Query 001588
Match_columns 1049
No_of_seqs 314 out of 1714
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 04:32:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001588.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001588hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07990 NABP: Nucleic acid bi 100.0 6.4E-87 1.4E-91 740.5 22.4 377 285-698 1-385 (385)
2 KOG1488 Translational represso 100.0 4.4E-71 9.6E-76 634.9 33.4 344 677-1021 153-501 (503)
3 cd07920 Pumilio Pumilio-family 100.0 2.3E-54 5E-59 479.3 34.5 319 696-1015 3-322 (322)
4 COG5099 RNA-binding protein of 100.0 7.8E-48 1.7E-52 464.9 26.8 319 702-1021 440-763 (777)
5 KOG2049 Translational represso 100.0 7.4E-44 1.6E-48 413.5 21.2 312 697-1014 212-531 (536)
6 cd07920 Pumilio Pumilio-family 100.0 2.7E-39 5.9E-44 358.9 31.1 297 676-979 17-322 (322)
7 KOG1488 Translational represso 100.0 5.3E-40 1.2E-44 378.5 17.2 265 675-940 222-498 (503)
8 KOG2050 Puf family RNA-binding 100.0 3.4E-30 7.4E-35 295.0 27.2 300 667-1015 138-440 (652)
9 COG5099 RNA-binding protein of 100.0 2.5E-29 5.5E-34 304.7 19.8 249 780-1034 447-696 (777)
10 KOG2049 Translational represso 100.0 1.9E-27 4.2E-32 277.0 19.5 282 732-1021 211-498 (536)
11 KOG2188 Predicted RNA-binding 99.9 1.5E-25 3.3E-30 259.5 32.2 333 676-1014 64-604 (650)
12 KOG2188 Predicted RNA-binding 99.9 1.1E-21 2.5E-26 227.6 24.5 310 730-1041 91-594 (650)
13 KOG2050 Puf family RNA-binding 99.8 7.5E-19 1.6E-23 202.6 27.8 258 765-1033 155-417 (652)
14 KOG4574 RNA-binding protein (c 99.6 1.3E-15 2.7E-20 180.5 9.2 299 725-1026 533-860 (1007)
15 KOG4574 RNA-binding protein (c 99.3 8.5E-13 1.8E-17 157.0 6.0 230 798-1033 534-766 (1007)
16 PF00806 PUF: Pumilio-family R 97.8 7.9E-06 1.7E-10 63.0 1.0 29 738-766 4-32 (35)
17 PF00806 PUF: Pumilio-family R 97.6 4.5E-05 9.8E-10 58.8 2.9 33 772-804 2-34 (35)
18 smart00025 Pumilio Pumilio-lik 97.3 7E-05 1.5E-09 56.7 1.0 28 702-729 4-31 (36)
19 smart00025 Pumilio Pumilio-lik 97.2 0.00022 4.7E-09 54.0 2.7 34 736-769 2-35 (36)
20 PRK05686 fliG flagellar motor 94.9 8.1 0.00018 44.8 24.8 83 891-996 200-287 (339)
21 PRK05686 fliG flagellar motor 87.0 67 0.0015 37.4 21.6 84 714-806 82-166 (339)
22 PF04286 DUF445: Protein of un 86.7 64 0.0014 36.8 22.1 48 907-954 289-338 (367)
23 TIGR00207 fliG flagellar motor 86.4 73 0.0016 37.1 26.2 83 893-998 199-286 (338)
24 PF11573 Med23: Mediator compl 85.2 38 0.00083 45.9 19.2 287 756-1047 53-421 (1341)
25 PF10508 Proteasom_PSMB: Prote 84.6 1.1E+02 0.0023 37.6 22.8 93 679-771 4-100 (503)
26 PF08144 CPL: CPL (NUC119) dom 81.0 5.5 0.00012 41.0 7.6 72 913-984 58-134 (148)
27 PF12231 Rif1_N: Rap1-interact 76.4 1.4E+02 0.0031 35.1 18.4 23 931-953 276-298 (372)
28 KOG1062 Vesicle coat complex A 76.2 1.4E+02 0.0031 38.4 18.6 26 768-794 139-164 (866)
29 PF08144 CPL: CPL (NUC119) dom 74.1 8.6 0.00019 39.6 6.7 60 961-1023 64-134 (148)
30 COG1747 Uncharacterized N-term 72.5 87 0.0019 38.5 15.0 77 730-806 46-122 (711)
31 PRK07194 fliG flagellar motor 70.1 2.2E+02 0.0048 33.2 23.1 112 721-841 47-160 (334)
32 TIGR00207 fliG flagellar motor 68.5 2.4E+02 0.0052 33.0 23.6 23 721-743 49-71 (338)
33 KOG1059 Vesicle coat complex A 66.8 3.8E+02 0.0082 34.6 19.9 40 735-774 218-263 (877)
34 KOG2072 Translation initiation 66.4 1.5E+02 0.0033 38.3 15.9 45 816-860 175-219 (988)
35 KOG2213 Apoptosis inhibitor 5/ 65.4 3E+02 0.0066 33.0 17.8 15 704-718 85-99 (460)
36 KOG1992 Nuclear export recepto 65.3 1.3E+02 0.0029 38.8 15.1 53 859-911 702-758 (960)
37 PF05918 API5: Apoptosis inhib 64.2 1.3E+02 0.0027 37.7 14.7 108 697-806 77-200 (556)
38 COG1536 FliG Flagellar motor s 63.8 3E+02 0.0065 32.4 24.2 32 972-1003 263-294 (339)
39 KOG0166 Karyopherin (importin) 63.5 2.9E+02 0.0062 34.3 17.3 171 779-950 209-404 (514)
40 PF12231 Rif1_N: Rap1-interact 58.1 3.7E+02 0.0081 31.7 19.0 110 895-1024 178-288 (372)
41 PF12460 MMS19_C: RNAPII trans 55.7 4.2E+02 0.0092 31.5 17.7 29 785-813 117-145 (415)
42 PF09770 PAT1: Topoisomerase I 54.3 17 0.00038 46.9 5.5 93 703-795 576-694 (808)
43 KOG1248 Uncharacterized conser 53.5 5E+02 0.011 35.2 17.7 20 962-981 891-910 (1176)
44 PF01602 Adaptin_N: Adaptin N 53.4 4.7E+02 0.01 31.4 18.0 19 767-785 110-128 (526)
45 PF11510 FA_FANCE: Fanconi Ana 53.1 3.3E+02 0.0071 31.0 14.4 77 858-938 145-225 (263)
46 KOG1059 Vesicle coat complex A 51.9 6.5E+02 0.014 32.6 18.7 59 772-830 219-279 (877)
47 PF11510 FA_FANCE: Fanconi Ana 51.2 3E+02 0.0064 31.4 13.7 134 717-868 40-189 (263)
48 PTZ00429 beta-adaptin; Provisi 50.1 7.1E+02 0.015 32.5 25.8 45 890-935 231-275 (746)
49 PLN03083 E3 UFM1-protein ligas 49.9 4.8E+02 0.01 34.2 16.6 111 696-811 513-640 (803)
50 KOG1240 Protein kinase contain 49.8 5.8E+02 0.013 34.8 17.4 73 715-790 445-526 (1431)
51 KOG2171 Karyopherin (importin) 49.4 8.3E+02 0.018 33.1 22.9 73 963-1042 333-419 (1075)
52 PF11864 DUF3384: Domain of un 46.0 5.8E+02 0.013 31.0 16.3 38 775-812 238-277 (464)
53 PF01603 B56: Protein phosphat 42.9 6.6E+02 0.014 30.1 15.9 82 932-1020 277-366 (409)
54 PF09770 PAT1: Topoisomerase I 41.2 35 0.00076 44.2 5.3 41 739-779 576-616 (808)
55 KOG0213 Splicing factor 3b, su 40.8 9.7E+02 0.021 31.4 17.6 39 720-758 383-425 (1172)
56 PF12348 CLASP_N: CLASP N term 40.2 2.1E+02 0.0045 30.6 10.2 175 753-949 31-227 (228)
57 PF10521 DUF2454: Protein of u 36.0 4.2E+02 0.009 30.0 12.2 82 723-817 107-203 (282)
58 PF05918 API5: Apoptosis inhib 35.8 3E+02 0.0064 34.6 11.6 36 980-1015 234-269 (556)
59 KOG4368 Predicted RNA binding 35.5 3.5E+02 0.0075 33.9 11.7 27 896-922 165-191 (757)
60 PF14838 INTS5_C: Integrator c 35.1 1.1E+03 0.024 30.5 20.1 62 708-781 111-188 (696)
61 COG1536 FliG Flagellar motor s 34.9 8.2E+02 0.018 28.9 21.5 59 930-996 263-321 (339)
62 KOG2280 Vacuolar assembly/sort 34.9 1.2E+03 0.025 30.6 17.0 61 774-834 538-604 (829)
63 cd03567 VHS_GGA VHS domain fam 34.9 5.2E+02 0.011 26.5 11.7 62 930-1005 58-121 (139)
64 PF01603 B56: Protein phosphat 34.5 6.9E+02 0.015 29.9 14.3 47 826-873 280-326 (409)
65 PF14666 RICTOR_M: Rapamycin-i 32.8 1.5E+02 0.0033 32.8 7.8 132 857-998 84-223 (226)
66 PF03378 CAS_CSE1: CAS/CSE pro 32.4 7.5E+02 0.016 30.0 14.2 15 854-868 217-231 (435)
67 PF02854 MIF4G: MIF4G domain; 32.1 2.4E+02 0.0052 28.9 8.9 16 782-797 69-84 (209)
68 PRK07194 fliG flagellar motor 31.9 8.8E+02 0.019 28.3 17.9 83 716-807 79-162 (334)
69 KOG4368 Predicted RNA binding 30.6 8E+02 0.017 31.0 13.6 10 860-869 166-175 (757)
70 KOG2344 Exocyst component prot 30.3 1.1E+03 0.024 30.2 15.5 83 962-1048 460-557 (623)
71 TIGR00400 mgtE Mg2+ transporte 30.2 2.8E+02 0.0061 33.5 10.2 14 788-801 106-119 (449)
72 PF10521 DUF2454: Protein of u 29.8 8.6E+02 0.019 27.5 14.4 53 784-836 95-154 (282)
73 COG4399 Uncharacterized protei 29.3 1E+03 0.022 28.3 16.6 24 880-903 216-239 (376)
74 cd03569 VHS_Hrs_Vps27p VHS dom 28.9 6.4E+02 0.014 25.8 13.6 75 930-1022 61-136 (142)
75 COG1747 Uncharacterized N-term 28.8 1.3E+03 0.027 29.1 19.9 65 765-829 45-109 (711)
76 PRK07003 DNA polymerase III su 28.7 1.3E+03 0.028 30.5 15.7 12 749-760 159-170 (830)
77 cd07439 FANCE_c-term Fanconi a 28.6 9.1E+02 0.02 27.4 16.4 69 857-926 135-206 (254)
78 COG2733 Predicted membrane pro 27.5 1.2E+03 0.025 28.3 15.1 56 830-889 140-196 (415)
79 KOG2160 Armadillo/beta-catenin 26.5 1.1E+03 0.025 27.8 18.2 42 724-766 95-142 (342)
80 KOG1992 Nuclear export recepto 25.9 1.7E+03 0.036 29.6 21.4 224 761-986 492-755 (960)
81 PF08568 Kinetochor_Ybp2: Unch 25.9 1.1E+03 0.024 29.9 14.6 17 778-794 358-374 (633)
82 KOG2073 SAP family cell cycle 25.7 1.5E+03 0.033 30.0 15.8 169 810-985 180-380 (838)
83 KOG1058 Vesicle coat complex C 25.5 1.6E+03 0.036 29.4 20.3 19 988-1006 431-449 (948)
84 PLN03200 cellulose synthase-in 25.5 2.4E+03 0.052 31.3 26.9 22 929-950 609-630 (2102)
85 KOG2072 Translation initiation 25.4 1.7E+03 0.037 29.5 20.6 44 744-787 175-218 (988)
86 PHA03100 ankyrin repeat protei 25.0 1E+03 0.022 28.1 13.7 27 816-842 245-271 (480)
87 TIGR00400 mgtE Mg2+ transporte 24.9 2.9E+02 0.0062 33.4 9.0 82 715-808 21-102 (449)
88 COG2733 Predicted membrane pro 24.6 1.3E+03 0.028 27.9 17.5 34 984-1017 335-371 (415)
89 PF03448 MgtE_N: MgtE intracel 24.4 1.3E+02 0.0028 28.0 4.9 85 719-803 8-92 (102)
90 PF14666 RICTOR_M: Rapamycin-i 24.3 2.7E+02 0.0058 30.9 7.8 24 840-863 139-162 (226)
91 PF09742 Dymeclin: Dyggve-Melc 24.2 1.6E+03 0.035 28.8 15.9 59 990-1049 611-674 (678)
92 KOG2956 CLIP-associating prote 23.9 1.2E+03 0.026 28.9 13.4 12 993-1004 482-493 (516)
93 PF14911 MMS22L_C: S-phase gen 23.8 1.3E+03 0.028 27.6 13.9 86 731-816 169-265 (373)
94 KOG1070 rRNA processing protei 23.8 2.2E+03 0.048 30.3 18.3 38 702-739 1446-1487(1710)
95 PF01153 Glypican: Glypican; 23.3 1.2E+03 0.025 29.4 13.9 15 926-940 260-274 (557)
96 PLN03218 maturation of RBCL 1; 23.1 2E+03 0.044 29.6 19.9 21 933-953 690-710 (1060)
97 PRK07003 DNA polymerase III su 22.9 5.3E+02 0.012 33.8 10.9 13 1021-1033 341-353 (830)
98 PF04078 Rcd1: Cell differenti 22.2 3.2E+02 0.0068 31.1 7.9 98 824-938 119-230 (262)
99 PF07176 DUF1400: Alpha/beta h 22.0 3.4E+02 0.0074 27.3 7.5 80 961-1040 19-108 (127)
100 KOG1824 TATA-binding protein-i 22.0 2E+03 0.043 29.5 15.3 63 890-952 206-280 (1233)
101 KOG3821 Heparin sulfate cell s 21.8 1.7E+03 0.036 28.1 19.5 15 926-940 268-282 (563)
102 PLN03083 E3 UFM1-protein ligas 21.8 1.9E+03 0.042 28.9 20.8 47 752-802 532-578 (803)
103 PF10508 Proteasom_PSMB: Prote 21.5 1.6E+03 0.034 27.7 27.3 113 901-1024 364-489 (503)
104 KOG0889 Histone acetyltransfer 21.5 2.1E+03 0.045 33.4 16.8 38 890-927 2041-2078(3550)
105 PF05794 Tcp11: T-complex prot 21.4 3E+02 0.0065 32.9 8.2 163 734-913 22-185 (441)
106 COG4399 Uncharacterized protei 21.4 1.4E+03 0.031 27.2 16.3 34 886-919 235-268 (376)
107 PTZ00429 beta-adaptin; Provisi 21.3 1.9E+03 0.042 28.7 22.7 37 917-953 353-392 (746)
108 KOG3759 Uncharacterized RUN do 21.2 1.4E+03 0.029 28.3 12.9 59 721-782 97-164 (621)
109 PRK07764 DNA polymerase III su 21.2 1.9E+03 0.042 28.9 15.8 212 793-1015 129-358 (824)
110 PRK15362 pathogenicity island 20.4 1E+03 0.022 29.2 11.8 85 689-780 211-295 (473)
111 KOG1070 rRNA processing protei 20.1 9.6E+02 0.021 33.5 12.5 52 687-738 1451-1505(1710)
No 1
>PF07990 NABP: Nucleic acid binding protein NABP; InterPro: IPR012940 This domain occurs in some putative nucleic acid binding proteins. One of these proteins has been partially characterised [] and contains two putative phosphorylation sites and a possible dimerisation / leucine zipper domain.
Probab=100.00 E-value=6.4e-87 Score=740.54 Aligned_cols=377 Identities=58% Similarity=0.962 Sum_probs=363.0
Q ss_pred cCCCCCCCCCCccccccCCcCCcCCCCCCCCCCCCCCChHHHHHHhcCCCCCCCCCCcccccccchhhhchhhhcc-cCC
Q 001588 285 RAPSPRIPTAGVGRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDDRHS-LFN 363 (1049)
Q Consensus 285 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 363 (1049)
|+|||||||||+ |+.+.|||+++|+++||+++|+++|+|||+|||||||||+++++++|+|+|+|+|||||||++ ||+
T Consensus 1 R~PSp~lpPIG~-Rv~s~eKk~~~g~~sfn~~SS~~~e~aDlvAALSGLNLS~~~~~~ee~~~qSqlqqdvdnqq~~lf~ 79 (385)
T PF07990_consen 1 RAPSPCLPPIGV-RVGSVEKKNNGGSSSFNGVSSGINESADLVAALSGLNLSGNRAADEENHMQSQLQQDVDNQQDFLFN 79 (385)
T ss_pred CCCCCCCCCccc-cccchhcccccCCcccccccCCCCcHHHHHHHHhcCCcCcCccccccccchHHHHHHHHHhhhhhhc
Confidence 899999999999 999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCCCccccccCccccCccccccccccccCCCCCCCCCCCCCCCCcccccccccccccccccCCCCccCCCCCCCccCCCC
Q 001588 364 LQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSNSYLKGPCTPTLNGGG 443 (1049)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (1049)
+|++|+|.+||.|+++++++|+++| ++++..+.+.++|+|++.++.+++++
T Consensus 80 ~q~~q~~~~Qq~~~~~se~~~l~~~-----------------------------e~~~a~~~~~~s~~~~~~~s~~~~~g 130 (385)
T PF07990_consen 80 VQGGQNQGNQQSYMKKSESGHLNAP-----------------------------ELQKAAFPSGNSYFKNSNASKLSGGG 130 (385)
T ss_pred CccchhhhhhHHHhhccchhhcccc-----------------------------ccccccCCCccccccCCCcccccCCC
Confidence 9999999999999999999999765 46677788899999999999999999
Q ss_pred CCCCCCccCCCCCCCCCCCCcCcccCCCCCCCCcCCCCCCCCCCcchhhhHHhhhhcCCCCCccccccCCCCchhhhhhh
Q 001588 444 NSPSHHQVMGNMNSAFSNFSLNGYSMNPSSPSMMGSPIGSGNLPPLYENAAAASAMAGNGLDARTLASLGLGPNVMAAAA 523 (1049)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1049)
..+..||+++.++..+ +||++||++|+||.+++++|++|+|||+++++++++++++|+|.+| +++.++++...+
T Consensus 131 ~~~~~~q~~~~~n~~~-----~gy~~n~~~~s~~~~~~~~gn~p~~fd~~~~~s~~~~~~~~s~~~g-~~~~s~~~~~~~ 204 (385)
T PF07990_consen 131 GSPFPYQNSDNPNSSF-----GGYALNPALPSMMASQLNNGNIPPLFDNSAAASALASPGMDSRSLG-GGLDSGGNQGAS 204 (385)
T ss_pred CCCCcccCCCcccccc-----cccccCccchhhhhccccCCCCCccccccccchhhccCCCcccccC-Cccccccccccc
Confidence 9999999988877766 8999999999999999999999999999999999999999999999 889988877788
Q ss_pred hhhhhccccCCCCCCCCCCCCCChHHHhhhccchHHHHHhhhcCCCCcc---CCCCccchhhhHHHhhhccccccccccC
Q 001588 524 ELQSMNRLGNHTAGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMD---IGNSYMDLLGLQKAYLGALLSPQKSQYG 600 (1049)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (1049)
|+++++|+|||+++.++|+||+||+|+||||+++|++++++++.||+++ +|++++|+++.||+||++||++||+|||
T Consensus 205 d~~~l~r~gnq~~g~~lq~~~~DP~Y~Qylq~~~~aa~~~a~~~dP~~~R~~~G~s~~dl~~~qKayl~~lL~~QK~Qy~ 284 (385)
T PF07990_consen 205 DGQNLNRFGNQVAGSALQSPFVDPLYLQYLQAPEYAAQQAAAQNDPSVDRNYMGSSYMDLLGLQKAYLEALLAQQKSQYG 284 (385)
T ss_pred chhhhhhhcccccCcccCCCCCCchHHHHhccccchhhhhhccCCcccccCCcCccccchHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999997799999999999999999999999999999999997 9999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCcCCCCCCCccCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcCCCCCC
Q 001588 601 VPYLNKSGSLNNNLYGNPAFGLGMSYPGGP----LLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGSLD 676 (1049)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~~p~~~~~~~~r~~s~~r~~~gg~~~~w~~~~g~~~~ 676 (1049)
+|+ .|+|+++++|||+|.||++|+|||+| ++|.+|+|+|+|+++++|++||+++|||.+||.+++||.|.+++||
T Consensus 285 ~P~-~~~~~~n~~y~gnp~~G~gm~Y~gsplaspvlPsspvG~gsp~r~~er~~R~~s~mRn~~GG~~GsW~~d~g~~~d 363 (385)
T PF07990_consen 285 VPL-KKSGSMNHGYYGNPSYGLGMPYPGSPLASPVLPSSPVGPGSPLRHNERNMRFPSGMRNSSGGSMGSWHSDAGGNMD 363 (385)
T ss_pred Ccc-ccCCCCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCcCCccccccCccccccccccccccccccccccc
Confidence 999 88888999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHhhhcCccccchHH
Q 001588 677 ESFASSLLDEFKSNKTKCFELS 698 (1049)
Q Consensus 677 ~~~~s~LLeEf~sneer~~~Ls 698 (1049)
+.|.++||||||++|.|+|+|+
T Consensus 364 ~~~~sSlLEEFKsNKtr~FELS 385 (385)
T PF07990_consen 364 ENFASSLLEEFKSNKTRSFELS 385 (385)
T ss_pred ccchhHHHHHHhcCCccceecC
Confidence 9999999999999999999874
No 2
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.4e-71 Score=634.89 Aligned_cols=344 Identities=58% Similarity=0.950 Sum_probs=328.9
Q ss_pred hhhhHHHHHhhhcC-ccccchHHHHHHHHHHHhcCCCcCHHHHHhhhcCCH-HHHHHHHHHHHHhHHhhhccccccchhh
Q 001588 677 ESFASSLLDEFKSN-KTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATT-EEKNMVFQEIMPQALSLMTDVFGNYVIQ 754 (1049)
Q Consensus 677 ~~~~s~LLeEf~sn-eer~~~LseI~GkivELa~Dq~GSRvLQklLe~aS~-Eer~~IfeEI~p~~leL~tD~fGNhVLQ 754 (1049)
.+..+.+++.+.+. ..+.+.+.++.|++++|++||+||||||++|+.++. +++..||++|.+.+.+||+|.|||||||
T Consensus 153 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~f~~Dq~GsrfiQqkl~~~~~~~ek~~if~ei~~~~~~L~~dvFGNyvIQ 232 (503)
T KOG1488|consen 153 STGPSFLLDPFRSNSLSKTLELVDIPGHLVEFAKDQHGSRFIQQKLETASDNEEKQAVFDEILPPALELMTDVFGNYVIQ 232 (503)
T ss_pred CCCCCccccccccccccccccccccCCCceeecCCcccchHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 33456678877777 777888999999999999999999999999999998 9999999999999999999999999999
Q ss_pred hhcccCCHHHHHHHHHHHHHHHHHhHhcccccHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHhhCCh
Q 001588 755 KFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPE 834 (1049)
Q Consensus 755 KLLe~gs~eqr~~Li~~Lkg~I~eLs~d~yGSrVLQkLLe~~s~eqr~~Lv~EL~~~I~eLvkDqnGNhVIQKlLE~lp~ 834 (1049)
|+||++++++++.|...+++++..||.|+||||||||+|++.+.+++.+|++||.+++.+|++|+|||||||||||+++.
T Consensus 233 kffE~gt~~q~~~l~~~~~g~v~~Lsld~ygCRVIQkale~id~~~~~~Li~ELd~~vl~~v~DQngnHViQK~ie~~p~ 312 (503)
T KOG1488|consen 233 KFFEHGTEDQRNLLHSQIKGHVLELSLDMYGCRVIQKALEKVDVSLQIQLIDELDGHLLKCVKDQNGNHVIQKCIETLPP 312 (503)
T ss_pred hhhccCCHHHHHHHHHHHHhhhhhhhcccccchhHHHHHHhcCHHHHHHHHHHHHhhHHHHHhhcccceehhhhhhccCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh--hHHHhhcCCCCchHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHhhCChhhHHH
Q 001588 835 DAIQFIVLTFYD--QVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSA 912 (1049)
Q Consensus 835 e~~e~Iis~L~g--~iveLsthkyGS~VIQklLe~~~d~~~r~~LIeeI~~~l~~La~DqyGNyVVQ~LLe~~~~~eR~~ 912 (1049)
+.++||++.|.+ ++..+++|+|||+|||++||+|..++++ .++++|..++..|+.|+||||||||+|+++.++++..
T Consensus 313 ~~~~Fiv~~f~~~~~~~~ls~~~YGCRVIQr~lE~c~~~~~~-~i~~ei~~~~~~L~~dQygNYVIQHVie~g~~~~~~~ 391 (503)
T KOG1488|consen 313 DAWQFIVDFFSGDDNLLELSTHKYGCRVIQRILEHCSEDQKQ-PLMEEIIRNCDQLAQDQYGNYVIQHVIEHGSPYRDTI 391 (503)
T ss_pred HHHHHHHHHhcCCCceeEeeccCcccHHHHHHhhcCChHhhh-HHHHHHHHHHHHHHhhhhhhHHHHHHHhcCChhhhhh
Confidence 999999999999 9999999999999999999999876554 4999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCc-hhHHHhhcCCchHHHHHHHHhcCChHHHHHH
Q 001588 913 IIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEEN-EPLQVMMKDQFANYVVQKVLETCDDQQLELI 991 (1049)
Q Consensus 913 IIe~L~g~Iv~LS~~K~GSrVVEKcL~~as~k~Rk~IIkELlg~~~~~-e~L~~La~D~~GNyVVQklLd~~dd~qRe~I 991 (1049)
|+++|++++++|+++||+|+|||+||.++...+|..|++|+++..++. +.|..||+|+||||||||+|++|++.+|++|
T Consensus 392 I~~~l~~~ll~~Sq~KfASnVVEk~~~~a~~~~r~~i~~Ei~~~~~~~~~~L~~mmkdQYgNYVVQkmi~~~~~~q~~~i 471 (503)
T KOG1488|consen 392 IIKCLLGNLLSMSQHKFASNVVEKAFLFAPPLLRALIMNEIFPGYVEHPDALDIMMKDQYGNYVVQKMIDICGPEQRELI 471 (503)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcCCccCCccHHHHHHHHhhhhhHHHHHHHhcCHHHHHHH
Confidence 999999999999999999999999999999999999999999876654 7899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHc
Q 001588 992 LNRIKVHLNALKKYTYGKHIVARVEKLVAA 1021 (1049)
Q Consensus 992 LseLk~~L~~L~~~~yGk~IV~klEklv~~ 1021 (1049)
+.+|++|+..|++++|||||+++|||+...
T Consensus 472 ~~rI~~h~~~Lrk~syGKhIia~lek~~~~ 501 (503)
T KOG1488|consen 472 KSRVKPHASRLRKFSYGKHIIAKLEKLRSK 501 (503)
T ss_pred HHHHHHHHHHHccCccHHHHHHHHHHhccc
Confidence 999999999999999999999999998654
No 3
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=100.00 E-value=2.3e-54 Score=479.28 Aligned_cols=319 Identities=55% Similarity=0.924 Sum_probs=305.8
Q ss_pred hHHHHH-HHHHHHhcCCCcCHHHHHhhhcCCHHHHHHHHHHHHHhHHhhhccccccchhhhhcccCCHHHHHHHHHHHHH
Q 001588 696 ELSEIA-GHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTG 774 (1049)
Q Consensus 696 ~LseI~-GkivELa~Dq~GSRvLQklLe~aS~Eer~~IfeEI~p~~leL~tD~fGNhVLQKLLe~gs~eqr~~Li~~Lkg 774 (1049)
.++++. |+++++|+|++|||+||++|+.++.+++++||+++.+++.+||.|+|||||||++|++++++++..|++.+.+
T Consensus 3 ~~~~~~~~~~~~l~~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~ 82 (322)
T cd07920 3 TLQDIKAGHIVEFAKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILG 82 (322)
T ss_pred CHHhccCcchhhccCCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 466677 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhcccccHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHhhCChhHHHHHHHHHHhhHHHhhcC
Q 001588 775 HVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTH 854 (1049)
Q Consensus 775 ~I~eLs~d~yGSrVLQkLLe~~s~eqr~~Lv~EL~~~I~eLvkDqnGNhVIQKlLE~lp~e~~e~Iis~L~g~iveLsth 854 (1049)
++.+|+.|+|||||||++|+.++.+++..++++|.+++.+|++|++||||+|+++++++++.++.|++.+.+++.++++|
T Consensus 83 ~~~~l~~~~~g~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~ 162 (322)
T cd07920 83 HVVRLSLDMYGCRVIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTH 162 (322)
T ss_pred HHHHHcccchhHHHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCchHHHHH
Q 001588 855 PYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVI 934 (1049)
Q Consensus 855 kyGS~VIQklLe~~~d~~~r~~LIeeI~~~l~~La~DqyGNyVVQ~LLe~~~~~eR~~IIe~L~g~Iv~LS~~K~GSrVV 934 (1049)
++||+|+|++++.+. ++.+..+++++.+++..|+.|+|||||||++|+.+.++.++.|++.+.+++.+|+++||||+||
T Consensus 163 ~~G~~vvq~~l~~~~-~~~~~~l~~~l~~~~~~L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vv 241 (322)
T cd07920 163 PYGCRVIQRCLEHCS-EEQREPLLEEILEHALELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVV 241 (322)
T ss_pred ccccHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHH
Confidence 999999999999885 5667789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCchhHHHhhcCCchHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCchhHHHH
Q 001588 935 EKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVAR 1014 (1049)
Q Consensus 935 EKcL~~as~k~Rk~IIkELlg~~~~~e~L~~La~D~~GNyVVQklLd~~dd~qRe~ILseLk~~L~~L~~~~yGk~IV~k 1014 (1049)
|+||+.+++++|+.|+++++....+++.+.+|++|+|||||||++|+.+++..++.|++.|++++.+|+.++||++|+++
T Consensus 242 e~~l~~~~~~~~~~ii~~l~~~~~~~~~l~~l~~d~~Gn~Viq~~l~~~~~~~~~~i~~~l~~~~~~L~~~~~G~~v~~~ 321 (322)
T cd07920 242 EKCLKHASKEERELIIDEILASGNETSALDTLMKDQYGNYVIQTALDVAKEEQRELLVEAIRPHLPSLRKSPYGKHILAK 321 (322)
T ss_pred HHHHHHCCHHHHHHHHHHHhcCCCchhHHHHHhCCCcccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHh
Confidence 99999999999999999999653224689999999999999999999999999999999999999999999999999865
Q ss_pred H
Q 001588 1015 V 1015 (1049)
Q Consensus 1015 l 1015 (1049)
+
T Consensus 322 ~ 322 (322)
T cd07920 322 L 322 (322)
T ss_pred C
Confidence 3
No 4
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.8e-48 Score=464.88 Aligned_cols=319 Identities=41% Similarity=0.682 Sum_probs=299.4
Q ss_pred HHHHHH-hcCCCcCHHHHHhhhcCCHHHHHHHHHHHHHhHHhhhccccccchhhhhcccCCHHHHHHHHHHHHHHHHHhH
Q 001588 702 GHVVEF-SADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLS 780 (1049)
Q Consensus 702 GkivEL-a~Dq~GSRvLQklLe~aS~Eer~~IfeEI~p~~leL~tD~fGNhVLQKLLe~gs~eqr~~Li~~Lkg~I~eLs 780 (1049)
+..+++ ++||+|||+||++|+.-+.++++.||.++.+...+||.|.||||||||+||+++++++..++..+.+++..|+
T Consensus 440 ~~~~~~~~~Dq~g~r~LQk~Lds~s~~~~~~~~~e~~d~~~eLs~d~fGNyliQK~fe~~s~~q~~~ml~~~~~~~~~ls 519 (777)
T COG5099 440 GPSIIVSCKDQHGSRFLQKLLDSNSSPEIEVIFNEILDQLVELSSDYFGNYLIQKLFEYGSEIQKSIMLSKSSKHLVSLS 519 (777)
T ss_pred cCccccccCCcHHHHHHHHHhcccchHHHHHHHHHHhhhhHHHHHhhhcchhhHHHHHhccHHHHHHHHHHhhhhHHHhh
Confidence 333444 5999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHhhcCHHHHH-HHHHHHHHHHHHHhccCCCchHHHHHHhhCChhHHHHHHHHHHhhHHHhhcCCCCch
Q 001588 781 LQMYGCRVIQKAIEVVELDQQT-QMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCR 859 (1049)
Q Consensus 781 ~d~yGSrVLQkLLe~~s~eqr~-~Lv~EL~~~I~eLvkDqnGNhVIQKlLE~lp~e~~e~Iis~L~g~iveLsthkyGS~ 859 (1049)
.|+|||||+||+|+++..+.+. .++++|.+.+..|++|++||||||||+++++.+..++|++.+.+++.++++|+|||+
T Consensus 520 ~~~~Gtrv~QK~id~~~t~~qi~~lv~~l~~~~~~li~dqngNHviqKci~~~~~~~~~fif~~~~~~~~~is~~r~Gs~ 599 (777)
T COG5099 520 VHKYGTRVLQKAIDIVSTDIQISLLVEELRPYCLQLIKDQNGNHVIQKCIEKFNKEKNQFIFDSINENLYDLSTHRYGSR 599 (777)
T ss_pred ccccccHHHHHHHhccCchhhHHHHHHHhhhhhHHHHHhccCCHHHHHHHHhcCccccchHHHHHHhhhHhhhccccccH
Confidence 9999999999999999988887 889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHhhCChhhHHHHHHHHHH-HHHHHhcCchHHHHHHHHH
Q 001588 860 VIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTG-QIVQMSQQKFASNVIEKCL 938 (1049)
Q Consensus 860 VIQklLe~~~d~~~r~~LIeeI~~~l~~La~DqyGNyVVQ~LLe~~~~~eR~~IIe~L~g-~Iv~LS~~K~GSrVVEKcL 938 (1049)
|||+|+|+|....+ ..++++|......|++|+||||||||+|+.+.+..++.|+..+.. +++++++|||||+||||||
T Consensus 600 vvq~~le~~~~~~~-~~~~~~Ii~~~~~L~~dq~GNyvvq~il~~g~~~~k~~i~~~~l~~~v~elS~~kfaSnvVeK~i 678 (777)
T COG5099 600 VVQRCLENCNSEDK-ENLVEEIISNSKYLSQDQYGNYVVQHILDNGAEPNKERIIIKLLSKRVVELSTHKFASNVVEKCI 678 (777)
T ss_pred HHHHHHHhccHhHH-HHHHHHHHHHHHhhccCCcchhhhhHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999976554 679999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred hcCCHHH-HHHHHHHHhcCCCCch-hHHHhhcCCchHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCchhHHHHHH
Q 001588 939 SFGTPAE-RQALVNEMLGSIEENE-PLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVE 1016 (1049)
Q Consensus 939 ~~as~k~-Rk~IIkELlg~~~~~e-~L~~La~D~~GNyVVQklLd~~dd~qRe~ILseLk~~L~~L~~~~yGk~IV~klE 1016 (1049)
.++...+ |++|+.++.....+.+ .|..|+.|+|||||+|++++.....+|..+.+.++.++..|...+||+||.+.||
T Consensus 679 ~~~~~~~~~~ril~~~~~~~~~~~~~l~~i~~d~y~Nyv~q~~~~~s~~~~~~l~~~~i~~~~~~l~~s~~g~~i~~~le 758 (777)
T COG5099 679 KYASDSFKRSRILNELTNRGIEKPGFLMLILDDQYANYVIQYLLDVSPEIQRSLLARAIKKVIPSLKKSMYGQHILALLE 758 (777)
T ss_pred hcCCcchHHHHHHHHHhcccccCChHHHHHHHhhhcchHHHHHHhhCchhhHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 9998877 5999999986322233 4899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc
Q 001588 1017 KLVAA 1021 (1049)
Q Consensus 1017 klv~~ 1021 (1049)
+....
T Consensus 759 ~~~~~ 763 (777)
T COG5099 759 KVGSS 763 (777)
T ss_pred HHhcc
Confidence 98653
No 5
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.4e-44 Score=413.46 Aligned_cols=312 Identities=29% Similarity=0.521 Sum_probs=290.2
Q ss_pred HHHHHHHHHHHhcCCCcCHHHHHhhhcCCHHHHHHHHHHHHHhHHhhhccccccchhhhhcccCCHHHHHHHHHHHHH--
Q 001588 697 LSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTG-- 774 (1049)
Q Consensus 697 LseI~GkivELa~Dq~GSRvLQklLe~aS~Eer~~IfeEI~p~~leL~tD~fGNhVLQKLLe~gs~eqr~~Li~~Lkg-- 774 (1049)
+.++.+.+.-+|+|++|||++|+.+..++......||.++..++.+||.|+||+++|||+++.|+++++..|+..+..
T Consensus 212 ~~~~~~~~~~~akd~~gc~~lq~~~~~~~~~~~~~if~~~~~~~~~Lm~d~fGny~vqkl~~~~~~eq~~~i~~~lts~p 291 (536)
T KOG2049|consen 212 MVEIQGSINLIAKDQHGCRLLQKLLSEGTKVSILKIFLETIQDVPELMEDPFGNYLVQKLLEVCDEEQLTKIVSLLTSDP 291 (536)
T ss_pred hhccchhhhhhcccccCCcccccCcccCccccHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhCHHHHHHHHHHHhcCc
Confidence 466778999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred -HHHHhHhcccccHHHHHHHhhcCHHHHH-HHHHHHHHHHHHHhccCCCchHHHHHHhhCChhHHHHHHHHHHhhHHHhh
Q 001588 775 -HVLTLSLQMYGCRVIQKAIEVVELDQQT-QMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLS 852 (1049)
Q Consensus 775 -~I~eLs~d~yGSrVLQkLLe~~s~eqr~-~Lv~EL~~~I~eLvkDqnGNhVIQKlLE~lp~e~~e~Iis~L~g~iveLs 852 (1049)
.|..++.++||+|+||++++.....++. .++..|...+..|++|.||+||||+||++++++..+++++.+...+.+++
T Consensus 292 ~~fv~i~~N~~GTr~iQkl~~~~~~~dqI~~~~~ai~~~fl~L~~D~~g~~Viq~cl~~f~~~~~~~l~e~i~~~c~~iA 371 (536)
T KOG2049|consen 292 RLFVEICTNMYGTRAVQKLLGKSDSVDQISLFLDAIKPNFLHLIKDKNGNHVIQRCLRVFSKEKNEFLYEAILRYCLDLA 371 (536)
T ss_pred cceeEeeecCchhHHHHHHHhccccHHHHHHHHHHHHhhhHHhhhhcchhHHHHHHHHhcCchhhhHHHHHHHHHHHHHH
Confidence 6999999999999999999988755544 45577999999999999999999999999999999999999999999999
Q ss_pred cCCCCchHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCchHHH
Q 001588 853 THPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASN 932 (1049)
Q Consensus 853 thkyGS~VIQklLe~~~d~~~r~~LIeeI~~~l~~La~DqyGNyVVQ~LLe~~~~~eR~~IIe~L~g~Iv~LS~~K~GSr 932 (1049)
+|++||+|+|+||....+ .+++.++++|..+...|++|+|||||||++|+.-.+.....|+++|.+++++||.+||||+
T Consensus 372 ~~~hGCcvLq~cl~~~~~-~~rd~Lv~~i~~naL~Ls~d~~GNyvVQyvl~L~~~~~t~~i~~~L~g~~veLS~qKfgS~ 450 (536)
T KOG2049|consen 372 TDQHGCCVLQKCLDYSRG-EQRDRLVEEISRNALLLSNDPYGNYVVQYVLELNDPSCTVNIAEKLRGHYVELSFQKFGSH 450 (536)
T ss_pred HhccccchhHHHhcchhH-HHHHHHHHHHHHHhHhhhcCccccchhhhhhhhcCcchHHHHHHhhhhHHHHHHHHhhccH
Confidence 999999999999999755 6788899999999999999999999999999998888899999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCchhHHHhhcCCchHHHHHHHHhcCCh----HHHHHHHHHHHHHHHHHhhcCCc
Q 001588 933 VIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDD----QQLELILNRIKVHLNALKKYTYG 1008 (1049)
Q Consensus 933 VVEKcL~~as~k~Rk~IIkELlg~~~~~e~L~~La~D~~GNyVVQklLd~~dd----~qRe~ILseLk~~L~~L~~~~yG 1008 (1049)
||||||+.+... +..||.|+++. +.+..|+.|+|||||||++|....+ ..+..++..+++.+..|+..++|
T Consensus 451 vVEk~L~~~~~~-~~~iV~ell~~----~~~~~Ll~D~ygNyViq~AL~vtk~~~~~~~~~~lv~~~~~~~~~lr~~p~~ 525 (536)
T KOG2049|consen 451 VVEKLLKVRESS-RAQIVLELLSC----DELDRLLRDPYGNYVIQTALRVTKVKLREDLFGLLVQKLMPRIRLLRNNPGG 525 (536)
T ss_pred HHHHHHhcCcch-hhHHHHHHHcc----ccHHHHhhCccchHHHHHHHHHhhhcccchhhHHHHHHHhhhhHHhhcCccc
Confidence 999999987543 47899999965 5799999999999999999999986 66789999999999999999999
Q ss_pred hhHHHH
Q 001588 1009 KHIVAR 1014 (1049)
Q Consensus 1009 k~IV~k 1014 (1049)
+++..+
T Consensus 526 ~~~~~~ 531 (536)
T KOG2049|consen 526 NIALIK 531 (536)
T ss_pred ceeeeh
Confidence 988543
No 6
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=100.00 E-value=2.7e-39 Score=358.86 Aligned_cols=297 Identities=25% Similarity=0.431 Sum_probs=279.6
Q ss_pred ChhhhHHHHHhh---hcCccccchHHHHHHHHHHHhcCCCcCHHHHHhhhcCCHHHHHHHHHHHHHhHHhhhccccccch
Q 001588 676 DESFASSLLDEF---KSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYV 752 (1049)
Q Consensus 676 ~~~~~s~LLeEf---~sneer~~~LseI~GkivELa~Dq~GSRvLQklLe~aS~Eer~~IfeEI~p~~leL~tD~fGNhV 752 (1049)
.+...+.+++.+ .+.+++...+.++.+++++++.|++|++++|++|+.++++++..|++++.+++..|++|+||+||
T Consensus 17 ~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~v 96 (322)
T cd07920 17 KDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRV 96 (322)
T ss_pred CCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHHH
Confidence 445566666633 34677788899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCHHHHHHHHHHHHHHHHHhHhcccccHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHhhC
Q 001588 753 IQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECV 832 (1049)
Q Consensus 753 LQKLLe~gs~eqr~~Li~~Lkg~I~eLs~d~yGSrVLQkLLe~~s~eqr~~Lv~EL~~~I~eLvkDqnGNhVIQKlLE~l 832 (1049)
|||+|++++++++..|++++.+++.+|+.|.||++|||++++.++.+++..|+++|.+++..++.|++|++|+|+||+.+
T Consensus 97 lqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G~~vvq~~l~~~ 176 (322)
T cd07920 97 IQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCRVIQRCLEHC 176 (322)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhhHHHhhcCCCCchHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHhhCChhhHHH
Q 001588 833 PEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSA 912 (1049)
Q Consensus 833 p~e~~e~Iis~L~g~iveLsthkyGS~VIQklLe~~~d~~~r~~LIeeI~~~l~~La~DqyGNyVVQ~LLe~~~~~eR~~ 912 (1049)
+++.++.|++.+.+++..|+.+++|++|||++++... +..+..+++.+.+++..|+.++||++||+++++.+.++.++.
T Consensus 177 ~~~~~~~l~~~l~~~~~~L~~d~~Gn~vvq~~l~~~~-~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~~~~~~~~~ 255 (322)
T cd07920 177 SEEQREPLLEEILEHALELVQDQFGNYVVQHVLELGD-PDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKHASKEEREL 255 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHCCHHHHHH
Confidence 9999999999999999999999999999999999975 567788999999999999999999999999999999999999
Q ss_pred HHHHHH------HHHHHHhcCchHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCchhHHHhhcCCchHHHHHHH
Q 001588 913 IIKKLT------GQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKV 979 (1049)
Q Consensus 913 IIe~L~------g~Iv~LS~~K~GSrVVEKcL~~as~k~Rk~IIkELlg~~~~~e~L~~La~D~~GNyVVQkl 979 (1049)
|+++|. +++.+|++++||++||+++|..+++..++.|+..+. +++..|+.++||+.||.++
T Consensus 256 ii~~l~~~~~~~~~l~~l~~d~~Gn~Viq~~l~~~~~~~~~~i~~~l~------~~~~~L~~~~~G~~v~~~~ 322 (322)
T cd07920 256 IIDEILASGNETSALDTLMKDQYGNYVIQTALDVAKEEQRELLVEAIR------PHLPSLRKSPYGKHILAKL 322 (322)
T ss_pred HHHHHhcCCCchhHHHHHhCCCcccHHHHHHHHhCCHHHHHHHHHHHH------HHHHHHcCCCcHHHHHHhC
Confidence 999996 489999999999999999999999999999999997 6899999999999999874
No 7
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.3e-40 Score=378.49 Aligned_cols=265 Identities=28% Similarity=0.458 Sum_probs=247.3
Q ss_pred CChhhhHHHHH---hhhcCccccchHHHHHHHHHHHhcCCCcCHHHHHhhhcCCHHHHHHHHHHHHHhHHhhhccccccc
Q 001588 675 LDESFASSLLD---EFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNY 751 (1049)
Q Consensus 675 ~~~~~~s~LLe---Ef~sneer~~~LseI~GkivELa~Dq~GSRvLQklLe~aS~Eer~~IfeEI~p~~leL~tD~fGNh 751 (1049)
|++.|++++++ |+.+.+++..+-..++|++.++|.|.+||||||+.|++-+.+...+++.|+..+++.+++|++|||
T Consensus 222 ~~dvFGNyvIQkffE~gt~~q~~~l~~~~~g~v~~Lsld~ygCRVIQkale~id~~~~~~Li~ELd~~vl~~v~DQngnH 301 (503)
T KOG1488|consen 222 MTDVFGNYVIQKFFEHGTEDQRNLLHSQIKGHVLELSLDMYGCRVIQKALEKVDVSLQIQLIDELDGHLLKCVKDQNGNH 301 (503)
T ss_pred HHHHhcCchhhhhhccCCHHHHHHHHHHHHhhhhhhhcccccchhHHHHHHhcCHHHHHHHHHHHHhhHHHHHhhcccce
Confidence 45666667766 444566777778889999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCHHHHHHHHHHHHH--HHHHhHhcccccHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhccCCCchHHHHHH
Q 001588 752 VIQKFFEHGTASQVRELADQLTG--HVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCI 829 (1049)
Q Consensus 752 VLQKLLe~gs~eqr~~Li~~Lkg--~I~eLs~d~yGSrVLQkLLe~~s~eqr~~Lv~EL~~~I~eLvkDqnGNhVIQKlL 829 (1049)
||||+||..+++.+..|++.+.+ ++..||.|+|||||||++||.|+.+++..+++||..++..|+.|+|||||||.+|
T Consensus 302 ViQK~ie~~p~~~~~Fiv~~f~~~~~~~~ls~~~YGCRVIQr~lE~c~~~~~~~i~~ei~~~~~~L~~dQygNYVIQHVi 381 (503)
T KOG1488|consen 302 VIQKCIETLPPDAWQFIVDFFSGDDNLLELSTHKYGCRVIQRILEHCSEDQKQPLMEEIIRNCDQLAQDQYGNYVIQHVI 381 (503)
T ss_pred ehhhhhhccChHHHHHHHHHhcCCCceeEeeccCcccHHHHHHhhcCChHhhhHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 99999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhCChhHHHHHHHHHHhhHHHhhcCCCCchHHHHHHhhcCCHHHHHHHHHHHHHH-------HHHHhcCccccHHHHHHH
Q 001588 830 ECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQS-------VCMLAQDQYGNYVVQHVL 902 (1049)
Q Consensus 830 E~lp~e~~e~Iis~L~g~iveLsthkyGS~VIQklLe~~~d~~~r~~LIeeI~~~-------l~~La~DqyGNyVVQ~LL 902 (1049)
++..++....|++.+.++++++++|||+|+|||+||.++. ..++..|++||+.. +..|++|+|||||||++|
T Consensus 382 e~g~~~~~~~I~~~l~~~ll~~Sq~KfASnVVEk~~~~a~-~~~r~~i~~Ei~~~~~~~~~~L~~mmkdQYgNYVVQkmi 460 (503)
T KOG1488|consen 382 EHGSPYRDTIIIKCLLGNLLSMSQHKFASNVVEKAFLFAP-PLLRALIMNEIFPGYVEHPDALDIMMKDQYGNYVVQKMI 460 (503)
T ss_pred hcCChhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhCC-HHHHHHHHHHhcCCccCCccHHHHHHHHhhhhhHHHHHH
Confidence 9999988889999999999999999999999999999985 56778899999863 788999999999999999
Q ss_pred hhCChhhHHHHHHHHHHHHHHHhcCchHHHHHHHHHhc
Q 001588 903 EHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSF 940 (1049)
Q Consensus 903 e~~~~~eR~~IIe~L~g~Iv~LS~~K~GSrVVEKcL~~ 940 (1049)
+.+.+.+|+.|+.+++.++..|-..+||-|+|+++=++
T Consensus 461 ~~~~~~q~~~i~~rI~~h~~~Lrk~syGKhIia~lek~ 498 (503)
T KOG1488|consen 461 DICGPEQRELIKSRVKPHASRLRKFSYGKHIIAKLEKL 498 (503)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHh
Confidence 99999999999999999999999999999999986543
No 8
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.4e-30 Score=295.03 Aligned_cols=300 Identities=20% Similarity=0.366 Sum_probs=250.0
Q ss_pred CCCcCCCCCChhhhHHHHHhhhcCccccchHHHHHHHHHHHhcCCCcCHHHHHhhhcCCHHHHHHHHHHHHHhHHhhhcc
Q 001588 667 WHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTD 746 (1049)
Q Consensus 667 w~~~~g~~~~~~~~s~LLeEf~sneer~~~LseI~GkivELa~Dq~GSRvLQklLe~aS~Eer~~IfeEI~p~~leL~tD 746 (1049)
|..-|.++...+.+..++.| .+.-|+|++.+++..|+.|||||.++++++.++|+.||+|+.|.+++||++
T Consensus 138 WEkLR~k~~~ke~R~klv~e---------l~~likg~i~~lv~aHDtSRViQt~Vky~s~~~r~~if~eL~p~~v~l~ks 208 (652)
T KOG2050|consen 138 WEKLRRKTTPKEERDKLVSE---------LYKLIKGKISKLVFAHDTSRVIQTCVKYGSEAQREQIFEELLPFFVELAKS 208 (652)
T ss_pred HHHHhccCCcHHHHHHHHHH---------HHHHHhhhHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHhHHHHHHHHh
Confidence 66666555555666666665 577889999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhcccCCHHHHHHHHHHHHHHHHHhHhcccccHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHhccCCCchHH
Q 001588 747 VFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIE-VVELDQQTQMVKELDGHIMRCVRDQNGNHVI 825 (1049)
Q Consensus 747 ~fGNhVLQKLLe~gs~eqr~~Li~~Lkg~I~eLs~d~yGSrVLQkLLe-~~s~eqr~~Lv~EL~~~I~eLvkDqnGNhVI 825 (1049)
+||-|+|||+|.++++.++..|++.|.||+..|..|+.|+.||..++. +++.+||..|++||++..+.++++.+- ..|
T Consensus 209 kY~k~~v~KmLkyGsk~q~a~iI~sl~Ghv~kLlRH~eaa~Vve~ay~~~A~l~Qr~~li~EfYG~efqlfK~sn~-~Tl 287 (652)
T KOG2050|consen 209 KYAKFFVQKMLKYGSKAQKAKIINSLRGHVVKLLRHREAAYVVEYAYNDFATLEQRQYLIQEFYGDEFQLFKDSND-KTL 287 (652)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhhccHHHHHHHHHHHhhHHHHHHhccCc-ccH
Confidence 999999999999999999999999999999999999999999999995 589999999999999999999999443 345
Q ss_pred HHHHhhCChhHHHHHHHHHHhhHHHhhcCCCCchHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHhhC
Q 001588 826 QKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHG 905 (1049)
Q Consensus 826 QKlLE~lp~e~~e~Iis~L~g~iveLsthkyGS~VIQklLe~~~d~~~r~~LIeeI~~~l~~La~DqyGNyVVQ~LLe~~ 905 (1049)
.++++..++ .+..|+..+...+.. +.+... ....|+.. +.--.+.++
T Consensus 288 ~kil~~~pe-kk~~I~~~l~~~I~~-------------v~eKg~---v~~tivHk----------------~mlEy~~~a 334 (652)
T KOG2050|consen 288 DKILAEAPE-KKASILRHLKAIITP-------------VAEKGS---VDHTIVHK----------------LMLEYLTIA 334 (652)
T ss_pred HHHHHhChH-hHHHHHHHHHHHhHH-------------Hhhcch---hHHHHHHH----------------HHHHHHHhC
Confidence 555555443 444555544432222 222110 00111111 112235577
Q ss_pred ChhhHHHHHHHHHHHHHHHhcCchHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCchhHHHhhcCCchHHHHHHHHhcCCh
Q 001588 906 KPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDD 985 (1049)
Q Consensus 906 ~~~eR~~IIe~L~g~Iv~LS~~K~GSrVVEKcL~~as~k~Rk~IIkELlg~~~~~e~L~~La~D~~GNyVVQklLd~~dd 985 (1049)
+++++..+++.+.+.+..|..++.||+|..+||+++++++|+.||+.|. +++..+++|+||+.|+-.+|++.||
T Consensus 335 de~e~~e~l~ll~elv~e~vHT~dGS~vAm~li~~a~aKeRK~IiK~~K------~h~~K~A~~~yGh~vlia~ldc~DD 408 (652)
T KOG2050|consen 335 DEEEKSELLELLKELVPEMVHTRDGSRVAMKLIWHATAKERKLIIKNMK------EHVEKIANDEYGHLVLIALLDCTDD 408 (652)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhCCHHHHHHHHHHHH------HHHHHHHhhccCceehhhhhcccch
Confidence 8899999999999999999999999999999999999999999999996 8899999999999999999999999
Q ss_pred HH--HHHHHHHHHHHHHHHhhcCCchhHHHHH
Q 001588 986 QQ--LELILNRIKVHLNALKKYTYGKHIVARV 1015 (1049)
Q Consensus 986 ~q--Re~ILseLk~~L~~L~~~~yGk~IV~kl 1015 (1049)
+. ++.|.+++..++..|..++||++|+..+
T Consensus 409 T~l~kk~i~~e~~~el~~li~Dk~Grrv~lyl 440 (652)
T KOG2050|consen 409 TKLLKKLIYDELKSELKSLISDKYGRRVILYL 440 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhhhhh
Confidence 97 5899999999999999999999997553
No 9
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.5e-29 Score=304.71 Aligned_cols=249 Identities=22% Similarity=0.366 Sum_probs=230.2
Q ss_pred HhcccccHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHhhCChhHHHHHHHHHHhhHHHhhcCCCCch
Q 001588 780 SLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCR 859 (1049)
Q Consensus 780 s~d~yGSrVLQkLLe~~s~eqr~~Lv~EL~~~I~eLvkDqnGNhVIQKlLE~lp~e~~e~Iis~L~g~iveLsthkyGS~ 859 (1049)
++|.+|||-||+.|+....++...++.|+...+.+|+.|.+||||||||+|++.++.+..++..+.++++.|+.|+||||
T Consensus 447 ~~Dq~g~r~LQk~Lds~s~~~~~~~~~e~~d~~~eLs~d~fGNyliQK~fe~~s~~q~~~ml~~~~~~~~~ls~~~~Gtr 526 (777)
T COG5099 447 CKDQHGSRFLQKLLDSNSSPEIEVIFNEILDQLVELSSDYFGNYLIQKLFEYGSEIQKSIMLSKSSKHLVSLSVHKYGTR 526 (777)
T ss_pred cCCcHHHHHHHHHhcccchHHHHHHHHHHhhhhHHHHHhhhcchhhHHHHHhccHHHHHHHHHHhhhhHHHhhccccccH
Confidence 79999999999999998888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 001588 860 VIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLS 939 (1049)
Q Consensus 860 VIQklLe~~~d~~~r~~LIeeI~~~l~~La~DqyGNyVVQ~LLe~~~~~eR~~IIe~L~g~Iv~LS~~K~GSrVVEKcL~ 939 (1049)
|+||+++...++.+...|++++.+++..|++|++||+|+|++++....+....|++.+.+++.++++++|||+||++||+
T Consensus 527 v~QK~id~~~t~~qi~~lv~~l~~~~~~li~dqngNHviqKci~~~~~~~~~fif~~~~~~~~~is~~r~Gs~vvq~~le 606 (777)
T COG5099 527 VLQKAIDIVSTDIQISLLVEELRPYCLQLIKDQNGNHVIQKCIEKFNKEKNQFIFDSINENLYDLSTHRYGSRVVQRCLE 606 (777)
T ss_pred HHHHHHhccCchhhHHHHHHHhhhhhHHHHHhccCCHHHHHHHHhcCccccchHHHHHHhhhHhhhccccccHHHHHHHH
Confidence 99999999988888778999999999999999999999999999999888899999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhcCCCCchhHHHhhcCCchHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHhhcCCchhHHHHHHHH
Q 001588 940 FGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKV-HLNALKKYTYGKHIVARVEKL 1018 (1049)
Q Consensus 940 ~as~k~Rk~IIkELlg~~~~~e~L~~La~D~~GNyVVQklLd~~dd~qRe~ILseLk~-~L~~L~~~~yGk~IV~klEkl 1018 (1049)
++..++.+.++++++ .....|+.|+|||||||++|+.+-.+.++.|+..+.. ++.+|+.++||..||++|.+.
T Consensus 607 ~~~~~~~~~~~~~Ii------~~~~~L~~dq~GNyvvq~il~~g~~~~k~~i~~~~l~~~v~elS~~kfaSnvVeK~i~~ 680 (777)
T COG5099 607 NCNSEDKENLVEEII------SNSKYLSQDQYGNYVVQHILDNGAEPNKERIIIKLLSKRVVELSTHKFASNVVEKCIKY 680 (777)
T ss_pred hccHhHHHHHHHHHH------HHHHhhccCCcchhhhhHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998 5688999999999999999999999999988888887 999999999999997666555
Q ss_pred HHcCCCcHHHHHHHHH
Q 001588 1019 VAAGGIYLPFLYNFFS 1034 (1049)
Q Consensus 1019 v~~ge~R~~l~~al~~ 1034 (1049)
......|..|+..++.
T Consensus 681 ~~~~~~~~ril~~~~~ 696 (777)
T COG5099 681 ASDSFKRSRILNELTN 696 (777)
T ss_pred CCcchHHHHHHHHHhc
Confidence 5566656788888775
No 10
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.9e-27 Score=277.01 Aligned_cols=282 Identities=20% Similarity=0.310 Sum_probs=250.0
Q ss_pred HHHHHHHhHHhhhccccccchhhhhcccCCHHHHHHHHHHHHHHHHHhHhcccccHHHHHHHhhcCHHHHHHHHHHHHH-
Q 001588 732 VFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDG- 810 (1049)
Q Consensus 732 IfeEI~p~~leL~tD~fGNhVLQKLLe~gs~eqr~~Li~~Lkg~I~eLs~d~yGSrVLQkLLe~~s~eqr~~Lv~EL~~- 810 (1049)
.+.++...+..+++|++|++++||+++.++......|+.++..++.+|..|++|..++|+++++++.+++.+|+.-|..
T Consensus 211 ~~~~~~~~~~~~akd~~gc~~lq~~~~~~~~~~~~~if~~~~~~~~~Lm~d~fGny~vqkl~~~~~~eq~~~i~~~lts~ 290 (536)
T KOG2049|consen 211 SMVEIQGSINLIAKDQHGCRLLQKLLSEGTKVSILKIFLETIQDVPELMEDPFGNYLVQKLLEVCDEEQLTKIVSLLTSD 290 (536)
T ss_pred hhhccchhhhhhcccccCCcccccCcccCccccHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhCHHHHHHHHHHHhcC
Confidence 4455567899999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred --HHHHHhccCCCchHHHHHHhhCCh-hHHHHHHHHHHhhHHHhhcCCCCchHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 001588 811 --HIMRCVRDQNGNHVIQKCIECVPE-DAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCM 887 (1049)
Q Consensus 811 --~I~eLvkDqnGNhVIQKlLE~lp~-e~~e~Iis~L~g~iveLsthkyGS~VIQklLe~~~d~~~r~~LIeeI~~~l~~ 887 (1049)
.+.+++.+.||..+||+++++... +.+..+++.+...+..|.+++||.+|||+||+.... ...+.+.+.+...+..
T Consensus 291 p~~fv~i~~N~~GTr~iQkl~~~~~~~dqI~~~~~ai~~~fl~L~~D~~g~~Viq~cl~~f~~-~~~~~l~e~i~~~c~~ 369 (536)
T KOG2049|consen 291 PRLFVEICTNMYGTRAVQKLLGKSDSVDQISLFLDAIKPNFLHLIKDKNGNHVIQRCLRVFSK-EKNEFLYEAILRYCLD 369 (536)
T ss_pred ccceeEeeecCchhHHHHHHHhccccHHHHHHHHHHHHhhhHHhhhhcchhHHHHHHHHhcCc-hhhhHHHHHHHHHHHH
Confidence 577889999999999999998765 567888999999999999999999999999998754 4567789999999999
Q ss_pred HhcCccccHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCchHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCchhHHHhh
Q 001588 888 LAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMM 967 (1049)
Q Consensus 888 La~DqyGNyVVQ~LLe~~~~~eR~~IIe~L~g~Iv~LS~~K~GSrVVEKcL~~as~k~Rk~IIkELlg~~~~~e~L~~La 967 (1049)
+|.|++|+.|+|++|.....+.|+.+++++..+-..|+.+.||-+||+.+|+.-.......|+..+. .+..+|+
T Consensus 370 iA~~~hGCcvLq~cl~~~~~~~rd~Lv~~i~~naL~Ls~d~~GNyvVQyvl~L~~~~~t~~i~~~L~------g~~veLS 443 (536)
T KOG2049|consen 370 LATDQHGCCVLQKCLDYSRGEQRDRLVEEISRNALLLSNDPYGNYVVQYVLELNDPSCTVNIAEKLR------GHYVELS 443 (536)
T ss_pred HHHhccccchhHHHhcchhHHHHHHHHHHHHHHhHhhhcCccccchhhhhhhhcCcchHHHHHHhhh------hHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999876666677888886 5789999
Q ss_pred cCCchHHHHHHHHhcCChHHHHHHHHHHHH--HHHHHhhcCCchhHHHHHHHHHHc
Q 001588 968 KDQFANYVVQKVLETCDDQQLELILNRIKV--HLNALKKYTYGKHIVARVEKLVAA 1021 (1049)
Q Consensus 968 ~D~~GNyVVQklLd~~dd~qRe~ILseLk~--~L~~L~~~~yGk~IV~klEklv~~ 1021 (1049)
..+||+|||+|||+...... +.|+.||.. ++..|..++||-.|+++.+..-..
T Consensus 444 ~qKfgS~vVEk~L~~~~~~~-~~iV~ell~~~~~~~Ll~D~ygNyViq~AL~vtk~ 498 (536)
T KOG2049|consen 444 FQKFGSHVVEKLLKVRESSR-AQIVLELLSCDELDRLLRDPYGNYVIQTALRVTKV 498 (536)
T ss_pred HHhhccHHHHHHHhcCcchh-hHHHHHHHccccHHHHhhCccchHHHHHHHHHhhh
Confidence 99999999999999886654 667777776 999999999999998776665433
No 11
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.5e-25 Score=259.46 Aligned_cols=333 Identities=19% Similarity=0.305 Sum_probs=225.5
Q ss_pred ChhhhHHHHHhhhcC----ccccch-----HHHHHHHHHHHhcCCCcCHHHHHhhhcCCHHHHHHHHHHHHHhHHhhhcc
Q 001588 676 DESFASSLLDEFKSN----KTKCFE-----LSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTD 746 (1049)
Q Consensus 676 ~~~~~s~LLeEf~sn----eer~~~-----LseI~GkivELa~Dq~GSRvLQklLe~aS~Eer~~IfeEI~p~~leL~tD 746 (1049)
...|....++.|+.+ +|+.++ ++|..|++++++++|.+|.++|.++..++..+...+|.++.+++..+++|
T Consensus 64 ~~~YF~~a~~a~~~~~~~~eEr~~~f~n~i~ee~~grel~l~tnqi~Sk~le~l~~f~d~~ql~~ff~~~~g~lr~i~~~ 143 (650)
T KOG2188|consen 64 ELGYFRRAESAFKGGFERGEERNRMFVNSIFEEVYGRELDLATNQIGSKVLEDLLGFSDSRQLCDFFSALNGVLRSIAQH 143 (650)
T ss_pred hhhHHHHHHHHhhcCccccccceeeeehhHHHHhccceeehhccchhHHHHHHHhccCCchhHHHHHHHHhhhHHHHHHH
Confidence 456666677766654 455443 88999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhcccCC--------------------------HHHHHHHHHHHHHHHH-HhHhcccccHHHHHHHhhcCH-
Q 001588 747 VFGNYVIQKFFEHGT--------------------------ASQVRELADQLTGHVL-TLSLQMYGCRVIQKAIEVVEL- 798 (1049)
Q Consensus 747 ~fGNhVLQKLLe~gs--------------------------~eqr~~Li~~Lkg~I~-eLs~d~yGSrVLQkLLe~~s~- 798 (1049)
+||+||+|++|++.. ++....++..+.+++. .|+.|.||+||+++++.++..
T Consensus 144 r~gshVle~~L~~~a~~vg~e~~~~s~dea~~~ke~p~~t~e~~~~~m~nei~~~~~~~l~~~~~gshv~rt~~l~l~s~ 223 (650)
T KOG2188|consen 144 RFGSHVLESALEKLAALVGQEAALLSEDEAAVEKEGPFVTCENLLLLMLNEISPHVLKTLMELIFGSHVLRTILLLLFSM 223 (650)
T ss_pred HHHHHHHHHHHHHHHHHhCccccccchhhhcccccCcccccchHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHccC
Confidence 999999999997721 2234567888999998 999999999999999875431
Q ss_pred ----H-----------------------------------------------------HHHHHHH-------------HH
Q 001588 799 ----D-----------------------------------------------------QQTQMVK-------------EL 808 (1049)
Q Consensus 799 ----e-----------------------------------------------------qr~~Lv~-------------EL 808 (1049)
+ -+...++ .+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pqsFp~~l~~~i~~~l~~~~~~s~~~~~~~k~~~vDk~~s~v~q~~i~l~~ 303 (650)
T KOG2188|consen 224 CPIAESEHKLALRKAAHRGMDDWDAVTTPPQSFPQRLIVWICTGLSALQDVSESKKRDLKGYEVDKSSSNVLQKAIRLAF 303 (650)
T ss_pred cchhhhHHHHHHHHHhhccccchhhhhcChhhccHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0000000 00
Q ss_pred H-------------------------------HHHHHHhccCCCchHHHHHHhhCChhHHHHHHHHHHhhHHHhhcCCCC
Q 001588 809 D-------------------------------GHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYG 857 (1049)
Q Consensus 809 ~-------------------------------~~I~eLvkDqnGNhVIQKlLE~lp~e~~e~Iis~L~g~iveLsthkyG 857 (1049)
. +-..++..|+.|+|++..+++.+++...+.+...|.+++.+|+.|+.+
T Consensus 304 ~~~~~~~~~~~~~lv~~~~~~~e~d~~~~kE~~~~k~~l~d~tgSrllE~Imeva~~~~~~lf~~~f~~rl~~La~~p~a 383 (650)
T KOG2188|consen 304 DENKNDQFMESPRLVTKFQLFNEKDGLWGKERSFLKELLSDQTGSRLLEVIMEVASESLLSLFYIVFCGRLDELAVHPIA 383 (650)
T ss_pred hhhcchhhhhhhhHHHhhhhccccCcccccccHHHHHHHhcCcccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhCccc
Confidence 0 001124456777777777777777777766666667777777777777
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhc-----------------------------------------------
Q 001588 858 CRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQ----------------------------------------------- 890 (1049)
Q Consensus 858 S~VIQklLe~~~d~~~r~~LIeeI~~~l~~La~----------------------------------------------- 890 (1049)
..+||++|++.++.+....|++++.+.+..|..
T Consensus 384 NF~lQrli~h~~~~e~v~~v~eeL~P~~~~LL~~g~~gVv~sLia~~~rl~s~q~~~l~~Li~a~~~~~~~~k~il~~lL 463 (650)
T KOG2188|consen 384 NFPLQRLINHLTSLEDVGSVIEELAPKLSSLLEQGNSGVVASLIAASARLGSYQDKMLQQLIQAFHAASESKKNILPCLL 463 (650)
T ss_pred cchHHHHHHhccCHHHHHHHHHHHhHHHHHHHHcCCchHhHHHHHHHHhhchhHHHHHHHHHHHHhcCChhhcchHHHHH
Confidence 777777777777666666666665554322221
Q ss_pred ------------------CccccHHHHHHHhhCChhh---HHHHHHHHHHHHHHHhcCchHHHHHHHHHhc--CCHHHHH
Q 001588 891 ------------------DQYGNYVVQHVLEHGKPHE---RSAIIKKLTGQIVQMSQQKFASNVIEKCLSF--GTPAERQ 947 (1049)
Q Consensus 891 ------------------DqyGNyVVQ~LLe~~~~~e---R~~IIe~L~g~Iv~LS~~K~GSrVVEKcL~~--as~k~Rk 947 (1049)
|+.|+.++|+++.+.++.. -..+..-...+|.+++++++||||||.+|.. .+++.|+
T Consensus 464 ~~~~~~g~~~~~~~t~~~h~~ga~lle~lv~f~k~~i~~litsll~L~~eqi~e~~~~~~~ShlIeavL~S~~l~~~~~~ 543 (650)
T KOG2188|consen 464 FSLTLFGCVGEWFLTEKFHQKGAVLLEELVNFSKTHIQTLITSLLSLSEEQILEMSCNGVGSHLIEAVLASKDLGEKIKE 543 (650)
T ss_pred HHhhhcccccccccHHHHhhchhHHHHHHHhhchhhhHHHHHHHHhhhHHHHHHHhcCCchHHHHHHHHHhccccHHHHH
Confidence 1124444444444433211 1122222234666677777777777777765 4566666
Q ss_pred HHHHHHhcCCCCchhHHHhhcCCchHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCchhHHHH
Q 001588 948 ALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVAR 1014 (1049)
Q Consensus 948 ~IIkELlg~~~~~e~L~~La~D~~GNyVVQklLd~~dd~qRe~ILseLk~~L~~L~~~~yGk~IV~k 1014 (1049)
+||..+- ....+|+.+.+|++|+.|||+.+++..|++|+++|...-++++.++||+.|+.+
T Consensus 544 kLi~~l~------g~~~~La~~~~GSrv~eK~wea~~~~~k~rIakeL~~~~~~vk~s~~gk~v~~~ 604 (650)
T KOG2188|consen 544 KLINILD------GSFVTLALSTFGSRVFEKCWEATDVLYKERIAKELVGIHNDVKSSKYGKFVMLN 604 (650)
T ss_pred HHHHHhh------ccchheeecCcccHHHHHHHHHhhHHHHHHHHHHHHhhccccccCcchHHHHHh
Confidence 6666664 346667777777777777777777666777777777777777777777776654
No 12
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.1e-21 Score=227.57 Aligned_cols=310 Identities=15% Similarity=0.236 Sum_probs=233.3
Q ss_pred HHHHHHHHHhHHhhhccccccchhhhhcccCCHHHHHHHHHHHHHHHHHhHhcccccHHHHHHHhhcC------------
Q 001588 730 NMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVE------------ 797 (1049)
Q Consensus 730 ~~IfeEI~p~~leL~tD~fGNhVLQKLLe~gs~eqr~~Li~~Lkg~I~eLs~d~yGSrVLQkLLe~~s------------ 797 (1049)
+.||+|..+..+.|++++.||+++|+++..++..|.+.++..+.+++..|+.|+||+||+|++|+.+.
T Consensus 91 n~i~ee~~grel~l~tnqi~Sk~le~l~~f~d~~ql~~ff~~~~g~lr~i~~~r~gshVle~~L~~~a~~vg~e~~~~s~ 170 (650)
T KOG2188|consen 91 NSIFEEVYGRELDLATNQIGSKVLEDLLGFSDSRQLCDFFSALNGVLRSIAQHRFGSHVLESALEKLAALVGQEAALLSE 170 (650)
T ss_pred hhHHHHhccceeehhccchhHHHHHHHhccCCchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhCccccccch
Confidence 45999999999999999999999999999999999999999999999999999999999999997532
Q ss_pred --------------HHHHHHHHHHHHHHHH-HHhccCCCchHHHHHHhhCChh---------------------------
Q 001588 798 --------------LDQQTQMVKELDGHIM-RCVRDQNGNHVIQKCIECVPED--------------------------- 835 (1049)
Q Consensus 798 --------------~eqr~~Lv~EL~~~I~-eLvkDqnGNhVIQKlLE~lp~e--------------------------- 835 (1049)
++...-|+.++.+++. .++.+.+|.||++++|-++...
T Consensus 171 dea~~~ke~p~~t~e~~~~~m~nei~~~~~~~l~~~~~gshv~rt~~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (650)
T KOG2188|consen 171 DEAAVEKEGPFVTCENLLLLMLNEISPHVLKTLMELIFGSHVLRTILLLLFSMCPIAESEHKLALRKAAHRGMDDWDAVT 250 (650)
T ss_pred hhhcccccCcccccchHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHccCcchhhhHHHHHHHHHhhccccchhhhh
Confidence 1123346678888888 8999999999999887654110
Q ss_pred -------------------------------HHHHHHHHHHh--------------------------------------
Q 001588 836 -------------------------------AIQFIVLTFYD-------------------------------------- 846 (1049)
Q Consensus 836 -------------------------------~~e~Iis~L~g-------------------------------------- 846 (1049)
....+++....
T Consensus 251 ~~pqsFp~~l~~~i~~~l~~~~~~s~~~~~~~k~~~vDk~~s~v~q~~i~l~~~~~~~~~~~~~~~lv~~~~~~~e~d~~ 330 (650)
T KOG2188|consen 251 TPPQSFPQRLIVWICTGLSALQDVSESKKRDLKGYEVDKSSSNVLQKAIRLAFDENKNDQFMESPRLVTKFQLFNEKDGL 330 (650)
T ss_pred cChhhccHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhhhhHHHhhhhccccCcc
Confidence 00000000000
Q ss_pred ------hHHHhhcCCCCchHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHhhCC-hhhHHHHHHHHHH
Q 001588 847 ------QVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGK-PHERSAIIKKLTG 919 (1049)
Q Consensus 847 ------~iveLsthkyGS~VIQklLe~~~d~~~r~~LIeeI~~~l~~La~DqyGNyVVQ~LLe~~~-~~eR~~IIe~L~g 919 (1049)
-...+..|+.|+++++.+++.|.... ...+...+...+..|+.++.+|++||++|++.. .++...|++.|.+
T Consensus 331 ~~kE~~~~k~~l~d~tgSrllE~Imeva~~~~-~~lf~~~f~~rl~~La~~p~aNF~lQrli~h~~~~e~v~~v~eeL~P 409 (650)
T KOG2188|consen 331 WGKERSFLKELLSDQTGSRLLEVIMEVASESL-LSLFYIVFCGRLDELAVHPIANFPLQRLINHLTSLEDVGSVIEELAP 409 (650)
T ss_pred cccccHHHHHHHhcCcccHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHhCccccchHHHHHHhccCHHHHHHHHHHHhH
Confidence 01122337888888888888886543 366677778889999999999999999999988 8889999999998
Q ss_pred HHHHHhcCch--------------H---HHHHHHHHhc---CCH-------------------------HHH----HHHH
Q 001588 920 QIVQMSQQKF--------------A---SNVIEKCLSF---GTP-------------------------AER----QALV 950 (1049)
Q Consensus 920 ~Iv~LS~~K~--------------G---SrVVEKcL~~---as~-------------------------k~R----k~II 950 (1049)
++..|..+.+ | ..+++.++.. +++ +.+ ..|+
T Consensus 410 ~~~~LL~~g~~gVv~sLia~~~rl~s~q~~~l~~Li~a~~~~~~~~k~il~~lL~~~~~~g~~~~~~~t~~~h~~ga~ll 489 (650)
T KOG2188|consen 410 KLSSLLEQGNSGVVASLIAASARLGSYQDKMLQQLIQAFHAASESKKNILPCLLFSLTLFGCVGEWFLTEKFHQKGAVLL 489 (650)
T ss_pred HHHHHHHcCCchHhHHHHHHHHhhchhHHHHHHHHHHHHhcCChhhcchHHHHHHHhhhcccccccccHHHHhhchhHHH
Confidence 7777655444 1 1122222110 001 111 2233
Q ss_pred HHHhcCCC-------------CchhHHHhhcCCchHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHhhcCCchhHHHHH
Q 001588 951 NEMLGSIE-------------ENEPLQVMMKDQFANYVVQKVLET--CDDQQLELILNRIKVHLNALKKYTYGKHIVARV 1015 (1049)
Q Consensus 951 kELlg~~~-------------~~e~L~~La~D~~GNyVVQklLd~--~dd~qRe~ILseLk~~L~~L~~~~yGk~IV~kl 1015 (1049)
++++.... ..++|.+|+++.+|++||+.+|.. .++..|++||..+..+..+|+.+.+|+||+++|
T Consensus 490 e~lv~f~k~~i~~litsll~L~~eqi~e~~~~~~~ShlIeavL~S~~l~~~~~~kLi~~l~g~~~~La~~~~GSrv~eK~ 569 (650)
T KOG2188|consen 490 EELVNFSKTHIQTLITSLLSLSEEQILEMSCNGVGSHLIEAVLASKDLGEKIKEKLINILDGSFVTLALSTFGSRVFEKC 569 (650)
T ss_pred HHHHhhchhhhHHHHHHHHhhhHHHHHHHhcCCchHHHHHHHHHhccccHHHHHHHHHHhhccchheeecCcccHHHHHH
Confidence 33332110 137799999999999999999999 578889999999999999999999999999999
Q ss_pred HHHHHcCCCcHHHHHHHHHhhhhccc
Q 001588 1016 EKLVAAGGIYLPFLYNFFSSFAVLSV 1041 (1049)
Q Consensus 1016 Eklv~~ge~R~~l~~al~~af~~~~~ 1041 (1049)
++... ...|.+|++.++.--.++..
T Consensus 570 wea~~-~~~k~rIakeL~~~~~~vk~ 594 (650)
T KOG2188|consen 570 WEATD-VLYKERIAKELVGIHNDVKS 594 (650)
T ss_pred HHHhh-HHHHHHHHHHHHhhcccccc
Confidence 99887 66789999999965555443
No 13
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=7.5e-19 Score=202.55 Aligned_cols=258 Identities=17% Similarity=0.265 Sum_probs=221.7
Q ss_pred HHHHHHHHHHHHHHhHhcccccHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHhhCChhHHHHHHHHH
Q 001588 765 VRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTF 844 (1049)
Q Consensus 765 r~~Li~~Lkg~I~eLs~d~yGSrVLQkLLe~~s~eqr~~Lv~EL~~~I~eLvkDqnGNhVIQKlLE~lp~e~~e~Iis~L 844 (1049)
..+|++.+++++.+|+.-+..+||||+++.+++.+++.+|++||.+.+.+|+++.||-|++|++|..+.+..++.|+..|
T Consensus 155 v~el~~likg~i~~lv~aHDtSRViQt~Vky~s~~~r~~if~eL~p~~v~l~kskY~k~~v~KmLkyGsk~q~a~iI~sl 234 (652)
T KOG2050|consen 155 VSELYKLIKGKISKLVFAHDTSRVIQTCVKYGSEAQREQIFEELLPFFVELAKSKYAKFFVQKMLKYGSKAQKAKIINSL 234 (652)
T ss_pred HHHHHHHHhhhHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34566667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHhhcCCCCchHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHhhCChhhHHHHHHHHHHHHHHH
Q 001588 845 YDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQM 924 (1049)
Q Consensus 845 ~g~iveLsthkyGS~VIQklLe~~~d~~~r~~LIeeI~~~l~~La~DqyGNyVVQ~LLe~~~~~eR~~IIe~L~g~Iv~L 924 (1049)
+|+++.|..|+.|+.|++..+...+...+|+.|+.|++.....++.+. --..|..+++. .++.+..|++.|...|..+
T Consensus 235 ~Ghv~kLlRH~eaa~Vve~ay~~~A~l~Qr~~li~EfYG~efqlfK~s-n~~Tl~kil~~-~pekk~~I~~~l~~~I~~v 312 (652)
T KOG2050|consen 235 RGHVVKLLRHREAAYVVEYAYNDFATLEQRQYLIQEFYGDEFQLFKDS-NDKTLDKILAE-APEKKASILRHLKAIITPV 312 (652)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHhhccHHHHHHHHHHHhhHHHHHHhcc-CcccHHHHHHh-ChHhHHHHHHHHHHHhHHH
Confidence 999999999999999999999998889999999999999999999883 23345556653 3667788999999888777
Q ss_pred hcCch-----HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCchhHHHhhcCCchHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 001588 925 SQQKF-----ASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHL 999 (1049)
Q Consensus 925 S~~K~-----GSrVVEKcL~~as~k~Rk~IIkELlg~~~~~e~L~~La~D~~GNyVVQklLd~~dd~qRe~ILseLk~~L 999 (1049)
+...- -..|+...|..|+++.+..+++.+. +.+.+|+..+-|+.|..+|+...+.+.|+.|++.+++|+
T Consensus 313 ~eKg~v~~tivHk~mlEy~~~ade~e~~e~l~ll~------elv~e~vHT~dGS~vAm~li~~a~aKeRK~IiK~~K~h~ 386 (652)
T KOG2050|consen 313 AEKGSVDHTIVHKLMLEYLTIADEEEKSELLELLK------ELVPEMVHTRDGSRVAMKLIWHATAKERKLIIKNMKEHV 386 (652)
T ss_pred hhcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH------HHHHHHhcCCchHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 64332 3556666778899999999988886 689999999999999999999999999999999999999
Q ss_pred HHHhhcCCchhHHHHHHHHHHcCCCcHHHHHHHH
Q 001588 1000 NALKKYTYGKHIVARVEKLVAAGGIYLPFLYNFF 1033 (1049)
Q Consensus 1000 ~~L~~~~yGk~IV~klEklv~~ge~R~~l~~al~ 1033 (1049)
..++++.||+.|+- .++.+.++..-+-+.+.
T Consensus 387 ~K~A~~~yGh~vli---a~ldc~DDT~l~kk~i~ 417 (652)
T KOG2050|consen 387 EKIANDEYGHLVLI---ALLDCTDDTKLLKKLIY 417 (652)
T ss_pred HHHHhhccCceehh---hhhcccchHHHHHHHHH
Confidence 99999999999864 44444444333333333
No 14
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=99.60 E-value=1.3e-15 Score=180.54 Aligned_cols=299 Identities=18% Similarity=0.252 Sum_probs=235.8
Q ss_pred CHHHHHHHHHHHHHhHHhhhccccccchhhhhcccCCHHHHHHHHHHHHHHHHHhHhcccccHHHHHHHhhcCHHHHHH-
Q 001588 725 TTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQ- 803 (1049)
Q Consensus 725 S~Eer~~IfeEI~p~~leL~tD~fGNhVLQKLLe~gs~eqr~~Li~~Lkg~I~eLs~d~yGSrVLQkLLe~~s~eqr~~- 803 (1049)
+..|.+.+.-++..+..+|..|-.||-|+||+|+++....+..+......++..+..|+||.++.||+++.+..|.+.+
T Consensus 533 S~pEied~ai~mLDe~~elsSdylGNtVvqkfFe~sS~~ik~aml~r~s~ylts~gvHknGtw~~qk~ik~a~te~qik~ 612 (1007)
T KOG4574|consen 533 SAPEIEDLAILMLDELPELSSDYLGNTVVQKFFELSSDIIKDAMLRRGSKYLTSMGVHKNGTWACQKIIKMAFTERQIKL 612 (1007)
T ss_pred cchhHHHHHHHHhccCCcchhhhhcchhhHHHHhhccHHHHHHHHhhhhhhhhhccccccchHHHHHHHHHhhchhhhhe
Confidence 3456777778888888999999999999999999999999999999999999999999999999999999887665544
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHHhhCChhHHHHHHHHHHhhHHHhhcCCCCchHHHHHHhhcC-CHHHHHHHHHH-H
Q 001588 804 MVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCH-DEKTQSIMMDE-I 881 (1049)
Q Consensus 804 Lv~EL~~~I~eLvkDqnGNhVIQKlLE~lp~e~~e~Iis~L~g~iveLsthkyGS~VIQklLe~~~-d~~~r~~LIee-I 881 (1049)
++.-+++....++.|++||||+|.+|+..-+ ...||++.++.++.++.+..||++.+.+||+... ..+.....++. |
T Consensus 613 iv~g~dpyc~~l~~dqfgnyvaqd~LkF~fp-~nsFVfE~v~s~~~~ivQsrfGsravrAcle~lNa~~e~qsl~~~s~i 691 (1007)
T KOG4574|consen 613 IVRGVDPYCTPLLNDQFGNYVAQDSLKFGFP-WNSFVFESVFSHFWDIVQSRFGSRAVRACLEALNANTEDQSLVRESCI 691 (1007)
T ss_pred eeeccCcchhhHHHHhhcceeeeeehhccCc-cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhccCchhhhhhhhhhh
Confidence 5577888888999999999999999997654 5678899999999999999999999999999743 22222323332 2
Q ss_pred HHHHHHHhcCccccHHHHHHHhhCChh-hHHHHHHHHHHHHHHHhcCchHHHHHHHHHhcCCHH-HHHHHHHHHhcCCCC
Q 001588 882 LQSVCMLAQDQYGNYVVQHVLEHGKPH-ERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPA-ERQALVNEMLGSIEE 959 (1049)
Q Consensus 882 ~~~l~~La~DqyGNyVVQ~LLe~~~~~-eR~~IIe~L~g~Iv~LS~~K~GSrVVEKcL~~as~k-~Rk~IIkELlg~~~~ 959 (1049)
....-.++.+..|-..|.++|+.+..- +-..++..+.++++.+|+||.|+-+|.|++.++.+. .|++|++.|+.-...
T Consensus 692 Is~ss~latnsng~llvtw~lDns~~~nrh~~l~~~lt~el~~lC~h~Lgsttv~Kl~n~~qepvs~ekii~hlf~~~n~ 771 (1007)
T KOG4574|consen 692 ISKSSYLATNSNGLLLVTWLLDNSSLPNRHTILAHGLTKELVMLCFHKLGSTTVLKLLNLRQEPVSREKIIEHLFHLRNF 771 (1007)
T ss_pred hhchhhhhhcCccceeeeeecccccccchhhHHhhhhhhccchhhhhhccchhhhhhhhcCCChHHHHHHHHHHhhcccc
Confidence 233577889999999999999977633 334556777899999999999999999999997654 499999999832110
Q ss_pred ------------------------chhHHHhhcCCchHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCchhHHHHH
Q 001588 960 ------------------------NEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARV 1015 (1049)
Q Consensus 960 ------------------------~e~L~~La~D~~GNyVVQklLd~~dd~qRe~ILseLk~~L~~L~~~~yGk~IV~kl 1015 (1049)
.+.+.....|+++++|.|.|+...-...- . +++|...+.-++..++|++-+..+
T Consensus 772 kd~~lt~Vl~~~~~gpmfiikvi~~p~iel~f~dQf~kvvrq~il~~~a~~na-r-v~~LleevgliSasksgs~s~q~~ 849 (1007)
T KOG4574|consen 772 KDSALTEVLTEANYGPMFIIKVITKPTIELAFRDQFIKVVRQVILNSPAVSNA-R-VQRLLEEVGLISASKSGSQSIQMH 849 (1007)
T ss_pred ccchhhhhhhhhccccceeeeeeccccchHHHHHHHHHHHHHHHHhcCCccHH-H-HHHHHHHHhhhccccchhHHHHhh
Confidence 13355667889999999999887633221 1 155666667778889999887666
Q ss_pred HHHHHcCCCcH
Q 001588 1016 EKLVAAGGIYL 1026 (1049)
Q Consensus 1016 Eklv~~ge~R~ 1026 (1049)
.+....+..+.
T Consensus 850 ~sss~~~~~qr 860 (1007)
T KOG4574|consen 850 ISSSKTPFAQR 860 (1007)
T ss_pred hccCCcccccc
Confidence 66655555533
No 15
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=99.33 E-value=8.5e-13 Score=157.03 Aligned_cols=230 Identities=16% Similarity=0.213 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCchHHHHHHhhCChhHHHHHHHHHHhhHHHhhcCCCCchHHHHHHhhcCCHHHHHHH
Q 001588 798 LDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIM 877 (1049)
Q Consensus 798 ~eqr~~Lv~EL~~~I~eLvkDqnGNhVIQKlLE~lp~e~~e~Iis~L~g~iveLsthkyGS~VIQklLe~~~d~~~r~~L 877 (1049)
..+...++-+..+...++-.|..||-|+||++|......++.+......++..+..|++|.++.|++++....+.+...+
T Consensus 534 ~pEied~ai~mLDe~~elsSdylGNtVvqkfFe~sS~~ik~aml~r~s~ylts~gvHknGtw~~qk~ik~a~te~qik~i 613 (1007)
T KOG4574|consen 534 APEIEDLAILMLDELPELSSDYLGNTVVQKFFELSSDIIKDAMLRRGSKYLTSMGVHKNGTWACQKIIKMAFTERQIKLI 613 (1007)
T ss_pred chhHHHHHHHHhccCCcchhhhhcchhhHHHHhhccHHHHHHHHhhhhhhhhhccccccchHHHHHHHHHhhchhhhhee
Confidence 34445555566666777888999999999999999988888888888889999999999999999999999888777767
Q ss_pred HHHHHHHHHHHhcCccccHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCchHHHHHHHHHhcCC--HHHHHHHHHHHhc
Q 001588 878 MDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGT--PAERQALVNEMLG 955 (1049)
Q Consensus 878 IeeI~~~l~~La~DqyGNyVVQ~LLe~~~~~eR~~IIe~L~g~Iv~LS~~K~GSrVVEKcL~~as--~k~Rk~IIkELlg 955 (1049)
+.-...++..++.|+|||||+|.+|..+.++. ..|++.+..+++.+.+.+||++.+.+||+... .++....++.+.-
T Consensus 614 v~g~dpyc~~l~~dqfgnyvaqd~LkF~fp~n-sFVfE~v~s~~~~ivQsrfGsravrAcle~lNa~~e~qsl~~~s~iI 692 (1007)
T KOG4574|consen 614 VRGVDPYCTPLLNDQFGNYVAQDSLKFGFPWN-SFVFESVFSHFWDIVQSRFGSRAVRACLEALNANTEDQSLVRESCII 692 (1007)
T ss_pred eeccCcchhhHHHHhhcceeeeeehhccCccc-hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhccCchhhhhhhhhhhh
Confidence 77777788999999999999999999988776 56799999999999999999999999998633 3443333433331
Q ss_pred CCCCchhHHHhhcCCchHHHHHHHHhcCChHHHH-HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHcCCCcHHHHHHHH
Q 001588 956 SIEENEPLQVMMKDQFANYVVQKVLETCDDQQLE-LILNRIKVHLNALKKYTYGKHIVARVEKLVAAGGIYLPFLYNFF 1033 (1049)
Q Consensus 956 ~~~~~e~L~~La~D~~GNyVVQklLd~~dd~qRe-~ILseLk~~L~~L~~~~yGk~IV~klEklv~~ge~R~~l~~al~ 1033 (1049)
....-++.+.-|-..|.|+||.+....|. .++..+.+++.+|+.++-|.-+|.|+..+....+-|..|+..||
T Consensus 693 -----s~ss~latnsng~llvtw~lDns~~~nrh~~l~~~lt~el~~lC~h~Lgsttv~Kl~n~~qepvs~ekii~hlf 766 (1007)
T KOG4574|consen 693 -----SKSSYLATNSNGLLLVTWLLDNSSLPNRHTILAHGLTKELVMLCFHKLGSTTVLKLLNLRQEPVSREKIIEHLF 766 (1007)
T ss_pred -----hchhhhhhcCccceeeeeecccccccchhhHHhhhhhhccchhhhhhccchhhhhhhhcCCChHHHHHHHHHHh
Confidence 11334566666666666666666555543 23344556666666666666666666655555555666666666
No 16
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains. The FBF-2 protein of Caenorhabditis elegans also has a Puf domain. Both proteins function as translational repressors in early embryonic development by binding sequences in the 3' UTR of target mRNAs [, ]. The same type of repetitive domain has been found in in a number of other proteins from all eukaryotic kingdoms. The Puf proteins characterised to date have been reported to bind to 3'-untranslated region (UTR) sequences encompassing a so-called UGUR tetranucleotide motif and thereby to repress gene expression by affecting mRNA translation or stability. In Saccharomyces cerevisiae (Baker's yeast), five proteins, termed Puf1p to Puf5p, bear six to eight Puf repeats []. Puf3p binds nearly exclusively to cytoplasmic mRNAs that encode mitochondrial proteins; Puf1p and Puf2p interact preferentially with mRNAs encoding membrane-associated proteins; Puf4p preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors; and Puf5p is associated with mRNAs encoding chromatin modifiers and components of the spindle pole body. This suggests the existence of an extensive network of RNA-protein interactions that coordinate the post-transcriptional fate of large sets of cytotopically and functionally related RNAs through each stage of its lifecycle.; GO: 0003723 RNA binding; PDB: 3BX2_A 4DZS_B 3BX3_B 3BWT_A 3GVT_B 3GVO_A 1IB2_A 3Q0N_A 2YJY_A 1M8Z_A ....
Probab=97.78 E-value=7.9e-06 Score=62.98 Aligned_cols=29 Identities=38% Similarity=0.656 Sum_probs=12.2
Q ss_pred HhHHhhhccccccchhhhhcccCCHHHHH
Q 001588 738 PQALSLMTDVFGNYVIQKFFEHGTASQVR 766 (1049)
Q Consensus 738 p~~leL~tD~fGNhVLQKLLe~gs~eqr~ 766 (1049)
+++.+|++|+||||||||+|+++++++++
T Consensus 4 ~~~~~l~~d~~Gn~VvQk~le~~~~~~~~ 32 (35)
T PF00806_consen 4 GNLVELSKDQYGNYVVQKCLEHASPEQRQ 32 (35)
T ss_dssp TTHHHHHTSTTHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHHHhccccCHHHHHHHHHCCHHHHH
Confidence 34444444444444444444444444333
No 17
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains. The FBF-2 protein of Caenorhabditis elegans also has a Puf domain. Both proteins function as translational repressors in early embryonic development by binding sequences in the 3' UTR of target mRNAs [, ]. The same type of repetitive domain has been found in in a number of other proteins from all eukaryotic kingdoms. The Puf proteins characterised to date have been reported to bind to 3'-untranslated region (UTR) sequences encompassing a so-called UGUR tetranucleotide motif and thereby to repress gene expression by affecting mRNA translation or stability. In Saccharomyces cerevisiae (Baker's yeast), five proteins, termed Puf1p to Puf5p, bear six to eight Puf repeats []. Puf3p binds nearly exclusively to cytoplasmic mRNAs that encode mitochondrial proteins; Puf1p and Puf2p interact preferentially with mRNAs encoding membrane-associated proteins; Puf4p preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors; and Puf5p is associated with mRNAs encoding chromatin modifiers and components of the spindle pole body. This suggests the existence of an extensive network of RNA-protein interactions that coordinate the post-transcriptional fate of large sets of cytotopically and functionally related RNAs through each stage of its lifecycle.; GO: 0003723 RNA binding; PDB: 3BX2_A 4DZS_B 3BX3_B 3BWT_A 3GVT_B 3GVO_A 1IB2_A 3Q0N_A 2YJY_A 1M8Z_A ....
Probab=97.61 E-value=4.5e-05 Score=58.77 Aligned_cols=33 Identities=30% Similarity=0.527 Sum_probs=24.3
Q ss_pred HHHHHHHhHhcccccHHHHHHHhhcCHHHHHHH
Q 001588 772 LTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQM 804 (1049)
Q Consensus 772 Lkg~I~eLs~d~yGSrVLQkLLe~~s~eqr~~L 804 (1049)
|.+++.+|+.|+|||||||++|+.++.+++..|
T Consensus 2 i~~~~~~l~~d~~Gn~VvQk~le~~~~~~~~~i 34 (35)
T PF00806_consen 2 IKGNLVELSKDQYGNYVVQKCLEHASPEQRQLI 34 (35)
T ss_dssp HTTTHHHHHTSTTHHHHHHHHHHHSSHHHHHHH
T ss_pred hHHHHHHHHhccccCHHHHHHHHHCCHHHHHhh
Confidence 566777788888888888888877777666554
No 18
>smart00025 Pumilio Pumilio-like repeats. Pumilio-like repeats that bind RNA.
Probab=97.35 E-value=7e-05 Score=56.71 Aligned_cols=28 Identities=46% Similarity=0.857 Sum_probs=10.9
Q ss_pred HHHHHHhcCCCcCHHHHHhhhcCCHHHH
Q 001588 702 GHVVEFSADQYGSRFIQQKLETATTEEK 729 (1049)
Q Consensus 702 GkivELa~Dq~GSRvLQklLe~aS~Eer 729 (1049)
+++.++++|++||++||++|+.++.+++
T Consensus 4 ~~~~~l~~~~~g~~viqk~l~~~~~~~~ 31 (36)
T smart00025 4 GHLLELSKDQYGNRVVQKLLEHASESQR 31 (36)
T ss_pred HHHHHHHhcchhhHHHHHHHHHCCHHHH
Confidence 3333333333333333333333333333
No 19
>smart00025 Pumilio Pumilio-like repeats. Pumilio-like repeats that bind RNA.
Probab=97.24 E-value=0.00022 Score=54.01 Aligned_cols=34 Identities=38% Similarity=0.587 Sum_probs=31.2
Q ss_pred HHHhHHhhhccccccchhhhhcccCCHHHHHHHH
Q 001588 736 IMPQALSLMTDVFGNYVIQKFFEHGTASQVRELA 769 (1049)
Q Consensus 736 I~p~~leL~tD~fGNhVLQKLLe~gs~eqr~~Li 769 (1049)
+.+++.+||+|+||||||||+|++++++++..++
T Consensus 2 ~~~~~~~l~~~~~g~~viqk~l~~~~~~~~~~i~ 35 (36)
T smart00025 2 IKGHLLELSKDQYGNRVVQKLLEHASESQREQII 35 (36)
T ss_pred chHHHHHHHhcchhhHHHHHHHHHCCHHHHHHhh
Confidence 5688999999999999999999999999888775
No 20
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=94.91 E-value=8.1 Score=44.77 Aligned_cols=83 Identities=18% Similarity=0.242 Sum_probs=46.9
Q ss_pred CccccHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCchHHHHHHHHHhcC-----CHHHHHHHHHHHhcCCCCchhHHH
Q 001588 891 DQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFG-----TPAERQALVNEMLGSIEENEPLQV 965 (1049)
Q Consensus 891 DqyGNyVVQ~LLe~~~~~eR~~IIe~L~g~Iv~LS~~K~GSrVVEKcL~~a-----s~k~Rk~IIkELlg~~~~~e~L~~ 965 (1049)
..-|-..+-.+|........+.|++.|...=.+ .+-.|-+++|.+. ++.....|++++
T Consensus 200 ~~~g~~~~a~Iln~~~~~~~~~il~~L~~~d~~-----~a~~Ir~~mF~Fedl~~l~~~~l~~ll~~v------------ 262 (339)
T PRK05686 200 KMGGVKTVAEILNNLDRQTEKTILESLEEEDPE-----LAEKIKDLMFVFEDLVDLDDRSIQRLLREV------------ 262 (339)
T ss_pred ccCcHHHHHHHHhcCCchHHHHHHHHHHhhCHH-----HHHHHHHHhcCHHHHhcCCHHHHHHHHHhC------------
Confidence 344667777888888777777888877754333 3345566666542 223333333333
Q ss_pred hhcCCchHHHHHHHHhcCChHHHHHHHHHHH
Q 001588 966 MMKDQFANYVVQKVLETCDDQQLELILNRIK 996 (1049)
Q Consensus 966 La~D~~GNyVVQklLd~~dd~qRe~ILseLk 996 (1049)
.+-++-.+|..+++..|++|++.+.
T Consensus 263 ------~~~~L~~ALkga~~~~~~~il~nmS 287 (339)
T PRK05686 263 ------DNDVLALALKGASEELREKFLSNMS 287 (339)
T ss_pred ------CHHHHHHHHCCCCHHHHHHHHHhcC
Confidence 3444555555555555555555443
No 21
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=87.01 E-value=67 Score=37.35 Aligned_cols=84 Identities=8% Similarity=0.105 Sum_probs=46.8
Q ss_pred CHHHHHhhhc-CCHHHHHHHHHHHHHhHHhhhccccccchhhhhcccCCHHHHHHHHHHHHHHHHHhHhcccccHHHHHH
Q 001588 714 SRFIQQKLET-ATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKA 792 (1049)
Q Consensus 714 SRvLQklLe~-aS~Eer~~IfeEI~p~~leL~tD~fGNhVLQKLLe~gs~eqr~~Li~~Lkg~I~eLs~d~yGSrVLQkL 792 (1049)
-.++..+|.. ...++.+.|++++.+.-. ..+++.|- ..+++....++....+++..++...--.-+-.++
T Consensus 82 ~~~~~~iL~~~l~~~~a~~il~~i~~~~~--------~~~fe~L~-~ld~~~l~~lL~~EhpqtiA~iLs~l~~~~aa~v 152 (339)
T PRK05686 82 IDYARSLLEKALGEEKADSILERILESLG--------TSGFDFLR-KMDPQQLANFIRNEHPQTIALILSYLKPDQAAEI 152 (339)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHhcccc--------CchHHHHh-cCCHHHHHHHHHhcCHHHHHHHHhCCCHHHHHHH
Confidence 3456666664 455555666666653211 23555333 4466666666666666666665555555555555
Q ss_pred HhhcCHHHHHHHHH
Q 001588 793 IEVVELDQQTQMVK 806 (1049)
Q Consensus 793 Le~~s~eqr~~Lv~ 806 (1049)
|..++.+.+..++.
T Consensus 153 L~~l~~~~~~~v~~ 166 (339)
T PRK05686 153 LSLLPEELRADVMM 166 (339)
T ss_pred HHhCCHHHHHHHHH
Confidence 55555555544443
No 22
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=86.73 E-value=64 Score=36.83 Aligned_cols=48 Identities=15% Similarity=0.199 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHHHHHHHhcC--chHHHHHHHHHhcCCHHHHHHHHHHHh
Q 001588 907 PHERSAIIKKLTGQIVQMSQQ--KFASNVIEKCLSFGTPAERQALVNEML 954 (1049)
Q Consensus 907 ~~eR~~IIe~L~g~Iv~LS~~--K~GSrVVEKcL~~as~k~Rk~IIkELl 954 (1049)
+..+..|.+.+...+..+... -.-..+|+.-+..-+.++-..++....
T Consensus 289 ~~l~~~i~~~i~~~l~~~v~~~~~~i~~~V~~~l~~~~~~~l~~~i~~~v 338 (367)
T PF04286_consen 289 PELREKINRFIENLLERIVESNHIDIGEIVEEKLNSLDDEELEELIESKV 338 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444455555555555544444 222333333334334444444444444
No 23
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=86.35 E-value=73 Score=37.15 Aligned_cols=83 Identities=16% Similarity=0.172 Sum_probs=47.9
Q ss_pred cccHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCchHHHHHHHHHhcC-----CHHHHHHHHHHHhcCCCCchhHHHhh
Q 001588 893 YGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFG-----TPAERQALVNEMLGSIEENEPLQVMM 967 (1049)
Q Consensus 893 yGNyVVQ~LLe~~~~~eR~~IIe~L~g~Iv~LS~~K~GSrVVEKcL~~a-----s~k~Rk~IIkELlg~~~~~e~L~~La 967 (1049)
-|--.+..+|........+.|++.|...=.+ .+-.|-+++|.+. ++...+.|++++
T Consensus 199 gG~~~~a~ILN~~~~~~~~~il~~L~~~dp~-----la~~Ir~~mF~Fedl~~ld~~~l~~llrev-------------- 259 (338)
T TIGR00207 199 GGVRAVAEIINLMDRKTEKTIITSLEEFDPE-----LAEEIKKEMFVFEDIVDLDDRSIQRVLREV-------------- 259 (338)
T ss_pred ChHHHHHHHHHhCCchHHHHHHHHHHHhCHH-----HHHHHHHHccCHHHHhcCCHHHHHHHHHhC--------------
Confidence 4667788889888888888888887654333 3355556666542 223333333333
Q ss_pred cCCchHHHHHHHHhcCChHHHHHHHHHHHHH
Q 001588 968 KDQFANYVVQKVLETCDDQQLELILNRIKVH 998 (1049)
Q Consensus 968 ~D~~GNyVVQklLd~~dd~qRe~ILseLk~~ 998 (1049)
-+-++-.+|..+++..|++|++.+...
T Consensus 260 ----~~~~L~~ALkga~~e~~~~il~nmS~R 286 (338)
T TIGR00207 260 ----DSEDLLLALKGAEQPLREKFLNNMSQR 286 (338)
T ss_pred ----CHHHHHHHHCcCCHHHHHHHHHHhhHH
Confidence 344445555556666666555555433
No 24
>PF11573 Med23: Mediator complex subunit 23; InterPro: IPR021629 Med23 is one of the subunits of the Tail portion of the Mediator complex that regulates RNA polymerase II activity. Med23 is required for heat-shock-specific gene expression, and has been shown to mediate transcriptional activation of E1A in mice.
Probab=85.17 E-value=38 Score=45.89 Aligned_cols=287 Identities=14% Similarity=0.114 Sum_probs=139.6
Q ss_pred hcccCCHHHHHHHHHHHHHHHHHhHhcccccHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhcc--------CCCchHHHH
Q 001588 756 FFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRD--------QNGNHVIQK 827 (1049)
Q Consensus 756 LLe~gs~eqr~~Li~~Lkg~I~eLs~d~yGSrVLQkLLe~~s~eqr~~Lv~EL~~~I~eLvkD--------qnGNhVIQK 827 (1049)
++...++|+++..++.+...+......++-.++++.+..++..... ....+...+..+.++ +..=.+|+|
T Consensus 53 ~~~~~~~Ee~~~~ik~~l~~i~~~~~~~~~~~l~d~L~~~v~~~~i--~ar~vCe~lL~~~~l~~~~~~~W~~~F~lIrk 130 (1341)
T PF11573_consen 53 MMSSMSEEEKESCIKQYLKYIHSQSHPRRYEFLFDLLETAVNNGII--PARLVCEELLSSEKLFYLNSRFWQEKFKLIRK 130 (1341)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCCC--ChHHHHHHHhcccchhhhhhHHHHHHHHHHHH
Confidence 4445677888888888888777777777777777766655432210 001122222211111 112257888
Q ss_pred HHhhCChhHHHHHHHHHHhhHHHhhc---------CCCCchHHHHHHhhcCC----------------------HHHHHH
Q 001588 828 CIECVPEDAIQFIVLTFYDQVVTLST---------HPYGCRVIQRVLEHCHD----------------------EKTQSI 876 (1049)
Q Consensus 828 lLE~lp~e~~e~Iis~L~g~iveLst---------hkyGS~VIQklLe~~~d----------------------~~~r~~ 876 (1049)
||..++-+-++.|++.+..++..+-. -...+.||+.+++.-.. +.....
T Consensus 131 iI~~VDYKGvR~Ilk~~~eK~~~iP~~~~~~~~~~l~~~~~vi~~ilDR~~~LlP~y~~~nEi~r~~~~~~~~~~w~L~~ 210 (1341)
T PF11573_consen 131 IIHGVDYKGVREILKICLEKMQQIPSSLSPEQLPQLLAVEEVIEHILDRNACLLPAYFAVNEIRRGYPKQAAMPPWRLAE 210 (1341)
T ss_pred HhcccCcHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHHhhCccccccCcHHHHH
Confidence 88888777777776666554333221 11245666666663211 001112
Q ss_pred HHHHHHHHHHHHh------cCccccHHHHHH---------HhhCCh------------hhHHHHHHHHHHHHHHHhcCch
Q 001588 877 MMDEILQSVCMLA------QDQYGNYVVQHV---------LEHGKP------------HERSAIIKKLTGQIVQMSQQKF 929 (1049)
Q Consensus 877 LIeeI~~~l~~La------~DqyGNyVVQ~L---------Le~~~~------------~eR~~IIe~L~g~Iv~LS~~K~ 929 (1049)
.+.++.+.+..+| -.++=-.||.|. .+.... -.+.++.+.-..-+.-+..+.+
T Consensus 211 ~~s~~~~~Fr~~A~mvs~~gr~~l~Piv~h~~~~~~~~~~wkl~~~~~~~~~k~~~~LPY~~el~~~q~~lL~~vL~Qp~ 290 (1341)
T PF11573_consen 211 KLSNFIDSFRPLAQMVSIIGRPSLLPIVGHSSYAPQLSNWWKLDPNTLKFSLKGHHTLPYRPELLEPQTRLLYYVLRQPY 290 (1341)
T ss_pred HHHHHHHhhhhHHHHHhhhcccceecccCCCCccccCCchhhcCccceeeeccccCCCCCChHHcchHHHHHHHHHcCcc
Confidence 2333333332222 111111111110 000000 0122233333334555567778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc-----------CCCCchhHHHhhcCCchHHHHHHHHhcCChHHHHHHHHHHHHH
Q 001588 930 ASNVIEKCLSFGTPAERQALVNEMLG-----------SIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVH 998 (1049)
Q Consensus 930 GSrVVEKcL~~as~k~Rk~IIkELlg-----------~~~~~e~L~~La~D~~GNyVVQklLd~~dd~qRe~ILseLk~~ 998 (1049)
|--.|..+|.....++|...+++++. ..++++......-+-+.+-||.-++-.+- ....|++.|+..
T Consensus 291 srd~v~~~l~~~~~k~~~~~~ee~l~~li~~aM~~~e~~~~~~~~~~~~W~hls~~viy~~l~~~i--~F~~~v~~L~~k 368 (1341)
T PF11573_consen 291 SRDMVCSMLGLQQQKQRCPALEELLVDLIIEAMEESESEDENEPINRWQWLHLSSQVIYFMLFQFI--SFPDFVKKLHEK 368 (1341)
T ss_pred hHHHHHHHhcccccCccchHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHH
Confidence 87788877776655555555444431 11122333333344444555555554431 134567777766
Q ss_pred HHHHhhcCCchhHHHHHHHHHHcCCC-cHHHHH---HHHHhhhhccc-ccccCC
Q 001588 999 LNALKKYTYGKHIVARVEKLVAAGGI-YLPFLY---NFFSSFAVLSV-QNAWFF 1047 (1049)
Q Consensus 999 L~~L~~~~yGk~IV~klEklv~~ge~-R~~l~~---al~~af~~~~~-~~~~~~ 1047 (1049)
+.. ..+..|+.=|.++.--+..+.. ++.+-. -+.+.|..|.+ +..|--
T Consensus 369 L~~-~~~~r~Rd~vMWvllQ~is~~i~~n~lsd~~~~v~~L~~~Ly~e~e~l~~ 421 (1341)
T PF11573_consen 369 LTG-RNYRRGRDHVMWVLLQFISGSIQKNPLSDDFQPVLDLYNLLYPEKEPLPV 421 (1341)
T ss_pred Hhc-CceeeccchhHHHHHHHHhhhhccccchhhHHHHHHHHHHhccCCCCCCC
Confidence 666 5677788666666554444444 333322 24556666666 555543
No 25
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=84.61 E-value=1.1e+02 Score=37.57 Aligned_cols=93 Identities=15% Similarity=0.138 Sum_probs=39.7
Q ss_pred hhHHHHHhhhcCccccchHHHHHHHHHHHh-cCCCcCHHHHHhhhcCCHHHHHHHHHHHHHhHHhh---hccccccchhh
Q 001588 679 FASSLLDEFKSNKTKCFELSEIAGHVVEFS-ADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSL---MTDVFGNYVIQ 754 (1049)
Q Consensus 679 ~~s~LLeEf~sneer~~~LseI~GkivELa-~Dq~GSRvLQklLe~aS~Eer~~IfeEI~p~~leL---~tD~fGNhVLQ 754 (1049)
+...+|+++....++--.|.+++..+.... .+..-..+|=.+|...+.|+.+.+.+-|..-+..+ ...+.---+++
T Consensus 4 ~~~~~l~~l~~~~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~ 83 (503)
T PF10508_consen 4 WINELLEELSSKAERLEALPELKTELSSSPFLERLPEPVLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQ 83 (503)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhhhhHHHhchHHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 345566666555443333555554332211 11222223434455556666544432222211111 00122223455
Q ss_pred hhcccCCHHHHHHHHHH
Q 001588 755 KFFEHGTASQVRELADQ 771 (1049)
Q Consensus 755 KLLe~gs~eqr~~Li~~ 771 (1049)
+.|.+..+..+...+..
T Consensus 84 ~gL~h~~~~Vr~l~l~~ 100 (503)
T PF10508_consen 84 RGLTHPSPKVRRLALKQ 100 (503)
T ss_pred HHhcCCCHHHHHHHHHH
Confidence 66666666555554444
No 26
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=80.99 E-value=5.5 Score=41.01 Aligned_cols=72 Identities=10% Similarity=0.185 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHhcCCHH---HHHHHHHHHhcC--CCCchhHHHhhcCCchHHHHHHHHhcCC
Q 001588 913 IIKKLTGQIVQMSQQKFASNVIEKCLSFGTPA---ERQALVNEMLGS--IEENEPLQVMMKDQFANYVVQKVLETCD 984 (1049)
Q Consensus 913 IIe~L~g~Iv~LS~~K~GSrVVEKcL~~as~k---~Rk~IIkELlg~--~~~~e~L~~La~D~~GNyVVQklLd~~d 984 (1049)
|++.+..+..+|..+++|+.+|-.+|..+.-+ ..+.|++.+... .++.+.=..+..+++|.+++.+++....
T Consensus 58 Ll~~i~~~~~~ll~~~~g~~~i~eiL~~~~gdk~~a~~Aia~~~~~~~~~~~~~~e~H~i~~p~~~r~lK~Liq~~~ 134 (148)
T PF08144_consen 58 LLEAIAENAEELLSSSFGCQFITEILLSATGDKSAALEAIASLAAEPLFPGDIDEEYHLIEHPFGHRMLKKLIQGDK 134 (148)
T ss_pred HHHHHHHhHHHHHhcCcccHHHHHHHhccCccHHHHHHHHHHHHhhccCCCCCcCccchhcCchHHHHHHHHHHCCC
Confidence 33334445555555666666665555554211 111222222211 0011111357789999999998886653
No 27
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=76.43 E-value=1.4e+02 Score=35.05 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=17.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 001588 931 SNVIEKCLSFGTPAERQALVNEM 953 (1049)
Q Consensus 931 SrVVEKcL~~as~k~Rk~IIkEL 953 (1049)
=.|+|+||...++..|..-+...
T Consensus 276 L~v~e~cFn~~d~~~k~~A~~aW 298 (372)
T PF12231_consen 276 LKVPEKCFNSSDPQVKIQAFKAW 298 (372)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHH
Confidence 35889999998887776655544
No 28
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.16 E-value=1.4e+02 Score=38.44 Aligned_cols=26 Identities=23% Similarity=0.114 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhHhcccccHHHHHHHh
Q 001588 768 LADQLTGHVLTLSLQMYGCRVIQKAIE 794 (1049)
Q Consensus 768 Li~~Lkg~I~eLs~d~yGSrVLQkLLe 794 (1049)
++..+.+.|.+|+.| .-..|-.|++-
T Consensus 139 mardlapeVe~Ll~~-~~~~irKKA~L 164 (866)
T KOG1062|consen 139 MARDLAPEVERLLQH-RDPYIRKKAAL 164 (866)
T ss_pred HhHHhhHHHHHHHhC-CCHHHHHHHHH
Confidence 444445555555555 23334444443
No 29
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=74.13 E-value=8.6 Score=39.62 Aligned_cols=60 Identities=17% Similarity=0.294 Sum_probs=41.5
Q ss_pred hhHHHhhcCCchHHHHHHHHhcCChHH---HHHHHHHHHHH--------HHHHhhcCCchhHHHHHHHHHHcCC
Q 001588 961 EPLQVMMKDQFANYVVQKVLETCDDQQ---LELILNRIKVH--------LNALKKYTYGKHIVARVEKLVAAGG 1023 (1049)
Q Consensus 961 e~L~~La~D~~GNyVVQklLd~~dd~q---Re~ILseLk~~--------L~~L~~~~yGk~IV~klEklv~~ge 1023 (1049)
++...|+.+.+|..||..+|..++.+. .+.|++.+... -.-+..+++|++++ .+|+..+.
T Consensus 64 ~~~~~ll~~~~g~~~i~eiL~~~~gdk~~a~~Aia~~~~~~~~~~~~~~e~H~i~~p~~~r~l---K~Liq~~~ 134 (148)
T PF08144_consen 64 ENAEELLSSSFGCQFITEILLSATGDKSAALEAIASLAAEPLFPGDIDEEYHLIEHPFGHRML---KKLIQGDK 134 (148)
T ss_pred HhHHHHHhcCcccHHHHHHHhccCccHHHHHHHHHHHHhhccCCCCCcCccchhcCchHHHHH---HHHHHCCC
Confidence 456789999999999999999985443 34555555443 23466888888885 45555443
No 30
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=72.48 E-value=87 Score=38.55 Aligned_cols=77 Identities=9% Similarity=0.102 Sum_probs=44.2
Q ss_pred HHHHHHHHHhHHhhhccccccchhhhhcccCCHHHHHHHHHHHHHHHHHhHhcccccHHHHHHHhhcCHHHHHHHHH
Q 001588 730 NMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVK 806 (1049)
Q Consensus 730 ~~IfeEI~p~~leL~tD~fGNhVLQKLLe~gs~eqr~~Li~~Lkg~I~eLs~d~yGSrVLQkLLe~~s~eqr~~Lv~ 806 (1049)
+.|..--..-++.++....---.+-.++..-....+..|++.++.++..+...+.+-+-+-+++..-..++.-.+++
T Consensus 46 ~si~~lyisg~~~~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en~n~~l~~lWe 122 (711)
T COG1747 46 NSIIALYISGIISLSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKENGNEQLYSLWE 122 (711)
T ss_pred hhhHHHHHHHHHHhhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCchhhHHHHH
Confidence 34444444445555554444444445666656667777788888887777777766665555553334444444444
No 31
>PRK07194 fliG flagellar motor switch protein G; Reviewed
Probab=70.08 E-value=2.2e+02 Score=33.18 Aligned_cols=112 Identities=12% Similarity=0.106 Sum_probs=48.1
Q ss_pred hhcCCHHHHHHHHHHHHHhHHhhhcccccc-chhhhhcccC-CHHHHHHHHHHHHHHHHHhHhcccccHHHHHHHhhcCH
Q 001588 721 LETATTEEKNMVFQEIMPQALSLMTDVFGN-YVIQKFFEHG-TASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVEL 798 (1049)
Q Consensus 721 Le~aS~Eer~~IfeEI~p~~leL~tD~fGN-hVLQKLLe~g-s~eqr~~Li~~Lkg~I~eLs~d~yGSrVLQkLLe~~s~ 798 (1049)
|..-+.++.+.|++++...+..-..-..|. -.++++|+.+ .++.-..|++.+... . ....++ .|..+++
T Consensus 47 l~~v~~~~~~~vl~eF~~~~~~~~~~~~g~~~~~~~~L~~alg~~~a~~il~~i~~~-------~-~~~~~~-~L~~~~~ 117 (334)
T PRK07194 47 LSGIKVDQARQVLQRFFDDYREQSGINGASRSYLQRTLNKALGGDIAKSLINSIYGD-------E-IRHRMQ-RLQWVDP 117 (334)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCHHHHHHHHHHHhcc-------c-cCchHH-HHHCCCH
Confidence 344566666666666655543322211121 1233444332 233333444433221 1 112333 3455566
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCchHHHHHHhhCChhHHHHHH
Q 001588 799 DQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIV 841 (1049)
Q Consensus 799 eqr~~Lv~EL~~~I~eLvkDqnGNhVIQKlLE~lp~e~~e~Ii 841 (1049)
++...++..=.+....++-..-+.-.--+++..++++.+..|+
T Consensus 118 ~~la~~l~~EhPQ~iAiiL~~L~~e~AA~VL~~Lpe~~~~~v~ 160 (334)
T PRK07194 118 QQLARLIANEHLQMQAVFLAFLPPESAAAVLKYLPEDRQDDIL 160 (334)
T ss_pred HHHHHHHHccCHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHH
Confidence 6555555443444444433333334444555555554444443
No 32
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=68.54 E-value=2.4e+02 Score=32.98 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=13.6
Q ss_pred hhcCCHHHHHHHHHHHHHhHHhh
Q 001588 721 LETATTEEKNMVFQEIMPQALSL 743 (1049)
Q Consensus 721 Le~aS~Eer~~IfeEI~p~~leL 743 (1049)
|..-+.++.+.|++++...+..-
T Consensus 49 l~~v~~~~~~~vl~eF~~~~~~~ 71 (338)
T TIGR00207 49 VTQIDNQQKDDVLEEFEQIAEAQ 71 (338)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhc
Confidence 34456666666766666655443
No 33
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.77 E-value=3.8e+02 Score=34.59 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=28.0
Q ss_pred HHHHhHHhhhccccccchhhhhcccC------CHHHHHHHHHHHHH
Q 001588 735 EIMPQALSLMTDVFGNYVIQKFFEHG------TASQVRELADQLTG 774 (1049)
Q Consensus 735 EI~p~~leL~tD~fGNhVLQKLLe~g------s~eqr~~Li~~Lkg 774 (1049)
.+.|.|.+|+++.--|.|+-|+|+.- .|...+.+++-|..
T Consensus 218 ~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~ 263 (877)
T KOG1059|consen 218 QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITE 263 (877)
T ss_pred cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHH
Confidence 35578999999999999999998762 34444555554443
No 34
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=66.40 E-value=1.5e+02 Score=38.25 Aligned_cols=45 Identities=7% Similarity=0.114 Sum_probs=36.5
Q ss_pred hccCCCchHHHHHHhhCChhHHHHHHHHHHhhHHHhhcCCCCchH
Q 001588 816 VRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRV 860 (1049)
Q Consensus 816 vkDqnGNhVIQKlLE~lp~e~~e~Iis~L~g~iveLsthkyGS~V 860 (1049)
+.+-.+++..|-|+++-....+..+++.+..++..++.|.+.+.-
T Consensus 175 lY~~ia~~aFqFCLkYqRktEFRrLCe~LR~HL~~i~k~~nq~~~ 219 (988)
T KOG2072|consen 175 LYHDIARKAFQFCLKYQRKTEFRRLCELLRMHLDNINKHQNQSTR 219 (988)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCcC
Confidence 445567788899999888888889999999999999988876543
No 35
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=65.41 E-value=3e+02 Score=33.03 Aligned_cols=15 Identities=20% Similarity=0.078 Sum_probs=7.6
Q ss_pred HHHHhcCCCcCHHHH
Q 001588 704 VVEFSADQYGSRFIQ 718 (1049)
Q Consensus 704 ivELa~Dq~GSRvLQ 718 (1049)
+..||++-.-+|+..
T Consensus 85 lp~fc~~d~~~rv~d 99 (460)
T KOG2213|consen 85 LPLFCKGDALSRVND 99 (460)
T ss_pred cchhccCchhhhhHH
Confidence 445565544455443
No 36
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.30 E-value=1.3e+02 Score=38.81 Aligned_cols=53 Identities=25% Similarity=0.328 Sum_probs=33.9
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHHHHH----hcCccccHHHHHHHhhCChhhHH
Q 001588 859 RVIQRVLEHCHDEKTQSIMMDEILQSVCML----AQDQYGNYVVQHVLEHGKPHERS 911 (1049)
Q Consensus 859 ~VIQklLe~~~d~~~r~~LIeeI~~~l~~L----a~DqyGNyVVQ~LLe~~~~~eR~ 911 (1049)
++++.+++..........-+..|++.+..| +.|.+|-|++++++++-++..-.
T Consensus 702 rLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~Dh~GF~LLn~i~~~~~~~~~~ 758 (960)
T KOG1992|consen 702 RLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKANDHHGFYLLNTIIESIPPNELA 758 (960)
T ss_pred HHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccchhHHHHHHHHHhcCCHhhhh
Confidence 677888877543222112234455554444 57999999999999988765433
No 37
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=64.24 E-value=1.3e+02 Score=37.68 Aligned_cols=108 Identities=16% Similarity=0.148 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhcC--CCcCHHHH---HhhhcCCHHHHHHHHHHHHHhHHhhhccccccchhhhhc--ccCCHHHHHHHH
Q 001588 697 LSEIAGHVVEFSAD--QYGSRFIQ---QKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFF--EHGTASQVRELA 769 (1049)
Q Consensus 697 LseI~GkivELa~D--q~GSRvLQ---klLe~aS~Eer~~IfeEI~p~~leL~tD~fGNhVLQKLL--e~gs~eqr~~Li 769 (1049)
..-|++ +..+|+| .+-+|+.. ++|......|+..|-+.+...+..=.....+..+-| +. +.+.+..|..++
T Consensus 77 ~~aik~-lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~-i~~~~~~de~~Re~~l 154 (556)
T PF05918_consen 77 KQAIKG-LPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQ-IESSKSGDEQVRERAL 154 (556)
T ss_dssp HHHHHH-GGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HH---HS-HHHHHHHH
T ss_pred HHHHHh-HHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHH-HHhcccCchHHHHHHH
Confidence 333443 6677776 35566544 466666666666655555443321111111111111 11 234455677777
Q ss_pred HHHHHHHHHhHhcccc---------cHHHHHHHhhcCHHHHHHHHH
Q 001588 770 DQLTGHVLTLSLQMYG---------CRVIQKAIEVVELDQQTQMVK 806 (1049)
Q Consensus 770 ~~Lkg~I~eLs~d~yG---------SrVLQkLLe~~s~eqr~~Lv~ 806 (1049)
+.|..++..|-..-.- ..+|.++|+-++.++...++.
T Consensus 155 kFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~ 200 (556)
T PF05918_consen 155 KFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMS 200 (556)
T ss_dssp HHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHH
T ss_pred HHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 7777666655433322 334555555556655554443
No 38
>COG1536 FliG Flagellar motor switch protein [Cell motility and secretion]
Probab=63.82 E-value=3e+02 Score=32.40 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=20.7
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh
Q 001588 972 ANYVVQKVLETCDDQQLELILNRIKVHLNALK 1003 (1049)
Q Consensus 972 GNyVVQklLd~~dd~qRe~ILseLk~~L~~L~ 1003 (1049)
.+.++...|..+++..|++|++.+.+...++.
T Consensus 263 ~~~~La~aLkg~~~~lrekilsnmskR~~e~i 294 (339)
T COG1536 263 DKEDLAIALKGASEELREKILSNMSKRAAEML 294 (339)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHhccHHHHHHH
Confidence 56666667777777777777776655554443
No 39
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.46 E-value=2.9e+02 Score=34.30 Aligned_cols=171 Identities=18% Similarity=0.231 Sum_probs=79.7
Q ss_pred hHhcccccHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhccCCCchHHHHHH-----hhCChhHHHHHHHH-HHhhHHHhh
Q 001588 779 LSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCI-----ECVPEDAIQFIVLT-FYDQVVTLS 852 (1049)
Q Consensus 779 Ls~d~yGSrVLQkLLe~~s~eqr~~Lv~EL~~~I~eLvkDqnGNhVIQKlL-----E~lp~e~~e~Iis~-L~g~iveLs 852 (1049)
+++.+...++|-.+.+...+.-...-+.++.+-+..|+.+..-..+.-.|- --.+.+.++.+++. +..+++++.
T Consensus 209 ~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL 288 (514)
T KOG0166|consen 209 LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLL 288 (514)
T ss_pred hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHH
Confidence 445555666666666555433333344555555555555444333322221 12344555555543 667777877
Q ss_pred cCCCCchH---HHHHHh--hcCCHHHHHHHHHHHHHHHHHHhcCcc-------ccHHHHHHHhhCChhhHHHHHHH-HHH
Q 001588 853 THPYGCRV---IQRVLE--HCHDEKTQSIMMDEILQSVCMLAQDQY-------GNYVVQHVLEHGKPHERSAIIKK-LTG 919 (1049)
Q Consensus 853 thkyGS~V---IQklLe--~~~d~~~r~~LIeeI~~~l~~La~Dqy-------GNyVVQ~LLe~~~~~eR~~IIe~-L~g 919 (1049)
.|.-+.-+ +..+-. .+.+.+++..|-...++.+..|....+ .+++|..+.. +..++...|++. |.+
T Consensus 289 ~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA-G~~~qiqaVida~l~p 367 (514)
T KOG0166|consen 289 GHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA-GNQEQIQAVIDANLIP 367 (514)
T ss_pred cCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc-CCHHHHHHHHHcccHH
Confidence 77765443 222211 223333333333345555666655332 2233333322 445555555444 434
Q ss_pred HHHHHhc------CchHHHHHHHHHhcCCHHHHHHHH
Q 001588 920 QIVQMSQ------QKFASNVIEKCLSFGTPAERQALV 950 (1049)
Q Consensus 920 ~Iv~LS~------~K~GSrVVEKcL~~as~k~Rk~II 950 (1049)
.++.+.+ .|-+..+|--+...+++++-+.++
T Consensus 368 ~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv 404 (514)
T KOG0166|consen 368 VLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLV 404 (514)
T ss_pred HHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 4433322 333555555555555554444433
No 40
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=58.15 E-value=3.7e+02 Score=31.66 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=57.4
Q ss_pred cHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCchHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCchhHHHhhcCC-chH
Q 001588 895 NYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQ-FAN 973 (1049)
Q Consensus 895 NyVVQ~LLe~~~~~eR~~IIe~L~g~Iv~LS~~K~GSrVVEKcL~~as~k~Rk~IIkELlg~~~~~e~L~~La~D~-~GN 973 (1049)
..++..++...+ +.|..++..+.+--..+..++.-++.+..+++...... ++++.+. ++|.+|+.++ .+-
T Consensus 178 ~~l~~~l~~~~k-~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~--~~~~~~~------~~L~~mi~~~~~~~ 248 (372)
T PF12231_consen 178 PILFPDLLSSAK-DIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG--KLIQLYC------ERLKEMIKSKDEYK 248 (372)
T ss_pred HHHHHHHhhcch-HHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc--cHHHHHH------HHHHHHHhCcCCcc
Confidence 356666665433 34444444444444555567777888888777544333 5666665 5677787773 333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHcCCC
Q 001588 974 YVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGGI 1024 (1049)
Q Consensus 974 yVVQklLd~~dd~qRe~ILseLk~~L~~L~~~~yGk~IV~klEklv~~ge~ 1024 (1049)
+| .++|.. ++--|.... +....+.+..+...|+|+..++-
T Consensus 249 ~a-~~iW~~--------~i~LL~~~~--~~~w~~~n~wL~v~e~cFn~~d~ 288 (372)
T PF12231_consen 249 LA-MQIWSV--------VILLLGSSR--LDSWEHLNEWLKVPEKCFNSSDP 288 (372)
T ss_pred hH-HHHHHH--------HHHHhCCch--hhccHhHhHHHHHHHHHhcCCCH
Confidence 33 333332 111111111 44444555555555666665543
No 41
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=55.71 E-value=4.2e+02 Score=31.54 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=23.4
Q ss_pred ccHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 001588 785 GCRVIQKAIEVVELDQQTQMVKELDGHIM 813 (1049)
Q Consensus 785 GSrVLQkLLe~~s~eqr~~Lv~EL~~~I~ 813 (1049)
.++|+..++..++.+++.++++++..-+.
T Consensus 117 ~~~l~~~iv~~l~~~~q~~~~~~~~~lf~ 145 (415)
T PF12460_consen 117 LSRLINLIVRSLSPEKQQEILDELYSLFL 145 (415)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHc
Confidence 36888888999999999999887776554
No 42
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=54.29 E-value=17 Score=46.86 Aligned_cols=93 Identities=11% Similarity=0.214 Sum_probs=53.0
Q ss_pred HHHHHhcCCCcCHHHHHhhhcCCHHHHHHHHHHHHHhH-----------------Hhhh----ccccccchhhhhcccCC
Q 001588 703 HVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA-----------------LSLM----TDVFGNYVIQKFFEHGT 761 (1049)
Q Consensus 703 kivELa~Dq~GSRvLQklLe~aS~Eer~~IfeEI~p~~-----------------leL~----tD~fGNhVLQKLLe~gs 761 (1049)
.++.|..=..|=++|-+++...+.+++..|+.-|.-++ ..+. .|.|-..|+..|+.+..
T Consensus 576 ~fi~~ls~~KGkkll~R~~~~l~~~q~~~il~~i~~~l~~l~vv~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~~i~ 655 (808)
T PF09770_consen 576 PFISILSVRKGKKLLPRIFPFLSQEQRLTILTMIFRHLDQLDVVRRASYTDGEDQPLLIKRDDIELFLQAVMPPLMNVIN 655 (808)
T ss_dssp HHHHHTTSHHHHHHHHHHGGGS-HHHHHHHHHHHHHTH-----------------HHHHHTTTTT--GGGGHHHS-HHHH
T ss_pred cceEEEeeCChheeHHhhhhhCChhHHHHHHHHHHHHhhhhcccccccccccccCccccchHhHHHHHHHHHHHHHHHHH
Confidence 34555555566677777888888888878877777776 2222 24455555555555444
Q ss_pred HHHHHHHHHHH-----HHHHHHhHhcccccHHHHHHHhh
Q 001588 762 ASQVRELADQL-----TGHVLTLSLQMYGCRVIQKAIEV 795 (1049)
Q Consensus 762 ~eqr~~Li~~L-----kg~I~eLs~d~yGSrVLQkLLe~ 795 (1049)
......|+..+ ..++..+++.++|.-+|-.+|..
T Consensus 656 ~~~~~~i~gll~~~~~~~~~~~i~~tk~Gls~lt~llsR 694 (808)
T PF09770_consen 656 EAPFNEIIGLLGLLINNNNVSFIAQTKFGLSLLTMLLSR 694 (808)
T ss_dssp HHHHHHHTTSTTT-S--HHHHHHHTSHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhCCCceEEEEChHHHHHHHHHHHH
Confidence 33333332221 24566677777777777777753
No 43
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.51 E-value=5e+02 Score=35.20 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=15.1
Q ss_pred hHHHhhcCCchHHHHHHHHh
Q 001588 962 PLQVMMKDQFANYVVQKVLE 981 (1049)
Q Consensus 962 ~L~~La~D~~GNyVVQklLd 981 (1049)
.|.+.+.-.||--.|+.++.
T Consensus 891 ~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 891 LLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHHHhCHHHHHhhCH
Confidence 46677777788888887777
No 44
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=53.37 E-value=4.7e+02 Score=31.39 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhHhcccc
Q 001588 767 ELADQLTGHVLTLSLQMYG 785 (1049)
Q Consensus 767 ~Li~~Lkg~I~eLs~d~yG 785 (1049)
++++.+.+.+..+..|+..
T Consensus 110 ~~~~~l~~~v~~ll~~~~~ 128 (526)
T PF01602_consen 110 EMAEPLIPDVIKLLSDPSP 128 (526)
T ss_dssp HHHHHHHHHHHHHHHSSSH
T ss_pred chhhHHHHHHHHHhcCCch
Confidence 3444555556666666554
No 45
>PF11510 FA_FANCE: Fanconi Anaemia group E protein FANCE; InterPro: IPR021025 Fanconi Anaemia (FA) is a cancer predisposition disorder characterised by chromosome fragility and hypersensitivity to genotoxic agents that suggest defects in the molecular mechanisms of DNA damage signalling and repair. In response to DNA damage, the FA core complex monoubiquitinates the FANCD2 protein. This ubiquitination targets FANCD2 to nuclear foci where it interacts with a variety of DNA repair proteins. The FA group E protein (FANCE) has an important role in DNA repair, functioning as the FANCD2-binding protein in the FA core complex []. This entry represents the C-terminal domain of FANCE, which consists predominantly of helices and does not contain any beta-strands. This domain folds in a continuous right-handed solenoidal pattern from its N terminus to its C terminus. ; PDB: 2ILR_A.
Probab=53.10 E-value=3.3e+02 Score=31.00 Aligned_cols=77 Identities=21% Similarity=0.330 Sum_probs=34.4
Q ss_pred chHHHHHH-hhcCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHhhCC---hhhHHHHHHHHHHHHHHHhcCchHHHH
Q 001588 858 CRVIQRVL-EHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGK---PHERSAIIKKLTGQIVQMSQQKFASNV 933 (1049)
Q Consensus 858 S~VIQklL-e~~~d~~~r~~LIeeI~~~l~~La~DqyGNyVVQ~LLe~~~---~~eR~~IIe~L~g~Iv~LS~~K~GSrV 933 (1049)
+.+|-+++ +.|-+++.+..++..+. .+.-+..---|+|.+++... ++....+++.|.++-..++.+.--+++
T Consensus 145 ~eLl~rlvk~~~l~p~~~~l~l~~~L----~~~W~E~~~~Vlq~lL~~k~~l~~~~~~~l~~~L~~~a~~~skSlkFakL 220 (263)
T PF11510_consen 145 CELLCRLVKKECLEPDHRLLLLRQIL----ELVWNEETFLVLQSLLERKVELSQELFSLLVELLCEQAPQFSKSLKFAKL 220 (263)
T ss_dssp HHHHHHHHH-TTS-HHHHHHHHHHHH----HS---HHHHHHHHHHHTT-----HHHHHHHHHHHH--------SHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHH----hCcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhcchHHHHH
Confidence 44566666 55656666655555544 33334444568888888654 333334455555554455544444444
Q ss_pred HHHHH
Q 001588 934 IEKCL 938 (1049)
Q Consensus 934 VEKcL 938 (1049)
+-.++
T Consensus 221 lLtvl 225 (263)
T PF11510_consen 221 LLTVL 225 (263)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 46
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.95 E-value=6.5e+02 Score=32.61 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=33.5
Q ss_pred HHHHHHHhHhcccccHHHHHHHhhcCHH--HHHHHHHHHHHHHHHHhccCCCchHHHHHHh
Q 001588 772 LTGHVLTLSLQMYGCRVIQKAIEVVELD--QQTQMVKELDGHIMRCVRDQNGNHVIQKCIE 830 (1049)
Q Consensus 772 Lkg~I~eLs~d~yGSrVLQkLLe~~s~e--qr~~Lv~EL~~~I~eLvkDqnGNhVIQKlLE 830 (1049)
+.+.|.+|.+..--.+||-|+|+....= ---.+.+.|.+.+.+++....+--+|=.|+.
T Consensus 219 LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvN 279 (877)
T KOG1059|consen 219 LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVN 279 (877)
T ss_pred ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 4577888999999999999999754310 0012233333444444444444444444444
No 47
>PF11510 FA_FANCE: Fanconi Anaemia group E protein FANCE; InterPro: IPR021025 Fanconi Anaemia (FA) is a cancer predisposition disorder characterised by chromosome fragility and hypersensitivity to genotoxic agents that suggest defects in the molecular mechanisms of DNA damage signalling and repair. In response to DNA damage, the FA core complex monoubiquitinates the FANCD2 protein. This ubiquitination targets FANCD2 to nuclear foci where it interacts with a variety of DNA repair proteins. The FA group E protein (FANCE) has an important role in DNA repair, functioning as the FANCD2-binding protein in the FA core complex []. This entry represents the C-terminal domain of FANCE, which consists predominantly of helices and does not contain any beta-strands. This domain folds in a continuous right-handed solenoidal pattern from its N terminus to its C terminus. ; PDB: 2ILR_A.
Probab=51.20 E-value=3e+02 Score=31.35 Aligned_cols=134 Identities=16% Similarity=0.222 Sum_probs=65.6
Q ss_pred HHHhhhcCCHHHHHHHHHHHH-H-----hHHhhhccccccchhhhhcccCCH----HHHHHHHHHHHHHHHHhHhccccc
Q 001588 717 IQQKLETATTEEKNMVFQEIM-P-----QALSLMTDVFGNYVIQKFFEHGTA----SQVRELADQLTGHVLTLSLQMYGC 786 (1049)
Q Consensus 717 LQklLe~aS~Eer~~IfeEI~-p-----~~leL~tD~fGNhVLQKLLe~gs~----eqr~~Li~~Lkg~I~eLs~d~yGS 786 (1049)
.=+.|-.|++.+.+.+++++. + .+..||. .++....+ .....+-..+.+++..| ..-++
T Consensus 40 ~lq~L~~csp~q~e~lc~~L~l~~lsd~~l~~lc~---------~ll~Ls~dls~~~a~~l~~sl~LpkilsL--~~~AS 108 (263)
T PF11510_consen 40 ELQFLNECSPSQVEMLCSQLQLPQLSDDGLLQLCS---------SLLALSPDLSHSNATVLLRSLFLPKILSL--EEPAS 108 (263)
T ss_dssp HHHGGGG--HHHHHHHHHHHTGGG--HHHHHHHHH---------HHHH-SS---HHHHHHHHHHHHHHHHHH---SS---
T ss_pred HHHHHHhCCHHHHHHHHHHhCcCCCCHHHHHHHHH---------HHHccCcccchhhHHHHHHHHHHHHHHhc--CCCcc
Confidence 345667789999999999887 2 2344443 22222111 11222333355777666 67889
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHhccC-CCc---hHHHHHH--hhCChhHHHHHHHHHHhhHHHhhcCCCCchH
Q 001588 787 RVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQ-NGN---HVIQKCI--ECVPEDAIQFIVLTFYDQVVTLSTHPYGCRV 860 (1049)
Q Consensus 787 rVLQkLLe~~s~eqr~~Lv~EL~~~I~eLvkDq-nGN---hVIQKlL--E~lp~e~~e~Iis~L~g~iveLsthkyGS~V 860 (1049)
|++..++..+....-..+++.+..-+ ++++ .|+ -+|-+++ ++++++....++..+.+ +.-...-..|
T Consensus 109 R~L~sal~~f~k~~p~~~~~all~Pl---L~~~~~g~~Q~eLl~rlvk~~~l~p~~~~l~l~~~L~----~~W~E~~~~V 181 (263)
T PF11510_consen 109 RLLVSALTSFCKKYPRPVCEALLVPL---LQAPGLGPPQCELLCRLVKKECLEPDHRLLLLRQILE----LVWNEETFLV 181 (263)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHHH---HHSTT--HHHHHHHHHHHH-TTS-HHHHHHHHHHHHH----S---HHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhccCCHHHHHHHHHHHHh----CcCcHHHHHH
Confidence 99998886554444444444433322 2222 222 3556666 56667666666555443 2222222568
Q ss_pred HHHHHhhc
Q 001588 861 IQRVLEHC 868 (1049)
Q Consensus 861 IQklLe~~ 868 (1049)
+|.+++..
T Consensus 182 lq~lL~~k 189 (263)
T PF11510_consen 182 LQSLLERK 189 (263)
T ss_dssp HHHHHTT-
T ss_pred HHHHHhcC
Confidence 88888775
No 48
>PTZ00429 beta-adaptin; Provisional
Probab=50.07 E-value=7.1e+02 Score=32.47 Aligned_cols=45 Identities=11% Similarity=0.326 Sum_probs=24.1
Q ss_pred cCccccHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCchHHHHHH
Q 001588 890 QDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIE 935 (1049)
Q Consensus 890 ~DqyGNyVVQ~LLe~~~~~eR~~IIe~L~g~Iv~LS~~K~GSrVVE 935 (1049)
.++||-..|-.+|....+..... ...++..+....++...+-|++
T Consensus 231 ~~EW~Qi~IL~lL~~y~P~~~~e-~~~il~~l~~~Lq~~N~AVVl~ 275 (746)
T PTZ00429 231 CNEWGQLYILELLAAQRPSDKES-AETLLTRVLPRMSHQNPAVVMG 275 (746)
T ss_pred CChHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHhcCCCHHHHHH
Confidence 36888877777776554433222 2344444445455555444444
No 49
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=49.89 E-value=4.8e+02 Score=34.15 Aligned_cols=111 Identities=12% Similarity=0.123 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHhcCCCcCHHHHHhhhcCCHHHHHHHHHHHHHhHHhhhccccccchhhhhcccCCHH------HHHHHH
Q 001588 696 ELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTAS------QVRELA 769 (1049)
Q Consensus 696 ~LseI~GkivELa~Dq~GSRvLQklLe~aS~Eer~~IfeEI~p~~leL~tD~fGNhVLQKLLe~gs~e------qr~~Li 769 (1049)
+++++..++.....+..- -..+.++. .+.+.|.+....+...+-+|..+-. +-+|-++.-+++ ..+.|+
T Consensus 513 ll~~lA~~l~p~l~~~~~-~~~~~~~~-~~~~~rr~~~~~lq~k~~~l~~n~~---LfeKgl~lF~dd~~t~~~L~khLL 587 (803)
T PLN03083 513 ILKHLADHLRPMLINSLK-ERRKALFT-ENAERRRRLLDNLQKKIDESFLNMQ---LYEKALDLFEDDQSTSVVLHRHLL 587 (803)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhCCccccchHHHHHHHH
Confidence 466666666555432221 12345555 6677777777777777666655531 222222222111 234444
Q ss_pred HHHHHHHHHhHhcccccHHHHHHH-----------hhcCHHHHHHHHHHHHHH
Q 001588 770 DQLTGHVLTLSLQMYGCRVIQKAI-----------EVVELDQQTQMVKELDGH 811 (1049)
Q Consensus 770 ~~Lkg~I~eLs~d~yGSrVLQkLL-----------e~~s~eqr~~Lv~EL~~~ 811 (1049)
+.+...|..+..+-.+++..-+.= ..++.++|.++++++-+.
T Consensus 588 kT~~~~i~n~l~~~~a~~~~l~~~~~~~~~~~~~~~~l~~~~R~~~~~~lp~~ 640 (803)
T PLN03083 588 RTTAAEIADTLLHTLDIHNKLKNGTEVEDSKTQDTVLLSSAERTALAKNLPGS 640 (803)
T ss_pred HhhhhHHHHHHHHHHHHHHhhhcccccccccCCCcccCCHHHHHHHHHhCcHH
Confidence 444445544444443322221111 234567788777766544
No 50
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=49.82 E-value=5.8e+02 Score=34.83 Aligned_cols=73 Identities=14% Similarity=0.080 Sum_probs=50.1
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhHHhhhccccccchhhhhccc---------CCHHHHHHHHHHHHHHHHHhHhcccc
Q 001588 715 RFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEH---------GTASQVRELADQLTGHVLTLSLQMYG 785 (1049)
Q Consensus 715 RvLQklLe~aS~Eer~~IfeEI~p~~leL~tD~fGNhVLQKLLe~---------gs~eqr~~Li~~Lkg~I~eLs~d~yG 785 (1049)
+.||.+=.+.+.| ..++.|.|.++.|..|++.---++.+... -++..-..+.+.|.+++..|..|...
T Consensus 445 eLl~~lS~~i~de---~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~ 521 (1431)
T KOG1240|consen 445 ELLQELSTYIDDE---VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSA 521 (1431)
T ss_pred HHHHHHhhhcchH---HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCcc
Confidence 4555555555544 46788899999999999887666555422 24555667778888999999988755
Q ss_pred cHHHH
Q 001588 786 CRVIQ 790 (1049)
Q Consensus 786 SrVLQ 790 (1049)
.+|--
T Consensus 522 ~~vRi 526 (1431)
T KOG1240|consen 522 QIVRI 526 (1431)
T ss_pred ceehh
Confidence 55543
No 51
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.42 E-value=8.3e+02 Score=33.06 Aligned_cols=73 Identities=11% Similarity=0.057 Sum_probs=37.8
Q ss_pred HHHhhcCCchHHHHH-------HHHhcCChHHHHHHHHHHHHHHHHHhhcCCchhH-------HHHHHHHHHcCCCcHHH
Q 001588 963 LQVMMKDQFANYVVQ-------KVLETCDDQQLELILNRIKVHLNALKKYTYGKHI-------VARVEKLVAAGGIYLPF 1028 (1049)
Q Consensus 963 L~~La~D~~GNyVVQ-------klLd~~dd~qRe~ILseLk~~L~~L~~~~yGk~I-------V~klEklv~~ge~R~~l 1028 (1049)
|..|+++=-|++|+- .++...+-+.|+..+--|.. ....+++++ +..|...+..++ .++
T Consensus 333 lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~-----i~EGc~~~m~~~l~~Il~~Vl~~l~Dph--prV 405 (1075)
T KOG2171|consen 333 LDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSV-----IAEGCSDVMIGNLPKILPIVLNGLNDPH--PRV 405 (1075)
T ss_pred HHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHH-----HHcccHHHHHHHHHHHHHHHHhhcCCCC--HHH
Confidence 566777777777654 34444556666644432321 122333333 333444444444 455
Q ss_pred HHHHHHhhhhcccc
Q 001588 1029 LYNFFSSFAVLSVQ 1042 (1049)
Q Consensus 1029 ~~al~~af~~~~~~ 1042 (1049)
.++-.+|.|++|.+
T Consensus 406 r~AA~naigQ~std 419 (1075)
T KOG2171|consen 406 RYAALNAIGQMSTD 419 (1075)
T ss_pred HHHHHHHHHhhhhh
Confidence 55666677777764
No 52
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=46.03 E-value=5.8e+02 Score=30.99 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=21.5
Q ss_pred HHHHhHhcccccHHHHHHHhhc--CHHHHHHHHHHHHHHH
Q 001588 775 HVLTLSLQMYGCRVIQKAIEVV--ELDQQTQMVKELDGHI 812 (1049)
Q Consensus 775 ~I~eLs~d~yGSrVLQkLLe~~--s~eqr~~Lv~EL~~~I 812 (1049)
-+..|+..+.|..+|..+.+.+ ...+...-+..+.|.+
T Consensus 238 ~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv 277 (464)
T PF11864_consen 238 TMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAV 277 (464)
T ss_pred HHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHH
Confidence 4556666777777777777766 3333333444444433
No 53
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=42.89 E-value=6.6e+02 Score=30.09 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=49.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCchhHHHhhcCCchHHHHHHHHhcCChHH--------HHHHHHHHHHHHHHHh
Q 001588 932 NVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQ--------LELILNRIKVHLNALK 1003 (1049)
Q Consensus 932 rVVEKcL~~as~k~Rk~IIkELlg~~~~~e~L~~La~D~~GNyVVQklLd~~dd~q--------Re~ILseLk~~L~~L~ 1003 (1049)
+.++.++....+.+...++..++ . ...-|.+..-.-|.+++|...+.+. .+.|+..|-+.+...+
T Consensus 277 ~el~~il~~~~~~~f~~i~~~lf------~-~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~ 349 (409)
T PF01603_consen 277 NELEEILEVLPPEEFQKIMVPLF------K-RLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNS 349 (409)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHH------H-HHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH------H-HHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 34667777777777777777776 2 3334444445566777777764432 3567777777777777
Q ss_pred hcCCchhHHHHHHHHHH
Q 001588 1004 KYTYGKHIVARVEKLVA 1020 (1049)
Q Consensus 1004 ~~~yGk~IV~klEklv~ 1020 (1049)
...|..-|-......++
T Consensus 350 ~~HWn~~Vr~~a~~vl~ 366 (409)
T PF01603_consen 350 KNHWNQTVRNLAQNVLK 366 (409)
T ss_dssp SS-SSTTHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 77777777665544443
No 54
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=41.18 E-value=35 Score=44.16 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=33.4
Q ss_pred hHHhhhccccccchhhhhcccCCHHHHHHHHHHHHHHHHHh
Q 001588 739 QALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTL 779 (1049)
Q Consensus 739 ~~leL~tD~fGNhVLQKLLe~gs~eqr~~Li~~Lkg~I~eL 779 (1049)
.|+.++.-.-|..+|-++|.+.+.+++..|+..|..++..|
T Consensus 576 ~fi~~ls~~KGkkll~R~~~~l~~~q~~~il~~i~~~l~~l 616 (808)
T PF09770_consen 576 PFISILSVRKGKKLLPRIFPFLSQEQRLTILTMIFRHLDQL 616 (808)
T ss_dssp HHHHHTTSHHHHHHHHHHGGGS-HHHHHHHHHHHHHTH---
T ss_pred cceEEEeeCChheeHHhhhhhCChhHHHHHHHHHHHHhhhh
Confidence 47788888899999999999999999999999998888443
No 55
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=40.79 E-value=9.7e+02 Score=31.38 Aligned_cols=39 Identities=21% Similarity=0.362 Sum_probs=21.8
Q ss_pred hhhcCCHHHHHH----HHHHHHHhHHhhhccccccchhhhhcc
Q 001588 720 KLETATTEEKNM----VFQEIMPQALSLMTDVFGNYVIQKFFE 758 (1049)
Q Consensus 720 lLe~aS~Eer~~----IfeEI~p~~leL~tD~fGNhVLQKLLe 758 (1049)
.|...++..++. +|+.|.|-+..+..+--+-|++-|+|.
T Consensus 383 ~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvid 425 (1172)
T KOG0213|consen 383 ALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVID 425 (1172)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHH
Confidence 334444444544 667666666666555556666555553
No 56
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=40.15 E-value=2.1e+02 Score=30.57 Aligned_cols=175 Identities=11% Similarity=0.173 Sum_probs=0.0
Q ss_pred hhhhcccC-CHHHHHHHHHHHHHHHHHhHhc---------ccccHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhccCC--
Q 001588 753 IQKFFEHG-TASQVRELADQLTGHVLTLSLQ---------MYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQN-- 820 (1049)
Q Consensus 753 LQKLLe~g-s~eqr~~Li~~Lkg~I~eLs~d---------~yGSrVLQkLLe~~s~eqr~~Lv~EL~~~I~eLvkDqn-- 820 (1049)
|++++... .......+++.++.-+..++.. +.+|++|..+...+... ....+..+.+.+.+++.+..
T Consensus 31 L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~-~~~~~~~~l~~Ll~~~~~~~~~ 109 (228)
T PF12348_consen 31 LRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH-FEPYADILLPPLLKKLGDSKKF 109 (228)
T ss_dssp HHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHHGGG---HH
T ss_pred HHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHHHccccHH
Q ss_pred ----CchHHHHHHhhCC--hhH-HHHHHHHHHhhHHHhhcCCCCchHHHHHHhhcC---CHHHHHHHHHHHHHHHHHHhc
Q 001588 821 ----GNHVIQKCIECVP--EDA-IQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCH---DEKTQSIMMDEILQSVCMLAQ 890 (1049)
Q Consensus 821 ----GNhVIQKlLE~lp--~e~-~e~Iis~L~g~iveLsthkyGS~VIQklLe~~~---d~~~r~~LIeeI~~~l~~La~ 890 (1049)
+..++..+++.++ ... ...+...+...-..+- ......+..+++... ..-.....++.+.+.+..+..
T Consensus 110 i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR--~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~ 187 (228)
T PF12348_consen 110 IREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVR--EECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLS 187 (228)
T ss_dssp HHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHH--HHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCC
Q ss_pred CccccHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCchHHHHHHHHHhcCCHHHHHHH
Q 001588 891 DQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQAL 949 (1049)
Q Consensus 891 DqyGNyVVQ~LLe~~~~~eR~~IIe~L~g~Iv~LS~~K~GSrVVEKcL~~as~k~Rk~I 949 (1049)
|+ +.-++.-....+......++.+. +.++...++..++.|
T Consensus 188 D~------------------~~~VR~~Ar~~~~~l~~~~~~~a-~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 188 DA------------------DPEVREAARECLWALYSHFPERA-ESILSMLDPNIQKYL 227 (228)
T ss_dssp SS-------------------HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred CC------------------CHHHHHHHHHHHHHHHHHCCHhh-ccchhcchhcccccC
No 57
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=36.01 E-value=4.2e+02 Score=29.99 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=46.3
Q ss_pred cCCHHHHHHHHHHHHHhHHhhhccc------cccchhhhhcccCCHHHHHHHHHHHHHHHHHhHhcccc-cHHHHHHHhh
Q 001588 723 TATTEEKNMVFQEIMPQALSLMTDV------FGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYG-CRVIQKAIEV 795 (1049)
Q Consensus 723 ~aS~Eer~~IfeEI~p~~leL~tD~------fGNhVLQKLLe~gs~eqr~~Li~~Lkg~I~eLs~d~yG-SrVLQkLLe~ 795 (1049)
..+.......+..+.|-++.|+.|- -|..++..+++...... ......+| ..|++.++..
T Consensus 107 ~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~-------------~~~L~~tGl~~v~~~al~~ 173 (282)
T PF10521_consen 107 QLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE-------------WDILRRTGLFSVFEDALFP 173 (282)
T ss_pred cCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh-------------hHHHHHcChHHHHHHHHHH
Confidence 5555667788888888888888774 35555555555554433 11122233 3344444432
Q ss_pred cC--------HHHHHHHHHHHHHHHHHHhc
Q 001588 796 VE--------LDQQTQMVKELDGHIMRCVR 817 (1049)
Q Consensus 796 ~s--------~eqr~~Lv~EL~~~I~eLvk 817 (1049)
+- .++-..++...++.+..|++
T Consensus 174 ~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~ 203 (282)
T PF10521_consen 174 CLYYLPPITPEDESLELLQAAYPALLSLLK 203 (282)
T ss_pred HhhcCCCCCCchhhHHHHHHHHHHHHHHHH
Confidence 11 25556677777776666644
No 58
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=35.80 E-value=3e+02 Score=34.56 Aligned_cols=36 Identities=8% Similarity=0.245 Sum_probs=19.1
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHhhcCCchhHHHHH
Q 001588 980 LETCDDQQLELILNRIKVHLNALKKYTYGKHIVARV 1015 (1049)
Q Consensus 980 Ld~~dd~qRe~ILseLk~~L~~L~~~~yGk~IV~kl 1015 (1049)
++..|++..++++..++..++-......+..++..+
T Consensus 234 f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~ 269 (556)
T PF05918_consen 234 FDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYM 269 (556)
T ss_dssp --SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHH
Confidence 344455666677777766666666666666555543
No 59
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=35.53 E-value=3.5e+02 Score=33.91 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=15.2
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHHHHH
Q 001588 896 YVVQHVLEHGKPHERSAIIKKLTGQIV 922 (1049)
Q Consensus 896 yVVQ~LLe~~~~~eR~~IIe~L~g~Iv 922 (1049)
|+|.-++-||.-+....+++.|...++
T Consensus 165 ylind~~~hcqrk~~~~~~~~l~~~v~ 191 (757)
T KOG4368|consen 165 YLINDVLHHCQRKQARELLAALQKVVV 191 (757)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 455555666665555556666655443
No 60
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=35.08 E-value=1.1e+03 Score=30.47 Aligned_cols=62 Identities=19% Similarity=0.297 Sum_probs=35.7
Q ss_pred hcCCCcCHHHHHhhhcCCHHH------------HHHHHHHHHH----hHHhhhccccccchhhhhcccCCHHHHHHHHHH
Q 001588 708 SADQYGSRFIQQKLETATTEE------------KNMVFQEIMP----QALSLMTDVFGNYVIQKFFEHGTASQVRELADQ 771 (1049)
Q Consensus 708 a~Dq~GSRvLQklLe~aS~Ee------------r~~IfeEI~p----~~leL~tD~fGNhVLQKLLe~gs~eqr~~Li~~ 771 (1049)
-+++.|.++|+-+|+.+.+.. +...+.+|.+ ++-.+..++ +.+....-++++
T Consensus 111 ~~~~G~~~ll~~Lldta~~~s~~~~~~~~~~~~V~~~C~~iL~~ll~~Lq~lv~~~------------~~~~~~ipfL~~ 178 (696)
T PF14838_consen 111 QCEQGAARLLQFLLDTASPASVIDTGGLNAHQAVREACDRILQLLLQDLQKLVRNR------------GPQPRNIPFLEE 178 (696)
T ss_pred hccccHHHHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc------------cCCcccchHHHH
Confidence 357788999999998876432 2233333333 332332222 333344567777
Q ss_pred HHHHHHHhHh
Q 001588 772 LTGHVLTLSL 781 (1049)
Q Consensus 772 Lkg~I~eLs~ 781 (1049)
++.++.+|+.
T Consensus 179 l~~~~~~Lc~ 188 (696)
T PF14838_consen 179 LKAHITELCK 188 (696)
T ss_pred HHHHHHHHHH
Confidence 8888777543
No 61
>COG1536 FliG Flagellar motor switch protein [Cell motility and secretion]
Probab=34.90 E-value=8.2e+02 Score=28.86 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCchhHHHhhcCCchHHHHHHHHhcCChHHHHHHHHHHH
Q 001588 930 ASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIK 996 (1049)
Q Consensus 930 GSrVVEKcL~~as~k~Rk~IIkELlg~~~~~e~L~~La~D~~GNyVVQklLd~~dd~qRe~ILseLk 996 (1049)
....+-..|+-+.++.|++|++.|- .+..+|+++......- +...-.++.++.|+..++
T Consensus 263 ~~~~La~aLkg~~~~lrekilsnms------kR~~e~i~~el~~~gp--i~~~dve~aq~~il~~~r 321 (339)
T COG1536 263 DKEDLAIALKGASEELREKILSNMS------KRAAEMLKEELEFLGP--VRLSDVETAQKAILNIVR 321 (339)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHhcc------HHHHHHHHHHhhccCC--ccHHHHHHHHHHHHHHHH
Confidence 4556666777777788888887774 4566666665544333 111112333555665544
No 62
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.88 E-value=1.2e+03 Score=30.58 Aligned_cols=61 Identities=15% Similarity=0.077 Sum_probs=42.1
Q ss_pred HHHHHhHhcccccHHHHHHHhhcCHHHHHHHHHHHHHHHH------HHhccCCCchHHHHHHhhCCh
Q 001588 774 GHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIM------RCVRDQNGNHVIQKCIECVPE 834 (1049)
Q Consensus 774 g~I~eLs~d~yGSrVLQkLLe~~s~eqr~~Lv~EL~~~I~------eLvkDqnGNhVIQKlLE~lp~ 834 (1049)
.++.-|..-.--+..|+|+++..+.+....++-+|..+.. .+..++.++-+-+++.++...
T Consensus 538 ~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~ 604 (829)
T KOG2280|consen 538 EQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDR 604 (829)
T ss_pred chhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhch
Confidence 4565565556667889999999988887777766655432 355677777777777775443
No 63
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=34.85 E-value=5.2e+02 Score=26.51 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHH-HHHhcCCCCchhHHHhhcCCc-hHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhc
Q 001588 930 ASNVIEKCLSFGTPAERQALV-NEMLGSIEENEPLQVMMKDQF-ANYVVQKVLETCDDQQLELILNRIKVHLNALKKY 1005 (1049)
Q Consensus 930 GSrVVEKcL~~as~k~Rk~II-kELlg~~~~~e~L~~La~D~~-GNyVVQklLd~~dd~qRe~ILseLk~~L~~L~~~ 1005 (1049)
+=.++|.|++.|+......|. ++|+ ..|..|+.+.| | ...+...+++|++-|..=-..+...
T Consensus 58 AL~LLe~~vkNCG~~fh~evas~~Fl------~el~kl~~~k~~~--------~~~~~~Vk~kil~li~~W~~~f~~~ 121 (139)
T cd03567 58 ALTVLEACMKNCGERFHSEVGKFRFL------NELIKLVSPKYLG--------SRTSEKVKTKIIELLYSWTLELPHE 121 (139)
T ss_pred HHHHHHHHHHHcCHHHHHHHHhHHHH------HHHHHHhccccCC--------CCCCHHHHHHHHHHHHHHHHHhccc
Confidence 345788999988877766666 5555 33666665433 1 1123445566666555444444433
No 64
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=34.51 E-value=6.9e+02 Score=29.93 Aligned_cols=47 Identities=19% Similarity=0.396 Sum_probs=25.4
Q ss_pred HHHHhhCChhHHHHHHHHHHhhHHHhhcCCCCchHHHHHHhhcCCHHH
Q 001588 826 QKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKT 873 (1049)
Q Consensus 826 QKlLE~lp~e~~e~Iis~L~g~iveLsthkyGS~VIQklLe~~~d~~~ 873 (1049)
..+++.++++....+...+...+....... -..|.++.+..+.++..
T Consensus 280 ~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~~~ 326 (409)
T PF01603_consen 280 EEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNEYF 326 (409)
T ss_dssp HHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCHHH
Confidence 344555666666666665555555444333 35677777777666543
No 65
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=32.80 E-value=1.5e+02 Score=32.78 Aligned_cols=132 Identities=14% Similarity=0.184 Sum_probs=71.1
Q ss_pred CchHHHHHHhhcCCHHH--HHHHHHHHHHHHHHHhcCccccHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCchHHHHH
Q 001588 857 GCRVIQRVLEHCHDEKT--QSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVI 934 (1049)
Q Consensus 857 GS~VIQklLe~~~d~~~--r~~LIeeI~~~l~~La~DqyGNyVVQ~LLe~~~~~eR~~IIe~L~g~Iv~LS~~K~GSrVV 934 (1049)
||..++.++..-..... ...++.+|.+.+.++-. .-|...-..++. +....+.++.....-|-.|+.++.|-.++
T Consensus 84 Gc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~-~~g~~~~~~lfs--~~~l~~tl~~~Yf~~IG~lS~~~~Gl~lL 160 (226)
T PF14666_consen 84 GCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDP-MSGITAHDPLFS--PQRLSTTLSRGYFLFIGVLSSTPNGLKLL 160 (226)
T ss_pred HHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhh-hcCCcccccccC--HHHHHhhHHHHHHHHHHHHhCChhHHHHH
Confidence 77788777776322211 11244444444443311 111111111221 01112334444445567789999998877
Q ss_pred HHHH------hcCCHHHHHHHHHHHhcCCCCchhHHHhhcCCchHHHHHHHHhcCChHHHHHHHHHHHHH
Q 001588 935 EKCL------SFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVH 998 (1049)
Q Consensus 935 EKcL------~~as~k~Rk~IIkELlg~~~~~e~L~~La~D~~GNyVVQklLd~~dd~qRe~ILseLk~~ 998 (1049)
|++= .....+.|..+++-++..- ....|.+..-|+.|+|..+.+..|....+.|+..
T Consensus 161 e~~~if~~l~~i~~~~~~~~l~klil~~L-------DY~~~~~~R~iLsKaLt~~s~~iRl~aT~~L~~l 223 (226)
T PF14666_consen 161 ERWNIFTMLYHIFSLSSRDDLLKLILSSL-------DYSVDGHPRIILSKALTSGSESIRLYATKHLRVL 223 (226)
T ss_pred HHCCHHHHHHHHHccCchHHHHHHHHhhC-------CCCCccHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 7531 1222334455555555332 3566888899999999999988887666555443
No 66
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=32.39 E-value=7.5e+02 Score=30.04 Aligned_cols=15 Identities=20% Similarity=0.598 Sum_probs=7.1
Q ss_pred CCCCchHHHHHHhhc
Q 001588 854 HPYGCRVIQRVLEHC 868 (1049)
Q Consensus 854 hkyGS~VIQklLe~~ 868 (1049)
+.+|-.+++.+++++
T Consensus 217 D~~gF~LL~~iv~~~ 231 (435)
T PF03378_consen 217 DHYGFDLLESIVENL 231 (435)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHC
Confidence 334444555555544
No 67
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=32.08 E-value=2.4e+02 Score=28.86 Aligned_cols=16 Identities=13% Similarity=0.256 Sum_probs=8.1
Q ss_pred cccccHHHHHHHhhcC
Q 001588 782 QMYGCRVIQKAIEVVE 797 (1049)
Q Consensus 782 d~yGSrVLQkLLe~~s 797 (1049)
..++..+|+.+.+...
T Consensus 69 ~~f~~~ll~~~~~~f~ 84 (209)
T PF02854_consen 69 SEFRSLLLNRCQEEFE 84 (209)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3455555555554443
No 68
>PRK07194 fliG flagellar motor switch protein G; Reviewed
Probab=31.89 E-value=8.8e+02 Score=28.30 Aligned_cols=83 Identities=12% Similarity=0.147 Sum_probs=50.6
Q ss_pred HHHHhhhcC-CHHHHHHHHHHHHHhHHhhhccccccchhhhhcccCCHHHHHHHHHHHHHHHHHhHhcccccHHHHHHHh
Q 001588 716 FIQQKLETA-TTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIE 794 (1049)
Q Consensus 716 vLQklLe~a-S~Eer~~IfeEI~p~~leL~tD~fGNhVLQKLLe~gs~eqr~~Li~~Lkg~I~eLs~d~yGSrVLQkLLe 794 (1049)
+++.+|+.+ .++.-..|++++.... . ...++ .|...++++...++..=.++...+..-.-+.-.--+++.
T Consensus 79 ~~~~~L~~alg~~~a~~il~~i~~~~-------~-~~~~~-~L~~~~~~~la~~l~~EhPQ~iAiiL~~L~~e~AA~VL~ 149 (334)
T PRK07194 79 YLQRTLNKALGGDIAKSLINSIYGDE-------I-RHRMQ-RLQWVDPQQLARLIANEHLQMQAVFLAFLPPESAAAVLK 149 (334)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHhccc-------c-CchHH-HHHCCCHHHHHHHHHccCHHHHHHHHHhcCHHHHHHHHH
Confidence 566666554 4555566666654321 1 12343 356667777777777666777777666666666666777
Q ss_pred hcCHHHHHHHHHH
Q 001588 795 VVELDQQTQMVKE 807 (1049)
Q Consensus 795 ~~s~eqr~~Lv~E 807 (1049)
.++.+.+..++..
T Consensus 150 ~Lpe~~~~~v~~r 162 (334)
T PRK07194 150 YLPEDRQDDILYR 162 (334)
T ss_pred hCCHHHHHHHHHH
Confidence 7776666665544
No 69
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=30.60 E-value=8e+02 Score=30.95 Aligned_cols=10 Identities=50% Similarity=1.089 Sum_probs=4.8
Q ss_pred HHHHHHhhcC
Q 001588 860 VIQRVLEHCH 869 (1049)
Q Consensus 860 VIQklLe~~~ 869 (1049)
+|..++-+|-
T Consensus 166 lind~~~hcq 175 (757)
T KOG4368|consen 166 LINDVLHHCQ 175 (757)
T ss_pred HHHHHHHHHH
Confidence 3444555553
No 70
>KOG2344 consensus Exocyst component protein and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.26 E-value=1.1e+03 Score=30.16 Aligned_cols=83 Identities=25% Similarity=0.425 Sum_probs=50.4
Q ss_pred hHHHhhcCCchHHHHHHHHhcCChHHHHHHH--HHHHHHHHHHhhcC--CchhHHHHHHHHHHcCC-------Cc---HH
Q 001588 962 PLQVMMKDQFANYVVQKVLETCDDQQLELIL--NRIKVHLNALKKYT--YGKHIVARVEKLVAAGG-------IY---LP 1027 (1049)
Q Consensus 962 ~L~~La~D~~GNyVVQklLd~~dd~qRe~IL--seLk~~L~~L~~~~--yGk~IV~klEklv~~ge-------~R---~~ 1027 (1049)
.|..+..-...+||+|++-+ .....++ +.|+.|...++.+. |=+-.|.+|..++.... .| ..
T Consensus 460 aL~~lFlmNN~~yiv~kvks----s~L~~llGd~wl~kh~~~~~qy~~~Y~r~sW~~vl~~L~~~~s~~~~~~~~~~~Ke 535 (623)
T KOG2344|consen 460 ALSYLFLMNNLHYIVQKVKS----SELRLLLGDDWLRKHEEKLRQYATSYERESWGKVLSLLTDEGSSSGGKKSKEVLKE 535 (623)
T ss_pred hhHHHHHHhhHHHHHHHHhc----chHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCHHHHHH
Confidence 35667777789999999984 2333333 24566777776553 32346777777777432 12 22
Q ss_pred HHHHHHHhhhhccc-ccccCCC
Q 001588 1028 FLYNFFSSFAVLSV-QNAWFFP 1048 (1049)
Q Consensus 1028 l~~al~~af~~~~~-~~~~~~~ 1048 (1049)
-.+.|.+.|+..=- |..|..|
T Consensus 536 rfk~FN~~FeEv~k~Qs~wvV~ 557 (623)
T KOG2344|consen 536 RFKLFNEQFEEVYKKQSQWVVP 557 (623)
T ss_pred HHHHHHHHHHHHHHhhCceecc
Confidence 34566666665554 8888765
No 71
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=30.18 E-value=2.8e+02 Score=33.52 Aligned_cols=14 Identities=14% Similarity=0.318 Sum_probs=6.6
Q ss_pred HHHHHHhhcCHHHH
Q 001588 788 VIQKAIEVVELDQQ 801 (1049)
Q Consensus 788 VLQkLLe~~s~eqr 801 (1049)
..++++..++.+++
T Consensus 106 ~~~~lL~~l~~~er 119 (449)
T TIGR00400 106 VVQQLLASSTEEER 119 (449)
T ss_pred HHHHHHHcCCHHHH
Confidence 34444445554444
No 72
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=29.79 E-value=8.6e+02 Score=27.49 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=30.4
Q ss_pred cccHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHhccC------CCchHHHHHHhhCChhH
Q 001588 784 YGCRVIQKAIE-VVELDQQTQMVKELDGHIMRCVRDQ------NGNHVIQKCIECVPEDA 836 (1049)
Q Consensus 784 yGSrVLQkLLe-~~s~eqr~~Lv~EL~~~I~eLvkDq------nGNhVIQKlLE~lp~e~ 836 (1049)
++++|+.-++. .++.....+.+.-+.+-+..++-|. .|..+++.+++.++...
T Consensus 95 ~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~ 154 (282)
T PF10521_consen 95 LASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE 154 (282)
T ss_pred ccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh
Confidence 34456666665 5555555555555666666666553 36666666666665543
No 73
>COG4399 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.29 E-value=1e+03 Score=28.30 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCccccHHHHHHHh
Q 001588 880 EILQSVCMLAQDQYGNYVVQHVLE 903 (1049)
Q Consensus 880 eI~~~l~~La~DqyGNyVVQ~LLe 903 (1049)
.+.+.+..+..++-.+-.+|.++.
T Consensus 216 rl~~ellkl~~~~~t~kilq~Ll~ 239 (376)
T COG4399 216 RLQQELLKLLNREETKKILQQLLT 239 (376)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHH
Confidence 333334444444444444444443
No 74
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=28.94 E-value=6.4e+02 Score=25.77 Aligned_cols=75 Identities=21% Similarity=0.265 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHH-HHHhcCCCCchhHHHhhcCCchHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCc
Q 001588 930 ASNVIEKCLSFGTPAERQALV-NEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYG 1008 (1049)
Q Consensus 930 GSrVVEKcL~~as~k~Rk~II-kELlg~~~~~e~L~~La~D~~GNyVVQklLd~~dd~qRe~ILseLk~~L~~L~~~~yG 1008 (1049)
+=.++|.|++.|+......|. ++|+ +.|..|+.+ ..+...+++|++-|..--..+...+.=
T Consensus 61 AL~LLe~~vkNCG~~fh~evas~~fl------~~l~~l~~~------------~~~~~Vk~kil~li~~W~~~f~~~~~l 122 (142)
T cd03569 61 ALLLLESCVKNCGTHFHDEVASREFM------DELKDLIKT------------TKNEEVRQKILELIQAWALAFRNKPQL 122 (142)
T ss_pred HHHHHHHHHHHCCHHHHHHHhhHHHH------HHHHHHHcc------------cCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 455788888888776555444 3344 345566655 244555666666666555555555444
Q ss_pred hhHHHHHHHHHHcC
Q 001588 1009 KHIVARVEKLVAAG 1022 (1049)
Q Consensus 1009 k~IV~klEklv~~g 1022 (1049)
..|.+.-+.|.+.|
T Consensus 123 ~~i~~~y~~L~~~G 136 (142)
T cd03569 123 KYVVDTYQILKAEG 136 (142)
T ss_pred HHHHHHHHHHHHcC
Confidence 55555555555544
No 75
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=28.80 E-value=1.3e+03 Score=29.15 Aligned_cols=65 Identities=11% Similarity=0.197 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHhHhcccccHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhccCCCchHHHHHH
Q 001588 765 VRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCI 829 (1049)
Q Consensus 765 r~~Li~~Lkg~I~eLs~d~yGSrVLQkLLe~~s~eqr~~Lv~EL~~~I~eLvkDqnGNhVIQKlL 829 (1049)
++.|+..-..-+..++.+.----.+-+++.......+.+|++.|...+.+.-.++.+-+-+-+|+
T Consensus 45 k~si~~lyisg~~~~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y 109 (711)
T COG1747 45 KNSIIALYISGIISLSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCY 109 (711)
T ss_pred hhhhHHHHHHHHHHhhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 34444444444555666665555666677766667777777777776666655554444333333
No 76
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=28.70 E-value=1.3e+03 Score=30.54 Aligned_cols=12 Identities=0% Similarity=-0.080 Sum_probs=6.3
Q ss_pred ccchhhhhcccC
Q 001588 749 GNYVIQKFFEHG 760 (1049)
Q Consensus 749 GNhVLQKLLe~g 760 (1049)
-+.|+..|+..|
T Consensus 159 ~~KIp~TIrSRC 170 (830)
T PRK07003 159 PQKIPVTVLSRC 170 (830)
T ss_pred hhhccchhhhhe
Confidence 345555555554
No 77
>cd07439 FANCE_c-term Fanconi anemia complementation group E protein, C-terminal domain. Fanconi Anemia (FA) is an autosomal recessive disorder associated with increased susceptibility to various cancers, bone marrow failure, cardiac, renal, and limb malformations, and other characteristics. Cells are highly sensitive to DNA damaging agents. A multi-subunit protein complex, the FA core complex, is responsible for ubiquitination of the protein FANCD2 in response to DNA damage. This monoubiquitination results in a downstream effect on homology-directed DNA repair. FANCE is part of the FA core complex and its C-terminal domain, which is modeled here, has been shown to directly interact with FANCD2. The domain contains a five-fold repeat of a structural unit similar to ARM and HEAT repeats. FANCE appears conserved in metazoa and in plants.
Probab=28.57 E-value=9.1e+02 Score=27.38 Aligned_cols=69 Identities=20% Similarity=0.299 Sum_probs=35.6
Q ss_pred CchHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHhhCC---hhhHHHHHHHHHHHHHHHhc
Q 001588 857 GCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGK---PHERSAIIKKLTGQIVQMSQ 926 (1049)
Q Consensus 857 GS~VIQklLe~~~d~~~r~~LIeeI~~~l~~La~DqyGNyVVQ~LLe~~~---~~eR~~IIe~L~g~Iv~LS~ 926 (1049)
=+.+|.++++.|..++....++..+... ..+.-++.---|+|.+|+..- ++....++..|..+...++.
T Consensus 135 q~ell~rlike~~~~~~~~l~~~q~L~~-~~~~W~E~~~~v~q~lL~~~~~lte~~~~~Lv~~L~~~a~~~sk 206 (254)
T cd07439 135 QAELLCRLVKECFEPDAVLLLLHQILIS-PNLVWTEETFTVIQALLNRKPPLSEESFSELVSKLQEQAEAFSK 206 (254)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHcc-ccccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 3556777777776555544444444321 112233444467888888643 33334444444444444444
No 78
>COG2733 Predicted membrane protein [Function unknown]
Probab=27.52 E-value=1.2e+03 Score=28.31 Aligned_cols=56 Identities=14% Similarity=0.305 Sum_probs=28.8
Q ss_pred hhCChhHHHHHHH-HHHhhHHHhhcCCCCchHHHHHHhhcCCHHHHHHHHHHHHHHHHHHh
Q 001588 830 ECVPEDAIQFIVL-TFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLA 889 (1049)
Q Consensus 830 E~lp~e~~e~Iis-~L~g~iveLsthkyGS~VIQklLe~~~d~~~r~~LIeeI~~~l~~La 889 (1049)
+.+.++.++.+++ .+..++.+.--.+-..+|++.++.. ...+.+++++...+....
T Consensus 140 ~lld~~~iq~~ik~~v~~~i~e~~~~~~~~~vL~~l~~d----~r~q~l~D~~~~~L~r~~ 196 (415)
T COG2733 140 ELLDDDDIQRVIKRAVIRAIAEVYLGPTAGRVLESLTAD----DRHQALLDKLIDRLIRWL 196 (415)
T ss_pred HHhCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhc----ccHHHHHHHHHHHHHHHh
Confidence 3445554544443 3445555555555555555555443 334556666666554433
No 79
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.51 E-value=1.1e+03 Score=27.85 Aligned_cols=42 Identities=14% Similarity=0.079 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHHh------HHhhhccccccchhhhhcccCCHHHHH
Q 001588 724 ATTEEKNMVFQEIMPQ------ALSLMTDVFGNYVIQKFFEHGTASQVR 766 (1049)
Q Consensus 724 aS~Eer~~IfeEI~p~------~leL~tD~fGNhVLQKLLe~gs~eqr~ 766 (1049)
.+.+++.--|++|..+ +..|++...---|+ ..++..+.+.|.
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll-~~l~~~~~~lR~ 142 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLL-GYLENSDAELRE 142 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHH-HHhcCCcHHHHH
Confidence 4567777777777654 45555554333333 477776666554
No 80
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.95 E-value=1.7e+03 Score=29.61 Aligned_cols=224 Identities=15% Similarity=0.245 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHHHHHH--HhHhcccccHHHHHHHhhcCH--------HHHHHHHHHHHHHHHHH------hccCCCchH
Q 001588 761 TASQVRELADQLTGHVL--TLSLQMYGCRVIQKAIEVVEL--------DQQTQMVKELDGHIMRC------VRDQNGNHV 824 (1049)
Q Consensus 761 s~eqr~~Li~~Lkg~I~--eLs~d~yGSrVLQkLLe~~s~--------eqr~~Lv~EL~~~I~eL------vkDqnGNhV 824 (1049)
.+++...++..+..++. ..+.|.|+.+.|+|++-+... +...-.+..+..++.+- ..++|--..
T Consensus 492 ~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKa 571 (960)
T KOG1992|consen 492 GKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKA 571 (960)
T ss_pred ChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHH
Confidence 44555555555544432 456799999999999976553 22222222222222211 233343344
Q ss_pred HHHHHhhCChhH---HHHHHHHHHhhHHHhhcCCCCchHHHHHHh--------hcC-CHHHHHHHHHHHHHHHHHHhc-C
Q 001588 825 IQKCIECVPEDA---IQFIVLTFYDQVVTLSTHPYGCRVIQRVLE--------HCH-DEKTQSIMMDEILQSVCMLAQ-D 891 (1049)
Q Consensus 825 IQKlLE~lp~e~---~e~Iis~L~g~iveLsthkyGS~VIQklLe--------~~~-d~~~r~~LIeeI~~~l~~La~-D 891 (1049)
|+.+|...+... ...++..+..-+.+.++++....--..++| .|+ ++.....+.+.++.-+..+.. |
T Consensus 572 ImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eD 651 (960)
T KOG1992|consen 572 IMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSED 651 (960)
T ss_pred HHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHH
Confidence 455555554443 334455555555666665544332222222 122 222233333333332222111 1
Q ss_pred --ccccHHHH---HHHhhCC---hhhHHHHHHHHH-HHHHHHhcCch-HHHHHHHHHhcCCHHHH-HHHHHHHhcCCCCc
Q 001588 892 --QYGNYVVQ---HVLEHGK---PHERSAIIKKLT-GQIVQMSQQKF-ASNVIEKCLSFGTPAER-QALVNEMLGSIEEN 960 (1049)
Q Consensus 892 --qyGNyVVQ---~LLe~~~---~~eR~~IIe~L~-g~Iv~LS~~K~-GSrVVEKcL~~as~k~R-k~IIkELlg~~~~~ 960 (1049)
.+=.||.| -++++.. ++.-..++..|+ +.+++-.-+-- --++++.+|+.+....- ..-+.-++|.- .
T Consensus 652 I~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGif--q 729 (960)
T KOG1992|consen 652 IQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIF--Q 729 (960)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHH--H
Confidence 12233333 3555443 344444544443 44444433322 25677777776543211 01111222110 0
Q ss_pred hhHHHhhcCCchHHHHHHHHhcCChH
Q 001588 961 EPLQVMMKDQFANYVVQKVLETCDDQ 986 (1049)
Q Consensus 961 e~L~~La~D~~GNyVVQklLd~~dd~ 986 (1049)
.-+..=+.|.+|-|++.++++..+..
T Consensus 730 kLiaSka~Dh~GF~LLn~i~~~~~~~ 755 (960)
T KOG1992|consen 730 KLIASKANDHHGFYLLNTIIESIPPN 755 (960)
T ss_pred HHhcCcccchhHHHHHHHHHhcCCHh
Confidence 11122367999999999999998765
No 81
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=25.88 E-value=1.1e+03 Score=29.90 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=11.6
Q ss_pred HhHhcccccHHHHHHHh
Q 001588 778 TLSLQMYGCRVIQKAIE 794 (1049)
Q Consensus 778 eLs~d~yGSrVLQkLLe 794 (1049)
++-.+..||.+++....
T Consensus 358 ~ipl~~~G~llL~~~~~ 374 (633)
T PF08568_consen 358 EIPLSTSGCLLLLANMY 374 (633)
T ss_pred cCCCCcchHHHHHHHHH
Confidence 56666777777776665
No 82
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=25.74 E-value=1.5e+03 Score=30.00 Aligned_cols=169 Identities=17% Similarity=0.206 Sum_probs=80.9
Q ss_pred HHHHHHhccCCCchHHHHHHhhCChh---HHHHHHHHHHhhHHHhhcCCCCchHHHHHHhhcCCHHHHHHHHHHHHH---
Q 001588 810 GHIMRCVRDQNGNHVIQKCIECVPED---AIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQ--- 883 (1049)
Q Consensus 810 ~~I~eLvkDqnGNhVIQKlLE~lp~e---~~e~Iis~L~g~iveLsthkyGS~VIQklLe~~~d~~~r~~LIeeI~~--- 883 (1049)
..++++++++. +|++|++.+.+. .++.-...+...++.++.+.-|-..+.+-|+. +.....++.-++.
T Consensus 180 ~~Viq~l~d~~---li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s---~e~ieqLl~~ml~~~~ 253 (838)
T KOG2073|consen 180 TDVIQWLNDQE---LIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLES---PETIEQLLKIMLEDGT 253 (838)
T ss_pred HHHHHHHhhHH---HHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcC---HHHHHHHHHHHccCCc
Confidence 34555666655 788888876442 23334445556667776666677766665554 2222222222221
Q ss_pred -----------HHHHHhcCcc--ccHHHHHHHhhC----ChhhHHHHHHHHHH---HHHHHhcCchHHHHHHHHHhcCCH
Q 001588 884 -----------SVCMLAQDQY--GNYVVQHVLEHG----KPHERSAIIKKLTG---QIVQMSQQKFASNVIEKCLSFGTP 943 (1049)
Q Consensus 884 -----------~l~~La~Dqy--GNyVVQ~LLe~~----~~~eR~~IIe~L~g---~Iv~LS~~K~GSrVVEKcL~~as~ 943 (1049)
.+..+-.+.. ..--.+.++.+. .+.....++..|.+ .|++|....-+-.+++.-+..-.+
T Consensus 254 s~s~lVs~i~vlI~ll~~~r~~~~~~~~~~i~~q~~~~~d~~~~~~~l~~~~p~L~dF~~lL~~~~~~~~l~tt~g~l~p 333 (838)
T KOG2073|consen 254 SLSVLVSGIIVLISLLNPRRDTVETNSTTTILSQPPSERDPIVLNELLGAMEPRLGDFVQLLLEPEKLDLLETTYGELEP 333 (838)
T ss_pred chhhHHHHHHHHHHhcCcccccccccceeeeecCCccccCccchHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhccCC
Confidence 1111111111 110011222221 12334556666554 456666666665555554443221
Q ss_pred ---HHHHHH---HHHHhcCCCCchhHHHhhcCCchHHHHHHHHhcCCh
Q 001588 944 ---AERQAL---VNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDD 985 (1049)
Q Consensus 944 ---k~Rk~I---IkELlg~~~~~e~L~~La~D~~GNyVVQklLd~~dd 985 (1049)
..|-+| +.+++.+.+ ..-+.+++...+.+.++..+.+.+..
T Consensus 334 PLG~~Rlki~eliaelL~~~~-~~l~~el~~~~~~~r~lD~f~~y~~n 380 (838)
T KOG2073|consen 334 PLGFERLKIVELIAELLHCSN-MTLLNELRAEGIAERLLDLFFEYPWN 380 (838)
T ss_pred CcchHHHHHHHHHHHHhccCc-HHHHhHHhhhhhHHHHHHHHHhcchh
Confidence 345544 445553332 23344666666666777777776644
No 83
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.54 E-value=1.6e+03 Score=29.41 Aligned_cols=19 Identities=5% Similarity=0.165 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 001588 988 LELILNRIKVHLNALKKYT 1006 (1049)
Q Consensus 988 Re~ILseLk~~L~~L~~~~ 1006 (1049)
|..|++.+..-+..++..+
T Consensus 431 r~~ii~~l~~~~~~irS~k 449 (948)
T KOG1058|consen 431 RASIIEKLLETFPQIRSSK 449 (948)
T ss_pred HHHHHHHHHHhhhhhcccc
Confidence 5566666666666666544
No 84
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=25.52 E-value=2.4e+03 Score=31.30 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=14.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHH
Q 001588 929 FASNVIEKCLSFGTPAERQALV 950 (1049)
Q Consensus 929 ~GSrVVEKcL~~as~k~Rk~II 950 (1049)
.|-..+.+++++.++..++.-.
T Consensus 609 ggL~~Lv~LL~sgs~~ikk~Aa 630 (2102)
T PLN03200 609 DALRTLIQLLSSSKEETQEKAA 630 (2102)
T ss_pred ccHHHHHHHHcCCCHHHHHHHH
Confidence 3566777888887776666533
No 85
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=25.38 E-value=1.7e+03 Score=29.50 Aligned_cols=44 Identities=11% Similarity=0.116 Sum_probs=31.5
Q ss_pred hccccccchhhhhcccCCHHHHHHHHHHHHHHHHHhHhcccccH
Q 001588 744 MTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCR 787 (1049)
Q Consensus 744 ~tD~fGNhVLQKLLe~gs~eqr~~Li~~Lkg~I~eLs~d~yGSr 787 (1049)
+.+-..++-.|=|++|-....++.|++.|..|+..++.|.+.++
T Consensus 175 lY~~ia~~aFqFCLkYqRktEFRrLCe~LR~HL~~i~k~~nq~~ 218 (988)
T KOG2072|consen 175 LYHDIARKAFQFCLKYQRKTEFRRLCELLRMHLDNINKHQNQST 218 (988)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 33444455555566777777888888888888888888888755
No 86
>PHA03100 ankyrin repeat protein; Provisional
Probab=25.02 E-value=1e+03 Score=28.15 Aligned_cols=27 Identities=7% Similarity=0.213 Sum_probs=16.3
Q ss_pred hccCCCchHHHHHHhhCChhHHHHHHH
Q 001588 816 VRDQNGNHVIQKCIECVPEDAIQFIVL 842 (1049)
Q Consensus 816 vkDqnGNhVIQKlLE~lp~e~~e~Iis 842 (1049)
.+|.+|.-.+...+.....+..+.+++
T Consensus 245 ~~d~~g~TpL~~A~~~~~~~iv~~Ll~ 271 (480)
T PHA03100 245 IKDVYGFTPLHYAVYNNNPEFVKYLLD 271 (480)
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 356667777776666665555555543
No 87
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=24.90 E-value=2.9e+02 Score=33.42 Aligned_cols=82 Identities=16% Similarity=0.233 Sum_probs=41.2
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhHHhhhccccccchhhhhcccCCHHHHHHHHHHHHHHHHHhHhcccccHHHHHHHh
Q 001588 715 RFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIE 794 (1049)
Q Consensus 715 RvLQklLe~aS~Eer~~IfeEI~p~~leL~tD~fGNhVLQKLLe~gs~eqr~~Li~~Lkg~I~eLs~d~yGSrVLQkLLe 794 (1049)
..++.+|+...+.+...+++++.++..............-.+|++.+++.+..+++.+... -+..+++
T Consensus 21 ~~l~~~l~~~~~~dia~~l~~l~~~~~~~~~~~l~~~~~a~vl~~l~~~~~~~ll~~l~~~------------~~~~~~~ 88 (449)
T TIGR00400 21 SKIKEKFLKXQPXDIAEALKRLPGTELILLYRFLPKKIAVDTFSNLDQSTQNKLLNSFTNK------------EISEMIN 88 (449)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCHHHHHHHHHhCChhhHHHHHHcCCHHHHHHHHHhCCHH------------HHHHHHH
Confidence 3455566666666666666666554322222222222333455666666666666655432 2333445
Q ss_pred hcCHHHHHHHHHHH
Q 001588 795 VVELDQQTQMVKEL 808 (1049)
Q Consensus 795 ~~s~eqr~~Lv~EL 808 (1049)
..+.++...+++++
T Consensus 89 ~l~~dd~~~ll~~l 102 (449)
T TIGR00400 89 EMNLDDVIDLLEEV 102 (449)
T ss_pred cCChhHHHHHHHhC
Confidence 55555555555444
No 88
>COG2733 Predicted membrane protein [Function unknown]
Probab=24.62 E-value=1.3e+03 Score=27.91 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=16.1
Q ss_pred ChHHHHHHHHHHHHHHHHHh---hcCCchhHHHHHHH
Q 001588 984 DDQQLELILNRIKVHLNALK---KYTYGKHIVARVEK 1017 (1049)
Q Consensus 984 dd~qRe~ILseLk~~L~~L~---~~~yGk~IV~klEk 1017 (1049)
|+..|..+=+.+..-...|. ...-|+||.+.+++
T Consensus 335 D~~lr~kln~~~~~aa~~l~e~~~~~it~~I~dTv~~ 371 (415)
T COG2733 335 DDALRAKLNEHLVQAAERLAEEKHAEITKHISDTVKR 371 (415)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 44445544444444433333 33345666655543
No 89
>PF03448 MgtE_N: MgtE intracellular N domain; InterPro: IPR006668 This domain is found at the N terminus of eubacterial magnesium transporters of the MgtE family IPR006667 from INTERPRO. This domain is an intracellular domain that has an alpha-helical structure. The crystal structure of the MgtE transporter [] shows two of 5 magnesium ions are in the interface between the N domain and the CBS domains. In the absence of magnesium there is a large shift between the N and CBS domains.; PDB: 2YVX_D 2ZY9_A 2YVZ_B 2YVY_A 2OUX_A 3KXR_A.
Probab=24.42 E-value=1.3e+02 Score=27.97 Aligned_cols=85 Identities=12% Similarity=0.175 Sum_probs=39.2
Q ss_pred HhhhcCCHHHHHHHHHHHHHhHHhhhccccccchhhhhcccCCHHHHHHHHHHHHHHHHHhHhcccccHHHHHHHhhcCH
Q 001588 719 QKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVEL 798 (1049)
Q Consensus 719 klLe~aS~Eer~~IfeEI~p~~leL~tD~fGNhVLQKLLe~gs~eqr~~Li~~Lkg~I~eLs~d~yGSrVLQkLLe~~s~ 798 (1049)
.+|+..+.+++..+|+.+.+....-.-.-.-.....++++..+++....++..+...=..-.....-....++++..++.
T Consensus 8 ~~l~~l~~~~~~~~~~~l~~~~~a~vl~~l~~~~~~~il~~l~~~~~a~il~~m~~dd~~~ll~~L~~~~~~~il~~l~~ 87 (102)
T PF03448_consen 8 ELLEELPPEERAQLFRLLPPEKAAEVLEELDPDTQAEILEALSPEEAAEILAEMDSDDAADLLEELPEEQREKILAALDE 87 (102)
T ss_dssp HCCCTS-CCHHHHHHHHS-HHHHHHHHCTS-CCCCCHCCCCS-HHHHHHHHCCS-HHHHHHHHCCSHHHHHHHHHHCS-H
T ss_pred HHHHhCCHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHccChHHHHHHHHHCCHHHHHHHHHcCCH
Confidence 45566666777777777654322211111222344456666677766666666554322222333334444555555544
Q ss_pred HHHHH
Q 001588 799 DQQTQ 803 (1049)
Q Consensus 799 eqr~~ 803 (1049)
+.+..
T Consensus 88 ~~~~~ 92 (102)
T PF03448_consen 88 EEREE 92 (102)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 90
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=24.30 E-value=2.7e+02 Score=30.89 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=15.0
Q ss_pred HHHHHHhhHHHhhcCCCCchHHHH
Q 001588 840 IVLTFYDQVVTLSTHPYGCRVIQR 863 (1049)
Q Consensus 840 Iis~L~g~iveLsthkyGS~VIQk 863 (1049)
+......-+-.++.++.|-.++++
T Consensus 139 l~~~Yf~~IG~lS~~~~Gl~lLe~ 162 (226)
T PF14666_consen 139 LSRGYFLFIGVLSSTPNGLKLLER 162 (226)
T ss_pred HHHHHHHHHHHHhCChhHHHHHHH
Confidence 444444556677888888666654
No 91
>PF09742 Dymeclin: Dyggve-Melchior-Clausen syndrome protein; InterPro: IPR019142 Dymeclin (Dyggve-Melchior-Clausen syndrome protein) contains a large number of leucine and isoleucine residues and a total of 17 repeated dileucine motifs. It is characteristically about 700 residues long and present in plants and animals. In humans, mutations in the gene coding for this protein give rise to a disorder called Dyggve-Melchior-Clausen syndrome (DMC, MIM 223800), which is an autosomal-recessive disorder characterised by the association of spondylo-epi-metaphyseal dysplasia and mental retardation []. This entry also includes Hid1 (high-temperature-induced dauer-formation protein 1) from Caenorhabditis elegans which encodes a novel highly conserved putative transmembrane protein expressed in neurons []. It contains up to seven potential transmembrane domains separated by regions of low complexity. Functionally this protein might be involved in vesicle secretion or be an inter-cellular signalling protein or be a novel insulin receptor [].
Probab=24.21 E-value=1.6e+03 Score=28.83 Aligned_cols=59 Identities=10% Similarity=0.130 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhcC---CchhHHHHHHHHHHc-CCCcHH-HHHHHHHhhhhcccccccCCCC
Q 001588 990 LILNRIKVHLNALKKYT---YGKHIVARVEKLVAA-GGIYLP-FLYNFFSSFAVLSVQNAWFFPF 1049 (1049)
Q Consensus 990 ~ILseLk~~L~~L~~~~---yGk~IV~klEklv~~-ge~R~~-l~~al~~af~~~~~~~~~~~~~ 1049 (1049)
.+++.+...+.+....+ -...|++.|++-... +..+.. .-...| .|.-......|+.||
T Consensus 611 ~vi~~f~~~v~~~~~~~~~~s~~~vl~~i~~~~~~~~~~~~~~~~~l~f-~Y~e~~~~~~ff~py 674 (678)
T PF09742_consen 611 RVIQFFSSRVESICADKGELSVSEVLEVIRKGTLVWPTDPLKKFPELKF-KYEEEEQPEEFFIPY 674 (678)
T ss_pred HHHHHHHHHHHhccCCcccccHHHHHHHHHHhhhhcCCCCCCCCCCceE-EeecCCCcccceeee
Confidence 34455555555544443 344555555544443 333333 112222 444444466777775
No 92
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=23.90 E-value=1.2e+03 Score=28.91 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhh
Q 001588 993 NRIKVHLNALKK 1004 (1049)
Q Consensus 993 seLk~~L~~L~~ 1004 (1049)
+++.+|+..|-.
T Consensus 482 ~~mePhL~~Lt~ 493 (516)
T KOG2956|consen 482 EEMEPHLEQLTS 493 (516)
T ss_pred HhhhhHhhhccH
Confidence 455666666643
No 93
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=23.83 E-value=1.3e+03 Score=27.64 Aligned_cols=86 Identities=10% Similarity=0.182 Sum_probs=46.4
Q ss_pred HHHHHHHHhHHhhhccccccc--hhhhhcccCCHHHHHHHHHHHHHHHHHhHhcccccHH------HHHHHhhc---CHH
Q 001588 731 MVFQEIMPQALSLMTDVFGNY--VIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRV------IQKAIEVV---ELD 799 (1049)
Q Consensus 731 ~IfeEI~p~~leL~tD~fGNh--VLQKLLe~gs~eqr~~Li~~Lkg~I~eLs~d~yGSrV------LQkLLe~~---s~e 799 (1049)
.|+..-.|+|..-.....+.. .+.....-...+-++.+++.+..++.++-.+.-+.|+ |+.+++.. +..
T Consensus 169 ~ii~~y~~~Fl~~~~~~~~~~l~~~~~~~~~~~~~l~~~il~~i~~~fl~~~~~~p~p~l~~vL~fl~~Ll~~~~~~~~~ 248 (373)
T PF14911_consen 169 NIIQQYLPRFLPASPSKLVARLSTLLSAFTPRNEELRKFILQVIRSNFLEFKGSAPPPRLASVLAFLQQLLKRLQRQNEN 248 (373)
T ss_pred HHHHHHHhHhccCCCccccccccccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHhcCcccch
Confidence 355555566655544443333 1222222224566788888888888877664444433 45555553 223
Q ss_pred HHHHHHHHHHHHHHHHh
Q 001588 800 QQTQMVKELDGHIMRCV 816 (1049)
Q Consensus 800 qr~~Lv~EL~~~I~eLv 816 (1049)
....+++.+.+.+++|+
T Consensus 249 ~~~~~~~~~lp~lL~c~ 265 (373)
T PF14911_consen 249 QILTLLRLVLPSLLECL 265 (373)
T ss_pred hHHHHHHHhhHHHHHHH
Confidence 33445555666666654
No 94
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=23.82 E-value=2.2e+03 Score=30.33 Aligned_cols=38 Identities=11% Similarity=0.117 Sum_probs=24.9
Q ss_pred HHHHHHhcCCCcCH----HHHHhhhcCCHHHHHHHHHHHHHh
Q 001588 702 GHVVEFSADQYGSR----FIQQKLETATTEEKNMVFQEIMPQ 739 (1049)
Q Consensus 702 GkivELa~Dq~GSR----vLQklLe~aS~Eer~~IfeEI~p~ 739 (1049)
+....+-.++..|. +|+..|+....|.-.+|+++..+.
T Consensus 1446 DferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t 1487 (1710)
T KOG1070|consen 1446 DFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT 1487 (1710)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh
Confidence 44455556666664 566777777777777788876653
No 95
>PF01153 Glypican: Glypican; InterPro: IPR001863 Glypicans [, ] are a family of heparan sulphate proteoglycans which are anchored to cell membranes by a glycosylphosphatidylinositol (GPI) linkage. Six members (GPC1-6) are known in vertebrates []. Structurally, these proteins consist of three separate domains: A signal sequence; An extracellular domain of about 500 residues that contains 12 conserved cysteines probably involved in disulphide bonds and which also contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A C-terminal hydrophobic region which is post-translationally removed after formation of the GPI-anchor. ; GO: 0043395 heparan sulfate proteoglycan binding, 0005578 proteinaceous extracellular matrix, 0016020 membrane; PDB: 3ODN_A 4AD7_A 4ACR_C.
Probab=23.32 E-value=1.2e+03 Score=29.42 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=9.9
Q ss_pred cCchHHHHHHHHHhc
Q 001588 926 QQKFASNVIEKCLSF 940 (1049)
Q Consensus 926 ~~K~GSrVVEKcL~~ 940 (1049)
|..|=.+|+..||..
T Consensus 260 C~~yC~NVmrGCLa~ 274 (557)
T PF01153_consen 260 CRGYCLNVMRGCLAN 274 (557)
T ss_dssp BHHHHHHHHHHHTHH
T ss_pred chhHHHHHHHHHhhh
Confidence 444557788888764
No 96
>PLN03218 maturation of RBCL 1; Provisional
Probab=23.13 E-value=2e+03 Score=29.62 Aligned_cols=21 Identities=10% Similarity=0.210 Sum_probs=8.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 001588 933 VIEKCLSFGTPAERQALVNEM 953 (1049)
Q Consensus 933 VVEKcL~~as~k~Rk~IIkEL 953 (1049)
+|..|.+.+..++-..++++|
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHH
Confidence 333333334444444444444
No 97
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=22.94 E-value=5.3e+02 Score=33.83 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=7.2
Q ss_pred cCCCcHHHHHHHH
Q 001588 1021 AGGIYLPFLYNFF 1033 (1049)
Q Consensus 1021 ~ge~R~~l~~al~ 1033 (1049)
..+.|.++--.|.
T Consensus 341 ap~~~~~~Em~ll 353 (830)
T PRK07003 341 APDEYAGFTMTLL 353 (830)
T ss_pred CCCHHHHHHHHHH
Confidence 4555666555555
No 98
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=22.19 E-value=3.2e+02 Score=31.14 Aligned_cols=98 Identities=15% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHhhCChhHHHHHHHH-HHhhHHHhhc------CCCCchHHHHHHh-------hcCCHHHHHHHHHHHHHHHHHHh
Q 001588 824 VIQKCIECVPEDAIQFIVLT-FYDQVVTLST------HPYGCRVIQRVLE-------HCHDEKTQSIMMDEILQSVCMLA 889 (1049)
Q Consensus 824 VIQKlLE~lp~e~~e~Iis~-L~g~iveLst------hkyGS~VIQklLe-------~~~d~~~r~~LIeeI~~~l~~La 889 (1049)
||-.+++.-..+.+.++++. +..-+..... ...+..++||++. .|...+....+...+..-+..++
T Consensus 119 VIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~ 198 (262)
T PF04078_consen 119 VIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLV 198 (262)
T ss_dssp HHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHc
Q ss_pred cCccccHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Q 001588 890 QDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCL 938 (1049)
Q Consensus 890 ~DqyGNyVVQ~LLe~~~~~eR~~IIe~L~g~Iv~LS~~K~GSrVVEKcL 938 (1049)
.++.. ++++.+...+..|+.+..+-..+.+|+
T Consensus 199 ~~pS~-----------------RLLKhIIrCYlRLsdnprar~aL~~~L 230 (262)
T PF04078_consen 199 KQPSP-----------------RLLKHIIRCYLRLSDNPRAREALRQCL 230 (262)
T ss_dssp HS--H-----------------HHHHHHHHHHHHHTTSTTHHHHHHHHS
T ss_pred cCCCh-----------------hHHHHHHHHHHHHccCHHHHHHHHHhC
No 99
>PF07176 DUF1400: Alpha/beta hydrolase of unknown function (DUF1400); InterPro: IPR010802 This domain is specific to cyanobacterial proteins, its function and the function of the proteins it is associated with, are uncharacterised.
Probab=21.99 E-value=3.4e+02 Score=27.31 Aligned_cols=80 Identities=11% Similarity=0.081 Sum_probs=53.8
Q ss_pred hhHHHhhcCCchHHHHHHHHhcCChHHHHHHHHHHH-------HHHHHHhhcCCchhHHHHHHHHHHcCCC---cHHHHH
Q 001588 961 EPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIK-------VHLNALKKYTYGKHIVARVEKLVAAGGI---YLPFLY 1030 (1049)
Q Consensus 961 e~L~~La~D~~GNyVVQklLd~~dd~qRe~ILseLk-------~~L~~L~~~~yGk~IV~klEklv~~ge~---R~~l~~ 1030 (1049)
+.|...+.+.--+-=++..+...++++++.+-+-|. ..+..+..++.|+.++.++-+++..... ..++-.
T Consensus 19 ~dLe~fa~tG~~~~~L~~~~~ll~~~~~~~lr~~L~~~~~~~~~~~~~lL~S~~G~~lL~~lg~vi~~~~~~~g~~ALr~ 98 (127)
T PF07176_consen 19 SDLETFAETGEISPELAFYLNLLSPQQRQQLRELLNTPIPIDPVFLSQLLNSPIGERLLDQLGKVIRTPSGSNGQQALRS 98 (127)
T ss_pred HHHHHHHHcCCCCHHHHHHHHhcCHhhHHHHHHHHcCCCCCCHHHHHHHhCChHHHHHHHHHHHHhcCCCCcccHHHHHH
Confidence 345556666555665666666666666665555443 4467788999999999999999975443 445667
Q ss_pred HHHHhhhhcc
Q 001588 1031 NFFSSFAVLS 1040 (1049)
Q Consensus 1031 al~~af~~~~ 1040 (1049)
++..|..+..
T Consensus 99 Ali~aa~~~~ 108 (127)
T PF07176_consen 99 ALILAASDPE 108 (127)
T ss_pred HHHHHhhCCC
Confidence 7776665543
No 100
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=21.98 E-value=2e+03 Score=29.54 Aligned_cols=63 Identities=10% Similarity=0.177 Sum_probs=32.2
Q ss_pred cCccccHHHHHHHhhCChhhHHHHHHH---HHHHHHHHhcCchHHH---HHHHHHhcC------CHHHHHHHHHH
Q 001588 890 QDQYGNYVVQHVLEHGKPHERSAIIKK---LTGQIVQMSQQKFASN---VIEKCLSFG------TPAERQALVNE 952 (1049)
Q Consensus 890 ~DqyGNyVVQ~LLe~~~~~eR~~IIe~---L~g~Iv~LS~~K~GSr---VVEKcL~~a------s~k~Rk~IIkE 952 (1049)
.+.-=.+++++++....+......++. +++.+..-+.+++|++ ++-.+..++ +.+.|+..++.
T Consensus 206 ~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQa 280 (1233)
T KOG1824|consen 206 NRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQA 280 (1233)
T ss_pred CHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHH
Confidence 333345778888875443333333333 3355555566777754 333333333 44556655443
No 101
>KOG3821 consensus Heparin sulfate cell surface proteoglycan [Signal transduction mechanisms]
Probab=21.84 E-value=1.7e+03 Score=28.14 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=10.0
Q ss_pred cCchHHHHHHHHHhc
Q 001588 926 QQKFASNVIEKCLSF 940 (1049)
Q Consensus 926 ~~K~GSrVVEKcL~~ 940 (1049)
|.-|=.+|+..|+..
T Consensus 268 C~gYC~NVmrGClA~ 282 (563)
T KOG3821|consen 268 CYGYCLNVMRGCLAN 282 (563)
T ss_pred cHHHHHHHHHHHhhh
Confidence 445567777777764
No 102
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=21.82 E-value=1.9e+03 Score=28.90 Aligned_cols=47 Identities=30% Similarity=0.386 Sum_probs=31.7
Q ss_pred hhhhhcccCCHHHHHHHHHHHHHHHHHhHhcccccHHHHHHHhhcCHHHHH
Q 001588 752 VIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQT 802 (1049)
Q Consensus 752 VLQKLLe~gs~eqr~~Li~~Lkg~I~eLs~d~yGSrVLQkLLe~~s~eqr~ 802 (1049)
+++.+++ .+.+.|+...+.|...+.+|..+. +...|.++.+..+...
T Consensus 532 ~~~~~~~-~~~~~rr~~~~~lq~k~~~l~~n~---~LfeKgl~lF~dd~~t 578 (803)
T PLN03083 532 RRKALFT-ENAERRRRLLDNLQKKIDESFLNM---QLYEKALDLFEDDQST 578 (803)
T ss_pred HHHHHHh-cchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhCCccccc
Confidence 4667777 667788888888888877776665 3556666665544443
No 103
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=21.47 E-value=1.6e+03 Score=27.68 Aligned_cols=113 Identities=12% Similarity=0.157 Sum_probs=53.6
Q ss_pred HHhhCChhhHHHHHHHHHHHHHHHhcCchHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCchhHHHhhcCCchHH------
Q 001588 901 VLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANY------ 974 (1049)
Q Consensus 901 LLe~~~~~eR~~IIe~L~g~Iv~LS~~K~GSrVVEKcL~~as~k~Rk~IIkELlg~~~~~e~L~~La~D~~GNy------ 974 (1049)
++....+...+.|.. +...+.+....+--+.++..+++..-++.|...++-+. .|+..++|-.
T Consensus 364 il~~~~~~~~~~i~~-~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~----------~l~~~~Wg~~~i~~~~ 432 (503)
T PF10508_consen 364 ILTSGTDRQDNDILS-ITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQ----------ALAAQPWGQREICSSP 432 (503)
T ss_pred HHhcCCCCchHHHHH-HHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHH----------HHhcCHHHHHHHHhCc
Confidence 334344434445553 33333333333333336666666554666655444333 4555555433
Q ss_pred -HHHHHHhcCChHH------HHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHcCCC
Q 001588 975 -VVQKVLETCDDQQ------LELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGGI 1024 (1049)
Q Consensus 975 -VVQklLd~~dd~q------Re~ILseLk~~L~~L~~~~yGk~IV~klEklv~~ge~ 1024 (1049)
+|..+++...+.. |-.|++.|...........-..+.+.++.+.++.|..
T Consensus 433 gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~~~~~~~~~~~~~~kL~~yv~eGpy 489 (503)
T PF10508_consen 433 GFIEYLLDRSTETTKEGKEAKYDIIKALAKSSTNASSVFDDPEYLGKLQEYVREGPY 489 (503)
T ss_pred cHHhhhcCCCCCCCHHHHHHHHHHHHHHHhcccchhhcCCCHHHHHHHHHHHHcCCc
Confidence 3445555543332 2245555543333122222234555588998887765
No 104
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=21.47 E-value=2.1e+03 Score=33.42 Aligned_cols=38 Identities=8% Similarity=0.222 Sum_probs=19.8
Q ss_pred cCccccHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcC
Q 001588 890 QDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQ 927 (1049)
Q Consensus 890 ~DqyGNyVVQ~LLe~~~~~eR~~IIe~L~g~Iv~LS~~ 927 (1049)
...+|...+++++....+..+..|+-.+...+...+.+
T Consensus 2041 ~~~~~~~~~l~~~~~~~~~~~drLl~~~~r~~~k~a~d 2078 (3550)
T KOG0889|consen 2041 SNVFGTLTLLKTLCSNNPDYLDRLLPGFMRCFSKAAKD 2078 (3550)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555555555555555555555555444443
No 105
>PF05794 Tcp11: T-complex protein 11; InterPro: IPR008862 This family consists of several eukaryotic T-complex protein 11 (Tcp11) related sequences. Tcp11 is only expressed in fertile adult mammalian testes and is thought to be important in sperm function and fertility. The family also contains the Saccharomyces cerevisiae Sok1 protein which is known to suppress cyclic AMP-dependent protein kinase mutants [].
Probab=21.45 E-value=3e+02 Score=32.85 Aligned_cols=163 Identities=10% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHhHHhhhccccccchhhhhccc-CCHHHHHHHHHHHHHHHHHhHhcccccHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 001588 734 QEIMPQALSLMTDVFGNYVIQKFFEH-GTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHI 812 (1049)
Q Consensus 734 eEI~p~~leL~tD~fGNhVLQKLLe~-gs~eqr~~Li~~Lkg~I~eLs~d~yGSrVLQkLLe~~s~eqr~~Lv~EL~~~I 812 (1049)
+.+.+...+.|.+.|=..|.+.|-.. -.......|++.|++.+..|. ..+.-+.+-+.++.+ -|.+++....
T Consensus 22 ~~~~~~vk~~~~~afWd~l~~el~~~~~~~~~~~~Ll~~ike~L~~ll----~~~~~~~I~e~LD~~---li~Qq~~~g~ 94 (441)
T PF05794_consen 22 DSLEGRVKETMHKAFWDALREELEQDPPDYSRLPQLLEEIKEILLSLL----PSRLRQEIEEVLDLE---LIRQQLEHGV 94 (441)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHHhc----CHHHHHHHHHHCChH---HHHHHHhcCC
Q ss_pred HHHhccCCCchHHHHHHhhCChhHHHHHHHHHHhhHHHhhcCCCCchHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCc
Q 001588 813 MRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQ 892 (1049)
Q Consensus 813 ~eLvkDqnGNhVIQKlLE~lp~e~~e~Iis~L~g~iveLsthkyGS~VIQklLe~~~d~~~r~~LIeeI~~~l~~La~Dq 892 (1049)
.. ......+++..+-++|.+ .++..++.+...+.+=+....+..+|+.+-... .+++.++-.+..-.-..
T Consensus 95 ~D--~~~l~~~i~~~l~~~CAP-~RD~~v~~l~~~~~~~~~~~~~~~~V~~lr~if-------~~le~MklD~AN~~i~~ 164 (441)
T PF05794_consen 95 LD--LVKLARFIISLLKKLCAP-MRDEEVKALVEKIEEGCTESSATDIVDGLRFIF-------EILELMKLDMANFQIRS 164 (441)
T ss_pred cC--HHHHHHHHHHHHHHhCCC-CCcHHHHHHHHHHHhccccCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q ss_pred cccHHHHHHHhhCChhhHHHH
Q 001588 893 YGNYVVQHVLEHGKPHERSAI 913 (1049)
Q Consensus 893 yGNyVVQ~LLe~~~~~eR~~I 913 (1049)
.-.+++++-+++...+..+.+
T Consensus 165 ~rp~L~~~sv~yEr~~F~~~l 185 (441)
T PF05794_consen 165 LRPQLIEHSVEYERKKFQERL 185 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 106
>COG4399 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.39 E-value=1.4e+03 Score=27.19 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=15.7
Q ss_pred HHHhcCccccHHHHHHHhhCChhhHHHHHHHHHH
Q 001588 886 CMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTG 919 (1049)
Q Consensus 886 ~~La~DqyGNyVVQ~LLe~~~~~eR~~IIe~L~g 919 (1049)
..|..+.|+++-+..+=+......++.|.+.+..
T Consensus 235 q~Ll~ne~~~~~~k~L~e~~~~~~~~~~~~~~s~ 268 (376)
T COG4399 235 QQLLTNEWPTFKEKPLNELTDEVVRNALAESLSV 268 (376)
T ss_pred HHHHHhhcchhchhhHHHhhHHHHHHHHHHHHHH
Confidence 3444455555444444444444445555554433
No 107
>PTZ00429 beta-adaptin; Provisional
Probab=21.31 E-value=1.9e+03 Score=28.66 Aligned_cols=37 Identities=5% Similarity=0.153 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCchHHHHHHHHHhcCC---HHHHHHHHHHH
Q 001588 917 LTGQIVQMSQQKFASNVIEKCLSFGT---PAERQALVNEM 953 (1049)
Q Consensus 917 L~g~Iv~LS~~K~GSrVVEKcL~~as---~k~Rk~IIkEL 953 (1049)
-++-+..|+.......|+..+..+.. .+.+++.|+.+
T Consensus 353 KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAI 392 (746)
T PTZ00429 353 KLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAI 392 (746)
T ss_pred HHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 34567777777778888887777653 44555555554
No 108
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=21.22 E-value=1.4e+03 Score=28.31 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=40.2
Q ss_pred hhcCCHHHHHHHHHHHHHhHHhhhccccccchhhhhccc---C------CHHHHHHHHHHHHHHHHHhHhc
Q 001588 721 LETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEH---G------TASQVRELADQLTGHVLTLSLQ 782 (1049)
Q Consensus 721 Le~aS~Eer~~IfeEI~p~~leL~tD~fGNhVLQKLLe~---g------s~eqr~~Li~~Lkg~I~eLs~d 782 (1049)
+-.+.++++.+++.++...+..=|.|..+ +|.+=.+ + ..+-.++|+..++.++.+|-.-
T Consensus 97 ~vea~p~er~~LLrdLedFAF~Gcpd~~~---lq~~~s~~~~~~~~lekq~e~qkeLi~QLk~Ql~dLE~~ 164 (621)
T KOG3759|consen 97 MVEADPSERLKLLRDLEDFAFKGCPDMNE---LQRLRSESESGNDVLEKQNERQKELIKQLKEQLEDLERT 164 (621)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCCCcccc---cccccccccccchhhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999888888543 1221111 1 1123567899999988887543
No 109
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=21.16 E-value=1.9e+03 Score=28.94 Aligned_cols=212 Identities=9% Similarity=0.040 Sum_probs=0.0
Q ss_pred HhhcCHHHHHHHHHHHH---HHHHHHhccCCCchHHHHHHhhCChhHHHHH-HHHHHhhHHHhh---cCCCCchHHHHHH
Q 001588 793 IEVVELDQQTQMVKELD---GHIMRCVRDQNGNHVIQKCIECVPEDAIQFI-VLTFYDQVVTLS---THPYGCRVIQRVL 865 (1049)
Q Consensus 793 Le~~s~eqr~~Lv~EL~---~~I~eLvkDqnGNhVIQKlLE~lp~e~~e~I-is~L~g~iveLs---thkyGS~VIQklL 865 (1049)
.+.++.+....|++-|. .++.-++...+-..|+..|...|..-.+..+ -+.+...+..++ .-.+.-.++..++
T Consensus 129 ad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa 208 (824)
T PRK07764 129 AHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVI 208 (824)
T ss_pred hhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHhhCChhhHHHHHHHHHH--------HHHHHhcCchH-HHHHHH
Q 001588 866 EHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTG--------QIVQMSQQKFA-SNVIEK 936 (1049)
Q Consensus 866 e~~~d~~~r~~LIeeI~~~l~~La~DqyGNyVVQ~LLe~~~~~eR~~IIe~L~g--------~Iv~LS~~K~G-SrVVEK 936 (1049)
+.+... ...++.+|-+-+...-........|..++.....+....+++.|.. .+..|...++- -+++..
T Consensus 209 ~~sgGd--lR~Al~eLEKLia~~~~~~IT~e~V~allg~~~~~~I~~lidAL~~~D~a~al~~l~~Li~~G~dp~~~L~~ 286 (824)
T PRK07764 209 RAGGGS--VRDSLSVLDQLLAGAGPEGVTYERAVALLGVTDSALIDEAVDALAAGDGAALFGTVDRVIEAGHDPRRFAED 286 (824)
T ss_pred HHcCCC--HHHHHHHHHHHHhhcCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHH
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCchhHHHhhcC--CchHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCchhHHHH
Q 001588 937 CLSFGTPAERQALVNEMLGSIEENEPLQVMMKD--QFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVAR 1014 (1049)
Q Consensus 937 cL~~as~k~Rk~IIkELlg~~~~~e~L~~La~D--~~GNyVVQklLd~~dd~qRe~ILseLk~~L~~L~~~~yGk~IV~k 1014 (1049)
++. ..|+.++-... .+.......+ .+---.+.......+......+++.|..-+..++.+..-+..++.
T Consensus 287 LL~----~fRDLL~vka~-----~~~~~~~l~~~p~d~~~~L~~qA~~~s~~~L~r~ie~l~ea~~~lrgn~nprL~LEl 357 (824)
T PRK07764 287 LLE----RLRDLIVLQAV-----PDAAERGLVDAPADQLDRMRAQAQRLGPAELTRAADVVNDGLTEMRGATSPRLLLEL 357 (824)
T ss_pred HHH----HHHHHHHHHhc-----CcchhhhhccCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHH
Q ss_pred H
Q 001588 1015 V 1015 (1049)
Q Consensus 1015 l 1015 (1049)
+
T Consensus 358 L 358 (824)
T PRK07764 358 L 358 (824)
T ss_pred H
No 110
>PRK15362 pathogenicity island 2 effector protein SseC; Provisional
Probab=20.37 E-value=1e+03 Score=29.20 Aligned_cols=85 Identities=18% Similarity=0.308 Sum_probs=39.2
Q ss_pred cCccccchHHHHHHHHHHHhcCCCcCHHHHHhhhcCCHHHHHHHHHHHHHhHHhhhccccccchhhhhcccCCHHHHHHH
Q 001588 689 SNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVREL 768 (1049)
Q Consensus 689 sneer~~~LseI~GkivELa~Dq~GSRvLQklLe~aS~Eer~~IfeEI~p~~leL~tD~fGNhVLQKLLe~gs~eqr~~L 768 (1049)
.++|+|...-++.|++ |.||.++=-.|+....-.--+--+.|..-.-+++..-.|--+++ -+..++.+..+.+
T Consensus 211 ad~ek~q~vidVagkv------Ql~~E~vamalD~fq~gRai~aar~i~k~ae~vlk~g~ge~L~e-ai~~gs~e~i~~l 283 (473)
T PRK15362 211 ADHDKCQAIIDVASKI------QLGCEIVAMALDVFQIGRAFMATRGIAKAAEKVLDSGAGEELVE-RMVGGSEEAIEEL 283 (473)
T ss_pred CCHHHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchHHHHH-HHHhccHHHHHHH
Confidence 3446666666666665 44444443333332111111111122222333333333333332 4555667777777
Q ss_pred HHHHHHHHHHhH
Q 001588 769 ADQLTGHVLTLS 780 (1049)
Q Consensus 769 i~~Lkg~I~eLs 780 (1049)
.+.+-.++.+..
T Consensus 284 A~~~GkqVs~qv 295 (473)
T PRK15362 284 AEEFGKQVSEQV 295 (473)
T ss_pred HHHHHHHHHHHH
Confidence 777766655443
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=20.05 E-value=9.6e+02 Score=33.52 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=26.7
Q ss_pred hhcCccccchHHHHHHHHHHHhcCCCcCHHHHHhhhcC---CHHHHHHHHHHHHH
Q 001588 687 FKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETA---TTEEKNMVFQEIMP 738 (1049)
Q Consensus 687 f~sneer~~~LseI~GkivELa~Dq~GSRvLQklLe~a---S~Eer~~IfeEI~p 738 (1049)
..++..-.+.|-+...+.++++-=..+-.+-+..|..- ..+|+.+|+-.+..
T Consensus 1451 vrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lN 1505 (1710)
T KOG1070|consen 1451 VRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLN 1505 (1710)
T ss_pred HhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHh
Confidence 34444444555444444444433222333456777666 45566667666554
Done!