Query 001588
Match_columns 1049
No_of_seqs 297 out of 1714
Neff 5.3
Searched_HMMs 29240
Date Tue Mar 26 16:13:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001588.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_887-890//hhsearch_pdb/001588hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gvo_A Pumilio 2, pumilio homo 1.0 1 1 528.5 24.4 341 680-1021 4-345 (351)
2 3k49_A MRNA-binding protein PU 1.0 1 1 525.0 22.8 345 679-1024 3-366 (369)
3 3k62_A FEM-3 mRNA-binding fact 1.0 1 1 510.7 25.0 345 663-1023 4-407 (412)
4 3v71_A PUF (pumilio/FBF) domai 1.0 1 1 489.5 23.9 323 695-1017 11-380 (382)
5 3bwt_A Protein PUF4; pumilio, 1.0 1 1 470.0 19.2 320 693-1016 4-332 (333)
6 3bwt_A Protein PUF4; pumilio, 1.0 1 1 347.4 19.2 280 732-1020 7-296 (333)
7 3gvo_A Pumilio 2, pumilio homo 1.0 1 1 340.6 21.2 301 676-983 33-343 (351)
8 3k49_A MRNA-binding protein PU 1.0 1 1 339.8 15.8 315 712-1034 3-338 (369)
9 3v71_A PUF (pumilio/FBF) domai 1.0 1 1 311.0 22.2 282 733-1021 13-329 (382)
10 3k62_A FEM-3 mRNA-binding fact 1.0 1 1 300.7 26.3 278 737-1020 28-348 (412)
No 1
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=1.00 E-value=1 Score=528.45 Aligned_cols=341 Identities=55% Similarity=0.946 Sum_probs=327.8
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCC
Q ss_conf 67799862027344311987799999983087737999996302999999999999988698510264545213154013
Q 001588 680 ASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEH 759 (1049)
Q Consensus 680 ~s~LLeEf~~neer~~~LseIkGkIveLa~Dq~GSRvIQklLe~aS~Eer~~IfeEI~~~ileLatD~fGShVIQKLLe~ 759 (1049)
||.+||+|++++.+.+.|++++|+++++++||+|||+||++|+.++++++..||+++.+++.+||+|+||||||||+|++
T Consensus 4 ~~~l~e~~r~~~~~~~~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~ 83 (351)
T 3gvo_A 4 RSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEF 83 (351)
T ss_dssp CCHHHHHHHTTCCTTCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHH
T ss_pred CCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 42789997578989968999874999992698636999999713989999999999988589897181662999999960
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
Q ss_conf 79989999999987779996721442199999875169999999999999789898605777668999996199468999
Q 001588 760 GTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQF 839 (1049)
Q Consensus 760 gs~eqr~~Lie~Lkg~I~~Ls~d~yGSrVIQklLe~as~eqr~~Lv~EL~g~I~eLvkDqnGNhVIQKiLE~~p~e~ie~ 839 (1049)
++++++..|++.+.+++.+|+.|+|||||||++|+.++.+++..|++||.+++..|++|++||||+|+||++++++.+.+
T Consensus 84 ~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~ 163 (351)
T 3gvo_A 84 GSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQF 163 (351)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 99999999999987669988607886899999999678999999999853169999871013279999997689999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 99987765877204988754788987306988899999999999999971196500999999960890019999999999
Q 001588 840 IVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTG 919 (1049)
Q Consensus 840 Iis~L~g~iveLs~hkyGS~VIQkiLe~~~d~~~r~~LIeeI~~~l~~La~Dq~GNyVVQ~ILe~~~~keR~~IIe~Llg 919 (1049)
|++.+.+++..+++|++||+|+|++|+++. ++++..+++++.+++..|++|+|||||||++|+++.++.+..|++.+++
T Consensus 164 i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~-~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~ 242 (351)
T 3gvo_A 164 IIDAFKGQVFVLSTHPYGCRVIQRILEHCT-AEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRG 242 (351)
T ss_dssp HHHHTTTTHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 999998889999807574899999999789-9999999999865499618994387999999996753449999999998
Q ss_pred HHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC-CHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9999811904899999999509999999999999518899-445998430896479999997419968999999999998
Q 001588 920 QIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEE-NEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVH 998 (1049)
Q Consensus 920 ~IvsLS~~K~GS~VIEklL~~as~k~Rk~II~ELlg~t~~-~e~L~~La~Dq~GNyVVQklLe~~dd~qRe~ILseLk~~ 998 (1049)
+++.|+++||||+|||+||+++++++|+.|+++++...++ ...+..|+.|+|||||||++|+.+++.+|+.|++.|+++
T Consensus 243 ~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~~r~~i~~~i~~~ 322 (351)
T 3gvo_A 243 KVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPH 322 (351)
T ss_dssp CHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHHHHHHHHHHHGGG
T ss_pred HHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 89998549388999999997599999999999986126788727988069962679999999858999999999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 99884168843699999999970
Q 001588 999 LNALKKYTYGKHIVARVEKLVAA 1021 (1049)
Q Consensus 999 L~~L~~~~yGkhIV~kiEkli~~ 1021 (1049)
+..|+.++||+||++++++++..
T Consensus 323 ~~~L~~~~~g~~i~~kl~~~~~~ 345 (351)
T 3gvo_A 323 ITTLRKYTYGKHILAKLEKYYLK 345 (351)
T ss_dssp HHHHTTSTTTHHHHHHHHHHTC-
T ss_pred HHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99983698469999999998755
No 2
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=1.00 E-value=1 Score=524.99 Aligned_cols=345 Identities=42% Similarity=0.717 Sum_probs=327.6
Q ss_pred HHHHHHHHHHCCCC-----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 46779986202734-----4311987799999983087737999996302999999999999988698510264545213
Q 001588 679 FASSLLDEFKSNKT-----KCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVI 753 (1049)
Q Consensus 679 ~~s~LLeEf~~nee-----r~~~LseIkGkIveLa~Dq~GSRvIQklLe~aS~Eer~~IfeEI~~~ileLatD~fGShVI 753 (1049)
+||.+||+|+++.. +.+.++++.|+++++|+||+|||+||++|++++.++++.||+|+.+++.+||+|+||||||
T Consensus 3 ~~s~lle~~~~~~~~~~~~~~~~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vv 82 (369)
T 3k49_A 3 HRSPLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVI 82 (369)
T ss_dssp --CHHHHHHHTTCC------CCCGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHH
T ss_pred CCCHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 75254899867998655444603999998999997287230999998662999999999999999899986485115589
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 15401379989999999987779996721442199999875169999999999999789898605777668999996199
Q 001588 754 QKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVP 833 (1049)
Q Consensus 754 QKLLe~gs~eqr~~Lie~Lkg~I~~Ls~d~yGSrVIQklLe~as~eqr~~Lv~EL~g~I~eLvkDqnGNhVIQKiLE~~p 833 (1049)
||+|++++++++..|++.+.+++..|+.|+|||||||++|++++.+++..++.||.+++..|++|++||||||+||++++
T Consensus 83 Qkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~ 162 (369)
T 3k49_A 83 QKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIP 162 (369)
T ss_dssp HHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSC
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
T ss_conf 99997399999999999986208988517554899999997589999999999999999999517445549999997199
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHH----
Q ss_conf 4689999998776587720498875478898730698889999999999999997119650099999996089001----
Q 001588 834 EDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHE---- 909 (1049)
Q Consensus 834 ~e~ie~Iis~L~g~iveLs~hkyGS~VIQkiLe~~~d~~~r~~LIeeI~~~l~~La~Dq~GNyVVQ~ILe~~~~ke---- 909 (1049)
++.+.+|++.+.+++..|++|++||+|+|+|++++. ++.+..+++++.+.+..|++|+|||||||++|+.+.++.
T Consensus 163 ~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~-~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~ 241 (369)
T 3k49_A 163 IEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGS-SEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMV 241 (369)
T ss_dssp GGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf 999999999999999999678766829999998689-9999999999999999996597299999999953890322357
Q ss_pred --HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-------CCCHHHHHHHCCCCHHHHHHHHH
Q ss_conf --999999999999998119048999999995099999999999995188-------99445998430896479999997
Q 001588 910 --RSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSI-------EENEPLQVMMKDQFANYVVQKVL 980 (1049)
Q Consensus 910 --R~~IIe~Llg~IvsLS~~K~GS~VIEklL~~as~k~Rk~II~ELlg~t-------~~~e~L~~La~Dq~GNyVVQklL 980 (1049)
+..|++.+.+++++|+++||||+|||+||.++++++|+.|+++++... ++++.+..|++|+|||||||++|
T Consensus 242 ~~~~~i~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNyViq~~l 321 (369)
T 3k49_A 242 DIKQEIIETVANNVVEYSKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLV 321 (369)
T ss_dssp HHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
T ss_conf 67999999999999999861575699999998399999999999985556432112356527999984730589999999
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHCCCC
Q ss_conf 419968999999999998998841-68843699999999970787
Q 001588 981 ETCDDQQLELILNRIKVHLNALKK-YTYGKHIVARVEKLVAAGGI 1024 (1049)
Q Consensus 981 e~~dd~qRe~ILseLk~~L~~L~~-~~yGkhIV~kiEkli~~g~~ 1024 (1049)
+.+++.+|+.|+++|++++.+|+. ++||+|+++++|++++.++.
T Consensus 322 ~~~~~~~~~~l~~~i~p~l~~L~~~~~~G~~~~~~~e~~~~~~~~ 366 (369)
T 3k49_A 322 NVSEGEGKKLIVIAIRAYLDKLNKSNSLGNRHLASVEKLAALVEN 366 (369)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHC-
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 967888999999999999999851466761599999999998754
No 3
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=1.00 E-value=1 Score=510.67 Aligned_cols=345 Identities=28% Similarity=0.546 Sum_probs=313.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHH--HHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHHHHHHHH
Q ss_conf 88888776899998244677998620273443119877--999999830877379999963029-999999999999886
Q 001588 663 VMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEI--AGHVVEFSADQYGSRFIQQKLETA-TTEEKNMVFQEIMPQ 739 (1049)
Q Consensus 663 ~~~~w~~~~g~~m~d~~~s~LLeEf~~neer~~~LseI--kGkIveLa~Dq~GSRvIQklLe~a-S~Eer~~IfeEI~~~ 739 (1049)
.++.|+.++.+++... +.|.++ +|+++++|+||+||||||++|+.+ +.++++.||+|+.++
T Consensus 4 ~~~~w~~~~~~~~~~~----------------~~L~~~~~~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~ 67 (412)
T 3k62_A 4 VLPTWSLDSNGEMRSR----------------LSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGR 67 (412)
T ss_dssp -CCGGGBCTTSSBCTT----------------CCHHHHHHHTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSS
T ss_pred CCCCCHHCCCCCCCCC----------------CCHHHHHHCCCCHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 6864233026999987----------------849999748771999649756899999865089989999999999722
Q ss_pred ---HHHHHCCCCCCCHHHHHCCCCCH-------HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHH-
Q ss_conf ---98510264545213154013799-------8999999998777999672144219999987516999999999999-
Q 001588 740 ---ALSLMTDVFGNYVIQKFFEHGTA-------SQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKEL- 808 (1049)
Q Consensus 740 ---ileLatD~fGShVIQKLLe~gs~-------eqr~~Lie~Lkg~I~~Ls~d~yGSrVIQklLe~as~eqr~~Lv~EL- 808 (1049)
+.+||+|+||||||||+|+++++ +++..|++.+.+++..|+.|+|||||||++|++++.+++..++.||
T Consensus 68 ~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~~q~~~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~ 147 (412)
T 3k62_A 68 KDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALP 147 (412)
T ss_dssp HHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 56799998372988999999984891123243999999999999999999817452499999999578889999999970
Q ss_pred -HHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHCCCCCCHHHHHHHHHCCCH-----------HHH
Q ss_conf -9789898605777668999996199468999999877--65877204988754788987306988-----------899
Q 001588 809 -DGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFY--DQVVTLSTHPYGCRVIQRVLEHCHDE-----------KTQ 874 (1049)
Q Consensus 809 -~g~I~eLvkDqnGNhVIQKiLE~~p~e~ie~Iis~L~--g~iveLs~hkyGS~VIQkiLe~~~d~-----------~~r 874 (1049)
.+++..|++|++|||||||||++++++.+++|++.+. +++.++++|+|||+|+|+||++|.+. +++
T Consensus 148 ~~~~i~~L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr 227 (412)
T 3k62_A 148 RDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLR 227 (412)
T ss_dssp CSHHHHHHHHCTTTHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHH
T ss_pred CCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 46018999719643699999999699999999999871413699985596359999999996674112200100038899
Q ss_pred H----HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHH-HHHHHHH-HHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHH
Q ss_conf 9----999999999999711965009999999608900-1999999-999999998119048999999995099999999
Q 001588 875 S----IMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPH-ERSAIIK-KLTGQIVQMSQQKFASNVIEKCLSFGTPAERQA 948 (1049)
Q Consensus 875 ~----~LIeeI~~~l~~La~Dq~GNyVVQ~ILe~~~~k-eR~~IIe-~Llg~IvsLS~~K~GS~VIEklL~~as~k~Rk~ 948 (1049)
. .++++|..++..|++|+|||||||++|+++.++ .+..|++ .|+++++.||++||||+||||||+++++++|+.
T Consensus 228 ~~il~~L~~~I~~~~~~L~~dq~GNyViQ~iL~~g~~~~~r~~ii~~~l~~~~~~LS~~KfgSnVVek~L~~~~~~~r~~ 307 (412)
T 3k62_A 228 ERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPLELLAE 307 (412)
T ss_dssp HHHHHHHHHHHHHTHHHHHHSTTTHHHHHHHHHCGGGHHHHHHHHHHHTTTCHHHHHTSTTHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHH
T ss_conf 99999999999999999864842029999999629905579999999999889999604076899999998599999999
Q ss_pred HHHHHHCC----C-CCCHHHHHHHCCCCHHHHHHHHHHCCCHH--------------------HHHHHHHHHHHHHHHHH
Q ss_conf 99999518----8-99445998430896479999997419968--------------------99999999999899884
Q 001588 949 LVNEMLGS----I-EENEPLQVMMKDQFANYVVQKVLETCDDQ--------------------QLELILNRIKVHLNALK 1003 (1049)
Q Consensus 949 II~ELlg~----t-~~~e~L~~La~Dq~GNyVVQklLe~~dd~--------------------qRe~ILseLk~~L~~L~ 1003 (1049)
|++|++.. + .+++.+..|++|+|||||||++|+++++. .++.|+.++++|...|+
T Consensus 308 ii~ei~~~~~~~~~~~~~~l~~L~~DqyGNYViQ~~L~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~L~ 387 (412)
T 3k62_A 308 MMDEIFDGYIPHPDTGKDALDIMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDWLKKLHSRVTKERHRLS 387 (412)
T ss_dssp HHHHHHHSSCCCTTTCCCHHHHHHHSTTHHHHHHHHHHHHHHHHTTSSCCEETTEETHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999850357765451699998669936899999999754633220110122113445467899999999988788744
Q ss_pred HCCCCHHHHHHHHHHHHCCC
Q ss_conf 16884369999999997078
Q 001588 1004 KYTYGKHIVARVEKLVAAGG 1023 (1049)
Q Consensus 1004 ~~~yGkhIV~kiEkli~~g~ 1023 (1049)
.++|||||+++++++..++.
T Consensus 388 ~~~~Gk~i~~~l~~~~~~~~ 407 (412)
T 3k62_A 388 RFSSGKKMIETLANLRSTHP 407 (412)
T ss_dssp TSHHHHHHHHHHHHHHC---
T ss_pred CCCCCCHHHHHHHHHHCCCC
T ss_conf 69971289999997523377
No 4
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=489.47 Aligned_cols=323 Identities=27% Similarity=0.534 Sum_probs=293.6
Q ss_pred CHHHHH--HHHHHHHHCCCCCCHHHHHHHHCCCHHH-HHHHHHHHH---HHHHHHHCCCCCCCHHHHHCCCCCHHHHHHH
Q ss_conf 119877--9999998308773799999630299999-999999998---8698510264545213154013799899999
Q 001588 695 FELSEI--AGHVVEFSADQYGSRFIQQKLETATTEE-KNMVFQEIM---PQALSLMTDVFGNYVIQKFFEHGTASQVREL 768 (1049)
Q Consensus 695 ~~LseI--kGkIveLa~Dq~GSRvIQklLe~aS~Ee-r~~IfeEI~---~~ileLatD~fGShVIQKLLe~gs~eqr~~L 768 (1049)
+.|.++ +|+++++++||+||||||++|+.++.++ +..||+++. +++.+||+|+||||||||+|++++++++..+
T Consensus 11 ~~L~~~~~~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~~l 90 (382)
T 3v71_A 11 ISLEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQREL 90 (382)
T ss_dssp CCHHHHHHTTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHCCCEEHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHH
T ss_conf 74998840887700304871029999870438868999999999986277899996282887999999985999999999
Q ss_pred HHH-HHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHH-
Q ss_conf 999-877799967214421999998751699999999999997-89898605777668999996199468999999877-
Q 001588 769 ADQ-LTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDG-HIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFY- 845 (1049)
Q Consensus 769 ie~-Lkg~I~~Ls~d~yGSrVIQklLe~as~eqr~~Lv~EL~g-~I~eLvkDqnGNhVIQKiLE~~p~e~ie~Iis~L~- 845 (1049)
+.. +.+++..|+.|+|||||||++|++++.+++..|+.+|.+ ++..|++|++|||||||||++++++.+++|++.+.
T Consensus 91 i~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~Ii~~~~~ 170 (382)
T 3v71_A 91 LRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLSS 170 (382)
T ss_dssp HHHHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHHHHHHHS
T ss_pred HHHHHCCHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHC
T ss_conf 99973113988773750569999999978999999999985412669996185615199999997899999999999954
Q ss_pred -HHHHHHHCCCCCCHHHHHHHHHCCCHHH----------HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCH--HHHHH
Q ss_conf -6587720498875478898730698889----------9999999999999971196500999999960890--01999
Q 001588 846 -DQVVTLSTHPYGCRVIQRVLEHCHDEKT----------QSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKP--HERSA 912 (1049)
Q Consensus 846 -g~iveLs~hkyGS~VIQkiLe~~~d~~~----------r~~LIeeI~~~l~~La~Dq~GNyVVQ~ILe~~~~--keR~~ 912 (1049)
+++..+++|+|||+|+|+||++|.+..+ ...++++|..++..|++|+|||||||++|+++.+ +.|..
T Consensus 171 ~~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~e~~r~~ 250 (382)
T 3v71_A 171 GDSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDT 250 (382)
T ss_dssp TTHHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTHHHHHHH
T ss_pred CCCHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHH
T ss_conf 53117682695115999999996887642114557899999999999998999864752019999998449974788999
Q ss_pred HHHH-HHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCC-----CCCCHHHHHHHCCCCHHHHHHHHHHCCCHH
Q ss_conf 9999-9999999811904899999999509999999999999518-----899445998430896479999997419968
Q 001588 913 IIKK-LTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGS-----IEENEPLQVMMKDQFANYVVQKVLETCDDQ 986 (1049)
Q Consensus 913 IIe~-Llg~IvsLS~~K~GS~VIEklL~~as~k~Rk~II~ELlg~-----t~~~e~L~~La~Dq~GNyVVQklLe~~dd~ 986 (1049)
|+.+ |.++++.|+++||||+|||+||+++++++|+.|++|++.. ...++.|..|++|+|||||||++|+++++.
T Consensus 251 ii~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L~~~~~~ 330 (382)
T 3v71_A 251 IIDKCLLRNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMISICTAA 330 (382)
T ss_dssp HHHHTTTTCHHHHTTSTTHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCC
T ss_conf 99999999899996570675999999986999999999999982134555565258999877997139999999974340
Q ss_pred -------------------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf -------------------9999999999989988416884369999999
Q 001588 987 -------------------QLELILNRIKVHLNALKKYTYGKHIVARVEK 1017 (1049)
Q Consensus 987 -------------------qRe~ILseLk~~L~~L~~~~yGkhIV~kiEk 1017 (1049)
.+++|++++++|+..|+.++||+||+++++|
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~Gk~i~~~l~~ 380 (382)
T 3v71_A 331 LIGKEERELPPAILLLYSGWYEKMKQRVLQHASRLERFSSGKKIIDSVMR 380 (382)
T ss_dssp CC-----CCCTTTHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred CCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 23410012305677654689999999999889876118863899999873
No 5
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=1.00 E-value=1 Score=470.01 Aligned_cols=320 Identities=30% Similarity=0.484 Sum_probs=294.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 43119877999999830877379999963029999999999999886985102645452131540137998999999998
Q 001588 693 KCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQL 772 (1049)
Q Consensus 693 r~~~LseIkGkIveLa~Dq~GSRvIQklLe~aS~Eer~~IfeEI~~~ileLatD~fGShVIQKLLe~gs~eqr~~Lie~L 772 (1049)
++..+++++|+++++++||+|||+||++|++++.+++..||+|+.+++.+||+|+||||||||+|++++++++..|++.+
T Consensus 4 ~~~~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~ 83 (333)
T 3bwt_A 4 ADAVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKIS 83 (333)
T ss_dssp TTCCGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 54869999979999965847139999987629999999999999988999955853279999999629999999999998
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 7779996721442199999875169-999999999999789898605777668999996199468999999877658772
Q 001588 773 TGHVLTLSLQMYGCRVIQKAIEVVE-LDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTL 851 (1049)
Q Consensus 773 kg~I~~Ls~d~yGSrVIQklLe~as-~eqr~~Lv~EL~g~I~eLvkDqnGNhVIQKiLE~~p~e~ie~Iis~L~g~iveL 851 (1049)
.+++.+|++|+|||||||+++++++ .+++..++++|.+++..|++|++||||||+||++++++.+++|++.+.+++..|
T Consensus 84 ~~~~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l~~~~~~l 163 (333)
T 3bwt_A 84 SPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDI 163 (333)
T ss_dssp GGGHHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 74899998555552899988986381999999999999989999419762689999999779988999999999989999
Q ss_pred HCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHH----HHHHHHHHHHHHHHHHHCC
Q ss_conf 049887547889873069888999999999999999711965009999999608900----1999999999999998119
Q 001588 852 STHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPH----ERSAIIKKLTGQIVQMSQQ 927 (1049)
Q Consensus 852 s~hkyGS~VIQkiLe~~~d~~~r~~LIeeI~~~l~~La~Dq~GNyVVQ~ILe~~~~k----eR~~IIe~Llg~IvsLS~~ 927 (1049)
++|++||+|+|+|++++. +.++..+++++.+.+..|+.|+|||||||++|+++.++ .+..|++.+++++.+|+++
T Consensus 164 ~~~~~Gs~Vvq~~l~~~~-~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~~~~~~Ls~~ 242 (333)
T 3bwt_A 164 ATHRHGCCVLQRCLDHGT-TEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIH 242 (333)
T ss_dssp HTSTTHHHHHHHHHHHCC-HHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHGGGHHHHHTS
T ss_pred HCCCHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 658361799999998299-9999999999999899980598289999999983872002036999999999999999706
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHH---HHHHHHHHHHHHH-HHHH
Q ss_conf 04899999999509999999999999518899445998430896479999997419968---9999999999989-9884
Q 001588 928 KFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQ---QLELILNRIKVHL-NALK 1003 (1049)
Q Consensus 928 K~GS~VIEklL~~as~k~Rk~II~ELlg~t~~~e~L~~La~Dq~GNyVVQklLe~~dd~---qRe~ILseLk~~L-~~L~ 1003 (1049)
+|||+|+|+||+.+ ..++.++.+++.... .+.+..|+.|+|||||||++|+.++++ .++.|+++|++++ .+|+
T Consensus 243 k~gs~Vvek~l~~~--~~~~~ii~ell~~~~-~~~l~~L~~d~~gnyViq~~l~~~~~~~~~~~~~l~~~l~p~l~~~lr 319 (333)
T 3bwt_A 243 KFGSNVIEKILKTA--IVSEPMILEILNNGG-ETGIQSLLNDSYGNYVLQTALDISHKQNDYLYKRLSEIVAPLLVGPIR 319 (333)
T ss_dssp TTHHHHHHHHHTSH--HHHHHHHHHHHHTTH-HHHHHHHHTSTTHHHHHHHHHHHHHHHCHHHHHHHHHHHGGGCCGGGG
T ss_pred CHHHHHHHHHHCCC--CHHHHHHHHHHHCCC-CHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHC
T ss_conf 27799999998062--016999999982468-567999871880789999999966686599999999999874556546
Q ss_pred HCCCCHHHHHHHH
Q ss_conf 1688436999999
Q 001588 1004 KYTYGKHIVARVE 1016 (1049)
Q Consensus 1004 ~~~yGkhIV~kiE 1016 (1049)
.++||+||+.+++
T Consensus 320 ~~~~G~~i~~~l~ 332 (333)
T 3bwt_A 320 NTPHGKRIIGMLH 332 (333)
T ss_dssp GSHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHC
T ss_conf 8997788999864
No 6
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=1.00 E-value=1 Score=347.40 Aligned_cols=280 Identities=21% Similarity=0.309 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 99999886985102645452131540137998999999998777999672144219999987516999999999999978
Q 001588 732 VFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGH 811 (1049)
Q Consensus 732 IfeEI~~~ileLatD~fGShVIQKLLe~gs~eqr~~Lie~Lkg~I~~Ls~d~yGSrVIQklLe~as~eqr~~Lv~EL~g~ 811 (1049)
+++++.+++.+|+.|++|+++||++|++++++++..|++++.+++.+|++|+||++|+|+++++++.+++..|++++.++
T Consensus 7 ~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~~~ 86 (333)
T 3bwt_A 7 VLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPH 86 (333)
T ss_dssp CGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 69999979999965847139999987629999999999999988999955853279999999629999999999998748
Q ss_pred HHHHHCCCCCCHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98986057776689999961994-68999999877658772049887547889873069888999999999999999711
Q 001588 812 IMRCVRDQNGNHVIQKCIECVPE-DAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQ 890 (1049)
Q Consensus 812 I~eLvkDqnGNhVIQKiLE~~p~-e~ie~Iis~L~g~iveLs~hkyGS~VIQkiLe~~~d~~~r~~LIeeI~~~l~~La~ 890 (1049)
+.+++.|++|++|+|++|++++. +.+..|++.+.+++..|+++++|++|+|++++.. +++.++.+++.+.+.+..|+.
T Consensus 87 ~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~-~~~~~~~i~~~l~~~~~~l~~ 165 (333)
T 3bwt_A 87 FVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRL-KPENFQFIFDAISDSCIDIAT 165 (333)
T ss_dssp HHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHS-CHHHHHHHHHHHHHSHHHHHT
T ss_pred HHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999855555289998898638199999999999998999941976268999999977-998899999999998999965
Q ss_pred CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHH----HHHHHHHHHCCCCCCHHHHHH
Q ss_conf 9650099999996089001999999999999998119048999999995099999----999999995188994459984
Q 001588 891 DQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAE----RQALVNEMLGSIEENEPLQVM 966 (1049)
Q Consensus 891 Dq~GNyVVQ~ILe~~~~keR~~IIe~Llg~IvsLS~~K~GS~VIEklL~~as~k~----Rk~II~ELlg~t~~~e~L~~L 966 (1049)
+++|+.|+|+++++++++++..|++.+.+++..|+++.||++||+++|+.++++. ++.|++.+. +++.+|
T Consensus 166 ~~~Gs~Vvq~~l~~~~~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~------~~~~~L 239 (333)
T 3bwt_A 166 HRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLK------PRAIEL 239 (333)
T ss_dssp STTHHHHHHHHHHHCCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHG------GGHHHH
T ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH------HHHHHH
T ss_conf 83617999999982999999999999999899980598289999999983872002036999999999------999999
Q ss_pred HCCCCHHHHHHHHHHCCCHHHHHHHHHHHH-----HHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 308964799999974199689999999999-----989988416884369999999997
Q 001588 967 MKDQFANYVVQKVLETCDDQQLELILNRIK-----VHLNALKKYTYGKHIVARVEKLVA 1020 (1049)
Q Consensus 967 a~Dq~GNyVVQklLe~~dd~qRe~ILseLk-----~~L~~L~~~~yGkhIV~kiEkli~ 1020 (1049)
++++||++||+++|+..+ .++.++.++. +++..|..++||.+|++++.....
T Consensus 240 s~~k~gs~Vvek~l~~~~--~~~~ii~ell~~~~~~~l~~L~~d~~gnyViq~~l~~~~ 296 (333)
T 3bwt_A 240 SIHKFGSNVIEKILKTAI--VSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISH 296 (333)
T ss_dssp HTSTTHHHHHHHHHTSHH--HHHHHHHHHHHTTHHHHHHHHHTSTTHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHCCCC--HHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 706277999999980620--169999999824685679998718807899999999666
No 7
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=1.00 E-value=1 Score=340.62 Aligned_cols=301 Identities=23% Similarity=0.374 Sum_probs=269.4
Q ss_pred CHHHHHHHHHH---HHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 82446779986---202734431198779999998308773799999630299999999999998869851026454521
Q 001588 676 DESFASSLLDE---FKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYV 752 (1049)
Q Consensus 676 ~d~~~s~LLeE---f~~neer~~~LseIkGkIveLa~Dq~GSRvIQklLe~aS~Eer~~IfeEI~~~ileLatD~fGShV 752 (1049)
.|..++.++|. ..+.+++...+.++.++++++++|++|++++|++|++++.+++..|++++.+++.+|+.|++|++|
T Consensus 33 ~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rv 112 (351)
T 3gvo_A 33 QDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRV 112 (351)
T ss_dssp TSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHH
T ss_pred CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 69863699999971398999999999998858989718166299999996099999999999987669988607886899
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 31540137998999999998777999672144219999987516999999999999978989860577766899999619
Q 001588 753 IQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECV 832 (1049)
Q Consensus 753 IQKLLe~gs~eqr~~Lie~Lkg~I~~Ls~d~yGSrVIQklLe~as~eqr~~Lv~EL~g~I~eLvkDqnGNhVIQKiLE~~ 832 (1049)
||++++.++.+++..|++++.+++..|+.|.+|+||||+++++++++++..|++.+.+++..++.+++|++|+|++|+.+
T Consensus 113 vQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~ 192 (351)
T 3gvo_A 113 IQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHC 192 (351)
T ss_dssp HHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHS
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_conf 99999967899999999985316999987101327999999768999999999999888999980757489999999978
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
Q ss_conf 94689999998776587720498875478898730698889999999999999997119650099999996089001999
Q 001588 833 PEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSA 912 (1049)
Q Consensus 833 p~e~ie~Iis~L~g~iveLs~hkyGS~VIQkiLe~~~d~~~r~~LIeeI~~~l~~La~Dq~GNyVVQ~ILe~~~~keR~~ 912 (1049)
+++.+..|++.+.+++..|+++++|++|+|++|+.+ ++..+..|++.+.+++..|+.++||+.||+++++++++++|..
T Consensus 193 ~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~-~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ 271 (351)
T 3gvo_A 193 TAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHG-RPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERAL 271 (351)
T ss_dssp CHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHS-CHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHH
T ss_conf 999999999998654996189943879999999967-5344999999999889998549388999999997599999999
Q ss_pred HHHHHHH-------HHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 9999999-------9999811904899999999509999999999999518899445998430896479999997419
Q 001588 913 IIKKLTG-------QIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETC 983 (1049)
Q Consensus 913 IIe~Llg-------~IvsLS~~K~GS~VIEklL~~as~k~Rk~II~ELlg~t~~~e~L~~La~Dq~GNyVVQklLe~~ 983 (1049)
|++.+.. .+..|++++||.+||+++|..+++++|+.|++.+. +++..|.+++||.+|+.++-...
T Consensus 272 ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~~r~~i~~~i~------~~~~~L~~~~~g~~i~~kl~~~~ 343 (351)
T 3gvo_A 272 LIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIR------PHITTLRKYTYGKHILAKLEKYY 343 (351)
T ss_dssp HHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHHHHHHHHHHHG------GGHHHHTTSTTTHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH------HHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9999861267887279880699626799999998589999999999999------99999836984699999999987
No 8
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=1.00 E-value=1 Score=339.77 Aligned_cols=315 Identities=20% Similarity=0.313 Sum_probs=239.7
Q ss_pred CCCHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 73799999630299--9999999999988698510264545213154013799899999999877799967214421999
Q 001588 712 YGSRFIQQKLETAT--TEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVI 789 (1049)
Q Consensus 712 ~GSRvIQklLe~aS--~Eer~~IfeEI~~~ileLatD~fGShVIQKLLe~gs~eqr~~Lie~Lkg~I~~Ls~d~yGSrVI 789 (1049)
+-|++++......+ ..++...++++.+++.+||.|++|+++||++|++++++++..|++++.+++.+|+.|+||+|||
T Consensus 3 ~~s~lle~~~~~~~~~~~~~~~~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vv 82 (369)
T 3k49_A 3 HRSPLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVI 82 (369)
T ss_dssp --CHHHHHHHTTCC------CCCGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHH
T ss_pred CCCHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 75254899867998655444603999998999997287230999998662999999999999999899986485115589
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 99875169999999999999789898605777668999996199468999999877658772049887547889873069
Q 001588 790 QKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCH 869 (1049)
Q Consensus 790 QklLe~as~eqr~~Lv~EL~g~I~eLvkDqnGNhVIQKiLE~~p~e~ie~Iis~L~g~iveLs~hkyGS~VIQkiLe~~~ 869 (1049)
|++|++++.+++..|++++.+++..++.|++|++|+|++++++.++....|++.+.+++..|.++++|++|+|++++.+.
T Consensus 83 Qkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~ 162 (369)
T 3k49_A 83 QKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIP 162 (369)
T ss_dssp HHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSC
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
T ss_conf 99997399999999999986208988517554899999997589999999999999999999517445549999997199
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHH-----
Q ss_conf 888999999999999999711965009999999608900199999999999999811904899999999509999-----
Q 001588 870 DEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPA----- 944 (1049)
Q Consensus 870 d~~~r~~LIeeI~~~l~~La~Dq~GNyVVQ~ILe~~~~keR~~IIe~Llg~IvsLS~~K~GS~VIEklL~~as~k----- 944 (1049)
++.+..+++.+.+++..|+.+++|+.|+|++++++.++++..|++.|.+++..|+++.||++|++++|+.++++
T Consensus 163 -~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~ 241 (369)
T 3k49_A 163 -IEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMV 241 (369)
T ss_dssp -GGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf -9999999999999999996787668299999986899999999999999999996597299999999953890322357
Q ss_pred -HHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH-------------HHHHHHHCCCCHH
Q ss_conf -99999999951889944599843089647999999741996899999999999-------------8998841688436
Q 001588 945 -ERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKV-------------HLNALKKYTYGKH 1010 (1049)
Q Consensus 945 -~Rk~II~ELlg~t~~~e~L~~La~Dq~GNyVVQklLe~~dd~qRe~ILseLk~-------------~L~~L~~~~yGkh 1010 (1049)
.++.|++.+. +++.+|++|+||++||+++|+.+++..|+.|++++.. .+..|..++||.+
T Consensus 242 ~~~~~i~~~l~------~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNy 315 (369)
T 3k49_A 242 DIKQEIIETVA------NNVVEYSKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANY 315 (369)
T ss_dssp HHHHHHHHHHH------TTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHH
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHH
T ss_conf 67999999999------999999861575699999998399999999999985556432112356527999984730589
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 999999999707873788999998
Q 001588 1011 IVARVEKLVAAGGIYLPFLYNFFS 1034 (1049)
Q Consensus 1011 IV~kiEkli~~g~~R~~l~~~l~~ 1034 (1049)
|++++...... ..|..+...+..
T Consensus 316 Viq~~l~~~~~-~~~~~l~~~i~p 338 (369)
T 3k49_A 316 VIQKLVNVSEG-EGKKLIVIAIRA 338 (369)
T ss_dssp HHHHHHHHCCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCH-HHHHHHHHHHHH
T ss_conf 99999996788-899999999999
No 9
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=310.97 Aligned_cols=282 Identities=18% Similarity=0.311 Sum_probs=227.9
Q ss_pred HHHH--HHHHHHHHCCCCCCCHHHHHCCCCCHHH-HHHHHHHHH---HHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 9999--8869851026454521315401379989-999999987---779996721442199999875169999999999
Q 001588 733 FQEI--MPQALSLMTDVFGNYVIQKFFEHGTASQ-VRELADQLT---GHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVK 806 (1049)
Q Consensus 733 feEI--~~~ileLatD~fGShVIQKLLe~gs~eq-r~~Lie~Lk---g~I~~Ls~d~yGSrVIQklLe~as~eqr~~Lv~ 806 (1049)
+.++ .+++.++|.|++|+++||+.|+.+++++ +..+++++. +++.+|++|+||++||||++++++.+++..++.
T Consensus 13 L~~~~~~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~~li~ 92 (382)
T 3v71_A 13 LEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQRELLR 92 (382)
T ss_dssp HHHHHHTTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHCCCEEHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99884088770030487102999987043886899999999998627789999628288799999998599999999999
Q ss_pred H-HHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH--
Q ss_conf 9-997898986057776689999961994689999998776-587720498875478898730698889999999999--
Q 001588 807 E-LDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYD-QVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEIL-- 882 (1049)
Q Consensus 807 E-L~g~I~eLvkDqnGNhVIQKiLE~~p~e~ie~Iis~L~g-~iveLs~hkyGS~VIQkiLe~~~d~~~r~~LIeeI~-- 882 (1049)
+ +.+++..++.|++|++|+||+|++++.+....|++.+.+ ++..++.+++|++|||+||+.+.. +.+..|++++.
T Consensus 93 ~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~-~~~~~Ii~~~~~~ 171 (382)
T 3v71_A 93 QMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPV-DMWTFFVHFLSSG 171 (382)
T ss_dssp HHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCT-TTSHHHHHHHHST
T ss_pred HHHCCHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHCCH-HHHHHHHHHHHCC
T ss_conf 973113988773750569999999978999999999985412669996185615199999997899-9999999999545
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHCCHHH-------H----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCH--HHHHHH
Q ss_conf 999997119650099999996089001-------9----999999999999981190489999999950999--999999
Q 001588 883 QSVCMLAQDQYGNYVVQHVLEHGKPHE-------R----SAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTP--AERQAL 949 (1049)
Q Consensus 883 ~~l~~La~Dq~GNyVVQ~ILe~~~~ke-------R----~~IIe~Llg~IvsLS~~K~GS~VIEklL~~as~--k~Rk~I 949 (1049)
+++..++.|+||++|||++|+++.+++ | ..|++.+.+++..|++++||++||++||+.+++ ..|..|
T Consensus 172 ~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~e~~r~~i 251 (382)
T 3v71_A 172 DSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTI 251 (382)
T ss_dssp THHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTHHHHHHHH
T ss_pred CCHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
T ss_conf 31176826951159999999968876421145578999999999999989998647520199999984499747889999
Q ss_pred HHH-HHCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH-----------HHHHHHHCCCCHHHHHHHHH
Q ss_conf 999-951889944599843089647999999741996899999999999-----------89988416884369999999
Q 001588 950 VNE-MLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKV-----------HLNALKKYTYGKHIVARVEK 1017 (1049)
Q Consensus 950 I~E-Llg~t~~~e~L~~La~Dq~GNyVVQklLe~~dd~qRe~ILseLk~-----------~L~~L~~~~yGkhIV~kiEk 1017 (1049)
+.+ +. +++..|++++||++||+++|+.+++..|+.|+++|.. .+..|..+.||.+|++++..
T Consensus 252 i~~~l~------~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L~ 325 (382)
T 3v71_A 252 IDKCLL------RNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMIS 325 (382)
T ss_dssp HHHTTT------TCHHHHTTSTTHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHHHH
T ss_pred HHHHHH------HHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHH
T ss_conf 999999------98999965706759999999869999999999999821345555652589998779971399999999
Q ss_pred HHHC
Q ss_conf 9970
Q 001588 1018 LVAA 1021 (1049)
Q Consensus 1018 li~~ 1021 (1049)
....
T Consensus 326 ~~~~ 329 (382)
T 3v71_A 326 ICTA 329 (382)
T ss_dssp HHHH
T ss_pred HCCC
T ss_conf 7434
No 10
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=1.00 E-value=1 Score=300.69 Aligned_cols=278 Identities=19% Similarity=0.283 Sum_probs=132.8
Q ss_pred HHHHHHHHCCCCCCCHHHHHCCCC-CHHHHHHHHHHHHHH---HHHHHHCCCCCHHHHHHHHHCCH-------HHHHHHH
Q ss_conf 886985102645452131540137-998999999998777---99967214421999998751699-------9999999
Q 001588 737 MPQALSLMTDVFGNYVIQKFFEHG-TASQVRELADQLTGH---VLTLSLQMYGCRVIQKAIEVVEL-------DQQTQMV 805 (1049)
Q Consensus 737 ~~~ileLatD~fGShVIQKLLe~g-s~eqr~~Lie~Lkg~---I~~Ls~d~yGSrVIQklLe~as~-------eqr~~Lv 805 (1049)
.+++.+++.|.+|+++||++|+++ +++++..|++++.++ +.+|++|+||.+||||+|++++. +++..|+
T Consensus 28 ~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~~q~~~i~ 107 (412)
T 3k62_A 28 SGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLK 107 (412)
T ss_dssp HTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHHHHHHHHH
T ss_pred CCCCHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 87719996497568999998650899899999999997225679999837298899999998489112324399999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHH--HHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH-
Q ss_conf 999978989860577766899999619946899999987--76587720498875478898730698889999999999-
Q 001588 806 KELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTF--YDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEIL- 882 (1049)
Q Consensus 806 ~EL~g~I~eLvkDqnGNhVIQKiLE~~p~e~ie~Iis~L--~g~iveLs~hkyGS~VIQkiLe~~~d~~~r~~LIeeI~- 882 (1049)
+.+.+++.+++.|++|++|+|++|++++.+.+..|++.+ .+++..|+++++|++|||+||+.+ .++.+..|++.+.
T Consensus 108 ~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~~~~~i~~L~~D~~GNhVIQK~Le~~-~~~~~~~I~~~~~~ 186 (412)
T 3k62_A 108 NFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVI-PLKNWEFIVDFVAT 186 (412)
T ss_dssp HHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSCCSHHHHHHHHCTTTHHHHHHHHHHS-CHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_conf 99999999998174524999999995788899999999704601899971964369999999969-99999999998714
Q ss_pred -HHHHHHHCCCCCCHHHHHHHHHCCH------------HHHH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHH-
Q ss_conf -9999971196500999999960890------------0199----999999999999811904899999999509999-
Q 001588 883 -QSVCMLAQDQYGNYVVQHVLEHGKP------------HERS----AIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPA- 944 (1049)
Q Consensus 883 -~~l~~La~Dq~GNyVVQ~ILe~~~~------------keR~----~IIe~Llg~IvsLS~~K~GS~VIEklL~~as~k- 944 (1049)
+++..|+.++||+.|||++++++.+ ++|. .+++.+..+...|+++.||.+||+.+|+++.+.
T Consensus 187 ~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I~~~~~~L~~dq~GNyViQ~iL~~g~~~~ 266 (412)
T 3k62_A 187 PEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLAV 266 (412)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHSTTTHHHHHHHHHCGGGHH
T ss_pred CHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHH
T ss_conf 13699985596359999999996674112200100038899999999999999999998648420299999996299055
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH-----------HHHHHHHCCCCHHHHH
Q ss_conf 99999999951889944599843089647999999741996899999999999-----------8998841688436999
Q 001588 945 ERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKV-----------HLNALKKYTYGKHIVA 1013 (1049)
Q Consensus 945 ~Rk~II~ELlg~t~~~e~L~~La~Dq~GNyVVQklLe~~dd~qRe~ILseLk~-----------~L~~L~~~~yGkhIV~ 1013 (1049)
.|..|+...+ .+++..|++++||+.||+|+|+.++++.|+.|+++|.. .+..|..+.||.+|++
T Consensus 267 ~r~~ii~~~l-----~~~~~~LS~~KfgSnVVek~L~~~~~~~r~~ii~ei~~~~~~~~~~~~~~l~~L~~DqyGNYViQ 341 (412)
T 3k62_A 267 YRECIIEKCL-----MRNLLSLSQEKFASHVVEKAFLHAPLELLAEMMDEIFDGYIPHPDTGKDALDIMMFHQFGNYVVQ 341 (412)
T ss_dssp HHHHHHHHHT-----TTCHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHHSSCCCTTTCCCHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHH
T ss_conf 7999999999-----98899996040768999999985999999999999985035776545169999866993689999
Q ss_pred HHHHHHH
Q ss_conf 9999997
Q 001588 1014 RVEKLVA 1020 (1049)
Q Consensus 1014 kiEkli~ 1020 (1049)
++....+
T Consensus 342 ~~L~~~~ 348 (412)
T 3k62_A 342 CMLTICC 348 (412)
T ss_dssp HHHHHHH
T ss_pred HHHHHCC
T ss_conf 9999754
Done!