Query 001591
Match_columns 1048
No_of_seqs 809 out of 6797
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 15:47:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001591.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_891-895//hhsearch_pdb/001591hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 713.9 42.0 628 33-674 8-753 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 539.9 39.8 554 82-640 100-743 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 504.0 40.9 581 65-663 4-624 (680)
4 4eco_A Uncharacterized protein 1.0 1 1 492.5 25.8 446 33-502 26-547 (636)
5 3j0a_A TOLL-like receptor 5; m 1.0 1 1 481.1 36.8 517 65-642 14-564 (844)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 479.7 39.0 529 67-640 14-562 (606)
7 4ecn_A Leucine-rich repeat pro 1.0 1 1 477.2 33.1 521 30-638 262-864 (876)
8 3t6q_A CD180 antigen; protein- 1.0 1 1 473.2 34.7 528 86-663 16-562 (606)
9 1ziw_A TOLL-like receptor 3; i 1.0 1 1 471.2 45.2 521 82-642 49-626 (680)
10 3j0a_A TOLL-like receptor 5; m 1.0 1 1 465.9 39.7 521 86-663 8-562 (844)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=713.94 Aligned_cols=628 Identities=32% Similarity=0.514 Sum_probs=364.9
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCC---CCC---------
Q ss_conf 99988899999998419999887675799998302223619999999889389999038997323---684---------
Q 001591 33 SCDPSDLLALKEFAGNLTNGSIITSWSNESMCCQWDGVVCGHGSTGSNAGRVTMLILPRKGLKGI---IPR--------- 100 (1048)
Q Consensus 33 ~~~~~~~~aL~~~k~~~~~~~~l~sw~~~~~cc~w~gv~C~~~~~~~~~~~v~~l~l~~~~l~~~---~~~--------- 100 (1048)
.+.++|++||++||+++.++..+++|+.+++||.|+||+|+ .++|+.|+|++.++.|. +++
T Consensus 8 ~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~C~w~gv~C~-------~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCR-------DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCGGGSTTEEEE-------TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEC-------CCCEEEEECCCCCCCCCCCCCCHHHHCCCCCC
T ss_conf 68789999999999667896214687899987688413878-------99278987789986775576696573168022
Q ss_pred --------------CCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEEEECC
Q ss_conf --------------432886799585689978987981--35588876587246772538545333-3456610897057
Q 001591 101 --------------SLGHLNQLKLLDLSCNHLEGVVPV--ELSNLKQLEVLDLSHNMLSGPVSGML-AGLNLIQSLNVSS 163 (1048)
Q Consensus 101 --------------~l~~l~~L~~L~Ls~n~i~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~ 163 (1048)
.++.+++|++|+|++|.+++.+|. .++.+++|++|+|++|.+.+..+..+ ..+++|++|+|++
T Consensus 81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred CCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCC
T ss_conf 46786888678703324578899898989857870789678727889998989688267747977856388999898979
Q ss_pred CCCCCCCC-C---CCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 65677423-3---3456754299801752357532355411444426763474354446778899999889832677999
Q 001591 164 NSFNGSLF-E---LGEFSNLAVFNISNNSFTGKLNSRIWSASKEIQILDLSMNHFMGSLQGLDHSPSLKQLHVDNNLLGG 239 (1048)
Q Consensus 164 N~l~~~~~-~---l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~ 239 (1048)
|.+++... . +..+++|++|++++|.+.+..+. ..+++|++|++++|.+.+.++.+..+++|++|++++|.+.+
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~ 237 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG 237 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS
T ss_pred CCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC---CCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
T ss_conf 835885871556643589889898978803465784---54786898989288278877111269999989794885878
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899121289998599821566776013420389998599815996888862001584-4445012467733477783353
Q 001591 240 DLPDSLYSMSSLQHVSLSVNNFSGQLSEKISNLTSLRHLIIFGNQFSGKLPNVLGNL-TQLEFFVAHSNSFSGPLPLSLS 318 (1048)
Q Consensus 240 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~l~~n~l~~~~p~~l~ 318 (1048)
.+|..+..+++|++|++++|.+++.+|.. .+++|++|++++|++++.+|..+.+. ++|++|++++|.+++.+|..+.
T Consensus 238 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 315 (768)
T 3rgz_A 238 DFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315 (768)
T ss_dssp CHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG
T ss_pred CCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHH
T ss_conf 16577744888898989888665716724--3687898979178557725888884468688998968967784236775
Q ss_pred CCCCCCEEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCC-------------------------CCCCC--CCC
Q ss_conf 6789839990285223756756-6557766476235533558898-------------------------42358--886
Q 001591 319 LCSKLHVLDLRNNSLTGPIDLN-FSGLSSLCTLDLATNHFSGPLP-------------------------NSLSD--CHD 370 (1048)
Q Consensus 319 ~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~p-------------------------~~l~~--l~~ 370 (1048)
.+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++.+| ..+.. +++
T Consensus 316 ~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 395 (768)
T 3rgz_A 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395 (768)
T ss_dssp GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCC
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCC
T ss_conf 58776677897885257379788724888878848478437623098986322771998627874787676665332477
Q ss_pred CCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 55442135323224530002677675774158857777675100013666516752467567778844458876748982
Q 001591 371 LKILSLAKNELSGQVPESFGKLTSLLFLSLSNNSFNHLSGTLSVLQQCKNLTTLILTKNFVGEEIPENVGGFESLMVLAL 450 (1048)
Q Consensus 371 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 450 (1048)
|+.|++++|.+++.+|..+..+++|+.|++++|.+..... ..+..+++|+.|++++|.+.+.+|..+..+++|+.|++
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP--SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC--GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC--HHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEE
T ss_conf 6189897784654248777568987989895884668546--77744998898989788154718978828777329990
Q ss_pred CCCCCCCCCHHHHHCCCCCCEEECCCCEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC
Q ss_conf 48746578157653058996894867540258990101489987485027856445883045553200158899999877
Q 001591 451 GNCGLKGHIPVWLLRCKKLQVLDLSWNHFDGNIPPWIGQMENLFYLDFSNNTLTGEIPKSLTELKSLISSNCTSSNPTAS 530 (1048)
Q Consensus 451 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~ 530 (1048)
++|.+.+.+|..+..+++|++|++++|.+++.+|.+++.+++|++|++++|.+++.+|..+..+++|..++.........
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCC
T ss_conf 19951375887881699899897539951896876885689999898978943374887770889899898988846882
Q ss_pred CCCCC------------------EEECC----------------------------CCCCCCC----------CCCCCCC
Q ss_conf 78553------------------03014----------------------------5679967----------7888999
Q 001591 531 AGIPL------------------YVKHN----------------------------RSTNGLP----------YNQASSF 554 (1048)
Q Consensus 531 ~~~~~------------------~~~~~----------------------------~~~~~l~----------~~~~~~~ 554 (1048)
.+... +.... .....+. .......
T Consensus 554 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~ 633 (768)
T 3rgz_A 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633 (768)
T ss_dssp CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred CCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCC
T ss_conf 79578604212232013454211113444322223322210013556323200232110011331004627433403356
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 98333003862114993533778886897538630333895652556766764788835899950011536777046105
Q 001591 555 PPSVFLSNNRINGTIPPEIGQLKHLHVLDLSRNNITGTIPSSISEIRNLEVLDLSSNDLHGSIPGSFEKLTFLSKFSVAN 634 (1048)
Q Consensus 555 ~~~l~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~l~~ 634 (1048)
++.+++++|+++|.+|.+++.++.|+.|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|..+..+++|+.|++++
T Consensus 634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred CCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCC
T ss_conf 65797858801555877884141578784868803887896784777899898978802386886775788789787968
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5242369999844678886544898875799999997678
Q 001591 635 NHLQGTIPTGGQFYSFPNSSFEGNPGLCGEIDSPCDSMHA 674 (1048)
Q Consensus 635 N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~~~~~~~~~~ 674 (1048)
|+++|.||..++|.++...+|.|||++||.+.++|....+
T Consensus 714 N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~ 753 (768)
T 3rgz_A 714 NNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNA 753 (768)
T ss_dssp SEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC-
T ss_pred CCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCCCCCCCCC
T ss_conf 8155608996010248977756983210887767888766
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=539.91 Aligned_cols=554 Identities=34% Similarity=0.488 Sum_probs=298.0
Q ss_pred CCEEEEEECCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCCC---CC----
Q ss_conf 9389999038997323684--43288679958568997898798135-58887658724677253854533---33----
Q 001591 82 GRVTMLILPRKGLKGIIPR--SLGHLNQLKLLDLSCNHLEGVVPVEL-SNLKQLEVLDLSHNMLSGPVSGM---LA---- 151 (1048)
Q Consensus 82 ~~v~~l~l~~~~l~~~~~~--~l~~l~~L~~L~Ls~n~i~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~~~~---~~---- 151 (1048)
.+++.|+|+++.+.|.++. .++++++|++|+|++|.+++.+|..+ ..+++|++|+|++|.+++..+.. +.
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~ 179 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179 (768)
T ss_dssp TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred CCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCC
T ss_conf 88998989898578707896787278899989896882677479778563889998989798358858715566435898
Q ss_pred ------------------CCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCEEECCCCC
Q ss_conf ------------------45661089705765677423334567542998017523575323554114444267634743
Q 001591 152 ------------------GLNLIQSLNVSSNSFNGSLFELGEFSNLAVFNISNNSFTGKLNSRIWSASKEIQILDLSMNH 213 (1048)
Q Consensus 152 ------------------~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~ 213 (1048)
.+++|++|+|++|.+.+.+..++.+++|++|++++|.+++.++. .+..+++|+.|++++|.
T Consensus 180 L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~ 258 (768)
T 3rgz_A 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQ 258 (768)
T ss_dssp CCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCEEECCSSC
T ss_pred CCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH-HHHCCCCCCEEECCCCC
T ss_conf 89898978803465784547868989892882788771112699999897948858781657-77448888989898886
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 54446778899999889832677999899121289-99859982156677601342038999859981599688886200
Q 001591 214 FMGSLQGLDHSPSLKQLHVDNNLLGGDLPDSLYSM-SSLQHVSLSVNNFSGQLSEKISNLTSLRHLIIFGNQFSGKLPNV 292 (1048)
Q Consensus 214 l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 292 (1048)
+.+..+.. .+++|++|++++|.+.+.+|..+... ++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..
T Consensus 259 l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~ 337 (768)
T 3rgz_A 259 FVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337 (768)
T ss_dssp CEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH
T ss_pred CCCCCCCC-CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHH
T ss_conf 65716724-36878989791785577258888844686889989689677842367755877667789788525737978
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEECCCCCCCCCCCCCCC--CCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf -15844445012467733477783353678-9839990285223756756655--7766476235533558898423588
Q 001591 293 -LGNLTQLEFFVAHSNSFSGPLPLSLSLCS-KLHVLDLRNNSLTGPIDLNFSG--LSSLCTLDLATNHFSGPLPNSLSDC 368 (1048)
Q Consensus 293 -l~~l~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~p~~l~~l 368 (1048)
++++++|++|++++|.+++.+|..+..++ +|+.|++++|.+.+..+..+.. +++|+.|++++|.+++.+|..+..+
T Consensus 338 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l 417 (768)
T 3rgz_A 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417 (768)
T ss_dssp HHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC
T ss_pred HHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCC
T ss_conf 87248888788484784376230989863227719986278747876766653324776189897784654248777568
Q ss_pred CCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 86554421353232245300026776757741588577776751000136665167524675677788444588767489
Q 001591 369 HDLKILSLAKNELSGQVPESFGKLTSLLFLSLSNNSFNHLSGTLSVLQQCKNLTTLILTKNFVGEEIPENVGGFESLMVL 448 (1048)
Q Consensus 369 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 448 (1048)
++|+.|++++|.+++..|..+..+++|+.|++++|.+..... ..+..+++|++|++++|.+.+.+|..+..+++|+.|
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 495 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP--QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC--HHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEE
T ss_conf 987989895884668546777449988989897881547189--788287773299901995137588788169989989
Q ss_pred ECCCCCCCCCCHHHHHCCCCCCEEECCCCEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC-
Q ss_conf 8248746578157653058996894867540258990101489987485027856445883045553200158899999-
Q 001591 449 ALGNCGLKGHIPVWLLRCKKLQVLDLSWNHFDGNIPPWIGQMENLFYLDFSNNTLTGEIPKSLTELKSLISSNCTSSNP- 527 (1048)
Q Consensus 449 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~- 527 (1048)
++++|++.+.+|.+++.+++|++|++++|.+++.+|..++.+++|+.|++++|.++|.+|..+.....+...+......
T Consensus 496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~ 575 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred ECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCC
T ss_conf 75399518968768856899998989789433748877708898998989888468827957860421223201345421
Q ss_pred --------------------------------------------------CCC----CCCCCEEECCCCCCCCCC-CCCC
Q ss_conf --------------------------------------------------877----785530301456799677-8889
Q 001591 528 --------------------------------------------------TAS----AGIPLYVKHNRSTNGLPY-NQAS 552 (1048)
Q Consensus 528 --------------------------------------------------~~~----~~~~~~~~~~~~~~~l~~-~~~~ 552 (1048)
... .-..+.+.+|......|. ...-
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 655 (768)
T 3rgz_A 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655 (768)
T ss_dssp EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCC
T ss_conf 11134443222233222100135563232002321100113310046274334033566579785880155587788414
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 99983330038621149935337788868975386303338956525567667647888358999500115367770461
Q 001591 553 SFPPSVFLSNNRINGTIPPEIGQLKHLHVLDLSRNNITGTIPSSISEIRNLEVLDLSSNDLHGSIPGSFEKLTFLSKFSV 632 (1048)
Q Consensus 553 ~~~~~l~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~l 632 (1048)
.-++.++|++|+++|.+|..++.+++|+.|||++|+++|.+|..++.+++|++|++++|+++|.+|.. ..+..+....+
T Consensus 656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~ 734 (768)
T 3rgz_A 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKF 734 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGG
T ss_pred CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC-HHHCCCCHHHH
T ss_conf 15787848688038878967847778998989788023868867757887897879688155608996-01024897775
Q ss_pred CCC-CCCCC
Q ss_conf 055-24236
Q 001591 633 ANN-HLQGT 640 (1048)
Q Consensus 633 ~~N-~l~~~ 640 (1048)
.+| .++|.
T Consensus 735 ~gN~~Lcg~ 743 (768)
T 3rgz_A 735 LNNPGLCGY 743 (768)
T ss_dssp CSCTEEEST
T ss_pred CCCCHHCCC
T ss_conf 698321088
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=504.00 Aligned_cols=581 Identities=21% Similarity=0.223 Sum_probs=461.6
Q ss_pred CEEEEEEECCCCCC----CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 30222361999999----98893899990389973236844328867995856899789879813558887658724677
Q 001591 65 CQWDGVVCGHGSTG----SNAGRVTMLILPRKGLKGIIPRSLGHLNQLKLLDLSCNHLEGVVPVELSNLKQLEVLDLSHN 140 (1048)
Q Consensus 65 c~w~gv~C~~~~~~----~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N 140 (1048)
|.++.|.|...... ..+.+++.|+++++++++..+..+.++++|++|+|++|.+++..|..+..+++|++|+|++|
T Consensus 4 ~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred EECCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCC
T ss_conf 67874487779805264124888768889899778759788717876758878899648569778740667688889998
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCC
Q ss_conf 253854533334566108970576567742-3334567542998017523575323554114444267634743544467
Q 001591 141 MLSGPVSGMLAGLNLIQSLNVSSNSFNGSL-FELGEFSNLAVFNISNNSFTGKLNSRIWSASKEIQILDLSMNHFMGSLQ 219 (1048)
Q Consensus 141 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 219 (1048)
.+++.++..|.++++|++|+|++|++.+.+ ..++.+++|++|++++|.+++. +...+..+++|+.|++++|.+++.+.
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCC-CCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCC-CCHHHCCCCCCCEEECCCCCCCCCCH
T ss_conf 56756854530388889898989966853966741567888898989952466-72111245567779745884365297
Q ss_pred C---CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHC---CCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 7---88999998898326779998991212899985998215667760134203---89998599815996888862001
Q 001591 220 G---LDHSPSLKQLHVDNNLLGGDLPDSLYSMSSLQHVSLSVNNFSGQLSEKIS---NLTSLRHLIIFGNQFSGKLPNVL 293 (1048)
Q Consensus 220 ~---l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~~p~~l 293 (1048)
. ...+++|+.|++++|.+.+..+..+..+.+|+.|+++++.+.+.....+. ..++|++|++++|.+++..|..+
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~ 242 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred HHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHH
T ss_conf 88624466632179888982565581555322344554305664680567778777531510088745774364686675
Q ss_pred CCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-----CCCC---
Q ss_conf 58444--4501246773347778335367898399902852237567566557766476235533558-----8984---
Q 001591 294 GNLTQ--LEFFVAHSNSFSGPLPLSLSLCSKLHVLDLRNNSLTGPIDLNFSGLSSLCTLDLATNHFSG-----PLPN--- 363 (1048)
Q Consensus 294 ~~l~~--L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~p~--- 363 (1048)
.+++. |+.|++++|.+++..+..+..+++|++|++++|.+.+..+..|.++++|+.|++++|...+ .+|.
T Consensus 243 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~ 322 (680)
T 1ziw_A 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322 (680)
T ss_dssp GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECT
T ss_pred HCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCH
T ss_conf 14676778887787887675680211674105685577885676586562678885577363313213333355454386
Q ss_pred -CCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCC--CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf -23588865544213532322453000267767577415885777--767510001366651675246756777884445
Q 001591 364 -SLSDCHDLKILSLAKNELSGQVPESFGKLTSLLFLSLSNNSFNH--LSGTLSVLQQCKNLTTLILTKNFVGEEIPENVG 440 (1048)
Q Consensus 364 -~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 440 (1048)
.+..+++|+.|++++|.+++..+..|..+++|++|++++|.+.. ++.........++|+.|++++|.+....+..+.
T Consensus 323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~ 402 (680)
T 1ziw_A 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred HHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHH
T ss_conf 56246777888879898268788557406568728988798014432353220245568676688999977767754420
Q ss_pred CCCCCCEEECCCCCCCCCCH-HHHHCCCCCCEEECCCCEECCCCCCCCCCCCCCCEEEECCCCCC--CCCCCCHHHHHHH
Q ss_conf 88767489824874657815-76530589968948675402589901014899874850278564--4588304555320
Q 001591 441 GFESLMVLALGNCGLKGHIP-VWLLRCKKLQVLDLSWNHFDGNIPPWIGQMENLFYLDFSNNTLT--GEIPKSLTELKSL 517 (1048)
Q Consensus 441 ~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L 517 (1048)
.+++|+.|++++|.+.+.+| ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. +.+|..+..+++|
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 77888888677875754357553257546127844899754227645500754310110146442256677645557878
Q ss_pred HCCCCCCCCCCCCCCCCCEEECCCCCCCCCC--CCCCCCCCEEEEECCCCCCCC--------CCCCCCCCCCCEEECCCC
Q ss_conf 0158899999877785530301456799677--888999983330038621149--------935337788868975386
Q 001591 518 ISSNCTSSNPTASAGIPLYVKHNRSTNGLPY--NQASSFPPSVFLSNNRINGTI--------PPEIGQLKHLHVLDLSRN 587 (1048)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~l~Ls~N~l~~~~--------p~~~~~l~~L~~L~Ls~N 587 (1048)
..++......+. ++. .....-++.+++++|++++.. +..++.+++|+.|+|++|
T Consensus 483 ~~L~Ls~N~l~~----------------i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N 546 (680)
T 1ziw_A 483 TILDLSNNNIAN----------------INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546 (680)
T ss_dssp CEEECCSSCCCC----------------CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCC----------------CCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCC
T ss_conf 999899998776----------------7944634553468885889973000000046774142337998888889999
Q ss_pred EECCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCC
Q ss_conf 3033389-565255676676478883589995001153677704610552423699998--446788865448988757
Q 001591 588 NITGTIP-SSISEIRNLEVLDLSSNDLHGSIPGSFEKLTFLSKFSVANNHLQGTIPTGG--QFYSFPNSSFEGNPGLCG 663 (1048)
Q Consensus 588 ~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~l~~N~l~~~~p~~~--~~~~~~~~~~~~n~~~c~ 663 (1048)
+++ .+| ..|..+++|+.|++++|++++..+..|..+++|+.+++++|++++.+|..- .+.++..+.+.|||+.|.
T Consensus 547 ~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 547 GFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCC-CCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCC
T ss_conf 788-779777346667522389999777679768378988888989999687059668301146657798318970257
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=492.55 Aligned_cols=446 Identities=22% Similarity=0.276 Sum_probs=242.9
Q ss_pred CCCHHHHHHHHHHHHCCCCCC---------CCCCCCCCCCCCEE---EEEEECCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 999888999999984199998---------87675799998302---223619999999889389999038997323684
Q 001591 33 SCDPSDLLALKEFAGNLTNGS---------IITSWSNESMCCQW---DGVVCGHGSTGSNAGRVTMLILPRKGLKGIIPR 100 (1048)
Q Consensus 33 ~~~~~~~~aL~~~k~~~~~~~---------~l~sw~~~~~cc~w---~gv~C~~~~~~~~~~~v~~l~l~~~~l~~~~~~ 100 (1048)
.....|+.||.+++.+++... ..++|+.+++||.| .||+|+. .++|+.|+|+++++.|.+|+
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~------~~~V~~L~L~~~~l~g~lp~ 99 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS------NGRVTGLSLEGFGASGRVPD 99 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT------TCCEEEEECTTSCCEEEECG
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC------CCCEEEEEECCCCCCCCCCH
T ss_conf 667788999999999758997454776776578877799800014779848767------89788998427665772885
Q ss_pred CCCCCCCCCEEECCCCCCC------C------CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCEEEECCCCCC
Q ss_conf 4328867995856899789------8------798135588876587246772538545333345-66108970576567
Q 001591 101 SLGHLNQLKLLDLSCNHLE------G------VVPVELSNLKQLEVLDLSHNMLSGPVSGMLAGL-NLIQSLNVSSNSFN 167 (1048)
Q Consensus 101 ~l~~l~~L~~L~Ls~n~i~------~------~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~ 167 (1048)
+++++++|+.|+|++|.+. + .+|... +.+|+ +++++|.+.+.++..+..+ ..+..+++....+.
T Consensus 100 ~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~ 176 (636)
T 4eco_A 100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176 (636)
T ss_dssp GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC
T ss_pred HHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHH--HHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 78568451189876885123774334532356733888--88887-6577755411706667788777764275546541
Q ss_pred CCCCCCCCCCCCCEEEEC--CCCCCCCCCHHHHHCCCCCCEEECCCCCCCC------------------CCCCCC--CCC
Q ss_conf 742333456754299801--7523575323554114444267634743544------------------467788--999
Q 001591 168 GSLFELGEFSNLAVFNIS--NNSFTGKLNSRIWSASKEIQILDLSMNHFMG------------------SLQGLD--HSP 225 (1048)
Q Consensus 168 ~~~~~l~~l~~L~~L~Ls--~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~------------------~~~~l~--~~~ 225 (1048)
. .....++.+.+. +|.+++ +|.. +..+++|++|++++|.+++ +|..+. +++
T Consensus 177 ~-----~~~~~l~~l~l~~~~n~l~~-ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~ 249 (636)
T 4eco_A 177 K-----SSRITLKDTQIGQLSNNITF-VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK 249 (636)
T ss_dssp C-----CCCCCCCTTTTTCCSCEEEE-ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred C-----CCCCCHHHHHHCCCCCCCCC-CCHH-HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCC
T ss_conf 0-----13344213001013677750-7877-725647878988688236642322122222100102486322004468
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCC-CHHHHHCCC------CCCCEEECCCCCCCCCCCC--CCCC
Q ss_conf 99889832677999899121289998599821566-776-013420389------9985998159968888620--0158
Q 001591 226 SLKQLHVDNNLLGGDLPDSLYSMSSLQHVSLSVNN-FSG-QLSEKISNL------TSLRHLIIFGNQFSGKLPN--VLGN 295 (1048)
Q Consensus 226 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~~L~L~~n~l~~~~p~--~l~~ 295 (1048)
+|++|++++|.+.+.+|..++.+++|++|++++|. +++ .+|..+..+ ++|++|++++|+++ .+|. .+++
T Consensus 250 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~ 328 (636)
T 4eco_A 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQK 328 (636)
T ss_dssp TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTT
T ss_pred CCCEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCHHHHCC
T ss_conf 788898048857762838883499978897847988766533578875430465788888989799377-6676555425
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC-CCEEECCCCCCCCCCCCCCCCCC--CCC
Q ss_conf 444450124677334777833536789839990285223756756655776-64762355335588984235888--655
Q 001591 296 LTQLEFFVAHSNSFSGPLPLSLSLCSKLHVLDLRNNSLTGPIDLNFSGLSS-LCTLDLATNHFSGPLPNSLSDCH--DLK 372 (1048)
Q Consensus 296 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~--~L~ 372 (1048)
+++|+.|++++|.++|.+| .+..+++|++|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+..+. +|+
T Consensus 329 l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~ 405 (636)
T 4eco_A 329 MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMS 405 (636)
T ss_dssp CTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEE
T ss_pred CCCCCEEECCCCCCCCCHH-HHCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCC-CCCHHHHHCCCCCCC
T ss_conf 7888989690880705166-6478898898989899403-033756510236868985298275-446655333457668
Q ss_pred EEECCCCCCCCCCCHHHC-------CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC--
Q ss_conf 442135323224530002-------67767577415885777767510001366651675246756777884445887--
Q 001591 373 ILSLAKNELSGQVPESFG-------KLTSLLFLSLSNNSFNHLSGTLSVLQQCKNLTTLILTKNFVGEEIPENVGGFE-- 443 (1048)
Q Consensus 373 ~L~L~~N~l~~~~p~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~-- 443 (1048)
.|++++|.+++..|..+. .+++|+.|++++|.+..++. ..+..+++|+.|++++|.+....+..+....
T Consensus 406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~--~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~ 483 (636)
T 4eco_A 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK--ELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483 (636)
T ss_dssp EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT--HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred EEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCH--HHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf 897748857886524420022011258988889772796686787--887158988989897997887397884044001
Q ss_pred -----CCCEEECCCCCCCCCCHHHHH--CCCCCCEEECCCCEECCCCCCCCCCCCCCCEEEECCCC
Q ss_conf -----674898248746578157653--05899689486754025899010148998748502785
Q 001591 444 -----SLMVLALGNCGLKGHIPVWLL--RCKKLQVLDLSWNHFDGNIPPWIGQMENLFYLDFSNNT 502 (1048)
Q Consensus 444 -----~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 502 (1048)
+|+.|++++|.+. .+|..+. .+++|+.|+|++|.+++ +|..+..+++|+.|++++|+
T Consensus 484 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR 547 (636)
T ss_dssp CTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB
T ss_pred CCCCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCC-CCHHHHCCCCCCEEECCCCC
T ss_conf 221477338989699388-16854534458876989898998877-68235308887878898886
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=481.09 Aligned_cols=517 Identities=20% Similarity=0.234 Sum_probs=409.2
Q ss_pred CEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCCEEECCCCCCC
Q ss_conf 302223619999999889389999038997323684432886799585689978987-9813558887658724677253
Q 001591 65 CQWDGVVCGHGSTGSNAGRVTMLILPRKGLKGIIPRSLGHLNQLKLLDLSCNHLEGV-VPVELSNLKQLEVLDLSHNMLS 143 (1048)
Q Consensus 65 c~w~gv~C~~~~~~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~p~~l~~l~~L~~L~Ls~N~l~ 143 (1048)
|.|..|.+ .+.+++.|+|+++.+++..+.++.++++|+.|+|++|.+.+. .|..|.++++|++|+|++|.+.
T Consensus 14 ~~L~~vP~-------lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 14 CNLTQVPQ-------VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp CCSSCCCS-------SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred CCCCCCCC-------CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCC
T ss_conf 99777898-------99986888887786783296677662137088678997744419778537877888879899585
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCC-CC--CCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCC-C
Q ss_conf 854533334566108970576567742-33--3456754299801752357532355411444426763474354446-7
Q 001591 144 GPVSGMLAGLNLIQSLNVSSNSFNGSL-FE--LGEFSNLAVFNISNNSFTGKLNSRIWSASKEIQILDLSMNHFMGSL-Q 219 (1048)
Q Consensus 144 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~--l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~ 219 (1048)
+..|..|.++++|++|+|++|.+.+.. .. +..+++|++|++++|.+++..+...+..+++|+.|++++|.+.... .
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred CCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHH
T ss_conf 31976715786658701767889734046764556679998889878642325665576388989898989847766788
Q ss_pred CCCCC--CCCCEEECCCCCCCCCCCCCCCCCCC------CCEEECCCCCCCCCHHHHHCCC---CCCCEEECCCC-----
Q ss_conf 78899--99988983267799989912128999------8599821566776013420389---99859981599-----
Q 001591 220 GLDHS--PSLKQLHVDNNLLGGDLPDSLYSMSS------LQHVSLSVNNFSGQLSEKISNL---TSLRHLIIFGN----- 283 (1048)
Q Consensus 220 ~l~~~--~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~n----- 283 (1048)
.+..+ ++|+.|++++|.+.+..+..+..+.+ |+.|++++|.+++..+..+... .+++.|.++.+
T Consensus 167 ~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~ 246 (844)
T 3j0a_A 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246 (844)
T ss_dssp GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred HCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCC
T ss_conf 75355677503578978866655455332237722357400796578868656778887642744100112121223466
Q ss_pred ----CCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf ----6888862001584--4445012467733477783353678983999028522375675665577664762355335
Q 001591 284 ----QFSGKLPNVLGNL--TQLEFFVAHSNSFSGPLPLSLSLCSKLHVLDLRNNSLTGPIDLNFSGLSSLCTLDLATNHF 357 (1048)
Q Consensus 284 ----~l~~~~p~~l~~l--~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 357 (1048)
.+.+..+..|..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|.++++|+.|++++|.+
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC
T ss_pred CCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCC
T ss_conf 44456688985565255547861898979945515863452589999998979818987968836888999898989978
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 58898423588865544213532322453000267767577415885777767510001366651675246756777884
Q 001591 358 SGPLPNSLSDCHDLKILSLAKNELSGQVPESFGKLTSLLFLSLSNNSFNHLSGTLSVLQQCKNLTTLILTKNFVGEEIPE 437 (1048)
Q Consensus 358 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~ 437 (1048)
++..|..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+..++. +++|+.|++++|.+. .+|.
T Consensus 327 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-------~~~L~~L~l~~N~l~-~l~~ 398 (844)
T 3j0a_A 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-------IPSIPDIFLSGNKLV-TLPK 398 (844)
T ss_dssp SCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS-------CCSCSEEEEESCCCC-CCCC
T ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCC-------CCCCCHHCCCCCCCC-CCCC
T ss_conf 85187884689999989898998776286661378889998898997786168-------898232005899723-1455
Q ss_pred CCCCCCCCCEEECCCCCCCCCC-HHHHHCCCCCCEEECCCCEECCCCCC-CCCCCCCCCEEEECCCCCCCCC-----CCC
Q ss_conf 4458876748982487465781-57653058996894867540258990-1014899874850278564458-----830
Q 001591 438 NVGGFESLMVLALGNCGLKGHI-PVWLLRCKKLQVLDLSWNHFDGNIPP-WIGQMENLFYLDFSNNTLTGEI-----PKS 510 (1048)
Q Consensus 438 ~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~-----p~~ 510 (1048)
. ..+++.|++++|.+.+.. +..+..+++|+.|++++|.+++..+. .+..+++|+.|++++|.+++.. |..
T Consensus 399 ~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~ 475 (844)
T 3j0a_A 399 I---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475 (844)
T ss_dssp C---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC
T ss_pred C---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 4---5543122145675345755666512776666667787125555433356687310024777736441013553555
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCEEC
Q ss_conf 45553200158899999877785530301456799677888999983330038621149935337788868975386303
Q 001591 511 LTELKSLISSNCTSSNPTASAGIPLYVKHNRSTNGLPYNQASSFPPSVFLSNNRINGTIPPEIGQLKHLHVLDLSRNNIT 590 (1048)
Q Consensus 511 l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 590 (1048)
+..+++| +.++|++|++++..|..+..+++|+.|+|++|+++
T Consensus 476 ~~~l~~L--------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 517 (844)
T 3j0a_A 476 FEGLSHL--------------------------------------QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517 (844)
T ss_dssp SSCBCCE--------------------------------------ECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCS
T ss_pred HCCCCCC--------------------------------------CEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCC
T ss_conf 4475536--------------------------------------57778898565539557045012215699999787
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 3389565255676676478883589995001153677704610552423699
Q 001591 591 GTIPSSISEIRNLEVLDLSSNDLHGSIPGSFEKLTFLSKFSVANNHLQGTIP 642 (1048)
Q Consensus 591 ~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~l~~N~l~~~~p 642 (1048)
+..|..+. ++|+.|++++|++++..|..+ .+|+.+++++|.+....+
T Consensus 518 ~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 518 VLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp SCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred CCCHHHHH--CCCCEEECCCCCCCCCCHHHH---CCCCEEEECCCCCCCCCC
T ss_conf 45710110--045588898884788896683---776889931997025366
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=479.70 Aligned_cols=529 Identities=20% Similarity=0.203 Sum_probs=272.6
Q ss_pred EEEEEECCCCCC----CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 222361999999----9889389999038997323684432886799585689978987981355888765872467725
Q 001591 67 WDGVVCGHGSTG----SNAGRVTMLILPRKGLKGIIPRSLGHLNQLKLLDLSCNHLEGVVPVELSNLKQLEVLDLSHNML 142 (1048)
Q Consensus 67 w~gv~C~~~~~~----~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l 142 (1048)
+..|.|...+.. ..+..++.|+++++.+++..+.+|.++++|++|+|++|.++++.|..|..+++|++|+|++|.+
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCC
T ss_conf 72377777980628677898675898158734717966725676652897889835524851136843367644889856
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCC-CCCCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCC-CC
Q ss_conf 385453333456610897057656774-2333456754299801752357532355411444426763474354446-77
Q 001591 143 SGPVSGMLAGLNLIQSLNVSSNSFNGS-LFELGEFSNLAVFNISNNSFTGKLNSRIWSASKEIQILDLSMNHFMGSL-QG 220 (1048)
Q Consensus 143 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~ 220 (1048)
++..+..+.++++|++|++++|.+++. +..+..+++|++|++++|++.+......+ .+++|+.|++++|.+.... ..
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC-CCTTCCEEECCSSCCCEECHHH
T ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCHHH
T ss_conf 545865523442153765212676657810122378223898879834114765456-8765687776568445549656
Q ss_pred CCCCCCCC--EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHCCCCCCCEEECCCCCCC-----CCCCCCC
Q ss_conf 88999998--8983267799989912128999859982156677601342038999859981599688-----8862001
Q 001591 221 LDHSPSLK--QLHVDNNLLGGDLPDSLYSMSSLQHVSLSVNNFSGQLSEKISNLTSLRHLIIFGNQFS-----GKLPNVL 293 (1048)
Q Consensus 221 l~~~~~L~--~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-----~~~p~~l 293 (1048)
+..+++|+ .|++++|.+.+..|..+.. .+|+.|++++|. ..+..+..+..+....+.-+.+. ...+..+
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~ 248 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGG
T ss_pred HHHHCCCCEEEEECCCCCCCCCCHHHHHH-CCCCCCCCCCCH---HHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHH
T ss_conf 33221564038966798147548667300-100135567726---67777651335644220020110264122686674
Q ss_pred CCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 5844--44501246773347778335367898399902852237567566557766476235533558898423588865
Q 001591 294 GNLT--QLEFFVAHSNSFSGPLPLSLSLCSKLHVLDLRNNSLTGPIDLNFSGLSSLCTLDLATNHFSGPLPNSLSDCHDL 371 (1048)
Q Consensus 294 ~~l~--~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 371 (1048)
..+. +++.+++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+++|
T Consensus 249 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 327 (606)
T 3t6q_A 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327 (606)
T ss_dssp GGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTC
T ss_pred CHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCC
T ss_conf 3032075059994457658557777445667888956288267-778214165468889771687686760233015768
Q ss_pred CEEECCCCCCCCCCCH-HHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 5442135323224530-002677675774158857777675100013666516752467567778844458876748982
Q 001591 372 KILSLAKNELSGQVPE-SFGKLTSLLFLSLSNNSFNHLSGTLSVLQQCKNLTTLILTKNFVGEEIPENVGGFESLMVLAL 450 (1048)
Q Consensus 372 ~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 450 (1048)
+.|++++|.+.+.++. .+..+++|++|++++|.+..+......+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 407 (606)
T 3t6q_A 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407 (606)
T ss_dssp SEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred CEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 98889899744434624550667589887889966645675221056788898989899677578887347745776878
Q ss_pred CCCCCCCCCHH-HHHCCCCCCEEECCCCEECCCCCCCCCCCCCCCEEEECCCCCCCC---CCCCHHHHHHHHCCCCCCCC
Q ss_conf 48746578157-653058996894867540258990101489987485027856445---88304555320015889999
Q 001591 451 GNCGLKGHIPV-WLLRCKKLQVLDLSWNHFDGNIPPWIGQMENLFYLDFSNNTLTGE---IPKSLTELKSLISSNCTSSN 526 (1048)
Q Consensus 451 ~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~~~~~~~~ 526 (1048)
++|.+.+..+. .+..+++|+.|++++|.+.+..|..++.+++|++|++++|.+++. .+..+..+++|
T Consensus 408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L--------- 478 (606)
T 3t6q_A 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL--------- 478 (606)
T ss_dssp TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC---------
T ss_pred CCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCC---------
T ss_conf 88867775652124176558889898985577687787378878889898998885434543124048876---------
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCCCCCCCCCCCEE
Q ss_conf 98777855303014567996778889999833300386211499353377888689753863033389565255676676
Q 001591 527 PTASAGIPLYVKHNRSTNGLPYNQASSFPPSVFLSNNRINGTIPPEIGQLKHLHVLDLSRNNITGTIPSSISEIRNLEVL 606 (1048)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 606 (1048)
+.+++++|++++..|..++.+++|+.|+|++|++++..|..+..+++| +|
T Consensus 479 -----------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L 528 (606)
T 3t6q_A 479 -----------------------------EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL 528 (606)
T ss_dssp -----------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EE
T ss_pred -----------------------------CEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EE
T ss_conf -----------------------------688799996670686463265678889898980686896684756651-89
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 4788835899950011536777046105524236
Q 001591 607 DLSSNDLHGSIPGSFEKLTFLSKFSVANNHLQGT 640 (1048)
Q Consensus 607 ~ls~N~l~~~~p~~l~~l~~L~~l~l~~N~l~~~ 640 (1048)
++++|++++..|..+..++.|+.+++++|.+.+.
T Consensus 529 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 529 NLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp ECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred ECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCC
T ss_conf 8768941426876625677878896779986166
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=477.22 Aligned_cols=521 Identities=20% Similarity=0.235 Sum_probs=293.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CC--CEE------------EEEEECCCCCCCCCCCEEEEEEC
Q ss_conf 988999888999999984199998876757999-----98--302------------22361999999988938999903
Q 001591 30 PFQSCDPSDLLALKEFAGNLTNGSIITSWSNES-----MC--CQW------------DGVVCGHGSTGSNAGRVTMLILP 90 (1048)
Q Consensus 30 ~~~~~~~~~~~aL~~~k~~~~~~~~l~sw~~~~-----~c--c~w------------~gv~C~~~~~~~~~~~v~~l~l~ 90 (1048)
..+.+..+|++||++||.++.++ +|+... +| |.| .||+|+. .++|+.|+|+
T Consensus 262 ~~~~~~~~d~~ALl~~k~~l~~~----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~------~~~V~~L~Ls 331 (876)
T 4ecn_A 262 KETAEYIKDYKALKAIWEALDGK----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN------NGRVTGLSLA 331 (876)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTGG----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT------TSCEEEEECT
T ss_pred CCCCCCHHHHHHHHHHHHHCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC------CCCEEEEECC
T ss_conf 64546317899999999973799----9886898653367764034666545335768428369------9979899872
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEC-CCCCCCCCCCCCCCCC----CCC--CEEECC----------CCCCCCCCCCC----
Q ss_conf 89973236844328867995856-8997898798135588----876--587246----------77253854533----
Q 001591 91 RKGLKGIIPRSLGHLNQLKLLDL-SCNHLEGVVPVELSNL----KQL--EVLDLS----------HNMLSGPVSGM---- 149 (1048)
Q Consensus 91 ~~~l~~~~~~~l~~l~~L~~L~L-s~n~i~~~~p~~l~~l----~~L--~~L~Ls----------~N~l~~~~~~~---- 149 (1048)
++++.|.+|++++++++|+.|+| ++|.+.|..+...... ... ..+... ...+.+..+..
T Consensus 332 ~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~ 411 (876)
T 4ecn_A 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN 411 (876)
T ss_dssp TTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
T ss_conf 47899948557741555628430125633566642223445441156788877766665420375111567878776507
Q ss_pred -------CCCCCCCCEEEECC--CCCCCCCCCCCCCCCCCEEEECCCCCCC-CCCHHHHHCCCCCCEEECCCCCCC-CCC
Q ss_conf -------33456610897057--6567742333456754299801752357-532355411444426763474354-446
Q 001591 150 -------LAGLNLIQSLNVSS--NSFNGSLFELGEFSNLAVFNISNNSFTG-KLNSRIWSASKEIQILDLSMNHFM-GSL 218 (1048)
Q Consensus 150 -------~~~l~~L~~L~Ls~--N~l~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~L~~L~Ls~n~l~-~~~ 218 (1048)
......++.+.+.. |.+++.|..++.+++|+.|+|++|++++ .++..+ +..+.|.+. .+|
T Consensus 412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~---------~~~s~n~~~g~iP 482 (876)
T 4ecn_A 412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDW---------EDANSDYAKQYEN 482 (876)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSC---------SCTTSHHHHHHTT
T ss_pred CCCCCCCCCCCCCHHHCEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCC---------CCCCCCCCCCCCC
T ss_conf 3324322235442312040566676152118875699987897968867887465322---------3322222244587
Q ss_pred CCCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCC-CHHHHHCCCC-------CCCEEECCCCCCCC
Q ss_conf 7788--99999889832677999899121289998599821566-776-0134203899-------98599815996888
Q 001591 219 QGLD--HSPSLKQLHVDNNLLGGDLPDSLYSMSSLQHVSLSVNN-FSG-QLSEKISNLT-------SLRHLIIFGNQFSG 287 (1048)
Q Consensus 219 ~~l~--~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l~-------~L~~L~L~~n~l~~ 287 (1048)
..+. .+++|+.|++++|.+.+.+|..++.+++|++|++++|+ +++ .+|..+.+++ +|++|++++|+++
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~- 561 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE- 561 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-
T ss_pred HHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCC-
T ss_conf 4440255999778987189887527387737999899989689876566461778752330155688319982289477-
Q ss_pred CCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC-CCEEECCCCCCCCCCCCC
Q ss_conf 8620--0158444450124677334777833536789839990285223756756655776-647623553355889842
Q 001591 288 KLPN--VLGNLTQLEFFVAHSNSFSGPLPLSLSLCSKLHVLDLRNNSLTGPIDLNFSGLSS-LCTLDLATNHFSGPLPNS 364 (1048)
Q Consensus 288 ~~p~--~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~p~~ 364 (1048)
.+|. .++++++|+.|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|+|++|.++ .+|..
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~ 637 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNI 637 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred CCCCHHHHHCCCCCCEEECCCCCCC-CCH-HHCCCCCCEEEECCCCCCC-CCHHHHHHCCCCCCEEECCCCCCC-CCCHH
T ss_conf 6187235515898898989799825-621-2247985007987187125-035877525114989998499787-47644
Q ss_pred CCCCCC--CCEEECCCCCCCCCCCHHH---C--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 358886--5544213532322453000---2--67767577415885777767510001366651675246756777884
Q 001591 365 LSDCHD--LKILSLAKNELSGQVPESF---G--KLTSLLFLSLSNNSFNHLSGTLSVLQQCKNLTTLILTKNFVGEEIPE 437 (1048)
Q Consensus 365 l~~l~~--L~~L~L~~N~l~~~~p~~~---~--~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~ 437 (1048)
+..+.. |+.|++++|.+++.+|... . .+++|+.|++++|.+..++. ..+..+++|+.|++++|.+. .+|.
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~--~~~~~l~~L~~L~Ls~N~L~-~ip~ 714 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT--ELFATGSPISTIILSNNLMT-SIPE 714 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH--HHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred HHCCCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCCCCCH--HHHCCCCCCCEEECCCCCCC-CCCH
T ss_conf 52255677788977088478864320000001357976889831996886597--88713898899989899688-5496
Q ss_pred CCCC--------CCCCCEEECCCCCCCCCCHHHHH--CCCCCCEEECCCCEECCCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 4458--------87674898248746578157653--0589968948675402589901014899874850278564458
Q 001591 438 NVGG--------FESLMVLALGNCGLKGHIPVWLL--RCKKLQVLDLSWNHFDGNIPPWIGQMENLFYLDFSNNTLTGEI 507 (1048)
Q Consensus 438 ~~~~--------l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 507 (1048)
.+.. +++|+.|++++|++. .+|..+. .+++|+.|+|++|.+++ +|..+..+++|+.|++++|+
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~----- 787 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR----- 787 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-----
T ss_pred HHHCCCCCCCCCCCCCCEEECCCCCCC-CCHHHHHHCCCCCCCEEEECCCCCCC-CCHHHHCCCCCCEEECCCCC-----
T ss_conf 784555334321487158988899786-65277624427986989908997876-10566159998899887997-----
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 83045553200158899999877785530301456799677888999983330038621149935337788868975386
Q 001591 508 PKSLTELKSLISSNCTSSNPTASAGIPLYVKHNRSTNGLPYNQASSFPPSVFLSNNRINGTIPPEIGQLKHLHVLDLSRN 587 (1048)
Q Consensus 508 p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 587 (1048)
++++|++.+.+|..++.+++|+.|+|++|
T Consensus 788 ---------------------------------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 788 ---------------------------------------------------DAEGNRILRQWPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp ---------------------------------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred ---------------------------------------------------CCCCCCCCCCCHHHHHCCCCCCEEECCCC
T ss_conf ---------------------------------------------------76656324448688836998788988799
Q ss_pred EECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 303338956525567667647888358999500115367770461055242
Q 001591 588 NITGTIPSSISEIRNLEVLDLSSNDLHGSIPGSFEKLTFLSKFSVANNHLQ 638 (1048)
Q Consensus 588 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~l~~N~l~ 638 (1048)
++ +.+|..+. ++|+.|+|++|++....+..+.....+..+.+.+|.+.
T Consensus 817 ~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 817 DI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp CC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred CC-CCCCHHHC--CCCCEEECCCCCCCCCCHHHCCCCCCCHHEEECCCCCC
T ss_conf 78-74087662--87788999799888117677256542311034688865
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=473.17 Aligned_cols=528 Identities=20% Similarity=0.216 Sum_probs=450.4
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 99903899732368443288679958568997898798135588876587246772538545333345661089705765
Q 001591 86 MLILPRKGLKGIIPRSLGHLNQLKLLDLSCNHLEGVVPVELSNLKQLEVLDLSHNMLSGPVSGMLAGLNLIQSLNVSSNS 165 (1048)
Q Consensus 86 ~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 165 (1048)
.++..+.+++. +|..+. ..++.|+|++|.++++.|..|..+++|++|+|++|.+.+..+..|.++++|++|+|++|+
T Consensus 16 ~~~c~~~~l~~-iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLNE-IPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCSS-CCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCCCC-CCCCCC--CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCC
T ss_conf 37777798062-867789--867589815873471796672567665289788983552485113684336764488985
Q ss_pred CCCCC-CCCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 67742-333456754299801752357532355411444426763474354446-7788999998898326779998991
Q 001591 166 FNGSL-FELGEFSNLAVFNISNNSFTGKLNSRIWSASKEIQILDLSMNHFMGSL-QGLDHSPSLKQLHVDNNLLGGDLPD 243 (1048)
Q Consensus 166 l~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~l~~~~~L~~L~L~~n~l~~~~p~ 243 (1048)
+.+.. ..++.+++|++|++++|++++ ++...+..+++|++|++++|.+.+.. +.+..+++|++|++++|.+.+..+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred CCCCCHHHHCCCCCCCEEECCCCCCCC-CCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHH
T ss_conf 654586552344215376521267665-7810122378223898879834114765456876568777656844554965
Q ss_pred CCCCCCCCC--EEECCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCC
Q ss_conf 212899985--9982156677601342038999859981599688886200158444450124677334-----777833
Q 001591 244 SLYSMSSLQ--HVSLSVNNFSGQLSEKISNLTSLRHLIIFGNQFSGKLPNVLGNLTQLEFFVAHSNSFS-----GPLPLS 316 (1048)
Q Consensus 244 ~l~~l~~L~--~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-----~~~p~~ 316 (1048)
.++.+++|+ .|++++|.+++..|..+.. .+|++|++++|. ..+..+..+.++....+..+.+. ...+..
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~ 247 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred HHHHHCCCCEEEEECCCCCCCCCCHHHHHH-CCCCCCCCCCCH---HHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHH
T ss_conf 633221564038966798147548667300-100135567726---6777765133564422002011026412268667
Q ss_pred CCCCC--CCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCC
Q ss_conf 53678--9839990285223756756655776647623553355889842358886554421353232245300026776
Q 001591 317 LSLCS--KLHVLDLRNNSLTGPIDLNFSGLSSLCTLDLATNHFSGPLPNSLSDCHDLKILSLAKNELSGQVPESFGKLTS 394 (1048)
Q Consensus 317 l~~l~--~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 394 (1048)
+..+. +|+.|++++|.+.+..+..|..+++|++|++++|.++ .+|..+..+++|+.|++++|.+++..|..+..+++
T Consensus 248 ~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 326 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326 (606)
T ss_dssp GGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred HCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCC
T ss_conf 43032075059994457658557777445667888956288267-77821416546888977168768676023301576
Q ss_pred CCEEECCCCCCCC-CCCCCCCCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCE
Q ss_conf 7577415885777-7675100013666516752467567778--844458876748982487465781576530589968
Q 001591 395 LLFLSLSNNSFNH-LSGTLSVLQQCKNLTTLILTKNFVGEEI--PENVGGFESLMVLALGNCGLKGHIPVWLLRCKKLQV 471 (1048)
Q Consensus 395 L~~L~L~~n~l~~-~~~~~~~l~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 471 (1048)
|+.|++++|.+.. ++. ..+..+++|++|++++|.+.... +..+..+++|+.|++++|.+.+..|..+..+++|+.
T Consensus 327 L~~L~l~~n~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 404 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGT--GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404 (606)
T ss_dssp CSEEECCSCSSCCBCCS--STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSE
T ss_pred CCEEECCCCCCCCCCCH--HHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCE
T ss_conf 89888989974443462--4550667589887889966645675221056788898989899677578887347745776
Q ss_pred EECCCCEECCCCCC-CCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 94867540258990-10148998748502785644588304555320015889999987778553030145679967788
Q 001591 472 LDLSWNHFDGNIPP-WIGQMENLFYLDFSNNTLTGEIPKSLTELKSLISSNCTSSNPTASAGIPLYVKHNRSTNGLPYNQ 550 (1048)
Q Consensus 472 L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 550 (1048)
|++++|.+.+..|. .+..+++|+.|++++|.+.+..|..+..+++|
T Consensus 405 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------------------------- 451 (606)
T 3t6q_A 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL--------------------------------- 451 (606)
T ss_dssp EECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC---------------------------------
T ss_pred EECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCC---------------------------------
T ss_conf 87888867775652124176558889898985577687787378878---------------------------------
Q ss_pred CCCCCCEEEEECCCCCCC---CCCCCCCCCCCCEEECCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 899998333003862114---99353377888689753863033389565255676676478883589995001153677
Q 001591 551 ASSFPPSVFLSNNRINGT---IPPEIGQLKHLHVLDLSRNNITGTIPSSISEIRNLEVLDLSSNDLHGSIPGSFEKLTFL 627 (1048)
Q Consensus 551 ~~~~~~~l~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L 627 (1048)
+.+++++|++.+. .+..+..+++|+.|+|++|++++..|..+..+++|++|++++|++++..|..+..++.|
T Consensus 452 -----~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 452 -----QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp -----CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred -----CEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf -----889898998885434543124048876688799996670686463265678889898980686896684756651
Q ss_pred CEEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 70461055242369999-8446788865448988757
Q 001591 628 SKFSVANNHLQGTIPTG-GQFYSFPNSSFEGNPGLCG 663 (1048)
Q Consensus 628 ~~l~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~~c~ 663 (1048)
.+++++|++++.+|.. ..+.++..+.+.|||+.|.
T Consensus 527 -~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 527 -YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp -EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred -EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCC
T ss_conf -898768941426876625677878896779986166
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=471.19 Aligned_cols=521 Identities=21% Similarity=0.239 Sum_probs=243.0
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 93899990389973236844328867995856899789879813558887658724677253854533334566108970
Q 001591 82 GRVTMLILPRKGLKGIIPRSLGHLNQLKLLDLSCNHLEGVVPVELSNLKQLEVLDLSHNMLSGPVSGMLAGLNLIQSLNV 161 (1048)
Q Consensus 82 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 161 (1048)
.+++.|++.++.+.+..+.++.++++|+.|+|++|.++++.+..|..+++|++|++++|.+++.++..|.++++|++|++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf 76758878899648569778740667688889998567568545303888898989899668539667415678888989
Q ss_pred CCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCHHH-HHCCCCCCEEECCCCCCCCCCCC-CCCC--------------
Q ss_conf 576567742-333456754299801752357532355-41144442676347435444677-8899--------------
Q 001591 162 SSNSFNGSL-FELGEFSNLAVFNISNNSFTGKLNSRI-WSASKEIQILDLSMNHFMGSLQG-LDHS-------------- 224 (1048)
Q Consensus 162 s~N~l~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~-l~~~-------------- 224 (1048)
++|.+.+.+ ..+..+++|++|++++|.+++..+..+ +...++|+.|++++|.+.+.++. +..+
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 208 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCH
T ss_pred CCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 89952466721112455677797458843652978862446663217988898256558155532234455430566468
Q ss_pred -------------CCCCEEECCCCCCCCCCCCCCCCCCC--CCEEECCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCC
Q ss_conf -------------99988983267799989912128999--859982156677601342038999859981599688886
Q 001591 225 -------------PSLKQLHVDNNLLGGDLPDSLYSMSS--LQHVSLSVNNFSGQLSEKISNLTSLRHLIIFGNQFSGKL 289 (1048)
Q Consensus 225 -------------~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 289 (1048)
++|+.|++++|.+.+..+..+..+.. |++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 209 ~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 288 (680)
T 1ziw_A 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288 (680)
T ss_dssp HHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEEC
T ss_pred HHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
T ss_conf 05677787775315100887457743646866751467677888778788767568021167410568557788567658
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-----CCC----CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 2001584444501246773347-----778----3353678983999028522375675665577664762355335588
Q 001591 290 PNVLGNLTQLEFFVAHSNSFSG-----PLP----LSLSLCSKLHVLDLRNNSLTGPIDLNFSGLSSLCTLDLATNHFSGP 360 (1048)
Q Consensus 290 p~~l~~l~~L~~L~l~~n~l~~-----~~p----~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 360 (1048)
|..++++++|+.|++++|...+ .+| ..+..+++|+.|++++|.+.+..+..|.++++|++|++++|.++..
T Consensus 289 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~ 368 (680)
T 1ziw_A 289 SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368 (680)
T ss_dssp TTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCC
T ss_pred HHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHH
T ss_conf 65626788855773633132133333554543865624677788887989826878855740656872898879801443
Q ss_pred --CCCCCCCC--CCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf --98423588--865544213532322453000267767577415885777-7675100013666516752467567778
Q 001591 361 --LPNSLSDC--HDLKILSLAKNELSGQVPESFGKLTSLLFLSLSNNSFNH-LSGTLSVLQQCKNLTTLILTKNFVGEEI 435 (1048)
Q Consensus 361 --~p~~l~~l--~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 435 (1048)
....+..+ ++|+.|++++|++++..|..|..+++|+.|++++|.+.. ++. ..+..+++|++|++++|.+....
T Consensus 369 ~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~ 446 (680)
T 1ziw_A 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG--QEWRGLENIFEIYLSYNKYLQLT 446 (680)
T ss_dssp EECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS--GGGTTCTTCCEEECCSCSEEECC
T ss_pred HCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCCEEECCCCCCCEEC
T ss_conf 2353220245568676688999977767754420778888886778757543575--53257546127844899754227
Q ss_pred CCCCCCCCCCCEEECCCCCCC--CCCHHHHHCCCCCCEEECCCCEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCC---
Q ss_conf 844458876748982487465--781576530589968948675402589901014899874850278564458830---
Q 001591 436 PENVGGFESLMVLALGNCGLK--GHIPVWLLRCKKLQVLDLSWNHFDGNIPPWIGQMENLFYLDFSNNTLTGEIPKS--- 510 (1048)
Q Consensus 436 ~~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~--- 510 (1048)
+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|.+++..|..+.++++|++|++++|.+++..+..
T Consensus 447 ~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 526 (680)
T 1ziw_A 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG 526 (680)
T ss_dssp TTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTT
T ss_pred HHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCC
T ss_conf 64550075431011014644225667764555787899989999877679446345534688858899730000000467
Q ss_pred -----HHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf -----455532001588999998777855303014567996778889999833300386211499353377888689753
Q 001591 511 -----LTELKSLISSNCTSSNPTASAGIPLYVKHNRSTNGLPYNQASSFPPSVFLSNNRINGTIPPEIGQLKHLHVLDLS 585 (1048)
Q Consensus 511 -----l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 585 (1048)
+..++ -++.+++++|+++...+..|+++++|+.|+|+
T Consensus 527 ~~~~~~~~l~--------------------------------------~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 568 (680)
T 1ziw_A 527 GPIYFLKGLS--------------------------------------HLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568 (680)
T ss_dssp SCCCTTTTCT--------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCHHHCCCC--------------------------------------CCCEEECCCCCCCCCCHHHCCCCCCCCEEECC
T ss_conf 7414233799--------------------------------------88888899997887797773466675223899
Q ss_pred CCEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCEEEECCCCCCCCCC
Q ss_conf 8630333895652556766764788835899950011-53677704610552423699
Q 001591 586 RNNITGTIPSSISEIRNLEVLDLSSNDLHGSIPGSFE-KLTFLSKFSVANNHLQGTIP 642 (1048)
Q Consensus 586 ~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~-~l~~L~~l~l~~N~l~~~~p 642 (1048)
+|++++..+..|..+++|+.|++++|++++..|..+. .+++|+.+++++|.+...-+
T Consensus 569 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 9977767976837898888898999968705966830114665779831897025776
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=465.89 Aligned_cols=521 Identities=20% Similarity=0.198 Sum_probs=438.0
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCCEEEECCC
Q ss_conf 999038997323684432886799585689978987981355888765872467725385-4533334566108970576
Q 001591 86 MLILPRKGLKGIIPRSLGHLNQLKLLDLSCNHLEGVVPVELSNLKQLEVLDLSHNMLSGP-VSGMLAGLNLIQSLNVSSN 164 (1048)
Q Consensus 86 ~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N 164 (1048)
..+..+++++.+. . ..++++.|||++|.|+++.+..|.++++|++|+|++|.+.+. .+..|.++++|++|+|++|
T Consensus 8 ~~dcs~~~L~~vP-~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLTQVP-Q---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSSCCC-S---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEECCCCCCCCCC-C---CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCC
T ss_conf 8982379977789-8---99986888887786783296677662137088678997744419778537877888879899
Q ss_pred CCCCC-CCCCCCCCCCCEEEECCCCCCCCCC-HHHHHCCCCCCEEECCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCC
Q ss_conf 56774-2333456754299801752357532-3554114444267634743544467--788999998898326779998
Q 001591 165 SFNGS-LFELGEFSNLAVFNISNNSFTGKLN-SRIWSASKEIQILDLSMNHFMGSLQ--GLDHSPSLKQLHVDNNLLGGD 240 (1048)
Q Consensus 165 ~l~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~--~l~~~~~L~~L~L~~n~l~~~ 240 (1048)
.+.+. +..+..+++|++|+|++|.+++..+ ...+..+++|+.|++++|.+.+... .+.++++|++|++++|.+.+.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred CCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEE
T ss_conf 58531976715786658701767889734046764556679998889878642325665576388989898989847766
Q ss_pred CCCCCCCC--CCCCEEECCCCCCCCCHHHHHCCCCC------CCEEECCCCCCCCCCCCCCCCC---CCCCCCCCCC---
Q ss_conf 99121289--99859982156677601342038999------8599815996888862001584---4445012467---
Q 001591 241 LPDSLYSM--SSLQHVSLSVNNFSGQLSEKISNLTS------LRHLIIFGNQFSGKLPNVLGNL---TQLEFFVAHS--- 306 (1048)
Q Consensus 241 ~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~l~~--- 306 (1048)
.+..+..+ ++|+.|+++.|.+.+..|..+..+.+ |+.|++++|.+++..+..+... +++..+.+..
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred CHHHCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCC
T ss_conf 78875355677503578978866655455332237722357400796578868656778887642744100112121223
Q ss_pred ------CCCCCCCCCCCCCC--CCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf ------73347778335367--8983999028522375675665577664762355335588984235888655442135
Q 001591 307 ------NSFSGPLPLSLSLC--SKLHVLDLRNNSLTGPIDLNFSGLSSLCTLDLATNHFSGPLPNSLSDCHDLKILSLAK 378 (1048)
Q Consensus 307 ------n~l~~~~p~~l~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 378 (1048)
+.+.+.....+..+ ++|+.|++++|.+.+..+..|..+++|+.|+|++|.+++..|..|..+++|+.|++++
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred CCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCC
T ss_conf 46644456688985565255547861898979945515863452589999998979818987968836888999898989
Q ss_pred CCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 32322453000267767577415885777767510001366651675246756777884445887674898248746578
Q 001591 379 NELSGQVPESFGKLTSLLFLSLSNNSFNHLSGTLSVLQQCKNLTTLILTKNFVGEEIPENVGGFESLMVLALGNCGLKGH 458 (1048)
Q Consensus 379 N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 458 (1048)
|.+++..+..|..+++|+.|++++|.+..++. ..+..+++|+.|++++|.+... ..+++|+.|++++|.+. .
T Consensus 324 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~--~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~ 395 (844)
T 3j0a_A 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD--QTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-T 395 (844)
T ss_dssp CCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS--SCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-C
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCH--HHHCCCCCCCEEECCCCCCCCC-----CCCCCCCHHCCCCCCCC-C
T ss_conf 97885187884689999989898998776286--6613788899988989977861-----68898232005899723-1
Q ss_pred CHHHHHCCCCCCEEECCCCEECCCC-CCCCCCCCCCCEEEECCCCCCCCCCCC-HHHHHHHHCCCCCCCCCCCCCCCCCE
Q ss_conf 1576530589968948675402589-901014899874850278564458830-45553200158899999877785530
Q 001591 459 IPVWLLRCKKLQVLDLSWNHFDGNI-PPWIGQMENLFYLDFSNNTLTGEIPKS-LTELKSLISSNCTSSNPTASAGIPLY 536 (1048)
Q Consensus 459 ~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~~~~~~~~~~~~~~~~~~ 536 (1048)
+|.. ..+++.|++++|.+++.. +..+.++++|+.|++++|.+++..+.. +..+++
T Consensus 396 l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~-------------------- 452 (844)
T 3j0a_A 396 LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPS-------------------- 452 (844)
T ss_dssp CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTT--------------------
T ss_pred CCCC---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCC--------------------
T ss_conf 4554---55431221456753457556665127766666677871255554333566873--------------------
Q ss_pred EECCCCCCCCCCCCCCCCCCEEEEECCCCC-----CCCCCCCCCCCCCCEEECCCCEECCCCCCCCCCCCCCCEEECCCC
Q ss_conf 301456799677888999983330038621-----149935337788868975386303338956525567667647888
Q 001591 537 VKHNRSTNGLPYNQASSFPPSVFLSNNRIN-----GTIPPEIGQLKHLHVLDLSRNNITGTIPSSISEIRNLEVLDLSSN 611 (1048)
Q Consensus 537 ~~~~~~~~~l~~~~~~~~~~~l~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N 611 (1048)
++.+++++|.++ +..|..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|
T Consensus 453 ------------------L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 514 (844)
T 3j0a_A 453 ------------------LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514 (844)
T ss_dssp ------------------CCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC
T ss_pred ------------------CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCC
T ss_conf ------------------10024777736441013553555447553657778898565539557045012215699999
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3589995001153677704610552423699998446788865448988757
Q 001591 612 DLHGSIPGSFEKLTFLSKFSVANNHLQGTIPTGGQFYSFPNSSFEGNPGLCG 663 (1048)
Q Consensus 612 ~l~~~~p~~l~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~ 663 (1048)
++++..|..+. ++|+.|++++|++++.+|.. +.++..+.+.|||+.|.
T Consensus 515 ~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 515 RLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICE 562 (844)
T ss_dssp CCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCS
T ss_pred CCCCCCHHHHH--CCCCEEECCCCCCCCCCHHH--HCCCCEEEECCCCCCCC
T ss_conf 78745710110--04558889888478889668--37768899319970253
Done!