Query 001589
Match_columns 1048
No_of_seqs 250 out of 497
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 16:36:33 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001589.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_887-890//hhsearch_pdb/001589hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_A Adaptor protein complex 1.0 1 1 45.6 21.8 277 239-572 82-382 (621)
2 1w63_A Adapter-related protein 1.0 1 1 41.7 27.3 273 234-572 74-363 (618)
3 2vgl_B AP-2 complex subunit be 1.0 1 1 40.7 20.6 260 325-631 123-401 (591)
4 4b8j_A Importin subunit alpha- 1.0 1 1 35.6 17.7 103 324-428 203-315 (528)
5 3grl_A General vesicular trans 1.0 1 1 34.2 15.9 168 220-401 28-207 (651)
6 1xqr_A HSPBP1 protein; armadil 1.0 1 1 33.2 9.4 46 212-258 9-69 (296)
7 2db0_A 253AA long hypothetical 1.0 1 1 33.0 9.1 42 321-362 30-71 (253)
8 1w63_A Adapter-related protein 1.0 1 1 31.9 15.1 99 325-427 109-207 (618)
9 1b3u_A Protein (protein phosph 1.0 1 1 31.8 20.1 106 322-429 163-272 (588)
10 4hxt_A De novo protein OR329; 1.0 1 1 31.3 15.7 103 324-428 45-157 (252)
No 1
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=1.00 E-value=1 Score=45.62 Aligned_cols=277 Identities=13% Similarity=0.093 Sum_probs=160.1
Q ss_pred HHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 71081145898999998651257714798999999999840999998465322387888888766431013789999999
Q 001589 239 VGDNPMANLRSLDALLGMVSSKVGKRHALTGFEALKELFVSSLLPDRKLKTLVQRPLDNLPETKDGYSLLLFWYYEEFLK 318 (1048)
Q Consensus 239 IQesPvhnl~~L~~Ll~m~~~K~srr~al~Al~aLkeLF~~~LLPdRKLr~f~qqPl~~l~~~k~~~~~L~lWyFEd~LK 318 (1048)
+-.++-+.++.+--|.-+.--+.....+++++.+++.=+. + |+--.|...- +.|....- .
T Consensus 82 l~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~-~--~n~~ir~lAL-------------r~L~~i~~----~ 141 (621)
T 2vgl_A 82 LLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLA-S--RNPTFMGLAL-------------HCIANVGS----R 141 (621)
T ss_dssp GGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHH-S--CCHHHHHHHH-------------HHHHHHCC----H
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-C--CCHHHHHHHH-------------HHHHCCCC----H
T ss_conf 9648978999999999999836882899999999987658-9--9898999999-------------99665597----9
Q ss_pred HHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999971--390389999999999999604914699--99998530579988631507999999998309984
Q 001589 319 QRYERFVLALEESS--RDVLPVLKTKALKIVYALLTSKPEQEH--RLLSALVNKLGDPQNKGASNADFHLSNLLADHPNM 394 (1048)
Q Consensus 319 ~~Y~~Fvq~Le~l~--~D~l~~~r~kAl~~i~~LL~~kPEqE~--~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~M 394 (1048)
......+..+..++ .|+-+++|++|+-+++.+....|+.-. .++..|..-|.|++..|.+.|..+|..+....|..
T Consensus 142 e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~ 221 (621)
T 2vgl_A 142 EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE 221 (621)
T ss_dssp HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHH
T ss_conf 99999999999998179997799999999999999749100571239999999847998029999999999999969698
Q ss_pred ----HHHHHHHHHHHHCCCCC-----------CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf ----58899999986508899-----------964278999994422104689935899999999999999998212679
Q 001589 395 ----KAVVINEVDSFLFRPHL-----------GLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLITEAGAG 459 (1048)
Q Consensus 395 ----K~VVv~EVe~lLfRpni-----------~~rAqYYAv~fLnQi~Ls~k~d~~~vA~~LI~iYF~lFk~lvk~~~~~ 459 (1048)
-..+++-+.+++..+.. ++-.|-+.+.+|..+. +.+ ++++...++++...++..+...+.
T Consensus 222 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~--~~~-d~~~~~~l~~~L~~il~~~~~~~k-- 296 (621)
T 2vgl_A 222 FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYP--PPE-DPAVRGRLTECLETILNKAQEPPK-- 296 (621)
T ss_dssp HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSS--SCS-SHHHHHHHHHHHHHHHHHHHSCCS--
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHC--CCC-CHHHHHHHHHHHHHHHHHHCCCCC--
T ss_conf 998889999999999867899862001158999639999999998728--888-889999999999999986134764--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH--HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 8544354468887676532112358999842311248--99999667742267898525668999777899985135657
Q 001589 460 DKMDKNSKTGNKHISTFSKKSQLKISPEPHIELDSRI--LSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNFN 537 (1048)
Q Consensus 460 ~k~~Kk~K~~~K~~~~k~kK~~~~~~~e~~~e~~sKL--LsALLtGVNRA~Py~~~d~~dd~~e~~ldtLFrIvH~~nfn 537 (1048)
.+ -+.++= .+.++..++=.+.+ ... ..++..-+..|-+++.+.+-|
T Consensus 297 -----------------s~------------~l~~~n~~~aVl~ea~~~i~~l-~~~--~~~~~~~~~~L~~~L~~~~~n 344 (621)
T 2vgl_A 297 -----------------SK------------KVQHSNAKNAVLFEAISLIIHH-DSE--PNLLVRACNQLGQFLQHRETN 344 (621)
T ss_dssp -----------------CS------------SHHHHHHHHHHHHHHHHHHHHH-CCC--HHHHHHHHHHHHHHSSCSCHH
T ss_pred -----------------CC------------CCCCCCHHHHHHHHHHHHHHHC-CCC--HHHHHHHHHHHHHHHCCCCCC
T ss_conf -----------------34------------5343423888999999999964-884--999999999999985489932
Q ss_pred HHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHC-CCC
Q ss_conf 79999999999983088--881579999995201-853
Q 001589 538 VAVQALMLLDKISSKNH--IVSDRFYRALYSKLL-LPA 572 (1048)
Q Consensus 538 tsIQAL~LLfQI~~~~~--~~sDRFYraLY~kLL-dp~ 572 (1048)
+...||..|.+|...+. ..-.++...+...|- |+.
T Consensus 345 iry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d 382 (621)
T 2vgl_A 345 LRYLALESMCTLASSEFSHEAVKTHIETVINALKTERD 382 (621)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 59999999999984368579999999999999656998
No 2
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=1.00 E-value=1 Score=41.69 Aligned_cols=273 Identities=13% Similarity=0.093 Sum_probs=144.6
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99999710811458989999986512577147989999999998409999984653223878888887664310137899
Q 001589 234 AFSVIVGDNPMANLRSLDALLGMVSSKVGKRHALTGFEALKELFVSSLLPDRKLKTLVQRPLDNLPETKDGYSLLLFWYY 313 (1048)
Q Consensus 234 AltllIQesPvhnl~~L~~Ll~m~~~K~srr~al~Al~aLkeLF~~~LLPdRKLr~f~qqPl~~l~~~k~~~~~L~lWyF 313 (1048)
..+-+++ ++-+.++.+--|.-+.--+.....+++++.+|..-+. + |+--.|. +.++..
T Consensus 74 ~vik~~~-s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~-~--~n~~vr~------------------lAL~~L 131 (618)
T 1w63_A 74 ECLKLIA-SQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLN-H--STQFVQG------------------LALCTL 131 (618)
T ss_dssp HHHHHHH-SSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHS-C--SSSHHHH------------------HHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-C--CCHHHHH------------------HHHHHH
T ss_conf 9999981-8866888879999999817891899999999987668-9--8784899------------------999998
Q ss_pred HHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 999-9999999999999971390389999999999999604914699999985305799886315079999999983099
Q 001589 314 EEF-LKQRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHP 392 (1048)
Q Consensus 314 Ed~-LK~~Y~~Fvq~Le~l~~D~l~~~r~kAl~~i~~LL~~kPEqE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP 392 (1048)
-.- -.......+..+..++.|+-+++|.+|+.+++.|....|+.-..++..+..-|.|++..|...|...|.++....|
T Consensus 132 ~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~ 211 (618)
T 1w63_A 132 GCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSP 211 (618)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHH
T ss_pred HHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCH
T ss_conf 86298999999999999997599879999999999999987958799999999998279977399999999999998395
Q ss_pred CCHHH---HHHHHHHHHCC-------------CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 84588---99999986508-------------899964278999994422104689935899999999999999998212
Q 001589 393 NMKAV---VINEVDSFLFR-------------PHLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLITEA 456 (1048)
Q Consensus 393 ~MK~V---Vv~EVe~lLfR-------------pni~~rAqYYAv~fLnQi~Ls~k~d~~~vA~~LI~iYF~lFk~lvk~~ 456 (1048)
..... ++..+..+|.+ ...++-.|-+.+.+|..+... ++.....++++...+ +...
T Consensus 212 ~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~----~~~~~~~~~~~L~~l----~~~~ 283 (618)
T 1w63_A 212 DMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN----DDDSSEAMNDILAQV----ATNT 283 (618)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT----CHHHHHTTHHHHHHH----HHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHH----HHCC
T ss_conf 88999999899999999998727999543226889870999999999873899----979999999999999----7356
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 67985443544688876765321123589998423112489999966774226789852566899977789998513565
Q 001589 457 GAGDKMDKNSKTGNKHISTFSKKSQLKISPEPHIELDSRILSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNF 536 (1048)
Q Consensus 457 ~~~~k~~Kk~K~~~K~~~~k~kK~~~~~~~e~~~e~~sKLLsALLtGVNRA~Py~~~d~~dd~~e~~ldtLFrIvH~~nf 536 (1048)
.. . +. ...+=++.|+-+- + .+..+ ..+...-++.|.+++.+.+-
T Consensus 284 ~~----------------~--~~-----------~~~aV~~ea~~~i----~-~l~~~--~~l~~~a~~~L~~~L~~~d~ 327 (618)
T 1w63_A 284 ET----------------S--KN-----------VGNAILYETVLTI----M-DIKSE--SGLRVLAINILGRFLLNNDK 327 (618)
T ss_dssp CC----------------S--ST-----------HHHHHHHHHHHHH----H-HSCCC--HHHHHHHHHHHHHHHTCSST
T ss_pred CC----------------C--CC-----------HHHHHHHHHHHHH----H-HCCCC--HHHHHHHHHHHHHHHHCCCC
T ss_conf 45----------------5--54-----------4789999999999----9-54887--79999999999999747997
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 779999999999983088881579999995201853
Q 001589 537 NVAVQALMLLDKISSKNHIVSDRFYRALYSKLLLPA 572 (1048)
Q Consensus 537 ntsIQAL~LLfQI~~~~~~~sDRFYraLY~kLLdp~ 572 (1048)
|+...||..|-.|...+...-.+++..+...|-|+.
T Consensus 328 ~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d 363 (618)
T 1w63_A 328 NIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLD 363 (618)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSC
T ss_pred CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC
T ss_conf 437999999999986088999999999998715999
No 3
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=40.71 Aligned_cols=260 Identities=15% Similarity=0.178 Sum_probs=133.7
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC--HHHHHH
Q ss_conf 9999997139038999999999999960491469--999998530579988631507999999998309984--588999
Q 001589 325 VLALEESSRDVLPVLKTKALKIVYALLTSKPEQE--HRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNM--KAVVIN 400 (1048)
Q Consensus 325 vq~Le~l~~D~l~~~r~kAl~~i~~LL~~kPEqE--~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~M--K~VVv~ 400 (1048)
+..|..++.|+-+++|.+|+.+++.+...-|+.- ..++..|..-|.|++..|...|...|..+....|.. ..++..
T Consensus 123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~ 202 (591)
T 2vgl_B 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQ 202 (591)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCHH
T ss_conf 99999981799858999999999999851924144635899999996799843999999999999763787540442699
Q ss_pred HHHHHHCC-CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99986508-89996427899999442210468993589999999999999999821267985443544688876765321
Q 001589 401 EVDSFLFR-PHLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLITEAGAGDKMDKNSKTGNKHISTFSKK 479 (1048)
Q Consensus 401 EVe~lLfR-pni~~rAqYYAv~fLnQi~Ls~k~d~~~vA~~LI~iYF~lFk~lvk~~~~~~k~~Kk~K~~~K~~~~k~kK 479 (1048)
.+..++-. ...+.-+|-+.+..|..+. +.+ +..+..++...+.+ +.
T Consensus 203 ~~~~Ll~~l~~~~~~~q~~il~~l~~l~--~~~--~~~~~~~l~~l~~~----l~------------------------- 249 (591)
T 2vgl_B 203 NINKLLTALNECTEWGQIFILDCLSNYN--PKD--DREAQSICERVTPR----LS------------------------- 249 (591)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHTSC--CCS--HHHHHHHHHHHTTC----SC-------------------------
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHC--CCC--HHHHHHHHHHHHHH----HC-------------------------
T ss_conf 9999987488788257899999999867--998--59999999999998----75-------------------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 12358999842311248999996677422678--9852566899977789998513565779999999999983088881
Q 001589 480 SQLKISPEPHIELDSRILSALLMGVNRAFPYV--SSNEADDIIEVQTPMLFKLVHSKNFNVAVQALMLLDKISSKNHIVS 557 (1048)
Q Consensus 480 ~~~~~~~e~~~e~~sKLLsALLtGVNRA~Py~--~~d~~dd~~e~~ldtLFrIvH~~nfntsIQAL~LLfQI~~~~~~~s 557 (1048)
..+.-++-.....+....+++ +.+....++......|..+.. .+-|+...||..|-.|...+...-
T Consensus 250 -----------~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~ 317 (591)
T 2vgl_B 250 -----------HANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEIL 317 (591)
T ss_dssp -----------SSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTT
T ss_pred -----------CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHCHHHH
T ss_conf -----------89849999999999997402478879999999999999999966-992089999999999998696989
Q ss_pred HHHHHHHHHHHCCC------------CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 57999999520185------------312664188999999999831850789999999999998408911389999999
Q 001589 558 DRFYRALYSKLLLP------------AAMNSSKAKMFIGLLHRAMKNDVNLKRVAAFSKRLLQVVLQQPPQYACGCLFLL 625 (1048)
Q Consensus 558 DRFYraLY~kLLdp------------~l~~sSk~alfLnLL~ksLK~D~~~~RV~AFvKRLLQvsl~~pP~facg~L~Li 625 (1048)
..++..++..+-|| .+.+.+.....+.-|...++. .+..-...-+..|.++|...+ +.+..++-.+
T Consensus 318 ~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~-~d~~~r~~~v~aI~~la~~~~-~~~~~~v~~L 395 (591)
T 2vgl_B 318 KQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATE-VDVDFVRKAVRAIGRCAIKVE-QSAERCVSTL 395 (591)
T ss_dssp TTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHTTCH-HHHHHHHHHH
T ss_pred HHHHHHHEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHCH-HHHHHHHHHH
T ss_conf 99887550036993999999999999877862399999999999865-799999999999999998574-6799999999
Q ss_pred HHHHHH
Q ss_conf 999984
Q 001589 626 SEVLKA 631 (1048)
Q Consensus 626 seLLk~ 631 (1048)
.+++..
T Consensus 396 l~ll~~ 401 (591)
T 2vgl_B 396 LDLIQT 401 (591)
T ss_dssp HHHHHT
T ss_pred HHHHCC
T ss_conf 999835
No 4
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=1.00 E-value=1 Score=35.58 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=52.3
Q ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 999999971-3903899999999999996049146----99999985305799886315079999999983099845889
Q 001589 324 FVLALEESS-RDVLPVLKTKALKIVYALLTSKPEQ----EHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVV 398 (1048)
Q Consensus 324 Fvq~Le~l~-~D~l~~~r~kAl~~i~~LL~~kPEq----E~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~VV 398 (1048)
.|..|..++ .++-+.++..++.++..|....|.. ...++..|+.-|.+++..|...|...|..|....+.....+
T Consensus 203 ~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 282 (528)
T 4b8j_A 203 ALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAV 282 (528)
T ss_dssp CHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 59999999734898899999999999997589998699999899999999779987899999999999873887999999
Q ss_pred -----HHHHHHHHCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf -----999998650889996427899999442210
Q 001589 399 -----INEVDSFLFRPHLGLRAKYHAVNFLSQIRL 428 (1048)
Q Consensus 399 -----v~EVe~lLfRpni~~rAqYYAv~fLnQi~L 428 (1048)
+..+..+|..+ +...+..|+..|..+..
T Consensus 283 ~~~g~v~~Lv~lL~~~--~~~v~~~a~~~L~nl~~ 315 (528)
T 4b8j_A 283 IEAGVCPRLVELLLHP--SPSVLIPALRTVGNIVT 315 (528)
T ss_dssp HHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTT
T ss_pred HHCCHHHHHHHHHCCC--CHHHHHHHHHHHHHHHC
T ss_conf 9748799999997188--75577999999999972
No 5
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=1.00 E-value=1 Score=34.19 Aligned_cols=168 Identities=15% Similarity=0.160 Sum_probs=115.8
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 999842317779999999971081145----898999998651257714798-999999999840999998465322387
Q 001589 220 AATQRSGTAADKVSAFSVIVGDNPMAN----LRSLDALLGMVSSKVGKRHAL-TGFEALKELFVSSLLPDRKLKTLVQRP 294 (1048)
Q Consensus 220 ~ti~~sGTlsDKIaAltllIQesPvhn----l~~L~~Ll~m~~~K~srr~al-~Al~aLkeLF~~~LLPdRKLr~f~qqP 294 (1048)
..+.++.-+.||-+|+.-|--=+..+. -..|..|++...+-..-.+.+ .++++|.-+|..+--++ . + +
T Consensus 28 ~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~-~--~---~- 100 (651)
T 3grl_A 28 DRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEE-V--E---E- 100 (651)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC-C--C---C-
T ss_conf 8874056425799999999998898678751401999999982456539999999999999948897642-1--2---2-
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCH--HHHHH-----HHHHHH
Q ss_conf 88888876643101378999999999999999999971390389999999999999604914--69999-----998530
Q 001589 295 LDNLPETKDGYSLLLFWYYEEFLKQRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPE--QEHRL-----LSALVN 367 (1048)
Q Consensus 295 l~~l~~~k~~~~~L~lWyFEd~LK~~Y~~Fvq~Le~l~~D~l~~~r~kAl~~i~~LL~~kPE--qE~~L-----L~lLVN 367 (1048)
. .......+.+|+=|-.+++ ...|..|-.++.....++|.-+++++..|+.++|+ |+..| +..||.
T Consensus 101 --~---~~~~~~~~~~~~~d~f~~~--~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~ 173 (651)
T 3grl_A 101 --N---STRQSEDLGSQFTEIFIKQ--QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD 173 (651)
T ss_dssp ------------CHHHHHHHHHHHS--THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHG
T ss_pred --C---CCCCCHHHHHHHHHHHHCC--CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHH
T ss_conf --3---4321158899999999808--75489999985576188999999999999841919899999848454899999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 5799886315079999999983099845889999
Q 001589 368 KLGDPQNKGASNADFHLSNLLADHPNMKAVVINE 401 (1048)
Q Consensus 368 KLGDp~~KVASkAs~lL~~LL~~HP~MK~VVv~E 401 (1048)
-|.|+.-.|-..|.-+|..|...+++...+|+-|
T Consensus 174 lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFE 207 (651)
T 3grl_A 174 LLADSREVIRNDGVLLLQALTRSNGAIQKIVAFE 207 (651)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9808569999999999999826988999999982
No 6
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=1.00 E-value=1 Score=33.25 Aligned_cols=46 Identities=11% Similarity=0.158 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHCH-HHHHHHHHHHHHHHCH--------------HHHHHHHHHHHHHHH
Q ss_conf 9935899999984231-7779999999971081--------------145898999998651
Q 001589 212 QTGDIKMLAATQRSGT-AADKVSAFSVIVGDNP--------------MANLRSLDALLGMVS 258 (1048)
Q Consensus 212 ~~sd~kwl~ti~~sGT-lsDKIaAltllIQesP--------------vhnl~~L~~Ll~m~~ 258 (1048)
.+|-.-||..+|..+. -.++|-... .|..+| .+.+.+|+.|..++.
T Consensus 9 ~~~~~~~~~~~~~~~~d~~~~mk~~l-~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~ 69 (296)
T 1xqr_A 9 HSSGLVPRGSHMRGQRGEVEQMKSCL-RVLSQPMPPTAGEAEQAADQQEREGALELLADLCE 69 (296)
T ss_dssp -----------CCSCHHHHHHHHHHH-HHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHH-HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 22204799998747999999999999-99838873211003468999999999999999982
No 7
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=1.00 E-value=1 Score=32.97 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 999999999971390389999999999999604914699999
Q 001589 321 YERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLL 362 (1048)
Q Consensus 321 Y~~Fvq~Le~l~~D~l~~~r~kAl~~i~~LL~~kPEqE~~LL 362 (1048)
-.+||..|..++.|-+|.++..|++++..+....||--.-|+
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~ 71 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML 71 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 099999999883227999998589999999997188899999
No 8
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=1.00 E-value=1 Score=31.85 Aligned_cols=99 Identities=10% Similarity=0.091 Sum_probs=46.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999971390389999999999999604914699999985305799886315079999999983099845889999998
Q 001589 325 VLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVVINEVDS 404 (1048)
Q Consensus 325 vq~Le~l~~D~l~~~r~kAl~~i~~LL~~kPEqE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~VVv~EVe~ 404 (1048)
++.|.+-+.++-+.+|..|++++..+- .|+--..++..+..-|.|++.-|-.+|..+|..+....|..-..++..+..
T Consensus 109 in~l~kDL~~~n~~vr~lAL~~L~~i~--~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~ 186 (618)
T 1w63_A 109 TNCIKNDLNHSTQFVQGLALCTLGCMG--SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKN 186 (618)
T ss_dssp HHHHHHHHSCSSSHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 999987668987848999999988629--899999999999999759987999999999999998795879999999999
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 65088999642789999944221
Q 001589 405 FLFRPHLGLRAKYHAVNFLSQIR 427 (1048)
Q Consensus 405 lLfRpni~~rAqYYAv~fLnQi~ 427 (1048)
+|..+ +...++.|+..|.+|.
T Consensus 187 lL~D~--d~~V~~~Al~~L~~i~ 207 (618)
T 1w63_A 187 LLNEK--NHGVLHTSVVLLTEMC 207 (618)
T ss_dssp STTCC--CHHHHHHHHHHHHHHC
T ss_pred HHCCC--CHHHHHHHHHHHHHHH
T ss_conf 82799--7739999999999999
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=31.76 Aligned_cols=106 Identities=12% Similarity=0.111 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC--HHH
Q ss_conf 999999999713903899999999999996049146--9999998530579988631507999999998309984--588
Q 001589 322 ERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQ--EHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNM--KAV 397 (1048)
Q Consensus 322 ~~Fvq~Le~l~~D~l~~~r~kAl~~i~~LL~~kPEq--E~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~M--K~V 397 (1048)
..++..|..++.|+-+.+|..++.++..+....+.. ...++..+..-+.|++..|...|...|..+....|.- ...
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 242 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEAL 242 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 99999999984899788999999989999998167767999999999882499288999899999999985798888878
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999986508899964278999994422104
Q 001589 398 VINEVDSFLFRPHLGLRAKYHAVNFLSQIRLS 429 (1048)
Q Consensus 398 Vv~EVe~lLfRpni~~rAqYYAv~fLnQi~Ls 429 (1048)
|+.-+..++- ..+.+.++.++..|.++.-.
T Consensus 243 ~~~~l~~~~~--d~~~~vR~~a~~~l~~l~~~ 272 (588)
T 1b3u_A 243 VMPTLRQAAE--DKSWRVRYMVADKFTELQKA 272 (588)
T ss_dssp THHHHHHHHT--CSSHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHCC--CCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999806--99778999999999999998
No 10
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=1.00 E-value=1 Score=31.33 Aligned_cols=103 Identities=14% Similarity=0.087 Sum_probs=54.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHH-----HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 999999971390389999999999999604914699-----999985305799886315079999999983099845889
Q 001589 324 FVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEH-----RLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVV 398 (1048)
Q Consensus 324 Fvq~Le~l~~D~l~~~r~kAl~~i~~LL~~kPEqE~-----~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~VV 398 (1048)
.|..|..++.++-+.++..++.++..|....++... ..+..|+.-|.+++..+...|...|..|...+|..+..+
T Consensus 45 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 124 (252)
T 4hxt_A 45 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 124 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 89999999829988999999999999876985899999988987999998818978899999999999985998999999
Q ss_pred H-----HHHHHHHCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 9-----99998650889996427899999442210
Q 001589 399 I-----NEVDSFLFRPHLGLRAKYHAVNFLSQIRL 428 (1048)
Q Consensus 399 v-----~EVe~lLfRpni~~rAqYYAv~fLnQi~L 428 (1048)
+ ..+..+|..+ +...+..|+..|..+..
T Consensus 125 ~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 125 VDAGGVEVLVKLLTST--DSEVQKEAARALANIAS 157 (252)
T ss_dssp HHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHHC
T ss_conf 9888799999998699--88999999999999986
Done!