BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001592
(1048 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 598 bits (1541), Expect = e-171, Method: Compositional matrix adjust.
Identities = 342/810 (42%), Positives = 488/810 (60%), Gaps = 46/810 (5%)
Query: 24 TGELLPA-NPDILEGVDDLIQLSYLNEPSVLNNIQYRY-SRDMIYSKAGPVLIAVNPFKA 81
T EL P NPDIL G +DL LSYL+EP+VL+N++ R+ +IY+ G VL+A+NP++
Sbjct: 56 TKELPPLRNPDILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQ 115
Query: 82 VPIYGNKFITAYRQKVMDS--PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKF 139
+PIYG I AY + M PH++A+A+ AY +M D NQSII+SGESGAGKT +AK+
Sbjct: 116 LPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKY 175
Query: 140 AMQYLAALGGGSE--GIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKIC 197
AM+Y A + G + +E ++L +N I+E+ GNAKT+RNDNSSRFGK IEI F +I
Sbjct: 176 AMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRII 235
Query: 198 GAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGA--PSFLKERLNLKVANDYNYLNQSEC 255
GA ++T+LLEKSRVV A ER+YHIFYQLCA A P F + L L AN ++Y Q
Sbjct: 236 GANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEF--KTLRLGNANYFHYTKQGGS 293
Query: 256 LTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIA 315
IDG+DDA+ N +A ++ I + F +LA +L LGN+ F D+++
Sbjct: 294 PVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPK 353
Query: 316 DEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFD 375
+ +T LMG +E+ L K+ ++ K ++ AI++RDALAK IY +LF+
Sbjct: 354 HDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFN 413
Query: 376 WIVEQINKSLE-VGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFK 434
WIV+ +NK+L KQ + I +LDIYGFE+F+ NSFEQFCINYANE+LQQ FN H+FK
Sbjct: 414 WIVDHVNKALHSTVKQHS--FIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFK 471
Query: 435 LEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKL-KQ 493
LEQEEY + + WT ++F DN+ C+NLIE K +GVL LLDEE PK +D T+A KL
Sbjct: 472 LEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLYNT 530
Query: 494 HLGSNSCFKGER--GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLL-SSCTCQVL- 549
HL + F+ R +AF I+H+A +V Y GFLEKN+D + + I++L SS ++L
Sbjct: 531 HLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLP 590
Query: 550 QLFXXXXXXXXXXXXXXXXXXXLD----------------TQKQSVGTKFKGQLFKLMHQ 593
+LF L K++VG +F+ L LM
Sbjct: 591 ELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMET 650
Query: 594 LENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGR 653
L T PH++RCIKPN + P ++E +QQ R CGVLE +RIS +G+P+R +QEF R
Sbjct: 651 LNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSR 710
Query: 654 YGVLLSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQ-A 712
Y VL+ +K + D VL++ + + YQ G TK++ R+GQ+A LE R L+ A
Sbjct: 711 YRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAA 770
Query: 713 IIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRRHASLGKSCSAVVPE------- 765
IR+QK RG+ R ++ + IT+Q + RG R L ++ +A++ +
Sbjct: 771 CIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYV 830
Query: 766 --IRDEQLRE-IICLQSAIRGWLVRKQLKM 792
R + +R+ I LQ+ +RG+LVR + +M
Sbjct: 831 VRKRYQCMRDATIALQALLRGYLVRNKYQM 860
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 576 bits (1485), Expect = e-164, Method: Compositional matrix adjust.
Identities = 316/701 (45%), Positives = 447/701 (63%), Gaps = 36/701 (5%)
Query: 31 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFI 90
NP +GV+D+ +LSYLNEP+V +N++ RY++D+IY+ +G L+AVNPFK +PIY + +
Sbjct: 92 NPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMV 151
Query: 91 TAY--RQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 148
+ R++ +PH++AI+D AY M+ D NQS++I+GESGAGKTE K +QYLA++
Sbjct: 152 DIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVA 211
Query: 149 G-----GSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQT 203
G GS +E +ILQ N ILEAFGNAKT+RN+NSSRFGK IEI F++ G I GA IQ+
Sbjct: 212 GRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQS 271
Query: 204 FLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDD 263
+LLEKSRVV + ER+YHIFYQL AGA + K+ L+L +NYLNQS C+ I GV D
Sbjct: 272 YLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSD 331
Query: 264 AQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADE-AVTTA 322
++ F +A+DIV +E++ F ++A +L LGNI F+ E V+ D+ A+ A
Sbjct: 332 SEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEG--AVLKDKTALNAA 389
Query: 323 AMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQIN 382
+ + G + L AL +I AG+D +A+ L ++++ SRDAL K +YG LF W+V++IN
Sbjct: 390 STVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKIN 449
Query: 383 KSLEVGKQCTGRS---INILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEE 439
L C R I +LDI GFE FK NSFEQ CINY NE+LQQ FN H+FKLEQEE
Sbjct: 450 NVL-----CQERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEE 504
Query: 440 YELDGVDWTRVEFE-DNEECLNLIE-KKPLGVLSLLDEESNFPKATDLTFANKLKQHLGS 497
Y + ++WT ++F D++ ++LI+ ++P G+L+LLDE+S FP ATD T KL H
Sbjct: 505 YLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSK 564
Query: 498 NSCFKGERGR----AFSIRHYAGEVPYDTNGFLEKNRDPLQTDI-IQLLSSCTCQVLQLF 552
+ K E R F + HYAG+V Y+ +LEKN+DPLQ D+ + S V +LF
Sbjct: 565 KNA-KYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 623
Query: 553 XXXXXXXXXXXXXXXXXXXLDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQL 612
+V ++K QL LM LE T PHF+RCI PN+KQL
Sbjct: 624 NDPNIASRAKKGANFI---------TVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQL 674
Query: 613 PGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE-KQLSQDPLSIS 671
P E+ +VL Q RC GVLE +RI+R G+P R+ + +F RY +L + ++D +
Sbjct: 675 PAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKAT 734
Query: 672 VAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQA 712
AVL+ N+ PE Y+ G TK++ R+GQLA +E+ R+Q L++
Sbjct: 735 DAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEAREQRLES 775
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 576 bits (1485), Expect = e-164, Method: Compositional matrix adjust.
Identities = 316/701 (45%), Positives = 447/701 (63%), Gaps = 36/701 (5%)
Query: 31 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFI 90
NP +GV+D+ +LSYLNEP+V +N++ RY++D+IY+ +G L+AVNPFK +PIY + +
Sbjct: 92 NPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMV 151
Query: 91 TAY--RQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 148
+ R++ +PH++AI+D AY M+ D NQS++I+GESGAGKTE K +QYLA++
Sbjct: 152 DIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVA 211
Query: 149 G-----GSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQT 203
G GS +E +ILQ N ILEAFGNAKT+RN+NSSRFGK IEI F++ G I GA IQ+
Sbjct: 212 GRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQS 271
Query: 204 FLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDD 263
+LLEKSRVV + ER+YHIFYQL AGA + K+ L+L +NYLNQS C+ I GV D
Sbjct: 272 YLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSD 331
Query: 264 AQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADE-AVTTA 322
++ F +A+DIV +E++ F ++A +L LGNI F+ E V+ D+ A+ A
Sbjct: 332 SEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEG--AVLKDKTALNAA 389
Query: 323 AMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQIN 382
+ + G + L AL +I AG+D +A+ L ++++ SRDAL K +YG LF W+V++IN
Sbjct: 390 STVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKIN 449
Query: 383 KSLEVGKQCTGRS---INILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEE 439
L C R I +LDI GFE FK NSFEQ CINY NE+LQQ FN H+FKLEQEE
Sbjct: 450 NVL-----CQERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEE 504
Query: 440 YELDGVDWTRVEFE-DNEECLNLIE-KKPLGVLSLLDEESNFPKATDLTFANKLKQHLGS 497
Y + ++WT ++F D++ ++LI+ ++P G+L+LLDE+S FP ATD T KL H
Sbjct: 505 YLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSK 564
Query: 498 NSCFKGERGR----AFSIRHYAGEVPYDTNGFLEKNRDPLQTDI-IQLLSSCTCQVLQLF 552
+ K E R F + HYAG+V Y+ +LEKN+DPLQ D+ + S V +LF
Sbjct: 565 KNA-KYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 623
Query: 553 XXXXXXXXXXXXXXXXXXXLDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQL 612
+V ++K QL LM LE T PHF+RCI PN+KQL
Sbjct: 624 NDPNIASRAKKGANFI---------TVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQL 674
Query: 613 PGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE-KQLSQDPLSIS 671
P E+ +VL Q RC GVLE +RI+R G+P R+ + +F RY +L + ++D +
Sbjct: 675 PAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKAT 734
Query: 672 VAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQA 712
AVL+ N+ PE Y+ G TK++ R+GQLA +E+ R+Q L++
Sbjct: 735 DAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEAREQRLES 775
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 576 bits (1484), Expect = e-164, Method: Compositional matrix adjust.
Identities = 315/696 (45%), Positives = 444/696 (63%), Gaps = 36/696 (5%)
Query: 31 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFI 90
NP +GV+D+ +LSYLNEP+V +N++ RY++D+IY+ +G L+AVNPFK +PIY + +
Sbjct: 81 NPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMV 140
Query: 91 TAY--RQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 148
+ R++ +PH++AI+D AY M+ D NQS++I+GESGAGKTE K +QYLA++
Sbjct: 141 DIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVA 200
Query: 149 G-----GSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQT 203
G GS +E +ILQ N ILEAFGNAKT+RN+NSSRFGK IEI F++ G I GA IQ+
Sbjct: 201 GRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQS 260
Query: 204 FLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDD 263
+LLEKSRVV + ER+YHIFYQL AGA + K+ L+L +NYLNQS C+ I GV D
Sbjct: 261 YLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSD 320
Query: 264 AQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADE-AVTTA 322
++ F +A+DIV +E++ F ++A +L LGNI F+ E V+ D+ A+ A
Sbjct: 321 SEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEG--AVLKDKTALNAA 378
Query: 323 AMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQIN 382
+ + G + L AL +I AG+D +A+ L ++++ SRDAL K +YG LF W+V++IN
Sbjct: 379 STVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKIN 438
Query: 383 KSLEVGKQCTGRS---INILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEE 439
L C R I +LDIYGFE FK NSFEQ CINY NE+LQQ FN H+FKLEQEE
Sbjct: 439 NVL-----CQERKAYFIGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEE 493
Query: 440 YELDGVDWTRVEFE-DNEECLNLIE-KKPLGVLSLLDEESNFPKATDLTFANKLKQHLGS 497
Y + ++WT ++F D++ ++LI+ ++P G+L+LLDE+S FP ATD T KL H
Sbjct: 494 YLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSK 553
Query: 498 NSCFKGERGR----AFSIRHYAGEVPYDTNGFLEKNRDPLQTDI-IQLLSSCTCQVLQLF 552
+ K E R F + HYAG+V Y+ +LEKN+DPLQ D+ + S V +LF
Sbjct: 554 KNA-KYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 612
Query: 553 XXXXXXXXXXXXXXXXXXXLDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQL 612
+V ++K QL LM LE T PHF+RCI PN+KQL
Sbjct: 613 NDPNIASRAKKGANFI---------TVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQL 663
Query: 613 PGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE-KQLSQDPLSIS 671
P E+ +VL Q RC GVLE +RI+R G+P R+ + +F RY +L + ++D +
Sbjct: 664 PAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKAT 723
Query: 672 VAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRK 707
AVL+ N+ PE Y+ G TK++ R+GQLA +E+ R+
Sbjct: 724 DAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEARE 759
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 576 bits (1484), Expect = e-164, Method: Compositional matrix adjust.
Identities = 316/702 (45%), Positives = 446/702 (63%), Gaps = 36/702 (5%)
Query: 31 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFI 90
NP +GV+D+ +LSYLNEP+V +N++ RY++D+IY+ +G L+AVNPFK +PIY + +
Sbjct: 92 NPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMV 151
Query: 91 TAY--RQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 148
+ R++ +PH++AI+D AY M+ D NQS++I+GESGAGKTE K +QYLA++
Sbjct: 152 DIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVA 211
Query: 149 G-----GSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQT 203
G GS +E +ILQ N ILEAFGNAKT+RN+NSSRFGK IEI F++ G I GA IQ+
Sbjct: 212 GRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQS 271
Query: 204 FLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDD 263
+LLEKSRVV + ER+YHIFYQL AGA + K+ L+L +NYLNQS C+ I GV D
Sbjct: 272 YLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSD 331
Query: 264 AQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADE-AVTTA 322
++ F +A+DIV +E++ F ++A +L LGNI F+ E V+ D+ A+ A
Sbjct: 332 SEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEG--AVLKDKTALNAA 389
Query: 323 AMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQIN 382
+ + G + L AL +I AG+D +A+ L ++++ SRDAL K +YG LF W+V++IN
Sbjct: 390 STVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKIN 449
Query: 383 KSLEVGKQCTGRS---INILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEE 439
L C R I +LDI GFE FK NSFEQ CINY NE+LQQ FN H+FKLEQEE
Sbjct: 450 NVL-----CQERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEE 504
Query: 440 YELDGVDWTRVEFE-DNEECLNLIE-KKPLGVLSLLDEESNFPKATDLTFANKLKQHLGS 497
Y + ++WT ++F D++ ++LI+ ++P G+L+LLDE+S FP ATD T KL H
Sbjct: 505 YLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSK 564
Query: 498 NSCFKGERGR----AFSIRHYAGEVPYDTNGFLEKNRDPLQTDI-IQLLSSCTCQVLQLF 552
+ K E R F + HYAG+V Y+ +LEKN+DPLQ D+ + S V +LF
Sbjct: 565 KNA-KYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 623
Query: 553 XXXXXXXXXXXXXXXXXXXLDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQL 612
+V ++K QL LM LE T PHF+RCI PN+KQL
Sbjct: 624 NDPNIASRAKKGANFI---------TVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQL 674
Query: 613 PGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE-KQLSQDPLSIS 671
P E+ +VL Q RC GVLE +RI+R G+P R+ + +F RY +L + ++D +
Sbjct: 675 PAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKAT 734
Query: 672 VAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQAI 713
AVL+ N+ PE Y+ G TK++ R+GQLA +E+ R+Q + I
Sbjct: 735 DAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEAREQRISEI 776
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 576 bits (1484), Expect = e-164, Method: Compositional matrix adjust.
Identities = 316/701 (45%), Positives = 447/701 (63%), Gaps = 36/701 (5%)
Query: 31 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFI 90
NP +GV+D+ +LSYLNEP+V +N++ RY++D+IY+ +G L+AVNPFK +PIY + +
Sbjct: 80 NPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMV 139
Query: 91 TAY--RQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 148
+ R++ +PH++AI+D AY M+ D NQS++I+GESGAGKTE K +QYLA++
Sbjct: 140 DIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVA 199
Query: 149 G-----GSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQT 203
G GS +E +ILQ N ILEAFGNAKT+RN+NSSRFGK IEI F++ G I GA IQ+
Sbjct: 200 GRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQS 259
Query: 204 FLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDD 263
+LLEKSRVV + ER+YHIFYQL AGA + K+ L+L +NYLNQS C+ I GV D
Sbjct: 260 YLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSD 319
Query: 264 AQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADE-AVTTA 322
++ F +A+DIV +E++ F ++A +L LGNI F+ E V+ D+ A+ A
Sbjct: 320 SEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEG--AVLKDKTALNAA 377
Query: 323 AMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQIN 382
+ + G + L AL +I AG+D +A+ L ++++ SRDAL K +YG LF W+V++IN
Sbjct: 378 STVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKIN 437
Query: 383 KSLEVGKQCTGRS---INILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEE 439
L C R I +LDI GFE FK NSFEQ CINY NE+LQQ FN H+FKLEQEE
Sbjct: 438 NVL-----CQERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEE 492
Query: 440 YELDGVDWTRVEFE-DNEECLNLIE-KKPLGVLSLLDEESNFPKATDLTFANKLKQHLGS 497
Y + ++WT ++F D++ ++LI+ ++P G+L+LLDE+S FP ATD T KL H
Sbjct: 493 YLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSK 552
Query: 498 NSCFKGERGR----AFSIRHYAGEVPYDTNGFLEKNRDPLQTDI-IQLLSSCTCQVLQLF 552
+ K E R F + HYAG+V Y+ +LEKN+DPLQ D+ + S V +LF
Sbjct: 553 KNA-KYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 611
Query: 553 XXXXXXXXXXXXXXXXXXXLDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQL 612
+V ++K QL LM LE T PHF+RCI PN+KQL
Sbjct: 612 NDPNIASRAKKGANFI---------TVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQL 662
Query: 613 PGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE-KQLSQDPLSIS 671
P E+ +VL Q RC GVLE +RI+R G+P R+ + +F RY +L + ++D +
Sbjct: 663 PAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKAT 722
Query: 672 VAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQA 712
AVL+ N+ PE Y+ G TK++ R+GQLA +E+ R+Q L++
Sbjct: 723 DAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEAREQRLES 763
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 576 bits (1484), Expect = e-164, Method: Compositional matrix adjust.
Identities = 316/702 (45%), Positives = 446/702 (63%), Gaps = 36/702 (5%)
Query: 31 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFI 90
NP +GV+D+ +LSYLNEP+V +N++ RY++D+IY+ +G L+AVNPFK +PIY + +
Sbjct: 92 NPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMV 151
Query: 91 TAY--RQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 148
+ R++ +PH++AI+D AY M+ D NQS++I+GESGAGKTE K +QYLA++
Sbjct: 152 DIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVA 211
Query: 149 G-----GSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQT 203
G GS +E +ILQ N ILEAFGNAKT+RN+NSSRFGK IEI F++ G I GA IQ+
Sbjct: 212 GRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQS 271
Query: 204 FLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDD 263
+LLEKSRVV + ER+YHIFYQL AGA + K+ L+L +NYLNQS C+ I GV D
Sbjct: 272 YLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSD 331
Query: 264 AQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADE-AVTTA 322
++ F +A+DIV +E++ F ++A +L LGNI F+ E V+ D+ A+ A
Sbjct: 332 SEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEG--AVLKDKTALNAA 389
Query: 323 AMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQIN 382
+ + G + L AL +I AG+D +A+ L ++++ SRDAL K +YG LF W+V++IN
Sbjct: 390 STVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKIN 449
Query: 383 KSLEVGKQCTGRS---INILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEE 439
L C R I +LDI GFE FK NSFEQ CINY NE+LQQ FN H+FKLEQEE
Sbjct: 450 NVL-----CQERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEE 504
Query: 440 YELDGVDWTRVEFE-DNEECLNLIE-KKPLGVLSLLDEESNFPKATDLTFANKLKQHLGS 497
Y + ++WT ++F D++ ++LI+ ++P G+L+LLDE+S FP ATD T KL H
Sbjct: 505 YLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSK 564
Query: 498 NSCFKGERGR----AFSIRHYAGEVPYDTNGFLEKNRDPLQTDI-IQLLSSCTCQVLQLF 552
+ K E R F + HYAG+V Y+ +LEKN+DPLQ D+ + S V +LF
Sbjct: 565 KNA-KYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 623
Query: 553 XXXXXXXXXXXXXXXXXXXLDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQL 612
+V ++K QL LM LE T PHF+RCI PN+KQL
Sbjct: 624 NDPNIASRAKKGANFI---------TVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQL 674
Query: 613 PGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE-KQLSQDPLSIS 671
P E+ +VL Q RC GVLE +RI+R G+P R+ + +F RY +L + ++D +
Sbjct: 675 PAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKAT 734
Query: 672 VAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQAI 713
AVL+ N+ PE Y+ G TK++ R+GQLA +E+ R+Q + I
Sbjct: 735 DAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEAREQRISEI 776
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 575 bits (1481), Expect = e-164, Method: Compositional matrix adjust.
Identities = 316/701 (45%), Positives = 446/701 (63%), Gaps = 36/701 (5%)
Query: 31 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFI 90
NP +GV+D+ +LSYLNEP+V +N++ RY++D+IY+ +G L+AVNPFK +PIY + +
Sbjct: 80 NPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKIIPIYTQEMV 139
Query: 91 TAY--RQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 148
+ R++ +PH++AI+D AY M+ D NQS++I+GESGAGKTE K +QYLA++
Sbjct: 140 DIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVA 199
Query: 149 G-----GSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQT 203
G GS +E +ILQ N ILEAFGNAKT+RN+NSSRFGK IEI F++ G I GA IQ+
Sbjct: 200 GRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQS 259
Query: 204 FLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDD 263
+LLEKSRVV + ER+YHIFYQL AGA + K+ L+L +NYLNQS C+ I GV D
Sbjct: 260 YLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSD 319
Query: 264 AQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADE-AVTTA 322
++ F +A+DIV +E++ F ++A +L LGNI F+ E V+ D+ A+ A
Sbjct: 320 SEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEG--AVLKDKTALNAA 377
Query: 323 AMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQIN 382
+ + G + L AL +I AG+D +A+ L ++++ SRDAL K +YG LF W+V +IN
Sbjct: 378 STVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVIKIN 437
Query: 383 KSLEVGKQCTGRS---INILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEE 439
L C R I +LDI GFE FK NSFEQ CINY NE+LQQ FN H+FKLEQEE
Sbjct: 438 NVL-----CQERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEE 492
Query: 440 YELDGVDWTRVEFE-DNEECLNLIE-KKPLGVLSLLDEESNFPKATDLTFANKLKQHLGS 497
Y + ++WT ++F D++ ++LI+ ++P G+L+LLDE+S FP ATD T KL H
Sbjct: 493 YLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSK 552
Query: 498 NSCFKGERGR----AFSIRHYAGEVPYDTNGFLEKNRDPLQTDI-IQLLSSCTCQVLQLF 552
+ K E R F + HYAG+V Y+ +LEKN+DPLQ D+ + S V +LF
Sbjct: 553 KNA-KYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 611
Query: 553 XXXXXXXXXXXXXXXXXXXLDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQL 612
+V ++K QL LM LE T PHF+RCI PN+KQL
Sbjct: 612 NDPNIASRAKKGANFI---------TVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQL 662
Query: 613 PGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE-KQLSQDPLSIS 671
P E+ +VL Q RC GVLE +RI+R G+P R+ + +F RY +L + ++D +
Sbjct: 663 PAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKAT 722
Query: 672 VAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQA 712
AVL+ N+ PE Y+ G TK++ R+GQLA +E+ R+Q L++
Sbjct: 723 DAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEAREQRLES 763
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 574 bits (1480), Expect = e-164, Method: Compositional matrix adjust.
Identities = 314/696 (45%), Positives = 444/696 (63%), Gaps = 36/696 (5%)
Query: 31 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFI 90
NP +GV+D+ +LSYLNEP+V +N++ RY++D+IY+ +G L+AVNPFK +PIY + +
Sbjct: 81 NPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMV 140
Query: 91 TAY--RQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 148
+ R++ +PH++AI+D AY M+ D NQS++I+GESGAGKTE K +QYLA++
Sbjct: 141 DIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVA 200
Query: 149 G-----GSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQT 203
G GS +E +ILQ N ILEAFGNAKT+RN+NSSRFGK IEI F++ G I GA IQ+
Sbjct: 201 GRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQS 260
Query: 204 FLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDD 263
+LLEKSRVV + ER+YHIFYQL AGA + K+ L+L +NYLNQS C+ I GV D
Sbjct: 261 YLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSD 320
Query: 264 AQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADE-AVTTA 322
++ F +A+DIV +E++ F ++A +L LGNI F+ E V+ D+ A+ A
Sbjct: 321 SEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEG--AVLKDKTALNAA 378
Query: 323 AMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQIN 382
+ + G + L AL +I AG+D +A+ L ++++ SRDAL K +YG LF W+V++IN
Sbjct: 379 STVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKIN 438
Query: 383 KSLEVGKQCTGRS---INILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEE 439
L C R I +LDIYGFE FK NSFEQ CINY NE+LQQ FN H+FKLEQEE
Sbjct: 439 NVL-----CQERKAYFIGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEE 493
Query: 440 YELDGVDWTRVEFE-DNEECLNLIE-KKPLGVLSLLDEESNFPKATDLTFANKLKQHLGS 497
Y + ++WT ++F D++ ++LI+ ++P G+L+LLDE+S FP ATD T KL H
Sbjct: 494 YLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSK 553
Query: 498 NSCFKGERGR----AFSIRHYAGEVPYDTNGFLEKNRDPLQTDI-IQLLSSCTCQVLQLF 552
+ K E R F + HYAG+V Y+ +LEKN+DPLQ D+ + S V +LF
Sbjct: 554 KNA-KYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 612
Query: 553 XXXXXXXXXXXXXXXXXXXLDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQL 612
+V ++K QL LM LE T PHF+RCI PN+KQL
Sbjct: 613 NDPNIASRAKKGANFI---------TVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQL 663
Query: 613 PGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE-KQLSQDPLSIS 671
P E+ +VL Q RC GVLE +RI+R G+P R+ + +F RY +L + ++D +
Sbjct: 664 PAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKAT 723
Query: 672 VAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRK 707
AVL+ N+ PE ++ G TK++ R+GQLA +E+ R+
Sbjct: 724 DAVLKHLNIDPEQFRFGITKIFFRAGQLARIEEARE 759
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 573 bits (1476), Expect = e-163, Method: Compositional matrix adjust.
Identities = 314/696 (45%), Positives = 443/696 (63%), Gaps = 36/696 (5%)
Query: 31 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFI 90
NP +GV+D+ +LSYLNEP+V +N++ RY++D+IY+ +G L+AVNPFK +PIY + +
Sbjct: 81 NPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMV 140
Query: 91 TAY--RQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 148
+ R++ +PH++AI+D AY M+ D NQS++I+GESGAGKTE K +QYLA++
Sbjct: 141 DIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVA 200
Query: 149 G-----GSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQT 203
G GS +E +ILQ N ILEAFGNAKT+RN+NSSRFGK IEI F++ G I GA IQ+
Sbjct: 201 GRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQS 260
Query: 204 FLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDD 263
+LLEKSRVV + ER+YHIFYQL AGA + K+ L+L +NYLNQS C+ I GV D
Sbjct: 261 YLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSD 320
Query: 264 AQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADE-AVTTA 322
++ F +A+DIV +E++ F ++A +L LGNI F+ E V+ D+ A+ A
Sbjct: 321 SEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEG--AVLKDKTALNAA 378
Query: 323 AMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQIN 382
+ + G + L AL +I AG+D +A+ L ++++ SRDAL K +YG LF W+V++IN
Sbjct: 379 STVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKIN 438
Query: 383 KSLEVGKQCTGRS---INILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEE 439
L C R I +LDI GFE FK NSFEQ CINY NE+LQQ FN H+FKLEQEE
Sbjct: 439 NVL-----CQERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEE 493
Query: 440 YELDGVDWTRVEFE-DNEECLNLIE-KKPLGVLSLLDEESNFPKATDLTFANKLKQHLGS 497
Y + ++WT ++F D++ ++LI+ ++P G+L+LLDE+S FP ATD T KL H
Sbjct: 494 YLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSK 553
Query: 498 NSCFKGERGR----AFSIRHYAGEVPYDTNGFLEKNRDPLQTDI-IQLLSSCTCQVLQLF 552
+ K E R F + HYAG+V Y+ +LEKN+DPLQ D+ + S V +LF
Sbjct: 554 KNA-KYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 612
Query: 553 XXXXXXXXXXXXXXXXXXXLDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQL 612
+V ++K QL LM LE T PHF+RCI PN+KQL
Sbjct: 613 NDPNIASRAKKGANFI---------TVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQL 663
Query: 613 PGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE-KQLSQDPLSIS 671
P E+ +VL Q RC GVLE +RI+R G+P R+ + +F RY +L + ++D +
Sbjct: 664 PAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKAT 723
Query: 672 VAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRK 707
AVL+ N+ PE Y+ G TK++ R+GQLA +E+ R+
Sbjct: 724 DAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEARE 759
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 572 bits (1475), Expect = e-163, Method: Compositional matrix adjust.
Identities = 324/743 (43%), Positives = 454/743 (61%), Gaps = 36/743 (4%)
Query: 24 TGELLPA-NPDILEGVDDLIQLSYLNEPSVLNNIQYRY-SRDMIYSKAGPVLIAVNPFKA 81
T EL P NPDIL G +DL LSYL+EP+VL+N++ R+ +IY+ G VL+A+NP++
Sbjct: 56 TKELPPLRNPDILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQ 115
Query: 82 VPIYGNKFITAYRQKVMDS--PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKF 139
+PIYG I AY + M PH++A+A+ AY +M D NQSII+SGESGAGKT +AK+
Sbjct: 116 LPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKY 175
Query: 140 AMQYLAALGGGSE--GIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKIC 197
AM+Y A + G + +E ++L +N I+E+ GNAKT+RNDNSSRFGK IEI F +I
Sbjct: 176 AMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRII 235
Query: 198 GAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGA--PSFLKERLNLKVANDYNYLNQSEC 255
GA ++T+LLEKSRVV A ER+YHIFYQLCA A P F + L L AN ++Y Q
Sbjct: 236 GANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEF--KTLRLGNANYFHYTKQGGS 293
Query: 256 LTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIA 315
IDG+DDA+ N +A ++ I + F +LA +L LGN+ F D+++
Sbjct: 294 PVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPK 353
Query: 316 DEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFD 375
+ +T LMG +E+ L K+ ++ K ++ AI++RDALAK IY +LF+
Sbjct: 354 HDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFN 413
Query: 376 WIVEQINKSLE-VGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFK 434
WIV+ +NK+L KQ + I +LDIYGFE+F+ NSFEQFCINYANE+LQQ FN H+FK
Sbjct: 414 WIVDHVNKALHSTVKQHS--FIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFK 471
Query: 435 LEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKL-KQ 493
LEQEEY + + WT ++F DN+ C+NLIE K +GVL LLDEE PK +D T+A KL
Sbjct: 472 LEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLYNT 530
Query: 494 HLGSNSCFKGER--GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLL-SSCTCQVL- 549
HL + F+ R +AF I+H+A +V Y GFLEKN+D + + I++L SS ++L
Sbjct: 531 HLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLP 590
Query: 550 QLFXXXXXXXXXXXXXXXXXXXLD----------------TQKQSVGTKFKGQLFKLMHQ 593
+LF L K++VG +F+ L LM
Sbjct: 591 ELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMET 650
Query: 594 LENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGR 653
L T PH++RCIKPN + P ++E +QQ R CGVLE +RIS +G+P+R +QEF R
Sbjct: 651 LNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSR 710
Query: 654 YGVLLSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQ-A 712
Y VL+ +K + D VL++ + + YQ G TK++ R+GQ+A LE R L+ A
Sbjct: 711 YRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAA 770
Query: 713 IIRLQKCFRGYQARSRFRELCNG 735
IR+QK RG+ R ++ + G
Sbjct: 771 CIRIQKTIRGWLMRKKYMRMRRG 793
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 572 bits (1475), Expect = e-163, Method: Compositional matrix adjust.
Identities = 314/699 (44%), Positives = 442/699 (63%), Gaps = 36/699 (5%)
Query: 31 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFI 90
NP +GV+D+ +LSYLNEP+V +N++ RY++D+IY+ +G L+AVNPFK +PIY + +
Sbjct: 81 NPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMV 140
Query: 91 TAY--RQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 148
+ R++ +PH++AI+D AY M+ D NQS++I+GESGAGKTE K +QYLA++
Sbjct: 141 DIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVA 200
Query: 149 G-----GSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQT 203
G GS +E +ILQ N ILEAFGNAKT+RN+NSS FGK IEI F+ G I GA IQ+
Sbjct: 201 GRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQFNNAGFISGASIQS 260
Query: 204 FLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDD 263
+LLEKSRVV + ER+YHIFYQL AGA + K+ L+L +NYLNQS C+ I GV D
Sbjct: 261 YLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSD 320
Query: 264 AQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADE-AVTTA 322
F +A+DIV +E++ F ++A +L LGNI F+ E V+ D+ A+ A
Sbjct: 321 EDEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEG--AVLKDKTALNAA 378
Query: 323 AMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQIN 382
+ + G + L AL +I AG+D +A+ L ++++ SRDAL K +YG LF W+V++IN
Sbjct: 379 STVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKIN 438
Query: 383 KSLEVGKQCTGRS---INILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEE 439
L C+ R I +LDI GFE FK NSFEQ CINY NE+LQQ FN H+FK+EQEE
Sbjct: 439 NVL-----CSERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEE 493
Query: 440 YELDGVDWTRVEFE-DNEECLNLIE-KKPLGVLSLLDEESNFPKATDLTFANKLKQHLGS 497
Y + ++WT ++F D++ ++LI+ ++P G+L+LLDE+S FP ATD T KL H
Sbjct: 494 YLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSK 553
Query: 498 NSCFKGERGR----AFSIRHYAGEVPYDTNGFLEKNRDPLQTDI-IQLLSSCTCQVLQLF 552
+ K E R F + HYAG+V Y+ +LEKN+DPLQ D+ + S V +LF
Sbjct: 554 KNA-KYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 612
Query: 553 XXXXXXXXXXXXXXXXXXXLDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQL 612
+V ++K QL LM LE T PHF+RCI PN+KQL
Sbjct: 613 NDPNIASRAKKGANFI---------TVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQL 663
Query: 613 PGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE-KQLSQDPLSIS 671
P E+ +VL Q RC GVLE +RI+R G+P R+ + +F RY +L + ++D +
Sbjct: 664 PAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKAT 723
Query: 672 VAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVL 710
AVL+ N+ PE Y+ G TK++ R+GQLA +E+ R+Q L
Sbjct: 724 DAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEAREQRL 762
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 572 bits (1474), Expect = e-163, Method: Compositional matrix adjust.
Identities = 314/696 (45%), Positives = 443/696 (63%), Gaps = 36/696 (5%)
Query: 31 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFI 90
NP +GV+D+ +LSYLNEP+V +N++ RY++D+IY+ +G L+AVNPFK +PIY + +
Sbjct: 81 NPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMV 140
Query: 91 TAY--RQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 148
+ R++ +PH++AI+D AY M+ D NQS++I+GESGAGKTE K +QYLA++
Sbjct: 141 DIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVA 200
Query: 149 G-----GSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQT 203
G GS +E +ILQ N ILEAFGNAKT+RN+NSSRFGK IEI F++ G I GA IQ+
Sbjct: 201 GRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQS 260
Query: 204 FLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDD 263
+LLEKSRVV + ER+YHIFYQL AGA + K+ L+L +NYLNQS C+ I GV D
Sbjct: 261 YLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSD 320
Query: 264 AQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADE-AVTTA 322
++ F +A+DIV +E++ F ++A +L LGNI F+ E V+ D+ A+ A
Sbjct: 321 SEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEG--AVLKDKTALNAA 378
Query: 323 AMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQIN 382
+ + G + L AL +I AG+D +A+ L ++++ SRDAL K +YG LF W+V++IN
Sbjct: 379 STVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKIN 438
Query: 383 KSLEVGKQCTGRS---INILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEE 439
L C R I +LDI GFE FK NSFEQ CINY NE+LQQ FN H+FKLEQEE
Sbjct: 439 NVL-----CQERKAYFIGVLDIEGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEE 493
Query: 440 YELDGVDWTRVEFE-DNEECLNLIE-KKPLGVLSLLDEESNFPKATDLTFANKLKQHLGS 497
Y + ++WT ++F D++ ++LI+ ++P G+L+LLDE+S FP ATD T KL H
Sbjct: 494 YLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSK 553
Query: 498 NSCFKGERGR----AFSIRHYAGEVPYDTNGFLEKNRDPLQTDI-IQLLSSCTCQVLQLF 552
+ K E R F + HYAG+V Y+ +LEKN+DPLQ D+ + S V +LF
Sbjct: 554 KNA-KYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 612
Query: 553 XXXXXXXXXXXXXXXXXXXLDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQL 612
+V ++K QL LM LE T PHF+RCI PN+KQL
Sbjct: 613 NDPNIASRAKKGANFI---------TVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQL 663
Query: 613 PGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE-KQLSQDPLSIS 671
P E+ +VL Q RC GVLE +RI+R G+P R+ + +F RY +L + ++D +
Sbjct: 664 PAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKAT 723
Query: 672 VAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRK 707
AVL+ N+ PE Y+ G TK++ R+GQLA +E+ R+
Sbjct: 724 DAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEARE 759
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 572 bits (1473), Expect = e-163, Method: Compositional matrix adjust.
Identities = 314/696 (45%), Positives = 442/696 (63%), Gaps = 36/696 (5%)
Query: 31 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFI 90
NP +GV+D+ +LSYLNEP+V +N++ RY++D+IY+ +G L+AVNPFK +PIY + +
Sbjct: 81 NPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMV 140
Query: 91 TAY--RQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 148
+ R++ +PH++AI+D AY M+ D NQS++I+GESGAGKTE K +QYLA++
Sbjct: 141 DIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVA 200
Query: 149 G-----GSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQT 203
G GS +E +ILQ N ILEAFGNAKT+RN+NSSRFGK IEI F+ G I GA IQ+
Sbjct: 201 GRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQS 260
Query: 204 FLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDD 263
+LLEKSRVV + ER+YHIFYQL AGA + K+ L+L +NYLNQS C+ I GV D
Sbjct: 261 YLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSD 320
Query: 264 AQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADE-AVTTA 322
++ F +A+DIV +E++ F ++A +L LGNI F+ E V+ D+ A+ A
Sbjct: 321 SEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEG--AVLKDKTALNAA 378
Query: 323 AMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQIN 382
+ + G + L AL +I AG+D +A+ L ++++ SRDAL K +YG LF W+V++IN
Sbjct: 379 STVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKIN 438
Query: 383 KSLEVGKQCTGRS---INILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEE 439
L C R I +LDI GFE FK NSFEQ CINY NE+LQQ FN H+FKLEQEE
Sbjct: 439 NVL-----CQERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEE 493
Query: 440 YELDGVDWTRVEFE-DNEECLNLIE-KKPLGVLSLLDEESNFPKATDLTFANKLKQHLGS 497
Y + ++WT ++F D++ ++LI+ ++P G+L+LLDE+S FP ATD T KL H
Sbjct: 494 YLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSK 553
Query: 498 NSCFKGERGR----AFSIRHYAGEVPYDTNGFLEKNRDPLQTDI-IQLLSSCTCQVLQLF 552
+ K E R F + HYAG+V Y+ +LEKN+DPLQ D+ + S V +LF
Sbjct: 554 KNA-KYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 612
Query: 553 XXXXXXXXXXXXXXXXXXXLDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQL 612
+V ++K QL LM LE T PHF+RCI PN+KQL
Sbjct: 613 NDPNIASRAKKGANFI---------TVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQL 663
Query: 613 PGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE-KQLSQDPLSIS 671
P E+ +VL Q RC GVLE +RI+R G+P R+ + +F RY +L + ++D +
Sbjct: 664 PAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKAT 723
Query: 672 VAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRK 707
AVL+ N+ PE Y+ G TK++ R+GQLA +E+ R+
Sbjct: 724 DAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEARE 759
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 572 bits (1473), Expect = e-163, Method: Compositional matrix adjust.
Identities = 313/696 (44%), Positives = 443/696 (63%), Gaps = 36/696 (5%)
Query: 31 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFI 90
NP +GV+D+ +LSYLNEP+V +N++ RY++D+IY+ +G L+AVNPFK +PIY + +
Sbjct: 81 NPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMV 140
Query: 91 TAY--RQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 148
+ R++ +PH++AI+D AY M+ D NQS++I+GESGAGKTE K +QYLA++
Sbjct: 141 DIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVA 200
Query: 149 G-----GSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQT 203
G GS +E +ILQ N ILEAFGNAKT+RN+N+SRFGK IEI F++ G I GA IQ+
Sbjct: 201 GRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNASRFGKFIEIQFNSAGFISGASIQS 260
Query: 204 FLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDD 263
+LLEKSRVV + ER+YHIFYQL AGA + K+ L+L +NYLNQS C+ I GV D
Sbjct: 261 YLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSD 320
Query: 264 AQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADE-AVTTA 322
++ F +A+DIV +E++ F ++A +L LGNI F+ E V+ D+ A+ A
Sbjct: 321 SEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEG--AVLKDKTALNAA 378
Query: 323 AMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQIN 382
+ + G + L AL +I AG+D +A+ L ++++ SRDAL K +YG LF W+V++IN
Sbjct: 379 STVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKIN 438
Query: 383 KSLEVGKQCTGRS---INILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEE 439
L C R I +LDI GFE FK NSFEQ CINY NE+LQQ FN H+FKLEQEE
Sbjct: 439 NVL-----CQERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEE 493
Query: 440 YELDGVDWTRVEFE-DNEECLNLIE-KKPLGVLSLLDEESNFPKATDLTFANKLKQHLGS 497
Y + ++WT ++F D++ ++LI+ ++P G+L+LLDE+S FP ATD T KL H
Sbjct: 494 YLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSK 553
Query: 498 NSCFKGERGR----AFSIRHYAGEVPYDTNGFLEKNRDPLQTDI-IQLLSSCTCQVLQLF 552
+ K E R F + HYAG+V Y+ +LEKN+DPLQ D+ + S V +LF
Sbjct: 554 KNA-KYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 612
Query: 553 XXXXXXXXXXXXXXXXXXXLDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQL 612
+V ++K QL LM LE T PHF+RCI PN+KQL
Sbjct: 613 NDPNIASRAKKGANFI---------TVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQL 663
Query: 613 PGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE-KQLSQDPLSIS 671
P E+ +VL Q RC GVLE +RI+R G+P R+ + +F RY +L + ++D +
Sbjct: 664 PAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKAT 723
Query: 672 VAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRK 707
AVL+ N+ PE Y+ G TK++ R+GQLA +E+ R+
Sbjct: 724 DAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEARE 759
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 571 bits (1472), Expect = e-163, Method: Compositional matrix adjust.
Identities = 319/725 (44%), Positives = 452/725 (62%), Gaps = 36/725 (4%)
Query: 2 IQSTSGDEAFVLLSNGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYS 61
I S + D S+G +V + NP +GV+D+ +LSYLNEP+V +N++ RY+
Sbjct: 52 IVSETSDSFTFKTSDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHNLRVRYN 111
Query: 62 RDMIYSKAGPVLIAVNPFKAVPIYGNKFITAY--RQKVMDSPHVYAIADTAYNEMMGDGV 119
+D+IY+ +G L+AVNPFK +PIY + + + R++ +PH++AI+D AY M+ D
Sbjct: 112 QDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 171
Query: 120 NQSIIISGESGAGKTETAKFAMQYLAALGG-----GSEGIEYEILQTNHILEAFGNAKTS 174
NQS++I+GESGAGKTE K +QYLA++ G GS +E +ILQ N ILEAFGNAKT+
Sbjct: 172 NQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTT 231
Query: 175 RNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSF 234
RN+NSSRFGK IEI F+ G I GA IQ++LLEKSRVV + ER+YHIFYQL AGA +
Sbjct: 232 RNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAE 291
Query: 235 LKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAV 294
K+ L+L +NYLNQS C+ I GV D++ F +A+DIV +E++ F ++A +
Sbjct: 292 EKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGI 351
Query: 295 LWLGNISFQVIDNENHVEVIADE-AVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKL 353
L LGNI F+ E V+ D+ A+ A+ + G + L AL +I AG+D +A+ L
Sbjct: 352 LHLGNIKFEKGAGEG--AVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHL 409
Query: 354 TLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRS---INILDIYGFESFKKN 410
++++ SRDAL K +YG LF W+V++IN L C R I +LDI GFE FK N
Sbjct: 410 NVEKSSSSRDALVKALYGRLFLWLVKKINNVL-----CQERKAYFIGVLDISGFEIFKVN 464
Query: 411 SFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFE-DNEECLNLIE-KKPLG 468
SFEQ CINY NE+LQQ FN H+FKLEQEEY + ++WT ++F D++ ++LI+ ++P G
Sbjct: 465 SFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 524
Query: 469 VLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGERGR----AFSIRHYAGEVPYDTNG 524
+L+LLDE+S FP ATD T KL H + K E R F + HYAG+V Y+
Sbjct: 525 ILALLDEQSVFPNATDNTLITKLHSHFSKKNA-KYEEPRFSKTEFGVTHYAGQVMYEIQD 583
Query: 525 FLEKNRDPLQTDI-IQLLSSCTCQVLQLFXXXXXXXXXXXXXXXXXXXLDTQKQSVGTKF 583
+LEKN+DPLQ D+ + S V +LF +V ++
Sbjct: 584 WLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFI---------TVAAQY 634
Query: 584 KGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPT 643
K QL LM LE T PHF+RCI PN+KQLP E+ +VL Q RC GVLE +RI+R G+P
Sbjct: 635 KEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPN 694
Query: 644 RMRHQEFAGRYGVLLSE-KQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAAL 702
R+ + +F RY +L + ++D + AVL+ N+ PE ++ G TK++ R+GQLA +
Sbjct: 695 RIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQFRFGITKIFFRAGQLARI 754
Query: 703 EDRRK 707
E+ R+
Sbjct: 755 EEARE 759
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 571 bits (1471), Expect = e-163, Method: Compositional matrix adjust.
Identities = 313/696 (44%), Positives = 442/696 (63%), Gaps = 36/696 (5%)
Query: 31 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFI 90
NP +GV+D+ +LSYLNEP+V +N++ RY++D+IY+ +G L+AVNPFK +PIY + +
Sbjct: 81 NPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMV 140
Query: 91 TAY--RQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 148
+ R++ +PH++AI+D AY M+ D NQS++I+GESGAGKTE K +QYLA++
Sbjct: 141 DIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVA 200
Query: 149 G-----GSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQT 203
G GS +E +ILQ N ILEAFGNAKT+RN+NSSRFGK IEI F+ G I GA IQ+
Sbjct: 201 GRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQS 260
Query: 204 FLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDD 263
+LLEKSRVV + ER+YHIFYQL AGA + K+ L+L +NYLNQS C+ I GV D
Sbjct: 261 YLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSD 320
Query: 264 AQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADE-AVTTA 322
++ F +A+DIV +E++ F ++A +L LGNI F+ E V+ D+ A+ A
Sbjct: 321 SEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEG--AVLKDKTALNAA 378
Query: 323 AMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQIN 382
+ + G + L AL +I AG+D +A+ L ++++ SRDAL K +YG LF W+V++IN
Sbjct: 379 STVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKIN 438
Query: 383 KSLEVGKQCTGRS---INILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEE 439
L C R I +LDI GFE FK NSFEQ CINY NE+LQQ FN H+FK+EQEE
Sbjct: 439 NVL-----CQERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEE 493
Query: 440 YELDGVDWTRVEFE-DNEECLNLIE-KKPLGVLSLLDEESNFPKATDLTFANKLKQHLGS 497
Y + ++WT ++F D++ ++LI+ ++P G+L+LLDE+S FP ATD T KL H
Sbjct: 494 YLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSK 553
Query: 498 NSCFKGERGR----AFSIRHYAGEVPYDTNGFLEKNRDPLQTDI-IQLLSSCTCQVLQLF 552
+ K E R F + HYAG+V Y+ +LEKN+DPLQ D+ + S V +LF
Sbjct: 554 KNA-KYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 612
Query: 553 XXXXXXXXXXXXXXXXXXXLDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQL 612
+V ++K QL LM LE T PHF+RCI PN+KQL
Sbjct: 613 NDPNIASRAKKGANFI---------TVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQL 663
Query: 613 PGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE-KQLSQDPLSIS 671
P E+ +VL Q RC GVLE +RI+R G+P R+ + +F RY +L + ++D +
Sbjct: 664 PAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKAT 723
Query: 672 VAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRK 707
AVL+ N+ PE Y+ G TK++ R+GQLA +E+ R+
Sbjct: 724 DAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEARE 759
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 570 bits (1470), Expect = e-162, Method: Compositional matrix adjust.
Identities = 313/696 (44%), Positives = 443/696 (63%), Gaps = 36/696 (5%)
Query: 31 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFI 90
NP +GV+D+ +LSYLNEP+V +N++ RY++D+IY+ +G L+AVNPFK +PIY + +
Sbjct: 81 NPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMV 140
Query: 91 TAY--RQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 148
+ R++ +PH++AI+D AY M+ D NQS++I+GESGAGKTE K +QYLA++
Sbjct: 141 DIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVA 200
Query: 149 G-----GSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQT 203
G GS +E +ILQ N ILEAFGNAKT+RN+NSSRFGK IEI F++ G I GA IQ+
Sbjct: 201 GRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQS 260
Query: 204 FLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDD 263
+LLEKSRVV + ER+YHIFYQL AGA + K+ L+L +NYLNQS C+ I GV D
Sbjct: 261 YLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSD 320
Query: 264 AQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADE-AVTTA 322
++ F +A+DIV +E++ F ++A +L LGNI F+ E V+ D+ A+ A
Sbjct: 321 SEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEG--AVLKDKTALNAA 378
Query: 323 AMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQIN 382
+ + G + L AL +I AG+D +A+ L ++++ SRDAL K +YG LF W+V++IN
Sbjct: 379 STVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKIN 438
Query: 383 KSLEVGKQCTGRS---INILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEE 439
L C R I +LDI GFE FK NSFEQ CINY NE+LQQ FN H+FKLEQEE
Sbjct: 439 NVL-----CEERKAYFIGVLDIEGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEE 493
Query: 440 YELDGVDWTRVEFE-DNEECLNLIE-KKPLGVLSLLDEESNFPKATDLTFANKLKQHLGS 497
Y + ++WT ++F D++ ++LI+ ++P G+L+LLDE+S FP ATD T KL H
Sbjct: 494 YLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSK 553
Query: 498 NSCFKGERGR----AFSIRHYAGEVPYDTNGFLEKNRDPLQTDI-IQLLSSCTCQVLQLF 552
+ K E R F + HYAG+V Y+ +LEKN+DPLQ D+ + S V +LF
Sbjct: 554 KNA-KYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 612
Query: 553 XXXXXXXXXXXXXXXXXXXLDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQL 612
+V ++K QL LM LE T PHF+RCI PN+KQL
Sbjct: 613 NDPNIASRAKKGANFI---------TVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQL 663
Query: 613 PGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE-KQLSQDPLSIS 671
P E+ +VL Q RC GVLE +RI+R G+P R+ + +F RY +L + ++D +
Sbjct: 664 PAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKAT 723
Query: 672 VAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRK 707
AVL+ N+ PE ++ G TK++ R+GQLA +E+ R+
Sbjct: 724 DAVLKHLNIDPEQFRFGITKIFFRAGQLARIEEARE 759
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 570 bits (1469), Expect = e-162, Method: Compositional matrix adjust.
Identities = 313/696 (44%), Positives = 442/696 (63%), Gaps = 36/696 (5%)
Query: 31 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFI 90
NP +GV+D+ +LSYLNEP+V +N++ RY++D+IY+ +G L+AVNPFK +PIY + +
Sbjct: 80 NPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMV 139
Query: 91 TAY--RQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 148
+ R++ +PH++AI+D AY M+ D NQS++I+GESGAGKTE K +QYLA++
Sbjct: 140 DIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVA 199
Query: 149 G-----GSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQT 203
G GS +E +ILQ N ILEAFGNAKT+RN+NSSRFGK IEI F++ G I GA IQ+
Sbjct: 200 GRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQS 259
Query: 204 FLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDD 263
+LLEKSRVV + ER+YHIFYQL AGA + K+ L+L +NYLNQS C+ I GV D
Sbjct: 260 YLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSD 319
Query: 264 AQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADE-AVTTA 322
++ F +A+DIV +E++ F ++A +L LGNI F+ E V+ D+ A+ A
Sbjct: 320 SEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEG--AVLKDKTALNAA 377
Query: 323 AMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQIN 382
+ + G + L AL +I AG+D +A+ L ++++ SRDAL K +YG LF W+V++IN
Sbjct: 378 STVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKIN 437
Query: 383 KSLEVGKQCTGRS---INILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEE 439
L C R I +LDI GFE FK NSFEQ CINY NE+LQQ FN H+FKLEQEE
Sbjct: 438 NVL-----CQERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEE 492
Query: 440 YELDGVDWTRVEFE-DNEECLNLIE-KKPLGVLSLLDEESNFPKATDLTFANKLKQHLGS 497
Y + ++WT ++F D++ ++LI+ ++P G+L+LLDE+S FP ATD T KL H
Sbjct: 493 YLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSK 552
Query: 498 NSCFKGERGR----AFSIRHYAGEVPYDTNGFLEKNRDPLQTDI-IQLLSSCTCQVLQLF 552
+ K E R F + HYAG+V Y+ +LEKN+DPLQ D+ + S V +LF
Sbjct: 553 KNA-KYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 611
Query: 553 XXXXXXXXXXXXXXXXXXXLDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQL 612
+V ++K QL LM LE T PHF+RCI PN+KQL
Sbjct: 612 NDPNIASRAKKGANFI---------TVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQL 662
Query: 613 PGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE-KQLSQDPLSIS 671
P E+ +VL Q RC VLE +RI+R G+P R+ + +F RY +L + ++D +
Sbjct: 663 PAKLEDKVVLDQLRCNAVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKAT 722
Query: 672 VAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRK 707
AVL+ N+ PE Y+ G TK++ R+GQLA +E+ R+
Sbjct: 723 DAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEARE 758
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 570 bits (1468), Expect = e-162, Method: Compositional matrix adjust.
Identities = 318/725 (43%), Positives = 451/725 (62%), Gaps = 36/725 (4%)
Query: 2 IQSTSGDEAFVLLSNGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYS 61
I S + D S+G +V + NP +GV+D+ +LSYLNEP+V +N++ RY+
Sbjct: 52 IVSETSDSFTFKTSDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHNLRVRYN 111
Query: 62 RDMIYSKAGPVLIAVNPFKAVPIYGNKFITAY--RQKVMDSPHVYAIADTAYNEMMGDGV 119
+D+IY+ +G L+AVNPFK +PIY + + + R++ +PH++AI+D AY M+ D
Sbjct: 112 QDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 171
Query: 120 NQSIIISGESGAGKTETAKFAMQYLAALGG-----GSEGIEYEILQTNHILEAFGNAKTS 174
NQS++I+GESGAGKTE K +QYLA++ G GS +E +ILQ N ILEAFGNAKT+
Sbjct: 172 NQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTT 231
Query: 175 RNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSF 234
RN+NSSRFGK IEI F+ G I GA IQ++LLEKSRVV + ER+YHIFYQL AGA +
Sbjct: 232 RNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSTTERNYHIFYQLLAGATAE 291
Query: 235 LKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAV 294
K+ L+L +NYLNQS C+ I GV D + F +A+DIV +E++ F ++A +
Sbjct: 292 EKKALHLAGPESFNYLNQSGCVDIKGVSDEEEFKITRQAMDIVGFSQEEQMSIFKIIAGI 351
Query: 295 LWLGNISFQVIDNENHVEVIADE-AVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKL 353
L LGNI F+ E V+ D+ A+ A+ + G + L AL +I AG+D +A+ L
Sbjct: 352 LHLGNIKFEKGAGEG--AVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHL 409
Query: 354 TLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRS---INILDIYGFESFKKN 410
++++ SRDAL K +YG LF W+V++IN L C+ R I +LDI GFE FK N
Sbjct: 410 NVEKSSSSRDALVKALYGRLFLWLVKKINNVL-----CSERKAYFIGVLDISGFEIFKVN 464
Query: 411 SFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFE-DNEECLNLIE-KKPLG 468
SFEQ CINY NE+LQQ FN H+FK+EQEEY + ++WT ++F D++ ++LI+ ++P G
Sbjct: 465 SFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 524
Query: 469 VLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGERGR----AFSIRHYAGEVPYDTNG 524
+L+LLDE+S FP ATD T KL H + K E R F + HYAG+V Y+
Sbjct: 525 ILALLDEQSVFPNATDNTLITKLHSHFSKKNA-KYEEPRFSKTEFGVTHYAGQVMYEIQD 583
Query: 525 FLEKNRDPLQTDI-IQLLSSCTCQVLQLFXXXXXXXXXXXXXXXXXXXLDTQKQSVGTKF 583
+LEKN+DPLQ D+ + S V +LF +V ++
Sbjct: 584 WLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFI---------TVAAQY 634
Query: 584 KGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPT 643
K QL LM LE T PHF+RCI PN+KQLP E+ +VL Q RC GVLE +RI+R G+P
Sbjct: 635 KEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPN 694
Query: 644 RMRHQEFAGRYGVLLSE-KQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAAL 702
R+ + +F RY L + ++D + AVL+ N+ PE ++ G TK++ R+GQLA +
Sbjct: 695 RIIYADFVKRYYDLAPNVPRDAEDSQKATDAVLKHLNIDPEQFRFGITKIFFRAGQLARI 754
Query: 703 EDRRK 707
E+ R+
Sbjct: 755 EEARE 759
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 569 bits (1467), Expect = e-162, Method: Compositional matrix adjust.
Identities = 313/696 (44%), Positives = 442/696 (63%), Gaps = 36/696 (5%)
Query: 31 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFI 90
NP +GV+D+ +LSYLNEP+V +N++ RY++D+IY+ +G L+AVNPFK +PIY + +
Sbjct: 81 NPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMV 140
Query: 91 TAY--RQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 148
+ R++ +PH++AI+D AY M+ D NQS++I+GESGAGKTE K +QYLA++
Sbjct: 141 DIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVA 200
Query: 149 G-----GSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQT 203
G GS +E +ILQ N ILEAFGNAKT+RN+NSSRFGK IEI F+ G I GA IQ+
Sbjct: 201 GRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQS 260
Query: 204 FLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDD 263
+LLEKSRVV + ER+YHIFYQL AGA + K+ L+L +NYLNQS C+ I GV D
Sbjct: 261 YLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSD 320
Query: 264 AQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADE-AVTTA 322
F +A+DIV +E++ F ++A +L LGNI F+ E V+ D+ A+ A
Sbjct: 321 EDEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEG--AVLKDKTALNAA 378
Query: 323 AMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQIN 382
+ + G + L AL +I AG+D +A+ L ++++ SRDAL K +YG LF W+V++IN
Sbjct: 379 STVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKIN 438
Query: 383 KSLEVGKQCTGRS---INILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEE 439
L C+ R+ I +LDI GFE FK NSFEQ CINY NE+LQQ FN H+FK+EQEE
Sbjct: 439 NVL-----CSERAAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEE 493
Query: 440 YELDGVDWTRVEFE-DNEECLNLIE-KKPLGVLSLLDEESNFPKATDLTFANKLKQHLGS 497
Y + ++WT ++F D++ ++LI+ ++P G+L+LLDE+S FP ATD T KL H
Sbjct: 494 YLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSK 553
Query: 498 NSCFKGERGR----AFSIRHYAGEVPYDTNGFLEKNRDPLQTDI-IQLLSSCTCQVLQLF 552
+ K E R F + HYAG+V Y+ +LEKN+DPLQ D+ + S V +LF
Sbjct: 554 KNA-KYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 612
Query: 553 XXXXXXXXXXXXXXXXXXXLDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQL 612
+V ++K QL LM LE T PHF+RCI PN+KQL
Sbjct: 613 NDPNIASRAKKGANFI---------TVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQL 663
Query: 613 PGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE-KQLSQDPLSIS 671
P E+ +VL Q RC GVLE +RI+R G+P R+ + +F RY +L + ++D +
Sbjct: 664 PAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKAT 723
Query: 672 VAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRK 707
AVL+ N+ PE Y+ G TK++ R+GQLA +E+ R+
Sbjct: 724 DAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEARE 759
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 569 bits (1466), Expect = e-162, Method: Compositional matrix adjust.
Identities = 318/725 (43%), Positives = 450/725 (62%), Gaps = 36/725 (4%)
Query: 2 IQSTSGDEAFVLLSNGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYS 61
I S + D S+G +V + NP +GV+D+ +LSYLNEP+V +N++ RY+
Sbjct: 52 IVSETSDSFTFKTSDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHNLRVRYN 111
Query: 62 RDMIYSKAGPVLIAVNPFKAVPIYGNKFITAY--RQKVMDSPHVYAIADTAYNEMMGDGV 119
+D+IY+ +G L+AVNPFK +PIY + + + R++ +PH++AI+D AY M+ D
Sbjct: 112 QDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 171
Query: 120 NQSIIISGESGAGKTETAKFAMQYLAALGG-----GSEGIEYEILQTNHILEAFGNAKTS 174
NQS++I+GESGAGKTE K +QYLA++ G GS +E +ILQ N ILEAFGNAKT+
Sbjct: 172 NQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTT 231
Query: 175 RNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSF 234
RN+NSSRFGK IEI F+ G I GA IQ++LLEKSRVV + ER+YHIFYQL AGA +
Sbjct: 232 RNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSTTERNYHIFYQLLAGATAE 291
Query: 235 LKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAV 294
K+ L+L +NYLNQS C+ I GV D F +A+DIV +E++ F ++A +
Sbjct: 292 EKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVGFSQEEQMSIFKIIAGI 351
Query: 295 LWLGNISFQVIDNENHVEVIADE-AVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKL 353
L LGNI F+ E V+ D+ A+ A+ + G + L AL +I AG+D +A+ L
Sbjct: 352 LHLGNIKFEKGAGEG--AVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHL 409
Query: 354 TLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRS---INILDIYGFESFKKN 410
++++ SRDAL K +YG LF W+V++IN L C+ R I +LDI GFE FK N
Sbjct: 410 NVEKSSSSRDALVKALYGRLFLWLVKKINNVL-----CSERKAYFIGVLDISGFEIFKVN 464
Query: 411 SFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFE-DNEECLNLIE-KKPLG 468
SFEQ CINY NE+LQQ FN H+FK+EQEEY + ++WT ++F D++ ++LI+ ++P G
Sbjct: 465 SFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 524
Query: 469 VLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGERGR----AFSIRHYAGEVPYDTNG 524
+L+LLDE+S FP ATD T KL H + K E R F + HYAG+V Y+
Sbjct: 525 ILALLDEQSVFPNATDNTLITKLHSHFSKKNA-KYEEPRFSKTEFGVTHYAGQVMYEIQD 583
Query: 525 FLEKNRDPLQTDI-IQLLSSCTCQVLQLFXXXXXXXXXXXXXXXXXXXLDTQKQSVGTKF 583
+LEKN+DPLQ D+ + S V +LF +V ++
Sbjct: 584 WLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFL---------TVAAQY 634
Query: 584 KGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPT 643
K QL LM LE T PHF+RCI PN+KQLP E+ +VL Q RC GVLE +RI+R G+P
Sbjct: 635 KEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEAIRITRKGFPN 694
Query: 644 RMRHQEFAGRYGVLLSE-KQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAAL 702
R+ + +F RY L + ++D + AVL+ N+ PE ++ G TK++ R+GQLA +
Sbjct: 695 RIIYADFVKRYYDLAPNVPRDAEDSQKATDAVLKHLNIDPEQFRFGITKIFFRAGQLARI 754
Query: 703 EDRRK 707
E+ R+
Sbjct: 755 EEARE 759
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 569 bits (1466), Expect = e-162, Method: Compositional matrix adjust.
Identities = 313/696 (44%), Positives = 442/696 (63%), Gaps = 36/696 (5%)
Query: 31 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFI 90
NP +GV+D+ +LSYLNEP+V +N++ RY++D+IY+ +G L+AVNPFK +PIY + +
Sbjct: 80 NPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMV 139
Query: 91 TAY--RQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 148
+ R++ +PH++AI+D AY M+ D NQS++I+GESGAGKTE K +QYLA++
Sbjct: 140 DIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVA 199
Query: 149 G-----GSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQT 203
G GS +E +ILQ N ILEAFGNAKT+RN+NSSRFGK IEI F++ G I GA IQ+
Sbjct: 200 GRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQS 259
Query: 204 FLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDD 263
+LLEKSRVV + ER+YHIFYQL AGA + K+ L+L +NYLNQS C+ I GV D
Sbjct: 260 YLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSD 319
Query: 264 AQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADE-AVTTA 322
++ F +A+DIV +E++ F ++A +L LGNI F+ E V+ D+ A+ A
Sbjct: 320 SEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEG--AVLKDKTALNAA 377
Query: 323 AMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQIN 382
+ + G + L AL +I AG+D +A+ L ++++ SRDAL K +YG LF W+V++IN
Sbjct: 378 STVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKIN 437
Query: 383 KSLEVGKQCTGRS---INILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEE 439
L C R I +LDI GFE FK NSFEQ CINY NE+LQQ FN H+FKLEQEE
Sbjct: 438 NVL-----CQERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEE 492
Query: 440 YELDGVDWTRVEFE-DNEECLNLIE-KKPLGVLSLLDEESNFPKATDLTFANKLKQHLGS 497
Y + ++WT ++F D++ ++LI+ ++P G+L+LLDE+S FP ATD T KL H
Sbjct: 493 YLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSK 552
Query: 498 NSCFKGERGR----AFSIRHYAGEVPYDTNGFLEKNRDPLQTDI-IQLLSSCTCQVLQLF 552
+ K E R F + HYAG+V Y+ +LEKN+DPLQ D+ + S V +LF
Sbjct: 553 KNA-KYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 611
Query: 553 XXXXXXXXXXXXXXXXXXXLDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQL 612
+V ++K QL LM LE T PHF+RCI PN+KQL
Sbjct: 612 NDPNIASRAKKGANFI---------TVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQL 662
Query: 613 PGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE-KQLSQDPLSIS 671
P E+ +VL Q RC VLE +RI+R G+P R+ + +F RY +L + ++D +
Sbjct: 663 PAKLEDKVVLDQLRCNVVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKAT 722
Query: 672 VAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRK 707
AVL+ N+ PE Y+ G TK++ R+GQLA +E+ R+
Sbjct: 723 DAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEARE 758
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 566 bits (1460), Expect = e-161, Method: Compositional matrix adjust.
Identities = 317/725 (43%), Positives = 450/725 (62%), Gaps = 36/725 (4%)
Query: 2 IQSTSGDEAFVLLSNGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYS 61
I S + D S+G +V + NP +GV+D+ +LSYLNEP+V +N++ RY+
Sbjct: 52 IVSETSDSFTFKTSDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHNLRVRYN 111
Query: 62 RDMIYSKAGPVLIAVNPFKAVPIYGNKFITAY--RQKVMDSPHVYAIADTAYNEMMGDGV 119
+D+IY+ +G L+AVNPFK +PIY + + + R++ +PH++AI+D AY M+ D
Sbjct: 112 QDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 171
Query: 120 NQSIIISGESGAGKTETAKFAMQYLAALGG-----GSEGIEYEILQTNHILEAFGNAKTS 174
NQS++I+GESGAGKTE K +QYLA++ G GS +E +ILQ N ILEAFGNAKT+
Sbjct: 172 NQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTT 231
Query: 175 RNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSF 234
RN+NSSRFGK IEI F+ G I GA IQ++LLEKSRVV + ER+YHIFYQL AGA +
Sbjct: 232 RNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSTSERNYHIFYQLLAGATAE 291
Query: 235 LKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAV 294
K+ L+L +NYLNQS C+ I GV D F +A+DIV +E++ F ++A +
Sbjct: 292 EKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVGFSQEEQMSIFKIIAGI 351
Query: 295 LWLGNISFQVIDNENHVEVIADE-AVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKL 353
L LGNI F+ E V+ D+ A+ A+ + G + L AL +I AG+D +A+ L
Sbjct: 352 LHLGNIKFEKGAGEG--AVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHL 409
Query: 354 TLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRS---INILDIYGFESFKKN 410
++++ SRDAL K +YG LF W+V++IN L C+ R I +LDI GFE FK N
Sbjct: 410 NVEKSSSSRDALVKALYGRLFLWLVKKINNVL-----CSERKAYFIGVLDISGFEIFKVN 464
Query: 411 SFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFE-DNEECLNLIE-KKPLG 468
SFEQ CINY NE+LQQ FN H+FK+EQE+Y + ++WT ++F D++ ++LI+ ++P G
Sbjct: 465 SFEQLCINYTNEKLQQFFNHHMFKVEQEKYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 524
Query: 469 VLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGERGR----AFSIRHYAGEVPYDTNG 524
+L+LLDE+S FP ATD T KL H + K E R F + HYAG+V Y+
Sbjct: 525 ILALLDEQSVFPNATDNTLITKLHSHFSKKNA-KYEEPRFSKTEFGVTHYAGQVMYEIQD 583
Query: 525 FLEKNRDPLQTDI-IQLLSSCTCQVLQLFXXXXXXXXXXXXXXXXXXXLDTQKQSVGTKF 583
+LEKN+DPLQ D+ + S V +LF +V ++
Sbjct: 584 WLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFL---------TVAAQY 634
Query: 584 KGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPT 643
K QL LM LE T PHF+RCI PN+KQLP E+ +VL Q RC GVLE +RI+R G+P
Sbjct: 635 KEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPN 694
Query: 644 RMRHQEFAGRYGVLLSE-KQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAAL 702
R+ + +F RY L + ++D + AVL+ N+ PE ++ G TK++ R+GQLA +
Sbjct: 695 RIIYADFVKRYYDLAPNVPRDAEDSQKATDAVLKHLNIDPEQFRFGITKIFFRAGQLARI 754
Query: 703 EDRRK 707
E+ R+
Sbjct: 755 EEARE 759
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 557 bits (1435), Expect = e-158, Method: Compositional matrix adjust.
Identities = 314/713 (44%), Positives = 438/713 (61%), Gaps = 35/713 (4%)
Query: 24 TGELLPA-NPDILEGVDDLIQLSYLNEPSVLNNIQYRY-SRDMIYSKAGPVLIAVNPFKA 81
T EL P NPDIL G +DL LSYL+EP+VL+N++ R+ +IY+ G VL+A+NP++
Sbjct: 56 TKELPPLRNPDILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQ 115
Query: 82 VPIYGNKFITAYRQKVMDS--PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKF 139
+PIYG I AY + M PH++A+A+ AY +M D NQSII+SGESGAGKT +AK+
Sbjct: 116 LPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKY 175
Query: 140 AMQYLAALGGGSE--GIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKIC 197
AM+Y A + G + +E ++L +N I+E+ GNAKT+RNDNSSRFGK IEI F +I
Sbjct: 176 AMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRII 235
Query: 198 GAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGA--PSFLKERLNLKVANDYNYLNQSEC 255
GA ++T+LLEKSRVV A ER+YHIFYQLCA A P F + L L AN ++Y Q
Sbjct: 236 GANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEF--KTLRLGNANYFHYTKQGGS 293
Query: 256 LTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIA 315
IDG+DDA+ N +A ++ I + F +LA +L LGN+ F D+++
Sbjct: 294 PVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPK 353
Query: 316 DEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFD 375
+ +T LMG +E+ L K+ ++ K ++ AI++RDALAK IY +LF+
Sbjct: 354 HDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFN 413
Query: 376 WIVEQINKSLE-VGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFK 434
WIV+ +NK+L KQ + I +LDIYGFE+F+ NSFEQFCINYANE+LQQ FN H+FK
Sbjct: 414 WIVDHVNKALHSTVKQHS--FIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFK 471
Query: 435 LEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKL-KQ 493
LEQEEY + + WT ++F DN+ C+NLIE K +GVL LLDEE PK +D T+A KL
Sbjct: 472 LEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLYNT 530
Query: 494 HLGSNSCFKGER--GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLL-SSCTCQVL- 549
HL + F+ R +AF I+H+A +V Y GFLEKN+D + + I++L SS ++L
Sbjct: 531 HLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLP 590
Query: 550 QLFXXXXXXXXXXXXXXXXXXXLD----------------TQKQSVGTKFKGQLFKLMHQ 593
+LF L K++VG +F+ L LM
Sbjct: 591 ELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMET 650
Query: 594 LENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGR 653
L T PH++RCIKPN + P ++E +QQ R CGVLE +RIS +G+P+R +QEF R
Sbjct: 651 LNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSR 710
Query: 654 YGVLLSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 706
Y VL+ +K + D VL++ + + YQ G TK++ R+GQ+A LE R
Sbjct: 711 YRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIR 763
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 546 bits (1408), Expect = e-155, Method: Compositional matrix adjust.
Identities = 311/779 (39%), Positives = 454/779 (58%), Gaps = 39/779 (5%)
Query: 2 IQSTSGDEAFV-LLSNGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRY 60
IQS+ GDE V ++++ + V ++ NP E ++D+ ++YLNE SVL N++ RY
Sbjct: 43 IQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKFEKLEDMANMTYLNEASVLYNLRSRY 102
Query: 61 SRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYR--QKVMDSPHVYAIADTAYNEMMGDG 118
+ +IY+ +G IAVNP++ +PIY + I YR +K PH++++AD AY M+ D
Sbjct: 103 TSGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDR 162
Query: 119 VNQSIIISGESGAGKTETAKFAMQYLAALGGG-----------SEG-IEYEILQTNHILE 166
NQS +I+GESGAGKTE K + YLA + EG +E +I+Q N +LE
Sbjct: 163 ENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLE 222
Query: 167 AFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQ 226
A+GNAKT+RN+NSSRFGK I IHF GKI GA I+T+LLEKSRV + ER+YHIFYQ
Sbjct: 223 AYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQ 282
Query: 227 LCAGA-PSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDRE 285
+C+ A P L + Y+++NQ CLT+D +DD + F EA DI+ KE+++
Sbjct: 283 ICSNAIPELNDVMLVTPDSGLYSFINQG-CLTVDNIDDVEEFKLCDEAFDILGFTKEEKQ 341
Query: 286 QTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAG 345
F A++L +G + F+ E E A L G ++ +L+ AL K++ G
Sbjct: 342 SMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVG 401
Query: 346 KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFE 405
+ + K + Q ++S ALAK +Y +F+W+V ++NK+L+ K I +LDI GFE
Sbjct: 402 TEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDT-KAKRNYYIGVLDIAGFE 460
Query: 406 SFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFE-DNEECLNLIEK 464
F NSFEQ CINY NERLQQ FN H+F LEQEEY+ +G+ W ++F D + C++LIE
Sbjct: 461 IFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE- 519
Query: 465 KPLGVLSLLDEESNFPKATDLTFANKLKQ-HLGSNSCF-------KGERGRA-FSIRHYA 515
KP+G+LS+L+EE FPKA D +F +KL Q H+G N F + +G A F + HYA
Sbjct: 520 KPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYA 579
Query: 516 GEVPYDTNGFLEKNRDPLQTDIIQLL-SSCTCQVLQLFXXXXXXXXXXXXXXXXXXXLDT 574
G VPY G+LEKN+DP+ +++ LL +S V +LF
Sbjct: 580 GNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEEPAGGGKKKKGKSSAF-- 637
Query: 575 QKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIV 634
Q++ + L KLM L +T PHF+RCI PN + PG+ + +LVL Q +C GVLE +
Sbjct: 638 --QTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGI 695
Query: 635 RISRSGYPTRMRHQEFAGRYGVLLSE--KQLSQDPLSISVAVLQQFNVLPEMYQVGYTKL 692
RI R G+P+R+ + EF RY +L Q D ++S +L + P Y++G TK+
Sbjct: 696 RICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKV 755
Query: 693 YLRSGQLAALEDRRKQVLQAIIRL-QKCFRGYQARSRFRELCNGVITLQSFARGENTRR 750
+ ++G L LE+ R + L II + Q RGY R +++L + I L R N R+
Sbjct: 756 FFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQR--NIRK 812
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 765 EIRDEQLREIICL-QSAIRGWLVRKQLKMHKLKQSNPVNAKVKRRSGRK 812
E+RDE+L +II + Q+ IRG+L+RK K KL Q + V +R+ RK
Sbjct: 767 EMRDERLSKIISMFQAHIRGYLIRKAYK--KL-QDQRIGLSVIQRNIRK 812
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 546 bits (1407), Expect = e-155, Method: Compositional matrix adjust.
Identities = 311/779 (39%), Positives = 454/779 (58%), Gaps = 39/779 (5%)
Query: 2 IQSTSGDEAFV-LLSNGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRY 60
IQS+ GDE V ++++ + V ++ NP E ++D+ ++YLNE SVL N++ RY
Sbjct: 44 IQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKFEKLEDMANMTYLNEASVLYNLRSRY 103
Query: 61 SRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYR--QKVMDSPHVYAIADTAYNEMMGDG 118
+ +IY+ +G IAVNP++ +PIY + I YR +K PH++++AD AY M+ D
Sbjct: 104 TSGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDR 163
Query: 119 VNQSIIISGESGAGKTETAKFAMQYLAALGGG-----------SEG-IEYEILQTNHILE 166
NQS +I+GESGAGKTE K + YLA + EG +E +I+Q N +LE
Sbjct: 164 ENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLE 223
Query: 167 AFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQ 226
A+GNAKT+RN+NSSRFGK I IHF GKI GA I+T+LLEKSRV + ER+YHIFYQ
Sbjct: 224 AYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQ 283
Query: 227 LCAGA-PSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDRE 285
+C+ A P L + Y+++NQ CLT+D +DD + F EA DI+ KE+++
Sbjct: 284 ICSNAIPELNDVMLVTPDSGLYSFINQG-CLTVDNIDDVEEFKLCDEAFDILGFTKEEKQ 342
Query: 286 QTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAG 345
F A++L +G + F+ E E A L G ++ +L+ AL K++ G
Sbjct: 343 SMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVG 402
Query: 346 KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFE 405
+ + K + Q ++S ALAK +Y +F+W+V ++NK+L+ K I +LDI GFE
Sbjct: 403 TEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDT-KAKRNYYIGVLDIAGFE 461
Query: 406 SFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFE-DNEECLNLIEK 464
F NSFEQ CINY NERLQQ FN H+F LEQEEY+ +G+ W ++F D + C++LIE
Sbjct: 462 IFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE- 520
Query: 465 KPLGVLSLLDEESNFPKATDLTFANKLKQ-HLGSNSCF-------KGERGRA-FSIRHYA 515
KP+G+LS+L+EE FPKA D +F +KL Q H+G N F + +G A F + HYA
Sbjct: 521 KPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYA 580
Query: 516 GEVPYDTNGFLEKNRDPLQTDIIQLL-SSCTCQVLQLFXXXXXXXXXXXXXXXXXXXLDT 574
G VPY G+LEKN+DP+ +++ LL +S V +LF
Sbjct: 581 GNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEEPAGGGKKKKGKSSAF-- 638
Query: 575 QKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIV 634
Q++ + L KLM L +T PHF+RCI PN + PG+ + +LVL Q +C GVLE +
Sbjct: 639 --QTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGI 696
Query: 635 RISRSGYPTRMRHQEFAGRYGVLLSE--KQLSQDPLSISVAVLQQFNVLPEMYQVGYTKL 692
RI R G+P+R+ + EF RY +L Q D ++S +L + P Y++G TK+
Sbjct: 697 RICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKV 756
Query: 693 YLRSGQLAALEDRRKQVLQAIIRL-QKCFRGYQARSRFRELCNGVITLQSFARGENTRR 750
+ ++G L LE+ R + L II + Q RGY R +++L + I L R N R+
Sbjct: 757 FFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQR--NIRK 813
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 765 EIRDEQLREIICL-QSAIRGWLVRKQLKMHKLKQSNPVNAKVKRRSGRK 812
E+RDE+L +II + Q+ IRG+L+RK K KL Q + V +R+ RK
Sbjct: 768 EMRDERLSKIISMFQAHIRGYLIRKAYK--KL-QDQRIGLSVIQRNIRK 813
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 546 bits (1407), Expect = e-155, Method: Compositional matrix adjust.
Identities = 311/779 (39%), Positives = 454/779 (58%), Gaps = 39/779 (5%)
Query: 2 IQSTSGDEAFV-LLSNGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRY 60
IQS+ GDE V ++++ + V ++ NP E ++D+ ++YLNE SVL N++ RY
Sbjct: 48 IQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKFEKLEDMANMTYLNEASVLYNLRSRY 107
Query: 61 SRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYR--QKVMDSPHVYAIADTAYNEMMGDG 118
+ +IY+ +G IAVNP++ +PIY + I YR +K PH++++AD AY M+ D
Sbjct: 108 TSGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDR 167
Query: 119 VNQSIIISGESGAGKTETAKFAMQYLAALGGG-----------SEG-IEYEILQTNHILE 166
NQS +I+GESGAGKTE K + YLA + EG +E +I+Q N +LE
Sbjct: 168 ENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLE 227
Query: 167 AFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQ 226
A+GNAKT+RN+NSSRFGK I IHF GKI GA I+T+LLEKSRV + ER+YHIFYQ
Sbjct: 228 AYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQ 287
Query: 227 LCAGA-PSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDRE 285
+C+ A P L + Y+++NQ CLT+D +DD + F EA DI+ KE+++
Sbjct: 288 ICSNAIPELNDVMLVTPDSGLYSFINQG-CLTVDNIDDVEEFKLCDEAFDILGFTKEEKQ 346
Query: 286 QTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAG 345
F A++L +G + F+ E E A L G ++ +L+ AL K++ G
Sbjct: 347 SMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVG 406
Query: 346 KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFE 405
+ + K + Q ++S ALAK +Y +F+W+V ++NK+L+ K I +LDI GFE
Sbjct: 407 TEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDT-KAKRNYYIGVLDIAGFE 465
Query: 406 SFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFE-DNEECLNLIEK 464
F NSFEQ CINY NERLQQ FN H+F LEQEEY+ +G+ W ++F D + C++LIE
Sbjct: 466 IFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE- 524
Query: 465 KPLGVLSLLDEESNFPKATDLTFANKLKQ-HLGSNSCF-------KGERGRA-FSIRHYA 515
KP+G+LS+L+EE FPKA D +F +KL Q H+G N F + +G A F + HYA
Sbjct: 525 KPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYA 584
Query: 516 GEVPYDTNGFLEKNRDPLQTDIIQLL-SSCTCQVLQLFXXXXXXXXXXXXXXXXXXXLDT 574
G VPY G+LEKN+DP+ +++ LL +S V +LF
Sbjct: 585 GNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEEPAGGGKKKKGKSSAF-- 642
Query: 575 QKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIV 634
Q++ + L KLM L +T PHF+RCI PN + PG+ + +LVL Q +C GVLE +
Sbjct: 643 --QTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGI 700
Query: 635 RISRSGYPTRMRHQEFAGRYGVLLSE--KQLSQDPLSISVAVLQQFNVLPEMYQVGYTKL 692
RI R G+P+R+ + EF RY +L Q D ++S +L + P Y++G TK+
Sbjct: 701 RICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKV 760
Query: 693 YLRSGQLAALEDRRKQVLQAIIRL-QKCFRGYQARSRFRELCNGVITLQSFARGENTRR 750
+ ++G L LE+ R + L II + Q RGY R +++L + I L R N R+
Sbjct: 761 FFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQR--NIRK 817
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 765 EIRDEQLREIICL-QSAIRGWLVRKQLKMHKLKQSNPVNAKVKRRSGRK 812
E+RDE+L +II + Q+ IRG+L+RK K KL Q + V +R+ RK
Sbjct: 772 EMRDERLSKIISMFQAHIRGYLIRKAYK--KL-QDQRIGLSVIQRNIRK 817
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 546 bits (1406), Expect = e-155, Method: Compositional matrix adjust.
Identities = 311/779 (39%), Positives = 454/779 (58%), Gaps = 39/779 (5%)
Query: 2 IQSTSGDEAFV-LLSNGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRY 60
IQS+ GDE V ++++ + V ++ NP E ++D+ ++YLNE SVL N++ RY
Sbjct: 48 IQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKFEKLEDMANMTYLNEASVLYNLRSRY 107
Query: 61 SRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYR--QKVMDSPHVYAIADTAYNEMMGDG 118
+ +IY+ +G IAVNP++ +PIY + I YR +K PH++++AD AY M+ D
Sbjct: 108 TSGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDR 167
Query: 119 VNQSIIISGESGAGKTETAKFAMQYLAALGGG-----------SEG-IEYEILQTNHILE 166
NQS +I+GESGAGKTE K + YLA + EG +E +I+Q N +LE
Sbjct: 168 ENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLE 227
Query: 167 AFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQ 226
A+GNAKT+RN+NSSRFGK I IHF GKI GA I+T+LLEKSRV + ER+YHIFYQ
Sbjct: 228 AYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQ 287
Query: 227 LCAGA-PSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDRE 285
+C+ A P L + Y+++NQ CLT+D +DD + F EA DI+ KE+++
Sbjct: 288 ICSNAIPELNDVMLVTPDSGLYSFINQG-CLTVDNIDDVEEFKLCDEAFDILGFTKEEKQ 346
Query: 286 QTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAG 345
F A++L +G + F+ E E A L G ++ +L+ AL K++ G
Sbjct: 347 SMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVG 406
Query: 346 KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFE 405
+ + K + Q ++S ALAK +Y +F+W+V ++NK+L+ K I +LDI GFE
Sbjct: 407 TEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDT-KAKRNYYIGVLDIAGFE 465
Query: 406 SFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEF-EDNEECLNLIEK 464
F NSFEQ CINY NERLQQ FN H+F LEQEEY+ +G+ W ++F D + C++LIE
Sbjct: 466 IFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE- 524
Query: 465 KPLGVLSLLDEESNFPKATDLTFANKLKQ-HLGSNSCF-------KGERGRA-FSIRHYA 515
KP+G+LS+L+EE FPKA D +F +KL Q H+G N F + +G A F + HYA
Sbjct: 525 KPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYA 584
Query: 516 GEVPYDTNGFLEKNRDPLQTDIIQLL-SSCTCQVLQLFXXXXXXXXXXXXXXXXXXXLDT 574
G VPY G+LEKN+DP+ +++ LL +S V +LF
Sbjct: 585 GNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEEPAGGGKKKKGKSSAF-- 642
Query: 575 QKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIV 634
Q++ + L KLM L +T PHF+RCI PN + PG+ + +LVL Q +C GVLE +
Sbjct: 643 --QTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGI 700
Query: 635 RISRSGYPTRMRHQEFAGRYGVLLSE--KQLSQDPLSISVAVLQQFNVLPEMYQVGYTKL 692
RI R G+P+R+ + EF RY +L Q D ++S +L + P Y++G TK+
Sbjct: 701 RICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKV 760
Query: 693 YLRSGQLAALEDRRKQVLQAIIRL-QKCFRGYQARSRFRELCNGVITLQSFARGENTRR 750
+ ++G L LE+ R + L II + Q RGY R +++L + I L R N R+
Sbjct: 761 FFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQR--NIRK 817
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 765 EIRDEQLREIICL-QSAIRGWLVRKQLKMHKLKQSNPVNAKVKRRSGRK 812
E+RDE+L +II + Q+ IRG+L+RK K KL Q + V +R+ RK
Sbjct: 772 EMRDERLSKIISMFQAHIRGYLIRKAYK--KL-QDQRIGLSVIQRNIRK 817
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 545 bits (1405), Expect = e-155, Method: Compositional matrix adjust.
Identities = 311/779 (39%), Positives = 454/779 (58%), Gaps = 39/779 (5%)
Query: 2 IQSTSGDEAFV-LLSNGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRY 60
IQS+ GDE V ++++ + V ++ NP E ++D+ ++YLNE SVL N++ RY
Sbjct: 48 IQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKFEKLEDMANMTYLNEASVLYNLRSRY 107
Query: 61 SRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYR--QKVMDSPHVYAIADTAYNEMMGDG 118
+ +IY+ +G IAVNP++ +PIY + I YR +K PH++++AD AY M+ D
Sbjct: 108 TSGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDR 167
Query: 119 VNQSIIISGESGAGKTETAKFAMQYLAALGGG-----------SEG-IEYEILQTNHILE 166
NQS +I+GESGAGKTE K + YLA + EG +E +I+Q N +LE
Sbjct: 168 ENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLE 227
Query: 167 AFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQ 226
A+GNAKT+RN+NSSRFGK I IHF GKI GA I+T+LLEKSRV + ER+YHIFYQ
Sbjct: 228 AYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQ 287
Query: 227 LCAGA-PSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDRE 285
+C+ A P L + Y+++NQ CLT+D +DD + F EA DI+ KE+++
Sbjct: 288 ICSNAIPELNDVMLVTPDSGLYSFINQG-CLTVDNIDDVEEFKLCDEAFDILGFTKEEKQ 346
Query: 286 QTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAG 345
F A++L +G + F+ E E A L G ++ +L+ AL K++ G
Sbjct: 347 SMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVG 406
Query: 346 KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFE 405
+ + K + Q ++S ALAK +Y +F+W+V ++NK+L+ K I +LDI GFE
Sbjct: 407 TEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDT-KAKRNYYIGVLDIAGFE 465
Query: 406 SFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEF-EDNEECLNLIEK 464
F NSFEQ CINY NERLQQ FN H+F LEQEEY+ +G+ W ++F D + C++LIE
Sbjct: 466 IFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE- 524
Query: 465 KPLGVLSLLDEESNFPKATDLTFANKLKQ-HLGSNSCF-------KGERGRA-FSIRHYA 515
KP+G+LS+L+EE FPKA D +F +KL Q H+G N F + +G A F + HYA
Sbjct: 525 KPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYA 584
Query: 516 GEVPYDTNGFLEKNRDPLQTDIIQLL-SSCTCQVLQLFXXXXXXXXXXXXXXXXXXXLDT 574
G VPY G+LEKN+DP+ +++ LL +S V +LF
Sbjct: 585 GNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEEPAGGGKKKKGKSSAF-- 642
Query: 575 QKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIV 634
Q++ + L KLM L +T PHF+RCI PN + PG+ + +LVL Q +C GVLE +
Sbjct: 643 --QTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGI 700
Query: 635 RISRSGYPTRMRHQEFAGRYGVLLSE--KQLSQDPLSISVAVLQQFNVLPEMYQVGYTKL 692
RI R G+P+R+ + EF RY +L Q D ++S +L + P Y++G TK+
Sbjct: 701 RICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKV 760
Query: 693 YLRSGQLAALEDRRKQVLQAIIRL-QKCFRGYQARSRFRELCNGVITLQSFARGENTRR 750
+ ++G L LE+ R + L II + Q RGY R +++L + I L R N R+
Sbjct: 761 FFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQR--NIRK 817
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 765 EIRDEQLREIICL-QSAIRGWLVRKQLKMHKLKQSNPVNAKVKRRSGRK 812
E+RDE+L +II + Q+ IRG+L+RK K KL Q + V +R+ RK
Sbjct: 772 EMRDERLSKIISMFQAHIRGYLIRKAYK--KL-QDQRIGLSVIQRNIRK 817
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 539 bits (1389), Expect = e-153, Method: Compositional matrix adjust.
Identities = 305/775 (39%), Positives = 453/775 (58%), Gaps = 38/775 (4%)
Query: 2 IQSTSGDEAFV-LLSNGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRY 60
IQS+ G+E V ++S+ + V ++ NP E ++D+ ++YLNE SVLNN++ RY
Sbjct: 48 IQSSKGEEITVKIVSDNSTRTVKKDDIQQMNPPKFEKLEDMANMTYLNEASVLNNLRGRY 107
Query: 61 SRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYR--QKVMDSPHVYAIADTAYNEMMGDG 118
+ +IY+ +G IAVNP++ +PIY + I YR +K PH++++AD AY M+ D
Sbjct: 108 TAGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDR 167
Query: 119 VNQSIIISGESGAGKTETAKFAMQYLAALGGGSE--------------GIEYEILQTNHI 164
NQS +I+GESGAGKTE K + YLA + + +E +I+Q N +
Sbjct: 168 ENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKTSEEEEADQKKGSLEDQIIQANPV 227
Query: 165 LEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIF 224
LEA+GNAKT+RN+NSSRFGK I IHF GKI GA I+T+LLEKSRV + ER+YHIF
Sbjct: 228 LEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIF 287
Query: 225 YQLCAGAPSFLKERLNLKVAND-YNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKED 283
YQ+C+ A L E + + + Y+++NQ CLT+D +DD + F EA DI+ KE+
Sbjct: 288 YQICSNAIPELNEVMLITPDSGLYSFINQG-CLTVDNIDDVEEFKLCDEAFDILGFTKEE 346
Query: 284 REQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQ 343
+ F A++L +G + F+ E E A L G ++ +L+ AL K++
Sbjct: 347 KTSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVK 406
Query: 344 AGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYG 403
G + + K LQQ I+S AL+K +Y +F+W+V+++N++L+ K I +LDI G
Sbjct: 407 VGTEMVTKGQNLQQVINSVGALSKSLYDRMFNWLVKRVNRTLDT-KAKRNYYIGVLDIAG 465
Query: 404 FESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFE-DNEECLNLI 462
FE F NSFEQ CINY NERLQQ FN H+F LEQEEY+ +G+ W ++F D + C++LI
Sbjct: 466 FEIFDFNSFEQLCINYTNERLQQFFNHHMFVLEQEEYKKEGIQWEFIDFGMDLQMCIDLI 525
Query: 463 EKKPLGVLSLLDEESNFPKATDLTFAN-KLKQHLGSNSCF-------KGERGRA-FSIRH 513
E KP+G+LS+L+EE FPKA D +F + + H+G N F + +G A F + H
Sbjct: 526 E-KPMGILSILEEECMFPKADDKSFQDYSYQNHIGKNRMFTKPGKPTRPNQGHAHFELHH 584
Query: 514 YAGEVPYDTNGFLEKNRDPLQTDIIQLLS-SCTCQVLQLFXXXXXXXXXXXXXXXXXXXL 572
YAG VPY G+L+KN+DP+ +++ LL+ S V +LF
Sbjct: 585 YAGNVPYSIAGWLDKNKDPINENVVSLLAVSKEPLVAELFRAPDEPAGGAGGKKKKKS-- 642
Query: 573 DTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLE 632
+ Q++ + L KLM L +T PHF+RCI PN + PG+ + +LVL Q +C GVLE
Sbjct: 643 -SAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLE 701
Query: 633 IVRISRSGYPTRMRHQEFAGRYGVLLSE--KQLSQDPLSISVAVLQQFNVLPEMYQVGYT 690
+RI R G+P+R+ + EF RY +L Q D ++S +L + P Y++G T
Sbjct: 702 GIRICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVDGKTVSEKILTGLQMDPSEYRLGTT 761
Query: 691 KLYLRSGQLAALEDRRKQVLQAIIRL-QKCFRGYQARSRFRELCNGVITLQSFAR 744
K++ ++G L LE+ R + L II + Q RGY R +++L + I L R
Sbjct: 762 KVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQR 816
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 765 EIRDEQLREIICL-QSAIRGWLVRKQLKMHKLKQSNPVNAKVKRRSGRK 812
E+RDE+L +II + Q+ IRG+L+RK K KL Q + V +R+ RK
Sbjct: 775 EMRDERLSKIISMFQAHIRGYLIRKAYK--KL-QDQRIGLSVIQRNIRK 820
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 538 bits (1386), Expect = e-153, Method: Compositional matrix adjust.
Identities = 305/760 (40%), Positives = 433/760 (56%), Gaps = 32/760 (4%)
Query: 2 IQSTSGDEAFVLLSNGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYS 61
IQS G + V G + V ++ NP + ++D+ +++L+EP+VL N++ RY+
Sbjct: 49 IQSKEGGKVTVKTEGGETLTVKEDQVFSMNPPKYDKIEDMAMMTHLHEPAVLYNLKERYA 108
Query: 62 RDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGV 119
MIY+ +G + VNP+K +P+Y K + AYR K PH+++I+D AY M+ D
Sbjct: 109 AWMIYTYSGLFCVTVNPYKWLPVYNPKVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRE 168
Query: 120 NQSIIISGESGAGKTETAKFAMQYLAALGGGSE------------GIEYEILQTNHILEA 167
NQSI+I+GESGAGKT K +QY A + E +E +I+ N +LEA
Sbjct: 169 NQSILITGESGAGKTVNTKRVIQYFATIAASGEKKKEEQSGKMQGTLEDQIISANPLLEA 228
Query: 168 FGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQL 227
FGNAKT RNDNSSRFGK I IHF A GK+ A I+T+LLEKSRV ERSYHIFYQ+
Sbjct: 229 FGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVTFQLPAERSYHIFYQI 288
Query: 228 CAG-APSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQ 286
+ P + L DY+Y++Q E +T+ +DD + A+DI+ +++
Sbjct: 289 MSNKKPELIDMLLITTNPYDYHYVSQGE-ITVPSIDDQEELMATDSAIDILGFSADEKTA 347
Query: 287 TFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGK 346
+ + AV+ GN+ F+ E E E AA LMG +S EL+ AL +++ G
Sbjct: 348 IYKLTGAVMHYGNLKFKQKQREEQAEPDGTEVADKAAYLMGLNSAELLKALCYPRVKVGN 407
Query: 347 DSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFES 406
+ + K T+ Q +S ALAK +Y +F W+V +IN+ L+ KQ I +LDI GFE
Sbjct: 408 EFVTKGQTVSQVHNSVGALAKAVYEKMFLWMVIRINQQLDT-KQPRQYFIGVLDIAGFEI 466
Query: 407 FKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEF-EDNEECLNLIEKK 465
F NSFEQ CIN+ NE+LQQ FN H+F LEQEEY+ +G++W ++F D C+ LIE K
Sbjct: 467 FDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIE-K 525
Query: 466 PLGVLSLLDEESNFPKATDLTFANKL-KQHLGSNSCF---KGERGRA---FSIRHYAGEV 518
P+G+ S+L+EE FPKATD +F NKL QHLG ++ F K +G+A FS+ HYAG V
Sbjct: 526 PMGIFSILEEECMFPKATDTSFKNKLYDQHLGKSNNFQKPKPAKGKAEAHFSLVHYAGTV 585
Query: 519 PYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFXXXXXXXXXXXXXXXXXXXLDTQKQS 578
Y+ +G+LEKN+DPL +I L + + L L + Q+
Sbjct: 586 DYNISGWLEKNKDPLNETVIGLYQKSSVKTLALLFATYGGEAEGGGGKKGGKKKGSSFQT 645
Query: 579 VGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISR 638
V F+ L KLM L +T PHF+RCI PN + PG E +LVL Q RC GVLE +RI R
Sbjct: 646 VSALFRENLNKLMANLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLEGIRICR 705
Query: 639 SGYPTRMRHQEFAGRYGVL----LSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYL 694
G+P+R+ + +F RY VL + E Q D S +L +V Y+ G+TK++
Sbjct: 706 KGFPSRVLYADFKQRYRVLNASAIPEGQF-MDSKKASEKLLGSIDVDHTQYRFGHTKVFF 764
Query: 695 RSGQLAALEDRRKQVLQAII-RLQKCFRGYQARSRFRELC 733
++G L LE+ R L II R Q RG+ R +R +
Sbjct: 765 KAGLLGLLEEMRDDKLAEIITRTQARCRGFLMRVEYRRMV 804
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 537 bits (1384), Expect = e-152, Method: Compositional matrix adjust.
Identities = 304/774 (39%), Positives = 452/774 (58%), Gaps = 37/774 (4%)
Query: 2 IQSTSGDEAFV-LLSNGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRY 60
IQS+ G+E V ++S+ + V ++ NP E ++D+ ++YLNE SVLNN++ RY
Sbjct: 48 IQSSKGEEITVKIVSDNSTRTVKKDDIQQMNPPKFEKLEDMANMTYLNEASVLNNLRGRY 107
Query: 61 SRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYR--QKVMDSPHVYAIADTAYNEMMGDG 118
+ +IY+ +G IAVNP++ +PIY + I YR +K PH++++AD AY M+ D
Sbjct: 108 TAGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDR 167
Query: 119 VNQSIIISGESGAGKTETAKFAMQYLAALGGG-------------SEGIEYEILQTNHIL 165
NQS +I+GESGAGKTE+ K + Y A + + +E +I++ N +L
Sbjct: 168 ENQSCLITGESGAGKTESTKKVIMYFARVAANLYKQKEEPVPNLRASNLEDQIIEANPVL 227
Query: 166 EAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFY 225
EAFGNAKT RN+NSSRFGK I IHF GKI GA I+T+LLEKSRV + ER+YHIFY
Sbjct: 228 EAFGNAKTVRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFY 287
Query: 226 QLCAGAPSFLKERLNLKVAND-YNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDR 284
Q+C+ A L E + + + Y+++NQ CLT+D +DD + F EA DI+ KE++
Sbjct: 288 QICSNAIPELNEVMLITPDSGLYSFINQG-CLTVDNIDDVEEFKLCDEAFDILGFTKEEK 346
Query: 285 EQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQA 344
F A++L +G + F+ E E A L G ++ +L+ AL K++
Sbjct: 347 TSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKV 406
Query: 345 GKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGF 404
G + + K LQQ I+S AL+K +Y +F+W+V+++N++L+ K I +LDI GF
Sbjct: 407 GTEMVTKGQNLQQVINSVGALSKSLYDRMFNWLVKRVNRTLDT-KAKRNYYIGVLDIAGF 465
Query: 405 ESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEF-EDNEECLNLIE 463
E F NSFEQ CINY NERLQQ FN H+F LEQEEY+ +G+ W ++F D + C++LIE
Sbjct: 466 EIFDFNSFEQLCINYTNERLQQFFNHHMFVLEQEEYKKEGIQWEFIDFGMDLQMCIDLIE 525
Query: 464 KKPLGVLSLLDEESNFPKATDLTFAN-KLKQHLGSNSCF-------KGERGRA-FSIRHY 514
KP+G+LS+L+EE FPKA D +F + + H+G N F + +G A F + HY
Sbjct: 526 -KPMGILSILEEECMFPKADDKSFQDYSYQNHIGKNRMFTKPGKPTRPNQGHAHFELHHY 584
Query: 515 AGEVPYDTNGFLEKNRDPLQTDIIQLLS-SCTCQVLQLFXXXXXXXXXXXXXXXXXXXLD 573
AG VPY G+L+KN+DP+ +++ LL+ S V +LF
Sbjct: 585 AGNVPYSIAGWLDKNKDPINENVVSLLAVSKEPLVAELFRAPDEPAGGAGGKKKKKS--- 641
Query: 574 TQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEI 633
+ Q++ + L KLM L T PHF+RCI PN ++ PG+ + +LVL Q +C GVLE
Sbjct: 642 SAFQTISAVHRESLNKLMCNLRRTNPHFVRCIIPNLEKDPGLVDAELVLHQLQCNGVLEG 701
Query: 634 VRISRSGYPTRMRHQEFAGRYGVLLSE--KQLSQDPLSISVAVLQQFNVLPEMYQVGYTK 691
+RI R G+P+R+ + EF RY +L Q D ++S +L + P Y++G TK
Sbjct: 702 IRICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVDGKTVSEKILTGLQMDPSEYRLGTTK 761
Query: 692 LYLRSGQLAALEDRRKQVLQAIIRL-QKCFRGYQARSRFRELCNGVITLQSFAR 744
++ ++G L LE+ R + L II + Q RGY R +++L + I L R
Sbjct: 762 VFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQR 815
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 765 EIRDEQLREIICL-QSAIRGWLVRKQLKMHKLKQSNPVNAKVKRRSGRK 812
E+RDE+L +II + Q+ IRG+L+RK K KL Q + V +R+ RK
Sbjct: 774 EMRDERLSKIISMFQAHIRGYLIRKAYK--KL-QDQRIGLSVIQRNIRK 819
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 534 bits (1376), Expect = e-152, Method: Compositional matrix adjust.
Identities = 292/630 (46%), Positives = 404/630 (64%), Gaps = 35/630 (5%)
Query: 31 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFI 90
NP +GV+D+ +LSYLNEP+V +N++ RY++D+IY+ +G L+AVNPFK +PIY + +
Sbjct: 80 NPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMV 139
Query: 91 TAY--RQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 148
+ R++ +PH++AI+D AY M+ D NQS++I+GESGAGKTE K +QYLA++
Sbjct: 140 DIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVA 199
Query: 149 G-----GSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQT 203
G GS +E +ILQ N ILEAFGNAKT+RN+NSSRFGK IEI F++ G I GA IQ+
Sbjct: 200 GRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQS 259
Query: 204 FLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDD 263
+LLEKSRVV + ER+YHIFYQL AGA + K+ L+L +NYLNQS C+ I GV D
Sbjct: 260 YLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSD 319
Query: 264 AQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADE-AVTTA 322
++ F +A+DIV +E++ F ++A +L LGNI F+ E V+ D+ A+ A
Sbjct: 320 SEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEG--AVLKDKTALNAA 377
Query: 323 AMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQIN 382
+ + G + L AL +I AG+D +A+ L ++++ SRDAL K +YG LF W+V++IN
Sbjct: 378 STVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKIN 437
Query: 383 KSLEVGKQCTGRS---INILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEE 439
L C R I +LDIYGFE FK NSFEQ CINY NE+LQQ FN H+FKLEQEE
Sbjct: 438 NVL-----CQERKAYFIGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEE 492
Query: 440 YELDGVDWTRVEFE-DNEECLNLIE-KKPLGVLSLLDEESNFPKATDLTFANKLKQHLGS 497
Y + ++WT ++F D++ ++LI+ ++P G+L+LLDE+S FP ATD T KL H
Sbjct: 493 YLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSK 552
Query: 498 NSCFKGERGR----AFSIRHYAGEVPYDTNGFLEKNRDPLQTDI-IQLLSSCTCQVLQLF 552
+ K E R F + HYAG+V Y+ +LEKN+DPLQ D+ + S V +LF
Sbjct: 553 KNA-KYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 611
Query: 553 XXXXXXXXXXXXXXXXXXXLDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQL 612
+V ++K QL LM LE T PHF+RCI PN+KQL
Sbjct: 612 NDPNIASRAKKGANFI---------TVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQL 662
Query: 613 PGIYEEDLVLQQFRCCGVLEIVRISRSGYP 642
P E+ +VL Q RC GVLE +RI+R G+P
Sbjct: 663 PAKLEDKVVLDQLRCNGVLEGIRITRKGFP 692
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 533 bits (1372), Expect = e-151, Method: Compositional matrix adjust.
Identities = 292/633 (46%), Positives = 404/633 (63%), Gaps = 35/633 (5%)
Query: 31 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFI 90
NP +GV+D+ +LSYLNEP+V +N++ RY++D+IY+ +G L+AVNPFK +PIY + +
Sbjct: 80 NPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKIIPIYTQEMV 139
Query: 91 TAY--RQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 148
+ R++ +PH++AI+D AY M+ D NQS++I+GESGAGKTE K +QYLA++
Sbjct: 140 DIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVA 199
Query: 149 G-----GSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQT 203
G GS +E +ILQ N ILEAFGNAKT+RN+NSSRFGK IEI F++ G I GA IQ+
Sbjct: 200 GRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQS 259
Query: 204 FLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDD 263
+LLEKSRVV + ER+YHIFYQL AGA + K+ L+L +NYLNQS C+ I GV D
Sbjct: 260 YLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSD 319
Query: 264 AQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADE-AVTTA 322
++ F +A+DIV +E++ F ++A +L LGNI F+ E V+ D+ A+ A
Sbjct: 320 SEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEG--AVLKDKTALNAA 377
Query: 323 AMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQIN 382
+ + G + L AL +I AG+D +A+ L ++++ SRDAL K +YG LF W+V +IN
Sbjct: 378 STVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVIKIN 437
Query: 383 KSLEVGKQCTGRS---INILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEE 439
L C R I +LDI GFE FK NSFEQ CINY NE+LQQ FN H+FKLEQEE
Sbjct: 438 NVL-----CQERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEE 492
Query: 440 YELDGVDWTRVEFE-DNEECLNLIE-KKPLGVLSLLDEESNFPKATDLTFANKLKQHLGS 497
Y + ++WT ++F D++ ++LI+ ++P G+L+LLDE+S FP ATD T KL H
Sbjct: 493 YLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSK 552
Query: 498 NSCFKGERGR----AFSIRHYAGEVPYDTNGFLEKNRDPLQTDI-IQLLSSCTCQVLQLF 552
+ K E R F + HYAG+V Y+ +LEKN+DPLQ D+ + S V +LF
Sbjct: 553 KNA-KYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 611
Query: 553 XXXXXXXXXXXXXXXXXXXLDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQL 612
+V ++K QL LM LE T PHF+RCI PN+KQL
Sbjct: 612 NDPNIASRAKKGANFI---------TVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQL 662
Query: 613 PGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRM 645
P E+ +VL Q RC GVLE +RI+R G+P R+
Sbjct: 663 PAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRI 695
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 526 bits (1356), Expect = e-149, Method: Compositional matrix adjust.
Identities = 340/930 (36%), Positives = 500/930 (53%), Gaps = 101/930 (10%)
Query: 2 IQSTSGDEAFV-LLSNGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRY 60
I+ GDE V L NG V +S ++ NP V+D+ +L+ LNE SVL+N++ RY
Sbjct: 48 IKEEKGDEVTVELQENGKKVTLSKDDIQKMNPPKFSKVEDMAELTCLNEASVLHNLRERY 107
Query: 61 SRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMDS--PHVYAIADTAYNEMMGDG 118
+IY+ +G + +NP+K +PIY K I Y+ K PH+YAIADTAY M+ D
Sbjct: 108 FSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDR 167
Query: 119 VNQSIIISGESGAGKTETAKFAMQYLAALGGGSEG----------------IEYEILQTN 162
+QSI+ +GESGAGKTE K +QYLA + +G +E ++LQ N
Sbjct: 168 EDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQAN 227
Query: 163 HILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYH 222
ILEAFGNAKT +NDNSSRFGK I I+F G I GA I+T+LLEKSR ++ A ER++H
Sbjct: 228 PILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFH 287
Query: 223 IFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKE 282
IFY L AGA ++ L L+ N+Y +L+ + I D + F +EA+ I+ +E
Sbjct: 288 IFYYLIAGASEQMRNDLLLEGFNNYTFLSNGH-VPIPAQQDDEMFQETLEAMTIMGFTEE 346
Query: 283 DREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKI 342
++ ++++VL LGNI F+ N + + + A LMG + + ++ T +I
Sbjct: 347 EQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRI 406
Query: 343 QAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIY 402
+ G+D + K T +QA + +ALAK + LF WI+ ++NK+L+ K+ + ILDI
Sbjct: 407 KVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIA 466
Query: 403 GFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFE-DNEECLNL 461
GFE F+ NSFEQ CINY NE+LQQ FN +F LEQEEY+ +G++W ++F D + C+ L
Sbjct: 467 GFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIEL 526
Query: 462 IEK--KPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER----GRAFSIRHYA 515
IE+ P GVL+LLDEE FPKATD +F KL Q G+++ F+ + F I HYA
Sbjct: 527 IERPTNPPGVLALLDEECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYA 586
Query: 516 GEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQ-VLQLFXXXXXXXXXXXXXXXXXXXL-- 572
G+V Y+ + +L KN DPL ++ LL+ + + V L+ L
Sbjct: 587 GKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDRIVGLDQMAKMTESSLPS 646
Query: 573 --DTQK---QSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRC 627
T+K ++VG +K QL KLM L NT P+F+RCI PN ++ G + LVL+Q RC
Sbjct: 647 ASKTKKGMFRTVGQLYKEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRC 706
Query: 628 CGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEK--QLSQDPLSISVAVLQQFNVLPEMY 685
GVLE +RI R G+P R+ QEF RY +L + + D + +++ + P +Y
Sbjct: 707 NGVLEGIRICRQGFPNRIVFQEFRQRYEILAANAIPKGFMDGKQACILMIKALELDPNLY 766
Query: 686 QVGYTKLYLRSGQLAALEDRRK-QVLQAIIRLQKCFRGYQARSRFRELCNGVITLQSFAR 744
++G +K++ R+G LA LE+ R ++ II Q RGY AR ++FA+
Sbjct: 767 RIGQSKIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLAR-------------KAFAK 813
Query: 745 GENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWL-VRKQLKMHKLKQSNPVNA 803
R +QL I C+Q +R ++ V M P+
Sbjct: 814 ----------------------RQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPL-L 850
Query: 804 KVKRRSGRKSSDMKDVPQEQVQALPTALAELQRRVLKAEATLGQKE-------EENAALR 856
KV R+ +E++QA L + R KAEA L + E EE L+
Sbjct: 851 KVTRQ------------EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ 898
Query: 857 EQLQQYDAKWLEYE-------AKMKSMEEM 879
E+LQ + E E AK + +EE+
Sbjct: 899 EKLQAETELYAEAEEMRVRLAAKKQELEEI 928
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 524 bits (1350), Expect = e-148, Method: Compositional matrix adjust.
Identities = 303/765 (39%), Positives = 442/765 (57%), Gaps = 38/765 (4%)
Query: 2 IQSTSGDEAFV-LLSNGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRY 60
I+ GDE V L NG V +S ++ NP V+D+ +L+ LNE SVL+N++ RY
Sbjct: 48 IKEEKGDEVTVELQENGKKVTLSKDDIQKMNPPKFSKVEDMAELTCLNEASVLHNLRERY 107
Query: 61 SRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMDS--PHVYAIADTAYNEMMGDG 118
+IY+ +G + +NP+K +PIY K I Y+ K PH+YAIADTAY M+ D
Sbjct: 108 FSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDR 167
Query: 119 VNQSIIISGESGAGKTETAKFAMQYLAALGGGSEG----------------IEYEILQTN 162
+QSI+ +GESGAGKTE K +QYLA + +G +E ++LQ N
Sbjct: 168 EDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQAN 227
Query: 163 HILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYH 222
ILEAFGNAKT +NDNSSRFGK I I+F G I GA I+T+LLEKSR ++ A ER++H
Sbjct: 228 PILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFH 287
Query: 223 IFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKE 282
IFY L AGA ++ L L+ N+Y +L+ + I D + F +EA+ I+ +E
Sbjct: 288 IFYYLIAGASEQMRNDLLLEGFNNYTFLSNGH-VPIPAQQDDEMFQETLEAMTIMGFTEE 346
Query: 283 DREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKI 342
++ ++++VL LGNI F+ N + + + A LMG + + ++ T +I
Sbjct: 347 EQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRI 406
Query: 343 QAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIY 402
+ G+D + K T +QA + +ALAK + LF WI+ ++NK+L+ K+ + ILDI
Sbjct: 407 KVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIA 466
Query: 403 GFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFE-DNEECLNL 461
GFE F+ NSFEQ CINY NE+LQQ FN +F LEQEEY+ +G++W ++F D + C+ L
Sbjct: 467 GFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIEL 526
Query: 462 IEK--KPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER----GRAFSIRHYA 515
IE+ P GVL+LLDEE FPKATD +F KL Q G+++ F+ + F I HYA
Sbjct: 527 IERPTNPPGVLALLDEECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYA 586
Query: 516 GEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQ-VLQLFXXXXXXXXXXXXXXXXXXXL-- 572
G+V Y+ + +L KN DPL ++ LL+ + + V L+ L
Sbjct: 587 GKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDRIVGLDQMAKMTESSLPS 646
Query: 573 --DTQK---QSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRC 627
T+K ++VG +K QL KLM L NT P+F+RCI PN ++ G + LVL+Q RC
Sbjct: 647 ASKTKKGMFRTVGQLYKEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRC 706
Query: 628 CGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE--KQLSQDPLSISVAVLQQFNVLPEMY 685
GVLE +RI R G+P R+ QEF RY +L + + D + +++ + P +Y
Sbjct: 707 NGVLEGIRICRQGFPNRIVFQEFRQRYEILAANAIPKGFMDGKQACILMIKALELDPNLY 766
Query: 686 QVGYTKLYLRSGQLAALEDRRK-QVLQAIIRLQKCFRGYQARSRF 729
++G +K++ R+G LA LE+ R ++ II Q RGY AR F
Sbjct: 767 RIGQSKIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAF 811
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 523 bits (1348), Expect = e-148, Method: Compositional matrix adjust.
Identities = 303/765 (39%), Positives = 442/765 (57%), Gaps = 38/765 (4%)
Query: 2 IQSTSGDEAFV-LLSNGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRY 60
I+ GDE V L NG V +S ++ NP V+D+ +L+ LNE SVL+N++ RY
Sbjct: 48 IKEEKGDEVTVELQENGKKVTLSKDDIQKMNPPKFSKVEDMAELTCLNEASVLHNLRERY 107
Query: 61 SRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMDS--PHVYAIADTAYNEMMGDG 118
+IY+ +G + +NP+K +PIY K I Y+ K PH+YAIADTAY M+ D
Sbjct: 108 FSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDR 167
Query: 119 VNQSIIISGESGAGKTETAKFAMQYLAALGGGSEG----------------IEYEILQTN 162
+QSI+ +GESGAGKTE K +QYLA + +G +E ++LQ N
Sbjct: 168 EDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQAN 227
Query: 163 HILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYH 222
ILEAFGNAKT +NDNSSRFGK I I+F G I GA I+T+LLEKSR ++ A ER++H
Sbjct: 228 PILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFH 287
Query: 223 IFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKE 282
IFY L AGA ++ L L+ N+Y +L+ + I D + F +EA+ I+ +E
Sbjct: 288 IFYYLIAGASEQMRNDLLLEGFNNYTFLSNGH-VPIPAQQDDEMFQETLEAMTIMGFTEE 346
Query: 283 DREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKI 342
++ ++++VL LGNI F+ N + + + A LMG + + ++ T +I
Sbjct: 347 EQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRI 406
Query: 343 QAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIY 402
+ G+D + K T +QA + +ALAK + LF WI+ ++NK+L+ K+ + ILDI
Sbjct: 407 KVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIA 466
Query: 403 GFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFE-DNEECLNL 461
GFE F+ NSFEQ CINY NE+LQQ FN +F LEQEEY+ +G++W ++F D + C+ L
Sbjct: 467 GFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIEL 526
Query: 462 IEK--KPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER----GRAFSIRHYA 515
IE+ P GVL+LLDEE FPKATD +F KL Q G+++ F+ + F I HYA
Sbjct: 527 IERPTNPPGVLALLDEECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYA 586
Query: 516 GEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQ-VLQLFXXXXXXXXXXXXXXXXXXXL-- 572
G+V Y+ + +L KN DPL ++ LL+ + + V L+ L
Sbjct: 587 GKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDRIVGLDQMAKMTESSLPS 646
Query: 573 --DTQK---QSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRC 627
T+K ++VG +K QL KLM L NT P+F+RCI PN ++ G + LVL+Q RC
Sbjct: 647 ASKTKKGMFRTVGQLYKEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRC 706
Query: 628 CGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEK--QLSQDPLSISVAVLQQFNVLPEMY 685
GVLE +RI R G+P R+ QEF RY +L + + D + +++ + P +Y
Sbjct: 707 NGVLEGIRICRQGFPNRIVFQEFRQRYEILAANAIPKGFMDGKQACILMIKALELDPNLY 766
Query: 686 QVGYTKLYLRSGQLAALEDRRK-QVLQAIIRLQKCFRGYQARSRF 729
++G +K++ R+G LA LE+ R ++ II Q RGY AR F
Sbjct: 767 RIGQSKIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAF 811
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 522 bits (1345), Expect = e-148, Method: Compositional matrix adjust.
Identities = 301/765 (39%), Positives = 440/765 (57%), Gaps = 38/765 (4%)
Query: 2 IQSTSGDEAFV-LLSNGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRY 60
I+ GDE V L NG V +S ++ NP V+D+ +L+ LNE SVL+N++ RY
Sbjct: 48 IKEEKGDEVTVELQENGKKVTLSKDDIQKMNPPKFSKVEDMAELTCLNEASVLHNLRERY 107
Query: 61 SRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMDS--PHVYAIADTAYNEMMGDG 118
+IY+ +G + +NP+K +PIY K I Y+ K PH+YAIADTAY M+ D
Sbjct: 108 FSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDR 167
Query: 119 VNQSIIISGESGAGKTETAKFAMQYLAALGGGSEG----------------IEYEILQTN 162
+QSI+ +GESGAGKTE K +QYLA + +G +E ++LQ N
Sbjct: 168 EDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQAN 227
Query: 163 HILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYH 222
ILEAFGNAKT +NDNSSRFGK I I+F G I GA I+T+LLEKSR ++ A ER++H
Sbjct: 228 PILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFH 287
Query: 223 IFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKE 282
IFY L AGA ++ L L+ N+Y +L+ + I D + F +EA+ I+ +E
Sbjct: 288 IFYYLIAGASEQMRNDLLLEGFNNYTFLSNGH-VPIPAQQDDEMFQETLEAMTIMGFTEE 346
Query: 283 DREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKI 342
++ ++++VL LGNI F+ N + + + A LMG + + ++ T +I
Sbjct: 347 EQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRI 406
Query: 343 QAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIY 402
+ G+D + K T +QA + +ALAK + LF WI+ ++NK+L+ K+ + ILDI
Sbjct: 407 KVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIA 466
Query: 403 GFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFE-DNEECLNL 461
GFE F+ NSFEQ CINY NE+LQQ FN +F LEQEEY+ +G++W ++F D + C+ L
Sbjct: 467 GFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIEL 526
Query: 462 IEK--KPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER----GRAFSIRHYA 515
IE+ P GVL+LLDEE FPKATD +F KL Q G+++ F+ + F I HYA
Sbjct: 527 IERPTNPPGVLALLDEECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYA 586
Query: 516 GEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQ-VLQLFXXXXXXXXXXXXXXXXXXXLDT 574
G+V Y+ + +L KN DPL ++ LL+ + + V L+ L +
Sbjct: 587 GKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDRIVGLDQMAKMTESSLPS 646
Query: 575 QKQ-------SVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRC 627
+ +VG +K QL KLM L NT P+F+RCI PN ++ G + LVL+Q RC
Sbjct: 647 ASKTKKGMFRTVGQLYKEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRC 706
Query: 628 CGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE--KQLSQDPLSISVAVLQQFNVLPEMY 685
GVLE +RI R G+P R+ QEF RY +L + + D + +++ + P +Y
Sbjct: 707 NGVLEGIRICRQGFPNRIVFQEFRQRYEILAANAIPKGFMDGKQACILMIKALELDPNLY 766
Query: 686 QVGYTKLYLRSGQLAALEDRRK-QVLQAIIRLQKCFRGYQARSRF 729
++G +K++ R+G LA LE+ R ++ II Q RGY AR F
Sbjct: 767 RIGQSKIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAF 811
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 520 bits (1339), Expect = e-147, Method: Compositional matrix adjust.
Identities = 301/765 (39%), Positives = 440/765 (57%), Gaps = 38/765 (4%)
Query: 2 IQSTSGDEAFV-LLSNGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRY 60
I+ GDE V L NG V +S ++ NP V+D+ +L+ LNE SVL+N++ RY
Sbjct: 48 IKEEKGDEVTVELQENGKKVTLSKDDIQKMNPPKFSKVEDMAELTCLNEASVLHNLRERY 107
Query: 61 SRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMDS--PHVYAIADTAYNEMMGDG 118
+IY+ +G + +NP+K +PIY K I Y+ K PH+YAIADTAY M+ D
Sbjct: 108 FSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDR 167
Query: 119 VNQSIIISGESGAGKTETAKFAMQYLAALGGGSEG----------------IEYEILQTN 162
+QSI+ +GESGAGKTE K +QYLA + +G +E ++LQ N
Sbjct: 168 EDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQAN 227
Query: 163 HILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYH 222
ILEAFGNAKT +NDNSSRFGK I I+F G I GA I+T+LLEKSR ++ A ER++H
Sbjct: 228 PILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFH 287
Query: 223 IFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKE 282
IFY L AGA ++ L L+ N+Y +L+ + I D + F +EA+ I+ +E
Sbjct: 288 IFYYLIAGASEQMRNDLLLEGFNNYTFLSNGH-VPIPAQQDDEMFQETLEAMTIMGFTEE 346
Query: 283 DREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKI 342
++ ++++VL LGNI F+ N + + + A LMG + + ++ T +I
Sbjct: 347 EQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRI 406
Query: 343 QAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIY 402
+ G+D + K T +QA + +ALAK + LF WI+ ++NK+L+ K+ + ILDI
Sbjct: 407 KVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIA 466
Query: 403 GFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFE-DNEECLNL 461
GFE F+ NSFEQ CINY NE+LQQ FN +F LEQEEY+ +G++W ++F D + C+ L
Sbjct: 467 GFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIEL 526
Query: 462 IEK--KPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER----GRAFSIRHYA 515
IE+ P GVL+LLDEE FPKATD +F KL Q G+++ F+ + F I HYA
Sbjct: 527 IERPTNPPGVLALLDEECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYA 586
Query: 516 GEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQ-VLQLFXXXXXXXXXXXXXXXXXXXLDT 574
G+V Y+ + +L KN DPL ++ LL+ + + V L+ L +
Sbjct: 587 GKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDRIVGLDQMAKMTESSLPS 646
Query: 575 QKQ-------SVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRC 627
+ +VG +K QL KLM L NT P+F+RCI PN ++ G + LVL+Q RC
Sbjct: 647 ASKTKKGMFRTVGQLYKEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRC 706
Query: 628 CGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE--KQLSQDPLSISVAVLQQFNVLPEMY 685
GVLE +RI R G+P R+ QEF RY +L + + D + +++ + P +Y
Sbjct: 707 NGVLEGIRICRQGFPNRIVFQEFRQRYEILAANAIPKGFMDGKQACILMIKALELDPNLY 766
Query: 686 QVGYTKLYLRSGQLAALEDRRK-QVLQAIIRLQKCFRGYQARSRF 729
++G +K++ R+G LA LE+ R ++ II Q RGY AR F
Sbjct: 767 RIGQSKIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAF 811
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 514 bits (1325), Expect = e-146, Method: Compositional matrix adjust.
Identities = 284/735 (38%), Positives = 418/735 (56%), Gaps = 30/735 (4%)
Query: 2 IQSTSGDEAFVLLSNGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYS 61
I S G + G V V +++ NP + ++D+ L++L+EP+VL N++ RY
Sbjct: 51 IVSREGGKVTAETEYGKTVTVKEDQVMQQNPPKFDKIEDMAMLTFLHEPAVLYNLKDRYG 110
Query: 62 RDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGV 119
MIY+ +G + VNP+K +P+Y + + AYR K PH+++I+D AY M+ D
Sbjct: 111 SWMIYTYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRE 170
Query: 120 NQSIIISGESGAGKTETAKFAMQYLAALGG-----------GSEGIEYEILQTNHILEAF 168
NQSI+I+GESGAGKT K +QY A + G +E +I+Q N LEAF
Sbjct: 171 NQSILITGESGAGKTVNTKRVIQYFAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAF 230
Query: 169 GNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLC 228
GNAKT RNDNSSRFGK I IHF A GK+ A I+T+LLEKSRV+ ER YHIFYQ+
Sbjct: 231 GNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVIFQLKAERDYHIFYQIL 290
Query: 229 AGA-PSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQT 287
+ P L L DY +++Q E T+ +DDA+ A D++ E++
Sbjct: 291 SNKKPELLDMLLITNNPYDYAFISQGET-TVASIDDAEELMATDNAFDVLGFTSEEKNSM 349
Query: 288 FAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKD 347
+ + A++ GN+ F++ E E E +A LMG +S +L+ L +++ G +
Sbjct: 350 YKLTGAIMHFGNMKFKLKQREEQAEPDGTEEADKSAYLMGLNSADLLKGLCHPRVKVGNE 409
Query: 348 SIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESF 407
+ K +QQ I + ALAK +Y +F+W+V +IN +LE KQ I +LDI GFE F
Sbjct: 410 YVTKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLET-KQPRQYFIGVLDIAGFEIF 468
Query: 408 KKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFE-DNEECLNLIEKKP 466
NSFEQ CIN+ NE+LQQ FN H+F LEQEEY+ +G++WT ++F D + C++LIE KP
Sbjct: 469 DFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE-KP 527
Query: 467 LGVLSLLDEESNFPKATDLTFANKL-KQHLGSNSCF------KGERGRAFSIRHYAGEVP 519
+G++S+L+EE FPKATD+TF KL HLG ++ F KG+ FS+ HYAG V
Sbjct: 528 MGIMSILEEECMFPKATDMTFKAKLFDNHLGKSANFQKPRNIKGKPEAHFSLIHYAGIVD 587
Query: 520 YDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFXXXXXXXXXXXXXXXXXXXLDTQKQSV 579
Y+ G+L+KN+DPL ++ L + ++L + Q+V
Sbjct: 588 YNIIGWLQKNKDPLNETVVGLYQKSSLKLLSTLFANYAGADAPIEKGKGKAKKGSSFQTV 647
Query: 580 GTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRS 639
+ L KLM L +T PHF+RCI PN + PG+ + LV+ Q RC GVLE +RI R
Sbjct: 648 SALHRENLNKLMTNLRSTHPHFVRCIIPNETKSPGVMDNPLVMHQLRCNGVLEGIRICRK 707
Query: 640 GYPTRMRHQEFAGRYGVL----LSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLR 695
G+P R+ + +F RY +L + E Q D + +L ++ Y+ G+TK++ +
Sbjct: 708 GFPNRILYGDFRQRYRILNPAAIPEGQFI-DSRKGAEKLLSSLDIDHNQYKFGHTKVFFK 766
Query: 696 SGQLAALEDRRKQVL 710
+G L LE+ R + L
Sbjct: 767 AGLLGLLEEMRDERL 781
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 509 bits (1310), Expect = e-144, Method: Compositional matrix adjust.
Identities = 292/741 (39%), Positives = 429/741 (57%), Gaps = 37/741 (4%)
Query: 2 IQSTSGDEAFV-LLSNGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRY 60
I+ GDE V L NG V +S ++ NP V+D+ +L+ LNE SVL+N++ RY
Sbjct: 48 IKEEKGDEVTVELQENGKKVTLSKDDIQKMNPPKFSKVEDMAELTCLNEASVLHNLRERY 107
Query: 61 SRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMDS--PHVYAIADTAYNEMMGDG 118
+IY+ +G + +NP+K +PIY K I Y+ K PH+YAIADTAY M+ D
Sbjct: 108 FSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDR 167
Query: 119 VNQSIIISGESGAGKTETAKFAMQYLAALGGGSEG----------------IEYEILQTN 162
+QSI+ +GESGAGKTE K +QYLA + +G +E ++LQ N
Sbjct: 168 EDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQAN 227
Query: 163 HILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYH 222
ILEAFGNAKT +NDNSSRFGK I I+F G I GA I+T+LLEKSR ++ A ER++H
Sbjct: 228 PILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFH 287
Query: 223 IFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKE 282
IFY L AGA ++ L L+ N+Y +L+ + I D + F +EA+ I+ +E
Sbjct: 288 IFYYLIAGASEQMRNDLLLEGFNNYTFLSNGH-VPIPAQQDDEMFQETLEAMTIMGFTEE 346
Query: 283 DREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKI 342
++ ++++VL LGNI F+ N + + + A LMG + + ++ T +I
Sbjct: 347 EQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRI 406
Query: 343 QAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIY 402
+ G+D + K T +QA + +ALAK + LF WI+ ++NK+L+ K+ + ILDI
Sbjct: 407 KVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIA 466
Query: 403 GFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFE-DNEECLNL 461
GFE F+ NSFEQ CINY NE+LQQ FN +F LEQEEY+ +G++W ++F D + C+ L
Sbjct: 467 GFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIEL 526
Query: 462 IEK--KPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER----GRAFSIRHYA 515
IE+ P GVL+LLDEE FPKATD +F KL Q G+++ F+ + F I HYA
Sbjct: 527 IERPTNPPGVLALLDEECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYA 586
Query: 516 GEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQ-VLQLFXXXXXXXXXXXXXXXXXXXLDT 574
G+V Y+ + +L KN DPL ++ LL+ + + V L+ L +
Sbjct: 587 GKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDRIVGLDQMAKMTESSLPS 646
Query: 575 QKQ-------SVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRC 627
+ +VG +K QL KLM L NT P+F+RCI PN ++ G + LVL+Q RC
Sbjct: 647 ASKTKKGMFRTVGQLYKEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRC 706
Query: 628 CGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE--KQLSQDPLSISVAVLQQFNVLPEMY 685
GVLE +RI R G+P R+ QEF RY +L + + D + +++ + P +Y
Sbjct: 707 NGVLEGIRICRQGFPNRIVFQEFRQRYEILAANAIPKGFMDGKQACILMIKALELDPNLY 766
Query: 686 QVGYTKLYLRSGQLAALEDRR 706
++G +K++ R+G LA LE+ R
Sbjct: 767 RIGQSKIFFRTGVLAHLEEER 787
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 499 bits (1285), Expect = e-141, Method: Compositional matrix adjust.
Identities = 299/783 (38%), Positives = 436/783 (55%), Gaps = 45/783 (5%)
Query: 2 IQSTSGDEAFVLLSNGNVVKV-STGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRY 60
IQST GDE V +V ++ NP E D+ L++LNE S+L+N++ RY
Sbjct: 48 IQSTKGDEVTVKTDKTQETRVVKKDDIGQRNPPKFEMNMDMANLTFLNEASILHNLRSRY 107
Query: 61 SRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQK--VMDSPHVYAIADTAYNEMMGDG 118
IY+ +G IA+NP++ +PIY + YR K PH+++IAD AY M+ D
Sbjct: 108 ESGFIYTYSGLFCIAINPYRRLPIYTQGLVDKYRGKRRAEMPPHLFSIADNAYQYMLQDR 167
Query: 119 VNQSIIISGESGAGKTETAKFAMQYLAALGGGSEG-----------------IEYEILQT 161
NQS++I+GESGAGKTE K +QY A + G +E +I+Q
Sbjct: 168 ENQSMLITGESGAGKTENTKKVIQYFALVAASLAGKKDKKEEEKKKDEKKGTLEDQIVQC 227
Query: 162 NHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSY 221
N +LEA+GNAKT+RN+NSSRFGK I IHF GKI GA I+T+LLEKSRV + ER+Y
Sbjct: 228 NPVLEAYGNAKTTRNNNSSRFGKFIRIHFGTQGKIAGADIETYLLEKSRVTYQQSAERNY 287
Query: 222 HIFYQLCAGA-PSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIR 280
HIFYQL + A P +++ L + Y ++NQ LT+DG+DD + A D++
Sbjct: 288 HIFYQLLSPAFPENIEKILAVPDPGLYGFINQG-TLTVDGIDDEEEMGLTDTAFDVLGFT 346
Query: 281 KEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTH 340
E++ + +L LG + ++ + + A+ A L+G ++ +L+ L
Sbjct: 347 DEEKLSMYKCTGCILHLGEMKWKQRGEQAEADGTAE--AEKVAFLLGVNAGDLLKCLLKP 404
Query: 341 KIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILD 400
KI+ G + + + Q +S ALAK +Y +F+W+V ++N++L+ K I +LD
Sbjct: 405 KIKVGTEYVTQGRNKDQVTNSIAALAKSLYDRMFNWLVRRVNQTLDT-KAKRQFFIGVLD 463
Query: 401 IYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFE-DNEECL 459
I GFE F NSFEQ CINY NERLQQ FN H+F LEQEEY+ +G+ W ++F D + C+
Sbjct: 464 IAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFVLEQEEYKKEGIVWEFIDFGLDLQACI 523
Query: 460 NLIEKKPLGVLSLLDEESNFPKATDLTFANKL-KQHLGSNSCF-KGERGRA------FSI 511
LIE KP+G+LS+L+EE FPKA+D +F NKL HLG N F K + +A F +
Sbjct: 524 ELIE-KPMGILSILEEECMFPKASDTSFKNKLYDNHLGKNPMFGKPKPPKAGCAEAHFCL 582
Query: 512 RHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQ-LFXXXXXXXXXXXXXXXXXX 570
HYAG V Y G+L+KN+DP+ ++++LL + +++ LF
Sbjct: 583 HHYAGSVSYSIAGWLDKNKDPINENVVELLQNSKEPIVKMLFTPPRILTPGGKKKKGKSA 642
Query: 571 XLDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGV 630
Q++ + K L KLM L +T PHF+RCI PN + PG+ + LVL Q RC GV
Sbjct: 643 AF----QTISSVHKESLNKLMKNLYSTHPHFVRCIIPNELKTPGLIDAALVLHQLRCNGV 698
Query: 631 LEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLS--QDPLSISVAVLQQFNVLPEMYQVG 688
LE +RI R G+P R+ + EF RY +L S D ++ L + P Y++G
Sbjct: 699 LEGIRICRKGFPNRIIYSEFKQRYSILAPNAVPSGFADGKVVTDKALSALQLDPNEYRLG 758
Query: 689 YTKLYLRSGQLAALEDRRKQVLQAIIRL-QKCFRGYQARSRFRELCNGVITLQSFARGEN 747
TK++ ++G L LED R + L II + Q RGY R +++L + I L R N
Sbjct: 759 NTKVFFKAGVLGMLEDMRDERLSKIISMFQAHIRGYLMRKAYKKLQDQRIGLTLIQR--N 816
Query: 748 TRR 750
R+
Sbjct: 817 VRK 819
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 495 bits (1274), Expect = e-140, Method: Compositional matrix adjust.
Identities = 288/761 (37%), Positives = 409/761 (53%), Gaps = 34/761 (4%)
Query: 2 IQSTSGDEAFVLLSNGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYS 61
IQS G V G + V ++ NP + ++D+ +++L+EP+VL N+ RY+
Sbjct: 52 IQSXEGGXVTVXTEGGETLTVKEDQVFSMNPPXYDXIEDMAMMTHLHEPAVLYNLXERYA 111
Query: 62 RDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGV 119
MIY+ +G + VNP+ +P+Y + AYR K PH+++I+D AY M+ D
Sbjct: 112 AWMIYTYSGLFCVTVNPYXWLPVYNPXVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRE 171
Query: 120 NQSIIISGESGAGKTETAKFAMQYLAALGGGSE------------GIEYEILQTNHILEA 167
NQSI+I+GESGAGKT +QY A + E +E +I+ N +LEA
Sbjct: 172 NQSILITGESGAGKTVNTXRVIQYFATIAASGEKKKEEQSGKMQGTLEDQIISANPLLEA 231
Query: 168 FGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQL 227
FGNA T RNDNSSRFG I IHF A GK+ A I+T+LLE SRV ERSYHIFYQ+
Sbjct: 232 FGNAXTVRNDNSSRFGXFIRIHFGATGKLASADIETYLLEXSRVTFQLPAERSYHIFYQI 291
Query: 228 CAG-APSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQ 286
+ P + L DY+Y+++ E +T+ +DD + A+DI+ ++
Sbjct: 292 MSNXXPELIDMLLITTNPYDYHYVSEGE-ITVPSIDDQEELMATDSAIDILGFSADEXTA 350
Query: 287 TFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGK 346
+ + AV+ GN+ F E E E AA LMG +S EL+ AL ++ G
Sbjct: 351 IYXLTGAVMHYGNLKFXQXQREEQAEPDGTEVADXAAYLMGLNSAELLKALCYPRVGVGN 410
Query: 347 DSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFES 406
+++ T+ + +S ALA +Y +F W+V +IN+ L+ KQ I +LDI GFE
Sbjct: 411 EAVTXGETVSEVHNSVGALAXAVYEXMFLWMVIRINQQLDT-KQPRQYFIGVLDIAGFEI 469
Query: 407 FKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEF-EDNEECLNLIEKK 465
F NSFEQ CIN+ NE LQQ FN H+F LEQEEY +G++W ++F D C+ LIE
Sbjct: 470 FDFNSFEQLCINFTNEXLQQFFNHHMFVLEQEEYXXEGIEWEFIDFGMDLAACIELIE-X 528
Query: 466 PLGVLSLLDEESNFPKATDLTFANKL-KQHLGSNSCF---KGERGRA---FSIRHYAGEV 518
P+G+ S+L+EE FPKATD +F N L +HLG ++ F K +G+A FS+ HYAG V
Sbjct: 529 PMGIFSILEEECMFPKATDTSFXNXLYDEHLGKSNNFQKPKPAKGKAEAHFSLVHYAGTV 588
Query: 519 PYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFXXXXXXXXXXXXXXXXXXXLDTQKQS 578
Y+ +G+LE N DPL +I L + L L + Q+
Sbjct: 589 DYNISGWLEXNXDPLNETVIGLYQXSSVXTLALLFATYGGEAEGGGGKKGGKKKGSSFQT 648
Query: 579 VGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISR 638
V F+ L LM L +T PHF+RCI PN PG E +LVL Q RC GVLE +RI R
Sbjct: 649 VSALFRENLNXLMANLRSTHPHFVRCIIPNETXTPGAMEHELVLHQLRCNGVLEGIRICR 708
Query: 639 SGYPTRMRHQEFAGRYGVL----LSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYL 694
G+P+R+ + +F RY VL + E Q D S +L +V Y G+T ++
Sbjct: 709 KGFPSRVLYADFKQRYRVLNASAIPEGQF-MDSKKASEKLLGGGDVDHTQYAFGHTXVFF 767
Query: 695 RSGQLAALEDRRKQVLQAIIRLQ--KCFRGYQARSRFRELC 733
+G L LE+ R L II +C RG+ R +R +
Sbjct: 768 XAGLLGLLEEMRDDXLAEIITATQARC-RGFLMRVEYRAMV 807
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 495 bits (1274), Expect = e-140, Method: Compositional matrix adjust.
Identities = 288/761 (37%), Positives = 409/761 (53%), Gaps = 34/761 (4%)
Query: 2 IQSTSGDEAFVLLSNGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYS 61
IQS G V G + V ++ NP + ++D+ +++L+EP+VL N+ RY+
Sbjct: 49 IQSXEGGXVTVXTEGGETLTVKEDQVFSMNPPXYDXIEDMAMMTHLHEPAVLYNLXERYA 108
Query: 62 RDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGV 119
MIY+ +G + VNP+ +P+Y + AYR K PH+++I+D AY M+ D
Sbjct: 109 AWMIYTYSGLFCVTVNPYXWLPVYNPXVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRE 168
Query: 120 NQSIIISGESGAGKTETAKFAMQYLAALGGGSE------------GIEYEILQTNHILEA 167
NQSI+I+GESGAGKT +QY A + E +E +I+ N +LEA
Sbjct: 169 NQSILITGESGAGKTVNTXRVIQYFATIAASGEKKKEEQSGKMQGTLEDQIISANPLLEA 228
Query: 168 FGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQL 227
FGNA T RNDNSSRFG I IHF A GK+ A I+T+LLE SRV ERSYHIFYQ+
Sbjct: 229 FGNAXTVRNDNSSRFGXFIRIHFGATGKLASADIETYLLEXSRVTFQLPAERSYHIFYQI 288
Query: 228 CAG-APSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQ 286
+ P + L DY+Y+++ E +T+ +DD + A+DI+ ++
Sbjct: 289 MSNXXPELIDMLLITTNPYDYHYVSEGE-ITVPSIDDQEELMATDSAIDILGFSADEXTA 347
Query: 287 TFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGK 346
+ + AV+ GN+ F E E E AA LMG +S EL+ AL ++ G
Sbjct: 348 IYXLTGAVMHYGNLKFXQXQREEQAEPDGTEVADXAAYLMGLNSAELLKALCYPRVGVGN 407
Query: 347 DSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFES 406
+++ T+ + +S ALA +Y +F W+V +IN+ L+ KQ I +LDI GFE
Sbjct: 408 EAVTXGETVSEVHNSVGALAXAVYEXMFLWMVIRINQQLDT-KQPRQYFIGVLDIAGFEI 466
Query: 407 FKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEF-EDNEECLNLIEKK 465
F NSFEQ CIN+ NE LQQ FN H+F LEQEEY +G++W ++F D C+ LIE
Sbjct: 467 FDFNSFEQLCINFTNEXLQQFFNHHMFVLEQEEYXXEGIEWEFIDFGMDLAACIELIE-X 525
Query: 466 PLGVLSLLDEESNFPKATDLTFANKL-KQHLGSNSCF---KGERGRA---FSIRHYAGEV 518
P+G+ S+L+EE FPKATD +F N L +HLG ++ F K +G+A FS+ HYAG V
Sbjct: 526 PMGIFSILEEECMFPKATDTSFXNXLYDEHLGKSNNFQKPKPAKGKAEAHFSLVHYAGTV 585
Query: 519 PYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFXXXXXXXXXXXXXXXXXXXLDTQKQS 578
Y+ +G+LE N DPL +I L + L L + Q+
Sbjct: 586 DYNISGWLEXNXDPLNETVIGLYQXSSVXTLALLFATYGGEAEGGGGKKGGKKKGSSFQT 645
Query: 579 VGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISR 638
V F+ L LM L +T PHF+RCI PN PG E +LVL Q RC GVLE +RI R
Sbjct: 646 VSALFRENLNXLMANLRSTHPHFVRCIIPNETXTPGAMEHELVLHQLRCNGVLEGIRICR 705
Query: 639 SGYPTRMRHQEFAGRYGVL----LSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYL 694
G+P+R+ + +F RY VL + E Q D S +L +V Y G+T ++
Sbjct: 706 KGFPSRVLYADFKQRYRVLNASAIPEGQF-MDSKKASEKLLGGGDVDHTQYAFGHTXVFF 764
Query: 695 RSGQLAALEDRRKQVLQAIIRLQ--KCFRGYQARSRFRELC 733
+G L LE+ R L II +C RG+ R +R +
Sbjct: 765 XAGLLGLLEEMRDDXLAEIITATQARC-RGFLMRVEYRAMV 804
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 473 bits (1216), Expect = e-133, Method: Compositional matrix adjust.
Identities = 284/759 (37%), Positives = 414/759 (54%), Gaps = 34/759 (4%)
Query: 16 NGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIA 75
+G +++ ++ NP +D+ +L+ LNE SVL+N++ RY +IY+ +G +
Sbjct: 40 SGRRLRLPRDQIQRMNPPKFSKAEDMAELTCLNEASVLHNLRERYYSGLIYTYSGLFCVV 99
Query: 76 VNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGK 133
+NP+K +PIY + YR K PHVYA+ + AY M+ D +QSI+ +GESGAGK
Sbjct: 100 INPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGK 159
Query: 134 TETAKFAMQYLAALGGGSEG---------IEYEILQTNHILEAFGNAKTSRNDNSSRFGK 184
TE K +QYLA + +G +E ++LQ N ILEAFGNAKT +NDNSSRFGK
Sbjct: 160 TENTKKVIQYLAHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGK 219
Query: 185 LIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVA 244
I I+F G I GA I+T+LLEKSR ++ A E S+HIFYQL GA LK L L+
Sbjct: 220 FIRINFDVAGYIVGANIETYLLEKSRAIRQAKDECSFHIFYQLLGGAGEQLKADLLLEPC 279
Query: 245 NDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQV 304
+ Y +L + + + F +E+L ++ E+ M++AVL GNI+ +
Sbjct: 280 SHYRFLTNGPSSSPG--QERELFQETLESLRVLGFSHEEIISMLRMVSAVLQFGNIALKR 337
Query: 305 IDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDA 364
N + + + A L+G + AL T +I+ G+D + K T +QA + +A
Sbjct: 338 ERNTDQATMPDNTAAQKLCRLLGLGVTDFSRALLTPRIKVGRDYVQKAQTKEQADFALEA 397
Query: 365 LAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERL 424
LAK Y LF W+V ++N++L+ + + ILDI GFE F+ NSFEQ CINY NE+L
Sbjct: 398 LAKATYERLFRWLVLRLNRALDRSPRQGASFLGILDIAGFEIFQLNSFEQLCINYTNEKL 457
Query: 425 QQHFNRHLFKLEQEEYELDGVDWTRVEFE-DNEECLNLIEK--KPLGVLSLLDEESNFPK 481
QQ FN +F LEQEEY+ +G+ WT ++F D + C++LIE+ P G+L+LLDEE FPK
Sbjct: 458 QQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPK 517
Query: 482 ATDLTFANKLKQHLGSNSCFKGERG----RAFSIRHYAGEVPYDTNGFLEKNRDPLQTDI 537
ATD +F K+ Q G + F+ R FS+ HYAG+V Y N +L KN DPL ++
Sbjct: 518 ATDKSFVEKVAQEQGGHPKFQRPRHLRDQADFSVLHYAGKVDYKANEWLMKNMDPLNDNV 577
Query: 538 IQLLSSCTCQVLQLFXXXXXXXXXXXXXXXXXXXLDTQK------QSVGTKFKGQLFKLM 591
LL T ++ + ++VG +K L +LM
Sbjct: 578 AALLHQSTDRLTAEIWKDVEGIVGLEQVSSLGDGPPGGRPRRGMFRTVGQLYKESLSRLM 637
Query: 592 HQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFA 651
L NT P F+RCI PN ++ G E LVL Q RC GVLE +RI R G+P R+ QEF
Sbjct: 638 ATLSNTNPSFVRCIVPNHEKRAGKLEPRLVLDQLRCNGVLEGIRICRQGFPNRILFQEFR 697
Query: 652 GRYGVLLSE--KQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR--- 706
RY +L + D ++Q + P +Y+VG +K++ R+G LA LE+ R
Sbjct: 698 QRYEILTPNAIPKGFMDGKQACEKMIQALELDPNLYRVGQSKIFFRAGVLAQLEEERASE 757
Query: 707 ---KQVLQAIIRLQKCFRGYQARSRFRELCNGVITLQSF 742
L+ L + QA R+ + + ++QSF
Sbjct: 758 QTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSF 796
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 452 bits (1162), Expect = e-127, Method: Compositional matrix adjust.
Identities = 265/732 (36%), Positives = 409/732 (55%), Gaps = 33/732 (4%)
Query: 26 ELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-I 84
++ PA D + V+D L YLNE ++L+NI+ RYS+D IY+ +LIAVNP+ +P I
Sbjct: 47 QVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKI 106
Query: 85 YGNKFITAYRQKVMDS--PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQ 142
Y ++ I +Y+ K + + PHV+AIAD A+ +M ++QSII+SGESGAGKTE KF ++
Sbjct: 107 YSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLR 166
Query: 143 YLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQ 202
YL G + I+ I++ N +LEAFGNAKT RN+NSSRFGK +EIHF+ + G +
Sbjct: 167 YLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVS 226
Query: 203 TFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVD 262
+LLEKSR+ ER+YHIFY+LCAGA ++ERL+L +++ YLN+ L +D
Sbjct: 227 HYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGGSLKDPLLD 286
Query: 263 DAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNEN---HVEVIADEAV 319
D +F + A+ + + E++ F ++A VL LGNI F+ + + +++ + +A+
Sbjct: 287 DHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQAL 346
Query: 320 TTAAMLMGCSSDELMLALSTHKI----QAGKDSIAK-KLTLQQAIDSRDALAKFIYGSLF 374
A L+G D+L ++L+T + K ++ K L ++QA ++RDALAK +Y LF
Sbjct: 347 EYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLF 406
Query: 375 DWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFK 434
D +V ++N+ + + I +LDI GFE F+ NSFEQFCINY NE+LQQ FN + K
Sbjct: 407 DHVVNRVNQCFPF--ETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILK 464
Query: 435 LEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQ- 493
EQE Y+ +G+ V + DN++C++LIE + +G+L +LDEE+ P+ +D F + + Q
Sbjct: 465 EEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQK 524
Query: 494 -------------HLGSNSCFKGERGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQL 540
L + + + G F IRH+AG V Y+T F+EKN D L
Sbjct: 525 HKDHFRLSIPRKSKLAIHRNIRDDEG--FIIRHFAGAVCYETTQFVEKNNDALHMS---- 578
Query: 541 LSSCTCQVLQLFXXXXXXXXXXXXXXXXXXXLDTQKQSVGTKFKGQLFKLMHQLENTRPH 600
L S C+ F SVG KFK QL L+ +L +T
Sbjct: 579 LESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNLLLDKLRSTGAS 638
Query: 601 FIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE 660
FIRCIKPN K +E +L Q +C G++ ++ + + G+P+R E Y + +
Sbjct: 639 FIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPD 698
Query: 661 KQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQAIIRLQKCF 720
K DP A+ + + Y+ G TK++ R G+ A + K + L K
Sbjct: 699 KLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRV 758
Query: 721 RGYQARSRFREL 732
+ SR++++
Sbjct: 759 NHWLICSRWKKV 770
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 451 bits (1161), Expect = e-127, Method: Compositional matrix adjust.
Identities = 265/732 (36%), Positives = 409/732 (55%), Gaps = 33/732 (4%)
Query: 26 ELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-I 84
++ PA D + V+D L YLNE ++L+NI+ RYS+D IY+ +LIAVNP+ +P I
Sbjct: 46 QVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKI 105
Query: 85 YGNKFITAYRQKVMDS--PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQ 142
Y ++ I +Y+ K + + PHV+AIAD A+ +M ++QSII+SGESGAGKTE KF ++
Sbjct: 106 YSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLR 165
Query: 143 YLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQ 202
YL G + I+ I++ N +LEAFGNAKT RN+NSSRFGK +EIHF+ + G +
Sbjct: 166 YLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVS 225
Query: 203 TFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVD 262
+LLEKSR+ ER+YHIFY+LCAGA ++ERL+L +++ YLN+ L +D
Sbjct: 226 HYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGGSLKDPLLD 285
Query: 263 DAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNEN---HVEVIADEAV 319
D +F + A+ + + E++ F ++A VL LGNI F+ + + +++ + +A+
Sbjct: 286 DHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQAL 345
Query: 320 TTAAMLMGCSSDELMLALSTHKI----QAGKDSIAK-KLTLQQAIDSRDALAKFIYGSLF 374
A L+G D+L ++L+T + K ++ K L ++QA ++RDALAK +Y LF
Sbjct: 346 EYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLF 405
Query: 375 DWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFK 434
D +V ++N+ + + I +LDI GFE F+ NSFEQFCINY NE+LQQ FN + K
Sbjct: 406 DHVVNRVNQCFPF--ETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILK 463
Query: 435 LEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQ- 493
EQE Y+ +G+ V + DN++C++LIE + +G+L +LDEE+ P+ +D F + + Q
Sbjct: 464 EEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQK 523
Query: 494 -------------HLGSNSCFKGERGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQL 540
L + + + G F IRH+AG V Y+T F+EKN D L
Sbjct: 524 HKDHFRLSIPRKSKLAIHRNIRDDEG--FIIRHFAGAVCYETTQFVEKNNDALHMS---- 577
Query: 541 LSSCTCQVLQLFXXXXXXXXXXXXXXXXXXXLDTQKQSVGTKFKGQLFKLMHQLENTRPH 600
L S C+ F SVG KFK QL L+ +L +T
Sbjct: 578 LESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNLLLDKLRSTGAS 637
Query: 601 FIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE 660
FIRCIKPN K +E +L Q +C G++ ++ + + G+P+R E Y + +
Sbjct: 638 FIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPD 697
Query: 661 KQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQAIIRLQKCF 720
K DP A+ + + Y+ G TK++ R G+ A + K + L K
Sbjct: 698 KLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRV 757
Query: 721 RGYQARSRFREL 732
+ SR++++
Sbjct: 758 NHWLICSRWKKV 769
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 450 bits (1158), Expect = e-126, Method: Compositional matrix adjust.
Identities = 265/732 (36%), Positives = 408/732 (55%), Gaps = 33/732 (4%)
Query: 26 ELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-I 84
++ PA D + V+D L YLNE ++L+NI+ RYS+D IY+ +LIAVNP+ +P I
Sbjct: 46 QVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKI 105
Query: 85 YGNKFITAYRQKVMDS--PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQ 142
Y ++ I +Y+ K + + PHV+AIAD A+ +M ++QSII+SGESGAGKTE KF ++
Sbjct: 106 YSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLR 165
Query: 143 YLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQ 202
YL G + I I++ N +LEAFGNAKT RN+NSSRFGK +EIHF+ + G +
Sbjct: 166 YLTESYGTGQDIYDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVS 225
Query: 203 TFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVD 262
+LLEKSR+ ER+YHIFY+LCAGA ++ERL+L +++ YLN+ L +D
Sbjct: 226 HYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGGSLKDPLLD 285
Query: 263 DAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNEN---HVEVIADEAV 319
D +F + A+ + + E++ F ++A VL LGNI F+ + + +++ + +A+
Sbjct: 286 DHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQAL 345
Query: 320 TTAAMLMGCSSDELMLALSTHKI----QAGKDSIAK-KLTLQQAIDSRDALAKFIYGSLF 374
A L+G D+L ++L+T + K ++ K L ++QA ++RDALAK +Y LF
Sbjct: 346 EYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLF 405
Query: 375 DWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFK 434
D +V ++N+ + + I +LDI GFE F+ NSFEQFCINY NE+LQQ FN + K
Sbjct: 406 DHVVNRVNQCFPF--ETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILK 463
Query: 435 LEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQ- 493
EQE Y+ +G+ V + DN++C++LIE + +G+L +LDEE+ P+ +D F + + Q
Sbjct: 464 EEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQK 523
Query: 494 -------------HLGSNSCFKGERGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQL 540
L + + + G F IRH+AG V Y+T F+EKN D L
Sbjct: 524 HKDHFRLSIPRKSKLAIHRNIRDDEG--FIIRHFAGAVCYETTQFVEKNNDALHMS---- 577
Query: 541 LSSCTCQVLQLFXXXXXXXXXXXXXXXXXXXLDTQKQSVGTKFKGQLFKLMHQLENTRPH 600
L S C+ F SVG KFK QL L+ +L +T
Sbjct: 578 LESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNLLLDKLRSTGAS 637
Query: 601 FIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE 660
FIRCIKPN K +E +L Q +C G++ ++ + + G+P+R E Y + +
Sbjct: 638 FIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPD 697
Query: 661 KQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQAIIRLQKCF 720
K DP A+ + + Y+ G TK++ R G+ A + K + L K
Sbjct: 698 KLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRV 757
Query: 721 RGYQARSRFREL 732
+ SR++++
Sbjct: 758 NHWLICSRWKKV 769
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 442 bits (1138), Expect = e-124, Method: Compositional matrix adjust.
Identities = 266/758 (35%), Positives = 411/758 (54%), Gaps = 59/758 (7%)
Query: 26 ELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-I 84
++ PA D + V+D L YLNE ++L+NI+ RYS+D IY+ +LIAVNP+ +P I
Sbjct: 46 QVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKI 105
Query: 85 YGNKFITAYRQKVMDS--PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQ 142
Y ++ I +Y+ K + + PHV+AIAD A+ +M ++QSII+SGESGAGKTE KF ++
Sbjct: 106 YSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLR 165
Query: 143 YLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQ 202
YL G + I+ I++ N +LEAFGNAKT RN+NSSRFGK +EIHF+ + G +
Sbjct: 166 YLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVS 225
Query: 203 TFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLN----------- 251
+LLEKSR+ ER+YHIFY+LCAGA ++ERL+L +++ YLN
Sbjct: 226 HYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKE 285
Query: 252 ---------------QSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLW 296
++ L G+DD +F + A+ + + E++ F ++A VL
Sbjct: 286 TDKQILQNRKSPEYLKAGSLKDPGLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLH 345
Query: 297 LGNISFQVIDNEN---HVEVIADEAVTTAAMLMGCSSDELMLALSTHKI----QAGKDSI 349
LGNI F+ + + +++ + +A+ A L+G D+L ++L+T + K ++
Sbjct: 346 LGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTV 405
Query: 350 AK-KLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFK 408
K L ++QA ++RDALAK +Y LFD +V ++N+ + + I +LDI GFE F+
Sbjct: 406 IKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPF--ETSSYFIGVLDIAGFEYFE 463
Query: 409 KNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLG 468
NSFEQFCINY NE+LQQ FN + K EQE Y+ +G+ V + DN++C++LIE + +G
Sbjct: 464 HNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVG 523
Query: 469 VLSLLDEESNFPKATDLTFANKLKQ--------------HLGSNSCFKGERGRAFSIRHY 514
+L +LDEE+ P+ +D F + + Q L + + + G F IRH+
Sbjct: 524 ILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEG--FIIRHF 581
Query: 515 AGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFXXXXXXXXXXXXXXXXXXXLDT 574
AG V Y+T F+EKN D L L S C+ F
Sbjct: 582 AGAVCYETTQFVEKNNDALHMS----LESLICESRDKFIRELFESSTNNNKDTKQKAGKL 637
Query: 575 QKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIV 634
SVG KFK QL L+ +L +T FIRCIKPN K +E +L Q +C G++ ++
Sbjct: 638 SFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVL 697
Query: 635 RISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYL 694
+ + G+P+R E Y + +K DP A+ + + Y+ G TK++
Sbjct: 698 DLMQGGFPSRASFHELYNMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFF 757
Query: 695 RSGQLAALEDRRKQVLQAIIRLQKCFRGYQARSRFREL 732
R G+ A + K + L K + SR++++
Sbjct: 758 RPGKFAEFDQIMKSDPDHLAELVKRVNHWLICSRWKKV 795
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 440 bits (1131), Expect = e-123, Method: Compositional matrix adjust.
Identities = 276/820 (33%), Positives = 432/820 (52%), Gaps = 86/820 (10%)
Query: 26 ELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-I 84
++ PA D + V+D L YLNE ++L+NI+ RYS+D IY+ +LIAVNP+ +P I
Sbjct: 47 QVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKI 106
Query: 85 YGNKFITAYRQKVMDS--PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQ 142
Y ++ I +Y+ K + + PHV+AIAD A+ +M ++QSII+SGESGAGKTE KF ++
Sbjct: 107 YSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLR 166
Query: 143 YLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQ 202
YL G + I+ I++ N +LEAFGNAKT RN+NSSRFGK +EIHF+ + G +
Sbjct: 167 YLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVS 226
Query: 203 TFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLN----------- 251
+LLEKSR+ ER+YHIFY+LCAGA ++ERL+L +++ YLN
Sbjct: 227 HYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKE 286
Query: 252 ---------------QSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLW 296
++ L +DD +F + A+ + + E++ F ++A VL
Sbjct: 287 TDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLH 346
Query: 297 LGNISFQVIDNEN---HVEVIADEAVTTAAMLMGCSSDELMLALSTHKI----QAGKDSI 349
LGNI F+ + + +++ + +A+ A L+G D+L ++L+T + K ++
Sbjct: 347 LGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTV 406
Query: 350 AK-KLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFK 408
K L ++QA ++RDALAK +Y LFD +V ++N+ + + I +LDI GFE F+
Sbjct: 407 IKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPF--ETSSYFIGVLDIAGFEYFE 464
Query: 409 KNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLG 468
NSFEQFCINY NE+LQQ FN + K EQE Y+ +G+ V + DN++C++LIE + +G
Sbjct: 465 HNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVG 524
Query: 469 VLSLLDEESNFPKATDLTFANKLKQ--------------HLGSNSCFKGERGRAFSIRHY 514
+L +LDEE+ P+ +D F + + Q L + + + G F IRH+
Sbjct: 525 ILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEG--FIIRHF 582
Query: 515 AGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFXXXXXXXXXXXXXXXXXXXLDT 574
AG V Y+T F+EKN D L L S C+ F
Sbjct: 583 AGAVCYETTQFVEKNNDALHMS----LESLICESRDKFIRELFESSTNNNKDTKQKAGKL 638
Query: 575 QKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIV 634
SVG KFK QL L+ +L +T FIRCIKPN K +E +L Q +C G++ ++
Sbjct: 639 SFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVL 698
Query: 635 RISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYL 694
+ + G+P+R E Y + +K DP A+ + + Y+ G TK++
Sbjct: 699 DLMQGGFPSRASFHELYNMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFF 758
Query: 695 RSGQLAALEDRRKQVLQAIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRRHAS 754
R G+ A + K + L K + SR++++
Sbjct: 759 RPGKFAEFDQIMKSDPDHLAELVKRVNHWLICSRWKKV---------------------- 796
Query: 755 LGKSCSAVVPEIRDE-QLREIIC--LQSAIRGWLVRKQLK 791
+ CS V +++++ + R C +Q IR WL +++ K
Sbjct: 797 --QWCSLSVIKLKNKIKYRAEACIKMQKTIRMWLCKRRHK 834
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 438 bits (1127), Expect = e-123, Method: Compositional matrix adjust.
Identities = 260/729 (35%), Positives = 399/729 (54%), Gaps = 59/729 (8%)
Query: 26 ELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-I 84
++ PA D + V+D L YLNE ++L+NI+ RYS+D IY+ +LIAVNP+ +P I
Sbjct: 56 QVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKI 115
Query: 85 YGNKFITAYRQKVMDS--PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQ 142
Y ++ I +Y+ K + + PHV+AIAD A+ +M ++QSII+SGESGAGKTE KF ++
Sbjct: 116 YSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLR 175
Query: 143 YLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQ 202
YL G + I+ I++ N +LEAFGNAKT RN+NSSRFGK +EIHF+ + G +
Sbjct: 176 YLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVS 235
Query: 203 TFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLN----------- 251
+LLEKSR+ ER+YHIFY+LCAGA ++ERL+L +++ YLN
Sbjct: 236 HYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKE 295
Query: 252 ---------------QSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLW 296
++ L +DD +F + A+ + + E++ F ++A VL
Sbjct: 296 TDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLH 355
Query: 297 LGNISFQVIDNEN---HVEVIADEAVTTAAMLMGCSSDELMLALSTHKI----QAGKDSI 349
LGNI F+ + + +++ + +A+ A L+G D+L ++L+T + K ++
Sbjct: 356 LGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTV 415
Query: 350 AK-KLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFK 408
K L ++QA ++RDALAK +Y LFD +V ++N+ + + I +LDI GFE F+
Sbjct: 416 IKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPF--ETSSYFIGVLDIAGFEYFE 473
Query: 409 KNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLG 468
NSFEQFCINY NE+LQQ FN + K EQE Y+ +G+ V + DN++C++LIE + +G
Sbjct: 474 HNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVG 533
Query: 469 VLSLLDEESNFPKATDLTFANKLKQ--------------HLGSNSCFKGERGRAFSIRHY 514
+L +LDEE+ P+ +D F + + Q L + + + G F IRH+
Sbjct: 534 ILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHENIRDDEG--FIIRHF 591
Query: 515 AGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFXXXXXXXXXXXXXXXXXXXLDT 574
AG V Y+T F+EKN D L L S C+ F
Sbjct: 592 AGAVCYETTQFVEKNNDALHMS----LESLICESRDKFIRELFESSTNNNKDTKQKAGKL 647
Query: 575 QKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIV 634
SVG KFK QL L+ +L +T FIRCIKPN K +E +L Q +C G++ ++
Sbjct: 648 SFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVL 707
Query: 635 RISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYL 694
+ + G+P+R E Y + +K DP A+ + + Y+ G TK++
Sbjct: 708 DLMQGGFPSRASFHELYNMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFF 767
Query: 695 RSGQLAALE 703
R G+ A +
Sbjct: 768 RPGKFAEFD 776
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 438 bits (1127), Expect = e-123, Method: Compositional matrix adjust.
Identities = 265/758 (34%), Positives = 410/758 (54%), Gaps = 59/758 (7%)
Query: 26 ELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-I 84
++ PA D + V+D L YLNE ++L+NI+ RYS+D IY+ +LIAVNP+ +P I
Sbjct: 46 QVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKI 105
Query: 85 YGNKFITAYRQKVMDS--PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQ 142
Y ++ I +Y+ K + + PHV+AIAD A+ +M ++QSII+SGESGAGKTE KF ++
Sbjct: 106 YSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLR 165
Query: 143 YLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQ 202
YL G + I+ I++ N +LEAFGNAKT RN+NSSRFGK +EIHF+ + G +
Sbjct: 166 YLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVS 225
Query: 203 TFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLN----------- 251
+LLEKSR+ ER+YHIFY+LCAGA ++ERL+L +++ YLN
Sbjct: 226 HYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKE 285
Query: 252 ---------------QSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLW 296
++ L +DD +F + A+ + + E++ F ++A VL
Sbjct: 286 TDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLH 345
Query: 297 LGNISFQVIDNEN---HVEVIADEAVTTAAMLMGCSSDELMLALSTHKI----QAGKDSI 349
LGNI F+ + + +++ + +A+ A L+G D+L ++L+T + K ++
Sbjct: 346 LGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTV 405
Query: 350 AK-KLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFK 408
K L ++QA ++RDALAK +Y LFD +V ++N+ + + I +LDI GFE F+
Sbjct: 406 IKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPF--ETSSYFIGVLDIAGFEYFE 463
Query: 409 KNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLG 468
NSFEQFCINY NE+LQQ FN + K EQE Y+ +G+ V + DN++C++LIE + +G
Sbjct: 464 HNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVG 523
Query: 469 VLSLLDEESNFPKATDLTFANKLKQ--------------HLGSNSCFKGERGRAFSIRHY 514
+L +LDEE+ P+ +D F + + Q L + + + G F IRH+
Sbjct: 524 ILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEG--FIIRHF 581
Query: 515 AGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFXXXXXXXXXXXXXXXXXXXLDT 574
AG V Y+T F+EKN D L L S C+ F
Sbjct: 582 AGAVCYETTQFVEKNNDALHMS----LESLICESRDKFIRELFESSTNNNKDTKQKAGKL 637
Query: 575 QKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIV 634
SVG KFK QL L+ +L +T FIRCIKPN K +E +L Q +C G++ ++
Sbjct: 638 SFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVL 697
Query: 635 RISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYL 694
+ + G+P+R E Y + +K DP A+ + + Y+ G TK++
Sbjct: 698 DLMQGGFPSRASFHELYNMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFF 757
Query: 695 RSGQLAALEDRRKQVLQAIIRLQKCFRGYQARSRFREL 732
R G+ A + K + L K + SR++++
Sbjct: 758 RPGKFAEFDQIMKSDPDHLAELVKRVNHWLICSRWKKV 795
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 438 bits (1127), Expect = e-123, Method: Compositional matrix adjust.
Identities = 260/729 (35%), Positives = 399/729 (54%), Gaps = 59/729 (8%)
Query: 26 ELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-I 84
++ PA D + V+D L YLNE ++L+NI+ RYS+D IY+ +LIAVNP+ +P I
Sbjct: 43 QVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKI 102
Query: 85 YGNKFITAYRQKVMDS--PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQ 142
Y ++ I +Y+ K + + PHV+AIAD A+ +M ++QSII+SGESGAGKTE KF ++
Sbjct: 103 YSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLR 162
Query: 143 YLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQ 202
YL G + I+ I++ N +LEAFGNAKT RN+NSSRFGK +EIHF+ + G +
Sbjct: 163 YLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVS 222
Query: 203 TFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLN----------- 251
+LLEKSR+ ER+YHIFY+LCAGA ++ERL+L +++ YLN
Sbjct: 223 HYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKE 282
Query: 252 ---------------QSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLW 296
++ L +DD +F + A+ + + E++ F ++A VL
Sbjct: 283 TDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLH 342
Query: 297 LGNISFQVIDNEN---HVEVIADEAVTTAAMLMGCSSDELMLALSTHKI----QAGKDSI 349
LGNI F+ + + +++ + +A+ A L+G D+L ++L+T + K ++
Sbjct: 343 LGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTV 402
Query: 350 AK-KLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFK 408
K L ++QA ++RDALAK +Y LFD +V ++N+ + + I +LDI GFE F+
Sbjct: 403 IKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPF--ETSSYFIGVLDIAGFEYFE 460
Query: 409 KNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLG 468
NSFEQFCINY NE+LQQ FN + K EQE Y+ +G+ V + DN++C++LIE + +G
Sbjct: 461 HNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVG 520
Query: 469 VLSLLDEESNFPKATDLTFANKLKQ--------------HLGSNSCFKGERGRAFSIRHY 514
+L +LDEE+ P+ +D F + + Q L + + + G F IRH+
Sbjct: 521 ILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEG--FIIRHF 578
Query: 515 AGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFXXXXXXXXXXXXXXXXXXXLDT 574
AG V Y+T F+EKN D L L S C+ F
Sbjct: 579 AGAVCYETTQFVEKNNDALHMS----LESLICESRDKFIRELFESSTNNNKDTKQKAGKL 634
Query: 575 QKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIV 634
SVG KFK QL L+ +L +T FIRCIKPN K +E +L Q +C G++ ++
Sbjct: 635 SFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVL 694
Query: 635 RISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYL 694
+ + G+P+R E Y + +K DP A+ + + Y+ G TK++
Sbjct: 695 DLMQGGFPSRASFHELYNMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFF 754
Query: 695 RSGQLAALE 703
R G+ A +
Sbjct: 755 RPGKFAEFD 763
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 438 bits (1127), Expect = e-123, Method: Compositional matrix adjust.
Identities = 265/758 (34%), Positives = 410/758 (54%), Gaps = 59/758 (7%)
Query: 26 ELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-I 84
++ PA D + V+D L YLNE ++L+NI+ RYS+D IY+ +LIAVNP+ +P I
Sbjct: 47 QVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKI 106
Query: 85 YGNKFITAYRQKVMDS--PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQ 142
Y ++ I +Y+ K + + PHV+AIAD A+ +M ++QSII+SGESGAGKTE KF ++
Sbjct: 107 YSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLR 166
Query: 143 YLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQ 202
YL G + I+ I++ N +LEAFGNAKT RN+NSSRFGK +EIHF+ + G +
Sbjct: 167 YLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVS 226
Query: 203 TFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLN----------- 251
+LLEKSR+ ER+YHIFY+LCAGA ++ERL+L +++ YLN
Sbjct: 227 HYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKE 286
Query: 252 ---------------QSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLW 296
++ L +DD +F + A+ + + E++ F ++A VL
Sbjct: 287 TDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLH 346
Query: 297 LGNISFQVIDNEN---HVEVIADEAVTTAAMLMGCSSDELMLALSTHKI----QAGKDSI 349
LGNI F+ + + +++ + +A+ A L+G D+L ++L+T + K ++
Sbjct: 347 LGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTV 406
Query: 350 AK-KLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFK 408
K L ++QA ++RDALAK +Y LFD +V ++N+ + + I +LDI GFE F+
Sbjct: 407 IKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPF--ETSSYFIGVLDIAGFEYFE 464
Query: 409 KNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLG 468
NSFEQFCINY NE+LQQ FN + K EQE Y+ +G+ V + DN++C++LIE + +G
Sbjct: 465 HNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVG 524
Query: 469 VLSLLDEESNFPKATDLTFANKLKQ--------------HLGSNSCFKGERGRAFSIRHY 514
+L +LDEE+ P+ +D F + + Q L + + + G F IRH+
Sbjct: 525 ILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEG--FIIRHF 582
Query: 515 AGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFXXXXXXXXXXXXXXXXXXXLDT 574
AG V Y+T F+EKN D L L S C+ F
Sbjct: 583 AGAVCYETTQFVEKNNDALHMS----LESLICESRDKFIRELFESSTNNNKDTKQKAGKL 638
Query: 575 QKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIV 634
SVG KFK QL L+ +L +T FIRCIKPN K +E +L Q +C G++ ++
Sbjct: 639 SFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVL 698
Query: 635 RISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYL 694
+ + G+P+R E Y + +K DP A+ + + Y+ G TK++
Sbjct: 699 DLMQGGFPSRASFHELYNMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFF 758
Query: 695 RSGQLAALEDRRKQVLQAIIRLQKCFRGYQARSRFREL 732
R G+ A + K + L K + SR++++
Sbjct: 759 RPGKFAEFDQIMKSDPDHLAELVKRVNHWLICSRWKKV 796
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 438 bits (1126), Expect = e-122, Method: Compositional matrix adjust.
Identities = 260/729 (35%), Positives = 399/729 (54%), Gaps = 59/729 (8%)
Query: 26 ELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-I 84
++ PA D + V+D L YLNE ++L+NI+ RYS+D IY+ +LIAVNP+ +P I
Sbjct: 56 QVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKI 115
Query: 85 YGNKFITAYRQKVMDS--PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQ 142
Y ++ I +Y+ K + + PHV+AIAD A+ +M ++QSII+SGESGAGKTE KF ++
Sbjct: 116 YSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLR 175
Query: 143 YLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQ 202
YL G + I+ I++ N +LEAFGNAKT RN+NSSRFGK +EIHF+ + G +
Sbjct: 176 YLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVS 235
Query: 203 TFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLN----------- 251
+LLEKSR+ ER+YHIFY+LCAGA ++ERL+L +++ YLN
Sbjct: 236 HYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKE 295
Query: 252 ---------------QSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLW 296
++ L +DD +F + A+ + + E++ F ++A VL
Sbjct: 296 TDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLH 355
Query: 297 LGNISFQVIDNEN---HVEVIADEAVTTAAMLMGCSSDELMLALSTHKI----QAGKDSI 349
LGNI F+ + + +++ + +A+ A L+G D+L ++L+T + K ++
Sbjct: 356 LGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTV 415
Query: 350 AK-KLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFK 408
K L ++QA ++RDALAK +Y LFD +V ++N+ + + I +LDI GFE F+
Sbjct: 416 IKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPF--ETSSYFIGVLDIAGFEYFE 473
Query: 409 KNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLG 468
NSFEQFCINY NE+LQQ FN + K EQE Y+ +G+ V + DN++C++LIE + +G
Sbjct: 474 HNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVG 533
Query: 469 VLSLLDEESNFPKATDLTFANKLKQ--------------HLGSNSCFKGERGRAFSIRHY 514
+L +LDEE+ P+ +D F + + Q L + + + G F IRH+
Sbjct: 534 ILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEG--FIIRHF 591
Query: 515 AGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFXXXXXXXXXXXXXXXXXXXLDT 574
AG V Y+T F+EKN D L L S C+ F
Sbjct: 592 AGAVCYETTQFVEKNNDALHMS----LESLICESRDKFIRELFESSTNNNKDTKQKAGKL 647
Query: 575 QKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIV 634
SVG KFK QL L+ +L +T FIRCIKPN K +E +L Q +C G++ ++
Sbjct: 648 SFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVL 707
Query: 635 RISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYL 694
+ + G+P+R E Y + +K DP A+ + + Y+ G TK++
Sbjct: 708 DLMQGGFPSRASFHELYNMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFF 767
Query: 695 RSGQLAALE 703
R G+ A +
Sbjct: 768 RPGKFAEFD 776
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 437 bits (1123), Expect = e-122, Method: Compositional matrix adjust.
Identities = 265/758 (34%), Positives = 409/758 (53%), Gaps = 59/758 (7%)
Query: 26 ELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-I 84
++ PA D + V+D L YLNE ++L+NI+ RYS+D IY+ +LIAVNP+ +P I
Sbjct: 46 QVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKI 105
Query: 85 YGNKFITAYRQKVMDS--PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQ 142
Y ++ I +Y+ K + + PHV+AIAD A+ +M ++QSII+SGESGAGKTE KF ++
Sbjct: 106 YSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLR 165
Query: 143 YLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQ 202
YL G + I I++ N +LEAFGNAKT RN+NSSRFGK +EIHF+ + G +
Sbjct: 166 YLTESYGTGQDIYDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVS 225
Query: 203 TFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLN----------- 251
+LLEKSR+ ER+YHIFY+LCAGA ++ERL+L +++ YLN
Sbjct: 226 HYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKE 285
Query: 252 ---------------QSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLW 296
++ L +DD +F + A+ + + E++ F ++A VL
Sbjct: 286 TDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLH 345
Query: 297 LGNISFQVIDNEN---HVEVIADEAVTTAAMLMGCSSDELMLALSTHKI----QAGKDSI 349
LGNI F+ + + +++ + +A+ A L+G D+L ++L+T + K ++
Sbjct: 346 LGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTV 405
Query: 350 AK-KLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFK 408
K L ++QA ++RDALAK +Y LFD +V ++N+ + + I +LDI GFE F+
Sbjct: 406 IKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPF--ETSSYFIGVLDIAGFEYFE 463
Query: 409 KNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLG 468
NSFEQFCINY NE+LQQ FN + K EQE Y+ +G+ V + DN++C++LIE + +G
Sbjct: 464 HNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVG 523
Query: 469 VLSLLDEESNFPKATDLTFANKLKQ--------------HLGSNSCFKGERGRAFSIRHY 514
+L +LDEE+ P+ +D F + + Q L + + + G F IRH+
Sbjct: 524 ILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEG--FIIRHF 581
Query: 515 AGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFXXXXXXXXXXXXXXXXXXXLDT 574
AG V Y+T F+EKN D L L S C+ F
Sbjct: 582 AGAVCYETTQFVEKNNDALHMS----LESLICESRDKFIRELFESSTNNNKDTKQKAGKL 637
Query: 575 QKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIV 634
SVG KFK QL L+ +L +T FIRCIKPN K +E +L Q +C G++ ++
Sbjct: 638 SFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVL 697
Query: 635 RISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYL 694
+ + G+P+R E Y + +K DP A+ + + Y+ G TK++
Sbjct: 698 DLMQGGFPSRASFHELYNMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFF 757
Query: 695 RSGQLAALEDRRKQVLQAIIRLQKCFRGYQARSRFREL 732
R G+ A + K + L K + SR++++
Sbjct: 758 RPGKFAEFDQIMKSDPDHLAELVKRVNHWLICSRWKKV 795
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 436 bits (1122), Expect = e-122, Method: Compositional matrix adjust.
Identities = 260/729 (35%), Positives = 398/729 (54%), Gaps = 59/729 (8%)
Query: 26 ELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-I 84
++ PA D + V+D L YLNE ++L+NI+ RYS+D IY+ +LIAVNP+ +P I
Sbjct: 44 QVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKI 103
Query: 85 YGNKFITAYRQKVMDS--PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQ 142
Y ++ I +Y+ K + + PHV+AIAD A+ +M ++QSII+SGESGAGKTE KF ++
Sbjct: 104 YSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLR 163
Query: 143 YLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQ 202
YL G + I I++ N +LEAFGNAKT RN+NSSRFGK +EIHF+ + G +
Sbjct: 164 YLTESYGTGQDIYDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVS 223
Query: 203 TFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLN----------- 251
+LLEKSR+ ER+YHIFY+LCAGA ++ERL+L +++ YLN
Sbjct: 224 HYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKE 283
Query: 252 ---------------QSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLW 296
++ L +DD +F + A+ + + E++ F ++A VL
Sbjct: 284 TDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLH 343
Query: 297 LGNISFQVIDNEN---HVEVIADEAVTTAAMLMGCSSDELMLALSTHKI----QAGKDSI 349
LGNI F+ + + +++ + +A+ A L+G D+L ++L+T + K ++
Sbjct: 344 LGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTV 403
Query: 350 AK-KLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFK 408
K L ++QA ++RDALAK +Y LFD +V ++N+ + + I +LDI GFE F+
Sbjct: 404 IKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPF--ETSSYFIGVLDIAGFEYFE 461
Query: 409 KNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLG 468
NSFEQFCINY NE+LQQ FN + K EQE Y+ +G+ V + DN++C++LIE + +G
Sbjct: 462 HNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVG 521
Query: 469 VLSLLDEESNFPKATDLTFANKLKQ--------------HLGSNSCFKGERGRAFSIRHY 514
+L +LDEE+ P+ +D F + + Q L + + + G F IRH+
Sbjct: 522 ILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEG--FIIRHF 579
Query: 515 AGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFXXXXXXXXXXXXXXXXXXXLDT 574
AG V Y+T F+EKN D L L S C+ F
Sbjct: 580 AGAVCYETTQFVEKNNDALHMS----LESLICESRDKFIRELFESSTNNNKDTKQKAGKL 635
Query: 575 QKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIV 634
SVG KFK QL L+ +L +T FIRCIKPN K +E +L Q +C G++ ++
Sbjct: 636 SFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVL 695
Query: 635 RISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYL 694
+ + G+P+R E Y + +K DP A+ + + Y+ G TK++
Sbjct: 696 DLMQGGFPSRASFHELYNMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFF 755
Query: 695 RSGQLAALE 703
R G+ A +
Sbjct: 756 RPGKFAEFD 764
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 434 bits (1116), Expect = e-121, Method: Compositional matrix adjust.
Identities = 264/701 (37%), Positives = 392/701 (55%), Gaps = 44/701 (6%)
Query: 36 EGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAY-- 93
EGV D + L+ + E + + N+ R+ D IY+ G V+I+ NPFK + IY I AY
Sbjct: 8 EGVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNG 67
Query: 94 RQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG--- 150
R K PH+YA+A+ AY M NQ +IISGESGAGKTE +K MQ+L +
Sbjct: 68 RYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSP 127
Query: 151 -SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKS 209
E I +L +N +LEAFGNAKT RNDNSSRFGK +E+ F+A G G KI +LLEKS
Sbjct: 128 NGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKS 187
Query: 210 RVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKV-ANDYNYLNQSECLTIDGVDDAQNFH 268
RVV GERS+HIFYQ+ G + L L A Y YL +S C + +DD+ F
Sbjct: 188 RVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFK 247
Query: 269 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNE----NHVEVIADEAVTTAAM 324
+++A++ + +++ D+ + +LAA+L +GNI+F + V+V +++ AA
Sbjct: 248 IIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAAS 307
Query: 325 LMGCSSDELMLALSTHKIQAGK----DSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQ 380
+ L +AL I G + I+ + QA SRDALAK +Y LF+W+V +
Sbjct: 308 CLKTDQQSLSIALCYRSISTGVGKRCEVISVPMDCNQAAYSRDALAKALYERLFNWLVSK 367
Query: 381 INKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEY 440
IN + + G I ILDIYGFE F+ NSFEQ IN+ NE+LQQ F K EQEEY
Sbjct: 368 INTIINCTTE-KGPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEY 426
Query: 441 ELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSC 500
+G++W +E+ +N+ LIEKKP+G++SLLDE K+TD TF + + + N
Sbjct: 427 VREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSICKQFEKNPH 486
Query: 501 FKG---ERGRA-----FSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQ-L 551
+ + R+ F ++HYAG+V YD GFL+KN+D L D+I + S + ++Q L
Sbjct: 487 LQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQGL 546
Query: 552 FXXXXXXXXXXXXXXXXXXXLDTQK--QSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNS 609
F D++K ++ G++F+ + L+ L PH++RCIK N
Sbjct: 547 FPPTRPE--------------DSKKRPETAGSQFRNAMNALITTLLACSPHYVRCIKSND 592
Query: 610 KQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDPLS 669
+ G+ +ED V Q R G+LE VR+ R+G+ R+ + F RY +L + S + +
Sbjct: 593 NKQAGVIDEDRVRHQVRYLGLLENVRVRRAGFAGRIEYTRFYNRYKMLCKKTWPSFNGTA 652
Query: 670 ISVA--VLQQFNVLPEMYQVGYTKLYLRS-GQLAALEDRRK 707
+LQQ N+ E ++G TK+++R+ L E++R+
Sbjct: 653 KQATELILQQHNIDKEEIRMGKTKVFIRNPTTLFYFEEKRE 693
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 434 bits (1115), Expect = e-121, Method: Compositional matrix adjust.
Identities = 266/704 (37%), Positives = 392/704 (55%), Gaps = 50/704 (7%)
Query: 36 EGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAY-- 93
EGV D + L+ + E + + N+ R+ D IY+ G V+I+ NPFK + IY I AY
Sbjct: 8 EGVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNG 67
Query: 94 RQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG--- 150
R K PH+YA+A+ AY M NQ +IISGESGAGKTE +K MQ+L +
Sbjct: 68 RYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSP 127
Query: 151 -SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKS 209
E I +L +N +LEAFGNAKT RNDNSSRFGK +E+ F+A G G KI +LLEKS
Sbjct: 128 NGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKS 187
Query: 210 RVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKV-ANDYNYLNQSECLTIDGVDDAQNFH 268
RVV GERS+HIFYQ+ G + L L A Y YL +S C + +DD+ F
Sbjct: 188 RVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFK 247
Query: 269 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNE----NHVEVIADEAVTTAAM 324
+++A++ + +++ D+ + +LAA+L +GNI+F + V+V +++ AA
Sbjct: 248 IIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAAS 307
Query: 325 LMGCSSDELMLALSTHKIQAGKDS----IAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQ 380
+ L +AL I G I+ + QA SRDALAK +Y LF+W+V +
Sbjct: 308 CLKTDQQSLSIALCYRSISTGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSK 367
Query: 381 INKSLEVGKQCT---GRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQ 437
IN + CT G I ILDIYGFE F+ NSFEQ IN+ NE+LQQ F K EQ
Sbjct: 368 INTII----NCTTEKGPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQ 423
Query: 438 EEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGS 497
EEY +G++W +E+ +N+ LIEKKP+G++SLLDE K+TD TF + + +
Sbjct: 424 EEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSICKQFEK 483
Query: 498 NSCFKG---ERGRA-----FSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL 549
N + + R+ F ++HYAG+V YD GFL+KN+D L D+I + S + ++
Sbjct: 484 NPHLQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLV 543
Query: 550 Q-LFXXXXXXXXXXXXXXXXXXXLDTQK--QSVGTKFKGQLFKLMHQLENTRPHFIRCIK 606
Q LF D++K ++ G++F+ + L+ L PH++RCIK
Sbjct: 544 QGLFPPTRPE--------------DSKKRPETAGSQFRNAMNALITTLLACSPHYVRCIK 589
Query: 607 PNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQD 666
N + G+ +ED V Q R G+LE VR+ R+G+ R+ + F RY +L + S +
Sbjct: 590 SNDNKQAGVIDEDRVRHQVRYLGLLENVRVRRAGFAGRIEYTRFYNRYKMLCKKTWPSFN 649
Query: 667 PLSISVA--VLQQFNVLPEMYQVGYTKLYLRS-GQLAALEDRRK 707
+ +LQQ N+ E ++G TK+++R+ L E++R+
Sbjct: 650 GTAKQATELILQQHNIDKEEIRMGKTKVFIRNPTTLFYFEEKRE 693
>pdb|2IX7|C Chain C, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
Length = 58
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 712 AIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTR 749
A IR+QK RG+ R R+ + IT+Q + RG R
Sbjct: 7 ACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQAR 44
>pdb|2P22|C Chain C, Structure Of The Yeast Escrt-i Heterotetramer Core
Length = 192
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 602 IRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMR--HQEFAGRYGVLLS 659
I + KQL +E DL Q+ + +LE RI S Y + H EF+ +YG +
Sbjct: 71 IHAFRDQFKQLEENFE-DLHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYGDIAL 129
Query: 660 EKQLSQD 666
+K+L Q+
Sbjct: 130 KKKLEQN 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,912,998
Number of Sequences: 62578
Number of extensions: 1179696
Number of successful extensions: 3476
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2933
Number of HSP's gapped (non-prelim): 141
length of query: 1048
length of database: 14,973,337
effective HSP length: 109
effective length of query: 939
effective length of database: 8,152,335
effective search space: 7655042565
effective search space used: 7655042565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)