Query 001587
Match_columns 1049
No_of_seqs 333 out of 3178
Neff 11.1
Searched_HMMs 29240
Date Tue Mar 26 15:49:24 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001587.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_887-890//hhsearch_pdb/001587hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 1.0 1 1 608.4 79.3 810 2-1047 12-851 (852)
2 2bpt_A Importin beta-1 subunit 1.0 1 1 524.9 77.9 782 3-896 4-858 (861)
3 1qgr_A Protein (importin beta 1.0 1 1 511.8 73.3 794 4-898 2-874 (876)
4 1u6g_C TIP120 protein, CAND1; 1.0 1 1 492.7 68.6 949 3-1021 6-1185(1230)
5 1wa5_C Importin alpha RE-expor 1.0 1 1 406.1 69.5 584 2-593 4-687 (960)
6 2x1g_F Cadmus; transport prote 1.0 1 1 396.4 54.0 587 3-597 7-744 (971)
7 1u6g_C TIP120 protein, CAND1; 1.0 1 1 393.0 70.9 958 36-1044 7-1155(1230)
8 2x19_B Importin-13; nuclear tr 1.0 1 1 391.9 63.1 530 2-536 23-652 (963)
9 1qgr_A Protein (importin beta 1.0 1 1 360.9 66.5 765 47-941 12-874 (876)
10 3m1i_C Exportin-1; heat repeat 1.0 1 1 360.3 68.5 765 2-938 15-929 (1049)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=608.36 Aligned_cols=810 Identities=18% Similarity=0.254 Sum_probs=652.1
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 58999999993199989999999999987369991999999992--1999669999999999742410048997889999
Q 001587 2 AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLR--TAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLV 79 (1049)
Q Consensus 2 ~~~l~~ll~~~~s~d~~~r~~a~~~L~~~~~~p~~~~~l~~il~--~~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i 79 (1049)
.+++.++|++++|||+++|++||++|++++++|++...+.+++. ++.++.+|++|+++||+.+.++|..++++.+..+
T Consensus 12 ~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~i 91 (852)
T 4fdd_A 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFI 91 (852)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 99999999987394989999999999998709988999999985668898679999999999989874477999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC-----C
Q ss_conf 99999998405988799999999999970207899973149999995018988899999999999466642124-----1
Q 001587 80 KQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF-----R 154 (1049)
Q Consensus 80 ~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~-----~ 154 (1049)
|+.+++.+. ++++.+|+.++.+++.|++.+.+ +.||++++.+.+.+.++++..|+.++.+++.+++..+..+ .
T Consensus 92 k~~ll~~l~-~~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~ 169 (852)
T 4fdd_A 92 KSECLNNIG-DSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLD 169 (852)
T ss_dssp HHHHHTTTT-CSSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSS
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHC
T ss_conf 999999874-99899999999999999986481-3568999999998709998999999999999999857875634313
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 01999999999840799996899999999987660158904699998446999999998850499889999999999985
Q 001587 155 PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELI 234 (1049)
Q Consensus 155 ~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~i~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~ 234 (1049)
..++.+++.+.+++.+ ++..||..|++++..++...+. .+...++.+++.+...+.+++++++..++++|..++
T Consensus 170 ~~~~~il~~l~~~l~~-~~~~vR~~A~~aL~~~~~~~~~-----~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~ 243 (852)
T 4fdd_A 170 RPLNIMIPKFLQFFKH-SSPKIRSHAVACVNQFIISRTQ-----ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLL 243 (852)
T ss_dssp SCHHHHHHHHTTTTTC-SSHHHHHHHHHHHHTTTTTTCH-----HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 3299999999998567-9789999999999999864638-----799889999999998717997789999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC-----------C
Q ss_conf 36883425549999999998630799994789999999999996218666515785879999964320-----------4
Q 001587 235 ESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLA-----------E 303 (1049)
Q Consensus 235 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~-----------~ 303 (1049)
+..+.++.+++..+++.++....+. ++.+|..++++|..+++.....-.-.+++..+++.++..|. +
T Consensus 244 ~~~~~~~~~~l~~l~~~l~~~~~~~--~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d 321 (852)
T 4fdd_A 244 EVRMDRLLPHMHNIVEYMLQRTQDQ--DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGD 321 (852)
T ss_dssp HHCHHHHGGGHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-
T ss_pred HHCHHHHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
T ss_conf 8577989988999999999870699--68999999999999860365798878889889999998757867679986698
Q ss_pred CCCCCCC----CCCCHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 7988878----788679999999999999725111077897788540499956786999999999411868889739999
Q 001587 304 SNEAGED----DDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESV 379 (1049)
Q Consensus 304 ~~~~~~d----~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~l~~i 379 (1049)
.++|+++ ++|++|.++..+++.++...++.+++.+++.+.+.+.+++|+.|++|+.++|.+++++++.+.++++.+
T Consensus 322 ~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~ 401 (852)
T 4fdd_A 322 VEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPEL 401 (852)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 44322245640111699999999999987461878999999999985599889999999999999863568899879999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 999985228999668999999999967442078-9855454799999841399968999999999999985212365645
Q 001587 380 LHIVLGALRDPEQFVRGAASFALGQFAEYLQPE-IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL 458 (1049)
Q Consensus 380 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~il~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~ 458 (1049)
++.++..++|+++.||.+++++++++++..++. ...++..+++.+++.+.+++++||..+++++..+++..+..+.||+
T Consensus 402 l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l 481 (852)
T 4fdd_A 402 IPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL 481 (852)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999871799889999999999999988611047899999999999998589888999999999999997367667679
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98999999950289975999999999999998410022--3289999999999821590345667789989999999531
Q 001587 459 DPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFI--PYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVG 536 (1049)
Q Consensus 459 ~~il~~l~~~l~~~~~~v~~~~~~~i~~l~~~~~~~~~--~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~i~~~~~ 536 (1049)
+.+++.+...++..+.+....++++++.++...+..+. +|++.++|.+.+.+..
T Consensus 482 ~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~------------------------ 537 (852)
T 4fdd_A 482 AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM------------------------ 537 (852)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH------------------------
T ss_conf 99999999999883747999999999999997424313678999988999999873------------------------
Q ss_pred HHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC
Q ss_conf 10026662999999984369999325688999999999971137467333356999861567988766889994011026
Q 001587 537 RARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENING 616 (1049)
Q Consensus 537 ~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 616 (1049)
+.++++.+
T Consensus 538 ------------------l~d~~~~~------------------------------------------------------ 545 (852)
T 4fdd_A 538 ------------------LKDEDKDL------------------------------------------------------ 545 (852)
T ss_dssp ------------------SCTTCTTH------------------------------------------------------
T ss_pred ------------------CCCCCHHH------------------------------------------------------
T ss_conf ------------------33046999------------------------------------------------------
Q ss_pred CCCCCCCCCHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 89988884011001466305551501129999999999999821201103999999997412079967999999999999
Q 001587 617 FGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNI 696 (1049)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l 696 (1049)
..++++++.++...+..+.||++.++..++..+... +
T Consensus 546 -----------------------------~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~--------------l 582 (852)
T 4fdd_A 546 -----------------------------FPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKT--------------L 582 (852)
T ss_dssp -----------------------------HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHH--------------H
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H
T ss_conf -----------------------------999999999999974867988999999999999999--------------9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999963128999078999999999999999600891989999999999999981986517989999999999997333
Q 001587 697 LTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREES 776 (1049)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~ 776 (1049)
..... ....++
T Consensus 583 ~~~~~---------------------------~~~~~~------------------------------------------ 593 (852)
T 4fdd_A 583 AQAML---------------------------NNAQPD------------------------------------------ 593 (852)
T ss_dssp HHHHH---------------------------HHHCTT------------------------------------------
T ss_pred HHHHH---------------------------HHCCCC------------------------------------------
T ss_conf 99987---------------------------533886------------------------------------------
Q ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 2118899998776566410199999987479999999299819989--99799999744269992230211172999886
Q 001587 777 TCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIF--AKLFDPLMKFAKSSRPLQDRTMVVATLAEVAR 854 (1049)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~ 854 (1049)
. . .+.+..++.++.++++.++..+|+.+.+|+ +.+++.++..+++.. ..+|..++.+++++++
T Consensus 594 ----~--~--------~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~-~~vr~~a~~~l~~l~~ 658 (852)
T 4fdd_A 594 ----Q--Y--------EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKM-PEVRQSSFALLGDLTK 658 (852)
T ss_dssp ----T--S--------CCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSS-HHHHHHHHHHHHHHHH
T ss_pred ----C--C--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHH
T ss_conf ----6--6--------88761199999999978999874769988367718999999838998-4499999999999999
Q ss_pred HCCCCHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 30985132076369999984289995767789999999886158221467999998664311799987247745999999
Q 001587 855 DMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVA 934 (1049)
Q Consensus 855 ~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~a~~~l~ 934 (1049)
.++....+|++.++|.+.+.+.+.++++|.+|++++|.++.+.++.+.||+..+++.|.++++.++....+++|++.++|
T Consensus 659 ~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~ig 738 (852)
T 4fdd_A 659 ACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIG 738 (852)
T ss_dssp HCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 81688898799999999987694206899999999999999711767878999999999985799887207788999999
Q ss_pred HHHHHCCCCC-C-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 9997489999-9-5428999982189988488429999999998820781220005699999999726999985799999
Q 001587 935 RMIMVNPQSI-P-LNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQILSLVPELVNLFAEVVVSPEESSEVKSQV 1012 (1049)
Q Consensus 935 ~l~~~~~~~~-~-~~~~l~~~~~~lp~~~d~~~~~~~~~~l~~l~~~~~~~v~~~~~~il~~~~~~l~~~~~~~~~~~~~ 1012 (1049)
+++..+|+.+ | ++++++.|+..||..+|.+|+..+++++|.++..+|+.+.+++..++..++.+- ..+++++..+
T Consensus 739 rl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~~~---~~~~~l~~~~ 815 (852)
T 4fdd_A 739 RLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWI---NPKDDLRDMF 815 (852)
T ss_dssp HHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHTCS---SCCHHHHHHH
T ss_pred HHHHHCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC---CCCHHHHHHH
T ss_conf 9998688976755899999999986536660799999999999998691868888999999987068---9978999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf 999999998736-50999984299999999986268
Q 001587 1013 GMAFSHLISLYG-QQMQPLLSNLSPAHATALAAFAP 1047 (1049)
Q Consensus 1013 ~~~l~~l~~~~~-~~~~~~~~~l~~~~~~~l~~~~~ 1047 (1049)
.+++..+++..| +.|+++++++||+.|++|++.+.
T Consensus 816 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 851 (852)
T 4fdd_A 816 CKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYG 851 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHC
T ss_conf 999999987677201999987299999999998709
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=524.85 Aligned_cols=782 Identities=18% Similarity=0.255 Sum_probs=618.4
Q ss_pred HHHHHHHHHH-CCCCHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHH-----------
Q ss_conf 8999999993-199989999999999987369--99199999999219-99669999999999742410-----------
Q 001587 3 QSLELLLIQF-LMPDNDARRQAEDQIKRLAKD--PQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGH----------- 67 (1049)
Q Consensus 3 ~~l~~ll~~~-~s~d~~~r~~a~~~L~~~~~~--p~~~~~l~~il~~~-~~~~~R~~a~~~l~~~i~~~----------- 67 (1049)
+++.++|+++ +|||++.|++|+++|++++++ |+++..|++++.++ .++.+|++|+++||+.+.++
T Consensus 4 ~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~ 83 (861)
T 2bpt_A 4 AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQR 83 (861)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 79999999742693979999999999999851999999999999837899867999999998702257574878999976
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHHHHH
Q ss_conf 048-997889999999999984059887999999999999702078999731499999950189-888999999999994
Q 001587 68 WAK-LSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE-QEEHREVALILFSSL 145 (1049)
Q Consensus 68 w~~-~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~l~~~-~~~~r~~al~~l~~l 145 (1049)
|.. ++++.+..+|+.+++.+.+ .++.+|+.++.+++.|++.++|.+.||++++.+.+.+.++ ++..|+.++.+++.+
T Consensus 84 ~~~~l~~~~~~~ik~~ll~~l~~-~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l 162 (861)
T 2bpt_A 84 WITQVSPEAKNQIKTNALTALVS-IEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYM 162 (861)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 76629999999999999998779-96379999999999999846764554999999999872689789999999999999
Q ss_pred HHHHHHC---CCCCHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 6664212---41019999999998407999--968999999999876601589046999984469999999988504998
Q 001587 146 TETIGQT---FRPHFADMQALLLKCLQDET--SNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEE 220 (1049)
Q Consensus 146 ~~~~~~~---~~~~~~~i~~~l~~~l~~~~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~i~~ll~~l~~~l~~~~~ 220 (1049)
++..+.. +.++.+.+++.+..++.+ + +..||..+++++..++.+........ ...+.+++.+...+.+.++
T Consensus 163 ~~~~~~~~~~~~~~~~~ll~~l~~~l~~-~~~~~~vr~~al~~l~~~~~~~~~~~~~~---~~~~~ll~~l~~~~~~~~~ 238 (861)
T 2bpt_A 163 CESADPQSQALVSSSNNILIAIVQGAQS-TETSKAVRLAALNALADSLIFIKNNMERE---GERNYLMQVVCEATQAEDI 238 (861)
T ss_dssp HHTSSTTSSTTGGGHHHHHHHHHHHHST-TCCCHHHHHHHHHHHHHHGGGCHHHHTSH---HHHHHHHHHHHHHHTCSCH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHCCCCH
T ss_conf 9727843567898899999999984157-99987899999999999999999870676---6899999999998659988
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH---------------
Q ss_conf 89999999999985368834255499-99999998630799994789999999999996218666---------------
Q 001587 221 DVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSL--------------- 284 (1049)
Q Consensus 221 ~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~--------------- 284 (1049)
+++..+++++..+++..+..+.+++. .+++.+.....+. ++.+|..++++|..+++......
T Consensus 239 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (861)
T 2bpt_A 239 EVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP--NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYN 316 (861)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 9999999999999999889999988999999999987377--27899999999999998788643332103577325699
Q ss_pred HHCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 51578587999996432047988878788679999999999999725111077897788540499956786999999999
Q 001587 285 KKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGII 364 (1049)
Q Consensus 285 ~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~l 364 (1049)
.-.+++..+++.++..+.+.+++++|++|++|..+..+++.++..+++.+++.+++.+.+.+.+.+|+.|++++.+++.+
T Consensus 317 ~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i 396 (861)
T 2bpt_A 317 FALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSI 396 (861)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99999988999999998706653012468689999999999998740868999999999875799726999999999999
Q ss_pred HHCCH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHH--HHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 41186-88897399999999852289996689999999999674420789--8554547999998413999689999999
Q 001587 365 SEGCA-EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI--VSHYESVLPCILNALEDESDEVKEKSYY 441 (1049)
Q Consensus 365 ~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~il~~l~~~l~~~~~~v~~~a~~ 441 (1049)
++++. +.+.++++.+++.+...+.|+++.||.++++++++++..+++.+ ..+++.+++.++..+.++ ++|+..+++
T Consensus 397 ~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~ 475 (861)
T 2bpt_A 397 MDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSW 475 (861)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_conf 8599878889989999999998828995999999999999999873540487888999999999976447-289999999
Q ss_pred HHHHHHHHHC----CCCCCCHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--
Q ss_conf 9999998521----2365645989999999502899--7599999999999999841002232899999999998215--
Q 001587 442 ALAAFCEDMG----EEILPFLDPLMGKLLAALENSP--RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLT-- 513 (1049)
Q Consensus 442 al~~l~~~~~----~~~~~~~~~il~~l~~~l~~~~--~~v~~~~~~~i~~l~~~~~~~~~~~~~~i~~~l~~~l~~~-- 513 (1049)
++..+++.++ ..+.||++.+++.+...+.+.+ ..+|..++.+++.++...+..+.+|+..++|.+...+...
T Consensus 476 al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 555 (861)
T 2bpt_A 476 TIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMS 555 (861)
T ss_dssp HHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999986231354246899999999999998575861589999999999999976265699999999999999998875
Q ss_pred ------C----HHHHHHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf ------9----0345667789989999999531100266629999999843699993-2568899999999997113746
Q 001587 514 ------N----DEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFS-ELREYTHGFFSNIAGVLEDGFA 582 (1049)
Q Consensus 514 ------~----~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~~~~-~~r~~~~~~l~~l~~~~~~~~~ 582 (1049)
+ ++...++..++.+++.++..+|. .+.|+.+.+++.++..++..++ .+|+.++.+++.++...+..+.
T Consensus 556 ~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~ 634 (861)
T 2bpt_A 556 VDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS-SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFE 634 (861)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG-GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3201388556777999999999999999998556-347899999999999974678875799999999999999766099
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 73333569998615679887668899940110268998888401100146630555150112999999999999982120
Q 001587 583 QYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSS 662 (1049)
Q Consensus 583 ~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~~~ 662 (1049)
+|++.++|.++..++... .+.+..++.+++.++...+..
T Consensus 635 ~~l~~i~~~l~~~l~~~~-----------------------------------------~~vr~~a~~~l~~l~~~~~~~ 673 (861)
T 2bpt_A 635 KYLETFSPYLLKALNQVD-----------------------------------------SPVSITAVGFIADISNSLEED 673 (861)
T ss_dssp HHHHHHHHHHHHHHHCTT-----------------------------------------SHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHCCCC-----------------------------------------HHHHHHHHHHHHHHHHHHCHH
T ss_conf 999999999998865566-----------------------------------------789999999999999874540
Q ss_pred CHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 1103999999997412079--96799999999999999999963128999078999999999999999600891989999
Q 001587 663 YAPFLEESLKILVRHASYF--HEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQ 740 (1049)
Q Consensus 663 ~~p~~~~~~~~l~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 740 (1049)
+.||++.+++.+...+.+. +.++|..+..+++.++..++ ..+.++++.+++.+...+....+.
T Consensus 674 ~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~----------~~~~~~l~~~l~~l~~~~~~~~~~----- 738 (861)
T 2bpt_A 674 FRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG----------ADFIPYLNDIMALCVAAQNTKPEN----- 738 (861)
T ss_dssp GHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG----------GGGHHHHHHHHHHHHHHHTCCCSS-----
T ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHCCCCC-----
T ss_conf 31119999999999727865567665999999999999840----------508999999999999997367899-----
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC---CC
Q ss_conf 999999999981986517989999999999997333211889999877656641019999998747999999929---98
Q 001587 741 ACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMG---PH 817 (1049)
Q Consensus 741 ~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~---~~ 817 (1049)
+ +++..+....+..++.++++.++..+| ..
T Consensus 739 ------------------------------------------~-----d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~ 771 (861)
T 2bpt_A 739 ------------------------------------------G-----TLEALDYQIKVLEAVLDAYVGIVAGLHDKPEA 771 (861)
T ss_dssp ------------------------------------------S-----SHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred ------------------------------------------C-----CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf ------------------------------------------9-----75889999999999999999999998267788
Q ss_pred HHHHHHHHHHHHHHHHCCCC---CCCCCHHHHHHHHHHHHHC-CCCHHHCHH-HHHHHHHHHCC---CCCHHHHHHHHHH
Q ss_conf 19989997999997442699---9223021117299988630-985132076-36999998428---9995767789999
Q 001587 818 FAPIFAKLFDPLMKFAKSSR---PLQDRTMVVATLAEVARDM-GSPIAAYVD-RVMPLVLKELA---SPDAMNRRNAAFC 889 (1049)
Q Consensus 818 ~~~~~~~l~~~l~~~l~~~~---~~~~r~~a~~~l~~l~~~~-~~~~~~~~~-~i~~~ll~~l~---~~~~~vr~~a~~~ 889 (1049)
+.+|++.+++.+.+.+.+.+ +..+|..|+.+++.++..+ |..+.+|++ .+++.+++.+. +.+..++.+|.|+
T Consensus 772 ~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa 851 (861)
T 2bpt_A 772 LFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWA 851 (861)
T ss_dssp HGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99999999999999874855578699999999999999988288248898726799999998853557887789999999
Q ss_pred HHHHHHH
Q ss_conf 9998861
Q 001587 890 VGELCKN 896 (1049)
Q Consensus 890 lg~l~~~ 896 (1049)
++.+.+.
T Consensus 852 ~~~~~~~ 858 (861)
T 2bpt_A 852 REQQKRQ 858 (861)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999987
No 3
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=511.77 Aligned_cols=794 Identities=16% Similarity=0.225 Sum_probs=613.4
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHCC-CCHHHHHHHHHHHHHHH-----------HHHCC
Q ss_conf 999999993199989999999999987369--99199999999219-99669999999999742-----------41004
Q 001587 4 SLELLLIQFLMPDNDARRQAEDQIKRLAKD--PQVVPALVQHLRTA-KTPNVRQLAAVLLRKKI-----------TGHWA 69 (1049)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~a~~~L~~~~~~--p~~~~~l~~il~~~-~~~~~R~~a~~~l~~~i-----------~~~w~ 69 (1049)
++.++|.+++|+|+++|++|+..|+++..+ |+++..|++++.++ .++.+|++|+++||+.+ .++|.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~ 81 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 68999997629898999999999999871680469999999985789987999999999987605543476789986440
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC--CHHHHHHHHHHHHHHHH
Q ss_conf 8997889999999999984059887999999999999702078999731499999950189--88899999999999466
Q 001587 70 KLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE--QEEHREVALILFSSLTE 147 (1049)
Q Consensus 70 ~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~l~~~--~~~~r~~al~~l~~l~~ 147 (1049)
.++++.+..+|+.+++.+.+ .+..+ +.++.+++.+++.+++.+.|++++|.+.+.+.++ ++..|..++.+++.+++
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~-~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (876)
T 1qgr_A 82 AIDANARREVKNYVLHTLGT-ETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (876)
T ss_dssp TSCHHHHHHHHHHHHHHTTT-CCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCC-CCHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 69999999999999998679-94788-99999999999846762256889999999870889879999999999999987
Q ss_pred HH-HHCCCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 64-21241019999999998407999-96899999999987660158904699998446999999998850499889999
Q 001587 148 TI-GQTFRPHFADMQALLLKCLQDET-SNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVI 225 (1049)
Q Consensus 148 ~~-~~~~~~~~~~i~~~l~~~l~~~~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~i~~ll~~l~~~l~~~~~~~~~~ 225 (1049)
.. ++.+..+.+.+++.+..++.++. +..+|..+++++..++.+.+......... ..+++.+...+.+.+.+++..
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~---~~il~~l~~~~~~~~~~vr~~ 236 (876)
T 1qgr_A 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER---HFIMQVVCEATQCPDTRVRVA 236 (876)
T ss_dssp HSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHH---HHHHHHHHHHTTCSSHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCCCCHHHHHH
T ss_conf 45876678679999999998616799988999999999999999999988717899---999999998717998899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH--------------HH-CC-
Q ss_conf 999999985368834255499-99999998630799994789999999999996218666--------------51-57-
Q 001587 226 AFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSL--------------KK-HK- 288 (1049)
Q Consensus 226 ~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~--------------~~-~~- 288 (1049)
+++++..++...+..+.+++. .+++.++....+. ++.+|..++++|..+++...... .. ..
T Consensus 237 a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (876)
T 1qgr_A 237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD--IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFY 314 (876)
T ss_dssp HHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf 99999999998699999887789999999996387--3499999999999998878767665100112477754201899
Q ss_pred ---CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf ---85879999964320479888787886799999999999997251110778977885404999567869999999994
Q 001587 289 ---LVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIIS 365 (1049)
Q Consensus 289 ---~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~al~~l~~l~ 365 (1049)
.+..+++.++..+.+.++|+++++|.+|.++..+++.++...++.+++.+++.+...+.+.+|+.|++++.+++.++
T Consensus 315 ~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~ 394 (876)
T 1qgr_A 315 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL 394 (876)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99989887079998753133444545217999999999999987758669999999998846998289999999999997
Q ss_pred HCCH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHH--HHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 1186-88897399999999852289996689999999999674420789--85545479999984139996899999999
Q 001587 366 EGCA-EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI--VSHYESVLPCILNALEDESDEVKEKSYYA 442 (1049)
Q Consensus 366 ~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~il~~l~~~l~~~~~~v~~~a~~a 442 (1049)
+++. +.+.++++.+++.++..++|+++.||..|+++++++++..++.. .++++.+++.++..+.++ ++|+..++++
T Consensus 395 ~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~a 473 (876)
T 1qgr_A 395 EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWA 473 (876)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_conf 488777899999999999999867997899999999999999857201144777999999999987588-8899999999
Q ss_pred HHHHHHHHC--------------CCCCCCHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 999998521--------------236564598999999950289---975999999999999998410022328999999
Q 001587 443 LAAFCEDMG--------------EEILPFLDPLMGKLLAALENS---PRNLQETCMSAIGSVAAAAEQAFIPYAERVLEL 505 (1049)
Q Consensus 443 l~~l~~~~~--------------~~~~~~~~~il~~l~~~l~~~---~~~v~~~~~~~i~~l~~~~~~~~~~~~~~i~~~ 505 (1049)
+..+++.++ ..+.||++.+++.+...+... +..+|..++++++.++...+..+.+|...+++.
T Consensus 474 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~ 553 (876)
T 1qgr_A 474 FSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLV 553 (876)
T ss_dssp HHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999985020123444455540321576999999999997276742046999999999999997743118999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHCCCCCC----CHHHHHHHHHHHHHHHHCC-CC
Q ss_conf 999982159034566778998999999953110026662999999984369999----3256889999999999711-37
Q 001587 506 LKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEF----SELREYTHGFFSNIAGVLE-DG 580 (1049)
Q Consensus 506 l~~~l~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~~~----~~~r~~~~~~l~~l~~~~~-~~ 580 (1049)
+...+... . ..... ...+++ ..++..++.+++.++..+| ..
T Consensus 554 l~~~l~~~------------------~-~~~~~---------------~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~ 599 (876)
T 1qgr_A 554 IMERLQQV------------------L-QMESH---------------IQSTSDRIQFNDLQSLLCATLQNVLRKVQHQD 599 (876)
T ss_dssp HHHHHHHH------------------H-TTTTS---------------CCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHH------------------H-HHHHC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_conf 99999999------------------9-88712---------------48863599999999999999999999828542
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 46733335699986156798876688999401102689988884011001466305551501129999999999999821
Q 001587 581 FAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTK 660 (1049)
Q Consensus 581 ~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~ 660 (1049)
+.||++.+++.++..++...+ + ...+..++.+++.++...+
T Consensus 600 ~~~~~~~l~~~l~~~l~~~~~-------------------------------~--------~~v~~~a~~~l~~l~~~~~ 640 (876)
T 1qgr_A 600 ALQISDVVMASLLRMFQSTAG-------------------------------S--------GGVQEDALMAVSTLVEVLG 640 (876)
T ss_dssp HHTTHHHHHHHHHHHC------------------------------------C--------CHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHCCC-------------------------------C--------CCCCHHHHHHHHHHHHHHH
T ss_conf 057899999999999985368-------------------------------8--------8850899999999999987
Q ss_pred HHCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH-CCHHHHH
Q ss_conf 201103999999997412079-96799999999999999999963128999078999999999999999600-8919899
Q 001587 661 SSYAPFLEESLKILVRHASYF-HEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTE-DDDKDVV 738 (1049)
Q Consensus 661 ~~~~p~~~~~~~~l~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~ 738 (1049)
..+.||++.+++.+...+.+. +.++|..++.+++.++...+ ..+.++++.+++.+.+.+.. +.+.+++
T Consensus 641 ~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~----------~~~~~~~~~i~~~l~~~l~~~~~~~~~~ 710 (876)
T 1qgr_A 641 GEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ----------SNIIPFCDEVMQLLLENLGNENVHRSVK 710 (876)
T ss_dssp GGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG----------GGGHHHHHHHHHHHHHHHTCTTSCGGGH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 609999999999999987586508799999999999999887----------8546459999999999748712338763
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC--
Q ss_conf 999999999999819865179899999999999973332118899998776566410199999987479999999299--
Q 001587 739 AQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGP-- 816 (1049)
Q Consensus 739 ~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-- 816 (1049)
..++.+++.+...+|.. +.++++.+++.+...+.... +. ++++..+....+...+.+.+..++...|.
T Consensus 711 ~~~~~~l~~i~~~~g~~-~~~~l~~~~~~l~~~~~~~~------~~---~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~ 780 (876)
T 1qgr_A 711 PQILSVFGDIALAIGGE-FKKYLEVVLNTLQQASQAQV------DK---SDYDMVDYLNELRESCLEAYTGIVQGLKGDQ 780 (876)
T ss_dssp HHHHHHHHHHHHHHGGG-GGGGHHHHHHHHHHHHTCCC------CT---TCHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHCCC------CC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999970352-79999999999999985558------99---9758899999999999999999999974575
Q ss_pred --------CHHHHHHHHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHHCCC-CHHHC-HHHHHHHHHH-HCCCCCHHHHH
Q ss_conf --------819989997999997442699-922302111729998863098-51320-7636999998-42899957677
Q 001587 817 --------HFAPIFAKLFDPLMKFAKSSR-PLQDRTMVVATLAEVARDMGS-PIAAY-VDRVMPLVLK-ELASPDAMNRR 884 (1049)
Q Consensus 817 --------~~~~~~~~l~~~l~~~l~~~~-~~~~r~~a~~~l~~l~~~~~~-~~~~~-~~~i~~~ll~-~l~~~~~~vr~ 884 (1049)
.+.+|++.+++.+.....+.. ...+|..|+.++|+++...|. ...+| .+.+++.++. ++.++++.+|+
T Consensus 781 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~ 860 (876)
T 1qgr_A 781 ENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKT 860 (876)
T ss_dssp SSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHCCCHHHHH
T ss_conf 55554388999999999999999865888888999999999999998828488999970489999999875468876899
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 89999999886158
Q 001587 885 NAAFCVGELCKNGG 898 (1049)
Q Consensus 885 ~a~~~lg~l~~~~~ 898 (1049)
+|+|++|.+.+..+
T Consensus 861 ~a~~a~~~~~~~~~ 874 (876)
T 1qgr_A 861 LARWATKELRKLKN 874 (876)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999997534
No 4
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=492.70 Aligned_cols=949 Identities=15% Similarity=0.166 Sum_probs=625.9
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC----------CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 89999999931999899999999999873699----------91999999992199966999999999974241004899
Q 001587 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKDP----------QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLS 72 (1049)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~a~~~L~~~~~~p----------~~~~~l~~il~~~~~~~~R~~a~~~l~~~i~~~w~~~~ 72 (1049)
.++.++|..+.|+|++.|++|++.|.+..+.+ ..+..+++.+. ++++.+|+.|+..+..... .++
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~----~~~ 80 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVS----KVK 80 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHT----TSC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHH----HCC
T ss_conf 69999997558987859999999999997416657875679999999999866-9998999999999999997----587
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC--------CCCCHHHHHHHHCC-CCCHHHHHHHHHHHH
Q ss_conf 788999999999998405988799999999999970207899--------97314999999501-898889999999999
Q 001587 73 PQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAG--------EWPDLLPFLFQFSQ-SEQEEHREVALILFS 143 (1049)
Q Consensus 73 ~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~--------~w~~ll~~l~~~l~-~~~~~~r~~al~~l~ 143 (1049)
++....+++.+++.+.+ .+..+|..++.+++.++....+.. .|++++|.+++.+. ++++..|..++.++.
T Consensus 81 ~~~~~~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 81 EYQVETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp HHHHHHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 98999999999998669-83889999999999999967974444411788999999999998757884679999999999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 94666421241019999999998407999968999999999876601589046999984469999999988504998899
Q 001587 144 SLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVA 223 (1049)
Q Consensus 144 ~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~i~~ll~~l~~~l~~~~~~~~ 223 (1049)
.+++..+..+.++.+.+++.+...+.+ ++..||..|+.+++.++...++.. +..+++.+++.+... .+...+
T Consensus 160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~-~~~~vR~~a~~al~~l~~~~~~~~----~~~~l~~l~~~L~~~---~~~~~r 231 (1230)
T 1u6g_C 160 DMLSRQGGLLVNFHPSILTCLLPQLTS-PRLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLSELSKN---DSMSTT 231 (1230)
T ss_dssp HHHHHTCSSCTTTHHHHHHHHGGGGGC-SSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHT---CSSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHCCC---CCHHHH
T ss_conf 999982767788799999999998759-968999999999999998568999----999999999986167---755689
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
Q ss_conf 99999999985368834255499999999986307999947899999999999962186665157858799999643204
Q 001587 224 VIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAE 303 (1049)
Q Consensus 224 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~ 303 (1049)
..+++++..++...+..+.++++.+++.++..+.+. ++.+|..+++++..+++..+..+. ++++.+++.++..+..
T Consensus 232 ~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~--~~~vR~~a~~~l~~l~~~~~~~~~--~~l~~li~~ll~~l~~ 307 (1230)
T 1u6g_C 232 RTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVD--DDELREYCIQAFESFVRRCPKEVY--PHVSTIINICLKYLTY 307 (1230)
T ss_dssp TTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSC--CTTTHHHHHHHHHHHHHCTTCCCH--HHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHCHHHHH--HHHHHHHHHHHHHHCC
T ss_conf 999999999999868989988999999999986689--778999999999999997848777--7689999999998278
Q ss_pred C--------------------CCCC----------CCCCCCHHHHHHHHHHHHHHHCCH---HCH---------------
Q ss_conf 7--------------------9888----------787886799999999999997251---110---------------
Q 001587 304 S--------------------NEAG----------EDDDLAPDRAAAEVIDTMALNLAK---HVF--------------- 335 (1049)
Q Consensus 304 ~--------------------~~~~----------~d~~~~~~~~a~~~l~~l~~~~~~---~~~--------------- 335 (1049)
. ++++ ++..|.+|..|..+++.++...++ ..+
T Consensus 308 d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~ 387 (1230)
T 1u6g_C 308 DPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE 387 (1230)
T ss_dssp C------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99888764411011223344653011001366645556779999999999999974666799999999899998717986
Q ss_pred ---------------------------------------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHH
Q ss_conf ---------------------------------------------77897788540499956786999999999411868
Q 001587 336 ---------------------------------------------PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAE 370 (1049)
Q Consensus 336 ---------------------------------------------~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~ 370 (1049)
+.+++.+.+.+++++|..|.+++.+++.+++.++.
T Consensus 388 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~ 467 (1230)
T 1u6g_C 388 ENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPG 467 (1230)
T ss_dssp SHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHH
T ss_conf 57999999999999997242434346752013564559999987469999999986137787999999999999997611
Q ss_pred HHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8897399999999852289996--68999999999967442078-98554547999998413999689999999999999
Q 001587 371 WMKEKLESVLHIVLGALRDPEQ--FVRGAASFALGQFAEYLQPE-IVSHYESVLPCILNALEDESDEVKEKSYYALAAFC 447 (1049)
Q Consensus 371 ~~~~~l~~i~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~-~~~~~~~il~~l~~~l~~~~~~v~~~a~~al~~l~ 447 (1049)
.+.++++.+++.+...+.|+++ .+|..++..++.+....++. +.++++.++|.++..+.+.+.+|+..++.++..++
T Consensus 468 ~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~ 547 (1230)
T 1u6g_C 468 ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLV 547 (1230)
T ss_dssp TTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 05777999999999997487885168999999999999838988788679999999999971424689999999999999
Q ss_pred HHHCC-------CCCCCHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC----
Q ss_conf 85212-------36564598999999950--289975999999999999998410022328999999999982159----
Q 001587 448 EDMGE-------EILPFLDPLMGKLLAAL--ENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTN---- 514 (1049)
Q Consensus 448 ~~~~~-------~~~~~~~~il~~l~~~l--~~~~~~v~~~~~~~i~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~---- 514 (1049)
+.++. .+.||++.+++.+...+ .+.+..+|..++.+++.++...|+.+.++++.+++.+...+....
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~ 627 (1230)
T 1u6g_C 548 KVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLT 627 (1230)
T ss_dssp HHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHH
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 87167555653232789999999999987326998899999999999999982703244388999999988445305999
Q ss_pred ---------------------------------HHHHHHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHCCCCCCCH
Q ss_conf ---------------------------------03456677899899999995311002666299999998436999932
Q 001587 515 ---------------------------------DEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSE 561 (1049)
Q Consensus 515 ---------------------------------~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 561 (1049)
+++..+|..+..+++.++...+.....+++.+++..+...++++++.
T Consensus 628 ~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~ 707 (1230)
T 1u6g_C 628 TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMH 707 (1230)
T ss_dssp HHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999999818564436888999999999999867888999999999999960433389899999999987635754187
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC--CCC-----------CCCC---CCCHHHHCC-CCCCCCCC
Q ss_conf 568899999999997113746733335699986156798--876-----------6889---994011026-89988884
Q 001587 562 LREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDD--GSA-----------VDID---GSDDENING-FGGVSSDD 624 (1049)
Q Consensus 562 ~r~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~--~~~-----------~~~~---~~~~~~~~~-~~~~~~~~ 624 (1049)
....++.+++.++...+..+.++.+.+++.++..+.... +.. .... ....+.+.. ...+...+
T Consensus 708 ~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~~~ 787 (1230)
T 1u6g_C 708 VSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQS 787 (1230)
T ss_dssp HHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC-
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCC
T ss_conf 89999999999988491267776776899999997586210578999999999998347887889999999850035788
Q ss_pred C--HHH-----------------CCC----CCCE--EEEC--CCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 0--110-----------------014----6630--5551--50112999999999999982120110399999999741
Q 001587 625 E--AHC-----------------ERS----VRNI--SVRT--GVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRH 677 (1049)
Q Consensus 625 ~--~~~-----------------~~~----~~~~--~i~~--~~~~~k~~a~~~l~~~~~~~~~~~~p~~~~~~~~l~~~ 677 (1049)
. .+. .+. +..+ .+++ .....+..++.+++.+.... .+.+ .+++.+.+.+.
T Consensus 788 ~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~--~~~~-~~~l~~~~~~~ 864 (1230)
T 1u6g_C 788 TALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHI--DLSG-QLELKSVILEA 864 (1230)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHS--CCCS-CTHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC--CCCC-CCCHHHHHHHH
T ss_conf 73200010489999999999846566689999999983788766799999999999861567--8765-64189999998
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 20799679999999999999999996312899907899999999999999960089198999999999999998198651
Q 001587 678 ASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAV 757 (1049)
Q Consensus 678 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~g~~~~ 757 (1049)
+.+.+++||.+|..+++.+... .+. .+++.+++.+..+ ++.+...+.++.+++...+...+
T Consensus 865 l~~~~~~Vr~aAa~aLg~l~~~-------------~~~----~~lp~ll~~l~~~--~~~~~~~l~al~e~i~~~~~~~~ 925 (1230)
T 1u6g_C 865 FSSPSEEVKSAASYALGSISVG-------------NLP----EYLPFVLQEITSQ--PKRQYLLLHSLKEIISSASVVGL 925 (1230)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHH-------------THH----HHHHHHHHHHHSC--GGGHHHHHHHHHHHHHSSCSTTT
T ss_pred HCCCCHHHHHHHHHHHHHHHCC-------------CHH----HHHHHHHHHHHCC--CHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 4799778999999996877526-------------999----8899999987266--03249889999999823876667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 79899999999999973332118899998776566410199999987479999999299819989997999997442699
Q 001587 758 EPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSR 837 (1049)
Q Consensus 758 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 837 (1049)
.++...+.+.+. .... +.++.+...+++|++.++...+ ..++|.+.+.+++.+
T Consensus 926 ~~~~~~i~~~L~----~~~~----------------~~~~~~r~~~a~~lg~l~~~~~-------~~l~p~l~~~l~~~~ 978 (1230)
T 1u6g_C 926 KPYVENIWALLL----KHCE----------------CAEEGTRNVVAECLGKLTLIDP-------ETLLPRLKGYLISGS 978 (1230)
T ss_dssp HHHHHHHHHHHT----TCCC----------------CSSTTHHHHHHHHHHHHHHSSG-------GGTHHHHTTTSSSSC
T ss_pred HHHHHHHHHHHH----HHHC----------------CCCHHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHCCCC
T ss_conf 766999999999----8733----------------8304468999988756650676-------888899999856997
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 92230211172999886309851320763699999842899957677899999998861582214679999986643117
Q 001587 838 PLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFG 917 (1049)
Q Consensus 838 ~~~~r~~a~~~l~~l~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~ 917 (1049)
+ .+|..++.++..++...+....++++.+++.+++.++|++..||++|+++++.++.+.|+.+.++++.+++.|.....
T Consensus 979 ~-~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~ 1057 (1230)
T 1u6g_C 979 S-YARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETK 1057 (1230)
T ss_dssp H-HHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTS
T ss_pred H-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 8-899999999999970682335898999899999864898587999999999999842857689779889899998830
Q ss_pred CCC----------------CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 999----------------8724774599999999974899999542899998218998848842999999999882078
Q 001587 918 DSE----------------PDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSN 981 (1049)
Q Consensus 918 ~~~----------------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~l~~~~~~lp~~~d~~~~~~~~~~l~~l~~~~~ 981 (1049)
.+. +.-.+|+||+.|+++++..+.+.+++.++++.|+..++. |.+.+..+|..+.+++..++
T Consensus 1058 ~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~~~~~~gl~d--~~di~~~~~~~l~~l~~~~~ 1135 (1230)
T 1u6g_C 1058 VRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKD--HYDIKMLTFLMLVRLSTLCP 1135 (1230)
T ss_dssp CCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHCCH
T ss_conf 2687601330589602367748999999999999999888747899999999804676--68899999999999984087
Q ss_pred HHHCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHHHHH
Q ss_conf 12200056999999997269999----------85799999999999998
Q 001587 982 PQILSLVPELVNLFAEVVVSPEE----------SSEVKSQVGMAFSHLIS 1021 (1049)
Q Consensus 982 ~~v~~~~~~il~~~~~~l~~~~~----------~~~~~~~~~~~l~~l~~ 1021 (1049)
+.+.+++++++..+..++..+.. ..|+.+.+++++..+..
T Consensus 1136 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~~l~~ 1185 (1230)
T 1u6g_C 1136 SAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLT 1185 (1230)
T ss_dssp HHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98999999999999999841146343652488999999999999999980
No 5
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=1.00 E-value=1 Score=406.09 Aligned_cols=584 Identities=11% Similarity=0.125 Sum_probs=450.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHCC------CCCHH
Q ss_conf 5899999999319998999999999998736999199999999219-9966999999999974241004------89978
Q 001587 2 AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWA------KLSPQ 74 (1049)
Q Consensus 2 ~~~l~~ll~~~~s~d~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~-~~~~~R~~a~~~l~~~i~~~w~------~~~~~ 74 (1049)
.+++.++|++++|||++.| ||++|++++++|+++..|++++.++ .+..+|++|+++||+.+.++|. .++++
T Consensus 4 ~~~l~~~L~~~~spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~ 81 (960)
T 1wa5_C 4 LETVAKFLAESVIASTAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPAN 81 (960)
T ss_dssp HHHHHHHHHHTTSGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHH
T ss_pred HHHHHHHHHHHCCCCHHHH--HHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf 9999999997659987899--99999985559988999999986579888899999999999998548876567889989
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC--
Q ss_conf 899999999999840598879999999999997020789997314999999501898889999999999946664212--
Q 001587 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT-- 152 (1049)
Q Consensus 75 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~-- 152 (1049)
.+..||+.+++.+.++ +..+|++++.+++.|++.++| +.||++++.+.+.+++++...+++++.++..+++.....
T Consensus 82 ~k~~ik~~ll~~l~~~-~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~ 159 (960)
T 1wa5_C 82 NVELIKKEIVPLMISL-PNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFR 159 (960)
T ss_dssp HHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCC
T ss_pred HHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999808-799999999999999986171-30157999999984789889999999999999999887614
Q ss_pred -----------CCCCHHHHHHHHH---HHHCCCCC--HHHH------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf -----------4101999999999---84079999--6899------999999987660158904699998446999999
Q 001587 153 -----------FRPHFADMQALLL---KCLQDETS--NRVR------IAALKAIGSFLEFTNDGAEVVKFREFIPSILNV 210 (1049)
Q Consensus 153 -----------~~~~~~~i~~~l~---~~l~~~~~--~~vr------~~a~~~l~~~~~~~~~~~~~~~~~~~i~~ll~~ 210 (1049)
+....+.+++++. .++.++.. ..++ ..+++++..+....-.......+..+.+.+++.
T Consensus 160 ~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 239 (960)
T 1wa5_C 160 SDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKY 239 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 84778999999999899999999999999873579879999999999999999999862565599999899999999999
Q ss_pred HHHHHH--CCC---------HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHH
Q ss_conf 998850--499---------88999999999998536883425549999999998630---7999947899999999999
Q 001587 211 SRQCLA--SGE---------EDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSS---SHNLEPNTRHQAIQIISWL 276 (1049)
Q Consensus 211 l~~~l~--~~~---------~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~r~~a~~~l~~l 276 (1049)
+..... ..+ ..+++.+++++..+.+..+..+.++++.+++.++..+. +...++.++..++++|.++
T Consensus 240 l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~ 319 (960)
T 1wa5_C 240 LSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAV 319 (960)
T ss_dssp HSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 76899855578553313279999999999999999998999999999999999999984377767289999999999999
Q ss_pred HHHHHH--HHHHCCCHHHHH-HHHHHHHCCCCC-------C---------CCCCCCCHHHHHHHHHHHHHHHCCHHCHHH
Q ss_conf 962186--665157858799-999643204798-------8---------878788679999999999999725111077
Q 001587 277 AKYKYN--SLKKHKLVIPIL-QVMCPLLAESNE-------A---------GEDDDLAPDRAAAEVIDTMALNLAKHVFPP 337 (1049)
Q Consensus 277 ~~~~~~--~~~~~~~~~~il-~~l~~~l~~~~~-------~---------~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ 337 (1049)
++.... .++..+++..++ ..+++.|.-..+ | ++++.+++|.+|..+++.++..+++.+++.
T Consensus 320 ~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~ 399 (960)
T 1wa5_C 320 TRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNI 399 (960)
T ss_dssp HTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 68676899876851899999999687348888789988449999998635755123718899999999999701327899
Q ss_pred HHHHHHHHHC------CCCHHHHHHHHHHHHHHHHC---CHHHHHH-----HHHHH-HHHHHHHCCCC---CHHHHHHHH
Q ss_conf 8977885404------99956786999999999411---8688897-----39999-99998522899---966899999
Q 001587 338 VFEFASVSCQ------NASPKYREAAVTAIGIISEG---CAEWMKE-----KLESV-LHIVLGALRDP---EQFVRGAAS 399 (1049)
Q Consensus 338 ll~~l~~~l~------~~~~~~r~~al~~l~~l~~~---~~~~~~~-----~l~~i-~~~l~~~l~d~---~~~vr~~a~ 399 (1049)
+++.+.+.+. +.+|+.|++|+.++|.++++ +...... .+..+ ...+++.+.|+ ++.||.+|+
T Consensus 400 ~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~ 479 (960)
T 1wa5_C 400 FLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAI 479 (960)
T ss_dssp HHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHH
T ss_conf 99999999987366961217999999999999998741256774123443569999999737874499888833039899
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-----------CCCCCCCHHHHHHHHHHH
Q ss_conf 999996744207898554547999998413999689999999999999852-----------123656459899999995
Q 001587 400 FALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM-----------GEEILPFLDPLMGKLLAA 468 (1049)
Q Consensus 400 ~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~v~~~a~~al~~l~~~~-----------~~~~~~~~~~il~~l~~~ 468 (1049)
|++|++++++. .+++..+++.+++.+.++++.|+.+|+.|+..|++.. .+.+.||++.+++.|+.+
T Consensus 480 ~~lg~~~~~~~---~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~l 556 (960)
T 1wa5_C 480 KYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIAL 556 (960)
T ss_dssp HHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999886589---999999999999984899721999999999999844364446654435987564699999999999
Q ss_pred HCCCC---H--HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHCHHCCC
Q ss_conf 02899---7--599999999999999841002232899999999998215--9034566778998999999953110026
Q 001587 469 LENSP---R--NLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLT--NDEDLRSRARATELLGLVAESVGRARME 541 (1049)
Q Consensus 469 l~~~~---~--~v~~~~~~~i~~l~~~~~~~~~~~~~~i~~~l~~~l~~~--~~~~~~~r~~a~~~l~~i~~~~~~~~~~ 541 (1049)
++... . .....++.+++.++...++.+.||+..+++.+...+... +.++...+..+++|++.++...+++.+.
T Consensus 557 l~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~ 636 (960)
T 1wa5_C 557 ILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP 636 (960)
T ss_dssp HHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH
T ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 97146787764322799999999999888861247999999999999999739897278899999999999638953699
Q ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 6629999999843699993256889999999999711374673333569998
Q 001587 542 PILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAF 593 (1049)
Q Consensus 542 ~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~ 593 (1049)
++.+.+++.+...++.+..+..++++..++.+.... ..+.+++..+++.++
T Consensus 637 ~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~ 687 (960)
T 1wa5_C 637 LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLL 687 (960)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHC
T ss_conf 999999999999998605766999999999999735-478899999999980
No 6
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=396.37 Aligned_cols=587 Identities=13% Similarity=0.152 Sum_probs=429.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 89999999931999899999999999873699919999999921999669999999999742410048997889999999
Q 001587 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQS 82 (1049)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ 82 (1049)
+++.++++.+++||++.|++|+++|++++++|+++..+.+++..+.+..+|++|+++|++.+.++|..++++.+..+|+.
T Consensus 7 ~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ 86 (971)
T 2x1g_F 7 ARLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQK 86 (971)
T ss_dssp ----CTHHHHHTSTTTC----CHHHHHTTTSTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHH
T ss_conf 99999999876999999999999999987497989999999835994989999999999999715864999999999999
Q ss_pred HHHHHHHCC--CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC------CHHHHHHHHHHHHHHHHHHH----
Q ss_conf 999984059--887999999999999702078999731499999950189------88899999999999466642----
Q 001587 83 LIESITLEH--SAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE------QEEHREVALILFSSLTETIG---- 150 (1049)
Q Consensus 83 ll~~l~~e~--~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~l~~~------~~~~r~~al~~l~~l~~~~~---- 150 (1049)
+++.+.... ++.+|++++.+++.|++.++| .||++++.+.+.++++ +...++.++.++..+++...
T Consensus 87 ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~ 164 (971)
T 2x1g_F 87 ILESIVRFAGGPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHT 164 (971)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999986799878999999999999997062--2437999999997153345678788999999999985998824685
Q ss_pred --------HCCCCCHHHHHHHHHHHHCCCCC-------HHHHHHHHHHHHHHHC--CCCCH-------------------
Q ss_conf --------12410199999999984079999-------6899999999987660--15890-------------------
Q 001587 151 --------QTFRPHFADMQALLLKCLQDETS-------NRVRIAALKAIGSFLE--FTNDG------------------- 194 (1049)
Q Consensus 151 --------~~~~~~~~~i~~~l~~~l~~~~~-------~~vr~~a~~~l~~~~~--~~~~~------------------- 194 (1049)
+.+..+++.+++++..++.+..+ ..++..+++|+..++. +.+..
T Consensus 165 ~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~L~~~~~~~ 244 (971)
T 2x1g_F 165 SVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHKCYWP 244 (971)
T ss_dssp SSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 78999999999987999999999998554678888642367999999999998257838656631999998643553023
Q ss_pred -------------H---------------------HHHHHHHHHHHHHHHHHHH---HHCCC---HHHHHHHHHHHHHHH
Q ss_conf -------------4---------------------6999984469999999988---50499---889999999999985
Q 001587 195 -------------A---------------------EVVKFREFIPSILNVSRQC---LASGE---EDVAVIAFEIFDELI 234 (1049)
Q Consensus 195 -------------~---------------------~~~~~~~~i~~ll~~l~~~---l~~~~---~~~~~~~~~~l~~l~ 234 (1049)
. ....+..++|.++...... ..+++ ++.....++.+..+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~ 324 (971)
T 2x1g_F 245 CIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSV 324 (971)
T ss_dssp SCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 23566555676774799999999999976801132088999999999986899999985656540689999999999999
Q ss_pred CCCCCCHH-----------HHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHH--------HHH--HHCCCH
Q ss_conf 36883425-----------54999999999863079---9994789999999999996218--------666--515785
Q 001587 235 ESPAPLLG-----------DSVKSIVHFSLEVSSSH---NLEPNTRHQAIQIISWLAKYKY--------NSL--KKHKLV 290 (1049)
Q Consensus 235 ~~~~~~~~-----------~~~~~l~~~l~~~~~~~---~~~~~~r~~a~~~l~~l~~~~~--------~~~--~~~~~~ 290 (1049)
+..+..+. +++..+++.++.+..++ ..++++...++++|.++++... ... .-.+++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~ 404 (971)
T 2x1g_F 325 ERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLY 404 (971)
T ss_dssp HHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 99999999873157653549999999999999758888886312458789999999999974133100089999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCC---------CHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHCC-----CCHHHHHH
Q ss_conf 87999996432047988878788---------67999999999999972511107789778854049-----99567869
Q 001587 291 IPILQVMCPLLAESNEAGEDDDL---------APDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQN-----ASPKYREA 356 (1049)
Q Consensus 291 ~~il~~l~~~l~~~~~~~~d~~~---------~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~~-----~~~~~r~~ 356 (1049)
..+++.++..+...+++ +.++| +.|+.+..++..++...++.+++.+++.+.+.+.+ .+|+.|++
T Consensus 405 ~~ll~~l~~~~~~p~~~-~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~ea 483 (971)
T 2x1g_F 405 AHLTRILVRKSEQPDEK-SLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEA 483 (971)
T ss_dssp HHHHHHHHHHTSCCCTT-TTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 99999999986199962-43356775799999999999999999999970999999999999999734689873899999
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 99999999411868889739999999985228--9996689999999999674420789855454799999841399968
Q 001587 357 AVTAIGIISEGCAEWMKEKLESVLHIVLGALR--DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDE 434 (1049)
Q Consensus 357 al~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~ 434 (1049)
++++++.+++++.+...++++.+++.+ ..+. |+++.||..+++++|++++++... .++++.+++.++.++ + ++
T Consensus 484 al~~l~~iae~~~~~~~~~l~~l~~~l-~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l-~--~~ 558 (971)
T 2x1g_F 484 CIYSFQSVAEHFGGEEKRQIPRLMRVL-AEIPYEKLNVKLLGTALETMGSYCNWLMEN-PAYIPPAINLLVRGL-N--SS 558 (971)
T ss_dssp HHHHHHHTTTC------CHHHHHHHHH-HHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SS
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH-C--HH
T ss_conf 999999998354803347799999999-856765367899999999999878888608-898999999999874-8--58
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHH
Q ss_conf 9999999999999852123656459899999995028--997599999999999999841-0022328999999999982
Q 001587 435 VKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN--SPRNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFMV 511 (1049)
Q Consensus 435 v~~~a~~al~~l~~~~~~~~~~~~~~il~~l~~~l~~--~~~~v~~~~~~~i~~l~~~~~-~~~~~~~~~i~~~l~~~l~ 511 (1049)
|+..|+.++..+++.++..+.||++.++..+...++. .+...+..++++++.++...+ +...+|+..+++.+...+.
T Consensus 559 v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~ 638 (971)
T 2x1g_F 559 MSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQ 638 (971)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999988862300799999999997278999289999999999999729999999999999989999999
Q ss_pred ----CC--CHHHHHHHHHHHHHHHHHHHHHCH------------HCCCCCHHHHHHHHHHCCC--CCCCHHHHHHHHHHH
Q ss_conf ----15--903456677899899999995311------------0026662999999984369--999325688999999
Q 001587 512 ----LT--NDEDLRSRARATELLGLVAESVGR------------ARMEPILPPFVEAAISGFG--LEFSELREYTHGFFS 571 (1049)
Q Consensus 512 ----~~--~~~~~~~r~~a~~~l~~i~~~~~~------------~~~~~~~~~i~~~l~~~l~--~~~~~~r~~~~~~l~ 571 (1049)
.. +++.......++.+++.+...++. +.+.++.+.+++.+...++ ..+.++.+.++.+++
T Consensus 639 ~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~ 718 (971)
T 2x1g_F 639 AICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMK 718 (971)
T ss_dssp HHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99856899822599999999999999841677768533345678836999999999999999864363789999999999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 99997113746733335699986156
Q 001587 572 NIAGVLEDGFAQYLPLVVPLAFSSCN 597 (1049)
Q Consensus 572 ~l~~~~~~~~~~~l~~i~~~l~~~~~ 597 (1049)
+++..+|.++.||++.+++.++..++
T Consensus 719 ~~~~~~~~~~~p~l~~~~~~l~~~~~ 744 (971)
T 2x1g_F 719 HAITNLRSSFQPMLQDLCLFIVASFQ 744 (971)
T ss_dssp HHHHHHHC--CTHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99986144042527899999999986
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=392.96 Aligned_cols=958 Identities=14% Similarity=0.154 Sum_probs=647.8
Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 19999999921999669999999999742410048997889999999999984059887999999999999702078999
Q 001587 36 VVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGE 115 (1049)
Q Consensus 36 ~~~~l~~il~~~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~ 115 (1049)
.+..+++-+. +++..+|..|..-|.+.+.......++.....+...+++.+. +.++.+|..++.+++.++....+ ..
T Consensus 7 ~l~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~-~~ 83 (1230)
T 1u6g_C 7 HISNLLEKMT-SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKE-YQ 83 (1230)
T ss_dssp HHHHHHHHTT-CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCH-HH
T ss_pred HHHHHHHHCC-CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHCCH-HH
T ss_conf 9999997558-987859999999999997416657875679999999999866-99989999999999999975879-89
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 7314999999501898889999999999946664212------4101999999999840799996899999999987660
Q 001587 116 WPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT------FRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLE 189 (1049)
Q Consensus 116 w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~------~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~~~~ 189 (1049)
++.+++.+...+.+++..+|..+..+++.++...+.. ...+++.+++.+..++.+.+++.+|..++.++..++.
T Consensus 84 ~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 84 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 163 (1230)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999998669838899999999999999679744444117889999999999987578846799999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 15890469999844699999999885049988999999999998536883-42554999999999863079999478999
Q 001587 190 FTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP-LLGDSVKSIVHFSLEVSSSHNLEPNTRHQ 268 (1049)
Q Consensus 190 ~~~~~~~~~~~~~~i~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~r~~ 268 (1049)
..+.. +..+++.++..+...+.+.+..++..++.++..++...+. ++...++.+++.+.. .. +...|..
T Consensus 164 ~~~~~-----l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~----~~-~~~~r~~ 233 (1230)
T 1u6g_C 164 RQGGL-----LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSK----ND-SMSTTRT 233 (1230)
T ss_dssp HTCSS-----CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHH----TC-SSCSCTT
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC----CC-CHHHHHH
T ss_conf 82767-----78879999999999875996899999999999999856899999999999998616----77-5568999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHH---CHHHHHHHHHHH
Q ss_conf 99999999962186665157858799999643204798887878867999999999999972511---107789778854
Q 001587 269 AIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH---VFPPVFEFASVS 345 (1049)
Q Consensus 269 a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~---~~~~ll~~l~~~ 345 (1049)
+++++..++...+..+. +++..+++.++..+.+.+ ..+|..+..++..++..+++. .++.+++.+...
T Consensus 234 a~~~l~~l~~~~~~~~~--~~l~~l~~~ll~~l~d~~-------~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~ 304 (1230)
T 1u6g_C 234 YIQCIAAISRQAGHRIG--EYLEKIIPLVVKFCNVDD-------DELREYCIQAFESFVRRCPKEVYPHVSTIINICLKY 304 (1230)
T ss_dssp HHHHHHHHHHHSSGGGT--TSCTTHHHHHHHHHSSCC-------TTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998689899--889999999999866897-------789999999999999978487777689999999998
Q ss_pred HC-------------------------------------CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 04-------------------------------------99956786999999999411868889739999999985228
Q 001587 346 CQ-------------------------------------NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR 388 (1049)
Q Consensus 346 l~-------------------------------------~~~~~~r~~al~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~ 388 (1049)
+. +..|+.|.+|+.+++.++...++.+.++++.+++.+...+.
T Consensus 305 l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~ 384 (1230)
T 1u6g_C 305 LTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFK 384 (1230)
T ss_dssp CCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTS
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
T ss_conf 27899888764411011223344653011001366645556779999999999999974666799999999899998717
Q ss_pred CCCHHHHHHHHHHHHHHHHHHC-------------------HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9996689999999999674420-------------------789855454799999841399968999999999999985
Q 001587 389 DPEQFVRGAASFALGQFAEYLQ-------------------PEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCED 449 (1049)
Q Consensus 389 d~~~~vr~~a~~~l~~l~~~~~-------------------~~~~~~~~~il~~l~~~l~~~~~~v~~~a~~al~~l~~~ 449 (1049)
|++..||.+++.+++.+....+ ..+..+++.+++.+.+.+.++++++|..++.+++.++..
T Consensus 385 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~ 464 (1230)
T 1u6g_C 385 EREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV 464 (1230)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 98657999999999999997242434346752013564559999987469999999986137787999999999999997
Q ss_pred HCCCCCCCHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 212365645989999999502899--7599999999999999841-0022328999999999982159034566778998
Q 001587 450 MGEEILPFLDPLMGKLLAALENSP--RNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFMVLTNDEDLRSRARATE 526 (1049)
Q Consensus 450 ~~~~~~~~~~~il~~l~~~l~~~~--~~v~~~~~~~i~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~ 526 (1049)
++..+.+|++.+++.+...+.+.. ..++..++.+++.+....+ +.|.+|++.++|.+...+.. ...+++..++.
T Consensus 465 ~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d---~~~~v~~~al~ 541 (1230)
T 1u6g_C 465 LPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGD---PFYKITSEALL 541 (1230)
T ss_dssp STTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTC---SSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHH
T ss_conf 611057779999999999974878851689999999999998389887886799999999999714---24689999999
Q ss_pred HHHHHHHHHCH------HCCCCCHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99999995311------002666299999998436--9999325688999999999971137467333356999861567
Q 001587 527 LLGLVAESVGR------ARMEPILPPFVEAAISGF--GLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNL 598 (1049)
Q Consensus 527 ~l~~i~~~~~~------~~~~~~~~~i~~~l~~~l--~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~ 598 (1049)
+++.++..+|+ ..+.||.+.+++.++..+ .+.+..+|..+..+++.++...|..+.++++.+++.+...+..
T Consensus 542 ~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~ 621 (1230)
T 1u6g_C 542 VTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKN 621 (1230)
T ss_dssp HHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99999987167555653232789999999999987326998899999999999999982703244388999999988445
Q ss_pred CCCCCCCCCCCCHHHHCCCCC-CCCCCCH---HH-CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHH
Q ss_conf 988766889994011026899-8888401---10-014663055515011299999999999998212011-03999999
Q 001587 599 DDGSAVDIDGSDDENINGFGG-VSSDDEA---HC-ERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYA-PFLEESLK 672 (1049)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~-~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~~~~~-p~~~~~~~ 672 (1049)
.... ......++.... ....+.. .. -+.+.. .++......|..++.+++.++...+..+. +++..++.
T Consensus 622 e~~r-----~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~-~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~ 695 (1230)
T 1u6g_C 622 EITR-----LTTVKALTLIAGSPLKIDLRPVLGEGVPILAS-FLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLD 695 (1230)
T ss_dssp SSHH-----HHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHH-HTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHT
T ss_pred CHHH-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 3059-----99999999998185644368889999999999-99867888999999999999960433389899999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH---------------CCCCCCHHHHHHHH---HHH---------HHHH
Q ss_conf 99741207996799999999999999999963---------------12899907899999---999---------9999
Q 001587 673 ILVRHASYFHEDVRYQAVFALKNILTAAHAIF---------------QSHNEGPAKAREIL---DTV---------MNIF 725 (1049)
Q Consensus 673 ~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~---------------~~~~~~~~~~~~~~---~~i---------~~~l 725 (1049)
.+.++.++.+..++..+..++..++....... ....-.......++ ..+ ++.+
T Consensus 696 ~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l 775 (1230)
T 1u6g_C 696 ELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDL 775 (1230)
T ss_dssp TCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 98763575418789999999999988491267776776899999997586210578999999999998347887889999
Q ss_pred HHHHHH------C--CHHHHHHHHHHHHHHHHHHHCCCCC---------------HHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999600------8--9198999999999999998198651---------------7989999999999997333211889
Q 001587 726 IRTMTE------D--DDKDVVAQACTSIVEIINDYGYMAV---------------EPYMSRLVDATLLLLREESTCQQPD 782 (1049)
Q Consensus 726 ~~~~~~------~--~~~~~~~~~~~~l~~~i~~~g~~~~---------------~~~~~~i~~~l~~~l~~~~~~~~~~ 782 (1049)
+..+.. . .+......+..+++.++...|.... .+....+.-..+.-+... ...
T Consensus 776 l~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~----~~~ 851 (1230)
T 1u6g_C 776 LRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHH----IDL 851 (1230)
T ss_dssp HHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHH----SCC
T ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC----CCC
T ss_conf 9998500357887320001048999999999984656668999999998378876679999999999986156----787
Q ss_pred CCC-CCCC---CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 999-8776---566410199999987479999999299819989997999997442699922302111729998863098
Q 001587 783 NDS-DIED---DDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGS 858 (1049)
Q Consensus 783 ~~~-~~~~---~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~ 858 (1049)
... +... .--.+..+.+..+++.+++.++. ..++.++|.+++.+.+. +..|...+..+.+++...+.
T Consensus 852 ~~~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~-------~~~~~~lp~ll~~l~~~--~~~~~~~l~al~e~i~~~~~ 922 (1230)
T 1u6g_C 852 SGQLELKSVILEAFSSPSEEVKSAASYALGSISV-------GNLPEYLPFVLQEITSQ--PKRQYLLLHSLKEIISSASV 922 (1230)
T ss_dssp CSCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH-------HTHHHHHHHHHHHHHSC--GGGHHHHHHHHHHHHHSSCS
T ss_pred CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHCCCH
T ss_conf 6564189999998479977899999999687752-------69998899999987266--03249889999999823876
Q ss_pred -CHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH---------------------------------
Q ss_conf -5132076369999984289995767789999999886158221467---------------------------------
Q 001587 859 -PIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKY--------------------------------- 904 (1049)
Q Consensus 859 -~~~~~~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~--------------------------------- 904 (1049)
...||.+.+++.++..+.+.+..+|..++.|+|.++...++.+.|.
T Consensus 923 ~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~ 1002 (1230)
T 1u6g_C 923 VGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDP 1002 (1230)
T ss_dssp TTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 66776699999999987338304468999988756650676888899999856997889999999999997068233589
Q ss_pred -HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHCCCCCCH-----------------H
Q ss_conf -9999986643117999872477459999999997489999-9-542899998218998848-----------------8
Q 001587 905 -YGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSI-P-LNQVLPVLLKVLPLKEDF-----------------E 964 (1049)
Q Consensus 905 -~~~~l~~L~~~l~~~~~~~~~~~~a~~~l~~l~~~~~~~~-~-~~~~l~~~~~~lp~~~d~-----------------~ 964 (1049)
+..+++.+...+ .+++..+|.+|+.+++.+++..|+.+ + ++.++|.++...+.+.+. +
T Consensus 1003 ~l~~~~~~ll~~l--~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~ 1080 (1230)
T 1u6g_C 1003 LLKNCIGDFLKTL--EDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLD 1080 (1230)
T ss_dssp HHHHHSTTTHHHH--SSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHH
T ss_pred HHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHEEECCCCCCCCCCCCHH
T ss_conf 8999899999864--89858799999999999984285768977988989999883026876013305896023677489
Q ss_pred HHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 42999999999882078122000569999999972699998579999999999999873650999984299999999986
Q 001587 965 ESMAVYNCISTLVLSSNPQILSLVPELVNLFAEVVVSPEESSEVKSQVGMAFSHLISLYGQQMQPLLSNLSPAHATALAA 1044 (1049)
Q Consensus 965 ~~~~~~~~l~~l~~~~~~~v~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~ 1044 (1049)
..+.++.++..++..+.+.+ .+..++..+...+. .+.+.+.....++..+....|....+-+.++-...++.|++
T Consensus 1081 ~rk~a~~~~~~ll~~~~~~i--~~~~~~~~~~~gl~---d~~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 1155 (1230)
T 1u6g_C 1081 IRKAAFECMYTLLDSCLDRL--DIFEFLNHVEDGLK---DHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTT 1155 (1230)
T ss_dssp HHHHHHHHHHHHHHSSCSSS--CHHHHHHHHHHTTS---SCHHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999888747--89999999980467---66889999999999998408798999999999999999841
No 8
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=1.00 E-value=1 Score=391.85 Aligned_cols=530 Identities=16% Similarity=0.190 Sum_probs=398.8
Q ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 58999999993-19998999999999998736999199999999219996699999999997424100489978899999
Q 001587 2 AQSLELLLIQF-LMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK 80 (1049)
Q Consensus 2 ~~~l~~ll~~~-~s~d~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~ 80 (1049)
.+++.++++.+ .++|++.|++|+++|++++++|+++..+.+++.++.+..+|++|+++|++.+.++|..++++.+..+|
T Consensus 23 ~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir 102 (963)
T 2x19_B 23 VENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLK 102 (963)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHCCHHHHHHHH
T ss_conf 99999999998359798999999999999846999999999986579725889999999999997388749999999999
Q ss_pred HHHHHHHHHCC--CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHH---
Q ss_conf 99999984059--88799999999999970207899973149999995018-----988899999999999466642---
Q 001587 81 QSLIESITLEH--SAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQS-----EQEEHREVALILFSSLTETIG--- 150 (1049)
Q Consensus 81 ~~ll~~l~~e~--~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~l~~-----~~~~~r~~al~~l~~l~~~~~--- 150 (1049)
+.+++.+.... ++.+|++++.+++.|++.++|. .||++++.+.+.+++ ++...++.++.++..+++...
T Consensus 103 ~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~ 181 (963)
T 2x19_B 103 AQLFTQITRFASGSKIVLTRLCVALASLALSMMPD-AWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSR 181 (963)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTT-TSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHCCC
T ss_conf 99999999874898899999999999999874831-15559999999986433578747889999999986899885065
Q ss_pred ----------HCCCCCHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHC------------------------------
Q ss_conf ----------124101999999999840799996-899999999987660------------------------------
Q 001587 151 ----------QTFRPHFADMQALLLKCLQDETSN-RVRIAALKAIGSFLE------------------------------ 189 (1049)
Q Consensus 151 ----------~~~~~~~~~i~~~l~~~l~~~~~~-~vr~~a~~~l~~~~~------------------------------ 189 (1049)
+.+..+++.+++++...+.+..+. .++..+++|+..++.
T Consensus 182 ~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~~~~~~~a~~ 261 (963)
T 2x19_B 182 LPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDSELFDSSVE 261 (963)
T ss_dssp C---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTSTTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 86999999999999878899999999982778805799999999999982899853416899999998679647999999
Q ss_pred -------CCCCHHHHHHHHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHH
Q ss_conf -------1589046999984469999999---9885049988999999999998536883425------54999999999
Q 001587 190 -------FTNDGAEVVKFREFIPSILNVS---RQCLASGEEDVAVIAFEIFDELIESPAPLLG------DSVKSIVHFSL 253 (1049)
Q Consensus 190 -------~~~~~~~~~~~~~~i~~ll~~l---~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~------~~~~~l~~~l~ 253 (1049)
....+.....+..+++.++... ......++.+.....++.+..+++..+..+. +.+..+++.++
T Consensus 262 ~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll 341 (963)
T 2x19_B 262 AIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIM 341 (963)
T ss_dssp HHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999753112457799999999997407999999987798999999999999999869999737556589999999999
Q ss_pred HHHHCC---CCCHHHHHHHHHHHHHHHHHH--------HHHH-HHCCCHHHHHHHHHHHHCCCCCCC-----CC--CCC-
Q ss_conf 863079---999478999999999999621--------8666-515785879999964320479888-----78--788-
Q 001587 254 EVSSSH---NLEPNTRHQAIQIISWLAKYK--------YNSL-KKHKLVIPILQVMCPLLAESNEAG-----ED--DDL- 313 (1049)
Q Consensus 254 ~~~~~~---~~~~~~r~~a~~~l~~l~~~~--------~~~~-~~~~~~~~il~~l~~~l~~~~~~~-----~d--~~~- 313 (1049)
.+..++ ..++.+...++++|.++++.. +... .-.+++..+++.++..+...++++ +| +++
T Consensus 342 ~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~ 421 (963)
T 2x19_B 342 FCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFR 421 (963)
T ss_dssp HHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 99758888872034544129999999999986234445788999999999999999999809983022677763899999
Q ss_pred CHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 679999999999999725111077897788540----4999567869999999994118688897399999999852289
Q 001587 314 APDRAAAEVIDTMALNLAKHVFPPVFEFASVSC----QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD 389 (1049)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l----~~~~~~~r~~al~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d 389 (1049)
+.|..+..++..++...+..+++.+++.+.+.+ .+.+|+.++++++++|.+++++.+...+.++.+++.+. .+.+
T Consensus 422 ~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~ 500 (963)
T 2x19_B 422 IYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISI 500 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCC
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HCCC
T ss_conf 999999999999999706899999999999999725799866799899999999970438224678999999998-5799
Q ss_pred CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 99668999999999967442078985545479999984139996899999999999998521236564598999999950
Q 001587 390 PEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAAL 469 (1049)
Q Consensus 390 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~il~~l~~~l 469 (1049)
+++.||..+++++|++++++... .++++.+++.++..+.+ ++|+..|+.++..+++.++..+.||++.+++.+...+
T Consensus 501 ~~~~vr~~~~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l 577 (963)
T 2x19_B 501 SNVQLADTVMFTIGALSEWLADH-PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVL 577 (963)
T ss_dssp CSHHHHHHHHHHHHHTHHHHHHC-HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 85899999999999888888758-89899999999987178--4689999999999999989987766999999999986
Q ss_pred CC--CCHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHC----CCHHH-HHHHHHHHHHHHHHHHHHC
Q ss_conf 28--997599999999999999841-00223289999999999821----59034-5667789989999999531
Q 001587 470 EN--SPRNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFMVL----TNDED-LRSRARATELLGLVAESVG 536 (1049)
Q Consensus 470 ~~--~~~~v~~~~~~~i~~l~~~~~-~~~~~~~~~i~~~l~~~l~~----~~~~~-~~~r~~a~~~l~~i~~~~~ 536 (1049)
.. .+...+..++++++.++...+ +.+.+|+..+++.+...+.. ..+++ ...+...+++++.+++.++
T Consensus 578 ~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~ 652 (963)
T 2x19_B 578 MKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLD 652 (963)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 357898488999999999999629999999999999989999999998278987789999999999999997748
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=360.90 Aligned_cols=765 Identities=12% Similarity=0.122 Sum_probs=537.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHCCCC------CCCCCCH
Q ss_conf 99966999999999974241004899788999999999998405-9887999999999999702078------9997314
Q 001587 47 AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLE-HSAPVRRASANVVSIIAKYAVP------AGEWPDL 119 (1049)
Q Consensus 47 ~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e-~~~~vr~~~~~~i~~i~~~~~~------~~~w~~l 119 (1049)
+++..+|+.|...|++.- .+....+...|++.+.++ .+..+|..++..+........+ ...|+.+
T Consensus 12 s~d~~~r~~A~~~L~~~~--------~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l 83 (876)
T 1qgr_A 12 SPDRLELEAAQKFLERAA--------VENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAI 83 (876)
T ss_dssp CSCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHH--------HCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf 989899999999999987--------168046999999998578998799999999998760554347678998644069
Q ss_pred HHH--------HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHC
Q ss_conf 999--------99950189888999999999994666421241019999999998407999--96899999999987660
Q 001587 120 LPF--------LFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDET--SNRVRIAALKAIGSFLE 189 (1049)
Q Consensus 120 l~~--------l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~~vr~~a~~~l~~~~~ 189 (1049)
.+. +++.+.++++.. ..+..+++.++..... ..+++++++.+...+.+ + ++.+|..++.++..++.
T Consensus 84 ~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~--~~~w~~ll~~l~~~l~~-~~~~~~~r~~al~~l~~l~~ 159 (876)
T 1qgr_A 84 DANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP--VNQWPELIPQLVANVTN-PNSTEHMKESTLEAIGYICQ 159 (876)
T ss_dssp CHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG--GTCCTTHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999999867994788-9999999999984676--22568899999998708-89879999999999999987
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHHHHHCCCCCHHH
Q ss_conf 15890469999844699999999885049--98899999999999853688342554--999999999863079999478
Q 001587 190 FTNDGAEVVKFREFIPSILNVSRQCLASG--EEDVAVIAFEIFDELIESPAPLLGDS--VKSIVHFSLEVSSSHNLEPNT 265 (1049)
Q Consensus 190 ~~~~~~~~~~~~~~i~~ll~~l~~~l~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~l~~~l~~~~~~~~~~~~~ 265 (1049)
.... ..+..+++.++..+.+.+.++ +.+++..+++++..++...+..+... ...+++.+.....+ .++.+
T Consensus 160 ~~~~----~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~--~~~~v 233 (876)
T 1qgr_A 160 DIDP----EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC--PDTRV 233 (876)
T ss_dssp HSCH----HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTC--SSHHH
T ss_pred HCCH----HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHH
T ss_conf 4587----66786799999999986167999889999999999999999999887178999999999987179--98899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-------------
Q ss_conf 99999999999962186665157858-7999996432047988878788679999999999999725-------------
Q 001587 266 RHQAIQIISWLAKYKYNSLKKHKLVI-PILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA------------- 331 (1049)
Q Consensus 266 r~~a~~~l~~l~~~~~~~~~~~~~~~-~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~------------- 331 (1049)
|..+++++..+++..+..+.. ++. .+++.++..+.+.+ ..++..+.+++..++....
T Consensus 234 r~~a~~~l~~l~~~~~~~~~~--~~~~~l~~~~~~~~~~~~-------~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~ 304 (876)
T 1qgr_A 234 RVAALQNLVKIMSLYYQYMET--YMGPALFAITIEAMKSDI-------DEVALQGIEFWSNVCDEEMDLAIEASEAAEQG 304 (876)
T ss_dssp HHHHHHHHHHHHHHSGGGCHH--HHTTTHHHHHHHHHTCSS-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 999999999999986999998--877899999999963873-------49999999999999887876766510011247
Q ss_pred -----------HHCHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf -----------1110778977885404-------9995678699999999941186888973999999998522899966
Q 001587 332 -----------KHVFPPVFEFASVSCQ-------NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQF 393 (1049)
Q Consensus 332 -----------~~~~~~ll~~l~~~l~-------~~~~~~r~~al~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~ 393 (1049)
...+..+++.+.+.+. +.+|..|.++..+++.+++..++ ..++.+++.+...+.|+++.
T Consensus 305 ~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~~~~ 381 (876)
T 1qgr_A 305 RPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWR 381 (876)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHCCCCCHH
T ss_conf 775420189999989887079998753133444545217999999999999987758---66999999999884699828
Q ss_pred HHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHC
Q ss_conf 89999999999674420-7898554547999998413999689999999999999852123--65645989999999502
Q 001587 394 VRGAASFALGQFAEYLQ-PEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE--ILPFLDPLMGKLLAALE 470 (1049)
Q Consensus 394 vr~~a~~~l~~l~~~~~-~~~~~~~~~il~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~--~~~~~~~il~~l~~~l~ 470 (1049)
+|.+++++++.++...+ ..+.++++.+++.++..+.|+++.||..++++++.+++..+.. ..+|++.+++.++..+.
T Consensus 382 ~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~ 461 (876)
T 1qgr_A 382 YRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (876)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHC
T ss_conf 99999999999974887778999999999999998679978999999999999998572011447779999999999875
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH--------------HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8997599999999999999841--------------00223289999999999821590345667789989999999531
Q 001587 471 NSPRNLQETCMSAIGSVAAAAE--------------QAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVG 536 (1049)
Q Consensus 471 ~~~~~v~~~~~~~i~~l~~~~~--------------~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~i~~~~~ 536 (1049)
+. ..++..++.+++.++...+ +.+.||++.+++.+...+...+.+...+|..++++++.++..+
T Consensus 462 ~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~- 539 (876)
T 1qgr_A 462 AE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNS- 539 (876)
T ss_dssp SC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTC-
T ss_pred CC-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC-
T ss_conf 88-8899999999999999850201234444555403215769999999999972767420469999999999999977-
Q ss_pred HHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC
Q ss_conf 10026662999999984369999325688999999999971137467333356999861567988766889994011026
Q 001587 537 RARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENING 616 (1049)
Q Consensus 537 ~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 616 (1049)
|.++.+|+..+++.++..+...- ..+..
T Consensus 540 -----------------------------------------~~~~~~~~~~l~~~l~~~l~~~~----~~~~~------- 567 (876)
T 1qgr_A 540 -----------------------------------------AKDCYPAVQKTTLVIMERLQQVL----QMESH------- 567 (876)
T ss_dssp -----------------------------------------CSTTHHHHHHHHHHHHHHHHHHH----TTTTS-------
T ss_pred -----------------------------------------CHHHHHHHHHHHHHHHHHHHHHH----HHHHC-------
T ss_conf -----------------------------------------43118999999999999999999----88712-------
Q ss_pred CCCCCCCCCHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHH
Q ss_conf 89988884011001466305551501129999999999999821-2011039999999974120799--67999999999
Q 001587 617 FGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTK-SSYAPFLEESLKILVRHASYFH--EDVRYQAVFAL 693 (1049)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~-~~~~p~~~~~~~~l~~~~~~~~--~~vr~~a~~~l 693 (1049)
...+ ++ +....+.+..++.+++.++...+ ..+.||++.+++.+...+.... ..+|..++.++
T Consensus 568 --~~~~-~d------------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l 632 (876)
T 1qgr_A 568 --IQST-SD------------RIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAV 632 (876)
T ss_dssp --CCST-TH------------HHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHH
T ss_pred --CCCH-HH------------HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf --4886-35------------99999999999999999999828542057899999999999985368888508999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999963128999078999999999999999600891989999999999999981986517989999999999997
Q 001587 694 KNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLR 773 (1049)
Q Consensus 694 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~ 773 (1049)
..++...+. ...++++.+++.+...+....+.+++..++.+++.++..+| ..+.++.+.+++.+...+.
T Consensus 633 ~~l~~~~~~----------~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~ 701 (876)
T 1qgr_A 633 STLVEVLGG----------EFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ-SNIIPFCDEVMQLLLENLG 701 (876)
T ss_dssp HHHHHHHGG----------GGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH----------HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHC
T ss_conf 999999876----------09999999999999987586508799999999999999887-8546459999999999748
Q ss_pred HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC----------CCCCH
Q ss_conf 33321188999987765664101999999874799999992998199899979999974426999----------22302
Q 001587 774 EESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRP----------LQDRT 843 (1049)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~----------~~~r~ 843 (1049)
... .+..+...+..+++.++...|+.|.+|++.++|.+...++.... ..+|.
T Consensus 702 ~~~------------------~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~ 763 (876)
T 1qgr_A 702 NEN------------------VHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRE 763 (876)
T ss_dssp CTT------------------SCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHH
T ss_pred CCC------------------CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 712------------------33876399999999999970352799999999999999855589997588999999999
Q ss_pred HHHHHHHHHHHHCCC----------CHHHCHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHCCC-CHHHH-HHHHH
Q ss_conf 111729998863098----------51320763699999842899--957677899999998861582-21467-99999
Q 001587 844 MVVATLAEVARDMGS----------PIAAYVDRVMPLVLKELASP--DAMNRRNAAFCVGELCKNGGE-SALKY-YGDIL 909 (1049)
Q Consensus 844 ~a~~~l~~l~~~~~~----------~~~~~~~~i~~~ll~~l~~~--~~~vr~~a~~~lg~l~~~~~~-~~~~~-~~~~l 909 (1049)
.++.+++.+++..+. ...||++.+++.+.....++ +..+|..|+.++|.++...+. .+.+| .+.++
T Consensus 764 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i 843 (876)
T 1qgr_A 764 SCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMI 843 (876)
T ss_dssp HHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHH
T ss_conf 99999999999974575555543889999999999999998658888889999999999999988284889999704899
Q ss_pred HHHHH-HHCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 86643-117999872477459999999997489
Q 001587 910 RGLYP-LFGDSEPDDAVRDNAAGAVARMIMVNP 941 (1049)
Q Consensus 910 ~~L~~-~l~~~~~~~~~~~~a~~~l~~l~~~~~ 941 (1049)
+.+.. .+. +++..+|.+|+.++|.+.+..+
T Consensus 844 ~~ll~~~l~--~~~~~~r~~a~~a~~~~~~~~~ 874 (876)
T 1qgr_A 844 HELLTEGRR--SKTNKAKTLARWATKELRKLKN 874 (876)
T ss_dssp HHHHHHHHH--CSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHC
T ss_conf 999998754--6887689999999999997534
No 10
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=1.00 E-value=1 Score=360.32 Aligned_cols=765 Identities=12% Similarity=0.132 Sum_probs=492.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 58999999993199989999999999987369991999999992199966999999999974241004899788999999
Q 001587 2 AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ 81 (1049)
Q Consensus 2 ~~~l~~ll~~~~s~d~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~R~~a~~~l~~~i~~~w~~~~~~~~~~i~~ 81 (1049)
.+++.++++.+++|+++.|++|+++|++++++|+++..+.+++.++.+..+|++|+++|++.+.++|..++++.+..+|+
T Consensus 15 ~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~ 94 (1049)
T 3m1i_C 15 IALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRN 94 (1049)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 99999999998689938999999999998839569999999986299889999999999999976070499999999999
Q ss_pred HHHHHHHHCC--------CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 9999984059--------887999999999999702078999731499999950189888999999999994666421--
Q 001587 82 SLIESITLEH--------SAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ-- 151 (1049)
Q Consensus 82 ~ll~~l~~e~--------~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~-- 151 (1049)
.+++.+.++. ++.+|++++.+++.|++.++| +.||++++.+.+.++ .+...++.++.+|..+++...+
T Consensus 95 ~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~ 172 (1049)
T 3m1i_C 95 FVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFS 172 (1049)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999862776200000289999999999999997681-115479999999871-585889999999999999998726
Q ss_pred --------------CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHH--------------------
Q ss_conf --------------2410199999999984079999689999999998766015890469--------------------
Q 001587 152 --------------TFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEV-------------------- 197 (1049)
Q Consensus 152 --------------~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~-------------------- 197 (1049)
.+..+++.+++.+..++.+..+..++..+++|+..++.|.+.+...
T Consensus 173 ~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~~~~~~~ 252 (1049)
T 3m1i_C 173 AEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTSPDTRA 252 (1049)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 00132689999999999999999999999998668889999999999999860889988605599999998689876799
Q ss_pred ----------------------HHHHHHHHHHHHHHHH-----------HH---HCCCHHHHHHHHHHHHHHHCCC----
Q ss_conf ----------------------9998446999999998-----------85---0499889999999999985368----
Q 001587 198 ----------------------VKFREFIPSILNVSRQ-----------CL---ASGEEDVAVIAFEIFDELIESP---- 237 (1049)
Q Consensus 198 ----------------------~~~~~~i~~ll~~l~~-----------~l---~~~~~~~~~~~~~~l~~l~~~~---- 237 (1049)
..+..+++.++..+.. .. .+.+.+.....++.+..+++..
T Consensus 253 ~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~ 332 (1049)
T 3m1i_C 253 ITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALL 332 (1049)
T ss_dssp HHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999994889950346889999999999999988627985417877445771028999999999999999999998
Q ss_pred --CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH---HHHH-HHCCCHHHHHHHHHHHHCCCCCCC---
Q ss_conf --8342554999999999863079999478999999999999621---8666-515785879999964320479888---
Q 001587 238 --APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYK---YNSL-KKHKLVIPILQVMCPLLAESNEAG--- 308 (1049)
Q Consensus 238 --~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~---~~~~-~~~~~~~~il~~l~~~l~~~~~~~--- 308 (1049)
++.+.+++..+++.++.+...+ ++++...++++|.++++.. +... ...+++.++++.+++.|...++++
T Consensus 333 ~~~~~~~~~l~~~l~~ll~~~~~~--d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~ 410 (1049)
T 3m1i_C 333 ESDESLRELLLNAHQYLIQLSKIE--ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVE 410 (1049)
T ss_dssp HSCGGGHHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 288214799999999999988689--089999999999999999974635899999999999999998658996200005
Q ss_pred ------------CCCCCCHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHCCHHHHH-
Q ss_conf ------------787886799999999999997251110778977885404--99956786999999999411868889-
Q 001587 309 ------------EDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQ--NASPKYREAAVTAIGIISEGCAEWMK- 373 (1049)
Q Consensus 309 ------------~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ll~~l~~~l~--~~~~~~r~~al~~l~~l~~~~~~~~~- 373 (1049)
++|+|+.++++..++..++...+..+++.+++.+.+.+. +.+|+.|+++++++|.+++++.....
T Consensus 411 dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~ 490 (1049)
T 3m1i_C 411 NDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEK 490 (1049)
T ss_dssp CTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHH
T ss_pred CCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 79985048653122279999999999999883698999999999999872778789899999999999986023762557
Q ss_pred HHHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 739999999985228-----999668999999999967442078985545479999984139996899999999999998
Q 001587 374 EKLESVLHIVLGALR-----DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCE 448 (1049)
Q Consensus 374 ~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~v~~~a~~al~~l~~ 448 (1049)
.+++.+++.+..... |+++.||..+++++|++++++... .++++.+++.++.++.+++++|+..||.++..+++
T Consensus 491 ~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 491 RFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999877654356654999988999999779999867-89999999999998618987899999999999999
Q ss_pred HHCCCCC--------CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 5212365--------6459899999995028997599999999999999841--00223289999999999821590345
Q 001587 449 DMGEEIL--------PFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE--QAFIPYAERVLELLKIFMVLTNDEDL 518 (1049)
Q Consensus 449 ~~~~~~~--------~~~~~il~~l~~~l~~~~~~v~~~~~~~i~~l~~~~~--~~~~~~~~~i~~~l~~~l~~~~~~~~ 518 (1049)
.++..+. ||++.++..+...+...+..-...++++++.++...+ +...+|+..+++.+...+...
T Consensus 570 ~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~----- 644 (1049)
T 3m1i_C 570 KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTI----- 644 (1049)
T ss_dssp HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHH-----
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-----
T ss_conf 988986115677877579999998999998589999999999999999759978999999999998899999999-----
Q ss_pred HHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHCCCCCCCH-HH--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 6677899899999995311002666299999998436999932-56--88999999999971137467333356999861
Q 001587 519 RSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSE-LR--EYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSS 595 (1049)
Q Consensus 519 ~~r~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~-~r--~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~ 595 (1049)
+.... .++.... +.. .+ ...+.++..++..+|..|.|+++.++..++..
T Consensus 645 ---------~~~~~--~~~~~~~-----------------d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~ 696 (1049)
T 3m1i_C 645 ---------VEQST--ANPTLLL-----------------DSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQL 696 (1049)
T ss_dssp ---------HHHHH--HCGGGGG-----------------SHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH
T ss_pred ---------HHHHH--HCHHHHC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---------99873--1646404-----------------8799999999999999999985678899999999999999
Q ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHH-----HHCHHHHHHH
Q ss_conf 56798876688999401102689988884011001466305551501129999999999999821-----2011039999
Q 001587 596 CNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTK-----SSYAPFLEES 670 (1049)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~k~~a~~~l~~~~~~~~-----~~~~p~~~~~ 670 (1049)
.+ . ....+.......+ ..+..++..+
T Consensus 697 ~~------------------------------------------------~-~~~~~~~~~~~~g~~~~~~p~~~~~~~~ 727 (1049)
T 3m1i_C 697 YR------------------------------------------------A-VSSMISAQVAAEGLIATKTPKVRGLRTI 727 (1049)
T ss_dssp HH------------------------------------------------H-HHHHHHHHHHHHCGGGGGSHHHHHHHHH
T ss_pred HH------------------------------------------------H-HHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99------------------------------------------------9-9998999997058502210889999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 99997412079967999999999999999999631289990789999999999999996008919899999999999999
Q 001587 671 LKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIIN 750 (1049)
Q Consensus 671 ~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~i~ 750 (1049)
++.+...+......... +..+
T Consensus 728 -----------------------------------------------~~~l~~ll~~~~~~~~~----------l~~~-- 748 (1049)
T 3m1i_C 728 -----------------------------------------------KKEILKLVETYISKARN----------LDDV-- 748 (1049)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHCSC----------HHHH--
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHCCC----------HHHH--
T ss_conf -----------------------------------------------99999999999984797----------7999--
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 81986517989999999999997333211889999877656641019999998747999999929981998999799999
Q 001587 751 DYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLM 830 (1049)
Q Consensus 751 ~~g~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~ 830 (1049)
..++.+.+++.+...+.....+. .+. .+.++++.++..+|+.+.++++.+++.+.
T Consensus 749 ------~~~~~~~~l~~ll~~~~~~~~~~---------------~~~----~~l~l~~~ii~~~~~~~~~~l~~i~~~l~ 803 (1049)
T 3m1i_C 749 ------VKVLVEPLLNAVLEDYMNNVPDA---------------RDA----EVLNCMTTVVEKVGHMIPQGVILILQSVF 803 (1049)
T ss_dssp ------HHHTHHHHHHHHHHHHHHSCGGG---------------CCT----HHHHHHHHHHHHHGGGCHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHCCCCC---------------CCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ------99878999999999887189632---------------368----79999999999988760666899999999
Q ss_pred HH----HCC--CCCCCCCHHHHHHHHHHHHHCCCCHHH----CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC--
Q ss_conf 74----426--999223021117299988630985132----076369999984289995767789999999886158--
Q 001587 831 KF----AKS--SRPLQDRTMVVATLAEVARDMGSPIAA----YVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGG-- 898 (1049)
Q Consensus 831 ~~----l~~--~~~~~~r~~a~~~l~~l~~~~~~~~~~----~~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~-- 898 (1049)
.. +++ .+.+++|...+..++++++++...+.+ .+..+++.++.++..++..+...++..+-.++....
T Consensus 804 ~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~ 883 (1049)
T 3m1i_C 804 ECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERM 883 (1049)
T ss_dssp HHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999985242108999999999999999867899975999999999999999947998169999999999999998762
Q ss_pred -C-C-----HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf -2-2-----14679999986643117999872477459999999997
Q 001587 899 -E-S-----ALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIM 938 (1049)
Q Consensus 899 -~-~-----~~~~~~~~l~~L~~~l~~~~~~~~~~~~a~~~l~~l~~ 938 (1049)
+ . +..|+..+++.+...+.++. +...-+..+..+.+++.
T Consensus 884 ~~~~~~~~f~~~~~~~l~~~~~~~l~~~~-h~s~~~~~~~~l~~l~~ 929 (1049)
T 3m1i_C 884 GNVPFANEFHKNYFFIFVSETFFVLTDSD-HKSGFSKQALLLMKLIS 929 (1049)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHSTT-CGGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHH
T ss_conf 88688999999999999999999985642-75218999999999999
Done!