+|..+........+ +.......+.++.-|+..
T Consensus 1648 ip~~L~~Ls~fa~e---~~~i~~tvkktvseFrrt 1679 (1710)
T KOG1851|consen 1648 IPKPLMNLSSFARE---SAAIKQTVKKTVSEFRRT 1679 (1710)
T ss_pred hHHHHHHHHhhcCC---chHHHHHHHHHHHHHHHH
Confidence 78777766655432 222334444555556554
No 199
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=38.14 E-value=2.8e+02 Score=33.77 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccchhhHHHHHHHHHHHHhhcCCCCCHHH-HHHHHHHHHHH-hhh
Q 001585 629 GCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEM-WSLWPLMMEAL-ADW 706 (1049)
Q Consensus 629 ~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~isp~l-~~l~~~l~~~~-~~~ 706 (1049)
.+++-+..|.+.+.. ..+.+.++|+|..+++....-.-+.+++++..+.+... + +.+ -.++|.+.++. +..
T Consensus 369 ~i~e~mdlL~~Kt~~-----e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD-~-~~vk~~ilP~l~~l~~~tt 441 (700)
T KOG2137|consen 369 FILENMDLLKEKTPP-----EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID-V-PFVKQAILPRLKNLAFKTT 441 (700)
T ss_pred hHHhhHHHHHhhCCh-----HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc-H-HHHHHHHHHHhhcchhccc
Confidence 567777777776632 35778999999999988777788889999888876543 1 122 24567666553 222
Q ss_pred HhhhHhhhHHhhhhHh
Q 001585 707 AIDFFPNILVPLDNYI 722 (1049)
Q Consensus 707 ~~~~l~~~~~~L~~~i 722 (1049)
....-.+++.++..++
T Consensus 442 ~~~vkvn~L~c~~~l~ 457 (700)
T KOG2137|consen 442 NLYVKVNVLPCLAGLI 457 (700)
T ss_pred chHHHHHHHHHHHHHH
Confidence 2233345556665554
No 200
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=38.11 E-value=1.3e+03 Score=32.22 Aligned_cols=97 Identities=13% Similarity=0.269 Sum_probs=63.7
Q ss_pred ChhhHHHHHHHHHHhhhhcCCCCCCCcCCCCC--hHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhhCC---CCc
Q 001585 51 DLSVRQVASIHFKNFIAKNWAPHEPNEQQKIS--QVDKDMVRDHILVFVA-QVPPLLRVQLGECLKTIIHADYP---EQW 124 (1049)
Q Consensus 51 ~~~iRq~Aai~lKn~i~~~W~~~~~~~~~~i~--~~~k~~ir~~ll~~L~-~~~~~ir~~l~~~i~~Ia~~d~P---~~W 124 (1049)
+..+|..|.-.||..-.+.-...+ ++ .-.|..+|. +...|. ..+..||..+..|+..|...-.. ..|
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eE------L~~f~FQkefLkP-fe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGW 1222 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREE------LANYNFQNEFMKP-FVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGW 1222 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhh------hhchhHHHHHHHH-HHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 456777777777776666554311 11 113444433 333343 45668999999999988765333 579
Q ss_pred hhHHHHHHHHhhhh---hHHHHHHHHHHHHHhc
Q 001585 125 PHLLDWVKHNLQDQ---QVYGALFVLRILSRKY 154 (1049)
Q Consensus 125 p~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~ 154 (1049)
+.++.-+-...... -+..|..++..|++++
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~ 1255 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREY 1255 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhh
Confidence 99999888776655 3578888888888876
No 201
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=37.08 E-value=1.7e+02 Score=32.78 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=52.5
Q ss_pred hHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChh------HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHH
Q 001585 472 ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQN------NFRKALHSVVSGLRDPELPVRVDSVFALRSFVE 545 (1049)
Q Consensus 472 ~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~------~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~ 545 (1049)
+++.|+. +.-..+.+++-+.|+.++.++|.+-.-. .+.+ .-..-+..++.+|.|.+..+|..|-..++-|+.
T Consensus 206 n~d~ff~-~~~~Ll~s~NYvtkrqslkLL~ellldr-~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 206 NYDRFFQ-KYNKLLESSNYVTKRQSLKLLGELLLDR-SNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp THHHHHH-HHHHHCT-SSHHHHHHHHHHHHHHHHSG-GGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHccCCCeEeehhhHHHHHHHHHch-hHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHh
Confidence 4556665 4555778889999999999999974210 0101 124457888999999999999999999999999
Q ss_pred hcc
Q 001585 546 ACR 548 (1049)
Q Consensus 546 ~~~ 548 (1049)
++.
T Consensus 284 Np~ 286 (335)
T PF08569_consen 284 NPN 286 (335)
T ss_dssp -SS
T ss_pred CCC
Confidence 875
No 202
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=36.71 E-value=3.9e+02 Score=33.81 Aligned_cols=134 Identities=10% Similarity=0.174 Sum_probs=86.7
Q ss_pred cCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHH
Q 001585 399 LYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLV 478 (1049)
Q Consensus 399 ~~s~R~aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~ 478 (1049)
...+-.-|...|..++...+....+........+|.... ...-..+|+++-++-.++... + +.. +.
T Consensus 308 N~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lk-----ekk~~l~d~l~~~~d~~~ns~----~----l~~-~~ 373 (815)
T KOG1820|consen 308 NINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLK-----EKKSELRDALLKALDAILNST----P----LSK-MS 373 (815)
T ss_pred chhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhh-----hccHHHHHHHHHHHHHHHhcc----c----HHH-HH
Confidence 345666777888888887765433222222222222211 114567888888877766521 1 112 22
Q ss_pred HhhccccCCCCcchhHHHHHHHHHhhc-cccC--ChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 001585 479 QHVFPEFSSPVGHLRAKAAWVAGQYAH-INFS--DQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 546 (1049)
Q Consensus 479 ~~v~p~l~~~~~~lr~ra~~~l~~~~~-~~f~--~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~ 546 (1049)
..|+-.+.+.+|-+|..+.-++++... .... .......+.+.++.+.+|.+..||..|..|+..+...
T Consensus 374 ~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 374 EAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 455556788899999997777776532 2211 1256889999999999999999999999999988876
No 203
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=36.56 E-value=1e+02 Score=22.09 Aligned_cols=26 Identities=8% Similarity=0.144 Sum_probs=20.2
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHH
Q 001585 92 HILVFVAQVPPLLRVQLGECLKTIIH 117 (1049)
Q Consensus 92 ~ll~~L~~~~~~ir~~l~~~i~~Ia~ 117 (1049)
.|++.|.+.+..++...+-+++.|++
T Consensus 16 ~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 16 PLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 35555567888999999999988874
No 204
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=36.45 E-value=62 Score=24.35 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhh
Q 001585 85 DKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHAD 119 (1049)
Q Consensus 85 ~k~~ir~~ll~~L~~~~~~ir~~l~~~i~~Ia~~d 119 (1049)
+.+++|+-+++.|...+.. |.++..+|+.+.+.+
T Consensus 3 n~eYLKNVll~fl~~~e~~-r~~ll~vi~tlL~fs 36 (46)
T smart00755 3 NFEYLKNVLLQFLTLRESE-RETLLKVISTVLQLS 36 (46)
T ss_pred cHHHHHHHHHHHhccCcch-HHHHHHHHHHHhCCC
Confidence 4578999999999766655 899999999887654
No 205
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=36.08 E-value=3e+02 Score=33.62 Aligned_cols=56 Identities=25% Similarity=0.227 Sum_probs=35.6
Q ss_pred cCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHHHHhc
Q 001585 485 FSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRD-PELPVRVDSVFALRSFVEAC 547 (1049)
Q Consensus 485 l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d-~~~~V~~~Aa~AL~~~~~~~ 547 (1049)
.++.+-=+|+.|...+|- +.|++|+.+ +.+++.|.. -++-||..||.||.-+|...
T Consensus 564 VsD~nDDVrRaAVialGF---Vl~~dp~~~----~s~V~lLses~N~HVRyGaA~ALGIaCAGt 620 (929)
T KOG2062|consen 564 VSDVNDDVRRAAVIALGF---VLFRDPEQL----PSTVSLLSESYNPHVRYGAAMALGIACAGT 620 (929)
T ss_pred ccccchHHHHHHHHHhee---eEecChhhc----hHHHHHHhhhcChhhhhhHHHHHhhhhcCC
Confidence 345555677777777765 345666553 344455543 35668888888888877664
No 206
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=35.42 E-value=1.6e+02 Score=36.05 Aligned_cols=101 Identities=16% Similarity=0.167 Sum_probs=62.4
Q ss_pred cCCCCcchhHHHHHHHHHhhccccCChhHHH-----HHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccc-ccccc-cch
Q 001585 485 FSSPVGHLRAKAAWVAGQYAHINFSDQNNFR-----KALHSVVSGLRDPELPVRVDSVFALRSFVEACRD-LNEIR-PIL 557 (1049)
Q Consensus 485 l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~-----~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~-~~~l~-p~l 557 (1049)
+.++.|.++++|.-++...+ |.+.+... .-++.++..|.+.+.-|+..||.||++++..... ...+. +..
T Consensus 242 L~~q~~~~qsnaaaylQHlc---fgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~ 318 (717)
T KOG1048|consen 242 LMSQDPSVQSNAAAYLQHLC---FGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKEL 318 (717)
T ss_pred HhccChhhhHHHHHHHHHHH---hhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhc
Confidence 45678899999988887654 23332222 2256677788888888999999999999987642 11121 333
Q ss_pred HHHHHHHHHHhhhhchhhHHHHHHHHHHHccC
Q 001585 558 PQLLDEFFKLMNEVENEDLVFTLETIVDKFGE 589 (1049)
Q Consensus 558 ~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~ 589 (1049)
+.+ -.++.++..+...++-..+..+..+++.
T Consensus 319 ~Gv-~~l~~~Lr~t~D~ev~e~iTg~LWNLSS 349 (717)
T KOG1048|consen 319 NGV-PTLVRLLRHTQDDEVRELITGILWNLSS 349 (717)
T ss_pred CCh-HHHHHHHHhhcchHHHHHHHHHHhcccc
Confidence 322 2344555655555555555555555443
No 207
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=34.24 E-value=4.4e+02 Score=33.32 Aligned_cols=134 Identities=13% Similarity=0.206 Sum_probs=93.0
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhcc----ccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHH
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFP----EFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHS 520 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p----~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ 520 (1049)
|....--++..++.++..+.. .+..+ ...++| -+....+.+|..+..++-.|+... .+..+.+.
T Consensus 308 N~~v~~~aa~~l~~ia~~lr~------~~~~~-~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~-----~l~~~~~~ 375 (815)
T KOG1820|consen 308 NINVVMLAAQILELIAKKLRP------LFRKY-AKNVFPSLLDRLKEKKSELRDALLKALDAILNST-----PLSKMSEA 375 (815)
T ss_pred chhHHHHHHHHHHHHHHhcch------hhHHH-HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc-----cHHHHHHH
Confidence 444455556666777766543 12222 223444 344567899999999988887622 47889999
Q ss_pred HHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchh---hHHHHHHHHHHHccCc
Q 001585 521 VVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE---DLVFTLETIVDKFGEE 590 (1049)
Q Consensus 521 ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~---~l~~~l~~iv~~~~~~ 590 (1049)
++.++.+.++.++......+.+.+..........+-+..++..+....++.+.+ ....++..++..+|++
T Consensus 376 I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 376 ILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred HHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999988876434556677778888888888776655 2455666667776665
No 208
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=33.62 E-value=1.2e+02 Score=36.97 Aligned_cols=122 Identities=15% Similarity=0.120 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHHHhc----c---cchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhH
Q 001585 401 SPRTASMDFVSELVRKR----G---KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSEL 473 (1049)
Q Consensus 401 s~R~aA~~ll~~L~~~~----~---~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~ 473 (1049)
-.|.+|.--+.+++.++ + ..+...+.+++.+.|.+..+. .+-..+-.+|.++|.++.. ..
T Consensus 412 ~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~~~LkaLGN~g~~---------~~ 478 (574)
T smart00638 412 YLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSK----GDEEEIQLYLKALGNAGHP---------SS 478 (574)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhc----CCchheeeHHHhhhccCCh---------hH
Confidence 35566665555665533 1 122355667777766553221 1334577788888876542 11
Q ss_pred HHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCC--CCCchHHHHHHHHHH
Q 001585 474 ERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRD--PELPVRVDSVFALRS 542 (1049)
Q Consensus 474 ~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d--~~~~V~~~Aa~AL~~ 542 (1049)
...+..++. .-....+++|..|+|.+.+.+... + ..+.+.++..+.+ .+.-||+.|+.+|-.
T Consensus 479 i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~--p----~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 479 IKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRD--P----RKVQEVLLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred HHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhC--c----hHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 222333332 112346799999999999887522 2 2233333444333 344599988777653
No 209
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=33.20 E-value=2.3e+02 Score=27.88 Aligned_cols=48 Identities=15% Similarity=0.202 Sum_probs=32.8
Q ss_pred chhhHHHHHHHhcccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001585 761 PAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIA 809 (1049)
Q Consensus 761 ~a~~ll~~ii~~~~~~~~~~l~~il~~~l~~l~~~~~~~~~~~~l~v~~ 809 (1049)
.+...+..|+..++..-.+|++.++..++..+.+... .++.+++.-++
T Consensus 106 ~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~-~~~e~~~~qL~ 153 (160)
T PF11865_consen 106 AVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPD-SLREFYFQQLA 153 (160)
T ss_pred HHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCH-HHHHHHHHHHH
Confidence 4666667777666666678999999998888876544 55555544333
No 210
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=33.10 E-value=3.7e+02 Score=28.39 Aligned_cols=141 Identities=16% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCchhhhhchhhHHHHHHHHhhhccccChhhHhhhhcCHHHHHhHhcCcccccCCHHHHHHHHHHHHH
Q 001585 335 TNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELV 414 (1049)
Q Consensus 335 ~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aA~~ll~~L~ 414 (1049)
++.++..+..++++++++..| +..=+...++|++.-+..+ .-+...|-+|..++..|+
T Consensus 96 VcnaL~LlQcvASHpdTr~~F---L~A~iPlylYpfL~Tt~~~-------------------r~fEyLRLtsLGVIgaLv 153 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAF---LRAHIPLYLYPFLNTTSKS-------------------RPFEYLRLTSLGVIGALV 153 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHH---HHccChhhhHHhhhccccC-------------------CchHHHhHHHHHHHHHHH
Q ss_pred HhcccchHHH-----HHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHH------HhhhcCCCchhhHHHHHHHhhcc
Q 001585 415 RKRGKENLQK-----FIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALC------DKLKQTEPYKSELERMLVQHVFP 483 (1049)
Q Consensus 415 ~~~~~~~~~~-----~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la------~~l~~~~~~~~~~~~~l~~~v~p 483 (1049)
+.-.+++... ++++|...+... .-..|-.|.++++-|- .++...-+--..+...+.+.|..
T Consensus 154 k~dd~eVi~fLl~TeIVPlCLrime~G--------SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~ 225 (293)
T KOG3036|consen 154 KNDDQEVIRFLLTTEIVPLCLRIMESG--------SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQ 225 (293)
T ss_pred hcCcHHHHHHHHHhhhHHHHHHHHhcc--------cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHH
Q ss_pred ccCCCCcchhHHHHHHHHHhhc
Q 001585 484 EFSSPVGHLRAKAAWVAGQYAH 505 (1049)
Q Consensus 484 ~l~~~~~~lr~ra~~~l~~~~~ 505 (1049)
..+.+.+.+---++.++-+.++
T Consensus 226 l~~~ps~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 226 LVSMPSPRLLKHVIRCYLRLSD 247 (293)
T ss_pred HhcCCCHHHHHHHHHHHHHhcC
No 211
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=32.95 E-value=1.4e+02 Score=26.32 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhhhh---------hHHHHHHHHHHHHH
Q 001585 102 PLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---------QVYGALFVLRILSR 152 (1049)
Q Consensus 102 ~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~---------~~~~~L~~L~~i~k 152 (1049)
-.+|...|.+++.|++. |....|+|-+.+...+... ..+||+..|..+-.
T Consensus 20 ~~LRd~AA~lL~~I~~~-~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 20 WALRDFAASLLAQICRK-FSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred HHHHHHHHHHHHHHHHH-hccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 47899999999999976 6667777777776666432 46899999987743
No 212
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=32.93 E-value=8e+02 Score=28.11 Aligned_cols=120 Identities=10% Similarity=0.071 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccc
Q 001585 405 ASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPE 484 (1049)
Q Consensus 405 aA~~ll~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~ 484 (1049)
++.-++.-+.....+++...++.++..+|+++ +.+.. +++-.+....+. + .++| ++.
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d----------~sr~~---lf~~~a~~~k~~-~----~~~f-----l~l 122 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSED----------RSRVD---LFHDYAHKLKRT-E----WLSF-----LNL 122 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhC----------chHHH---HHHHHHHhhhcc-c----hHHH-----HHH
Confidence 33334444444456778888999999999764 22322 333333333222 1 2233 234
Q ss_pred cCCCCcchhHHHHHHHHHhhcc---ccCChhHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHHHHhcc
Q 001585 485 FSSPVGHLRAKAAWVAGQYAHI---NFSDQNNFRKALHSVVSGLRD-PELPVRVDSVFALRSFVEACR 548 (1049)
Q Consensus 485 l~~~~~~lr~ra~~~l~~~~~~---~f~~~~~~~~~~~~ll~~L~d-~~~~V~~~Aa~AL~~~~~~~~ 548 (1049)
+...++++...+.|++++++.+ .... ..+.-....+-..|++ .+.--...|+++|+.++..++
T Consensus 123 l~r~d~~iv~~~~~Ils~la~~g~~~~~~-~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e 189 (442)
T KOG2759|consen 123 LNRQDTFIVEMSFRILSKLACFGNCKMEL-SELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE 189 (442)
T ss_pred HhcCChHHHHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc
Confidence 5677889988888888887542 2111 1234445555555654 444566778999999998865
No 213
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=32.56 E-value=7.1e+02 Score=27.37 Aligned_cols=60 Identities=7% Similarity=-0.017 Sum_probs=45.0
Q ss_pred CCCcchhHHHHHHHHHhhccccCCh--hH----HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 001585 487 SPVGHLRAKAAWVAGQYAHINFSDQ--NN----FRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 546 (1049)
Q Consensus 487 ~~~~~lr~ra~~~l~~~~~~~f~~~--~~----~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~ 546 (1049)
.+...++.-+|..+|++.+-.-.+. +. -..+++.++.|+..++.-|.-.|..+++++...
T Consensus 93 addasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf 158 (524)
T KOG4413|consen 93 ADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF 158 (524)
T ss_pred CCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc
Confidence 4667899999999999865211111 11 246789999999998888999999999987755
No 214
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=32.37 E-value=6.3e+02 Score=27.04 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHhhCccHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHhccc
Q 001585 797 KSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALT 872 (1049)
Q Consensus 797 ~~~~~~~~l~v~~~~~~~~p~~~l~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~dkKl~~lal~~ll~~~ 872 (1049)
..+++...++||+.++-.+-..++++|-+. .++-.++..+. +.+..-|.+++.=+-++|...
T Consensus 109 ~E~LRLtsLGVIgaLvK~d~~evi~fLl~t----EiiplcLr~me----------~GselSKtvAtfIlqKIL~dd 170 (262)
T PF04078_consen 109 FEYLRLTSLGVIGALVKTDDPEVISFLLQT----EIIPLCLRIME----------FGSELSKTVATFILQKILLDD 170 (262)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHCT----THHHHHHHHHH----------HS-HHHHHHHHHHHHHHHHSH
T ss_pred cchhhHhHHHHHHHHHcCCcHHHHHHHHhh----chHHHHHHHHH----------hccHHHHHHHHHHHHHHHcch
Confidence 577888999999999988888889888754 34444545554 345666777777777777653
No 215
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=32.00 E-value=1.2e+03 Score=29.69 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHhcCCCC-CCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhh
Q 001585 512 NNFRKALHSVVSGLRDP-ELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE 570 (1049)
Q Consensus 512 ~~~~~~~~~ll~~L~d~-~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~ 570 (1049)
-.++.++-.+++.+.++ ...-+.+-..++.+++.. .++.+.|....+++.|.++...
T Consensus 529 ~~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~--~~~~i~pl~~~il~~L~~lv~~ 586 (947)
T COG5657 529 GLLENLILLVLSLMASPSSLEEREFLLQLISRIIII--DPELIAPLGSEILQLLDNLVEI 586 (947)
T ss_pred ccHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHh--CHHhhhhhHHHHHHHHHHHHHH
Confidence 35677777788888764 445788889999999987 4788999888888888887754
No 216
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=31.72 E-value=98 Score=30.62 Aligned_cols=49 Identities=29% Similarity=0.441 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhhCCCCch-----hHHHHHHHHhhhh---hHHHHHHHHHHHHHhcc
Q 001585 107 QLGECLKTIIHADYPEQWP-----HLLDWVKHNLQDQ---QVYGALFVLRILSRKYE 155 (1049)
Q Consensus 107 ~l~~~i~~Ia~~d~P~~Wp-----~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~ 155 (1049)
.++.+++.+....-|+.|+ +++|.+..+|+|. .+..||.+|..+++.|+
T Consensus 45 vlvD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~ 101 (164)
T PF13925_consen 45 VLVDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFG 101 (164)
T ss_pred HHHHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 3577777777656667785 8999999999988 57899999999999983
No 217
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=31.69 E-value=65 Score=21.28 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=12.2
Q ss_pred cchhHHHHHHHHHhh
Q 001585 490 GHLRAKAAWVAGQYA 504 (1049)
Q Consensus 490 ~~lr~ra~~~l~~~~ 504 (1049)
+.+|.+|.+.+|++.
T Consensus 1 ~~vR~~aa~aLg~~~ 15 (30)
T smart00567 1 PLVRHEAAFALGQLG 15 (30)
T ss_pred CHHHHHHHHHHHHcC
Confidence 358999999999874
No 218
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.10 E-value=2.7e+02 Score=30.41 Aligned_cols=109 Identities=16% Similarity=0.173 Sum_probs=66.8
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhc
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 524 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~ 524 (1049)
+|..+--+|..|..++..-.+. ...++...+. .|+..++++..-+-+.||-+++-..+.. +. ...+.+..++..
T Consensus 101 dW~~~vdgLn~irrLs~fh~e~--l~~~L~~vii-~vvkslKNlRS~VsraA~~t~~difs~l--n~-~i~~~ld~lv~~ 174 (334)
T KOG2933|consen 101 DWEDKVDGLNSIRRLSEFHPES--LNPMLHEVII-AVVKSLKNLRSAVSRAACMTLADIFSSL--NN-SIDQELDDLVTQ 174 (334)
T ss_pred HHHHHhhhHHHHHHHHhhhHHH--HHHHHHHHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHH
Confidence 8999999999999888764332 2233444332 3455667776678888999998764422 22 222333333333
Q ss_pred C-C---CCCCchHHHHHHHHHHHHHhcccccccccchHHH
Q 001585 525 L-R---DPELPVRVDSVFALRSFVEACRDLNEIRPILPQL 560 (1049)
Q Consensus 525 L-~---d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~i 560 (1049)
| . ..+.-|+..|-.||..+..+. .+..+.|.+.+.
T Consensus 175 Ll~ka~~dnrFvreda~kAL~aMV~~v-tp~~~L~~L~~~ 213 (334)
T KOG2933|consen 175 LLHKASQDNRFVREDAEKALVAMVNHV-TPQKLLRKLIPI 213 (334)
T ss_pred HHhhhcccchHHHHHHHHHHHHHHhcc-ChHHHHHHHHHH
Confidence 3 2 234569999999999999876 243344443333
No 219
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.04 E-value=1.2e+03 Score=29.46 Aligned_cols=162 Identities=16% Similarity=0.193 Sum_probs=79.6
Q ss_pred HhhHHHHHHHHcccc-hhhHHHHHHHHHHHHhhcCCCCCHHHHH--HHHHHHHHHhh-hHhhhHhhhHHhhhhHhhcCcc
Q 001585 652 EPTLLPIMRRMLTTD-GQEVFEEVLEIVSYMTFFSPTISLEMWS--LWPLMMEALAD-WAIDFFPNILVPLDNYISRGTA 727 (1049)
Q Consensus 652 ~~~~~p~i~~~l~~~-~~~~~~~~l~ll~~l~~~~~~isp~l~~--l~~~l~~~~~~-~~~~~l~~~~~~L~~~i~~~~~ 727 (1049)
...++|++..+|+.+ ..|++--+..-+..|....|.-+..... ..|.++.-+.. ...|.-+..+..|+-.-+..+.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 357889999998754 3577778888888888766543333332 44554444321 1233444556666655555566
Q ss_pred cccccCCcchHHHHHHHHHHHhcCCCCCCcccCchhhHHHHHHHhcccCchhchHHHHHHHHHHHHhhhhhHH--HHHHH
Q 001585 728 HFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYL--KCLLV 805 (1049)
Q Consensus 728 ~~l~~~~~~~~~~i~~i~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~l~~l~~~~~~~~--~~~~l 805 (1049)
.+++. ..+..++..+.-+ + -..+..|..+...+-.+++..-..++...+..+.++|+....+.+ ...++
T Consensus 289 AiL~A---G~l~a~LsylDFF-S-----i~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~ 359 (1051)
T KOG0168|consen 289 AILQA---GALSAVLSYLDFF-S-----IHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICL 359 (1051)
T ss_pred HHHhc---ccHHHHHHHHHHH-H-----HHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 66653 3444444433221 1 111112333333222333332223455555555566665433332 22233
Q ss_pred HHHHHHHhhCHHHHHHH
Q 001585 806 QVIADALYYNSSLTLSI 822 (1049)
Q Consensus 806 ~v~~~~~~~~p~~~l~~ 822 (1049)
.=++-.+.++|+.+-++
T Consensus 360 ~ri~d~f~h~~~kLdql 376 (1051)
T KOG0168|consen 360 TRIADGFQHGPDKLDQL 376 (1051)
T ss_pred HHHHHhcccChHHHHHH
Confidence 33344445566654443
No 220
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=30.72 E-value=2.8e+02 Score=33.83 Aligned_cols=94 Identities=19% Similarity=0.181 Sum_probs=53.0
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCC-----chhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHH
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEP-----YKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALH 519 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~-----~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~ 519 (1049)
....+.+|+.++|++........+ ....+.+++...+-.........-+-.++..||.... ...+.
T Consensus 410 ~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~---------~~~i~ 480 (574)
T smart00638 410 QPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH---------PSSIK 480 (574)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC---------hhHHH
Confidence 567899999999999985432221 1234444444433322222233334445666766542 22223
Q ss_pred HHHhcCC-C--CCCchHHHHHHHHHHHHHhc
Q 001585 520 SVVSGLR-D--PELPVRVDSVFALRSFVEAC 547 (1049)
Q Consensus 520 ~ll~~L~-d--~~~~V~~~Aa~AL~~~~~~~ 547 (1049)
.+...+. + ....+|..|+.||+++...+
T Consensus 481 ~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~ 511 (574)
T smart00638 481 VLEPYLEGAEPLSTFIRLAAILALRNLAKRD 511 (574)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 3333332 3 34569999999999887654
No 221
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.64 E-value=9.4e+02 Score=29.29 Aligned_cols=55 Identities=24% Similarity=0.152 Sum_probs=46.3
Q ss_pred cchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001585 490 GHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 547 (1049)
Q Consensus 490 ~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~ 547 (1049)
-=+|..|..-++..+. ..|......+..++..++|..-.||+.|..||..+..+.
T Consensus 387 ~EVR~AAV~Sl~~La~---ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l 441 (823)
T KOG2259|consen 387 YEVRRAAVASLCSLAT---SSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHL 441 (823)
T ss_pred HHHHHHHHHHHHHHHc---CCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh
Confidence 3488888888888764 245677889999999999999999999999999998774
No 222
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=30.20 E-value=1.5e+02 Score=31.49 Aligned_cols=161 Identities=12% Similarity=0.173 Sum_probs=87.7
Q ss_pred HHHHHHHHhcccCC-CCcCC--CCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHH----hhccccCC-----CCcch
Q 001585 425 FIQFIVGIFKRYDE-TPVEY--KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ----HVFPEFSS-----PVGHL 492 (1049)
Q Consensus 425 ~~~~i~~~l~~~~~-~~~~~--~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~----~v~p~l~~-----~~~~l 492 (1049)
+...++++++-|.. +|.+. .....-..|+.++.++|..-. .+ ..|+.. ++.|.|+. +.-+|
T Consensus 40 i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpe----tr---~~Fl~a~iplyLyPfL~tt~k~r~~E~L 112 (262)
T PF04078_consen 40 IAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPE----TR---MPFLKAHIPLYLYPFLNTTSKTRPFEYL 112 (262)
T ss_dssp HHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TT----TH---HHHHHTTGGGGGHHHHH----SHHHHHH
T ss_pred HHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChH----HH---HHHHHcCchhhehhhhhccccccccchh
Confidence 44556677766643 12111 113456677778888886421 11 123333 34455542 24689
Q ss_pred hHHHHHHHHHhhccccCChhH-----HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHH
Q 001585 493 RAKAAWVAGQYAHINFSDQNN-----FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKL 567 (1049)
Q Consensus 493 r~ra~~~l~~~~~~~f~~~~~-----~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~l 567 (1049)
|-.++-++|...+.. +++. -..++|..++.|...+..-|.-|.--++.++.+.. +|--.
T Consensus 113 RLtsLGVIgaLvK~d--~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~--------------GL~yi 176 (262)
T PF04078_consen 113 RLTSLGVIGALVKTD--DPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDV--------------GLNYI 176 (262)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHH--------------HHHHH
T ss_pred hHhHHHHHHHHHcCC--cHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchh--------------HHHHH
Confidence 999999999987632 3321 13467777777765555667777777777776531 11111
Q ss_pred hhhhc-hhhHHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHh
Q 001585 568 MNEVE-NEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMN 611 (1049)
Q Consensus 568 l~~~~-~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~ 611 (1049)
-+..+ ...+..++..++....++- .+.+..+++.++.++.+
T Consensus 177 C~t~eRf~av~~vL~~mV~~l~~~p---S~RLLKhIIrCYlRLsd 218 (262)
T PF04078_consen 177 CQTAERFFAVAMVLNKMVEQLVKQP---SPRLLKHIIRCYLRLSD 218 (262)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHHHHHHccCC---ChhHHHHHHHHHHHHcc
Confidence 11111 1135667777776664443 34777777777777653
No 223
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=30.06 E-value=6.9e+02 Score=30.34 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=12.1
Q ss_pred hhchHHHHHHHHHHHHh
Q 001585 778 DHWVEPYLRITVERLRR 794 (1049)
Q Consensus 778 ~~~l~~il~~~l~~l~~ 794 (1049)
..|++.++..++..+..
T Consensus 106 ~~yl~~vl~~LV~~f~p 122 (563)
T PF05327_consen 106 PKYLSPVLSMLVKNFIP 122 (563)
T ss_dssp GGGHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHhccC
Confidence 46777888887776654
No 224
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=29.94 E-value=5.5e+02 Score=25.27 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=32.4
Q ss_pred cCChHHHHHHHh-hHHHHHHHHcccchhhHHHHHHHHHHHHhhcCC
Q 001585 642 SRLPHLFVQIEP-TLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP 686 (1049)
Q Consensus 642 ~~~~~~~~~l~~-~~~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~ 686 (1049)
.++|..+..+.+ .-++-+-..|+....+...+++.|+.++...++
T Consensus 89 l~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 89 LNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred hCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 346666666653 346777777777777888899999999987654
No 225
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=29.93 E-value=7.4e+02 Score=29.41 Aligned_cols=142 Identities=13% Similarity=0.212 Sum_probs=73.3
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhh---chhhHHHHHHHHHHHc---
Q 001585 514 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV---ENEDLVFTLETIVDKF--- 587 (1049)
Q Consensus 514 ~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~---~~~~l~~~l~~iv~~~--- 587 (1049)
++-+|.-+...+.+.+.+.|-.|-.+|++ ..-|.+.+|-.+..+..-...- .+-.+...+..++..+
T Consensus 205 lQlYy~~It~a~~g~~~~~r~eAL~sL~T-------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N 277 (576)
T KOG2549|consen 205 LQLYYKEITEACTGSDEPLRQEALQSLET-------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN 277 (576)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhcc-------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC
Confidence 45666777776666777778777666652 3333333333333332222111 1112222223333333
Q ss_pred -cCcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccc
Q 001585 588 -GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTD 666 (1049)
Q Consensus 588 -~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~~~ 666 (1049)
.=.+.||..+|+..+..++.. ++-...|.. ++....+-...+.+..|+.- .+..+..+..+++..+..++...
T Consensus 278 p~i~lepYlh~L~PSvlTCvVs--k~l~~~p~~-dnhwaLRDfAA~ll~~i~k~---f~~~y~~L~~Rit~tl~k~l~D~ 351 (576)
T KOG2549|consen 278 PNIFLEPYLHQLVPSVLTCVVS--KNLCLRPEL-DNHWALRDFAARLLAQICKN---FSTLYNNLQPRITRTLSKALLDN 351 (576)
T ss_pred CccchhhHHHHHhhHHHHhhhh--hhccCCccc-cchHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHhcCC
Confidence 233778888888777655422 222222311 22333344455556655544 44557778888888888888655
Q ss_pred hh
Q 001585 667 GQ 668 (1049)
Q Consensus 667 ~~ 668 (1049)
..
T Consensus 352 ~~ 353 (576)
T KOG2549|consen 352 KK 353 (576)
T ss_pred CC
Confidence 43
No 226
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=29.19 E-value=5e+02 Score=25.53 Aligned_cols=63 Identities=8% Similarity=0.249 Sum_probs=38.4
Q ss_pred CchhhHHHHHHHhcccCchhchHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHhhCHHHHHHHH
Q 001585 760 EPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEK--SYLKCLLVQVIADALYYNSSLTLSIL 823 (1049)
Q Consensus 760 ~~a~~ll~~ii~~~~~~~~~~l~~il~~~l~~l~~~~~--~~~~~~~l~v~~~~~~~~p~~~l~~L 823 (1049)
..+.+++..++.+.+..+..-++-++..++.++-..++ ..-+...++++.... .+|..++.+-
T Consensus 91 ~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~-~~p~~l~~lf 155 (168)
T PF12783_consen 91 SRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELC-KDPQFLVDLF 155 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH-hChhHHHHHH
Confidence 34677777777776666655566777777776654332 234445566665543 5777666544
No 227
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=28.95 E-value=1.4e+02 Score=27.80 Aligned_cols=46 Identities=11% Similarity=0.202 Sum_probs=38.2
Q ss_pred HhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001585 502 QYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 547 (1049)
Q Consensus 502 ~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~ 547 (1049)
.++.+.+.++..+..++..+...|++.++.|+..|-..|..+|...
T Consensus 24 Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G 69 (122)
T cd03572 24 EIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG 69 (122)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC
Confidence 4444455566678999999999999999999999999999999875
No 228
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=28.62 E-value=8.9e+02 Score=29.38 Aligned_cols=21 Identities=5% Similarity=0.173 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001585 881 LGRVFRATLDLLVAYKEQVAE 901 (1049)
Q Consensus 881 ~~~~~~~~~~ll~~l~~~~~~ 901 (1049)
-..++..+++-|..+--+++-
T Consensus 199 ~~~Il~lIi~rLi~iDVeiq~ 219 (563)
T PF05327_consen 199 RSDILSLIIERLIKIDVEIQI 219 (563)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccc
Confidence 345666666666655434443
No 229
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=28.61 E-value=1.2e+03 Score=28.88 Aligned_cols=57 Identities=11% Similarity=-0.074 Sum_probs=41.3
Q ss_pred CcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001585 489 VGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 547 (1049)
Q Consensus 489 ~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~ 547 (1049)
+|=+-+.++.|+|+|.+|.--+--.-...++.+..+|+- ..+|.+||.|+-.++..+
T Consensus 206 npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~i--eelR~aac~cilaiVsKk 262 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLNI--EELRIAACNCILAIVSKK 262 (980)
T ss_pred CchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHhH--HHHHHHHHHHHHHHHhcC
Confidence 677889999999999887511110113456666667763 359999999999999875
No 230
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=28.36 E-value=1.6e+03 Score=30.16 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=41.6
Q ss_pred cCchhhHHHHHHHhcccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhCHHHH
Q 001585 759 IEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLT 819 (1049)
Q Consensus 759 ~~~a~~ll~~ii~~~~~~~~~~l~~il~~~l~~l~~~~~~~~~~~~l~v~~~~~~~~p~~~ 819 (1049)
+..|..++..|+......++.--++++...+.|+.. ....++.-++...-.|+..+|...
T Consensus 276 Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D-~~~~vR~~~v~~~~~~l~~~~~~~ 335 (1266)
T KOG1525|consen 276 RLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFND-ISVEVRMECVESIKQCLLNNPSIA 335 (1266)
T ss_pred HHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhcc-CChhhhhhHHHHhHHHHhcCchhh
Confidence 456777877777665444445556788888888764 345677777888888888787643
No 231
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=27.93 E-value=6.9e+02 Score=30.64 Aligned_cols=114 Identities=9% Similarity=0.132 Sum_probs=71.8
Q ss_pred HHHHHHhcc-cchHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccC--
Q 001585 410 VSELVRKRG-KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS-- 486 (1049)
Q Consensus 410 l~~L~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~-- 486 (1049)
++.|.++.+ ..+.+.+++++..-+.. .+....+.+|..+..+++.+. .+++.+.|+|.+.
T Consensus 374 mdlL~~Kt~~e~~~~~IlplL~~S~~~--------~~~~iQ~~~L~~lptv~e~iD---------~~~vk~~ilP~l~~l 436 (700)
T KOG2137|consen 374 MDLLKEKTPPEEVKEKILPLLYRSLED--------SDVQIQELALQILPTVAESID---------VPFVKQAILPRLKNL 436 (700)
T ss_pred HHHHHhhCChHHHHHHHHHHHHHHhcC--------cchhhHHHHHHhhhHHHHhcc---------HHHHHHHHHHHhhcc
Confidence 344555553 45667777777666543 267889999999999998763 2456667777654
Q ss_pred ---CCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 001585 487 ---SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRS 542 (1049)
Q Consensus 487 ---~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~ 542 (1049)
.....+|-.++-|++.+.+- .+.-.....+..++.+++..++.+...-....+.
T Consensus 437 ~~~tt~~~vkvn~L~c~~~l~q~--lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~ 493 (700)
T KOG2137|consen 437 AFKTTNLYVKVNVLPCLAGLIQR--LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEA 493 (700)
T ss_pred hhcccchHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 34678999999999998742 2322334455556667765554444333333333
No 232
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=27.51 E-value=1.5e+02 Score=30.56 Aligned_cols=110 Identities=18% Similarity=0.172 Sum_probs=70.7
Q ss_pred HHHHHHHHhcccCCCCcCCCCchhhhHH-HHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHh
Q 001585 425 FIQFIVGIFKRYDETPVEYKPYRQKDGA-LLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQY 503 (1049)
Q Consensus 425 ~~~~i~~~l~~~~~~~~~~~~w~~keaa-l~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~ 503 (1049)
.+..+...+.. ..||-.-|.. -.++|.+...- + .+ ...+.....+++++.|+.++.++-.+
T Consensus 86 ~~~~~~~~~~~-------~~~W~~~D~~~~~~~~~~~~~~---~----~~----~~~~~~W~~s~~~w~rR~~~v~~~~~ 147 (213)
T PF08713_consen 86 DLELLEKWLPD-------IDNWATCDSLCSKLLGPLLKKH---P----EA----LELLEKWAKSDNEWVRRAAIVMLLRY 147 (213)
T ss_dssp HHHHHHHCCCC-------CCCHHHHHHHTHHHHHHHHHHH---G----GH----HHHHHHHHHCSSHHHHHHHHHCTTTH
T ss_pred HHHHHHHHhcc-------CCcchhhhHHHHHHHHHHHHhh---H----HH----HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 34555555542 2389888887 55555543221 1 11 22344455688999999888776444
Q ss_pred hccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHH
Q 001585 504 AHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQ 559 (1049)
Q Consensus 504 ~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~ 559 (1049)
.. ......++..+...+.|++.-||-..+.+|+.+.... ++.+.+|+..
T Consensus 148 ~~-----~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~--~~~v~~~l~~ 196 (213)
T PF08713_consen 148 IR-----KEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKD--PDEVLEFLQK 196 (213)
T ss_dssp GG-----GCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT---HHHHHHHHHH
T ss_pred HH-----hcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhC--HHHHHHHHHH
Confidence 32 1457888999999999999999999999999887663 4555555443
No 233
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=27.46 E-value=4.4e+02 Score=24.90 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc
Q 001585 512 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR 548 (1049)
Q Consensus 512 ~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~ 548 (1049)
.....++.++.+.|.+.++.|+..|...|..++.+|.
T Consensus 33 ~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg 69 (133)
T smart00288 33 DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCG 69 (133)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC
Confidence 4568889999999999999999999999999999974
No 234
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=27.40 E-value=4.8e+02 Score=26.92 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=22.5
Q ss_pred CCCCCchHHHHHHHHHHHHhhChHHHHHHhcCCCHHHHHHHHHHHH
Q 001585 981 PIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVAQ 1026 (1049)
Q Consensus 981 pl~~vd~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~ 1026 (1049)
|+|=-|+|. |-=.|+.|.. |++. |..-=+|+.|+++-+.||
T Consensus 121 PVDINDPYD-lGLLLRhLRH-HSNL---LAnIgdP~VreqVLsAMq 161 (238)
T PF02084_consen 121 PVDINDPYD-LGLLLRHLRH-HSNL---LANIGDPEVREQVLSAMQ 161 (238)
T ss_pred ccccCChhh-HHHHHHHHHH-HHHH---HhhcCCHHHHHHHHHHHh
Confidence 555336664 3334455543 2332 222338999998777776
No 235
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=26.97 E-value=60 Score=39.25 Aligned_cols=70 Identities=30% Similarity=0.494 Sum_probs=0.0
Q ss_pred hhhhccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001585 904 KDEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPID 983 (1049)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 983 (1049)
.+.+...+|+.++.+.++.+++.+++++|++.+.+|.+++... ..++.++++|++.+++..-.--.+
T Consensus 876 ~d~~~deddd~d~~s~~~~e~~~~Ed~dEdi~~~~D~~~D~~d-------------~~d~~e~e~d~~~~~e~~~~~g~d 942 (988)
T KOG2038|consen 876 DDVDADEDDDEDENSLGSEEDGGEEDDDEDIGDSDDDEDDTSD-------------AEDDFEDEDDDEVDDEDGGEGGKD 942 (988)
T ss_pred cccccccccccchhcccCcccccccccchhccccccccccchh-------------hccccccccccccccccccccCcc
Q ss_pred CCc
Q 001585 984 EVD 986 (1049)
Q Consensus 984 ~vd 986 (1049)
+.|
T Consensus 943 ~~d 945 (988)
T KOG2038|consen 943 DAD 945 (988)
T ss_pred ccc
No 236
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.68 E-value=1.2e+03 Score=28.61 Aligned_cols=150 Identities=15% Similarity=0.211 Sum_probs=72.5
Q ss_pred hHHHHHH-HHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchh--------hHHHHHHH
Q 001585 512 NNFRKAL-HSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE--------DLVFTLET 582 (1049)
Q Consensus 512 ~~~~~~~-~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~--------~l~~~l~~ 582 (1049)
+++-.++ |.+...|+-++..||..|+.-+-.+.... .++.-+--...+|++=+..+...=.+ .+..+...
T Consensus 169 eml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~-dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~ 247 (1005)
T KOG1949|consen 169 EMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR-DPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKI 247 (1005)
T ss_pred HHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC-CCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 3433333 34456677778889999988887777654 23333344455666555444321111 11122211
Q ss_pred HHHHccCccccc--HHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHH
Q 001585 583 IVDKFGEEMAPY--ALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMR 660 (1049)
Q Consensus 583 iv~~~~~~i~p~--~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~ 660 (1049)
+..|= ++.|- ..+++..+. -.+.. |. ..-.+..+++++.-++. +|.... +-..++|.+.
T Consensus 248 -~s~fW-e~iP~~i~~~ll~kI~---d~~a~----dt-----~s~VR~svf~gl~~~l~----np~sh~-~le~~Lpal~ 308 (1005)
T KOG1949|consen 248 -TSKFW-EMIPPTILIDLLKKIT---DELAF----DT-----SSDVRCSVFKGLPMILD----NPLSHP-LLEQLLPALR 308 (1005)
T ss_pred -HHHHH-HHcCHHHHHHHHHHHH---HHhhh----cc-----chheehhHhcCcHHHHc----Cccchh-HHHHHHHhcc
Confidence 11111 12231 112222222 22111 11 11234566777776653 343333 4456678888
Q ss_pred HHcccchhhHHHHHHHHHHHH
Q 001585 661 RMLTTDGQEVFEEVLEIVSYM 681 (1049)
Q Consensus 661 ~~l~~~~~~~~~~~l~ll~~l 681 (1049)
+.+...+...--...+++.-+
T Consensus 309 ~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 309 YSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred hhhhccchhHHHHHHHHHHHH
Confidence 888655555555566666554
No 237
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=26.13 E-value=62 Score=41.23 Aligned_cols=53 Identities=30% Similarity=0.576 Sum_probs=0.0
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCC
Q 001585 910 DDDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEE 977 (1049)
Q Consensus 910 ~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 977 (1049)
.+++.++.+.+++|++.+|+|.++++++.|.+++++. +.+.++++++.++++.
T Consensus 338 ~~~~~~~~~~~~ed~e~~ddD~e~~~ed~d~~~d~~~---------------~~~~~~d~e~~~ee~~ 390 (840)
T PF04147_consen 338 EEEEEEEEGEEDEDDEEEDDDEEEEEEDEDEDEDEED---------------EEDEESDDEDEEEEEE 390 (840)
T ss_pred ccccccccCccccccccccCccccccccccccchhhh---------------cccccccccccccccc
No 238
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=26.01 E-value=2.1e+02 Score=30.45 Aligned_cols=51 Identities=24% Similarity=0.157 Sum_probs=41.4
Q ss_pred CCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 001585 487 SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 546 (1049)
Q Consensus 487 ~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~ 546 (1049)
..+|++|.-|...+|..++ ...++.+...+.|+..+|+..+..||...-..
T Consensus 231 ~E~pMVRhEaAeALGaIa~---------e~~~~vL~e~~~D~~~vv~esc~valdm~eye 281 (289)
T KOG0567|consen 231 TEHPMVRHEAAEALGAIAD---------EDCVEVLKEYLGDEERVVRESCEVALDMLEYE 281 (289)
T ss_pred hcchHHHHHHHHHHHhhcC---------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 3589999999999998764 34566777889999999999999999866543
No 239
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=25.84 E-value=88 Score=33.97 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 001585 884 VFRATLDLLVAYKEQVAEAAK 904 (1049)
Q Consensus 884 ~~~~~~~ll~~l~~~~~~~~~ 904 (1049)
++..+.....-+++++.|-.+
T Consensus 124 v~~~~~~~~~lvkDa~~El~E 144 (275)
T PF13324_consen 124 VLRRLKQSRDLVKDALEELEE 144 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444456655433
No 240
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.71 E-value=7.6e+02 Score=25.52 Aligned_cols=94 Identities=21% Similarity=0.295 Sum_probs=56.9
Q ss_pred ccccchHHHHHHHHHHhhhhchhh---HHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHH
Q 001585 552 EIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAV 628 (1049)
Q Consensus 552 ~l~p~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~ 628 (1049)
.+-+|++-...+|. +.+... ...=+..++.+.++.+.|..++++-.|-..|..- | .. ...
T Consensus 111 dy~~yLp~F~dGL~----e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~tr------d------~e-v~~ 173 (262)
T KOG3961|consen 111 DYCPYLPLFFDGLA----ETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTR------D------DE-VIC 173 (262)
T ss_pred cchHHHHHHhhhhh----hcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhc------c------HH-HHH
Confidence 35567776666654 333332 1223344556677999999999887776554321 1 11 234
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHH
Q 001585 629 GCLRAISTILESVSRLPHLFVQIEPTLLPIMRRM 662 (1049)
Q Consensus 629 ~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~ 662 (1049)
.+|.+|..++.+.+--...+..++..++|++...
T Consensus 174 ~~Lkvlq~lv~~~~~vG~aLVPfYRQlLp~~n~~ 207 (262)
T KOG3961|consen 174 RTLKVLQQLVVSVGCVGAALVPFYRQLLPVLNTF 207 (262)
T ss_pred HHHHHHHHHHHhccccchhhhhHHHHhhhhhhhh
Confidence 6788888888776533334556788888887654
No 241
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=25.67 E-value=44 Score=42.08 Aligned_cols=7 Identities=29% Similarity=0.354 Sum_probs=2.6
Q ss_pred HHHHHhc
Q 001585 1038 EKVEKAS 1044 (1049)
Q Consensus 1038 ~~~~~~~ 1044 (1049)
+++.+++
T Consensus 1903 rr~aaas 1909 (3015)
T KOG0943|consen 1903 RRAAAAS 1909 (3015)
T ss_pred hcccccc
Confidence 3333333
No 242
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=25.42 E-value=8.7e+02 Score=26.12 Aligned_cols=109 Identities=16% Similarity=0.203 Sum_probs=73.5
Q ss_pred hHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccc
Q 001585 472 ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLN 551 (1049)
Q Consensus 472 ~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~ 551 (1049)
++...+..+.-..+++..-|++..+-.+-..| | |++-.+++..++..|.+.-.-+|.....-|+.++...+..
T Consensus 150 ~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f----~--P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~- 222 (262)
T PF14225_consen 150 NLARILSSYAKGRFRDKDDFLSQVVSYLREAF----F--PDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR- 222 (262)
T ss_pred cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh----C--chhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC-
Confidence 45555555555455544555655433333222 1 2345677777888887766679999999999999886422
Q ss_pred ccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHHccC
Q 001585 552 EIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGE 589 (1049)
Q Consensus 552 ~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~ 589 (1049)
+|+..+++.-++++++..--.+...+|+.++..-+.
T Consensus 223 --~~~~~dlispllrlL~t~~~~eAL~VLd~~v~~s~s 258 (262)
T PF14225_consen 223 --SPHGADLISPLLRLLQTDLWMEALEVLDEIVTRSGS 258 (262)
T ss_pred --CCcchHHHHHHHHHhCCccHHHHHHHHHHHHhhccc
Confidence 568889999999999765555678888888876553
No 243
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=25.42 E-value=2.1e+02 Score=27.26 Aligned_cols=18 Identities=39% Similarity=0.481 Sum_probs=10.9
Q ss_pred HHHhHHHHHHHHHHHhcC
Q 001585 1028 ADQRRVEIEKEKVEKASA 1045 (1049)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~ 1045 (1049)
.++++.+++++-+.+++|
T Consensus 114 ~EqQl~emEkeq~~qq~~ 131 (137)
T PF04281_consen 114 REQQLVEMEKEQQMQQQA 131 (137)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 366777776655555554
No 244
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=25.18 E-value=2.1e+02 Score=35.20 Aligned_cols=99 Identities=16% Similarity=0.126 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHhcccCCCCcCCCCchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCC---CCcchhHHHH
Q 001585 421 NLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSS---PVGHLRAKAA 497 (1049)
Q Consensus 421 ~~~~~~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~---~~~~lr~ra~ 497 (1049)
+...+.+++...+..... ..+-..+-.+|.++|.++.. ...+ .+.|.+.+ ....+|..|+
T Consensus 483 ~~~~~~~~l~~~l~~~~~----~~~~~~~~~~LkaLgN~g~~---------~~i~----~l~~~i~~~~~~~~~~R~~Ai 545 (618)
T PF01347_consen 483 IIEKYVPYLEQELKEAVS----RGDEEEKIVYLKALGNLGHP---------ESIP----VLLPYIEGKEEVPHFIRVAAI 545 (618)
T ss_dssp --GGGTHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHT-G---------GGHH----HHHTTSTTSS-S-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhh----ccCHHHHHHHHHHhhccCCc---------hhhH----HHHhHhhhccccchHHHHHHH
Confidence 344455555555553211 11446788889999987642 1112 33344443 3679999999
Q ss_pred HHHHHhhccccCChhHHHHHHHHHHhcCCC--CCCchHHHHHHHHHH
Q 001585 498 WVAGQYAHINFSDQNNFRKALHSVVSGLRD--PELPVRVDSVFALRS 542 (1049)
Q Consensus 498 ~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d--~~~~V~~~Aa~AL~~ 542 (1049)
|.+.+++.. . ...+.+.++..+.| .+.-||++|...|-.
T Consensus 546 ~Alr~~~~~---~---~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 546 QALRRLAKH---C---PEKVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HTTTTGGGT-------HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhc---C---cHHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 999877542 2 23455555555543 234599988765543
No 245
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=25.15 E-value=56 Score=39.99 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=14.5
Q ss_pred CcccCchhhHHHHHHHhc
Q 001585 756 DGDIEPAPKLIEVVFQNC 773 (1049)
Q Consensus 756 ~~~~~~a~~ll~~ii~~~ 773 (1049)
+.|+.+||++|..++.+-
T Consensus 9 dvDalcA~kiL~~Llk~d 26 (622)
T PF02724_consen 9 DVDALCACKILTSLLKSD 26 (622)
T ss_pred ChHHHHHHHHHHHHHHhc
Confidence 556788999999888873
No 246
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=24.61 E-value=1.8e+02 Score=29.48 Aligned_cols=64 Identities=25% Similarity=0.220 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcc----CCC-hHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcC
Q 001585 5 SLALILQGALSPNPEERKAAEHSLNQFQY----TPQ-HLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNW 70 (1049)
Q Consensus 5 ~l~~~L~~tls~d~~~r~~AE~~L~~~~~----~p~-f~~~Ll~i~~~~~~~~~iRq~Aai~lKn~i~~~W 70 (1049)
-+..+|+.+++++..+|..|=+-++..-+ +|. ..++|..+.+++ +..+|..|--.+|..-.||=
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~--~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSP--NPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCC--ChHHHHHHHHHHHHHHHHhH
Confidence 36778899999999999999888886544 664 567777776664 77899999999988777653
No 247
>PRK02922 glycogen synthesis protein GlgS; Provisional
Probab=24.59 E-value=3.6e+02 Score=21.93 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=41.0
Q ss_pred CCCCchHHHHHHHHHHHHhhChH-HHHHHhcCCCHHHHHHHHHHHHHHHHhHHH
Q 001585 982 IDEVDPFVFFVDTIKVMQASDPL-RFQNLTQTLEFQYQALANGVAQHADQRRVE 1034 (1049)
Q Consensus 982 l~~vd~~~~~~~~l~~~~~~~~~-~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~ 1034 (1049)
+....-+.|+..++.-+...... -...+.++++++++..+-+=+.++.++..+
T Consensus 6 ~ys~~~~DFlAsS~A~Me~Qgr~Idvd~V~gnmsee~r~~F~eRla~Yr~~~~~ 59 (67)
T PRK02922 6 LYSLNNFDFLARSFARMHAEGRPVDIQAVTGNMDEEHRTWFCARYAWYCQQMMQ 59 (67)
T ss_pred cccccchhHHHHHHHHHHHcCCCccHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 44456677899998877765443 468999999999999999888877777544
No 248
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.43 E-value=2.3e+02 Score=31.37 Aligned_cols=102 Identities=15% Similarity=0.103 Sum_probs=66.4
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccc-cCChhHHHHHHHHHHh
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN-FSDQNNFRKALHSVVS 523 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~-f~~~~~~~~~~~~ll~ 523 (1049)
+.-.++-|..++|.++-.-...+ ...+-++-+...++..+.++.+.++..|-..++.++.-. +.-+-.-..-+|.++.
T Consensus 221 d~dvqyycttaisnIaVd~~~Rk-~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~ 299 (550)
T KOG4224|consen 221 DLDVQYYCTTAISNIAVDRRARK-ILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVE 299 (550)
T ss_pred ChhHHHHHHHHhhhhhhhHHHHH-HHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHH
Confidence 55667888888888875422111 112223333344555566889999999999999886521 1111122334788999
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhc
Q 001585 524 GLRDPELPVRVDSVFALRSFVEAC 547 (1049)
Q Consensus 524 ~L~d~~~~V~~~Aa~AL~~~~~~~ 547 (1049)
.|+++..|.-.....|++++--+.
T Consensus 300 Llqs~~~plilasVaCIrnisihp 323 (550)
T KOG4224|consen 300 LLQSPMGPLILASVACIRNISIHP 323 (550)
T ss_pred HHhCcchhHHHHHHHHHhhccccc
Confidence 999998888888888998876554
No 249
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=24.37 E-value=96 Score=34.56 Aligned_cols=18 Identities=17% Similarity=0.010 Sum_probs=11.8
Q ss_pred hcCCCHHHHHHHHHHHHH
Q 001585 1010 TQTLEFQYQALANGVAQH 1027 (1049)
Q Consensus 1010 ~~~l~~~~~~~l~~~~~~ 1027 (1049)
..-||++.-..|+.+-..
T Consensus 187 ~rILT~eDF~kI~~lr~~ 204 (324)
T PF05285_consen 187 TRILTPEDFAKIRELRAK 204 (324)
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 346788877777766543
No 250
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=24.32 E-value=1.8e+02 Score=24.44 Aligned_cols=53 Identities=21% Similarity=0.262 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHHhhhcCCCchh--hHHHHHHHhhcccc-CCCCcchhHHHHHHHHHhhc
Q 001585 448 QKDGALLAIGALCDKLKQTEPYKS--ELERMLVQHVFPEF-SSPVGHLRAKAAWVAGQYAH 505 (1049)
Q Consensus 448 ~keaal~~lg~la~~l~~~~~~~~--~~~~~l~~~v~p~l-~~~~~~lr~ra~~~l~~~~~ 505 (1049)
...++|.++|.++..-... ++.. ++.+ .++... +++..-+|+.|++++|-++.
T Consensus 3 ~lKaaLWaighIgss~~G~-~lL~~~~iv~----~iv~~a~~s~v~siRGT~fy~Lglis~ 58 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGI-QLLDESDIVE----DIVKIAENSPVLSIRGTCFYVLGLISS 58 (73)
T ss_pred HHHHHHHHHHhHhcChHHH-HHHhhcCHHH----HHHHHHHhCCccchHHHHHHHHHHHhC
Confidence 4678999999998642110 0000 1111 222222 36778899999999999876
No 251
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=24.13 E-value=3.3e+02 Score=27.07 Aligned_cols=100 Identities=14% Similarity=0.222 Sum_probs=57.5
Q ss_pred chhhHHHHHHHhcccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhCHHHHHHHHHhhCccHHHHHHHHH-H
Q 001585 761 PAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQ-M 839 (1049)
Q Consensus 761 ~a~~ll~~ii~~~~~~~~~~l~~il~~~l~~l~~~~~~~~~~~~l~v~~~~~~~~p~~~l~~L~~~~~~~~~~~~w~~-~ 839 (1049)
.|++++.+++..+...++ +..|+..+...|.. ...++.....++.++...+|..+.+-|++ +..-|+.-+. +
T Consensus 46 ~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D--~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~---l~~~l~~~L~~k 118 (169)
T PF08623_consen 46 AAYECLYTLLDTCLSRID--ISEFLDRVEAGLKD--EHDIKMLCHLMLSKLAQLAPEEVLQRLDS---LVEPLRKTLSKK 118 (169)
T ss_dssp HHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS---HHHHHHHHHHHHHHHHS-HHHHHHCCTT---THHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCC--cHHHHHHHHHHHHHHHHhCHHHHHHHHHH---HHHHHHHHhhcc
Confidence 467777777777776655 45566666556544 56677777788888888999999887763 2223332222 1
Q ss_pred HHHHHhhccccCcccchhhHHHHHHHHHHhc
Q 001585 840 LQQVKKNGLRVNFKREHDKKVCCLGLTSLLA 870 (1049)
Q Consensus 840 ~~~~~~~~~~~~~~~~~dkKl~~lal~~ll~ 870 (1049)
+. ...-.+.+.+..|.+.+++-++.-|.
T Consensus 119 ~k---~~AvkQE~Ek~~E~~rs~lr~~~~l~ 146 (169)
T PF08623_consen 119 LK---ENAVKQEIEKQQELIRSVLRAVKALN 146 (169)
T ss_dssp -----TTS-HHHHHHHHHHHHHHHHHHHHH-
T ss_pred CC---CCcccccHHHHHHHHHHHHHHHHHHH
Confidence 11 00001134455666677776666663
No 252
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=23.69 E-value=3.6e+02 Score=23.33 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=37.7
Q ss_pred cCChHHHHHHHHHHHHHHHhhCC---CCchhHHHHHHHHhhhh---hHHHHHHHHH
Q 001585 99 QVPPLLRVQLGECLKTIIHADYP---EQWPHLLDWVKHNLQDQ---QVYGALFVLR 148 (1049)
Q Consensus 99 ~~~~~ir~~l~~~i~~Ia~~d~P---~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~ 148 (1049)
.++..+|..+-.|+..|...-.. ..||.++..+-....++ -+..|..++.
T Consensus 29 ~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 29 NPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred cCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 35678999999999999886544 57999999998887755 2466666554
No 253
>KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.66 E-value=1.5e+03 Score=28.43 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhHhhhHhhhHHhhhhHhhcCcccc
Q 001585 685 SPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHF 729 (1049)
Q Consensus 685 ~~~isp~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~ 729 (1049)
.+.++..||.++...+.. -....+..+ ..|..|+..|.+.+
T Consensus 1335 gpkFseemWniaccaLad---AfsasLkhV-kdLlgcFhrgsede 1375 (1777)
T KOG1846|consen 1335 GPKFSEEMWNIACCALAD---AFSASLKHV-KDLLGCFHRGSEDE 1375 (1777)
T ss_pred CccccHHHHHHHHHHHHH---HHHhhhHHH-HHHHhHhhcCCccc
Confidence 477899999998754432 122234443 44556666666554
No 254
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=23.30 E-value=5.1e+02 Score=30.66 Aligned_cols=61 Identities=20% Similarity=0.178 Sum_probs=38.1
Q ss_pred hhccc-cCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHHHHhc
Q 001585 480 HVFPE-FSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRD-PELPVRVDSVFALRSFVEAC 547 (1049)
Q Consensus 480 ~v~p~-l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d-~~~~V~~~Aa~AL~~~~~~~ 547 (1049)
.++|. .++.+-=+|+.|...+|-.+ |+++. .+...+..|.+ .+.-||...|.||.-+|...
T Consensus 555 ~lLh~avsD~nDDVrRAAViAlGfvc---~~D~~----~lv~tvelLs~shN~hVR~g~AvaLGiacag~ 617 (926)
T COG5116 555 TLLHYAVSDGNDDVRRAAVIALGFVC---CDDRD----LLVGTVELLSESHNFHVRAGVAVALGIACAGT 617 (926)
T ss_pred hhheeecccCchHHHHHHHHheeeeE---ecCcc----hhhHHHHHhhhccchhhhhhhHHHhhhhhcCC
Confidence 34443 45556667777777777643 34533 34455556654 45668888888888888764
No 255
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.23 E-value=3.5e+02 Score=34.54 Aligned_cols=96 Identities=21% Similarity=0.267 Sum_probs=61.3
Q ss_pred chhhhHHHHHHHHHHHhhhc--CCCchhhHHHHHHHhhccccCC-CCcchhHHHHHHHHHh-hccc---cCChhHHHHHH
Q 001585 446 YRQKDGALLAIGALCDKLKQ--TEPYKSELERMLVQHVFPEFSS-PVGHLRAKAAWVAGQY-AHIN---FSDQNNFRKAL 518 (1049)
Q Consensus 446 w~~keaal~~lg~la~~l~~--~~~~~~~~~~~l~~~v~p~l~~-~~~~lr~ra~~~l~~~-~~~~---f~~~~~~~~~~ 518 (1049)
..+|--|-+.+..+..+..- ..-+..++. .+-+..+++ ++|+||-=+|.|+|++ .++. |. -......
T Consensus 571 ~EqrtmaAFVLAviv~nf~lGQ~acl~~~li----~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~--G~r~~Ah 644 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLGQKACLNGNLI----GICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWS--GRRDNAH 644 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHhccccHH----HHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhc--cccccHH
Confidence 35566666677776665321 111112222 234445666 4899999999999995 3321 11 1223445
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001585 519 HSVVSGLRDPELPVRVDSVFALRSFVEAC 547 (1049)
Q Consensus 519 ~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~ 547 (1049)
..+...|.|+.+-||.+|.-||..|+.+.
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 66677788888889999999999999974
No 256
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=23.22 E-value=4.2e+02 Score=28.65 Aligned_cols=146 Identities=14% Similarity=0.185 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCC------CCCchHHHHHHHHHHHH
Q 001585 471 SELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRD------PELPVRVDSVFALRSFV 544 (1049)
Q Consensus 471 ~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d------~~~~V~~~Aa~AL~~~~ 544 (1049)
..+.-+|...+-..+.....-+|.+|+-++ ++..-+.+++|..++++.+ .++.+-..-..-...++
T Consensus 193 KELq~YF~kvisal~dEs~~~~r~aAl~sL--------r~dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL 264 (450)
T COG5095 193 KELQMYFDKVISALLDESDEQTRDAALESL--------RNDSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLL 264 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------ccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q ss_pred HhcccccccccchHHHHHHHHHHh------hhhch-------hhHHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHh
Q 001585 545 EACRDLNEIRPILPQLLDEFFKLM------NEVEN-------EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMN 611 (1049)
Q Consensus 545 ~~~~~~~~l~p~l~~il~~L~~ll------~~~~~-------~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~ 611 (1049)
.+. .-.+-||+.++|..++.++ +..++ +....++.-+..+|+..-....+.++..+..+|+..-+
T Consensus 265 ~N~--~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k 342 (450)
T COG5095 265 KNK--YIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREK 342 (450)
T ss_pred cCC--ceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhccc
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHH
Q 001585 612 TAEADEDADDPGALAAVGCLRAISTI 637 (1049)
Q Consensus 612 ~~~~d~~~~~~~~~~~~~~le~i~~l 637 (1049)
....-- |++.+++.+
T Consensus 343 ~~sT~Y-----------Galkgls~l 357 (450)
T COG5095 343 TESTQY-----------GALKGLSIL 357 (450)
T ss_pred ccchhh-----------hhhhhhhhh
No 257
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=22.86 E-value=46 Score=21.64 Aligned_cols=14 Identities=36% Similarity=0.408 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHhhc
Q 001585 492 LRAKAAWVAGQYAH 505 (1049)
Q Consensus 492 lr~ra~~~l~~~~~ 505 (1049)
+|..|.|.+|++.+
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 57888888887653
No 258
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=22.57 E-value=1.2e+03 Score=26.67 Aligned_cols=168 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHhhhhchh-
Q 001585 497 AWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEVENE- 574 (1049)
Q Consensus 497 ~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~-~~~~l~p~l~~il~~L~~ll~~~~~~- 574 (1049)
+..+.++.+.+ ....+...++.+...+-+++..||.+|-+.++-++.+.. ......-+++-++-.-+..-+..+.|
T Consensus 8 v~l~~~~p~l~--~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER 85 (371)
T PF14664_consen 8 VDLLKRHPTLK--YDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVER 85 (371)
T ss_pred HHHHHhCchhh--hhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHH
Q ss_pred -hHHHHHHHHHHH--ccCcccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHH
Q 001585 575 -DLVFTLETIVDK--FGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQI 651 (1049)
Q Consensus 575 -~l~~~l~~iv~~--~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~~~~~~~~l 651 (1049)
.....+.++++. ..+++.. .++..++. +.+..+|+ ++..+++|+..+.-. +|+....-
T Consensus 86 ~QALkliR~~l~~~~~~~~~~~---~vvralva-----iae~~~D~--------lr~~cletL~El~l~---~P~lv~~~ 146 (371)
T PF14664_consen 86 EQALKLIRAFLEIKKGPKEIPR---GVVRALVA-----IAEHEDDR--------LRRICLETLCELALL---NPELVAEC 146 (371)
T ss_pred HHHHHHHHHHHHhcCCcccCCH---HHHHHHHH-----HHhCCchH--------HHHHHHHHHHHHHhh---CHHHHHHc
Q ss_pred HhhHHHHHHHHcccchhhHHHHHHHHHHHHhhcCCC
Q 001585 652 EPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPT 687 (1049)
Q Consensus 652 ~~~~~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~ 687 (1049)
.+. .++...+........+.++..+-.++.....
T Consensus 147 gG~--~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~t 180 (371)
T PF14664_consen 147 GGI--RVLLRALIDGSFSISESLLDTLLYLLDSPRT 180 (371)
T ss_pred CCH--HHHHHHHHhccHhHHHHHHHHHHHHhCCcch
No 259
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=22.41 E-value=1e+03 Score=26.65 Aligned_cols=141 Identities=13% Similarity=0.166 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh---HHHHHHHHHHHccCc
Q 001585 514 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEE 590 (1049)
Q Consensus 514 ~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~~~ 590 (1049)
++.+|.-+...+.+.+...|..|...|+ .+. .-..+.||+-..+..-...--..+... ++.++.+++.+=.=.
T Consensus 176 lq~yf~~It~a~~~~~~~~r~~aL~sL~---tD~-gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~ 251 (343)
T cd08050 176 LQLYFEEITEALVGSNEEKRREALQSLR---TDP-GLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLH 251 (343)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhc---cCC-CchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 4666666666665555555555444433 332 223344444333332222111001122 233333344433345
Q ss_pred ccccHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcc
Q 001585 591 MAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLT 664 (1049)
Q Consensus 591 i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~le~i~~ll~~~~~~~~~~~~l~~~~~p~i~~~l~ 664 (1049)
+.||.-+++..+..++..- .-...+. .++....+...-++++.|++..+.. +..+.++++-.+..+|.
T Consensus 252 le~Ylh~Lip~vltclv~~--~l~~~~~-~~~h~~LRd~AA~ll~~i~~~f~~~---y~~l~~ri~~tl~k~l~ 319 (343)
T cd08050 252 LEPYLHQLIPSVLTCLVAK--QLCSRPP-DDNHWALRDYAARLLAQICRKFSTS---YNTLQPRITRTLLKALL 319 (343)
T ss_pred hHHhHHHHHHHHHHHhhhH--hhcCCCC-CchHHHHHHHHHHHHHHHHHHcCCC---CCcHHHHHHHHHHHHHc
Confidence 7789888887766554321 1111110 2234555666677888888777532 33456666655555553
No 260
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.35 E-value=1.3e+03 Score=27.08 Aligned_cols=91 Identities=18% Similarity=0.247 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh-H---HHHHHHHHHH-
Q 001585 512 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED-L---VFTLETIVDK- 586 (1049)
Q Consensus 512 ~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~-l---~~~l~~iv~~- 586 (1049)
..+..++..+.+...|++-.+|-.||..|.+..... ++..+.|.+.++..+..-+-+..+++ . +.+|..+.+.
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~--P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGA--PDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccC--cHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 467888888888888998899999999999999884 67777777777777766554433332 3 3344444443
Q ss_pred ccCcccccHHHHHHHHHH
Q 001585 587 FGEEMAPYALGLCQNLAA 604 (1049)
Q Consensus 587 ~~~~i~p~~~~l~~~L~~ 604 (1049)
-...+.+|..++.-++.+
T Consensus 332 ~~~~l~~~~l~ialrlR~ 349 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRT 349 (533)
T ss_pred hhcchhhhchhHHHHHHH
Confidence 356788888888877763
No 261
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=22.23 E-value=2.5e+02 Score=31.98 Aligned_cols=88 Identities=16% Similarity=0.164 Sum_probs=51.1
Q ss_pred hhccccCCCCcchhHHHHHHHHHhhccccCC-hhHHHHHHHHHHhcC-----CCCCCchHHHHHHHHHHHHHhccccccc
Q 001585 480 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSD-QNNFRKALHSVVSGL-----RDPELPVRVDSVFALRSFVEACRDLNEI 553 (1049)
Q Consensus 480 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~-~~~~~~~~~~ll~~L-----~d~~~~V~~~Aa~AL~~~~~~~~~~~~l 553 (1049)
++...+.|...-+.-.+..++|.|+.-.-.- +-.-..+++-++.+| -|.++.++-++++||+++.--...+..+
T Consensus 319 ~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~ 398 (604)
T KOG4500|consen 319 FLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHF 398 (604)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhc
Confidence 3444566666666777888899997621000 001133445555554 3567788889999999987544345566
Q ss_pred ccchHHHHHHHHHHhh
Q 001585 554 RPILPQLLDEFFKLMN 569 (1049)
Q Consensus 554 ~p~l~~il~~L~~ll~ 569 (1049)
.|- .+.+.++..+.
T Consensus 399 ~~a--GvteaIL~~lk 412 (604)
T KOG4500|consen 399 APA--GVTEAILLQLK 412 (604)
T ss_pred ccc--chHHHHHHHHH
Confidence 553 34444544443
No 262
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=21.90 E-value=83 Score=23.08 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.4
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHH
Q 001585 515 RKALHSVVSGLRDPELPVRVDSVFA 539 (1049)
Q Consensus 515 ~~~~~~ll~~L~d~~~~V~~~Aa~A 539 (1049)
..+...+...|.|+++.||.+|...
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 5788889999999999999988764
No 263
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=21.55 E-value=1.1e+03 Score=26.11 Aligned_cols=96 Identities=11% Similarity=0.092 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHhhccccCCh---hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHh
Q 001585 492 LRAKAAWVAGQYAHINFSDQ---NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLM 568 (1049)
Q Consensus 492 lr~ra~~~l~~~~~~~f~~~---~~~~~~~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~~~~~~~l~p~l~~il~~L~~ll 568 (1049)
+-..|+.++..+-+.. ... +.+.-..++++..+.....-||-.-..-++.++-. ....+.|.+++++-.++.-+
T Consensus 71 VH~KaLevY~~IF~~i-g~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lp--L~~~L~p~l~~li~slLpGL 147 (307)
T PF04118_consen 71 VHQKALEVYEYIFERI-GPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLP--LGPALRPCLKGLILSLLPGL 147 (307)
T ss_pred HHHHHHHHHHHHHHhc-CHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC--ccHHHHHHHHHHHHHhcccc
Confidence 4455666666543211 111 23455667888888776677777666666666653 34589999999999999999
Q ss_pred hhhchh---hHHHHHHHHHHHccCc
Q 001585 569 NEVENE---DLVFTLETIVDKFGEE 590 (1049)
Q Consensus 569 ~~~~~~---~l~~~l~~iv~~~~~~ 590 (1049)
.+-++| ....+++.+...+++.
T Consensus 148 ede~sE~~~~~~~ll~~l~~~v~~~ 172 (307)
T PF04118_consen 148 EDEGSEFFDRTLKLLDKLKEAVGDK 172 (307)
T ss_pred ccCCchHHHHHHHHHHHHHHhcChh
Confidence 864444 2455566666655554
No 264
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.50 E-value=68 Score=31.17 Aligned_cols=10 Identities=10% Similarity=0.295 Sum_probs=4.4
Q ss_pred hhhHHHHHHH
Q 001585 856 HDKKVCCLGL 865 (1049)
Q Consensus 856 ~dkKl~~lal 865 (1049)
.+|+.+.-+|
T Consensus 131 r~RRt~lR~m 140 (227)
T KOG3241|consen 131 RDRRTLLRAM 140 (227)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 265
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.27 E-value=1.4e+03 Score=26.92 Aligned_cols=99 Identities=17% Similarity=0.264 Sum_probs=72.6
Q ss_pred HHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCCh--hHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHHHHhccc
Q 001585 473 LERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGLRD-PELPVRVDSVFALRSFVEACRD 549 (1049)
Q Consensus 473 ~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~--~~~~~~~~~ll~~L~d-~~~~V~~~Aa~AL~~~~~~~~~ 549 (1049)
+.+++. ++..-..+|...+|+-||-.+|.-++.- .+. .+...++.+++..|-| .+..|..+|..+|....... .
T Consensus 256 L~s~~~-~la~ka~dp~a~~r~~a~r~L~~~as~~-P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~-~ 332 (533)
T KOG2032|consen 256 LGSVLL-SLANKATDPSAKSRGMACRGLGNTASGA-PDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA-S 332 (533)
T ss_pred HHHHHH-HHHHhccCchhHHHHHHHHHHHHHhccC-cHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh-h
Confidence 444432 3344456788899999999999987631 111 4567788888888765 46789999999999999876 4
Q ss_pred ccccccchHHHHHHHHHHhhhhchh
Q 001585 550 LNEIRPILPQLLDEFFKLMNEVENE 574 (1049)
Q Consensus 550 ~~~l~p~l~~il~~L~~ll~~~~~~ 574 (1049)
...+.+|+-++--.+-.+....+.+
T Consensus 333 ~~~l~~~~l~ialrlR~l~~se~~~ 357 (533)
T KOG2032|consen 333 NDDLESYLLNIALRLRTLFDSEDDK 357 (533)
T ss_pred hcchhhhchhHHHHHHHHHHhcChh
Confidence 6788899999888888887654433
No 266
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.08 E-value=1.6e+03 Score=27.53 Aligned_cols=94 Identities=22% Similarity=0.277 Sum_probs=65.4
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccc------cCCh-hHHHHH
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN------FSDQ-NNFRKA 517 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~------f~~~-~~~~~~ 517 (1049)
+.+.|-+|+.++-.++++++= ..-.-+.....+.+.+--+|..|..++.-|+... +.+. .....+
T Consensus 211 D~~Vrt~A~eglL~L~eg~kL--------~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~a 282 (823)
T KOG2259|consen 211 DFRVRTHAVEGLLALSEGFKL--------SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAA 282 (823)
T ss_pred CcchHHHHHHHHHhhcccccc--------cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHH
Confidence 678888899888888886431 1112223333456777788888866666655422 1111 456778
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 001585 518 LHSVVSGLRDPELPVRVDSVFALRSFVEA 546 (1049)
Q Consensus 518 ~~~ll~~L~d~~~~V~~~Aa~AL~~~~~~ 546 (1049)
+..+...+.|-+..||+.|+.+|..|-..
T Consensus 283 F~~vC~~v~D~sl~VRV~AaK~lG~~~~v 311 (823)
T KOG2259|consen 283 FSSVCRAVRDRSLSVRVEAAKALGEFEQV 311 (823)
T ss_pred HHHHHHHHhcCceeeeehHHHHhchHHHh
Confidence 88999999999999999999999987655
No 267
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.96 E-value=1.3e+02 Score=31.78 Aligned_cols=60 Identities=28% Similarity=0.445 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCC
Q 001585 897 EQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDE 976 (1049)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 976 (1049)
..+.+...+.+..|.+....|.++++|+|+...++++++..+|.+ ++++++|++.++++
T Consensus 15 ~~LL~~E~e~de~~~~~~~~f~Eee~D~ef~~~~~eed~~~~Dsd---------------------f~~se~de~~~~~e 73 (240)
T PF05764_consen 15 KKLLEEELEEDEFFWNQYGLFQEEEDDEEFESEEEEEDEEEDDSD---------------------FDDSEDDEDESDDE 73 (240)
T ss_pred HHHHHHHHhhhhhhhhhcccccccCCCccccCCCccccccccccc---------------------cCccccCCCCCccc
Q ss_pred C
Q 001585 977 E 977 (1049)
Q Consensus 977 ~ 977 (1049)
.
T Consensus 74 ~ 74 (240)
T PF05764_consen 74 E 74 (240)
T ss_pred c
No 268
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.66 E-value=3.1e+02 Score=30.00 Aligned_cols=106 Identities=13% Similarity=0.079 Sum_probs=62.9
Q ss_pred HhhhHHhhhhHhhcCcccccccCCcc---hHHHHHHHHHHHhcCCCCCCcccCchhhHHHHHHHhccc---Cc--hhchH
Q 001585 711 FPNILVPLDNYISRGTAHFLTCKEPD---YQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG---QV--DHWVE 782 (1049)
Q Consensus 711 l~~~~~~L~~~i~~~~~~~l~~~~~~---~~~~i~~i~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~---~~--~~~l~ 782 (1049)
-..++++|+-.+..-|+.|+.|..|+ .++.|.+++.++++-.+ ++ +.+..-++...+. .+ .|.+.
T Consensus 241 svsL~RvLEm~it~~Peifld~trpns~~Ll~ri~qllnqvlsrVt--~e-----~~lf~rvv~~~~~~le~V~hypil~ 313 (489)
T KOG4692|consen 241 SVSLARVLEMCITAMPEIFLDGTRPNSRRLLERILQLLNQVLSRVT--DE-----FFLFVRVVRRQGQPLEKVSHYPILA 313 (489)
T ss_pred HHHHHHHHHHHHHhhhHHHhcCCCCcHHHHHHHHHHHHHHHHHhhc--cc-----cchhHHHHHhhcCChhhhcccchHH
Confidence 33556777777888888888876664 45666777777765332 21 1133333333322 23 36667
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhCHHHHHHHH
Q 001585 783 PYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSIL 823 (1049)
Q Consensus 783 ~il~~~l~~l~~~~~~~~~~~~l~v~~~~~~~~p~~~l~~L 823 (1049)
..+..++..|...+.+..+........++...+|+..+--+
T Consensus 314 a~~GIll~Ll~~~~~S~~r~Q~~~~~~~a~l~dP~fq~~~~ 354 (489)
T KOG4692|consen 314 ALVGILLNLLEASEDSKPRQQHDVIGLFASLDDPDFQYYGF 354 (489)
T ss_pred HHHHHHHHHHHhCcccCcccchhhhhhheeccCcchHHHHH
Confidence 77777777777655555555555555566667888655433
No 269
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=20.65 E-value=1.4e+02 Score=36.79 Aligned_cols=93 Identities=17% Similarity=0.163 Sum_probs=53.3
Q ss_pred CchhhhHHHHHHHHHHHhhhcCC-----------CchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhH
Q 001585 445 PYRQKDGALLAIGALCDKLKQTE-----------PYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN 513 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~-----------~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~ 513 (1049)
+...+.+|+.++|++........ .....+.+++...+-........--+--++..||....
T Consensus 448 ~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-------- 519 (618)
T PF01347_consen 448 SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-------- 519 (618)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---------
T ss_pred ChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--------
Confidence 45788999999999998865431 11222333333333222222233444555666666532
Q ss_pred HHHHHHHHHhcCCCC---CCchHHHHHHHHHHHHHh
Q 001585 514 FRKALHSVVSGLRDP---ELPVRVDSVFALRSFVEA 546 (1049)
Q Consensus 514 ~~~~~~~ll~~L~d~---~~~V~~~Aa~AL~~~~~~ 546 (1049)
..+++.+...+.+. ...+|..|+.||.++...
T Consensus 520 -~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~ 554 (618)
T PF01347_consen 520 -PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH 554 (618)
T ss_dssp -GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT
T ss_pred -chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc
Confidence 23566677777654 456999999999987544
No 270
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=20.14 E-value=4.9e+02 Score=30.98 Aligned_cols=88 Identities=16% Similarity=0.234 Sum_probs=51.7
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCchhhHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhc
Q 001585 445 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 524 (1049)
Q Consensus 445 ~w~~keaal~~lg~la~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~ 524 (1049)
+-+.|.-++.++..+++...+.. ..+-+-+...+...+-+-.+.+|.-|..++++|-+..-..++.... .+...
T Consensus 104 dk~VR~r~lqila~~~d~v~eID---e~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n---~l~~~ 177 (885)
T COG5218 104 DKKVRKRSLQILALLSDVVREID---EVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVN---LLKDI 177 (885)
T ss_pred chhHHHHHHHHHHHHHHhcchHH---HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHH---HHHHH
Confidence 45677778888888887664421 1222223233333344678999999999999998765322222233 33333
Q ss_pred CC-CCCCchHHHHHH
Q 001585 525 LR-DPELPVRVDSVF 538 (1049)
Q Consensus 525 L~-d~~~~V~~~Aa~ 538 (1049)
++ ||+--||..|..
T Consensus 178 vqnDPS~EVRr~all 192 (885)
T COG5218 178 VQNDPSDEVRRLALL 192 (885)
T ss_pred HhcCcHHHHHHHHHH
Confidence 33 666667765543
No 271
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.02 E-value=2.5e+03 Score=29.51 Aligned_cols=100 Identities=13% Similarity=0.079 Sum_probs=61.5
Q ss_pred hHHHHHHHhhccccCCCCcchhHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHHHhcccc
Q 001585 472 ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPE-LPVRVDSVFALRSFVEACRDL 550 (1049)
Q Consensus 472 ~~~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ll~~L~d~~-~~V~~~Aa~AL~~~~~~~~~~ 550 (1049)
.+..+-...+...+..+.|.+|.++...++|.+...- ++.....+.+..+.-+.+.. +.-|..=..|+..+..... .
T Consensus 872 ~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~-~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvg-s 949 (2067)
T KOG1822|consen 872 EVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVG-SAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVG-S 949 (2067)
T ss_pred HHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcc-C
Confidence 3444444556667778999999999999999986432 23345667777777777654 4445555556666555431 1
Q ss_pred cccccchHHHHHHHHHHhhhhch
Q 001585 551 NEIRPILPQLLDEFFKLMNEVEN 573 (1049)
Q Consensus 551 ~~l~p~l~~il~~L~~ll~~~~~ 573 (1049)
-.=..++..-+..++.+..+...
T Consensus 950 ~~s~qhl~t~v~illal~~Ds~~ 972 (2067)
T KOG1822|consen 950 IGSGQHLNTSVSILLALATDSTS 972 (2067)
T ss_pred CCCchhcccHHHHHHHHhhcCCC
Confidence 11123445555666666665544
Done!