Query 001592
Match_columns 1048
No_of_seqs 393 out of 2252
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 04:38:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001592.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001592hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 2E-204 4E-209 1841.4 68.9 768 16-797 44-869 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 2E-200 4E-205 1819.2 72.9 737 2-751 57-818 (821)
3 cd01383 MYSc_type_VIII Myosin 100.0 1E-191 3E-196 1723.0 67.1 677 29-706 1-677 (677)
4 cd01381 MYSc_type_VII Myosin m 100.0 4E-186 8E-191 1676.3 65.9 660 37-706 1-671 (671)
5 cd01377 MYSc_type_II Myosin mo 100.0 9E-186 2E-190 1681.0 67.6 672 32-706 1-693 (693)
6 cd01380 MYSc_type_V Myosin mot 100.0 1E-185 3E-190 1679.0 66.3 669 37-706 1-691 (691)
7 cd01384 MYSc_type_XI Myosin mo 100.0 9E-185 2E-189 1662.6 65.3 659 36-709 1-673 (674)
8 cd01378 MYSc_type_I Myosin mot 100.0 4E-184 8E-189 1662.4 65.1 657 37-706 1-674 (674)
9 cd01387 MYSc_type_XV Myosin mo 100.0 7E-184 2E-188 1658.1 65.6 668 36-706 1-677 (677)
10 cd01385 MYSc_type_IX Myosin mo 100.0 6E-183 1E-187 1653.5 66.3 670 35-708 6-690 (692)
11 KOG0164 Myosin class I heavy c 100.0 1E-183 2E-188 1542.2 54.1 720 35-791 7-754 (1001)
12 cd01382 MYSc_type_VI Myosin mo 100.0 1E-182 3E-187 1655.6 66.3 664 35-706 3-716 (717)
13 smart00242 MYSc Myosin. Large 100.0 1E-179 2E-184 1630.8 65.4 665 31-707 1-677 (677)
14 KOG0161 Myosin class II heavy 100.0 4E-179 8E-184 1695.1 64.8 750 2-755 47-821 (1930)
15 cd01379 MYSc_type_III Myosin m 100.0 2E-178 4E-183 1602.8 63.0 635 37-706 1-653 (653)
16 cd00124 MYSc Myosin motor doma 100.0 8E-178 2E-182 1618.7 65.4 669 37-706 1-679 (679)
17 KOG0162 Myosin class I heavy c 100.0 7E-178 2E-182 1493.3 49.4 706 33-756 15-739 (1106)
18 cd01386 MYSc_type_XVIII Myosin 100.0 4E-176 8E-181 1601.3 64.5 666 38-706 2-767 (767)
19 KOG0160 Myosin class V heavy c 100.0 1E-171 3E-176 1528.4 62.6 743 30-805 3-753 (862)
20 PF00063 Myosin_head: Myosin h 100.0 1E-171 2E-176 1581.7 59.0 658 38-695 1-689 (689)
21 KOG0163 Myosin class VI heavy 100.0 1E-169 3E-174 1426.7 69.5 744 2-755 21-835 (1259)
22 KOG4229 Myosin VII, myosin IXB 100.0 8E-114 2E-118 1054.8 28.0 746 31-789 56-847 (1062)
23 cd01363 Motor_domain Myosin an 98.7 1.2E-08 2.7E-13 107.0 6.4 89 103-196 8-97 (186)
24 KOG0160 Myosin class V heavy c 98.0 5.9E-05 1.3E-09 93.6 13.3 86 687-788 672-758 (862)
25 KOG0161 Myosin class II heavy 97.8 0.00092 2E-08 89.6 20.9 380 201-656 217-627 (1930)
26 KOG4229 Myosin VII, myosin IXB 97.6 1.6E-05 3.4E-10 100.9 1.0 191 582-791 794-986 (1062)
27 PF00612 IQ: IQ calmodulin-bin 96.9 0.00072 1.6E-08 45.0 2.5 19 772-790 2-20 (21)
28 KOG0520 Uncharacterized conser 96.8 0.00089 1.9E-08 83.5 4.4 45 711-755 811-855 (975)
29 KOG2128 Ras GTPase-activating 96.8 0.012 2.7E-07 75.5 13.6 139 711-858 566-709 (1401)
30 PF00612 IQ: IQ calmodulin-bin 96.7 0.002 4.4E-08 42.8 3.5 20 734-753 2-21 (21)
31 KOG0925 mRNA splicing factor A 96.5 0.0024 5.1E-08 73.7 4.3 57 75-137 23-79 (699)
32 smart00015 IQ Short calmodulin 95.2 0.022 4.9E-07 39.9 3.1 18 735-752 5-22 (26)
33 PF13207 AAA_17: AAA domain; P 95.1 0.016 3.5E-07 55.8 3.0 23 122-144 1-23 (121)
34 smart00015 IQ Short calmodulin 95.0 0.015 3.3E-07 40.8 1.9 21 771-791 3-23 (26)
35 PTZ00014 myosin-A; Provisional 94.9 0.031 6.7E-07 71.1 5.7 43 733-790 777-819 (821)
36 COG5022 Myosin heavy chain [Cy 94.2 1.7 3.7E-05 57.1 18.5 85 710-794 793-889 (1463)
37 PF13238 AAA_18: AAA domain; P 93.8 0.043 9.3E-07 53.0 2.8 22 123-144 1-22 (129)
38 PF13401 AAA_22: AAA domain; P 93.8 0.046 1E-06 53.2 2.9 29 118-146 2-30 (131)
39 PF13191 AAA_16: AAA ATPase do 93.7 0.052 1.1E-06 56.0 3.4 33 115-147 19-51 (185)
40 KOG0163 Myosin class VI heavy 93.7 4.1 8.9E-05 50.0 18.9 32 711-742 814-845 (1259)
41 TIGR03015 pepcterm_ATPase puta 93.5 0.074 1.6E-06 58.8 4.4 28 118-145 41-68 (269)
42 TIGR02322 phosphon_PhnN phosph 93.5 0.055 1.2E-06 56.1 3.2 24 121-144 2-25 (179)
43 cd00009 AAA The AAA+ (ATPases 93.5 0.1 2.2E-06 50.8 4.7 30 116-145 15-44 (151)
44 cd02019 NK Nucleoside/nucleoti 93.2 0.077 1.7E-06 46.4 3.1 22 123-144 2-23 (69)
45 PF00004 AAA: ATPase family as 92.5 0.085 1.8E-06 51.1 2.7 23 123-145 1-23 (132)
46 PRK05480 uridine/cytidine kina 92.5 0.11 2.4E-06 55.4 3.8 27 118-144 4-30 (209)
47 PRK06696 uridine kinase; Valid 92.5 0.17 3.7E-06 54.7 5.2 40 105-146 9-48 (223)
48 cd01131 PilT Pilus retraction 92.5 0.1 2.2E-06 55.5 3.3 25 122-146 3-27 (198)
49 KOG0520 Uncharacterized conser 92.4 0.47 1E-05 60.2 9.5 61 712-791 793-853 (975)
50 PF01583 APS_kinase: Adenylyls 92.3 0.15 3.3E-06 52.0 4.2 30 120-149 2-31 (156)
51 PRK13833 conjugal transfer pro 92.2 0.15 3.2E-06 58.3 4.6 34 111-146 137-170 (323)
52 cd00820 PEPCK_HprK Phosphoenol 92.2 0.12 2.5E-06 49.5 3.1 23 119-141 14-36 (107)
53 cd01918 HprK_C HprK/P, the bif 92.1 0.12 2.6E-06 52.3 3.3 24 120-143 14-37 (149)
54 PRK00300 gmk guanylate kinase; 92.1 0.11 2.3E-06 55.2 3.0 26 119-144 4-29 (205)
55 PF00485 PRK: Phosphoribulokin 92.0 0.1 2.2E-06 55.1 2.8 26 123-148 2-27 (194)
56 PRK05541 adenylylsulfate kinas 92.0 0.13 2.9E-06 53.2 3.5 29 118-146 5-33 (176)
57 cd01129 PulE-GspE PulE/GspE Th 92.0 0.17 3.7E-06 56.3 4.6 35 111-146 72-106 (264)
58 smart00382 AAA ATPases associa 92.0 0.11 2.3E-06 49.9 2.7 28 120-147 2-29 (148)
59 TIGR00150 HI0065_YjeE ATPase, 92.0 0.24 5.2E-06 49.3 5.1 27 118-144 20-46 (133)
60 cd02023 UMPK Uridine monophosp 91.9 0.12 2.6E-06 54.7 3.1 22 123-144 2-23 (198)
61 TIGR00235 udk uridine kinase. 91.8 0.15 3.2E-06 54.5 3.7 27 118-144 4-30 (207)
62 COG0444 DppD ABC-type dipeptid 91.7 0.11 2.4E-06 58.4 2.7 28 118-145 29-56 (316)
63 PRK06762 hypothetical protein; 91.7 0.15 3.3E-06 52.1 3.6 25 120-144 2-26 (166)
64 COG0194 Gmk Guanylate kinase [ 91.6 0.13 2.7E-06 53.7 2.8 25 120-144 4-28 (191)
65 PRK08233 hypothetical protein; 91.6 0.11 2.5E-06 53.6 2.5 24 121-144 4-27 (182)
66 TIGR02173 cyt_kin_arch cytidyl 91.4 0.13 2.9E-06 52.5 2.8 23 122-144 2-24 (171)
67 PTZ00301 uridine kinase; Provi 91.3 0.16 3.4E-06 54.7 3.2 23 123-145 6-28 (210)
68 cd02020 CMPK Cytidine monophos 91.2 0.16 3.5E-06 50.4 3.1 22 123-144 2-23 (147)
69 PRK06547 hypothetical protein; 91.2 0.3 6.6E-06 50.7 5.2 28 117-144 12-39 (172)
70 PRK00131 aroK shikimate kinase 91.2 0.19 4.1E-06 51.4 3.5 26 119-144 3-28 (175)
71 PRK09270 nucleoside triphospha 91.1 0.62 1.3E-05 50.6 7.7 33 117-149 30-62 (229)
72 cd02028 UMPK_like Uridine mono 91.0 0.17 3.7E-06 52.9 3.1 24 123-146 2-25 (179)
73 cd00227 CPT Chloramphenicol (C 91.0 0.19 4.2E-06 52.1 3.5 25 120-144 2-26 (175)
74 PF13245 AAA_19: Part of AAA d 91.0 0.28 6E-06 43.9 4.0 28 119-146 9-36 (76)
75 PRK07261 topology modulation p 91.0 0.17 3.6E-06 52.5 3.0 22 122-143 2-23 (171)
76 cd02025 PanK Pantothenate kina 90.9 0.17 3.7E-06 54.7 3.1 24 123-146 2-25 (220)
77 PF07724 AAA_2: AAA domain (Cd 90.9 0.21 4.4E-06 52.0 3.5 24 122-145 5-28 (171)
78 TIGR03420 DnaA_homol_Hda DnaA 90.8 0.35 7.6E-06 51.9 5.5 38 109-146 27-64 (226)
79 PRK08118 topology modulation p 90.7 0.2 4.3E-06 51.8 3.3 25 121-145 2-26 (167)
80 cd01130 VirB11-like_ATPase Typ 90.7 0.17 3.8E-06 53.0 2.8 26 120-145 25-50 (186)
81 COG0572 Udk Uridine kinase [Nu 90.6 0.21 4.5E-06 53.6 3.3 26 120-145 6-33 (218)
82 PF03668 ATP_bind_2: P-loop AT 90.5 0.18 3.9E-06 56.2 2.8 20 121-140 2-21 (284)
83 PRK08084 DNA replication initi 90.5 0.41 9E-06 52.3 5.6 41 107-147 32-72 (235)
84 KOG2128 Ras GTPase-activating 90.3 2.5 5.3E-05 55.5 12.8 67 714-791 539-612 (1401)
85 TIGR01420 pilT_fam pilus retra 90.2 0.2 4.4E-06 57.9 3.1 35 111-146 114-148 (343)
86 PF05729 NACHT: NACHT domain 90.2 0.25 5.4E-06 49.8 3.4 27 122-148 2-28 (166)
87 PRK10078 ribose 1,5-bisphospho 90.2 0.18 3.9E-06 52.9 2.4 23 121-143 3-25 (186)
88 PRK00889 adenylylsulfate kinas 90.1 0.35 7.7E-06 50.0 4.5 29 119-147 3-31 (175)
89 TIGR02782 TrbB_P P-type conjug 90.1 0.23 4.9E-06 56.4 3.3 27 120-146 132-158 (299)
90 PF12846 AAA_10: AAA-like doma 90.1 0.25 5.5E-06 55.0 3.7 30 120-149 1-30 (304)
91 PRK14737 gmk guanylate kinase; 90.1 0.21 4.5E-06 52.7 2.7 25 120-144 4-28 (186)
92 TIGR01313 therm_gnt_kin carboh 90.0 0.18 3.9E-06 51.4 2.2 22 123-144 1-22 (163)
93 TIGR02928 orc1/cdc6 family rep 89.9 0.34 7.3E-06 56.2 4.6 36 111-146 31-66 (365)
94 cd00071 GMPK Guanosine monopho 89.9 0.2 4.3E-06 50.0 2.3 22 123-144 2-23 (137)
95 cd02024 NRK1 Nicotinamide ribo 89.8 0.22 4.8E-06 52.5 2.7 22 123-144 2-23 (187)
96 PF09755 DUF2046: Uncharacteri 89.7 41 0.00088 38.1 21.1 56 845-900 144-203 (310)
97 TIGR02524 dot_icm_DotB Dot/Icm 89.7 0.24 5.3E-06 57.5 3.1 29 119-147 133-161 (358)
98 PRK14738 gmk guanylate kinase; 89.6 0.27 5.8E-06 52.6 3.2 26 118-143 11-36 (206)
99 PF00437 T2SE: Type II/IV secr 89.5 0.21 4.6E-06 55.5 2.4 28 119-146 126-153 (270)
100 PF00910 RNA_helicase: RNA hel 89.5 0.28 6.1E-06 46.7 2.9 24 123-146 1-24 (107)
101 PRK03846 adenylylsulfate kinas 89.5 0.49 1.1E-05 50.2 5.1 32 117-148 21-52 (198)
102 cd02027 APSK Adenosine 5'-phos 89.4 0.29 6.3E-06 49.5 3.1 24 123-146 2-25 (149)
103 TIGR00554 panK_bact pantothena 89.4 0.57 1.2E-05 52.8 5.7 31 117-147 59-89 (290)
104 PRK14961 DNA polymerase III su 89.3 0.49 1.1E-05 55.2 5.4 52 90-145 7-63 (363)
105 TIGR02525 plasmid_TraJ plasmid 89.2 0.27 5.9E-06 57.3 3.2 27 120-146 149-175 (372)
106 PF03266 NTPase_1: NTPase; In 89.2 0.3 6.4E-06 50.6 3.1 24 123-146 2-25 (168)
107 PRK06217 hypothetical protein; 89.2 0.26 5.7E-06 51.5 2.8 23 122-144 3-25 (183)
108 TIGR03263 guanyl_kin guanylate 89.1 0.23 4.9E-06 51.5 2.1 24 121-144 2-25 (180)
109 PF13671 AAA_33: AAA domain; P 89.0 0.23 5E-06 49.1 2.1 23 123-145 2-24 (143)
110 COG1125 OpuBA ABC-type proline 89.0 0.25 5.5E-06 53.8 2.4 25 122-146 29-53 (309)
111 COG1660 Predicted P-loop-conta 88.9 0.26 5.6E-06 53.7 2.4 19 122-140 3-21 (286)
112 PRK12377 putative replication 88.7 0.7 1.5E-05 51.0 5.7 46 101-148 84-129 (248)
113 COG1102 Cmk Cytidylate kinase 88.7 0.34 7.4E-06 49.4 2.9 23 123-145 3-25 (179)
114 cd01120 RecA-like_NTPases RecA 88.6 0.4 8.8E-06 47.8 3.5 25 123-147 2-26 (165)
115 PRK10751 molybdopterin-guanine 88.5 0.38 8.2E-06 50.1 3.3 27 122-148 8-34 (173)
116 PRK13851 type IV secretion sys 88.5 0.25 5.5E-06 57.0 2.2 26 120-145 162-187 (344)
117 cd00464 SK Shikimate kinase (S 88.5 0.33 7.1E-06 48.7 2.8 23 122-144 1-23 (154)
118 COG0529 CysC Adenylylsulfate k 88.5 0.65 1.4E-05 48.1 4.8 34 116-149 19-52 (197)
119 PRK12608 transcription termina 88.3 0.49 1.1E-05 54.9 4.3 42 105-146 118-159 (380)
120 TIGR01360 aden_kin_iso1 adenyl 88.0 0.4 8.6E-06 49.8 3.1 23 122-144 5-27 (188)
121 PRK08903 DnaA regulatory inact 87.9 0.78 1.7E-05 49.6 5.4 31 118-148 40-70 (227)
122 cd02021 GntK Gluconate kinase 87.9 0.36 7.9E-06 48.4 2.6 21 123-143 2-22 (150)
123 PRK00411 cdc6 cell division co 87.8 0.58 1.3E-05 54.9 4.7 36 111-146 46-81 (394)
124 PRK13900 type IV secretion sys 87.8 0.32 7E-06 55.9 2.5 25 121-145 161-185 (332)
125 PRK14730 coaE dephospho-CoA ki 87.8 0.63 1.4E-05 49.4 4.5 48 123-170 4-56 (195)
126 PF03205 MobB: Molybdopterin g 87.7 0.45 9.8E-06 47.7 3.2 27 122-148 2-28 (140)
127 PRK14527 adenylate kinase; Pro 87.7 0.47 1E-05 49.9 3.5 28 118-145 4-31 (191)
128 PRK04182 cytidylate kinase; Pr 87.7 0.38 8.3E-06 49.5 2.7 23 122-144 2-24 (180)
129 PRK13764 ATPase; Provisional 87.7 0.47 1E-05 58.4 3.9 27 120-146 257-283 (602)
130 PRK07667 uridine kinase; Provi 87.6 0.84 1.8E-05 48.2 5.3 26 121-146 18-43 (193)
131 TIGR02533 type_II_gspE general 87.4 0.52 1.1E-05 57.1 4.0 35 110-145 233-267 (486)
132 PRK04040 adenylate kinase; Pro 87.3 0.5 1.1E-05 49.9 3.4 25 121-145 3-27 (188)
133 PRK11637 AmiB activator; Provi 87.3 4.6 9.9E-05 48.3 11.9 54 824-877 56-109 (428)
134 PRK05057 aroK shikimate kinase 87.2 0.49 1.1E-05 49.1 3.2 25 120-144 4-28 (172)
135 COG1579 Zn-ribbon protein, pos 87.2 36 0.00077 37.3 17.3 80 820-899 94-173 (239)
136 COG4608 AppF ABC-type oligopep 87.1 0.43 9.2E-06 52.7 2.7 32 118-149 37-68 (268)
137 PF03193 DUF258: Protein of un 87.0 0.35 7.5E-06 49.7 1.9 25 119-143 34-58 (161)
138 COG0563 Adk Adenylate kinase a 87.0 0.49 1.1E-05 49.5 3.0 21 123-143 3-23 (178)
139 PRK12402 replication factor C 86.9 0.81 1.8E-05 52.3 5.1 32 115-146 31-62 (337)
140 PHA00729 NTP-binding motif con 86.7 0.97 2.1E-05 49.0 5.2 38 107-145 5-42 (226)
141 PRK06893 DNA replication initi 86.7 1 2.2E-05 49.0 5.5 46 101-148 22-67 (229)
142 PRK09825 idnK D-gluconate kina 86.7 0.56 1.2E-05 48.9 3.3 26 120-145 3-28 (176)
143 cd02029 PRK_like Phosphoribulo 86.6 0.59 1.3E-05 51.9 3.5 24 123-146 2-25 (277)
144 PRK14732 coaE dephospho-CoA ki 86.6 0.5 1.1E-05 50.2 3.0 47 123-170 2-53 (196)
145 PRK14964 DNA polymerase III su 86.6 0.84 1.8E-05 55.1 5.1 54 91-147 5-62 (491)
146 COG3883 Uncharacterized protei 86.5 5.5 0.00012 44.0 10.8 70 820-889 43-112 (265)
147 PRK08727 hypothetical protein; 86.5 1.1 2.3E-05 49.0 5.5 32 117-148 38-69 (233)
148 PF13555 AAA_29: P-loop contai 86.5 0.73 1.6E-05 39.6 3.3 21 122-142 25-45 (62)
149 PRK13894 conjugal transfer ATP 86.4 0.53 1.2E-05 53.9 3.2 27 120-146 148-174 (319)
150 cd03115 SRP The signal recogni 86.4 0.68 1.5E-05 47.7 3.8 27 122-148 2-28 (173)
151 PHA02544 44 clamp loader, smal 86.4 0.59 1.3E-05 53.1 3.6 28 117-144 40-67 (316)
152 PRK11637 AmiB activator; Provi 86.3 6.4 0.00014 47.0 12.4 55 823-877 48-102 (428)
153 PF07475 Hpr_kinase_C: HPr Ser 86.0 0.54 1.2E-05 48.5 2.7 23 120-142 18-40 (171)
154 TIGR01359 UMP_CMP_kin_fam UMP- 86.0 0.57 1.2E-05 48.6 2.9 23 123-145 2-24 (183)
155 PRK05416 glmZ(sRNA)-inactivati 85.9 0.53 1.1E-05 53.1 2.8 21 120-140 6-26 (288)
156 COG2805 PilT Tfp pilus assembl 85.9 0.6 1.3E-05 52.1 3.1 74 61-146 70-151 (353)
157 PRK06761 hypothetical protein; 85.8 0.53 1.2E-05 52.8 2.8 26 121-146 4-29 (282)
158 PRK14733 coaE dephospho-CoA ki 85.8 0.74 1.6E-05 49.3 3.7 51 121-171 7-61 (204)
159 PRK14956 DNA polymerase III su 85.8 0.87 1.9E-05 54.6 4.6 52 91-146 10-66 (484)
160 PF02367 UPF0079: Uncharacteri 85.6 0.66 1.4E-05 45.6 2.9 27 118-144 13-39 (123)
161 COG0802 Predicted ATPase or ki 85.5 1.5 3.2E-05 44.4 5.4 29 118-146 23-51 (149)
162 COG1124 DppF ABC-type dipeptid 85.5 0.64 1.4E-05 50.5 3.0 29 118-146 31-59 (252)
163 PRK09111 DNA polymerase III su 85.5 0.88 1.9E-05 56.4 4.7 32 116-147 42-73 (598)
164 PRK00698 tmk thymidylate kinas 85.4 0.88 1.9E-05 48.0 4.1 28 120-147 3-30 (205)
165 TIGR00176 mobB molybdopterin-g 85.4 0.78 1.7E-05 46.9 3.5 26 123-148 2-27 (155)
166 PRK06645 DNA polymerase III su 85.4 0.99 2.1E-05 54.8 5.0 54 91-147 13-70 (507)
167 KOG0924 mRNA splicing factor A 85.3 0.97 2.1E-05 54.9 4.7 112 103-220 357-481 (1042)
168 PRK15453 phosphoribulokinase; 85.3 0.72 1.6E-05 51.6 3.4 26 119-144 4-29 (290)
169 COG1618 Predicted nucleotide k 85.3 1.7 3.8E-05 44.4 5.8 53 121-204 6-58 (179)
170 TIGR03499 FlhF flagellar biosy 85.2 0.82 1.8E-05 51.4 3.9 45 103-147 169-221 (282)
171 PF07728 AAA_5: AAA domain (dy 85.2 0.65 1.4E-05 45.9 2.8 22 123-144 2-23 (139)
172 PF00625 Guanylate_kin: Guanyl 85.1 0.75 1.6E-05 48.0 3.3 25 120-144 2-26 (183)
173 PRK14528 adenylate kinase; Pro 85.1 0.75 1.6E-05 48.3 3.4 24 121-144 2-25 (186)
174 PRK08356 hypothetical protein; 85.1 0.58 1.3E-05 49.5 2.5 21 121-141 6-26 (195)
175 PRK08116 hypothetical protein; 84.9 1.5 3.2E-05 49.1 5.7 47 101-147 94-141 (268)
176 PRK14531 adenylate kinase; Pro 84.9 0.78 1.7E-05 48.0 3.4 24 121-144 3-26 (183)
177 cd03293 ABC_NrtD_SsuB_transpor 84.9 0.68 1.5E-05 49.8 3.0 26 118-143 28-53 (220)
178 TIGR00152 dephospho-CoA kinase 84.8 0.84 1.8E-05 47.9 3.6 47 123-170 2-54 (188)
179 PRK03839 putative kinase; Prov 84.8 0.73 1.6E-05 47.9 3.1 23 122-144 2-24 (180)
180 PRK00440 rfc replication facto 84.8 1.2 2.7E-05 50.4 5.2 36 110-145 28-63 (319)
181 COG4172 ABC-type uncharacteriz 84.7 0.53 1.1E-05 54.4 2.1 28 120-147 36-63 (534)
182 COG2884 FtsE Predicted ATPase 84.7 0.67 1.4E-05 48.6 2.6 24 120-143 28-51 (223)
183 PRK10436 hypothetical protein; 84.6 0.66 1.4E-05 55.7 3.0 36 110-146 209-244 (462)
184 PF12325 TMF_TATA_bd: TATA ele 84.6 12 0.00025 36.7 11.0 77 820-896 28-110 (120)
185 TIGR01166 cbiO cobalt transpor 84.6 0.75 1.6E-05 48.2 3.1 25 118-142 16-40 (190)
186 KOG0744 AAA+-type ATPase [Post 84.6 0.88 1.9E-05 51.1 3.7 47 101-147 152-204 (423)
187 TIGR02673 FtsE cell division A 84.6 0.74 1.6E-05 49.2 3.1 27 118-144 26-52 (214)
188 TIGR00455 apsK adenylylsulfate 84.6 1.2 2.6E-05 46.5 4.6 29 118-146 16-44 (184)
189 COG1123 ATPase components of v 84.6 0.53 1.1E-05 56.9 2.1 28 119-146 316-343 (539)
190 COG1123 ATPase components of v 84.5 0.56 1.2E-05 56.6 2.3 29 119-147 34-62 (539)
191 TIGR02788 VirB11 P-type DNA tr 84.5 0.58 1.3E-05 53.3 2.3 25 120-144 144-168 (308)
192 PRK15093 antimicrobial peptide 84.5 0.73 1.6E-05 53.0 3.2 27 118-144 31-57 (330)
193 PF00308 Bac_DnaA: Bacterial d 84.4 1.7 3.7E-05 47.0 5.8 41 109-149 21-63 (219)
194 PRK14974 cell division protein 84.4 1.7 3.7E-05 50.1 6.1 31 118-148 138-168 (336)
195 TIGR00960 3a0501s02 Type II (G 84.4 0.76 1.7E-05 49.2 3.1 26 118-143 27-52 (216)
196 KOG0804 Cytoplasmic Zn-finger 84.4 9.5 0.00021 44.6 11.7 71 823-893 376-446 (493)
197 PRK15177 Vi polysaccharide exp 84.3 0.77 1.7E-05 49.3 3.1 27 118-144 11-37 (213)
198 TIGR03574 selen_PSTK L-seryl-t 84.3 0.76 1.6E-05 50.5 3.1 24 123-146 2-25 (249)
199 PF00005 ABC_tran: ABC transpo 84.3 0.69 1.5E-05 45.5 2.5 26 119-144 10-35 (137)
200 PRK14957 DNA polymerase III su 84.3 1.3 2.7E-05 54.4 5.2 54 90-146 7-64 (546)
201 cd01983 Fer4_NifH The Fer4_Nif 84.2 1.1 2.3E-05 40.4 3.6 26 123-148 2-27 (99)
202 PF06005 DUF904: Protein of un 84.2 22 0.00049 31.6 11.5 39 832-870 7-45 (72)
203 PRK11308 dppF dipeptide transp 84.1 0.77 1.7E-05 52.8 3.1 27 118-144 39-65 (327)
204 TIGR02881 spore_V_K stage V sp 84.1 1.1 2.3E-05 49.8 4.2 31 118-148 40-70 (261)
205 PHA02530 pseT polynucleotide k 84.1 0.74 1.6E-05 51.9 2.9 24 121-144 3-26 (300)
206 cd03259 ABC_Carb_Solutes_like 84.0 0.83 1.8E-05 48.8 3.2 27 118-144 24-50 (213)
207 cd03225 ABC_cobalt_CbiO_domain 84.0 0.84 1.8E-05 48.6 3.2 27 118-144 25-51 (211)
208 PF04665 Pox_A32: Poxvirus A32 83.9 0.8 1.7E-05 50.2 3.0 26 121-146 14-39 (241)
209 cd01672 TMPK Thymidine monopho 83.8 0.97 2.1E-05 47.1 3.6 25 123-147 3-27 (200)
210 PF00158 Sigma54_activat: Sigm 83.8 1.2 2.6E-05 46.1 4.2 25 118-142 20-44 (168)
211 PRK13342 recombination factor 83.8 1.2 2.6E-05 52.9 4.7 43 101-144 18-60 (413)
212 PF10481 CENP-F_N: Cenp-F N-te 83.8 18 0.0004 39.7 12.9 36 961-997 169-206 (307)
213 cd03116 MobB Molybdenum is an 83.7 1.2 2.5E-05 45.9 3.9 28 121-148 2-29 (159)
214 PRK14962 DNA polymerase III su 83.7 1.3 2.9E-05 53.4 5.0 52 91-146 6-62 (472)
215 COG1493 HprK Serine kinase of 83.6 0.87 1.9E-05 50.8 3.1 24 121-144 146-169 (308)
216 PRK09473 oppD oligopeptide tra 83.6 0.77 1.7E-05 52.9 2.9 27 118-144 40-66 (330)
217 cd03255 ABC_MJ0796_Lo1CDE_FtsE 83.6 0.87 1.9E-05 48.8 3.1 27 118-144 28-54 (218)
218 cd03260 ABC_PstB_phosphate_tra 83.6 0.9 1.9E-05 49.0 3.2 27 118-144 24-50 (227)
219 PRK15079 oligopeptide ABC tran 83.5 0.83 1.8E-05 52.6 3.1 27 118-144 45-71 (331)
220 COG2804 PulE Type II secretory 83.5 0.84 1.8E-05 54.4 3.1 37 109-147 248-285 (500)
221 PRK04220 2-phosphoglycerate ki 83.5 1.3 2.9E-05 50.0 4.5 28 117-144 89-116 (301)
222 TIGR02449 conserved hypothetic 83.4 13 0.00029 32.3 9.5 56 832-887 3-58 (65)
223 PRK13768 GTPase; Provisional 83.4 1 2.2E-05 49.8 3.6 27 122-148 4-30 (253)
224 COG4619 ABC-type uncharacteriz 83.4 0.82 1.8E-05 47.0 2.6 25 119-143 28-52 (223)
225 PF02736 Myosin_N: Myosin N-te 83.4 1.4 3E-05 34.8 3.3 25 2-26 18-42 (42)
226 TIGR00678 holB DNA polymerase 83.4 1.4 3E-05 46.2 4.4 36 112-147 5-41 (188)
227 TIGR03608 L_ocin_972_ABC putat 83.3 0.9 2E-05 48.2 3.1 25 119-143 23-47 (206)
228 cd03292 ABC_FtsE_transporter F 83.3 0.91 2E-05 48.4 3.1 26 118-143 25-50 (214)
229 cd02034 CooC The accessory pro 83.3 1.2 2.5E-05 43.3 3.5 26 123-148 2-27 (116)
230 PTZ00112 origin recognition co 83.3 2.1 4.6E-05 54.3 6.5 42 104-146 765-807 (1164)
231 cd02022 DPCK Dephospho-coenzym 83.2 1 2.2E-05 47.0 3.3 48 123-171 2-54 (179)
232 PRK10416 signal recognition pa 83.2 1.3 2.7E-05 50.8 4.3 31 118-148 112-142 (318)
233 cd03296 ABC_CysA_sulfate_impor 83.2 0.91 2E-05 49.5 3.1 26 118-143 26-51 (239)
234 cd03229 ABC_Class3 This class 83.2 0.96 2.1E-05 47.0 3.2 27 118-144 24-50 (178)
235 TIGR02880 cbbX_cfxQ probable R 83.2 0.99 2.2E-05 50.8 3.5 28 122-149 60-87 (284)
236 COG4172 ABC-type uncharacteriz 83.2 0.75 1.6E-05 53.2 2.4 30 118-147 311-340 (534)
237 TIGR02868 CydC thiol reductant 83.1 0.61 1.3E-05 57.1 1.9 28 118-145 359-386 (529)
238 smart00072 GuKc Guanylate kina 83.1 0.86 1.9E-05 47.7 2.8 23 122-144 4-26 (184)
239 PF13604 AAA_30: AAA domain; P 83.1 1.6 3.5E-05 46.3 4.9 39 109-148 8-46 (196)
240 cd03258 ABC_MetN_methionine_tr 83.1 0.67 1.5E-05 50.2 2.0 27 118-144 29-55 (233)
241 PRK11022 dppD dipeptide transp 83.0 0.89 1.9E-05 52.3 3.1 27 118-144 31-57 (326)
242 PRK07003 DNA polymerase III su 83.0 2.8 6.1E-05 52.7 7.5 53 90-146 7-64 (830)
243 PRK14963 DNA polymerase III su 83.0 1.3 2.8E-05 54.0 4.5 45 100-147 19-63 (504)
244 PRK02496 adk adenylate kinase; 82.9 0.97 2.1E-05 47.1 3.1 22 123-144 4-25 (184)
245 PRK14734 coaE dephospho-CoA ki 82.9 1.2 2.6E-05 47.4 3.8 48 122-170 3-55 (200)
246 TIGR00064 ftsY signal recognit 82.9 2.3 5E-05 47.6 6.2 31 118-148 70-100 (272)
247 PRK00023 cmk cytidylate kinase 82.9 0.97 2.1E-05 49.1 3.1 26 120-145 4-29 (225)
248 PRK00081 coaE dephospho-CoA ki 82.8 1 2.2E-05 47.7 3.2 50 121-171 3-57 (194)
249 cd03235 ABC_Metallic_Cations A 82.8 0.91 2E-05 48.5 2.8 26 118-143 23-48 (213)
250 PRK06620 hypothetical protein; 82.8 1.6 3.5E-05 47.0 4.8 22 121-142 45-66 (214)
251 PF13173 AAA_14: AAA domain 82.7 1.2 2.5E-05 43.7 3.4 26 120-145 2-27 (128)
252 PRK09112 DNA polymerase III su 82.7 1.7 3.6E-05 50.5 5.2 40 107-146 31-71 (351)
253 PF01695 IstB_IS21: IstB-like 82.7 1.8 3.9E-05 45.3 4.9 30 118-147 45-74 (178)
254 cd02026 PRK Phosphoribulokinas 82.7 0.93 2E-05 50.7 3.0 22 123-144 2-23 (273)
255 cd03224 ABC_TM1139_LivF_branch 82.6 1 2.2E-05 48.4 3.1 25 118-142 24-48 (222)
256 PLN03025 replication factor C 82.6 1.7 3.7E-05 49.7 5.2 35 111-145 25-59 (319)
257 TIGR02902 spore_lonB ATP-depen 82.5 1.6 3.4E-05 53.6 5.1 30 115-144 81-110 (531)
258 PLN02796 D-glycerate 3-kinase 82.5 0.97 2.1E-05 52.0 3.0 24 122-145 102-125 (347)
259 TIGR02538 type_IV_pilB type IV 82.5 0.9 1.9E-05 56.2 3.0 26 120-145 316-341 (564)
260 PRK05342 clpX ATP-dependent pr 82.4 1.6 3.4E-05 51.9 4.8 61 84-144 59-132 (412)
261 cd03256 ABC_PhnC_transporter A 82.4 1 2.2E-05 49.0 3.1 27 118-144 25-51 (241)
262 PRK03731 aroL shikimate kinase 82.4 1.1 2.4E-05 46.0 3.3 25 121-145 3-27 (171)
263 PRK09087 hypothetical protein; 82.4 1.6 3.6E-05 47.4 4.7 25 119-143 43-67 (226)
264 PRK14969 DNA polymerase III su 82.3 1.6 3.5E-05 53.4 5.1 53 91-146 8-64 (527)
265 COG2274 SunT ABC-type bacterio 82.2 0.94 2E-05 57.2 3.1 28 118-145 497-524 (709)
266 PRK10646 ADP-binding protein; 82.2 2.4 5.3E-05 43.2 5.5 25 120-144 28-52 (153)
267 COG2204 AtoC Response regulato 82.2 1.3 2.8E-05 52.9 4.0 64 118-186 162-232 (464)
268 TIGR03864 PQQ_ABC_ATP ABC tran 82.2 1.1 2.3E-05 48.9 3.2 26 118-143 25-50 (236)
269 COG1428 Deoxynucleoside kinase 82.2 0.83 1.8E-05 48.7 2.1 44 120-169 4-47 (216)
270 PF01637 Arch_ATPase: Archaeal 82.1 0.96 2.1E-05 48.2 2.7 34 111-144 11-44 (234)
271 TIGR02315 ABC_phnC phosphonate 82.1 1.1 2.3E-05 49.0 3.1 26 118-143 26-51 (243)
272 cd03268 ABC_BcrA_bacitracin_re 82.0 1.1 2.4E-05 47.6 3.2 26 118-143 24-49 (208)
273 cd03297 ABC_ModC_molybdenum_tr 82.0 1.1 2.3E-05 48.0 3.1 26 118-144 22-47 (214)
274 cd01124 KaiC KaiC is a circadi 82.0 1.2 2.7E-05 46.1 3.4 27 122-148 1-27 (187)
275 cd03223 ABCD_peroxisomal_ALDP 81.9 1.2 2.5E-05 45.9 3.1 27 118-144 25-51 (166)
276 cd03265 ABC_DrrA DrrA is the A 81.9 1.1 2.4E-05 48.1 3.2 25 118-142 24-48 (220)
277 PRK05537 bifunctional sulfate 81.9 2.5 5.3E-05 52.3 6.4 44 101-146 375-418 (568)
278 PRK11124 artP arginine transpo 81.8 1.1 2.4E-05 48.9 3.2 26 118-143 26-51 (242)
279 cd03219 ABC_Mj1267_LivG_branch 81.8 1 2.3E-05 48.8 2.9 26 118-143 24-49 (236)
280 PRK13947 shikimate kinase; Pro 81.8 1.2 2.6E-05 45.6 3.2 23 122-144 3-25 (171)
281 PRK14530 adenylate kinase; Pro 81.8 1.1 2.4E-05 48.1 3.1 24 122-145 5-28 (215)
282 PRK05439 pantothenate kinase; 81.8 2.2 4.9E-05 48.5 5.6 31 117-147 83-113 (311)
283 cd03269 ABC_putative_ATPase Th 81.8 1.1 2.5E-05 47.6 3.2 26 118-143 24-49 (210)
284 PF13479 AAA_24: AAA domain 81.7 0.95 2.1E-05 48.7 2.5 22 119-140 2-23 (213)
285 TIGR01184 ntrCD nitrate transp 81.7 1.1 2.4E-05 48.5 3.1 26 119-144 10-35 (230)
286 cd03266 ABC_NatA_sodium_export 81.7 1.1 2.5E-05 47.8 3.1 25 118-142 29-53 (218)
287 TIGR02640 gas_vesic_GvpN gas v 81.7 1.8 4E-05 48.0 4.9 41 100-143 4-44 (262)
288 PF01580 FtsK_SpoIIIE: FtsK/Sp 81.7 1.1 2.5E-05 47.5 3.1 26 122-147 40-65 (205)
289 COG1136 SalX ABC-type antimicr 81.6 0.97 2.1E-05 49.0 2.5 22 119-140 30-51 (226)
290 cd03262 ABC_HisP_GlnQ_permease 81.6 1.2 2.5E-05 47.6 3.1 26 118-143 24-49 (213)
291 PLN02348 phosphoribulokinase 81.6 1.9 4.1E-05 50.5 5.0 29 118-146 47-75 (395)
292 cd03226 ABC_cobalt_CbiO_domain 81.6 1.1 2.5E-05 47.5 3.0 26 118-143 24-49 (205)
293 PRK08154 anaerobic benzoate ca 81.5 1.9 4E-05 49.3 4.9 43 102-144 115-157 (309)
294 PRK13539 cytochrome c biogenes 81.5 1.2 2.6E-05 47.5 3.2 26 118-143 26-51 (207)
295 TIGR00017 cmk cytidylate kinas 81.5 1.2 2.7E-05 48.0 3.3 24 122-145 4-27 (217)
296 cd03238 ABC_UvrA The excision 81.5 1.2 2.7E-05 46.5 3.1 24 118-141 19-42 (176)
297 PF06414 Zeta_toxin: Zeta toxi 81.5 1.2 2.6E-05 47.2 3.2 29 117-145 12-40 (199)
298 PRK05428 HPr kinase/phosphoryl 81.5 1.1 2.4E-05 50.7 3.0 24 120-143 146-169 (308)
299 cd03230 ABC_DR_subfamily_A Thi 81.4 1.2 2.7E-05 46.0 3.1 26 118-143 24-49 (173)
300 TIGR03238 dnd_assoc_3 dnd syst 81.3 1.5 3.2E-05 52.4 4.1 37 102-138 9-50 (504)
301 PRK13695 putative NTPase; Prov 81.3 1.3 2.7E-05 45.9 3.2 24 123-146 3-26 (174)
302 PRK11176 lipid transporter ATP 81.3 0.94 2E-05 56.2 2.6 29 118-146 367-395 (582)
303 TIGR00972 3a0107s01c2 phosphat 81.3 1.2 2.6E-05 48.8 3.1 26 118-143 25-50 (247)
304 PRK10908 cell division protein 81.2 1.2 2.6E-05 47.9 3.2 26 118-143 26-51 (222)
305 cd03245 ABCC_bacteriocin_expor 81.2 1.2 2.6E-05 47.7 3.1 26 118-143 28-53 (220)
306 PRK13729 conjugal transfer pil 81.1 9.4 0.0002 45.5 10.4 55 842-900 75-129 (475)
307 TIGR01978 sufC FeS assembly AT 81.1 1.2 2.6E-05 48.5 3.1 26 118-143 24-49 (243)
308 TIGR03410 urea_trans_UrtE urea 81.1 1.2 2.6E-05 48.1 3.1 27 118-144 24-50 (230)
309 PF00448 SRP54: SRP54-type pro 81.0 1.4 3.1E-05 46.8 3.5 28 120-147 1-28 (196)
310 TIGR00041 DTMP_kinase thymidyl 80.9 1.5 3.2E-05 46.1 3.6 27 120-146 3-29 (195)
311 PRK10584 putative ABC transpor 80.9 1.3 2.7E-05 47.9 3.1 27 118-144 34-60 (228)
312 PRK04195 replication factor C 80.9 1.6 3.4E-05 53.0 4.3 27 118-144 37-63 (482)
313 TIGR02211 LolD_lipo_ex lipopro 80.8 1.3 2.8E-05 47.6 3.1 26 118-143 29-54 (221)
314 cd03294 ABC_Pro_Gly_Bertaine T 80.7 1.3 2.7E-05 49.5 3.1 26 118-143 48-73 (269)
315 PLN02318 phosphoribulokinase/u 80.7 1.9 4E-05 52.9 4.7 43 101-143 45-88 (656)
316 PRK09435 membrane ATPase/prote 80.7 2.8 6.1E-05 48.2 6.0 32 117-148 53-84 (332)
317 cd03218 ABC_YhbG The ABC trans 80.7 1.3 2.8E-05 47.9 3.2 26 118-143 24-49 (232)
318 PRK14950 DNA polymerase III su 80.7 1.9 4.2E-05 53.6 5.0 45 100-147 21-65 (585)
319 PF10168 Nup88: Nuclear pore c 80.7 6 0.00013 50.2 9.4 79 822-900 586-664 (717)
320 PRK14959 DNA polymerase III su 80.7 1.8 4E-05 53.6 4.7 53 90-146 7-64 (624)
321 PRK11248 tauB taurine transpor 80.7 1.3 2.8E-05 49.0 3.1 27 118-144 25-51 (255)
322 TIGR02903 spore_lon_C ATP-depe 80.6 1.9 4.2E-05 53.8 5.0 35 112-146 167-201 (615)
323 PF12774 AAA_6: Hydrolytic ATP 80.6 1.5 3.3E-05 47.8 3.6 40 106-145 17-57 (231)
324 PRK11629 lolD lipoprotein tran 80.6 1.3 2.8E-05 48.1 3.1 26 118-143 33-58 (233)
325 cd03270 ABC_UvrA_I The excisio 80.6 1.3 2.8E-05 48.0 3.1 21 118-138 19-39 (226)
326 cd03301 ABC_MalK_N The N-termi 80.6 1.3 2.9E-05 47.2 3.2 27 118-144 24-50 (213)
327 COG0237 CoaE Dephospho-CoA kin 80.6 1.5 3.2E-05 46.9 3.4 50 122-173 4-59 (201)
328 TIGR02858 spore_III_AA stage I 80.5 1.4 3E-05 49.3 3.3 41 105-145 96-136 (270)
329 PF14532 Sigma54_activ_2: Sigm 80.5 0.82 1.8E-05 45.4 1.4 26 118-143 19-44 (138)
330 TIGR02770 nickel_nikD nickel i 80.4 1.3 2.8E-05 48.0 3.0 27 118-144 10-36 (230)
331 PRK14242 phosphate transporter 80.4 1.3 2.8E-05 48.7 3.1 26 118-143 30-55 (253)
332 PRK13541 cytochrome c biogenes 80.3 1.4 3E-05 46.5 3.1 26 118-143 24-49 (195)
333 PRK01184 hypothetical protein; 80.3 1.2 2.6E-05 46.3 2.7 19 122-140 3-21 (184)
334 cd03237 ABC_RNaseL_inhibitor_d 80.3 1.3 2.9E-05 48.6 3.1 26 119-144 24-49 (246)
335 PRK13946 shikimate kinase; Pro 80.3 1.4 3.1E-05 46.1 3.2 26 119-144 9-34 (184)
336 PF12718 Tropomyosin_1: Tropom 80.3 22 0.00048 35.9 11.5 15 960-974 106-120 (143)
337 PRK06526 transposase; Provisio 80.3 1.5 3.3E-05 48.5 3.6 30 119-148 97-126 (254)
338 cd03222 ABC_RNaseL_inhibitor T 80.2 1.3 2.9E-05 46.2 2.9 28 118-145 23-50 (177)
339 COG1126 GlnQ ABC-type polar am 80.2 1.4 3E-05 47.2 3.0 22 119-140 27-48 (240)
340 TIGR03752 conj_TIGR03752 integ 80.1 22 0.00048 42.3 13.0 84 817-900 54-141 (472)
341 PRK00625 shikimate kinase; Pro 80.1 1.4 3.1E-05 45.8 3.1 23 122-144 2-24 (173)
342 PRK13645 cbiO cobalt transport 80.1 1.3 2.8E-05 49.9 3.0 27 118-144 35-61 (289)
343 cd03234 ABCG_White The White s 80.0 1.4 3.1E-05 47.5 3.2 27 118-144 31-57 (226)
344 cd03261 ABC_Org_Solvent_Resist 80.0 1.4 3E-05 47.8 3.1 26 118-143 24-49 (235)
345 PRK14958 DNA polymerase III su 80.0 2.1 4.7E-05 52.1 5.0 53 90-146 7-64 (509)
346 PRK09039 hypothetical protein; 80.0 17 0.00037 42.1 12.1 38 952-990 235-272 (343)
347 PRK10247 putative ABC transpor 79.9 1.4 3.1E-05 47.6 3.2 25 118-142 31-55 (225)
348 PRK13540 cytochrome c biogenes 79.9 1.5 3.2E-05 46.5 3.2 26 118-143 25-50 (200)
349 cd03267 ABC_NatA_like Similar 79.9 1.4 3E-05 48.1 3.1 25 118-142 45-69 (236)
350 PRK11247 ssuB aliphatic sulfon 79.9 1.4 3E-05 48.9 3.1 27 118-144 36-62 (257)
351 cd03298 ABC_ThiQ_thiamine_tran 79.8 1.4 3.1E-05 46.9 3.1 26 118-143 22-47 (211)
352 TIGR00101 ureG urease accessor 79.8 1.6 3.5E-05 46.4 3.5 26 121-146 2-27 (199)
353 PF06785 UPF0242: Uncharacteri 79.8 50 0.0011 37.4 14.7 76 818-893 130-212 (401)
354 cd00046 DEXDc DEAD-like helica 79.7 1.6 3.5E-05 41.6 3.2 26 122-147 2-27 (144)
355 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 79.7 1.4 3.1E-05 47.6 3.0 26 118-143 46-71 (224)
356 TIGR00679 hpr-ser Hpr(Ser) kin 79.7 1.3 2.9E-05 49.9 2.9 24 120-143 146-169 (304)
357 PRK13538 cytochrome c biogenes 79.6 1.5 3.2E-05 46.6 3.1 26 119-144 26-51 (204)
358 COG0630 VirB11 Type IV secreto 79.6 1.7 3.7E-05 49.6 3.8 26 120-145 143-168 (312)
359 PRK14247 phosphate ABC transpo 79.6 1.4 3.1E-05 48.2 3.1 26 118-143 27-52 (250)
360 CHL00081 chlI Mg-protoporyphyr 79.6 2.3 5.1E-05 49.2 4.9 31 117-147 35-65 (350)
361 PRK08472 fliI flagellum-specif 79.6 1.4 3E-05 52.4 3.1 42 103-144 140-181 (434)
362 PRK14251 phosphate ABC transpo 79.6 1.5 3.2E-05 48.2 3.1 27 118-144 28-54 (251)
363 PRK14248 phosphate ABC transpo 79.5 1.5 3.2E-05 48.8 3.1 26 118-143 45-70 (268)
364 cd03232 ABC_PDR_domain2 The pl 79.5 1.5 3.2E-05 46.2 3.0 24 118-141 31-54 (192)
365 PRK07429 phosphoribulokinase; 79.4 1.4 3E-05 50.7 3.0 26 119-144 7-32 (327)
366 TIGR00382 clpX endopeptidase C 79.3 2.2 4.8E-05 50.5 4.7 24 121-144 117-140 (413)
367 cd03250 ABCC_MRP_domain1 Domai 79.3 1.5 3.4E-05 46.4 3.1 27 118-144 29-55 (204)
368 cd03214 ABC_Iron-Siderophores_ 79.2 1.6 3.5E-05 45.4 3.2 27 118-144 23-49 (180)
369 cd03247 ABCC_cytochrome_bd The 79.2 1.6 3.5E-05 45.3 3.1 27 118-144 26-52 (178)
370 cd03257 ABC_NikE_OppD_transpor 79.2 1.5 3.3E-05 47.2 3.0 26 118-143 29-54 (228)
371 PRK10419 nikE nickel transport 79.2 1.5 3.2E-05 48.9 3.1 25 118-142 36-60 (268)
372 PF06005 DUF904: Protein of un 79.2 24 0.00052 31.3 9.9 47 820-866 9-55 (72)
373 PRK06921 hypothetical protein; 79.1 3.1 6.7E-05 46.4 5.5 29 119-147 116-144 (266)
374 PRK05642 DNA replication initi 79.1 3 6.5E-05 45.5 5.4 27 121-147 46-72 (234)
375 cd03263 ABC_subfamily_A The AB 79.1 1.6 3.4E-05 46.9 3.2 26 118-143 26-51 (220)
376 cd03283 ABC_MutS-like MutS-lik 79.1 1.3 2.9E-05 47.1 2.5 22 120-141 25-46 (199)
377 cd01428 ADK Adenylate kinase ( 79.0 1.5 3.2E-05 45.8 2.9 22 123-144 2-23 (194)
378 PF11559 ADIP: Afadin- and alp 79.0 30 0.00065 35.0 12.2 60 823-882 60-119 (151)
379 PF03215 Rad17: Rad17 cell cyc 79.0 2.4 5.2E-05 51.7 4.9 36 109-144 33-69 (519)
380 PRK09493 glnQ glutamine ABC tr 79.0 1.6 3.4E-05 47.6 3.1 27 118-144 25-51 (240)
381 PRK14955 DNA polymerase III su 79.0 2.5 5.4E-05 49.9 5.0 37 110-146 27-64 (397)
382 PRK00279 adk adenylate kinase; 78.9 1.6 3.4E-05 46.9 3.1 24 122-145 2-25 (215)
383 KOG3354 Gluconate kinase [Carb 78.9 1.7 3.7E-05 44.0 3.0 25 121-145 13-37 (191)
384 PRK13648 cbiO cobalt transport 78.8 1.6 3.4E-05 48.6 3.1 26 118-143 33-58 (269)
385 cd01394 radB RadB. The archaea 78.8 2.2 4.9E-05 45.6 4.2 36 111-146 8-45 (218)
386 TIGR00635 ruvB Holliday juncti 78.8 3 6.4E-05 47.1 5.4 27 118-144 28-54 (305)
387 PRK14250 phosphate ABC transpo 78.7 1.6 3.5E-05 47.7 3.1 26 118-143 27-52 (241)
388 cd03252 ABCC_Hemolysin The ABC 78.7 1.6 3.4E-05 47.5 3.1 27 118-144 26-52 (237)
389 cd03215 ABC_Carb_Monos_II This 78.7 1.6 3.5E-05 45.5 3.0 27 118-144 24-50 (182)
390 cd03254 ABCC_Glucan_exporter_l 78.7 1.6 3.5E-05 47.1 3.1 26 118-143 27-52 (229)
391 cd03290 ABCC_SUR1_N The SUR do 78.6 1.6 3.6E-05 46.7 3.1 26 118-143 25-50 (218)
392 PF13177 DNA_pol3_delta2: DNA 78.6 3.5 7.7E-05 42.3 5.4 35 115-149 14-48 (162)
393 TIGR01277 thiQ thiamine ABC tr 78.6 1.6 3.5E-05 46.7 3.0 27 118-144 22-48 (213)
394 TIGR02237 recomb_radB DNA repa 78.6 2.3 5.1E-05 45.1 4.3 28 119-146 11-38 (209)
395 cd03246 ABCC_Protease_Secretio 78.5 1.8 3.8E-05 44.8 3.2 27 118-144 26-52 (173)
396 TIGR02323 CP_lyasePhnK phospho 78.5 1.6 3.4E-05 48.0 3.0 26 118-143 27-52 (253)
397 TIGR00968 3a0106s01 sulfate AB 78.5 1.7 3.6E-05 47.4 3.2 27 118-144 24-50 (237)
398 PRK14267 phosphate ABC transpo 78.5 1.6 3.6E-05 47.9 3.1 26 118-143 28-53 (253)
399 PRK05563 DNA polymerase III su 78.4 2.6 5.6E-05 52.1 5.1 45 100-147 21-65 (559)
400 TIGR01351 adk adenylate kinase 78.4 1.6 3.4E-05 46.7 2.8 22 123-144 2-23 (210)
401 PRK05201 hslU ATP-dependent pr 78.4 2.9 6.2E-05 49.4 5.1 25 120-144 50-74 (443)
402 COG4778 PhnL ABC-type phosphon 78.4 1.6 3.4E-05 45.0 2.6 22 119-140 36-57 (235)
403 TIGR03005 ectoine_ehuA ectoine 78.4 1.7 3.6E-05 47.9 3.1 26 118-143 24-49 (252)
404 cd03216 ABC_Carb_Monos_I This 78.4 1.7 3.7E-05 44.5 3.0 26 118-143 24-49 (163)
405 PRK07994 DNA polymerase III su 78.4 2.8 6E-05 52.4 5.3 53 90-146 7-64 (647)
406 PRK11264 putative amino-acid A 78.4 1.7 3.7E-05 47.7 3.2 27 118-144 27-53 (250)
407 TIGR01189 ccmA heme ABC export 78.3 1.8 3.8E-05 45.8 3.2 25 119-143 25-49 (198)
408 cd03236 ABC_RNaseL_inhibitor_d 78.3 1.2 2.7E-05 49.2 2.1 31 118-148 24-54 (255)
409 PRK10744 pstB phosphate transp 78.3 1.6 3.6E-05 48.2 3.1 27 118-144 37-63 (260)
410 PRK13949 shikimate kinase; Pro 78.3 1.8 3.8E-05 44.9 3.1 24 122-145 3-26 (169)
411 PLN02165 adenylate isopentenyl 78.2 1.9 4.1E-05 49.4 3.6 31 113-143 36-66 (334)
412 PRK14273 phosphate ABC transpo 78.2 1.7 3.7E-05 47.8 3.1 27 118-144 31-57 (254)
413 cd03295 ABC_OpuCA_Osmoprotecti 78.2 1.7 3.7E-05 47.4 3.2 25 118-142 25-49 (242)
414 TIGR02324 CP_lyasePhnL phospho 78.2 1.7 3.7E-05 46.7 3.1 27 118-144 32-58 (224)
415 cd01128 rho_factor Transcripti 78.2 1.4 2.9E-05 48.8 2.3 37 109-145 5-41 (249)
416 PRK11300 livG leucine/isoleuci 78.1 1.7 3.7E-05 47.8 3.1 27 118-144 29-55 (255)
417 PRK10418 nikD nickel transport 78.1 1.7 3.7E-05 47.9 3.1 27 118-144 27-53 (254)
418 PRK14238 phosphate transporter 78.1 1.7 3.6E-05 48.5 3.1 27 118-144 48-74 (271)
419 PRK14949 DNA polymerase III su 78.1 2.7 5.9E-05 53.9 5.1 52 91-146 8-64 (944)
420 cd03231 ABC_CcmA_heme_exporter 78.0 1.8 3.8E-05 46.0 3.1 26 118-143 24-49 (201)
421 cd03112 CobW_like The function 78.0 1.5 3.3E-05 44.8 2.5 22 122-143 2-23 (158)
422 cd03213 ABCG_EPDR ABCG transpo 78.0 1.8 3.8E-05 45.8 3.1 27 118-144 33-59 (194)
423 PRK07952 DNA replication prote 78.0 2.1 4.5E-05 47.2 3.7 29 120-148 99-127 (244)
424 cd03228 ABCC_MRP_Like The MRP 78.0 1.9 4E-05 44.5 3.2 27 118-144 26-52 (171)
425 PF11932 DUF3450: Protein of u 77.9 31 0.00067 38.1 12.9 66 817-882 51-116 (251)
426 PRK14532 adenylate kinase; Pro 77.9 1.6 3.5E-05 45.5 2.8 23 122-144 2-24 (188)
427 COG1474 CDC6 Cdc6-related prot 77.9 2.7 5.8E-05 49.1 4.7 40 110-149 32-71 (366)
428 PRK13632 cbiO cobalt transport 77.8 1.7 3.8E-05 48.4 3.1 27 118-144 33-59 (271)
429 cd03233 ABC_PDR_domain1 The pl 77.8 1.8 3.8E-05 46.1 3.0 27 118-144 31-57 (202)
430 PRK11174 cysteine/glutathione 77.8 1.2 2.7E-05 55.2 2.1 27 118-144 374-400 (588)
431 PRK14240 phosphate transporter 77.8 1.8 3.8E-05 47.5 3.1 26 118-143 27-52 (250)
432 KOG0971 Microtubule-associated 77.8 1E+02 0.0022 39.4 17.8 79 822-900 969-1051(1243)
433 PRK13657 cyclic beta-1,2-gluca 77.8 1.3 2.7E-05 55.2 2.2 29 118-146 359-387 (588)
434 cd03244 ABCC_MRP_domain2 Domai 77.6 1.9 4E-05 46.3 3.2 27 118-144 28-54 (221)
435 PRK06851 hypothetical protein; 77.6 2.6 5.6E-05 49.1 4.5 31 117-147 27-57 (367)
436 PRK13646 cbiO cobalt transport 77.6 1.8 3.8E-05 48.8 3.1 27 118-144 31-57 (286)
437 TIGR03740 galliderm_ABC gallid 77.6 1.9 4.1E-05 46.5 3.2 26 118-143 24-49 (223)
438 PRK13543 cytochrome c biogenes 77.5 1.8 4E-05 46.3 3.1 26 118-143 35-60 (214)
439 TIGR02203 MsbA_lipidA lipid A 77.5 1.5 3.2E-05 54.3 2.7 29 118-146 356-384 (571)
440 PRK14269 phosphate ABC transpo 77.5 1.9 4E-05 47.3 3.2 25 118-142 26-50 (246)
441 PF13086 AAA_11: AAA domain; P 77.5 2.5 5.4E-05 44.9 4.1 33 110-144 9-41 (236)
442 PRK05896 DNA polymerase III su 77.4 3.2 7E-05 51.2 5.4 54 90-147 7-65 (605)
443 PRK10771 thiQ thiamine transpo 77.4 1.8 3.9E-05 46.9 3.0 26 118-143 23-48 (232)
444 PRK13638 cbiO cobalt transport 77.4 1.7 3.8E-05 48.4 2.9 26 118-143 25-50 (271)
445 PRK09544 znuC high-affinity zi 77.4 1.9 4E-05 47.6 3.1 27 118-144 28-54 (251)
446 cd03221 ABCF_EF-3 ABCF_EF-3 E 77.3 1.9 4.1E-05 43.3 2.9 26 118-143 24-49 (144)
447 PRK09183 transposase/IS protei 77.3 2.2 4.8E-05 47.4 3.7 27 120-146 102-128 (259)
448 PRK06835 DNA replication prote 77.3 3.9 8.4E-05 47.1 5.8 30 119-148 182-211 (329)
449 TIGR01288 nodI ATP-binding ABC 77.3 1.8 4E-05 49.1 3.1 27 118-144 28-54 (303)
450 PRK14263 phosphate ABC transpo 77.3 1.9 4.1E-05 47.9 3.1 27 118-144 32-58 (261)
451 cd00879 Sar1 Sar1 subfamily. 77.2 3.4 7.3E-05 42.9 4.9 33 108-140 7-39 (190)
452 PRK10884 SH3 domain-containing 77.2 26 0.00056 37.6 11.5 49 830-878 119-167 (206)
453 PLN02200 adenylate kinase fami 77.2 2.3 5E-05 46.5 3.7 26 119-144 42-67 (234)
454 TIGR03771 anch_rpt_ABC anchore 77.2 1.9 4.1E-05 46.5 3.1 26 119-144 5-30 (223)
455 TIGR02204 MsbA_rel ABC transpo 77.2 1.6 3.4E-05 54.1 2.8 28 118-145 364-391 (576)
456 PRK10575 iron-hydroxamate tran 77.2 1.7 3.8E-05 48.2 2.9 26 118-143 35-60 (265)
457 PRK14274 phosphate ABC transpo 77.2 1.9 4.1E-05 47.6 3.2 27 118-144 36-62 (259)
458 PRK13975 thymidylate kinase; P 77.1 2 4.2E-05 45.1 3.1 24 121-144 3-26 (196)
459 cd04155 Arl3 Arl3 subfamily. 77.1 2.6 5.6E-05 42.9 3.9 30 112-141 6-35 (173)
460 cd03249 ABC_MTABC3_MDL1_MDL2 M 77.1 1.9 4E-05 47.0 3.0 27 118-144 27-53 (238)
461 KOG0976 Rho/Rac1-interacting s 77.1 49 0.0011 41.4 14.7 143 820-1028 268-430 (1265)
462 PRK14960 DNA polymerase III su 77.1 2.9 6.2E-05 52.1 4.8 52 91-146 7-63 (702)
463 PRK10790 putative multidrug tr 77.0 1.4 3.1E-05 54.7 2.4 27 118-144 365-391 (592)
464 PRK14255 phosphate ABC transpo 77.0 1.9 4.1E-05 47.3 3.1 25 118-142 29-53 (252)
465 PRK14722 flhF flagellar biosyn 77.0 2.3 4.9E-05 49.7 3.8 27 119-145 136-162 (374)
466 TIGR00959 ffh signal recogniti 77.0 2.4 5.2E-05 50.5 4.1 29 118-146 97-125 (428)
467 PRK10619 histidine/lysine/argi 77.0 1.9 4.2E-05 47.5 3.1 27 118-144 29-55 (257)
468 COG4107 PhnK ABC-type phosphon 77.0 1.4 3E-05 45.5 1.8 25 120-144 32-56 (258)
469 CHL00181 cbbX CbbX; Provisiona 76.9 2.2 4.7E-05 48.2 3.6 27 122-148 61-87 (287)
470 cd03248 ABCC_TAP TAP, the Tran 76.9 2 4.3E-05 46.3 3.1 27 118-144 38-64 (226)
471 PRK12339 2-phosphoglycerate ki 76.9 1.8 4E-05 46.0 2.8 24 121-144 4-27 (197)
472 PRK14493 putative bifunctional 76.9 2.4 5.1E-05 47.6 3.8 27 122-148 3-29 (274)
473 PRK14237 phosphate transporter 76.8 2 4.3E-05 47.8 3.2 26 118-143 44-69 (267)
474 PF07926 TPR_MLP1_2: TPR/MLP1/ 76.8 33 0.00072 34.0 11.5 55 845-899 61-115 (132)
475 PRK13341 recombination factor 76.8 2.8 6.1E-05 53.2 4.8 43 101-144 34-76 (725)
476 COG1703 ArgK Putative periplas 76.8 8 0.00017 43.5 7.7 66 105-170 35-144 (323)
477 TIGR03411 urea_trans_UrtD urea 76.8 2 4.3E-05 46.9 3.1 27 118-144 26-52 (242)
478 TIGR03878 thermo_KaiC_2 KaiC d 76.8 2.6 5.5E-05 46.8 4.0 28 119-146 35-62 (259)
479 PRK10865 protein disaggregatio 76.8 2.6 5.7E-05 54.7 4.7 25 121-145 599-623 (857)
480 PRK11701 phnK phosphonate C-P 76.7 1.9 4.1E-05 47.6 3.0 26 118-143 30-55 (258)
481 cd03114 ArgK-like The function 76.7 2.5 5.4E-05 42.8 3.6 26 123-148 2-27 (148)
482 PF08433 KTI12: Chromatin asso 76.7 2.1 4.5E-05 47.9 3.3 26 122-147 3-28 (270)
483 PRK08699 DNA polymerase III su 76.7 3.3 7.1E-05 47.6 5.0 39 109-147 8-48 (325)
484 PRK14952 DNA polymerase III su 76.7 3 6.5E-05 51.6 4.9 45 100-147 18-62 (584)
485 TIGR01188 drrA daunorubicin re 76.6 2 4.3E-05 48.8 3.2 27 118-144 17-43 (302)
486 PRK13548 hmuV hemin importer A 76.6 1.9 4.2E-05 47.6 3.0 26 118-143 26-51 (258)
487 cd03369 ABCC_NFT1 Domain 2 of 76.6 2.1 4.5E-05 45.5 3.2 27 118-144 32-58 (207)
488 COG3839 MalK ABC-type sugar tr 76.6 1.7 3.6E-05 50.0 2.5 20 121-140 30-49 (338)
489 PRK11144 modC molybdate transp 76.6 1.9 4.2E-05 50.0 3.1 25 118-142 22-46 (352)
490 PRK12323 DNA polymerase III su 76.6 3.2 7E-05 51.5 5.0 53 91-146 8-64 (700)
491 COG1855 ATPase (PilT family) [ 76.5 2.6 5.6E-05 49.5 4.0 44 104-149 249-292 (604)
492 cd03264 ABC_drug_resistance_li 76.5 1.8 3.8E-05 46.2 2.6 22 122-143 27-48 (211)
493 PF12775 AAA_7: P-loop contain 76.5 3.7 7.9E-05 46.0 5.2 41 101-142 15-55 (272)
494 cd00267 ABC_ATPase ABC (ATP-bi 76.5 2.1 4.6E-05 43.3 3.1 24 118-141 23-46 (157)
495 PRK11831 putative ABC transpor 76.5 2 4.3E-05 47.9 3.1 26 118-143 31-56 (269)
496 COG1936 Predicted nucleotide k 76.5 1.8 3.9E-05 44.8 2.4 19 123-141 3-21 (180)
497 PF13476 AAA_23: AAA domain; P 76.5 2.3 5E-05 44.2 3.5 25 120-144 19-43 (202)
498 PRK08451 DNA polymerase III su 76.5 3.4 7.4E-05 50.5 5.2 53 91-146 6-62 (535)
499 PRK15056 manganese/iron transp 76.5 2 4.3E-05 47.9 3.1 25 119-143 32-56 (272)
500 cd03217 ABC_FeS_Assembly ABC-t 76.5 2.1 4.5E-05 45.4 3.1 26 118-143 24-49 (200)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.7e-204 Score=1841.38 Aligned_cols=768 Identities=45% Similarity=0.742 Sum_probs=698.7
Q ss_pred CCcEEEEeCCCCc--CCCCCccCCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEecCCCCCCCCCCHHHHHHH
Q 001592 16 NGNVVKVSTGELL--PANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAY 93 (1048)
Q Consensus 16 ~g~~~~v~~~~~~--~~np~~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~y 93 (1048)
+|....|+...+. ..+||.++++|||+.|++||||+|||||++||.+++||||.|-||||||||+++|||++++++.|
T Consensus 44 ~~~~~~v~~~~~~~~~~~~P~~~~vdDLt~LSyLNEpsVl~nL~kRY~n~~IYTYSGlvLIAvNPy~~L~iYt~d~i~~Y 123 (1463)
T COG5022 44 DGESVSVKKKVLGNDRIKLPKFDGVDDLTELSYLNEPAVLHNLEKRYNNGQIYTYSGLVLIAVNPYRDLGIYTDDIIQSY 123 (1463)
T ss_pred cCcccceeehhcccccccCccccCchhhhhhhccCcHHHHHHHHHHhhcCceeEEeeeEEEEecCcccCCCccHHHHHHh
Confidence 5666666665543 34577999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCC--CCchhHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHccCCCc----hHHHHHHhhhHHHHH
Q 001592 94 RQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSE----GIEYEILQTNHILEA 167 (1048)
Q Consensus 94 ~~~~~~--~PHiyaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~~----~i~~~il~sn~iLEA 167 (1048)
.++... +|||||||+.||+.|...++||||||||||||||||+||.||+|||+++++++ .|+++|+++||||||
T Consensus 124 ~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiISGESGAGKTe~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEA 203 (1463)
T COG5022 124 SGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESGAGKTENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEA 203 (1463)
T ss_pred ccCccccCCchHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHH
Confidence 988765 79999999999999999999999999999999999999999999999988765 899999999999999
Q ss_pred hhcCcCCCCCCCCcccceEEEEECCCCceeeeEeeeeecCccccccccCCCccchhHHHHhhCCChhhHHhcCCCCCCCC
Q 001592 168 FGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDY 247 (1048)
Q Consensus 168 FGNAkT~~N~NSSRfGk~i~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErnfHIFYqLl~G~~~~~~~~l~L~~~~~y 247 (1048)
||||||+||||||||||||+|.||.+|.|+||+|++|||||||||+|+.+|||||||||||+|+++..++.+++..|.+|
T Consensus 204 FGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~YLLEKSRVV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY 283 (1463)
T COG5022 204 FGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIETYLLEKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDY 283 (1463)
T ss_pred hccccccccCCcccccceEEEEECCCCceechhhhhhhhhhhhhccCCCCccchhhhhhHhcCChHHHHHHhhccChHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999988888888888999999
Q ss_pred ccccCCCCcccCCcchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceeeeeCCCceeeecChHHHHHHHHhcC
Q 001592 248 NYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMG 327 (1048)
Q Consensus 248 ~yL~~~~~~~~~~~dD~~~f~~l~~al~~lg~~~~~~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLg 327 (1048)
.||++++|..++|+||+++|+.|++||++|||+.++|.+||+|||||||||||+|..+ .++.+.+.+.+.++.+|.|||
T Consensus 284 ~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~eeq~~IF~iLAaILhiGNIef~~~-r~g~a~~~~~~~~~~~c~LLg 362 (1463)
T COG5022 284 IYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEEQDQIFKILAAILHIGNIEFKED-RNGAAIFSDNSVLDKACYLLG 362 (1463)
T ss_pred HhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhcceeeeec-ccchhhcCCchHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999853 445667889999999999999
Q ss_pred CCHHHHHHhHhcceeccCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccCcceeEEecccCCccC
Q 001592 328 CSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESF 407 (1048)
Q Consensus 328 v~~~~L~~~Lt~~~~~~~~e~i~~~l~~~~A~~~rdalak~LY~~LF~wlV~~iN~~l~~~~~~~~~~IgILDi~GFE~f 407 (1048)
||+..|.++|+.|.|++++|.|.+++|..||..+||||||+||++||+|||.+||.+|..+.. ...|||||||||||+|
T Consensus 363 Id~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~lY~~lFdwiV~rIN~sL~~~~~-~~~fIGVLDIyGFEiF 441 (1463)
T COG5022 363 IDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAA-ASNFIGVLDIYGFEIF 441 (1463)
T ss_pred CCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc-cccceeEEeecchhhh
Confidence 999999999999999999999999999999999999999999999999999999999997654 5689999999999999
Q ss_pred CCCChHHHHHHHhhHHHHHHHHHhhhhHhHhhhhhcCCceecccccChHHHHHHHhc-CCCccccccccccCCCCCChHH
Q 001592 408 KKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEK-KPLGVLSLLDEESNFPKATDLT 486 (1048)
Q Consensus 408 ~~NsfEQlcINyaNE~Lq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~-~p~Gil~lLdee~~~p~~td~~ 486 (1048)
+.|||||||||||||||||+||+|||++||++|.+|||+|++|+|.||++|+||||+ .|.|||++|||||.+|.|||++
T Consensus 442 EkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s 521 (1463)
T COG5022 442 EKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDES 521 (1463)
T ss_pred ccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchH
Confidence 999999999999999999999999999999999999999999999999999999997 4789999999999999999999
Q ss_pred HHHHHHHHhC--CCCccccCC--CCceEEEeccCcccccccchhhhccCcchHHHHHHHhhccHHHH-HHhhcccCCCCC
Q 001592 487 FANKLKQHLG--SNSCFKGER--GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSP 561 (1048)
Q Consensus 487 f~~kl~~~~~--~~~~f~~~~--~~~F~I~HyaG~V~Y~~~gflekNrD~l~~~~~~ll~~s~~~l~-~lf~~~~~~~~~ 561 (1048)
|..||.+.+. +++.|.+++ ...|+|.||||+|+|+|+||++||+|+++.++++||..|+++++ .+|.......+
T Consensus 522 ~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~~~~- 600 (1463)
T COG5022 522 FTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEENIES- 600 (1463)
T ss_pred HHHHHHHHhccccCccccccccCCCceEEEeecccceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhhhccc-
Confidence 9999999876 567788765 56899999999999999999999999999999999999999875 68873321111
Q ss_pred CCCCCCCCCCCccCcccHHHHHHHHHHHHHHHHhccCCeeEEeecCCCCCCCCCcchhhhhhhhcccChhHHHHHhhcCC
Q 001592 562 KPAASSQPGALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGY 641 (1048)
Q Consensus 562 ~~~~~~~~~~~~~~~~tv~~~f~~~L~~L~~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gy 641 (1048)
.+.++|+++.|+.||++||.+|++|+||||||||||..+.|+.||..+|++|||||||||+|||+|+||
T Consensus 601 -----------K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGF 669 (1463)
T COG5022 601 -----------KGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGF 669 (1463)
T ss_pred -----------cCCCCcHHHHHHHHHHHHHHHHHhcCCceeEeeCCCcccCccccchHHHHHHHHhcchhhheeeccccC
Confidence 235799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHhhhcccccccc------CCChHHHHHHHHHhcCCCccccccCceeeeeeccchhhhhhhhhhhHH-HHH
Q 001592 642 PTRMRHQEFAGRYGVLLSEKQL------SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQ-AII 714 (1048)
Q Consensus 642 p~r~~~~~F~~RY~~L~~~~~~------~~d~~~~~~~iL~~~~~~~~~~qvGkTKVFlr~~~~~~LE~~r~~~~~-aai 714 (1048)
|.|++|++|+.||++|.|...- ..|.+.+|..||....+|...||+|+|||||+.++++.||.+|...+. .++
T Consensus 670 P~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~ 749 (1463)
T COG5022 670 PSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIAT 749 (1463)
T ss_pred chhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhcCChhheeccceeEEeeCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986432 135788999999999999999999999999999999999999998886 678
Q ss_pred HHHHhhhccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhh-hHhHhhHHH--------------------------
Q 001592 715 RLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRRHASLGKS-CSAVVPEIR-------------------------- 767 (1048)
Q Consensus 715 ~IQ~~~Rg~~aRr~y~~~r~aai~IQs~~Rg~~aRr~~~~~r~~-aa~~iQ~~~-------------------------- 767 (1048)
.||+.|||+..|++|......+..+|...+|+..|+.+..-..- ++..+|..|
T Consensus 750 ~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~ 829 (1463)
T COG5022 750 RIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKRE 829 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887777777776666666544322211 344444433
Q ss_pred ---------HHHhhhhhhhhhhhhhHHHHHHhh-hhhhhh
Q 001592 768 ---------DEQLREIICLQSAIRGWLVRKQLK-MHKLKQ 797 (1048)
Q Consensus 768 ---------~~~~~aai~IQs~~Rg~laRr~~~-l~~~~~ 797 (1048)
....++.+.+|+.||...+++.+. +.+...
T Consensus 830 ~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k~~i 869 (1463)
T COG5022 830 KKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETI 869 (1463)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHH
Confidence 124557788888888888888888 554443
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=2.1e-200 Score=1819.21 Aligned_cols=737 Identities=32% Similarity=0.522 Sum_probs=687.1
Q ss_pred ee-eecCCeEEEEe---cCCcEEEEeCCCCcCCCCCc-cCCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEec
Q 001592 2 IQ-STSGDEAFVLL---SNGNVVKVSTGELLPANPDI-LEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAV 76 (1048)
Q Consensus 2 i~-~~~~~~~~v~~---~~g~~~~v~~~~~~~~np~~-~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iYT~~G~iLiav 76 (1048)
|. ++.|++++|.. ++|++++|+.++++++||+. .++++||+.|++|||++|||+|+.||.++.||||+|++||||
T Consensus 57 v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~n~~~~~~~~~Dl~~L~~lnE~~vL~nL~~Ry~~~~IYTy~G~iLIav 136 (821)
T PTZ00014 57 VLPGSTGEKLTLKQIDPPTNSTFEVKPEHAFNANSQIDPMTYGDIGLLPHTNIPCVLDFLKHRYLKNQIYTTADPLLVAI 136 (821)
T ss_pred EEEecCCCEEEEEEecCCCCcEEEeeHHHhhhcCCCCCcCCcchhhhCCCCCHHHHHHHHHHHHcCCCCeeeECCEEEEE
Confidence 44 77899999985 47999999999999999997 678999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHhhcC---CCCCchhHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHccCCC--
Q 001592 77 NPFKAVPIYGNKFITAYRQKV---MDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS-- 151 (1048)
Q Consensus 77 NP~k~l~ly~~~~~~~y~~~~---~~~PHiyaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~-- 151 (1048)
|||+++|+|++++++.|++.. ..|||||+||+.||+.|..+++||||||||||||||||+||++|+|||..+++.
T Consensus 137 NPyk~l~~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~tK~im~yla~~~~~~~~ 216 (821)
T PTZ00014 137 NPFKDLGNTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQTIIVSGESGAGKTEATKQIMRYFASSKSGNMD 216 (821)
T ss_pred CCCCCCCCCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhccCCCc
Confidence 999999999999999999753 248999999999999999999999999999999999999999999999987653
Q ss_pred chHHHHHHhhhHHHHHhhcCcCCCCCCCCcccceEEEEECCCCceeeeEeeeeecCccccccccCCCccchhHHHHhhCC
Q 001592 152 EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGA 231 (1048)
Q Consensus 152 ~~i~~~il~sn~iLEAFGNAkT~~N~NSSRfGk~i~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErnfHIFYqLl~G~ 231 (1048)
..|+++|+++||||||||||||++|||||||||||+|+||..|.|+||+|.+|||||||||+|++||||||||||||+|+
T Consensus 217 ~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLl~G~ 296 (821)
T PTZ00014 217 LKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRYGSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGA 296 (821)
T ss_pred ccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEeeEEEEEEeccCceeeecCCCCCCEeHHHHHHhCC
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHhcCCCCCCCCccccCCCCcccCCcchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceeeeeCC---C
Q 001592 232 PSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDN---E 308 (1048)
Q Consensus 232 ~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~al~~lg~~~~~~~~i~~ilaaILhLGni~F~~~~~---~ 308 (1048)
++++|++|+|.++.+|+||+++ |..++++||+++|..++.||++|||+++++..||+|||||||||||+|...+. +
T Consensus 297 ~~~~~~~l~L~~~~~y~yL~~~-~~~~~~~dD~~~f~~~~~A~~~lg~s~~e~~~If~ilaaILhLGNi~F~~~~~~~~~ 375 (821)
T PTZ00014 297 NDEMKEKYKLKSLEEYKYINPK-CLDVPGIDDVKDFEEVMESFDSMGLSESQIEDIFSILSGVLLLGNVEIEGKEEGGLT 375 (821)
T ss_pred CHHHHHHcCCCChHhccccCCC-CccCCCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEeccccCCCC
Confidence 9999999999999999999965 88899999999999999999999999999999999999999999999986432 2
Q ss_pred ceeeecC--hHHHHHHHHhcCCCHHHHHHhHhcceeccCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 001592 309 NHVEVIA--DEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLE 386 (1048)
Q Consensus 309 ~~~~~~~--~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~i~~~l~~~~A~~~rdalak~LY~~LF~wlV~~iN~~l~ 386 (1048)
+.+.+.+ .+.+..||.||||++++|.++||++++.++++.+.++++++||.++||||||+||++||+|||.+||.+|.
T Consensus 376 ~~~~i~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~ 455 (821)
T PTZ00014 376 DAAAISDESLEVFNEACELLFLDYESLKKELTVKVTYAGNQKIEGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIE 455 (821)
T ss_pred CceeccCCCHHHHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455544 56899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCccCcceeEEecccCCccCCCCChHHHHHHHhhHHHHHHHHHhhhhHhHhhhhhcCCceecccccChHHHHHHHhcCC
Q 001592 387 VGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKP 466 (1048)
Q Consensus 387 ~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~p 466 (1048)
+... ...+||||||||||+|+.|||||||||||||+|||+|++|+|+.||++|.+|||+|+.|+|.||++|||||+++|
T Consensus 456 ~~~~-~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~ 534 (821)
T PTZ00014 456 PPGG-FKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKG 534 (821)
T ss_pred CCcc-cCceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCC
Confidence 7543 457999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCChHHHHHHHHHHhCCCCccccCC---CCceEEEeccCcccccccchhhhccCcchHHHHHHHhh
Q 001592 467 LGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER---GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSS 543 (1048)
Q Consensus 467 ~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~~~---~~~F~I~HyaG~V~Y~~~gflekNrD~l~~~~~~ll~~ 543 (1048)
.|||++|||||++|++||++|++||++++++|++|.+++ ...|+|+||||+|+|+++||++||+|+|+++++++|++
T Consensus 535 ~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~ 614 (821)
T PTZ00014 535 KSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNFVIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKA 614 (821)
T ss_pred ccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCCceEEEEeceeeeeccCcHHHhccccchHHHHHHHHh
Confidence 999999999999999999999999999999999998764 46899999999999999999999999999999999999
Q ss_pred ccHHHH-HHhhcccCCCCCCCCCCCCCCCCccCcccHHHHHHHHHHHHHHHHhccCCeeEEeecCCCCCCCCCcchhhhh
Q 001592 544 CTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVL 622 (1048)
Q Consensus 544 s~~~l~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~L~~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~ 622 (1048)
|+++++ .+|.......+ ...+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|+
T Consensus 615 S~n~~i~~lf~~~~~~~~-----------~~~k~~tv~s~Fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~ 683 (821)
T PTZ00014 615 SPNPLVRDLFEGVEVEKG-----------KLAKGQLIGSQFLNQLDSLMSLINSTEPHFIRCIKPNENKKPLDWNSSKVL 683 (821)
T ss_pred CccHHHHHHhcccccccc-----------cccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCcCcccCccccchHhHH
Confidence 999976 57754321111 112347999999999999999999999999999999999999999999999
Q ss_pred hhhcccChhHHHHHhhcCCccccchhhHHHhhhcccccccc--CCChHHHHHHHHHhcCCCccccccCceeeeeeccchh
Q 001592 623 QQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL--SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLA 700 (1048)
Q Consensus 623 ~QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~--~~d~~~~~~~iL~~~~~~~~~~qvGkTKVFlr~~~~~ 700 (1048)
+||||+||||+|||+|.|||+|++|.+|+.||++|.+.... ..|++..|+.||+.+++++++|++|+||||||.+++.
T Consensus 684 ~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~il~~~~l~~~~~~iGkTKVFlr~~~~~ 763 (821)
T PTZ00014 684 IQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEKLLERSGLPKDSYAIGKTMVFLKKDAAK 763 (821)
T ss_pred HHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCcccccCCCCCHHHHHHHHHHHcCCCcccEEecCCeEEEcCcHHH
Confidence 99999999999999999999999999999999999886554 3489999999999999999999999999999999999
Q ss_pred hhhhhhhhhHH----HHHHHHHhhhccchhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 001592 701 ALEDRRKQVLQ----AIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRR 751 (1048)
Q Consensus 701 ~LE~~r~~~~~----aai~IQ~~~Rg~~aRr~y~~~r~aai~IQs~~Rg~~aRr~ 751 (1048)
.||..+...+. .+..||++||||++|++|++++.++++||++||++++++.
T Consensus 764 ~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 764 ELTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99998766543 5678999999999999999999999999999999998864
No 3
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=1.3e-191 Score=1722.99 Aligned_cols=677 Identities=80% Similarity=1.222 Sum_probs=645.4
Q ss_pred CCCCCccCCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEecCCCCCCCCCCHHHHHHHhhcCCCCCchhHHHH
Q 001592 29 PANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMDSPHVYAIAD 108 (1048)
Q Consensus 29 ~~np~~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~y~~~~~~~PHiyaiA~ 108 (1048)
|+||+.++++|||+.|++|||++||++|+.||.+++||||+|+||||||||+.+|+|+++++..|+++...|||||+||+
T Consensus 1 ~~np~~~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~ly~~~~~~~y~~~~~~~PHifaiA~ 80 (677)
T cd01383 1 PANPDILDGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVPLYGNDYIEAYRKKSNDSPHVYAIAD 80 (677)
T ss_pred CCCcccccCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCCCCCHHHHHHhhCCCCCCCCHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred HHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHccCCCchHHHHHHhhhHHHHHhhcCcCCCCCCCCcccceEEE
Q 001592 109 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEI 188 (1048)
Q Consensus 109 ~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~~~i~~~il~sn~iLEAFGNAkT~~N~NSSRfGk~i~l 188 (1048)
+||+.|..+++||||||||||||||||++|++|+||+.+++++ .|+++|+++||||||||||||++||||||||||++|
T Consensus 81 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~~-~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~l 159 (677)
T cd01383 81 TAYNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGGS-GIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEI 159 (677)
T ss_pred HHHHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHHhhccccCCCCCcCccceeEEE
Confidence 9999999999999999999999999999999999999998765 899999999999999999999999999999999999
Q ss_pred EECCCCceeeeEeeeeecCccccccccCCCccchhHHHHhhCCChhhHHhcCCCCCCCCccccCCCCcccCCcchHHHHH
Q 001592 189 HFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFH 268 (1048)
Q Consensus 189 ~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 268 (1048)
+||.+|.|+||+|.+||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|.
T Consensus 160 ~f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~f~ 239 (677)
T cd01383 160 HFSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQRFH 239 (677)
T ss_pred EECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceeeeeCCCceeeecChHHHHHHHHhcCCCHHHHHHhHhcceeccCCce
Q 001592 269 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDS 348 (1048)
Q Consensus 269 ~l~~al~~lg~~~~~~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~ 348 (1048)
.++.||+.|||+++++..||+|||||||||||+|...++++.+++.+++.+..||.||||++++|.++||++++.++|+.
T Consensus 240 ~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~ 319 (677)
T cd01383 240 TLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVADEALSTAAKLIGCNIEDLMLALSTRKMHVNNDN 319 (677)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCChHHHHHHHHHhCCCHHHHHHHhhhcEEEeCCce
Confidence 99999999999999999999999999999999999877777778888999999999999999999999999999999999
Q ss_pred eeecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccCcceeEEecccCCccCCCCChHHHHHHHhhHHHHHHH
Q 001592 349 IAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHF 428 (1048)
Q Consensus 349 i~~~l~~~~A~~~rdalak~LY~~LF~wlV~~iN~~l~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f 428 (1048)
+.++++++||.++||+|||+||++||+|||.+||.+|.++......+||||||||||+|+.|||||||||||||+||++|
T Consensus 320 ~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f 399 (677)
T cd01383 320 IVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHF 399 (677)
T ss_pred EeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876556789999999999999999999999999999999999
Q ss_pred HHhhhhHhHhhhhhcCCceecccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccCCCCc
Q 001592 429 NRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGERGRA 508 (1048)
Q Consensus 429 ~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~~~~~~ 508 (1048)
++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||++|++||++++++|++|.++++..
T Consensus 400 ~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~ 479 (677)
T cd01383 400 NRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRGERGGA 479 (677)
T ss_pred HHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHhCCCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred eEEEeccCcccccccchhhhccCcchHHHHHHHhhccHHHHHHhhcccCCCCCCCCCCCCCCCCccCcccHHHHHHHHHH
Q 001592 509 FSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLF 588 (1048)
Q Consensus 509 F~I~HyaG~V~Y~~~gflekNrD~l~~~~~~ll~~s~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~ 588 (1048)
|+|+||||+|+|+++||++||+|.++++++++|++|++++.++|.+.+...+....+..+.++...+..||+++|+.||+
T Consensus 480 F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~~f~~~~~~~s~~~~~~~~~~~~~~~~~tv~~~fk~qL~ 559 (677)
T cd01383 480 FTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQLFASSMLIQSPVVGPLYVASAADSQKLSVGTKFKGQLF 559 (677)
T ss_pred eEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHHHHHhhhhccccccccccccccccccCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999765432221111111112234567899999999999
Q ss_pred HHHHHHhccCCeeEEeecCCCCCCCCCcchhhhhhhhcccChhHHHHHhhcCCccccchhhHHHhhhccccccccCCChH
Q 001592 589 KLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDPL 668 (1048)
Q Consensus 589 ~L~~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~~d~~ 668 (1048)
.||++|++|+||||||||||..+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|++||++|++......|++
T Consensus 560 ~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~~ 639 (677)
T cd01383 560 KLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLENIASQDPL 639 (677)
T ss_pred HHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCccccCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877777899
Q ss_pred HHHHHHHHhcCCCccccccCceeeeeeccchhhhhhhh
Q 001592 669 SISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 706 (1048)
Q Consensus 669 ~~~~~iL~~~~~~~~~~qvGkTKVFlr~~~~~~LE~~r 706 (1048)
..|+.||+.+++++++|++|+||||||.++++.||..|
T Consensus 640 ~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 640 SVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred HHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 99999999999999999999999999999999999875
No 4
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=3.9e-186 Score=1676.35 Aligned_cols=660 Identities=44% Similarity=0.743 Sum_probs=625.2
Q ss_pred CccccccCCCCCchhHHHHHHHHhhcCccccccCCceEecCCCCCCCCCCHHHHHHHhhcCC--CCCchhHHHHHHHHHh
Q 001592 37 GVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVM--DSPHVYAIADTAYNEM 114 (1048)
Q Consensus 37 ~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~y~~~~~--~~PHiyaiA~~Ay~~m 114 (1048)
|||||+.|++|||++|||+|+.||.+|+||||+|+||||||||+++|+|+++.++.|+++.. .|||||+||+.||+.|
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 80 (671)
T cd01381 1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILPIYTADEIKLYKNKSIGELPPHIFAISDNAYTNM 80 (671)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCCCCCHHHHHHHhcCCccccCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999998754 3899999999999999
Q ss_pred hhCCCceEEEEcCCCCCChhhHHHHHHHHHHHccCCCchHHHHHHhhhHHHHHhhcCcCCCCCCCCcccceEEEEECCCC
Q 001592 115 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFG 194 (1048)
Q Consensus 115 ~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~~~i~~~il~sn~iLEAFGNAkT~~N~NSSRfGk~i~l~f~~~g 194 (1048)
.++++||||||||||||||||++|++|+||+.++++...|+++|+++||||||||||||++||||||||||++|+|+..|
T Consensus 81 ~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~F~~~g 160 (671)
T cd01381 81 QREKKNQCIIISGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNKRG 160 (671)
T ss_pred HHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCC
Confidence 99999999999999999999999999999999998777899999999999999999999999999999999999999999
Q ss_pred ceeeeEeeeeecCccccccccCCCccchhHHHHhhCCChhhHHhcCCCCCCCCccccCCCCcccCCcchHHHHHHHHHHH
Q 001592 195 KICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEAL 274 (1048)
Q Consensus 195 ~i~Ga~i~~yLLEksRVv~~~~gErnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~al 274 (1048)
+|+||+|++|||||||||+|++||||||||||||+|++++++++|+|.++.+|+||++++|..++++||+++|..++.||
T Consensus 161 ~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al 240 (671)
T cd01381 161 AIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFADIRSAM 240 (671)
T ss_pred cEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHhcCceeeeeC--CCceeeecChHHHHHHHHhcCCCHHHHHHhHhcceeccCCceeeec
Q 001592 275 DIVLIRKEDREQTFAMLAAVLWLGNISFQVID--NENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKK 352 (1048)
Q Consensus 275 ~~lg~~~~~~~~i~~ilaaILhLGni~F~~~~--~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~i~~~ 352 (1048)
+.|||+++++..||+|||||||||||+|...+ +.+.+.+.+.+.++.||.||||++++|.++||++++.++|+.+.++
T Consensus 241 ~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~~~ 320 (671)
T cd01381 241 KVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDDTPNLQRVAQLLGVPIQDLMDALTSRTIFTRGETVVTP 320 (671)
T ss_pred HHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCChHHHHHHHHHhCCCHHHHhhhhceEEEEeCCceEEec
Confidence 99999999999999999999999999998753 2356889999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccCcceeEEecccCCccCCCCChHHHHHHHhhHHHHHHHHHhh
Q 001592 353 LTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHL 432 (1048)
Q Consensus 353 l~~~~A~~~rdalak~LY~~LF~wlV~~iN~~l~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~ 432 (1048)
++++||.++||||||+||++||+|||.+||.+|.+.......+||||||||||+|+.|||||||||||||+||++|++++
T Consensus 321 ~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkLQ~~f~~~v 400 (671)
T cd01381 321 LSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHI 400 (671)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986534456799999999999999999999999999999999999999
Q ss_pred hhHhHhhhhhcCCceecccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccCC---CCce
Q 001592 433 FKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER---GRAF 509 (1048)
Q Consensus 433 f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~~~---~~~F 509 (1048)
|+.||++|.+|||+|..|+|.||++|||||+++|.|||++|||||++|++||++|++||++.+++|++|..++ +..|
T Consensus 401 f~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~~~~~F 480 (671)
T cd01381 401 FKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLKPKSTQETQF 480 (671)
T ss_pred HHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHHHhcCCCCcccCCCCCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997543 5689
Q ss_pred EEEeccCcccccccchhhhccCcchHHHHHHHhhccHHHH-HHhhcccCCCCCCCCCCCCCCCCccCcccHHHHHHHHHH
Q 001592 510 SIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLF 588 (1048)
Q Consensus 510 ~I~HyaG~V~Y~~~gflekNrD~l~~~~~~ll~~s~~~l~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~ 588 (1048)
+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|....... .+...+..||+++|+.||+
T Consensus 481 ~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~----------~~~~~k~~tv~~~fk~qL~ 550 (671)
T cd01381 481 GINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMG----------AETRKKKPTLSSQFRRSLD 550 (671)
T ss_pred EEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhccccccc----------ccccccCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999976 4776432111 0112346899999999999
Q ss_pred HHHHHHhccCCeeEEeecCCCCCCCCCcchhhhhhhhcccChhHHHHHhhcCCccccchhhHHHhhhcccccccc---CC
Q 001592 589 KLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL---SQ 665 (1048)
Q Consensus 589 ~L~~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~---~~ 665 (1048)
.||++|++|+||||||||||..+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|+.||++|++...+ ..
T Consensus 551 ~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~ 630 (671)
T cd01381 551 LLMRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVKPAYKQD 630 (671)
T ss_pred HHHHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCcccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997654 34
Q ss_pred ChHHHHHHHHHhcCCCccccccCceeeeeeccchhhhhhhh
Q 001592 666 DPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 706 (1048)
Q Consensus 666 d~~~~~~~iL~~~~~~~~~~qvGkTKVFlr~~~~~~LE~~r 706 (1048)
+++..|..|++.+.+++++|++|+||||||.+++..||..|
T Consensus 631 ~~~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 631 CLAGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred cHHHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 77889999999999999999999999999999999999875
No 5
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=8.8e-186 Score=1680.97 Aligned_cols=672 Identities=47% Similarity=0.748 Sum_probs=625.8
Q ss_pred CCccCCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEecCCCCCCCCCCHHHHHHHhhcCCC--CCchhHHHHH
Q 001592 32 PDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADT 109 (1048)
Q Consensus 32 p~~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~y~~~~~~--~PHiyaiA~~ 109 (1048)
||.+++++||+.|++|||++||++|+.||.++.||||+|+||||||||+++|+|++++++.|+++... |||||+||++
T Consensus 1 p~~~~~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHiyaiA~~ 80 (693)
T cd01377 1 PPKFDKVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLPIYTEEVVEMYRGKKREEMPPHIFAIADN 80 (693)
T ss_pred CCcccCcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCCCCCHHHHHHhcCCCCCCCCCCHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999987643 8999999999
Q ss_pred HHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHccCCC----------chHHHHHHhhhHHHHHhhcCcCCCCCCC
Q 001592 110 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS----------EGIEYEILQTNHILEAFGNAKTSRNDNS 179 (1048)
Q Consensus 110 Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~----------~~i~~~il~sn~iLEAFGNAkT~~N~NS 179 (1048)
||+.|..+++||||||||||||||||++|+||+||+.++++. ..|+++|+++||||||||||||++||||
T Consensus 81 Ay~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NS 160 (693)
T cd01377 81 AYRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNS 160 (693)
T ss_pred HHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCc
Confidence 999999999999999999999999999999999999998642 3699999999999999999999999999
Q ss_pred CcccceEEEEECCCCceeeeEeeeeecCccccccccCCCccchhHHHHhhCCChhhHHhcCCCCC-CCCccccCCCCccc
Q 001592 180 SRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVA-NDYNYLNQSECLTI 258 (1048)
Q Consensus 180 SRfGk~i~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErnfHIFYqLl~G~~~~~~~~l~L~~~-~~y~yL~~~~~~~~ 258 (1048)
||||||++|+||..|+|+||+|.+|||||||||+|++||||||||||||+|++++++++|+|.++ .+|+||++++|. +
T Consensus 161 SRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~~-~ 239 (693)
T cd01377 161 SRFGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGELT-I 239 (693)
T ss_pred cccceeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCcc-C
Confidence 99999999999999999999999999999999999999999999999999999999999999875 899999998764 7
Q ss_pred CCcchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceeeeeCCCceeeecChHHHHHHHHhcCCCHHHHHHhHh
Q 001592 259 DGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALS 338 (1048)
Q Consensus 259 ~~~dD~~~f~~l~~al~~lg~~~~~~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt 338 (1048)
+++||+++|+.++.||+.|||+++++..||+|||||||||||+|...++++.+.+.+.+.+..||.||||++++|.++||
T Consensus 240 ~~~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~ 319 (693)
T cd01377 240 PGVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGTEEADKAAHLLGVNSADLLKALL 319 (693)
T ss_pred CCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCChHHHHHHHHHhCCCHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999987667778899999999999999999999999999
Q ss_pred cceeccCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccCcceeEEecccCCccCCCCChHHHHHH
Q 001592 339 THKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCIN 418 (1048)
Q Consensus 339 ~~~~~~~~e~i~~~l~~~~A~~~rdalak~LY~~LF~wlV~~iN~~l~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcIN 418 (1048)
++++.++++.+.+++++++|.++||+|||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||
T Consensus 320 ~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~-~~~~~IgiLDIfGFE~f~~NsfEQLcIN 398 (693)
T cd01377 320 HPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQ-QRAYFIGVLDIAGFEIFDFNSFEQLCIN 398 (693)
T ss_pred ceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCceEEEEecccccccCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999998753 3567999999999999999999999999
Q ss_pred HhhHHHHHHHHHhhhhHhHhhhhhcCCceeccccc-ChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCC
Q 001592 419 YANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFE-DNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGS 497 (1048)
Q Consensus 419 yaNE~Lq~~f~~~~f~~eq~~y~~EgI~~~~i~~~-dn~~~l~li~~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~ 497 (1048)
||||+||++|++++|+.||++|.+|||+|+.|+|. ||++|||||+++|.|||++|||||++|++||.+|++||++++++
T Consensus 399 yaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~~ 478 (693)
T cd01377 399 YTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHLG 478 (693)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999994 99999999999999999999999999999999999999999999
Q ss_pred CCcccc--C--CCCceEEEeccCcccccccchhhhccCcchHHHHHHHhhccHHHH-HHhhcccCCCCCCCCCCCCCCCC
Q 001592 498 NSCFKG--E--RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGAL 572 (1048)
Q Consensus 498 ~~~f~~--~--~~~~F~I~HyaG~V~Y~~~gflekNrD~l~~~~~~ll~~s~~~l~-~lf~~~~~~~~~~~~~~~~~~~~ 572 (1048)
|++|.. + .+..|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|.......+.. .........
T Consensus 479 ~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~-~~~~~~~~~ 557 (693)
T cd01377 479 KSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGDG-GGGGGKKKK 557 (693)
T ss_pred CCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhccccccc-ccccCCCCc
Confidence 998732 2 256899999999999999999999999999999999999999976 4776433211100 000001111
Q ss_pred ccCcccHHHHHHHHHHHHHHHHhccCCeeEEeecCCCCCCCCCcchhhhhhhhcccChhHHHHHhhcCCccccchhhHHH
Q 001592 573 DTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAG 652 (1048)
Q Consensus 573 ~~~~~tv~~~f~~~L~~L~~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~~F~~ 652 (1048)
.+..+||+++|+.||+.||++|++|+||||||||||..+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|++
T Consensus 558 ~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F~~ 637 (693)
T cd01377 558 GGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEFRQ 637 (693)
T ss_pred CCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHHHH
Confidence 23458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccc--CCChHHHHHHHHHhcCCCccccccCceeeeeeccchhhhhhhh
Q 001592 653 RYGVLLSEKQL--SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 706 (1048)
Q Consensus 653 RY~~L~~~~~~--~~d~~~~~~~iL~~~~~~~~~~qvGkTKVFlr~~~~~~LE~~r 706 (1048)
||++|++...+ ..|++..|+.||+.+++++.+|++|+||||||.+++..||..|
T Consensus 638 rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 638 RYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred HHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 99999987743 3588999999999999999999999999999999999999876
No 6
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=1.3e-185 Score=1679.04 Aligned_cols=669 Identities=49% Similarity=0.820 Sum_probs=624.1
Q ss_pred CccccccCCCCCchhHHHHHHHHhhcCccccccCCceEecCCCCCCCCCCHHHHHHHhhcCCC--CCchhHHHHHHHHHh
Q 001592 37 GVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEM 114 (1048)
Q Consensus 37 ~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~y~~~~~~--~PHiyaiA~~Ay~~m 114 (1048)
|+|||+.|++|||++|||+|+.||.+++||||+|+||||||||+++|+|+++.+..|+++... |||||+||++||+.|
T Consensus 1 g~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m 80 (691)
T cd01380 1 GKDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLPIYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQM 80 (691)
T ss_pred CchhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCCcCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999987654 799999999999999
Q ss_pred hhCCCceEEEEcCCCCCChhhHHHHHHHHHHHccCCC------chHHHHHHhhhHHHHHhhcCcCCCCCCCCcccceEEE
Q 001592 115 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS------EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEI 188 (1048)
Q Consensus 115 ~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~------~~i~~~il~sn~iLEAFGNAkT~~N~NSSRfGk~i~l 188 (1048)
.++++||||||||||||||||++|+||+||+.++++. ..|+++|+++||||||||||||++||||||||||++|
T Consensus 81 ~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l 160 (691)
T cd01380 81 TRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQI 160 (691)
T ss_pred HhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEEE
Confidence 9999999999999999999999999999999998753 4799999999999999999999999999999999999
Q ss_pred EECCCCceeeeEeeeeecCccccccccCCCccchhHHHHhhCCChhhHHhcCCCCCCCCccccCCCCcccCCcchHHHHH
Q 001592 189 HFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFH 268 (1048)
Q Consensus 189 ~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 268 (1048)
+||..|+|+||+|.+|||||||||.|++||||||||||||+|++++++++|+|.++.+|+||++++|..++++||+++|+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f~ 240 (691)
T cd01380 161 LFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDFN 240 (691)
T ss_pred EECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceeeeeCCCceeeecChHHHHHHHHhcCCCHHHHHHhHhcceeccCCce
Q 001592 269 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDS 348 (1048)
Q Consensus 269 ~l~~al~~lg~~~~~~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~ 348 (1048)
.++.||+.|||+++++..||+|||||||||||+|...+++......+.+.++.||+||||++++|.++||++++.+++|.
T Consensus 241 ~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~ 320 (691)
T cd01380 241 ATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRNDSSSISPKDENLQIACELLGVDASDLRKWLVKRQIVTRSEK 320 (691)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCccceecCChHHHHHHHHHhCCCHHHHHHHHHhCEEEECCee
Confidence 99999999999999999999999999999999999766555444456789999999999999999999999999999999
Q ss_pred eeecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC--ccCcceeEEecccCCccCCCCChHHHHHHHhhHHHHH
Q 001592 349 IAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGK--QCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQ 426 (1048)
Q Consensus 349 i~~~l~~~~A~~~rdalak~LY~~LF~wlV~~iN~~l~~~~--~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~ 426 (1048)
+.++++++||.++||+|||+||++||+|||.+||.+|.+.. .....+||||||||||+|+.|||||||||||||+||+
T Consensus 321 i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~ 400 (691)
T cd01380 321 IVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANEKLQQ 400 (691)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999763 3356799999999999999999999999999999999
Q ss_pred HHHHhhhhHhHhhhhhcCCceecccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhC--CCCccccC
Q 001592 427 HFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLG--SNSCFKGE 504 (1048)
Q Consensus 427 ~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~--~~~~f~~~ 504 (1048)
+|++++|+.||++|.+|||+|+.|+|.||++|||||++ |.|||++|||||++|++||++|++||+++++ +||.|..+
T Consensus 401 ~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~ 479 (691)
T cd01380 401 QFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNPHFEKP 479 (691)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhcCCCCChHHHHHHHHHHhcccCCCCccCC
Confidence 99999999999999999999999999999999999997 5999999999999999999999999999998 89999776
Q ss_pred C--CCceEEEeccCcccccccchhhhccCcchHHHHHHHhhccHHHH-HHhhcccCCCCCC------CCCCCCCCCCccC
Q 001592 505 R--GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPK------PAASSQPGALDTQ 575 (1048)
Q Consensus 505 ~--~~~F~I~HyaG~V~Y~~~gflekNrD~l~~~~~~ll~~s~~~l~-~lf~~~~~~~~~~------~~~~~~~~~~~~~ 575 (1048)
+ ...|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|.......+.. ++.+...++...+
T Consensus 480 ~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (691)
T cd01380 480 RFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAKSKPAAKRPPKRAKQH 559 (691)
T ss_pred CCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccccccccccccccccccccccccC
Confidence 4 46899999999999999999999999999999999999999976 5776543211110 1101111222445
Q ss_pred cccHHHHHHHHHHHHHHHHhccCCeeEEeecCCCCCCCCCcchhhhhhhhcccChhHHHHHhhcCCccccchhhHHHhhh
Q 001592 576 KQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYG 655 (1048)
Q Consensus 576 ~~tv~~~f~~~L~~L~~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~ 655 (1048)
.+||+++|+.||+.||++|++|+||||||||||..+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|+.||+
T Consensus 560 ~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~ry~ 639 (691)
T cd01380 560 KPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEFAQRYR 639 (691)
T ss_pred CCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc-cCCChHHHHHHHHHhcCCCccccccCceeeeeeccchhhhhhhh
Q 001592 656 VLLSEKQ-LSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 706 (1048)
Q Consensus 656 ~L~~~~~-~~~d~~~~~~~iL~~~~~~~~~~qvGkTKVFlr~~~~~~LE~~r 706 (1048)
+|++... ...|++..|+.||+.+.+++.+|++|+||||||.+++..||..|
T Consensus 640 ~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 640 VLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 9999876 35688999999999998888999999999999999999999875
No 7
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=9e-185 Score=1662.58 Aligned_cols=659 Identities=48% Similarity=0.813 Sum_probs=619.7
Q ss_pred CCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEecCCCCCCC-CCCHHHHHHHhhcCCC--CCchhHHHHHHHH
Q 001592 36 EGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYRQKVMD--SPHVYAIADTAYN 112 (1048)
Q Consensus 36 ~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-ly~~~~~~~y~~~~~~--~PHiyaiA~~Ay~ 112 (1048)
+|||||+.|++|||++|||+|+.||.+|+||||+|+||||||||+++| +|+++.+..|+++... |||||+||++||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~ 80 (674)
T cd01384 1 EGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYR 80 (674)
T ss_pred CCcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999 9999999999987654 8999999999999
Q ss_pred HhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHccCCC----chHHHHHHhhhHHHHHhhcCcCCCCCCCCcccceEEE
Q 001592 113 EMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS----EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEI 188 (1048)
Q Consensus 113 ~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~----~~i~~~il~sn~iLEAFGNAkT~~N~NSSRfGk~i~l 188 (1048)
+|.++++||||||||||||||||++|++|+||+.++++. ..|+++|+++||||||||||||++|+||||||||++|
T Consensus 81 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l 160 (674)
T cd01384 81 AMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 160 (674)
T ss_pred HHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEE
Confidence 999999999999999999999999999999999997642 3699999999999999999999999999999999999
Q ss_pred EECCCCceeeeEeeeeecCccccccccCCCccchhHHHHhhCCChhhHHhcCCCCCCCCccccCCCCcccCCcchHHHHH
Q 001592 189 HFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFH 268 (1048)
Q Consensus 189 ~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 268 (1048)
+||..|.|+||+|.+||||||||++|++||||||||||||+| +++++++|+|.++.+|+||++++|..++++||+++|+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g-~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~ 239 (674)
T cd01384 161 QFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAA-PPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYL 239 (674)
T ss_pred EECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcC-CHHHHHHcCCCChHhCccccCCCCccccccchHHHHH
Confidence 999999999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceeeeeCCCceeeecC---hHHHHHHHHhcCCCHHHHHHhHhcceeccC
Q 001592 269 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIA---DEAVTTAAMLMGCSSDELMLALSTHKIQAG 345 (1048)
Q Consensus 269 ~l~~al~~lg~~~~~~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~ 345 (1048)
.++.||+.|||+++++..||+|||||||||||+|...++.+.+.+.+ .+.++.||.||||++++|.++||++++.++
T Consensus 240 ~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~ 319 (674)
T cd01384 240 ATRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTP 319 (674)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeC
Confidence 99999999999999999999999999999999998765444444433 589999999999999999999999999999
Q ss_pred CceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccCcceeEEecccCCccCCCCChHHHHHHHhhHHHH
Q 001592 346 KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQ 425 (1048)
Q Consensus 346 ~e~i~~~l~~~~A~~~rdalak~LY~~LF~wlV~~iN~~l~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq 425 (1048)
++.+.+++++++|.++||+|||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+||
T Consensus 320 ~e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ 398 (674)
T cd01384 320 EEVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDP-DSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQ 398 (674)
T ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCeEEEEEecccccccCcCCHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999998753 34579999999999999999999999999999999
Q ss_pred HHHHHhhhhHhHhhhhhcCCceecccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccCC
Q 001592 426 QHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER 505 (1048)
Q Consensus 426 ~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~~~ 505 (1048)
++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||.+|++||++++++|++|..++
T Consensus 399 ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~ 478 (674)
T cd01384 399 QHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPK 478 (674)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred --CCceEEEeccCcccccccchhhhccCcchHHHHHHHhhccHHHHH-HhhcccCCCCCCCCCCCCCCCCccCcccHHHH
Q 001592 506 --GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQ-LFASKMLKPSPKPAASSQPGALDTQKQSVGTK 582 (1048)
Q Consensus 506 --~~~F~I~HyaG~V~Y~~~gflekNrD~l~~~~~~ll~~s~~~l~~-lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~ 582 (1048)
+..|+|+||||+|+|+++||++||+|.++++++++|++|++++++ +|....... +...+..||+++
T Consensus 479 ~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~-----------~~~~k~~tv~~~ 547 (674)
T cd01384 479 LSRTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEET-----------SKSSKFSSIGSR 547 (674)
T ss_pred CCCCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhccccccc-----------ccccccccHHHH
Confidence 468999999999999999999999999999999999999999764 775432111 012345899999
Q ss_pred HHHHHHHHHHHHhccCCeeEEeecCCCCCCCCCcchhhhhhhhcccChhHHHHHhhcCCccccchhhHHHhhhccccccc
Q 001592 583 FKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQ 662 (1048)
Q Consensus 583 f~~~L~~L~~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~ 662 (1048)
|+.||+.||++|++|+||||||||||..+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|+.||++|++...
T Consensus 548 fk~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~ 627 (674)
T cd01384 548 FKQQLQSLMETLSTTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPEVL 627 (674)
T ss_pred HHHHHHHHHHHHhccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred c-CCChHHHHHHHHHhcCCCccccccCceeeeeeccchhhhhhhhhhh
Q 001592 663 L-SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQV 709 (1048)
Q Consensus 663 ~-~~d~~~~~~~iL~~~~~~~~~~qvGkTKVFlr~~~~~~LE~~r~~~ 709 (1048)
. ..+++..|+.||+.+++ +.|++|+||||||.+++..||..|...
T Consensus 628 ~~~~~~~~~~~~il~~~~~--~~~~~GktkVFlr~~~~~~LE~~R~~~ 673 (674)
T cd01384 628 KGSSDDKAACKKILDKMGL--KGYQIGKTKVFLRAGQMAELDARRTEV 673 (674)
T ss_pred cCCCcHHHHHHHHHHhCCC--CCEEecCeeEEEcCCHHHHHHHHHHhc
Confidence 4 34788899999998765 579999999999999999999999754
No 8
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=3.5e-184 Score=1662.43 Aligned_cols=657 Identities=44% Similarity=0.733 Sum_probs=621.1
Q ss_pred CccccccCCCCCchhHHHHHHHHhhcCccccccCCceEecCCCCCCCCCCHHHHHHHhhcCC--CCCchhHHHHHHHHHh
Q 001592 37 GVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVM--DSPHVYAIADTAYNEM 114 (1048)
Q Consensus 37 ~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~y~~~~~--~~PHiyaiA~~Ay~~m 114 (1048)
|||||+.|++|||++||++|+.||.+|+||||+|++|||||||+++|+|+++.++.|+++.. .|||||+||++||+.|
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~m 80 (674)
T cd01378 1 GVDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLPIYTDETIELYKGKSRYELPPHIYALADNAYRSM 80 (674)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCCCCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999998765 3899999999999999
Q ss_pred hhCCCceEEEEcCCCCCChhhHHHHHHHHHHHccCCC---chHHHHHHhhhHHHHHhhcCcCCCCCCCCcccceEEEEEC
Q 001592 115 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS---EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFS 191 (1048)
Q Consensus 115 ~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~---~~i~~~il~sn~iLEAFGNAkT~~N~NSSRfGk~i~l~f~ 191 (1048)
+.+++||||||||||||||||++|++|+||+.++++. ..|+++|+++||||||||||||++||||||||||++|+|+
T Consensus 81 ~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~ 160 (674)
T cd01378 81 KSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQKVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFD 160 (674)
T ss_pred HHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEEEC
Confidence 9999999999999999999999999999999998764 3699999999999999999999999999999999999999
Q ss_pred CCCceeeeEeeeeecCccccccccCCCccchhHHHHhhCCChhhHHhcCCCCCCCCccccCCCCcccCCcchHHHHHHHH
Q 001592 192 AFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLM 271 (1048)
Q Consensus 192 ~~g~i~Ga~i~~yLLEksRVv~~~~gErnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~ 271 (1048)
..|.|+||+|.+|||||||||+|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|..++
T Consensus 161 ~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~ 240 (674)
T cd01378 161 FKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKETQ 240 (674)
T ss_pred CCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHhcCceeeeeCCCceeeecChHHHHHHHHhcCCCHHHHHHhHhcceeccCC----c
Q 001592 272 EALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGK----D 347 (1048)
Q Consensus 272 ~al~~lg~~~~~~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~----e 347 (1048)
.||+.|||+++++..||+|||||||||||+|...+++ .+.+.+.+.++.||.||||++++|.++|+++++.+++ |
T Consensus 241 ~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~~-~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~e 319 (674)
T cd01378 241 NAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGDG-AAVISDKDVLDFAAYLLGVDPSELEKALTSRTIETGGGGRGE 319 (674)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCCC-ccccCChHHHHHHHHHcCCCHHHHHHHhcccEEEeCCCCCce
Confidence 9999999999999999999999999999999865443 3688899999999999999999999999999999998 9
Q ss_pred eeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccCcceeEEecccCCccCCCCChHHHHHHHhhHHHHHH
Q 001592 348 SIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQH 427 (1048)
Q Consensus 348 ~i~~~l~~~~A~~~rdalak~LY~~LF~wlV~~iN~~l~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~ 427 (1048)
.+.++++++||.++||+|||+||++||+|||.+||.+|.+.......+||||||||||+|+.|||||||||||||+||++
T Consensus 320 ~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~ 399 (674)
T cd01378 320 VYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQI 399 (674)
T ss_pred eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999986445677999999999999999999999999999999999
Q ss_pred HHHhhhhHhHhhhhhcCCceecccccChHHHHHHHhc-CCCccccccccccCCC-CCChHHHHHHHHHHhCCCCccccC-
Q 001592 428 FNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEK-KPLGVLSLLDEESNFP-KATDLTFANKLKQHLGSNSCFKGE- 504 (1048)
Q Consensus 428 f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~-~p~Gil~lLdee~~~p-~~td~~f~~kl~~~~~~~~~f~~~- 504 (1048)
|++++|+.||++|.+|||+|+.|+|.||++|||||++ +|.|||++|||||++| ++||++|++||++++++|++|..+
T Consensus 400 f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~~~~~~~~~~ 479 (674)
T cd01378 400 FIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHPHSDHFS 479 (674)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhccCCCCCCCC
Confidence 9999999999999999999999999999999999999 8999999999999999 999999999999999999986543
Q ss_pred -CCCceEEEeccCcccccccchhhhccCcchHHHHHHHhhccHHHHH-HhhcccCCCCCCCCCCCCCCCCccCcccHHHH
Q 001592 505 -RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQ-LFASKMLKPSPKPAASSQPGALDTQKQSVGTK 582 (1048)
Q Consensus 505 -~~~~F~I~HyaG~V~Y~~~gflekNrD~l~~~~~~ll~~s~~~l~~-lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~ 582 (1048)
.+..|+|+||||+|+|+++||++||+|.++++++++|++|++++++ +|.+.....+ ..+.+||+++
T Consensus 480 ~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~------------~~~~~tv~~~ 547 (674)
T cd01378 480 SGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSDADS------------KKRPTTAGFK 547 (674)
T ss_pred CCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhcccccccc------------cCCCCcHHHH
Confidence 3579999999999999999999999999999999999999999774 6753221110 1234799999
Q ss_pred HHHHHHHHHHHHhccCCeeEEeecCCCCCCCCCcchhhhhhhhcccChhHHHHHhhcCCccccchhhHHHhhhccccccc
Q 001592 583 FKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQ 662 (1048)
Q Consensus 583 f~~~L~~L~~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~ 662 (1048)
|+.||+.||++|++|+||||||||||..+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|+.||++|++...
T Consensus 548 fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~ 627 (674)
T cd01378 548 IKTSANALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPKTW 627 (674)
T ss_pred HHHHHHHHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred c--CCChHHHHHHHHHhcCCCccccccCceeeeeecc-chhhhhhhh
Q 001592 663 L--SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSG-QLAALEDRR 706 (1048)
Q Consensus 663 ~--~~d~~~~~~~iL~~~~~~~~~~qvGkTKVFlr~~-~~~~LE~~r 706 (1048)
. ..|++..|+.||+.+++++++|++|+||||||.+ ++..||.+|
T Consensus 628 ~~~~~~~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 628 PTWPGDAKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred cccCCCHHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 3 3588999999999999999999999999999997 799999876
No 9
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=7e-184 Score=1658.09 Aligned_cols=668 Identities=41% Similarity=0.726 Sum_probs=618.0
Q ss_pred CCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEecCCCCCCCCCCHHHHHHHhhcCCC--CCchhHHHHHHHHH
Q 001592 36 EGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNE 113 (1048)
Q Consensus 36 ~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~y~~~~~~--~PHiyaiA~~Ay~~ 113 (1048)
+|||||+.|++|||++||++|+.||.+|+||||+|+||||||||+++|+|+++.+..|+++... |||||+||++||+.
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~~ 80 (677)
T cd01387 1 DGVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFPIYGPEQVQQYAGRALGENPPHLFAIANLAFAK 80 (677)
T ss_pred CCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999999887644 89999999999999
Q ss_pred hhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHccCC-CchHHHHHHhhhHHHHHhhcCcCCCCCCCCcccceEEEEECC
Q 001592 114 MMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG-SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSA 192 (1048)
Q Consensus 114 m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~-~~~i~~~il~sn~iLEAFGNAkT~~N~NSSRfGk~i~l~f~~ 192 (1048)
|..+++||||||||||||||||++|++|+||+.++++ +..|+++|+++||||||||||||++||||||||||++|+|+
T Consensus 81 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~f~- 159 (677)
T cd01387 81 MLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGGSAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFLE- 159 (677)
T ss_pred HHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEEec-
Confidence 9999999999999999999999999999999999754 45799999999999999999999999999999999999996
Q ss_pred CCceeeeEeeeeecCccccccccCCCccchhHHHHhhCCChhhHHhcCCCCCCCCccccCCCCcccCCcchHHHHHHHHH
Q 001592 193 FGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLME 272 (1048)
Q Consensus 193 ~g~i~Ga~i~~yLLEksRVv~~~~gErnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~ 272 (1048)
+|.|+||+|.+|||||||||+|++||||||||||||+|+++++|++|+|.++.+|+||++++|..+++.+|+++|+.++.
T Consensus 160 ~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~ 239 (677)
T cd01387 160 GGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFRRLLA 239 (677)
T ss_pred CCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHhcCceeeeeCC--CceeeecChHHHHHHHHhcCCCHHHHHHhHhcceeccCCceee
Q 001592 273 ALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDN--ENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIA 350 (1048)
Q Consensus 273 al~~lg~~~~~~~~i~~ilaaILhLGni~F~~~~~--~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~i~ 350 (1048)
||+.|||+++++..||+|||||||||||+|...+. .+.+.+.+++.+..||+||||++++|.++||++++.+++|.+.
T Consensus 240 al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~ 319 (677)
T cd01387 240 AMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVSAREIQAVAELLQISPEGLQKAITFKVTETRREKIF 319 (677)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeCCceEe
Confidence 99999999999999999999999999999987542 3457788999999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccCcceeEEecccCCccCCCCChHHHHHHHhhHHHHHHHHH
Q 001592 351 KKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNR 430 (1048)
Q Consensus 351 ~~l~~~~A~~~rdalak~LY~~LF~wlV~~iN~~l~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~ 430 (1048)
+++++++|.++||+|||+||++||+|||.+||.+|.+. ....+||||||||||+|+.|||||||||||||+||++|++
T Consensus 320 ~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~--~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~ 397 (677)
T cd01387 320 TPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT--QDTLSIAILDIYGFEDLSFNSFEQLCINYANENLQYLFNK 397 (677)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCceEEEEecCccccCCCCCHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999874 3457999999999999999999999999999999999999
Q ss_pred hhhhHhHhhhhhcCCceecccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccCC--CCc
Q 001592 431 HLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER--GRA 508 (1048)
Q Consensus 431 ~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~~~--~~~ 508 (1048)
++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||+||||||++|++||.+|++|++..+++|+.|..++ ...
T Consensus 398 ~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~~~~~~~ 477 (677)
T cd01387 398 IVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKPKMPLPE 477 (677)
T ss_pred HHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHHhccCCccccCCCCCCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998764 468
Q ss_pred eEEEeccCcccccccchhhhccCcchHHHHHHHhhccHHHHH-HhhcccCCCCCCCCCCCCCCCCccCcccHHHHHHHHH
Q 001592 509 FSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQ-LFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQL 587 (1048)
Q Consensus 509 F~I~HyaG~V~Y~~~gflekNrD~l~~~~~~ll~~s~~~l~~-lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L 587 (1048)
|+|+||||+|+|+++||++||+|.++++++++|.+|++++++ +|.....+.+.++......++...+.+||+++|+.||
T Consensus 478 F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~s~~~~~~~~~tv~~~f~~sL 557 (677)
T cd01387 478 FTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRLGKSSSGTRLYKAHTVAAKFQQSL 557 (677)
T ss_pred eEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccccCCCccccccCCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999775 6654321111111000111112334689999999999
Q ss_pred HHHHHHHhccCCeeEEeecCCCCCCCCCcchhhhhhhhcccChhHHHHHhhcCCccccchhhHHHhhhccccccccCCCh
Q 001592 588 FKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDP 667 (1048)
Q Consensus 588 ~~L~~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~~d~ 667 (1048)
+.||++|++|+||||||||||..+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|+.||++|++......++
T Consensus 558 ~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~ 637 (677)
T cd01387 558 LDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVALKLARPAP 637 (677)
T ss_pred HHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCcccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876543344
Q ss_pred HHH-HHHHHHhcCCCccccccCceeeeeeccchhhhhhhh
Q 001592 668 LSI-SVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 706 (1048)
Q Consensus 668 ~~~-~~~iL~~~~~~~~~~qvGkTKVFlr~~~~~~LE~~r 706 (1048)
... +..+++.+++++++|++|+||||||.+++..||..|
T Consensus 638 ~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 638 GDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred HHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 444 467888889999999999999999999999999875
No 10
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=5.8e-183 Score=1653.53 Aligned_cols=670 Identities=41% Similarity=0.679 Sum_probs=619.6
Q ss_pred cCCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEecCCCCCCCCCCHHHHHHHhhcC---CCCCchhHHHHHHH
Q 001592 35 LEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKV---MDSPHVYAIADTAY 111 (1048)
Q Consensus 35 ~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~y~~~~---~~~PHiyaiA~~Ay 111 (1048)
.+++|||+.|++|||++||++|+.||.+|+||||+|++|||||||+++|+|++++++.|++.. ..|||||+||++||
T Consensus 6 ~~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay 85 (692)
T cd01385 6 QREYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLPIYNPKYVRLYENQQRLGKLPPHIFAIADVAY 85 (692)
T ss_pred cCCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCCCCCHHHHHHHhcCCCcCCCCCCHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999999999999998865 23899999999999
Q ss_pred HHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHccCC---CchHHHHHHhhhHHHHHhhcCcCCCCCCCCcccceEEE
Q 001592 112 NEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG---SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEI 188 (1048)
Q Consensus 112 ~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~---~~~i~~~il~sn~iLEAFGNAkT~~N~NSSRfGk~i~l 188 (1048)
+.|..+++||||||||||||||||++|++|+||+.+++. ..+|+++|+++||||||||||||++|+||||||||++|
T Consensus 86 ~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~l 165 (692)
T cd01385 86 YNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKGYAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQV 165 (692)
T ss_pred HHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEE
Confidence 999999999999999999999999999999999999753 24799999999999999999999999999999999999
Q ss_pred EECCCCceeeeEeeeeecCccccccccCCCccchhHHHHhhCCChhhHHhcCCCCCCCCccccCCCCcccCCcchHHHHH
Q 001592 189 HFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFH 268 (1048)
Q Consensus 189 ~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 268 (1048)
+|+.+|.|+||+|++|||||||||+|++||||||||||||+|+++++|++++|.++.+|+||++++|...+++||+.+|.
T Consensus 166 ~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~f~ 245 (692)
T cd01385 166 NYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHEFE 245 (692)
T ss_pred EECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887899999999888778999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceeeeeC---CCceeeecChHHHHHHHHhcCCCHHHHHHhHhcceeccC
Q 001592 269 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVID---NENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAG 345 (1048)
Q Consensus 269 ~l~~al~~lg~~~~~~~~i~~ilaaILhLGni~F~~~~---~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~ 345 (1048)
.++.||+.|||+++++..||+|||||||||||+|...+ .++.+.+.+++.+..||.||||++++|.++||++++.++
T Consensus 246 ~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~ 325 (692)
T cd01385 246 RLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGNPEVVDLLSQLLKVKRETLMEALTKKRTVTV 325 (692)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeC
Confidence 99999999999999999999999999999999998753 345678899999999999999999999999999999999
Q ss_pred CceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCc--cCcceeEEecccCCccCCC-CChHHHHHHHhhH
Q 001592 346 KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQ--CTGRSINILDIYGFESFKK-NSFEQFCINYANE 422 (1048)
Q Consensus 346 ~e~i~~~l~~~~A~~~rdalak~LY~~LF~wlV~~iN~~l~~~~~--~~~~~IgILDi~GFE~f~~-NsfEQlcINyaNE 422 (1048)
||.+.+|++++||.++||+|||+||++||+|||++||.+|.+... ....+||||||||||+|+. |||||||||||||
T Consensus 326 ~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcINyaNE 405 (692)
T cd01385 326 NETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCINYANE 405 (692)
T ss_pred CCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999987542 2457999999999999999 9999999999999
Q ss_pred HHHHHHHHhhhhHhHhhhhhcCCceecccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccc
Q 001592 423 RLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFK 502 (1048)
Q Consensus 423 ~Lq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~ 502 (1048)
+||++|++++|+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|++||.+|++||++++++|++|.
T Consensus 406 kLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~~~~~~~~~ 485 (692)
T cd01385 406 QLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQHKDNKYYE 485 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cCC--CCceEEEeccCcccccccchhhhccCcchHHHHHHHhhccHHHH-HHhhcccCCCCCCCCCCCCCCCCccCcccH
Q 001592 503 GER--GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSV 579 (1048)
Q Consensus 503 ~~~--~~~F~I~HyaG~V~Y~~~gflekNrD~l~~~~~~ll~~s~~~l~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv 579 (1048)
+++ ...|+|+||||+|+|+++||++||+|.|+++++++|++|+++++ .+|.......... + ..+.........||
T Consensus 486 ~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~-~-~~~~~~~~~~~~tV 563 (692)
T cd01385 486 GPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVFRW-A-VLRAAFRAMAAPSV 563 (692)
T ss_pred CCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCccccccc-c-cccccccCccCCcH
Confidence 653 56899999999999999999999999999999999999999976 4775322111000 0 00000011234799
Q ss_pred HHHHHHHHHHHHHHHhccCCeeEEeecCCCCCCCCCcchhhhhhhhcccChhHHHHHhhcCCccccchhhHHHhhhcccc
Q 001592 580 GTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLS 659 (1048)
Q Consensus 580 ~~~f~~~L~~L~~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~ 659 (1048)
+++|+.||+.||++|++|+||||||||||..+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|+.||++|+|
T Consensus 564 ~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~F~~rY~~L~~ 643 (692)
T cd01385 564 SAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQYRILLP 643 (692)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCChHHHHHHHHHhcCCCccccccCceeeeeeccchhhhhhhhhh
Q 001592 660 EKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQ 708 (1048)
Q Consensus 660 ~~~~~~d~~~~~~~iL~~~~~~~~~~qvGkTKVFlr~~~~~~LE~~r~~ 708 (1048)
.... ...+.|+.||+.+++++.+|++|+||||||.+++..||+...+
T Consensus 644 ~~~~--~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~~~ 690 (692)
T cd01385 644 KGAQ--SCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETLHR 690 (692)
T ss_pred cccc--chHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHHhh
Confidence 7532 3456799999999999999999999999999999999986543
No 11
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.1e-183 Score=1542.18 Aligned_cols=720 Identities=38% Similarity=0.642 Sum_probs=666.0
Q ss_pred cCCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEecCCCCCCCCCCHHHHHHHhhcCCC--CCchhHHHHHHHH
Q 001592 35 LEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYN 112 (1048)
Q Consensus 35 ~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~y~~~~~~--~PHiyaiA~~Ay~ 112 (1048)
-.||+|++.|+.+++++++.||+.||.++.||||+|+|||+||||+.++||+++.++.|++.... |||+||||+.||+
T Consensus 7 ~~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~IYg~~ti~kYkgre~yE~~PHlfAiad~aYr 86 (1001)
T KOG0164|consen 7 EVGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLNIYGPETIEKYKGREFYERPPHLFAIADAAYR 86 (1001)
T ss_pred ccCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcCccCHHHHHHhCCeeecccCchHHHhHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999998765 7999999999999
Q ss_pred HhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHccCCC-----chHHHHHHhhhHHHHHhhcCcCCCCCCCCcccceEE
Q 001592 113 EMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS-----EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIE 187 (1048)
Q Consensus 113 ~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~-----~~i~~~il~sn~iLEAFGNAkT~~N~NSSRfGk~i~ 187 (1048)
.|.+.++||||+|||||||||||++|+||+|+|++++.+ ..+.+.+|+|||||||||||||.||||||||||||+
T Consensus 87 slk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYMD 166 (1001)
T KOG0164|consen 87 SLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYMD 166 (1001)
T ss_pred HHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhccee
Confidence 999999999999999999999999999999999998754 257889999999999999999999999999999999
Q ss_pred EEECCCCceeeeEeeeeecCccccccccCCCccchhHHHHhhCCChhhHHhcCC-CCCCCCccccCCCCcccCCcchHHH
Q 001592 188 IHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNL-KVANDYNYLNQSECLTIDGVDDAQN 266 (1048)
Q Consensus 188 l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErnfHIFYqLl~G~~~~~~~~l~L-~~~~~y~yL~~~~~~~~~~~dD~~~ 266 (1048)
|.||..|..+|+.|.+|||||||||.|.+||||||||||||.|+++.+..+|+| +++..|.||+++ |..+.+++|+.+
T Consensus 167 InFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD~~d 245 (1001)
T KOG0164|consen 167 INFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQG-SAKVSSINDASD 245 (1001)
T ss_pred eeccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhh-hhhhcccccHHH
Confidence 999999999999999999999999999999999999999999999999999999 789999999998 888999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceeeeeCCCceeeecChHHHHHHHHhcCCCHHHHHHhHhcceeccCC
Q 001592 267 FHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGK 346 (1048)
Q Consensus 267 f~~l~~al~~lg~~~~~~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~ 346 (1048)
|+.+.+||.+|||+++|+..+|+|+|||||||||+|...+ +...+.+...+..+|+||++.+++|+++||.|++.++|
T Consensus 246 fk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~e--d~~~~~~~~~l~~~aell~v~~del~~aL~~Rtvaa~~ 323 (1001)
T KOG0164|consen 246 FKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNE--DSSGIVNGAQLKYIAELLSVTGDELERALTSRTVAAGG 323 (1001)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecC--cccccchhHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999998543 33344555899999999999999999999999999999
Q ss_pred ceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCc----cCcceeEEecccCCccCCCCChHHHHHHHhhH
Q 001592 347 DSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQ----CTGRSINILDIYGFESFKKNSFEQFCINYANE 422 (1048)
Q Consensus 347 e~i~~~l~~~~A~~~rdalak~LY~~LF~wlV~~iN~~l~~~~~----~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE 422 (1048)
|.+.+++|+.||.++||||||++|+|||+|||.+||.++.+... .....||+|||||||+|+.||||||||||+||
T Consensus 324 e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcINYCNE 403 (1001)
T KOG0164|consen 324 EIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCINYCNE 403 (1001)
T ss_pred chhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987532 12368999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHhHhhhhhcCCceecccccChHHHHHHHhcCCCccccccccccCCCC-CChHHHHHHHHHHhCCCCcc
Q 001592 423 RLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPK-ATDLTFANKLKQHLGSNSCF 501 (1048)
Q Consensus 423 ~Lq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~p~Gil~lLdee~~~p~-~td~~f~~kl~~~~~~~~~f 501 (1048)
||||.|++-+++.|||||+.|||+|+.|+|.+|.-++||+|.+..|||+||||||+.|+ .||.+|+++|.+++++|++|
T Consensus 404 KLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~~H~Hy 483 (1001)
T KOG0164|consen 404 KLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLKKHPHY 483 (1001)
T ss_pred HHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhhhCCcc
Confidence 99999999999999999999999999999999999999999999999999999999996 69999999999999999999
Q ss_pred ccCC---------CCceEEEeccCcccccccchhhhccCcchHHHHHHHhhccHHHH-HHhhcccCCCCCCCCCCCCCCC
Q 001592 502 KGER---------GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGA 571 (1048)
Q Consensus 502 ~~~~---------~~~F~I~HyaG~V~Y~~~gflekNrD~l~~~~~~ll~~s~~~l~-~lf~~~~~~~~~~~~~~~~~~~ 571 (1048)
.+.. -.+|.|.||||+|+|+|.||++||+|.|..|+..+|..|++++. .+|......-..
T Consensus 484 ~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~~~~~~---------- 553 (1001)
T KOG0164|consen 484 TSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLFPEGNPDIAE---------- 553 (1001)
T ss_pred hhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhCCCCChhHHh----------
Confidence 6421 25899999999999999999999999999999999999999976 577532111000
Q ss_pred CccCcccHHHHHHHHHHHHHHHHhccCCeeEEeecCCCCCCCCCcchhhhhhhhcccChhHHHHHhhcCCccccchhhHH
Q 001592 572 LDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFA 651 (1048)
Q Consensus 572 ~~~~~~tv~~~f~~~L~~L~~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~~F~ 651 (1048)
...+.+|++++|+.|+..||..|.+-+|+||||||||+.+.|+.||...|.+|.+|+|+||.+|++|+||.+|++|+.|+
T Consensus 554 ~tkRP~Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~FL 633 (1001)
T KOG0164|consen 554 VTKRPPTAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYERFL 633 (1001)
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHHHH
Confidence 01235799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccccccCC---ChHHHHHHHHHhcCCCccccccCceeeeeecc-chhhhhhhhhhhHHH-HHHHHHhhhccchh
Q 001592 652 GRYGVLLSEKQLSQ---DPLSISVAVLQQFNVLPEMYQVGYTKLYLRSG-QLAALEDRRKQVLQA-IIRLQKCFRGYQAR 726 (1048)
Q Consensus 652 ~RY~~L~~~~~~~~---d~~~~~~~iL~~~~~~~~~~qvGkTKVFlr~~-~~~~LE~~r~~~~~a-ai~IQ~~~Rg~~aR 726 (1048)
.||+++++.+|+.+ +.++.|..+++..++. +++.+|+||||+|.+ .+..||+.|..++.. ++.||+.||||++|
T Consensus 634 ~RYKmi~~~TWPn~~~g~dkd~v~vL~e~~g~~-~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~~R 712 (1001)
T KOG0164|consen 634 LRYKMICESTWPNWRGGSDKDGVKVLLEHLGLA-GDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWLAR 712 (1001)
T ss_pred HHHHhhCcccCCCCCCCCchhHHHHHHHHhccc-hhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998843 4577888899998887 899999999999985 589999999888765 67899999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHhhHHHHHHhhhhhhhhhhhhhHHHHHHhh
Q 001592 727 SRFRELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK 791 (1048)
Q Consensus 727 r~y~~~r~aai~IQs~~Rg~~aRr~~~~~r~~aa~~iQ~~~~~~~~aai~IQs~~Rg~laRr~~~ 791 (1048)
.+|++|+.++++|+ +||.++- +..+..||..+||+..+|.|.
T Consensus 713 ~ry~rmka~~~ii~-wyR~~K~----------------------ks~v~el~~~~rg~k~~r~yg 754 (1001)
T KOG0164|consen 713 QRYRRMKASATIIR-WYRRYKL----------------------KSYVQELQRRFRGAKQMRDYG 754 (1001)
T ss_pred HHHHHHHHHHHHHH-HHHHHHH----------------------HHHHHHHHHHHHhhhhccccC
Confidence 99999999999998 7773321 246778899999999999998
No 12
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=1.4e-182 Score=1655.60 Aligned_cols=664 Identities=39% Similarity=0.664 Sum_probs=617.1
Q ss_pred cCCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEecCCCCCCC-CCCHHHHHHHhhcCCC--CCchhHHHHHHH
Q 001592 35 LEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYRQKVMD--SPHVYAIADTAY 111 (1048)
Q Consensus 35 ~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-ly~~~~~~~y~~~~~~--~PHiyaiA~~Ay 111 (1048)
.++||||+.|++|||++||++|+.||.++.||||+|+||||||||+++| +|+++.+..|+++... |||||+||++||
T Consensus 3 ~~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay 82 (717)
T cd01382 3 KKDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAY 82 (717)
T ss_pred CCCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999 9999999999987654 799999999999
Q ss_pred HHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHccCCCchHHHHHHhhhHHHHHhhcCcCCCCCCCCcccceEEEEEC
Q 001592 112 NEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFS 191 (1048)
Q Consensus 112 ~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~~~i~~~il~sn~iLEAFGNAkT~~N~NSSRfGk~i~l~f~ 191 (1048)
++|.++++||||||||||||||||++|++|+||+.+++++..|+++|+++||||||||||||++||||||||||++|+||
T Consensus 83 ~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~ 162 (717)
T cd01382 83 RDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFN 162 (717)
T ss_pred HHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEEEEEC
Confidence 99999999999999999999999999999999999987767899999999999999999999999999999999999999
Q ss_pred CCCceeeeEeeeeecCccccccccCCCccchhHHHHhhCCChhhHHhcCCCCCCCCccccCCC-----------------
Q 001592 192 AFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSE----------------- 254 (1048)
Q Consensus 192 ~~g~i~Ga~i~~yLLEksRVv~~~~gErnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~----------------- 254 (1048)
..|+|+||+|.+|||||||||.|++||||||||||||+|+++++|+.|+|.++.+|+||+++.
T Consensus 163 ~~g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~~~~~~ 242 (717)
T cd01382 163 EKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQILQNR 242 (717)
T ss_pred CCCCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCcccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999752
Q ss_pred ---------CcccCCcchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceeeeeCCC-ce--eeecChHHHHHH
Q 001592 255 ---------CLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNE-NH--VEVIADEAVTTA 322 (1048)
Q Consensus 255 ---------~~~~~~~dD~~~f~~l~~al~~lg~~~~~~~~i~~ilaaILhLGni~F~~~~~~-~~--~~~~~~~~l~~~ 322 (1048)
|..++++||+++|+.++.||++|||+++++..||+|||||||||||+|...++. +. +...+.+.+..|
T Consensus 243 ~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~ 322 (717)
T cd01382 243 KSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKNQSEQSLEYC 322 (717)
T ss_pred cccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecCCCHHHHHHH
Confidence 234578899999999999999999999999999999999999999999875432 22 334567899999
Q ss_pred HHhcCCCHHHHHHhHhcceec-----cCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccCcceeE
Q 001592 323 AMLMGCSSDELMLALSTHKIQ-----AGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSIN 397 (1048)
Q Consensus 323 a~LLgv~~~~L~~~Lt~~~~~-----~~~e~i~~~l~~~~A~~~rdalak~LY~~LF~wlV~~iN~~l~~~~~~~~~~Ig 397 (1048)
|.||||++++|.++||++++. ++|+.+.++++++||.++||+|||+||++||+|||.+||.+|.... ...+||
T Consensus 323 a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~--~~~~Ig 400 (717)
T cd01382 323 AELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFET--SSNFIG 400 (717)
T ss_pred HHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCcEEE
Confidence 999999999999999999988 7889999999999999999999999999999999999999998643 457999
Q ss_pred EecccCCccCCCCChHHHHHHHhhHHHHHHHHHhhhhHhHhhhhhcCCceecccccChHHHHHHHhcCCCcccccccccc
Q 001592 398 ILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEES 477 (1048)
Q Consensus 398 ILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~p~Gil~lLdee~ 477 (1048)
||||||||+|+.|||||||||||||+||++|++++|..||++|.+|||+|++|+|.||++|||||+++|.|||++|||||
T Consensus 401 iLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~ 480 (717)
T cd01382 401 VLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEEN 480 (717)
T ss_pred EEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhCCCCccccCC------------CCceEEEeccCcccccccchhhhccCcchHHHHHHHhhcc
Q 001592 478 NFPKATDLTFANKLKQHLGSNSCFKGER------------GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCT 545 (1048)
Q Consensus 478 ~~p~~td~~f~~kl~~~~~~~~~f~~~~------------~~~F~I~HyaG~V~Y~~~gflekNrD~l~~~~~~ll~~s~ 545 (1048)
++|++||.+|++||++.+++|++|..++ +..|+|+||||+|+|+++||++||+|.|+++++++|++|+
T Consensus 481 ~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~ll~~S~ 560 (717)
T cd01382 481 RLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESK 560 (717)
T ss_pred cCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHHHHhCc
Confidence 9999999999999999999998875432 2479999999999999999999999999999999999999
Q ss_pred HHHHH-HhhcccCCCCCCCCCCCCCCCCccCcccHHHHHHHHHHHHHHHHhccCCeeEEeecCCCCCCCCCcchhhhhhh
Q 001592 546 CQVLQ-LFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQ 624 (1048)
Q Consensus 546 ~~l~~-lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~L~~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~Q 624 (1048)
+++++ +|..........+ .....+..||+++|+.||+.||++|++|+||||||||||..+.|+.||.++|++|
T Consensus 561 n~~i~~lf~~~~~~~~~~~------~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~Q 634 (717)
T cd01382 561 DKFLRSLFESSTNNNDTKQ------KAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQ 634 (717)
T ss_pred hHHHHHHhccccccccccc------cccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHH
Confidence 99874 7764321111000 0012345799999999999999999999999999999999999999999999999
Q ss_pred hcccChhHHHHHhhcCCccccchhhHHHhhhccccccccCCChHHHHHHHHHhcCCCccccccCceeeeeeccchhhhhh
Q 001592 625 FRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALED 704 (1048)
Q Consensus 625 Lr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~~d~~~~~~~iL~~~~~~~~~~qvGkTKVFlr~~~~~~LE~ 704 (1048)
|||+||||+|||+|.|||+|++|.+|++||+.|++......|++..|+.||+.+++++++|++|+||||||.++++.||.
T Consensus 635 Lr~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~ 714 (717)
T cd01382 635 LQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLVRLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQ 714 (717)
T ss_pred HHhcchHHHHHHHHccCchhhhHHHHHHHHHHhCCcccCCCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHH
Confidence 99999999999999999999999999999999998777667899999999999999999999999999999999999998
Q ss_pred hh
Q 001592 705 RR 706 (1048)
Q Consensus 705 ~r 706 (1048)
..
T Consensus 715 ~~ 716 (717)
T cd01382 715 IM 716 (717)
T ss_pred Hh
Confidence 64
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=1.1e-179 Score=1630.80 Aligned_cols=665 Identities=54% Similarity=0.868 Sum_probs=629.3
Q ss_pred CCCccCCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEecCCCCCCCCCCHHHHHHHhhcCC--CCCchhHHHH
Q 001592 31 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVM--DSPHVYAIAD 108 (1048)
Q Consensus 31 np~~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~y~~~~~--~~PHiyaiA~ 108 (1048)
||+..++++||+.|++|||++||++|+.||.+++||||+|++|||||||+++|+|+++.+..|+++.. .|||||+||+
T Consensus 1 np~~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~y~~~~~~~y~~~~~~~~~PHifavA~ 80 (677)
T smart00242 1 NPPKFEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIAD 80 (677)
T ss_pred CCcccCCcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCCCCCHHHHHHccCCCCCCCCCCHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999998754 3799999999
Q ss_pred HHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHccCC---CchHHHHHHhhhHHHHHhhcCcCCCCCCCCcccce
Q 001592 109 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG---SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKL 185 (1048)
Q Consensus 109 ~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~---~~~i~~~il~sn~iLEAFGNAkT~~N~NSSRfGk~ 185 (1048)
+||+.|+.+++||||||||||||||||++|++|+||+.++++ ...|+++|+++||||||||||||++|+||||||||
T Consensus 81 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~ 160 (677)
T smart00242 81 NAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNTSVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKF 160 (677)
T ss_pred HHHHHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCCccccHHHHHHHHHHHHHHhhccccCCCCCccchhee
Confidence 999999999999999999999999999999999999999875 35799999999999999999999999999999999
Q ss_pred EEEEECCCCceeeeEeeeeecCccccccccCCCccchhHHHHhhCCChhhHHhcCCCCCCCCccccCCCCcccCCcchHH
Q 001592 186 IEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQ 265 (1048)
Q Consensus 186 i~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~ 265 (1048)
++|+|+.+|.|+||+|.+||||||||+.|++||||||||||||+|++++++++|+|.++.+|+||++++|..++++||++
T Consensus 161 ~~l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~ 240 (677)
T smart00242 161 IEIHFDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAE 240 (677)
T ss_pred EEEEECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceeeeeCCCce-eeecChHHHHHHHHhcCCCHHHHHHhHhcceecc
Q 001592 266 NFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENH-VEVIADEAVTTAAMLMGCSSDELMLALSTHKIQA 344 (1048)
Q Consensus 266 ~f~~l~~al~~lg~~~~~~~~i~~ilaaILhLGni~F~~~~~~~~-~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~ 344 (1048)
+|+.++.||+.|||+++++..||+|||||||||||+|...++++. ..+.+.+.++.||.||||++++|.++|+++++.+
T Consensus 241 ~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 320 (677)
T smart00242 241 EFKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVKDKEELENAAELLGVDPEELEKALTKRKIKT 320 (677)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEe
Confidence 999999999999999999999999999999999999987654432 3478899999999999999999999999999999
Q ss_pred CCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccCcceeEEecccCCccCCCCChHHHHHHHhhHHH
Q 001592 345 GKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERL 424 (1048)
Q Consensus 345 ~~e~i~~~l~~~~A~~~rdalak~LY~~LF~wlV~~iN~~l~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~L 424 (1048)
++|.+.+++++++|.++||+|||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+|
T Consensus 321 ~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~-~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkL 399 (677)
T smart00242 321 GGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKD-GSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKL 399 (677)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCceEEEEEecccccccccCCHHHHHhHhhHHHH
Confidence 999999999999999999999999999999999999999998754 4567999999999999999999999999999999
Q ss_pred HHHHHHhhhhHhHhhhhhcCCceecccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccC
Q 001592 425 QQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGE 504 (1048)
Q Consensus 425 q~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~~ 504 (1048)
|++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||++|++||++++++|++|..+
T Consensus 400 q~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~~~~ 479 (677)
T smart00242 400 QQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTHEKHPHFSKP 479 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ---CCCceEEEeccCcccccccchhhhccCcchHHHHHHHhhccHHHHH-HhhcccCCCCCCCCCCCCCCCCccCcccHH
Q 001592 505 ---RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQ-LFASKMLKPSPKPAASSQPGALDTQKQSVG 580 (1048)
Q Consensus 505 ---~~~~F~I~HyaG~V~Y~~~gflekNrD~l~~~~~~ll~~s~~~l~~-lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 580 (1048)
.+..|+|+||||+|+|+++||++||+|.++++++++|++|++++++ +|........ ...+.+||+
T Consensus 480 ~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~-----------~~~~~~tv~ 548 (677)
T smart00242 480 RKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNAG-----------SKKRFRTVG 548 (677)
T ss_pred CCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhcccccccc-----------ccCCCCcHH
Confidence 3578999999999999999999999999999999999999999764 6754321110 122458999
Q ss_pred HHHHHHHHHHHHHHhccCCeeEEeecCCCCCCCCCcchhhhhhhhcccChhHHHHHhhcCCccccchhhHHHhhhccccc
Q 001592 581 TKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE 660 (1048)
Q Consensus 581 ~~f~~~L~~L~~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~~ 660 (1048)
++|+.||+.||++|++|+||||||||||..+.|+.||.++|++||||+||||++||+|.|||+|++|.+|+.||++|++.
T Consensus 549 ~~fk~~L~~L~~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~~~ 628 (677)
T smart00242 549 SQFKESLNKLMDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLLPD 628 (677)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cccC--CChHHHHHHHHHhcCCCccccccCceeeeeeccchhhhhhhhh
Q 001592 661 KQLS--QDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRK 707 (1048)
Q Consensus 661 ~~~~--~d~~~~~~~iL~~~~~~~~~~qvGkTKVFlr~~~~~~LE~~r~ 707 (1048)
.... .|+++.|+.||+.+++++.+|++|+||||||.+++..||+.|.
T Consensus 629 ~~~~~~~~~k~~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 629 TWPPWGGDAKEACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred cccccCCCHHHHHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 6543 3689999999999999999999999999999999999999873
No 14
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.6e-179 Score=1695.05 Aligned_cols=750 Identities=43% Similarity=0.713 Sum_probs=687.4
Q ss_pred eeeecCCeEEEEecCCcEEE-EeCCCCcCCCCCccCCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEecCCCC
Q 001592 2 IQSTSGDEAFVLLSNGNVVK-VSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFK 80 (1048)
Q Consensus 2 i~~~~~~~~~v~~~~g~~~~-v~~~~~~~~np~~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iYT~~G~iLiavNP~k 80 (1048)
|+++.|++|+|.+.+|.+++ |+.++++|+|||.++.++||+.|++||||+|||||++||..++||||.|..||+||||+
T Consensus 47 i~~~~~~~v~v~~~~~~~~~~v~~~~v~~~NPPkfdk~eDMa~LT~lNeasVL~nL~~RY~~~lIyTYSGLFcVviNPyk 126 (1930)
T KOG0161|consen 47 IKSEEGEKVTVETEEGGTLTQVKEDDVQKMNPPKFDKVEDMAELTFLNEASVLHNLKQRYASDLIYTYSGLFCVVINPYK 126 (1930)
T ss_pred eeccCCCceEEEEcCCceeEEecHHHcCcCCCCCccccccHHHhcccChHHHHhhHHHHHHhChHHHcccceeEEecCCc
Confidence 77888888999999888877 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHhhcCC--CCCchhHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHccCCC-------
Q 001592 81 AVPIYGNKFITAYRQKVM--DSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS------- 151 (1048)
Q Consensus 81 ~l~ly~~~~~~~y~~~~~--~~PHiyaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~------- 151 (1048)
++|||+++++++|+++.. .||||||||+.||+.|+.++.||||+|+|||||||||+||.||+|||.+++++
T Consensus 127 ~lpiYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~renQSiLiTGESGAGKTeNTKkVIqyla~va~~~~~~~~~~ 206 (1930)
T KOG0161|consen 127 RLPIYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDRENQSILITGESGAGKTENTKKVIQYLASVASSSTKKVKIE 206 (1930)
T ss_pred CCCCCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCCCceEeeecCCCCCcchhHHHHHHHHHHHhhccccCCCCC
Confidence 999999999999999754 48999999999999999999999999999999999999999999999998753
Q ss_pred chHHHHHHhhhHHHHHhhcCcCCCCCCCCcccceEEEEECCCCceeeeEeeeeecCccccccccCCCccchhHHHHhhCC
Q 001592 152 EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGA 231 (1048)
Q Consensus 152 ~~i~~~il~sn~iLEAFGNAkT~~N~NSSRfGk~i~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErnfHIFYqLl~G~ 231 (1048)
+.++++|+++||||||||||+|++|+|||||||||+|+|+..|.|+||.|++||||||||++|++||||||||||||+|.
T Consensus 207 ~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLLEKsRv~~Q~~~Er~yhiFyqlls~~ 286 (1930)
T KOG0161|consen 207 GTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLLEKSRVIRQAPGERNYHIFYQLLSGA 286 (1930)
T ss_pred CChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHHHHhHhhccCcchhHHHHHHHHHhCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHhcCCCC-CCCCccccCCCCcccCCcchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceeeeeCCCce
Q 001592 232 PSFLKERLNLKV-ANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENH 310 (1048)
Q Consensus 232 ~~~~~~~l~L~~-~~~y~yL~~~~~~~~~~~dD~~~f~~l~~al~~lg~~~~~~~~i~~ilaaILhLGni~F~~~~~~~~ 310 (1048)
++.++..|.|.+ +.+|.|+.++.. ++||+||+++|..+..||+++||+++++.+||+|+||||||||+.|....+.+.
T Consensus 287 ~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~eef~~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~q 365 (1930)
T KOG0161|consen 287 DPELKEELLLSDNVKDYKFLSNGES-TIPGVDDAEEFQETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQ 365 (1930)
T ss_pred CHHHHHHHhhcccchhhhhhccccC-CCCCcchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccccccc
Confidence 999999999965 899999999876 899999999999999999999999999999999999999999999998767788
Q ss_pred eeecChHHHHHHHHhcCCCHHHHHHhHhcceeccCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCc
Q 001592 311 VEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQ 390 (1048)
Q Consensus 311 ~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~i~~~l~~~~A~~~rdalak~LY~~LF~wlV~~iN~~l~~~~~ 390 (1048)
+.+.+.+.+..+|.||||+.++|.++|+++++++|++.+.+..+.+|+..+..+|||++|++||.|||.+||.+|... .
T Consensus 366 a~~~~~~~a~ka~~llg~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~alAk~lYerlF~wlV~riN~sld~~-~ 444 (1930)
T KOG0161|consen 366 AEFDNTEVADKACHLLGINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVEALAKALYERLFGWLVKRINKSLDSK-Q 444 (1930)
T ss_pred cCCCCchHHHHHHHHcCCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999976 4
Q ss_pred cCcceeEEecccCCccCCCCChHHHHHHHhhHHHHHHHHHhhhhHhHhhhhhcCCceeccccc-ChHHHHHHHhcCCCcc
Q 001592 391 CTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFE-DNEECLNLIEKKPLGV 469 (1048)
Q Consensus 391 ~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~f~~eq~~y~~EgI~~~~i~~~-dn~~~l~li~~~p~Gi 469 (1048)
....|||||||+|||+|+.||||||||||+||+||||||+|+|.+||++|.+|||.|++|+|- |-++|+|||++ |+||
T Consensus 445 ~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi 523 (1930)
T KOG0161|consen 445 QRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGI 523 (1930)
T ss_pred ccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhH
Confidence 567899999999999999999999999999999999999999999999999999999999995 89999999996 6899
Q ss_pred ccccccccCCCCCChHHHHHHHHHHh-CCCCccccCC----CCceEEEeccCcccccccchhhhccCcchHHHHHHHhhc
Q 001592 470 LSLLDEESNFPKATDLTFANKLKQHL-GSNSCFKGER----GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSC 544 (1048)
Q Consensus 470 l~lLdee~~~p~~td~~f~~kl~~~~-~~~~~f~~~~----~~~F~I~HyaG~V~Y~~~gflekNrD~l~~~~~~ll~~s 544 (1048)
||+|||||.+|++||.+|+.||...+ +.||.|.+++ ..+|.|.||||+|.|++.||++||+|+++..++.+|..|
T Consensus 524 ~slLdEEc~~PkAtd~tf~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V~Y~~~~WL~Knkdpln~~v~~ll~~s 603 (1930)
T KOG0161|consen 524 LSLLDEECVVPKATDKTFLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTVDYNVDGWLEKNKDPLNDNVVSLLKQS 603 (1930)
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHhhccCccccCcccccchhhhheeeecceeccCccchhhcCCCCchHHHHHHHHhc
Confidence 99999999999999999999998777 8999998873 469999999999999999999999999999999999998
Q ss_pred cHHH-HHHhhcccCCCCCCCCCCCC-CCCCccCcccHHHHHHHHHHHHHHHHhccCCeeEEeecCCCCCCCCCcchhhhh
Q 001592 545 TCQV-LQLFASKMLKPSPKPAASSQ-PGALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVL 622 (1048)
Q Consensus 545 ~~~l-~~lf~~~~~~~~~~~~~~~~-~~~~~~~~~tv~~~f~~~L~~L~~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~ 622 (1048)
++.+ ..+|.+........ ..|.. ..+..+.+.||+..|+.||+.||.+|++|+|||||||.||..+.||.+|.++|+
T Consensus 604 ~~~~v~~l~~~~~~~~~~~-~~~~~~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl 682 (1930)
T KOG0161|consen 604 TNKLVSSLFQDYAGAAAAA-KGGEALKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVL 682 (1930)
T ss_pred ccHHHHHHhhhhhccchhh-hhhhhhcccCCcchhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHH
Confidence 8775 46887632111000 00000 011233568999999999999999999999999999999999999999999999
Q ss_pred hhhcccChhHHHHHhhcCCccccchhhHHHhhhccccccccC--CChHHHHHHHHHhcCCCccccccCceeeeeeccchh
Q 001592 623 QQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLS--QDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLA 700 (1048)
Q Consensus 623 ~QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~--~d~~~~~~~iL~~~~~~~~~~qvGkTKVFlr~~~~~ 700 (1048)
.||+|.||||.|||+|.|||.|++|.+|..||.++.+...+. .|.+..|..|+..+.++..-|++|.||||||.|+++
T Consensus 683 ~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla 762 (1930)
T KOG0161|consen 683 NQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLA 762 (1930)
T ss_pred HHhhccCcHHHHHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHH
Confidence 999999999999999999999999999999999444443332 477889999999999999999999999999999999
Q ss_pred hhhhhhhhhHHH-HHHHHHhhhccchhhhhhhhh---hHHHHHHHHHHHHHHHHHHHhh
Q 001592 701 ALEDRRKQVLQA-IIRLQKCFRGYQARSRFRELC---NGVITLQSFARGENTRRRHASL 755 (1048)
Q Consensus 701 ~LE~~r~~~~~a-ai~IQ~~~Rg~~aRr~y~~~r---~aai~IQs~~Rg~~aRr~~~~~ 755 (1048)
.||..|...+.. ++.+|+.+|||++|+.|.++. .++.+||..+|.|...+.|...
T Consensus 763 ~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~ 821 (1930)
T KOG0161|consen 763 HLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWW 821 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHH
Confidence 999999988865 457788888888888877663 5677777777776655554433
No 15
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=1.7e-178 Score=1602.82 Aligned_cols=635 Identities=40% Similarity=0.673 Sum_probs=595.3
Q ss_pred CccccccCCCCCchhHHHHHHHHhhcCccccccCCceEecCCCCCCCCCCHHHHHHHhhcCC--CCCchhHHHHHHHHHh
Q 001592 37 GVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVM--DSPHVYAIADTAYNEM 114 (1048)
Q Consensus 37 ~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~y~~~~~--~~PHiyaiA~~Ay~~m 114 (1048)
++|||+.|++|||++||++|+.||.+|+||||+|++|||||||+++|+|+++.+..|+++.. .|||||+||+.||+.|
T Consensus 1 ~~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 80 (653)
T cd01379 1 DMDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLGLYTTQHSRLYTGQKRSSNPPHIFAIADAAYQSL 80 (653)
T ss_pred CcchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999987643 4899999999999999
Q ss_pred hhCCCceEEEEcCCCCCChhhHHHHHHHHHHHccCC-CchHHHHHHhhhHHHHHhhcCcCCCCCCCCcccceEEEEECCC
Q 001592 115 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG-SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAF 193 (1048)
Q Consensus 115 ~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~-~~~i~~~il~sn~iLEAFGNAkT~~N~NSSRfGk~i~l~f~~~ 193 (1048)
...++||||||||||||||||++|++|+||+.++.+ ...|+++|+++||||||||||||++||||||||||++|+|+.+
T Consensus 81 ~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~f~~~ 160 (653)
T cd01379 81 VTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKANNRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTRS 160 (653)
T ss_pred HhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEEECCC
Confidence 999999999999999999999999999999998764 3479999999999999999999999999999999999999999
Q ss_pred CceeeeEeeeeecCccccccccCCCccchhHHHHhhCCChhhH-HhcCCCCCCCCccccCCCCcccCCcc----hHHHHH
Q 001592 194 GKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLK-ERLNLKVANDYNYLNQSECLTIDGVD----DAQNFH 268 (1048)
Q Consensus 194 g~i~Ga~i~~yLLEksRVv~~~~gErnfHIFYqLl~G~~~~~~-~~l~L~~~~~y~yL~~~~~~~~~~~d----D~~~f~ 268 (1048)
|+|+||+|++|||||||||+|++||||||||||||+|++++++ +.|+|.++..|+||++++|..+++++ |+++|.
T Consensus 161 g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~~~f~ 240 (653)
T cd01379 161 GAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYKDQFE 240 (653)
T ss_pred CcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHHHHHH
Confidence 9999999999999999999999999999999999999998776 78999988999999999887666664 578999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceeeeeCC---CceeeecChHHHHHHHHhcCCCHHHHHHhHhcceeccC
Q 001592 269 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDN---ENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAG 345 (1048)
Q Consensus 269 ~l~~al~~lg~~~~~~~~i~~ilaaILhLGni~F~~~~~---~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~ 345 (1048)
.++.||..|||+++++..||+|||||||||||+|...+. .+.+.+.+.+.+..||.||||++++|.++||++++.++
T Consensus 241 ~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~~~~l~~~A~LLgv~~~~L~~~L~~~~~~~~ 320 (653)
T cd01379 241 QIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSNVAALENAASLLCIRSDELQEALTSHCVVTR 320 (653)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEeC
Confidence 999999999999999999999999999999999987543 24577889999999999999999999999999999999
Q ss_pred CceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCc----cCcceeEEecccCCccCCCCChHHHHHHHhh
Q 001592 346 KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQ----CTGRSINILDIYGFESFKKNSFEQFCINYAN 421 (1048)
Q Consensus 346 ~e~i~~~l~~~~A~~~rdalak~LY~~LF~wlV~~iN~~l~~~~~----~~~~~IgILDi~GFE~f~~NsfEQlcINyaN 421 (1048)
|+.+.++++++||.++||||||+||++||+|||.+||.+|.+... ....+||||||||||+|+.||||||||||||
T Consensus 321 ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaN 400 (653)
T cd01379 321 GETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQLCINIAN 400 (653)
T ss_pred CceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHHHHhhhhH
Confidence 999999999999999999999999999999999999999987542 2356999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHhHhhhhhcCCceecccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCcc
Q 001592 422 ERLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCF 501 (1048)
Q Consensus 422 E~Lq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f 501 (1048)
||||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||.+|++|++..+++ +.|
T Consensus 401 EkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~~~~~-~~~ 479 (653)
T cd01379 401 EQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDNLKS-KFF 479 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHHhcCC-CCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988864 445
Q ss_pred ccCC--CCceEEEeccCcccccccchhhhccCcchHHHHHHHhhccHHHHHHhhcccCCCCCCCCCCCCCCCCccCcccH
Q 001592 502 KGER--GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFASKMLKPSPKPAASSQPGALDTQKQSV 579 (1048)
Q Consensus 502 ~~~~--~~~F~I~HyaG~V~Y~~~gflekNrD~l~~~~~~ll~~s~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv 579 (1048)
..++ ...|+|+||||+|+|+++||++||+|.++.+++++|++| +||
T Consensus 480 ~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S--------------------------------~tv 527 (653)
T cd01379 480 WRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS--------------------------------QTV 527 (653)
T ss_pred cCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC--------------------------------cHH
Confidence 4332 468999999999999999999999999999999998765 379
Q ss_pred HHHHHHHHHHHHHHHhccCCeeEEeecCCCCCCCCCcchhhhhhhhcccChhHHHHHhhcCCccccchhhHHHhhhcccc
Q 001592 580 GTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLS 659 (1048)
Q Consensus 580 ~~~f~~~L~~L~~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~ 659 (1048)
+++||.||++||++|.+|+||||||||||..+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|+.||++|++
T Consensus 528 ~~~fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~ 607 (653)
T cd01379 528 ASYFRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFLAY 607 (653)
T ss_pred HHHHHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccc-CCChHHHHHHHHHhcCCCccccccCceeeeeeccchhhhhhhh
Q 001592 660 EKQL-SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 706 (1048)
Q Consensus 660 ~~~~-~~d~~~~~~~iL~~~~~~~~~~qvGkTKVFlr~~~~~~LE~~r 706 (1048)
.... ..+.+..|..||+.+++ ++|++|+||||||.++++.||..|
T Consensus 608 ~~~~~~~~~~~~~~~il~~~~~--~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 608 RFEEEPVSSPESCALILEKAKL--DNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred ccccccCChHHHHHHHHHhCCC--CCEEecceEEEEecCHHHHHHhcC
Confidence 6543 34778899999998776 479999999999999999999864
No 16
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=8.2e-178 Score=1618.75 Aligned_cols=669 Identities=50% Similarity=0.811 Sum_probs=620.9
Q ss_pred CccccccCCCCCchhHHHHHHHHhhcCccccccCCceEecCCCCCCCCCCHHHHHHHhhcCCC--CCchhHHHHHHHHHh
Q 001592 37 GVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEM 114 (1048)
Q Consensus 37 ~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~y~~~~~~--~PHiyaiA~~Ay~~m 114 (1048)
+++||+.|++|||++||++|+.||.+|+||||+|++|||||||+++|+|+++.++.|+++... |||||+||++||+.|
T Consensus 1 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m 80 (679)
T cd00124 1 GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLPNYGPETIRKYRGKSRSELPPHVFAIADRAYRNM 80 (679)
T ss_pred CCcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999987643 799999999999999
Q ss_pred hhCCCceEEEEcCCCCCChhhHHHHHHHHHHHccCC-CchHHHHHHhhhHHHHHhhcCcCCCCCCCCcccceEEEEECCC
Q 001592 115 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG-SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAF 193 (1048)
Q Consensus 115 ~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~-~~~i~~~il~sn~iLEAFGNAkT~~N~NSSRfGk~i~l~f~~~ 193 (1048)
+.+++||||||||||||||||++|++|+||+.++++ ...|+++|+++||||||||||||++|+||||||||++|+|+.+
T Consensus 81 ~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~f~~~ 160 (679)
T cd00124 81 LRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSNDTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQFDET 160 (679)
T ss_pred HhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCCcchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEEECCC
Confidence 999999999999999999999999999999999875 4579999999999999999999999999999999999999999
Q ss_pred CceeeeEeeeeecCccccccccCCCccchhHHHHhhCCChhhHHhcCCCCCCCCccccCCCCcccCCcchHHHHHHHHHH
Q 001592 194 GKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEA 273 (1048)
Q Consensus 194 g~i~Ga~i~~yLLEksRVv~~~~gErnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~a 273 (1048)
|.|+||+|.+|||||||||+|++||||||||||||+|++++++++|+|.++.+|+||++++|..++++||+++|..++.|
T Consensus 161 g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~a 240 (679)
T cd00124 161 GKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEELKEA 240 (679)
T ss_pred CcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHhcCceeeeeCCCc--eeeecChHHHHHHHHhcCCCHHHHHHhHhcceeccCCceeee
Q 001592 274 LDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNEN--HVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAK 351 (1048)
Q Consensus 274 l~~lg~~~~~~~~i~~ilaaILhLGni~F~~~~~~~--~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~i~~ 351 (1048)
|+.|||+++++..||+|||||||||||+|...++++ .+.+.+.+.++.||.||||++++|.++||++++.++|+.+.+
T Consensus 241 l~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~ 320 (679)
T cd00124 241 LKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVKNTEVLSKAAELLGLDPEELEEALTYKVTKVGGEVITI 320 (679)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecCCHHHHHHHHHHhCCCHHHHHHHhhccEEEeCCceEEe
Confidence 999999999999999999999999999999765544 378899999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccCcceeEEecccCCccCCCCChHHHHHHHhhHHHHHHHHHh
Q 001592 352 KLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRH 431 (1048)
Q Consensus 352 ~l~~~~A~~~rdalak~LY~~LF~wlV~~iN~~l~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~ 431 (1048)
++++++|.++||+|||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+||++|+++
T Consensus 321 ~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~-~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq~~f~~~ 399 (679)
T cd00124 321 PLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKD-GRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFNQH 399 (679)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceeeEEeccccccCCCCCHHHHhcccchHHHHHHHHHH
Confidence 99999999999999999999999999999999998753 34679999999999999999999999999999999999999
Q ss_pred hhhHhHhhhhhcCCceecccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccC---CCCc
Q 001592 432 LFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGE---RGRA 508 (1048)
Q Consensus 432 ~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~~---~~~~ 508 (1048)
+|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||.+|++||++.+++|++|... .+..
T Consensus 400 ~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~~~~~~~ 479 (679)
T cd00124 400 VFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSNNAFYPAKKNAPTE 479 (679)
T ss_pred HHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCcccccCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986332 3579
Q ss_pred eEEEeccCcccccccchhhhccCcchHHHHHHHhhccHHHHH-HhhcccCCCCCCCCCCCCCCCCccCcccHHHHHHHHH
Q 001592 509 FSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQ-LFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQL 587 (1048)
Q Consensus 509 F~I~HyaG~V~Y~~~gflekNrD~l~~~~~~ll~~s~~~l~~-lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L 587 (1048)
|+|+||||+|+|+++||++||+|.++++++++|++|++++++ +|.......+..+......+....+.+||+++|+.||
T Consensus 480 F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~qL 559 (679)
T cd00124 480 FTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSSTGSTSSKGKKKKGQTVGSQFRTSL 559 (679)
T ss_pred eEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccccccccccccccCCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999764 7754322111100000011112335689999999999
Q ss_pred HHHHHHHhccCCeeEEeecCCCCCCCCCcchhhhhhhhcccChhHHHHHhhcCCccccchhhHHHhhhccccccccCC-C
Q 001592 588 FKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQ-D 666 (1048)
Q Consensus 588 ~~L~~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~~-d 666 (1048)
+.||++|++|+||||||||||+.+.|+.||.++|++||||+||||++||+|.|||+|++|.+|+.||++|++...... .
T Consensus 560 ~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~~~~~~~~~ 639 (679)
T cd00124 560 DALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAPDLLEKVSL 639 (679)
T ss_pred HHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCcccccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998776533 2
Q ss_pred hHHHHHHHHHhcCCCccccccCceeeeeeccchhhhhhhh
Q 001592 667 PLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 706 (1048)
Q Consensus 667 ~~~~~~~iL~~~~~~~~~~qvGkTKVFlr~~~~~~LE~~r 706 (1048)
....|..+|..+++++++|++|+||||||.+++..||..|
T Consensus 640 ~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 640 TKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred cHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 2233899999999999999999999999999999999865
No 17
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=7.4e-178 Score=1493.33 Aligned_cols=706 Identities=39% Similarity=0.656 Sum_probs=659.8
Q ss_pred CccCCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEecCCCCCCCCCCHHHHHHHhhcCCC--CCchhHHHHHH
Q 001592 33 DILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTA 110 (1048)
Q Consensus 33 ~~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~y~~~~~~--~PHiyaiA~~A 110 (1048)
-.-.|||||+.|+-++|.+|..||+.||..+.||||+|+|||+||||+.+|+|+++.+..|+++... ||||||+|+.+
T Consensus 15 ~k~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~~ft~~~~~~YqG~~q~E~pPHiyAladnm 94 (1106)
T KOG0162|consen 15 KKHVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMPYFTEKEMELYQGAAQYENPPHIYALADNM 94 (1106)
T ss_pred ceeccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccccchHHHHHHhhchhhccCCchhhhhHHHH
Confidence 3457899999999999999999999999999999999999999999999999999999999987654 89999999999
Q ss_pred HHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHccCCC---chHHHHHHhhhHHHHHhhcCcCCCCCCCCcccceEE
Q 001592 111 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS---EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIE 187 (1048)
Q Consensus 111 y~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~---~~i~~~il~sn~iLEAFGNAkT~~N~NSSRfGk~i~ 187 (1048)
|++|....+|||||||||||||||+++|.||+|++.+++++ ..|.+-||++||+|||||||||+||+||||||||++
T Consensus 95 Y~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~~g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~E 174 (1106)
T KOG0162|consen 95 YRNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSGGGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYLE 174 (1106)
T ss_pred HHHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhccCCcchhhhhhHhhccchHHHHhcchhhhccCCcccccceEE
Confidence 99999999999999999999999999999999999999764 367889999999999999999999999999999999
Q ss_pred EEECCCCceeeeEeeeeecCccccccccCCCccchhHHHHhhCCChhhHHhcCCCCCCCCccccCCCCcccCCcchHHHH
Q 001592 188 IHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNF 267 (1048)
Q Consensus 188 l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f 267 (1048)
|+|+..|..+|++|.+|||||||||.|.+|||||||||||+.|++.+.|..|++..+..|.||+.++|+.++++||..+|
T Consensus 175 i~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kdf 254 (1106)
T KOG0162|consen 175 IQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKDF 254 (1106)
T ss_pred EEecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceeeeeCCCceeeecChHHHHHHHHhcCCCHHHHHHhHhcceecc---
Q 001592 268 HNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQA--- 344 (1048)
Q Consensus 268 ~~l~~al~~lg~~~~~~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~--- 344 (1048)
++++.||+++|+.++||+.||++||+|||||||.|.+ .++.+.|.+.+.++-.|.||||+...|.+.||.|.|..
T Consensus 255 q~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~E--e~~~a~V~~~~~~~f~ayLlgi~s~~l~~~Lt~R~M~s~~G 332 (1106)
T KOG0162|consen 255 QETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIE--EGNYAAVSDKSVLEFPAYLLGIDSARLEEKLTSRIMESKWG 332 (1106)
T ss_pred HHHHHHheeccCChHHHHHHHHHHHHHHhccceeEEe--eCCcceeccchHHHhHHHHhcCCHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999996 44567888999999999999999999999999999874
Q ss_pred -CCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccCcceeEEecccCCccCCCCChHHHHHHHhhHH
Q 001592 345 -GKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANER 423 (1048)
Q Consensus 345 -~~e~i~~~l~~~~A~~~rdalak~LY~~LF~wlV~~iN~~l~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~ 423 (1048)
..+.+..+|+++||...||||||+||.+||||||++||.+|...+.+...+||||||||||+|++||||||||||.||+
T Consensus 333 ~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINfVNEK 412 (1106)
T KOG0162|consen 333 GKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINFVNEK 412 (1106)
T ss_pred ccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999996555567899999999999999999999999999999
Q ss_pred HHHHHHHhhhhHhHhhhhhcCCceecccccChHHHHHHHhc-CCCccccccccccCCC----CCChHHHHHHHHHHhCCC
Q 001592 424 LQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEK-KPLGVLSLLDEESNFP----KATDLTFANKLKQHLGSN 498 (1048)
Q Consensus 424 Lq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~-~p~Gil~lLdee~~~p----~~td~~f~~kl~~~~~~~ 498 (1048)
|||.|++-+++.|||+|.+|||.|++|.|.||..++||||. .|.||+++|||-|... .|.|.+|+.+|+..+++|
T Consensus 413 LQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~~~s~ 492 (1106)
T KOG0162|consen 413 LQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLNKLFGSH 492 (1106)
T ss_pred HHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999994 6899999999999753 467999999999999999
Q ss_pred CccccCCCCceEEEeccCcccccccchhhhccCcchHHHHHHHhhccHHHHH-HhhcccCCCCCCCCCCCCCCCCccCcc
Q 001592 499 SCFKGERGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQ-LFASKMLKPSPKPAASSQPGALDTQKQ 577 (1048)
Q Consensus 499 ~~f~~~~~~~F~I~HyaG~V~Y~~~gflekNrD~l~~~~~~ll~~s~~~l~~-lf~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (1048)
|+|..- ...|+|+||||+|+||++||.+||||.|..|++.||++|.++|++ +|.......+ ..+.+
T Consensus 493 phF~~~-s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~ds------------krRP~ 559 (1106)
T KOG0162|consen 493 PHFESR-SNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPENVDADS------------KRRPP 559 (1106)
T ss_pred Cccccc-cCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCchhhcccc------------cCCCC
Confidence 999753 678999999999999999999999999999999999999999765 6764432222 12347
Q ss_pred cHHHHHHHHHHHHHHHHhccCCeeEEeecCCCCCCCCCcchhhhhhhhcccChhHHHHHhhcCCccccchhhHHHhhhcc
Q 001592 578 SVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVL 657 (1048)
Q Consensus 578 tv~~~f~~~L~~L~~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L 657 (1048)
|.+.+.+.|-++|+++|..|+||||||||||..+.|+.||...|++|+.|+|+-|.|||||+||.+|..|+.|+.||.+|
T Consensus 560 Tag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyail 639 (1106)
T KOG0162|consen 560 TAGDKIKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAIL 639 (1106)
T ss_pred CchhhHHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHheec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCC--ChHHHHHHHHHhcCCCccccccCceeeeeecc-chhhhhhhhhhhHH-HHHHHHHhhhccchhhhhhhhh
Q 001592 658 LSEKQLSQ--DPLSISVAVLQQFNVLPEMYQVGYTKLYLRSG-QLAALEDRRKQVLQ-AIIRLQKCFRGYQARSRFRELC 733 (1048)
Q Consensus 658 ~~~~~~~~--d~~~~~~~iL~~~~~~~~~~qvGkTKVFlr~~-~~~~LE~~r~~~~~-aai~IQ~~~Rg~~aRr~y~~~r 733 (1048)
.|..++.+ |.+.+|+.||+..++++++||+|.||||++.. .+..||++|++... -|.+||+.||.|++|+.|.++|
T Consensus 640 sp~t~~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~r 719 (1106)
T KOG0162|consen 640 SPQTWPTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKMR 719 (1106)
T ss_pred CcccccccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998865 88899999999999999999999999999974 59999999999887 4889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Q 001592 734 NGVITLQSFARGENTRRRHASLG 756 (1048)
Q Consensus 734 ~aai~IQs~~Rg~~aRr~~~~~r 756 (1048)
.-+..| .-|...||+|.-.|
T Consensus 720 ee~t~l---l~gKKeRRr~Si~R 739 (1106)
T KOG0162|consen 720 EEATKL---LLGKKERRRYSINR 739 (1106)
T ss_pred HHHHHH---hcchHHHHHHHHHH
Confidence 766653 45677777776554
No 18
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=3.8e-176 Score=1601.29 Aligned_cols=666 Identities=29% Similarity=0.470 Sum_probs=592.5
Q ss_pred ccccccCCCCCchhHHHHHHHHhhcCccccccCCceEecCCCCCCCCCCHHHHHHHhhcCCC--CCchhHHHHHHHHHhh
Q 001592 38 VDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMM 115 (1048)
Q Consensus 38 ~~Dl~~L~~l~e~~il~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~y~~~~~~--~PHiyaiA~~Ay~~m~ 115 (1048)
||||+.|++|||++|||+|+.||.+|.||||+|++|||||||+.+|+|+++++..|+++... |||||+||+.||+.|.
T Consensus 2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~ 81 (767)
T cd01386 2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLALYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRALL 81 (767)
T ss_pred cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCCCCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999987643 8999999999999999
Q ss_pred hCCCceEEEEcCCCCCChhhHHHHHHHHHHHccCCCc--hHHHHHHhhhHHHHHhhcCcCCCCCCCCcccceEEEEECCC
Q 001592 116 GDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSE--GIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAF 193 (1048)
Q Consensus 116 ~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~~--~i~~~il~sn~iLEAFGNAkT~~N~NSSRfGk~i~l~f~~~ 193 (1048)
.+++||||||||||||||||++|+||+||+.++++.+ ...++|+++||||||||||||++||||||||||++|+|+..
T Consensus 82 ~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~~~~~e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F~~~ 161 (767)
T cd01386 82 ETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDGRVSVEKVRALFTILEAFGNVSTALNGNATRFTQILSLDFDQT 161 (767)
T ss_pred HcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCCcccHHHHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEECCC
Confidence 9999999999999999999999999999999987532 23468999999999999999999999999999999999999
Q ss_pred CceeeeEeeeeecCccccccccCCCccchhHHHHhhCCChhhHHhcCCCCCCCCccccCC-CCcccCCcchHHHHHHHHH
Q 001592 194 GKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQS-ECLTIDGVDDAQNFHNLME 272 (1048)
Q Consensus 194 g~i~Ga~i~~yLLEksRVv~~~~gErnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~-~~~~~~~~dD~~~f~~l~~ 272 (1048)
|.|+||+|.+|||||||||+|++||||||||||||+|++++++++|+|.++.+|.++... .+...++++|+++|..++.
T Consensus 162 g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~~~~ 241 (767)
T cd01386 162 GQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSRLQQ 241 (767)
T ss_pred CcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999875443333322 2334567899999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHhcCceeeeeCCCceeeecChHHHHHHHHhcCCCHHHHHHhHhcceeccCCc-----
Q 001592 273 ALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKD----- 347 (1048)
Q Consensus 273 al~~lg~~~~~~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e----- 347 (1048)
||++|||+++++..||+|||||||||||+|.. ..+.+.+.+++.++.||.||||++++|.++|+++++..+++
T Consensus 242 Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~--~~~~~~~~~~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~~~~~~~ 319 (767)
T cd01386 242 AMEVLGISEGEQRAIWRVLAAIYHLGAAGATK--VAGRKQFARPEWAQKAAELLGCPLEELSSATFKHTLRGGINQMTTG 319 (767)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhccCceeee--cCCccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEeecceeeecc
Confidence 99999999999999999999999999999985 23446788999999999999999999999999988766543
Q ss_pred --------eeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccCcceeEEecccCCccCCC------CChH
Q 001592 348 --------SIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKK------NSFE 413 (1048)
Q Consensus 348 --------~i~~~l~~~~A~~~rdalak~LY~~LF~wlV~~iN~~l~~~~~~~~~~IgILDi~GFE~f~~------NsfE 413 (1048)
.+..++++.+|.++||||||+||++||+|||.+||.+|.+.. ....+||||||||||+|+. ||||
T Consensus 320 ~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~-~~~~~IgiLDIfGFE~f~~n~~~~~NsfE 398 (767)
T cd01386 320 PQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSH-HSIASIMLVDTPGFQNPASQGKDRAATFE 398 (767)
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCcEEEEEecccccccccccccCCCCHH
Confidence 234467889999999999999999999999999999999754 3457999999999999984 8999
Q ss_pred HHHHHHhhHHHHHHHHHhhhhHhHhhhhhcCCceecccc-cChHHHHHHHhcCC--------------CccccccccccC
Q 001592 414 QFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEF-EDNEECLNLIEKKP--------------LGVLSLLDEESN 478 (1048)
Q Consensus 414 QlcINyaNE~Lq~~f~~~~f~~eq~~y~~EgI~~~~i~~-~dn~~~l~li~~~p--------------~Gil~lLdee~~ 478 (1048)
|||||||||+||++|+++||+.||++|.+|||+|+.+.+ .||++||+||+++| .|||++|||||+
T Consensus 399 QLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lLDEec~ 478 (767)
T cd01386 399 ELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLDEEAL 478 (767)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhhhHhhc
Confidence 999999999999999999999999999999999986555 69999999999865 499999999999
Q ss_pred CCCCChHHHHHHHHHHhCCCCccccC--------CCCceEEEeccCc--ccccccchhhhccCcc-hHHHHHHHhhccHH
Q 001592 479 FPKATDLTFANKLKQHLGSNSCFKGE--------RGRAFSIRHYAGE--VPYDTNGFLEKNRDPL-QTDIIQLLSSCTCQ 547 (1048)
Q Consensus 479 ~p~~td~~f~~kl~~~~~~~~~f~~~--------~~~~F~I~HyaG~--V~Y~~~gflekNrD~l-~~~~~~ll~~s~~~ 547 (1048)
+|++||++|++||++++++|++|... ....|+|+||||+ |+|+++||++||||.+ +.+++++|++|+++
T Consensus 479 ~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~~~~~~ll~~S~~~ 558 (767)
T cd01386 479 VPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAALNAPQLLQDSKRE 558 (767)
T ss_pred CCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCChHHHHHHHHhCCcH
Confidence 99999999999999999988887541 2458999999995 9999999999999965 68999999999988
Q ss_pred HH-HHhhcccCCC-----C-------CCC----CCC-CC--CC-CCccCcccHHHHHHHHHHHHHHHHhccCCeeEEeec
Q 001592 548 VL-QLFASKMLKP-----S-------PKP----AAS-SQ--PG-ALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIK 606 (1048)
Q Consensus 548 l~-~lf~~~~~~~-----~-------~~~----~~~-~~--~~-~~~~~~~tv~~~f~~~L~~L~~~L~~t~~hfIrCIk 606 (1048)
++ .+|....... + ... ..+ .+ .+ ....+++||+++|+.||+.||++|++|+||||||||
T Consensus 559 ~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~~Lm~~L~~t~phfIRCIK 638 (767)
T cd01386 559 EINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDALIDTLRRSGLHFVHCYL 638 (767)
T ss_pred HHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhccCCeeEEEeC
Confidence 65 6885432100 0 000 000 00 00 112345799999999999999999999999999999
Q ss_pred CCCCCC----------------------CCCcchhhhhhhhcccChhHHHHHhhcCCccccchhhHHHhhhcccccccc-
Q 001592 607 PNSKQL----------------------PGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL- 663 (1048)
Q Consensus 607 PN~~~~----------------------p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~- 663 (1048)
||+.+. |+.||.++|++||||+||||+|||+|.|||+|++|.+|+.||++|++..++
T Consensus 639 PN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~RY~~L~~~~~~~ 718 (767)
T cd01386 639 PQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFVRRFGLLAEGLTKK 718 (767)
T ss_pred ccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHHHHHHHHHhhChhhccc
Confidence 999873 789999999999999999999999999999999999999999999886432
Q ss_pred ------CCChHHHHHHHHHhcCCCccccccCceeeeeeccchhhhhhhh
Q 001592 664 ------SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 706 (1048)
Q Consensus 664 ------~~d~~~~~~~iL~~~~~~~~~~qvGkTKVFlr~~~~~~LE~~r 706 (1048)
..|++..|..||+.+++++++|++|+||||||.+++..||..|
T Consensus 719 ~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 719 VGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 3588999999999999999999999999999999999999876
No 19
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.3e-171 Score=1528.43 Aligned_cols=743 Identities=51% Similarity=0.844 Sum_probs=689.2
Q ss_pred CCCCccCCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEecCCCCCCC-CCCHHHHHHHh-hcCCCCCchhHHH
Q 001592 30 ANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYR-QKVMDSPHVYAIA 107 (1048)
Q Consensus 30 ~np~~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-ly~~~~~~~y~-~~~~~~PHiyaiA 107 (1048)
.||+. .++|||+.|+|||||+||+||+.||..+.||||.|.+|||||||+.+| +|+++.+..|+ ......||+|++|
T Consensus 3 ~~~~~-~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~~~~~~l~ph~favA 81 (862)
T KOG0160|consen 3 PNPPP-MGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQAIQGELSPHLFAVA 81 (862)
T ss_pred CCCCC-CCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhcccccccCcchhhHH
Confidence 45666 899999999999999999999999999999999999999999999999 99999999999 2223369999999
Q ss_pred HHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHccCC--CchHHHHHHhhhHHHHHhhcCcCCCCCCCCcccce
Q 001592 108 DTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG--SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKL 185 (1048)
Q Consensus 108 ~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~--~~~i~~~il~sn~iLEAFGNAkT~~N~NSSRfGk~ 185 (1048)
+.||+.|...+.||+||||||||||||+++|++|+||+.++++ ...||++|+.+|||+||||||||++||||||||||
T Consensus 82 ~~ay~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~ 161 (862)
T KOG0160|consen 82 EEAYRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGSVEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKV 161 (862)
T ss_pred HHHHHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhccchhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhH
Confidence 9999999999999999999999999999999999999999998 67999999999999999999999999999999999
Q ss_pred EEEEECCCCceeeeEeeeeecCccccccccCCCccchhHHHHhhCCChhhHHhcCCCCCCCCccccCCCCcccCCcchHH
Q 001592 186 IEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQ 265 (1048)
Q Consensus 186 i~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~ 265 (1048)
++|+||..|+|+||+|.|||||||||+.++++|||||||||+|+|.+ +++++|+|.++..|.|++|++|..++++||+.
T Consensus 162 iei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~-~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~ 240 (862)
T KOG0160|consen 162 IEITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAP-EELEKLKLGTLRRFSYLNQSACVLISGVSDAE 240 (862)
T ss_pred HHHhhhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcCCc-hhhhccCcCccccceecccccchhhcccccHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceeeeeCCCceeeecChHHHHHHHHhcCCCHHHHHHhHhcceeccC
Q 001592 266 NFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAG 345 (1048)
Q Consensus 266 ~f~~l~~al~~lg~~~~~~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~ 345 (1048)
+|..++.||..+||+.++|+.||++||||||||||+|...++++...+.++ .+..+|.||||+.+.|...|+.|.+.++
T Consensus 241 e~~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~-~~~~~a~Llg~~~~~l~~~L~~r~i~~~ 319 (862)
T KOG0160|consen 241 EFLSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDD-HLWTAAELLGCDEEALEQWLSKRKILTA 319 (862)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccch-HHHHHHHHhCCCHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999997766655554444 8999999999999999999999999999
Q ss_pred CceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccCcceeEEecccCCccCCCCChHHHHHHHhhHHHH
Q 001592 346 KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQ 425 (1048)
Q Consensus 346 ~e~i~~~l~~~~A~~~rdalak~LY~~LF~wlV~~iN~~l~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq 425 (1048)
++.|.++++..+|...||++||.||++||+|+|..||.+|..++.....+||||||||||.|+.|||||||||||||+||
T Consensus 320 ~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkLq 399 (862)
T KOG0160|consen 320 RESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANEKLQ 399 (862)
T ss_pred cceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhHHHHhh
Confidence 99999999999999999999999999999999999999999877667789999999999999999999999999999999
Q ss_pred HHHHHhhhhHhHhhhhhcCCceecccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccCC
Q 001592 426 QHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER 505 (1048)
Q Consensus 426 ~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~~~ 505 (1048)
++||+|+|+.||++|..|||+|..|+|.||++|+++|++ |.|+++||||||++|.++|++|..||.+.+.+|++|..++
T Consensus 400 q~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~~~~~~f~kpr 478 (862)
T KOG0160|consen 400 QQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQKLYQTLKRNKRFTKPR 478 (862)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHHHHHHhccCCccCCCC
Confidence 999999999999999999999999999999999999998 8999999999999999999999999999999999999886
Q ss_pred C--CceEEEeccCcccccccchhhhccCcchHHHHHHHhhccHHHHHHhhcccCCCCCCCCCCCCCCCCccCcccHHHHH
Q 001592 506 G--RAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFASKMLKPSPKPAASSQPGALDTQKQSVGTKF 583 (1048)
Q Consensus 506 ~--~~F~I~HyaG~V~Y~~~gflekNrD~l~~~~~~ll~~s~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f 583 (1048)
. ..|+|.||||+|+|++.|||+||||++++++++++..|++.+...+.......+. ..+++.||+++|
T Consensus 479 ~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~----------~~~~~~tv~s~f 548 (862)
T KOG0160|consen 479 LSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSS----------AKSKRSTVGSQF 548 (862)
T ss_pred CCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchh----------hhhhcccHHHHH
Confidence 4 5899999999999999999999999999999999999999987655443222111 245789999999
Q ss_pred HHHHHHHHHHHhccCCeeEEeecCCCCCCCCCcchhhhhhhhcccChhHHHHHhhcCCccccchhhHHHhhhcccccccc
Q 001592 584 KGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL 663 (1048)
Q Consensus 584 ~~~L~~L~~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~ 663 (1048)
+.+|..||.+|++|.||||||||||..+.|..||..+|++|||||||||++||+..|||.|.+|.||+.||++|+| ...
T Consensus 549 k~~l~~Lm~~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~-~~~ 627 (862)
T KOG0160|consen 549 KLQLISLMETLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP-NDS 627 (862)
T ss_pred HHHHHHHHHHhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-chh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 555
Q ss_pred CCChHHHHHHHHHhcCCCccccccCceeeeeeccchhhhhhhhhhhHHH-HHHHHHhhhccchhhhhhhhhhHHHHHHHH
Q 001592 664 SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQA-IIRLQKCFRGYQARSRFRELCNGVITLQSF 742 (1048)
Q Consensus 664 ~~d~~~~~~~iL~~~~~~~~~~qvGkTKVFlr~~~~~~LE~~r~~~~~a-ai~IQ~~~Rg~~aRr~y~~~r~aai~IQs~ 742 (1048)
..|++..|..||+.++++ .||+|+||||++.|+++.|+..|...+.+ ++.||+.+|+|+.|++|..++.+++.||+.
T Consensus 628 ~~~~~~~~~~il~~~~~~--~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~ 705 (862)
T KOG0160|consen 628 ASDDLSLCKVILEKLGLE--LYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAY 705 (862)
T ss_pred cccchHHHHHHHHHhchh--ceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 667899999999999887 99999999999999999999999988875 567999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHhHhhHHHHHHhhhhhhhhhhhhhHHHHHHhh-hhhhhhccchhHHH
Q 001592 743 ARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK-MHKLKQSNPVNAKV 805 (1048)
Q Consensus 743 ~Rg~~aRr~~~~~r~~aa~~iQ~~~~~~~~aai~IQs~~Rg~laRr~~~-l~~~~~~~~~~~r~ 805 (1048)
+||+++|+ ..++. .|++.||+.||+++.|+.|. ........+..++.
T Consensus 706 ~rG~~~r~--~~~~~--------------~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~ 753 (862)
T KOG0160|consen 706 SRGVLARR--ETERE--------------AAAIGIQKECRSYLNRRRYRALIPASITIQSGVRA 753 (862)
T ss_pred hhHHHHHH--hhHHH--------------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 33332 46666777777777777776 44444444444443
No 20
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=1e-171 Score=1581.65 Aligned_cols=658 Identities=50% Similarity=0.834 Sum_probs=580.1
Q ss_pred ccccccCCCCCchhHHHHHHHHhhcCccccccCCceEecCCCCCCCCCCHHHHHHHhhcCC--CCCchhHHHHHHHHHhh
Q 001592 38 VDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVM--DSPHVYAIADTAYNEMM 115 (1048)
Q Consensus 38 ~~Dl~~L~~l~e~~il~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~y~~~~~--~~PHiyaiA~~Ay~~m~ 115 (1048)
||||+.|++|||++||++|+.||.+|.||||+|++|||||||+++|+|+++.+..|+++.. .|||||++|++||++|+
T Consensus 1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m~ 80 (689)
T PF00063_consen 1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLPLYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQML 80 (689)
T ss_dssp -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--STSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHHH
T ss_pred CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhhhhhhhhhhhhhhhccccccCccchhhhccccccc
Confidence 7999999999999999999999999999999999999999999999999999999988743 48999999999999999
Q ss_pred hCCCceEEEEcCCCCCChhhHHHHHHHHHHHccCCCc-----hHHHHHHhhhHHHHHhhcCcCCCCCCCCcccceEEEEE
Q 001592 116 GDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSE-----GIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHF 190 (1048)
Q Consensus 116 ~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~~-----~i~~~il~sn~iLEAFGNAkT~~N~NSSRfGk~i~l~f 190 (1048)
++++||||||||||||||||++|++|+||+.++.+.. .++++|+++||||||||||||++|+||||||||++|+|
T Consensus 81 ~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~f 160 (689)
T PF00063_consen 81 RTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQF 160 (689)
T ss_dssp HHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEE
T ss_pred ccccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEEe
Confidence 9999999999999999999999999999999987653 79999999999999999999999999999999999999
Q ss_pred CCCCceeeeEeeeeecCccccccccCCCccchhHHHHhhCCChhhHHhcCCCCCCCCccccCCCCcccCCcchHHHHHHH
Q 001592 191 SAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNL 270 (1048)
Q Consensus 191 ~~~g~i~Ga~i~~yLLEksRVv~~~~gErnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l 270 (1048)
+.+|.++||+|.+||||||||+.+++||||||||||||+|++++++++|+|.++.+|+||+++++..+++.||+++|..+
T Consensus 161 ~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~l 240 (689)
T PF00063_consen 161 DDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQEL 240 (689)
T ss_dssp ETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHHH
T ss_pred cccccccccceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHhcCceeeeeCCCceeeecChHHHHHHHHhcCCCHHHHHHhHhcceeccCCceee
Q 001592 271 MEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIA 350 (1048)
Q Consensus 271 ~~al~~lg~~~~~~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~i~ 350 (1048)
+.||+.|||+++++..||+|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++||++++.+++|.++
T Consensus 241 ~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~ 320 (689)
T PF00063_consen 241 KDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENSEELQKAAELLGVDSEELEKALTTRTIKVGGETVT 320 (689)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTSHHHHHHHHHTTS-HHHHHHHHHSEEEESTTSEEE
T ss_pred hhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechHHHHHHhhhhcCCCHHHHHHHHhhccccccccccc
Confidence 99999999999999999999999999999999998877788999999999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccCcceeEEecccCCccCCCCChHHHHHHHhhHHHHHHHHH
Q 001592 351 KKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNR 430 (1048)
Q Consensus 351 ~~l~~~~A~~~rdalak~LY~~LF~wlV~~iN~~l~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~ 430 (1048)
+++++++|.++||+|||+||++||+|||.+||.+|++.......+||||||||||+|..||||||||||||||||++|++
T Consensus 321 ~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~~f~~ 400 (689)
T PF00063_consen 321 KPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQFFNQ 400 (689)
T ss_dssp EE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccceeeeccccccceeee
Confidence 99999999999999999999999999999999999987645678999999999999999999999999999999999999
Q ss_pred hhhhHhHhhhhhcCCceecccc-cChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHh-CCCCccccC----
Q 001592 431 HLFKLEQEEYELDGVDWTRVEF-EDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHL-GSNSCFKGE---- 504 (1048)
Q Consensus 431 ~~f~~eq~~y~~EgI~~~~i~~-~dn~~~l~li~~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~-~~~~~f~~~---- 504 (1048)
++|+.||++|.+|||+|..++| .||++|||||+++|.|||++|||||.+|++||++|+++|.+.+ ++|+.|.++
T Consensus 401 ~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~~~~~~~~~~~~~~~ 480 (689)
T PF00063_consen 401 HIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRHSGKHPSFVKPRFSR 480 (689)
T ss_dssp HHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHHTTTSTTEECTSSST
T ss_pred ecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhcccCCCccccccccc
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999 888988654
Q ss_pred --CCCceEEEeccCcccccccchhhhccCcchHHHHHHHhhccHHHH-HHhhcccCCCC----------CCCCCCCCCCC
Q 001592 505 --RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPS----------PKPAASSQPGA 571 (1048)
Q Consensus 505 --~~~~F~I~HyaG~V~Y~~~gflekNrD~l~~~~~~ll~~s~~~l~-~lf~~~~~~~~----------~~~~~~~~~~~ 571 (1048)
....|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|........ .....+....+
T Consensus 481 ~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (689)
T PF00063_consen 481 STSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEATATSSSSSSLSRRSSSSSTQSRSSG 560 (689)
T ss_dssp SSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH---S-S-S-BTTTTCCCTTSSCCC
T ss_pred ccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccccccccccccccccccccccccccc
Confidence 367999999999999999999999999999999999999999876 68865542000 00000011122
Q ss_pred CccCcccHHHHHHHHHHHHHHHHhccCCeeEEeecCCCCCCCCCcchhhhhhhhcccChhHHHHHhhcCCccccchhhHH
Q 001592 572 LDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFA 651 (1048)
Q Consensus 572 ~~~~~~tv~~~f~~~L~~L~~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~~F~ 651 (1048)
...+..||+++|+.||+.||+.|++|+||||||||||+.+.|+.||..+|.+||+|+||+|+++|++.|||+|++|.+|+
T Consensus 561 ~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~~~eF~ 640 (689)
T PF00063_consen 561 SKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLTFDEFL 640 (689)
T ss_dssp GGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEEHHHHH
T ss_pred cccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecchhhhh
Confidence 23456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhcccccccc-----CCChHHHHHHHHHhcCCCccccccCceeeeee
Q 001592 652 GRYGVLLSEKQL-----SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLR 695 (1048)
Q Consensus 652 ~RY~~L~~~~~~-----~~d~~~~~~~iL~~~~~~~~~~qvGkTKVFlr 695 (1048)
+||++|++.... ..++++.|+.||+.+++++++|++|+||||||
T Consensus 641 ~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 641 RRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp HHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 999999998764 36899999999999999999999999999996
No 21
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.2e-169 Score=1426.67 Aligned_cols=744 Identities=39% Similarity=0.636 Sum_probs=669.5
Q ss_pred eeeecCCeEEEEec--CCcEEEEeCCCCcCCCCCccCCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEecCCC
Q 001592 2 IQSTSGDEAFVLLS--NGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPF 79 (1048)
Q Consensus 2 i~~~~~~~~~v~~~--~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iYT~~G~iLiavNP~ 79 (1048)
|+.++....+++.- .|.+++--.+|++++..+...+|||-|.|-+|||+++|+|++-||.+|.||||+.+||||||||
T Consensus 21 I~di~~~~ftl~~~d~k~~t~~~~~edv~a~eeD~~k~veDNC~Lm~LNEATlL~Nik~RY~k~kIYtYVANILIavNPY 100 (1259)
T KOG0163|consen 21 ITDIGAKGFTLTPLDRKGPTVTRHFEDVHACEEDSPKDVEDNCELMHLNEATLLNNIKLRYYKDKIYTYVANILIAVNPY 100 (1259)
T ss_pred eeeecCCceEEeecccCCcceeehhhhccccccccccccccccceeeccHHHHhhhhhhhhccCchhhhhhhhheeccch
Confidence 56677777888653 6788888889999998888889999999999999999999999999999999999999999999
Q ss_pred CCCC-CCCHHHHHHHhhcCCC--CCchhHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHccCCCchHHH
Q 001592 80 KAVP-IYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEY 156 (1048)
Q Consensus 80 k~l~-ly~~~~~~~y~~~~~~--~PHiyaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~~~i~~ 156 (1048)
..+| +|+++.+..|++++.. ||||||||+.|||.|..-+.+||||+||||||||||++|.+|+||+.--++.+.|+.
T Consensus 101 ~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIVSGESGAGKTEstK~vLrYLces~gsag~Iq~ 180 (1259)
T KOG0163|consen 101 QEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIVSGESGAGKTESTKAVLRYLCESWGSAGPIQT 180 (1259)
T ss_pred hhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEEecCCCCCcchhHHHHHHHHHhccCCCCcHHH
Confidence 9999 9999999999999876 799999999999999999999999999999999999999999999987666678999
Q ss_pred HHHhhhHHHHHhhcCcCCCCCCCCcccceEEEEECCCCceeeeEeeeeecCccccccccCCCccchhHHHHhhCCChhhH
Q 001592 157 EILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLK 236 (1048)
Q Consensus 157 ~il~sn~iLEAFGNAkT~~N~NSSRfGk~i~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErnfHIFYqLl~G~~~~~~ 236 (1048)
+|+.+||||||||||||+||+||||||||++|||+..|.++|+-|++||||||||+.|+.+||||||||||+||++++++
T Consensus 181 rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYLLEkSRiC~Qaa~ERNYHiFY~LiAGas~dl~ 260 (1259)
T KOG0163|consen 181 RILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYLLEKSRICRQAAEERNYHIFYQLIAGASPDLR 260 (1259)
T ss_pred HHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceechhhhHHHHHHhHHHHhhhcccchhHHHHHHcCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCccccCCCCc---------------------------ccCCcchHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 001592 237 ERLNLKVANDYNYLNQSECL---------------------------TIDGVDDAQNFHNLMEALDIVLIRKEDREQTFA 289 (1048)
Q Consensus 237 ~~l~L~~~~~y~yL~~~~~~---------------------------~~~~~dD~~~f~~l~~al~~lg~~~~~~~~i~~ 289 (1048)
++|+|..|++|+||+.+ |. .-|-+||..+|+.+..||+.+|++++|...||+
T Consensus 261 ~kL~L~~pd~f~YL~rG-~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~iidD~~dF~rl~~Al~~~Glsd~Ekl~i~s 339 (1259)
T KOG0163|consen 261 KKLSLGKPDDFRYLKRG-CTQYFANAKTEQKIPGNRKSKNHQQKGSLKDPIIDDYQDFHRLEKALKLLGLSDTEKLFIWS 339 (1259)
T ss_pred HHhccCCchhhhHHhcc-hhhhccCcchhhcCcccccCccccccCcccCcccccHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 99999999999999854 31 123468999999999999999999999999999
Q ss_pred HHHHHHHhcCceeeeeCC--Cceeeec--ChHHHHHHHHhcCCCHHHHHHhHhcceecc-----CCceeeecCCHHHHHH
Q 001592 290 MLAAVLWLGNISFQVIDN--ENHVEVI--ADEAVTTAAMLMGCSSDELMLALSTHKIQA-----GKDSIAKKLTLQQAID 360 (1048)
Q Consensus 290 ilaaILhLGni~F~~~~~--~~~~~~~--~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~-----~~e~i~~~l~~~~A~~ 360 (1048)
++|||||||||+|++..+ .+.|.+. +...|..+|+|||+++++|...|+.|.|.+ .|..|.+||.+.+|..
T Consensus 340 ~vA~vLHLGNieFEE~~ddsrGGC~v~n~seqsL~~~a~LLGld~~elr~~L~aRvMqtt~GG~kGTvIrVPLK~~eA~n 419 (1259)
T KOG0163|consen 340 TVAAVLHLGNIEFEEIPDDSRGGCQVSNGSEQSLTIAAELLGLDQTELRTGLCARVMQTTKGGFKGTVIRVPLKIHEASN 419 (1259)
T ss_pred HHHHHHHccccchhcccCcCCCceecccCchhhHHHHHHHhCCCHHHHHHHHHHHHHHhccCCccceEEEeeccHHhhcc
Confidence 999999999999997543 3456654 456899999999999999999999999863 3567899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCCccCcceeEEecccCCccCCCCChHHHHHHHhhHHHHHHHHHhhhhHhHhhh
Q 001592 361 SRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEY 440 (1048)
Q Consensus 361 ~rdalak~LY~~LF~wlV~~iN~~l~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~f~~eq~~y 440 (1048)
+||||||++|++||||||.+||+++.... +..+||||||.|||.|.+||||||||||+||+||+|||+.|++.||+.|
T Consensus 420 ~RDALaKaiYSkLFD~lV~~iNqsiPFe~--St~fiGVLDiAGFEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElY 497 (1259)
T KOG0163|consen 420 ARDALAKAIYSKLFDWLVGRINQSIPFEK--STFFIGVLDIAGFEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELY 497 (1259)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccccccc--ccceeEEEeeccceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999997643 4579999999999999999999999999999999999999999999999
Q ss_pred hhcCCceecccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccCC------------CCc
Q 001592 441 ELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER------------GRA 508 (1048)
Q Consensus 441 ~~EgI~~~~i~~~dn~~~l~li~~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~~~------------~~~ 508 (1048)
+.||+....|.|.||++|++|||.|..|||.|||||..+|+.++..|....++.+++|-....++ ...
T Consensus 498 ekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~HfRL~~PRkSklksHR~lRDdEG 577 (1259)
T KOG0163|consen 498 EKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKNHFRLDLPRKSKLKSHRELRDDEG 577 (1259)
T ss_pred HhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhcceeecCCchhhhhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999998877664433221 458
Q ss_pred eEEEeccCcccccccchhhhccCcchHHHHHHHhhccHHHH-HHhhcccCCCCCCCCCCCCCCCCccCcccHHHHHHHHH
Q 001592 509 FSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQL 587 (1048)
Q Consensus 509 F~I~HyaG~V~Y~~~gflekNrD~l~~~~~~ll~~s~~~l~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L 587 (1048)
|.|+||||.|.|.+..|+|||.|.|+..+-.|+..|+++++ .||.+..... .++ .+ ...+.-||+++|+.||
T Consensus 578 ~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~sLF~S~s~t~-a~~-----~~-gkL~~iSVGaKFKtQL 650 (1259)
T KOG0163|consen 578 FLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLVSLFPSGSSTS-AKQ-----TR-GKLKFISVGAKFKTQL 650 (1259)
T ss_pred eeeeecccceeechHHHHHhccHHHHHHHHHHHHhccchHHHHHccCCCCCc-ccc-----cc-ceeeEEehhHHHHHHH
Confidence 99999999999999999999999999999999999999965 6887542211 111 11 1345679999999999
Q ss_pred HHHHHHHhccCCeeEEeecCCCCCCCCCcchhhhhhhhcccChhHHHHHhhcCCccccchhhHHHhhhccccccccCCCh
Q 001592 588 FKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDP 667 (1048)
Q Consensus 588 ~~L~~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~~d~ 667 (1048)
..||+.|++|..|||||||||..+.|..||...++.||.|+|++.++++++.|||.|..|.+.+.-|.-.+|+....-||
T Consensus 651 ~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~GyPSR~~F~dLYamYkk~lPpkLarLdp 730 (1259)
T KOG0163|consen 651 SELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQHGYPSRTSFADLYAMYKKVLPPKLARLDP 730 (1259)
T ss_pred HHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHhhCCHhhhcCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred HHHHHHHHHhcCCCccccccCceeeeeeccchhhhhhhhhhhHHHHHHHHHhhhccchhhhhhhhh--------------
Q 001592 668 LSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQAIIRLQKCFRGYQARSRFRELC-------------- 733 (1048)
Q Consensus 668 ~~~~~~iL~~~~~~~~~~qvGkTKVFlr~~~~~~LE~~r~~~~~aai~IQ~~~Rg~~aRr~y~~~r-------------- 733 (1048)
+-.|.++.+.+|++..+|++|.||||||.|-.+.....+.........|-+-+--|+.|.+|++..
T Consensus 731 RlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~lv~kVn~WLv~sRWkk~q~~a~sVIKLkNkI~ 810 (1259)
T KOG0163|consen 731 RLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLELVAKVNKWLVRSRWKKSQYGALSVIKLKNKII 810 (1259)
T ss_pred HHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhheeehhhHHH
Confidence 999999999999999999999999999999999888877665554443333445556665555432
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHhh
Q 001592 734 ---NGVITLQSFARGENTRRRHASL 755 (1048)
Q Consensus 734 ---~aai~IQs~~Rg~~aRr~~~~~ 755 (1048)
.+++++|+++|||++|+++...
T Consensus 811 yRae~v~k~Q~~~Rg~L~rkr~~~r 835 (1259)
T KOG0163|consen 811 YRAECVLKAQRIARGYLARKRHRPR 835 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchH
Confidence 3567788888888888877643
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=8e-114 Score=1054.80 Aligned_cols=746 Identities=37% Similarity=0.539 Sum_probs=632.0
Q ss_pred CCCccCCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEecCCCCCCC-CCCHHHHHHHhhcCC--CCCchhHHH
Q 001592 31 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYRQKVM--DSPHVYAIA 107 (1048)
Q Consensus 31 np~~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-ly~~~~~~~y~~~~~--~~PHiyaiA 107 (1048)
.+....+++||+.|.+++|+.++.+|..||..+.||||+|++|++||||+.+| +|.++++..|.++.. .+||||++|
T Consensus 56 ~~~~~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~a 135 (1062)
T KOG4229|consen 56 HRPQVEDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAIA 135 (1062)
T ss_pred cccccccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhhhh
Confidence 44566889999999999999999999999999999999999999999999999 999999999985543 379999999
Q ss_pred HHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHcc-CCCchHHHHHHhhhHHHHHhhcCcCCCCCCCCcccceE
Q 001592 108 DTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG-GGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLI 186 (1048)
Q Consensus 108 ~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~-~~~~~i~~~il~sn~iLEAFGNAkT~~N~NSSRfGk~i 186 (1048)
+.||+.|++...||||+|||||||||||+|+++++||+.++ +....++..|+.+||+|||||||+|.+|||||||||||
T Consensus 136 d~~y~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~i 215 (1062)
T KOG4229|consen 136 DLAYQDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQGNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKYI 215 (1062)
T ss_pred hhHHHhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhcCCCCchhhhhhcchHHHHHhcccCCcccCchhhhhheE
Confidence 99999999999999999999999999999999999999999 66678999999999999999999999999999999999
Q ss_pred EEEECCCCceeeeEeeeeecCccccccccCCCccchhHHHHhhCCChhhHHhcCCCCCCCCccccCCCCccc-CCcchHH
Q 001592 187 EIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTI-DGVDDAQ 265 (1048)
Q Consensus 187 ~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~-~~~dD~~ 265 (1048)
++.|...|.|.||+|..||||||||+.|+.+||||||||++++|++.+++..+.|..+.+|.||+++.+..+ ++.++..
T Consensus 216 ~~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~~ 295 (1062)
T KOG4229|consen 216 KVNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDDVA 295 (1062)
T ss_pred EeccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceeeeeC--CCceeeecChHHHHHHHHhcCCCHHHHHHhHhcceec
Q 001592 266 NFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVID--NENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQ 343 (1048)
Q Consensus 266 ~f~~l~~al~~lg~~~~~~~~i~~ilaaILhLGni~F~~~~--~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~ 343 (1048)
+|..+..||.++||+.+++..||++++||||+|||+|.... ..+.+.+.+...++.+|.||+++++.|.+++|.++..
T Consensus 296 ~~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~~~~v~~vA~lL~~~~~~l~~alt~~~~~ 375 (1062)
T KOG4229|consen 296 QFIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVENEEAVERVACLLLIKEKLLQEALTARVNV 375 (1062)
T ss_pred hHHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhcccchHHHHHHHHhhcCHHHhhhhhccccee
Confidence 99999999999999999999999999999999999997533 3455778899999999999999999999999999999
Q ss_pred cCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcc-CcceeEEecccCCccCCCCChHHHHHHHhhH
Q 001592 344 AGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQC-TGRSINILDIYGFESFKKNSFEQFCINYANE 422 (1048)
Q Consensus 344 ~~~e~i~~~l~~~~A~~~rdalak~LY~~LF~wlV~~iN~~l~~~~~~-~~~~IgILDi~GFE~f~~NsfEQlcINyaNE 422 (1048)
..||.+..++++++|.+.||++||.||++||.|||.+||..+.+.... ...+||||||||||+|+.|||||||||||||
T Consensus 376 ~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~Ane 455 (1062)
T KOG4229|consen 376 TRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINLANE 455 (1062)
T ss_pred eehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999864321 3579999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHhHhhhhhcCCceecccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccc
Q 001592 423 RLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFK 502 (1048)
Q Consensus 423 ~Lq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~ 502 (1048)
+||+||++|||..||+||..|+|+|.+|.|.||..|+++|..+|.|||.+|||||.+|++||.+++.|+...++.+..|.
T Consensus 456 ~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~~q~~~~~~y~ 535 (1062)
T KOG4229|consen 456 QLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLNMQHGSNNLYV 535 (1062)
T ss_pred HHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHhhhhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998766554
Q ss_pred cC---CCCceEEEeccCcccccccchhhhccCcchHHHHHHHhhccHHHHHHhhc-ccCCCCC----------CCC---C
Q 001592 503 GE---RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFAS-KMLKPSP----------KPA---A 565 (1048)
Q Consensus 503 ~~---~~~~F~I~HyaG~V~Y~~~gflekNrD~l~~~~~~ll~~s~~~l~~lf~~-~~~~~~~----------~~~---~ 565 (1048)
.+ ....|+|.||||.|.|++.||++||+|.++.|++.++.+|++.+.+.+.+ .....+. .+. +
T Consensus 536 ~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~~~~~ 615 (1062)
T KOG4229|consen 536 FPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRWFELRALKVAMPVPLEV 615 (1062)
T ss_pred cccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcchhhhhhcccccccchh
Confidence 32 35699999999999999999999999999999999999998887654322 2111100 000 0
Q ss_pred C-----CCCCCCcc----------CcccHHHHHHHHHHHHHHHHhccCCeeEEeecCCCCCCCCCcchh-hhhhhhcccC
Q 001592 566 S-----SQPGALDT----------QKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEED-LVLQQFRCCG 629 (1048)
Q Consensus 566 ~-----~~~~~~~~----------~~~tv~~~f~~~L~~L~~~L~~t~~hfIrCIkPN~~~~p~~fd~~-~V~~QLr~~g 629 (1048)
+ .+.+..+. ...+++.+++-++.+....|....+||.|||++|+.-.+..++.. .+..++...|
T Consensus 616 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~ 695 (1062)
T KOG4229|consen 616 TLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRG 695 (1062)
T ss_pred hhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcc
Confidence 0 01111111 234566677778999999999999999999999999988888876 8999999999
Q ss_pred hhHHHHHhhcCCccccchhhHHHhhhccccccccCCCh-HHHHHHHHHhcCCCccccccCceeeeeeccchhhhhhhhhh
Q 001592 630 VLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDP-LSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQ 708 (1048)
Q Consensus 630 vle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~~d~-~~~~~~iL~~~~~~~~~~qvGkTKVFlr~~~~~~LE~~r~~ 708 (1048)
..++....+.|+..+..|.+++++++..........+. ...|..++...+ -+++..+.+.++.+...-..+--.+..
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~e 773 (1062)
T KOG4229|consen 696 STATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNA--INMKSERLTTLLPRYIPDPCLDPVRRE 773 (1062)
T ss_pred cccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhcc--ccchhhhhcccccccCccccCCccccc
Confidence 99999999999999999999998877554332111111 123444454433 368899999998776543333333333
Q ss_pred hHHHHHHHHHhhhccchhhhhhhhh----hHHHHHHHHHHHHHHHHHHHhhhhhhHhHhhHHHHHHhhhhhhhhhhhhhH
Q 001592 709 VLQAIIRLQKCFRGYQARSRFRELC----NGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGW 784 (1048)
Q Consensus 709 ~~~aai~IQ~~~Rg~~aRr~y~~~r----~aai~IQs~~Rg~~aRr~~~~~r~~aa~~iQ~~~~~~~~aai~IQs~~Rg~ 784 (1048)
.....+..|..++.|..+..+...+ ...+.+|.-++....+..++..-.+ .-..++.+|..|=|.
T Consensus 774 ~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~-----------~~~~~v~~~~~~t~~ 842 (1062)
T KOG4229|consen 774 RVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLR-----------FPDNVVLRQVSYTGE 842 (1062)
T ss_pred hhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccC-----------CChHHHHHhhhchhh
Confidence 3445566788887887777755543 3566777777666555553332211 123455666666664
Q ss_pred HHHHH
Q 001592 785 LVRKQ 789 (1048)
Q Consensus 785 laRr~ 789 (1048)
..+.+
T Consensus 843 ~~~~~ 847 (1062)
T KOG4229|consen 843 LDQEQ 847 (1062)
T ss_pred hccch
Confidence 43333
No 23
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.74 E-value=1.2e-08 Score=107.03 Aligned_cols=89 Identities=25% Similarity=0.268 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHccCCCchHHHHHHhhhHHHHHhh-cCcCCCCCCCCc
Q 001592 103 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFG-NAKTSRNDNSSR 181 (1048)
Q Consensus 103 iyaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~~~i~~~il~sn~iLEAFG-NAkT~~N~NSSR 181 (1048)
||..+..++..|+ ++.|+||+..|+||||||+|+.--. .-.|--....+.+++.....+++. +|.|.+|++|||
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G~~----~~~Giip~~~~~~~~ll~~g~~~R~~~~t~~N~~SSR 82 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEGKR----EGAGIIPRTVTDVIDLMDKGNANRTTAATAMNEHSSR 82 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCCCC----CCCCcchHHHHHHHHHHhhccccccccccCCCCccCc
Confidence 8888889999998 5799999999999999998854211 000000122333777888889999 999999999999
Q ss_pred ccceEEEEECCCCce
Q 001592 182 FGKLIEIHFSAFGKI 196 (1048)
Q Consensus 182 fGk~i~l~f~~~g~i 196 (1048)
+..++.|++......
T Consensus 83 sH~i~~i~v~~~~~~ 97 (186)
T cd01363 83 SHSVFRIHFGGKNAL 97 (186)
T ss_pred ccEEEEEEEEEeecC
Confidence 999999999754443
No 24
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.95 E-value=5.9e-05 Score=93.56 Aligned_cols=86 Identities=26% Similarity=0.264 Sum_probs=70.1
Q ss_pred cCceeeeeeccchhhhhhhhhh-hHHHHHHHHHhhhccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHhhH
Q 001592 687 VGYTKLYLRSGQLAALEDRRKQ-VLQAIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRRHASLGKSCSAVVPE 765 (1048)
Q Consensus 687 vGkTKVFlr~~~~~~LE~~r~~-~~~aai~IQ~~~Rg~~aRr~y~~~r~aai~IQs~~Rg~~aRr~~~~~r~~aa~~iQ~ 765 (1048)
++..+++++......+-+..-. ...+++.||+.+||+++|+... ...+++.||+.+|++..|++|..++
T Consensus 672 l~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~~-~~~aai~~q~~~r~~~~r~~y~~~~--------- 741 (862)
T KOG0160|consen 672 LSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRETE-REAAAIGIQKECRSYLNRRRYRALI--------- 741 (862)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhH-HHHHHHHhHHHHHHHHHHHHHHHHH---------
Confidence 4455666777767766665533 3347789999999999999444 6788999999999999999999876
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHH
Q 001592 766 IRDEQLREIICLQSAIRGWLVRK 788 (1048)
Q Consensus 766 ~~~~~~~aai~IQs~~Rg~laRr 788 (1048)
.+++.||+.+|++++|+
T Consensus 742 ------~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 742 ------PASITIQSGVRAMLARN 758 (862)
T ss_pred ------HHHHHHHHHHHHHHhcc
Confidence 57999999999999998
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.79 E-value=0.00092 Score=89.58 Aligned_cols=380 Identities=14% Similarity=0.078 Sum_probs=179.3
Q ss_pred eeeeecCccccccccCCCccchhHHHHhhCCChhh----HHhcCCCCCCCCccccCCCCcccCCcchHHHHHHHHHHHhh
Q 001592 201 IQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFL----KERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDI 276 (1048)
Q Consensus 201 i~~yLLEksRVv~~~~gErnfHIFYqLl~G~~~~~----~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~al~~ 276 (1048)
...+....+..+.++++..+||-|+.+.-+..+.. .+.|.| ..++.+.|. ++.-+..-|-.+..+
T Consensus 217 npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLL---EKsRv~~Q~-----~~Er~yhiFyqlls~--- 285 (1930)
T KOG0161|consen 217 NPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLL---EKSRVIRQA-----PGERNYHIFYQLLSG--- 285 (1930)
T ss_pred CchHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHH---HHhHhhccC-----cchhHHHHHHHHHhC---
Confidence 33455557889999999999999999988765432 222222 122222332 222222333333322
Q ss_pred cCCCHHHHHHHH--HHHHHHHHhcCceeeeeCCCceeeecCh---HHHHHHHHhcCCCHHHHHHhHhc--ceeccCCcee
Q 001592 277 VLIRKEDREQTF--AMLAAVLWLGNISFQVIDNENHVEVIAD---EAVTTAAMLMGCSSDELMLALST--HKIQAGKDSI 349 (1048)
Q Consensus 277 lg~~~~~~~~i~--~ilaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~Lt~--~~~~~~~e~i 349 (1048)
. .+......+ .-+.--.+++|... ..+ -+.+. ..+..+-..||+++++...++.- -.+..|+-.+
T Consensus 286 ~--~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~-----g~dd~eef~~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f 357 (1930)
T KOG0161|consen 286 A--DPELKEELLLSDNVKDYKFLSNGES-TIP-----GVDDAEEFQETDEAMDILGFSEEEKISIFRIVSAILHLGNIKF 357 (1930)
T ss_pred C--CHHHHHHHhhcccchhhhhhccccC-CCC-----CcchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhh
Confidence 1 222211110 00111112222222 111 11222 24667788999999988877532 2233443332
Q ss_pred eecCCHHHHHHHHHHHHHHHHHHHHHH-HHHhhccccccCCccCcceeEEecccCCccCCCCChHHHHHHHhhHHHHHHH
Q 001592 350 AKKLTLQQAIDSRDALAKFIYGSLFDW-IVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHF 428 (1048)
Q Consensus 350 ~~~l~~~~A~~~rdalak~LY~~LF~w-lV~~iN~~l~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f 428 (1048)
...-..+||.-.....|-.+-.. +.. .-..+++.+.|. ....+-.++.|+.. +| .+++=+-|...-
T Consensus 358 ~~~~~~~qa~~~~~~~a~ka~~l-lg~~~~~~~~al~~pr----iKvg~e~v~k~q~~------~q--~~~~v~alAk~l 424 (1930)
T KOG0161|consen 358 KQEPREEQAEFDNTEVADKACHL-LGINVEEFLKALLRPR----IKVGREWVSKAQNV------EQ--VLFAVEALAKAL 424 (1930)
T ss_pred hccccccccCCCCchHHHHHHHH-cCCCHHHHHHHhcccc----eeccchhhhhcchH------HH--HHHHHHHHHHHH
Confidence 22213344432222222211111 111 111222222221 12333455555533 34 778888888888
Q ss_pred HHhhhhHhHhhhhhcCCceecccccChHHHHHHHhcCCCccccccccccCCCCCChHHH-----HHHHHHHhCCCCcccc
Q 001592 429 NRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTF-----ANKLKQHLGSNSCFKG 503 (1048)
Q Consensus 429 ~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~p~Gil~lLdee~~~p~~td~~f-----~~kl~~~~~~~~~f~~ 503 (1048)
+..+|.+ +-.+...+++|. .+-..+|.+++-. .+-|.-+ .|=+-+ .+||++.++.|- |..
T Consensus 425 YerlF~w-lV~riN~sld~~----~~~~~fIgvLDia-GFEIfe~--------nSFEQLciNytnEkLQqfFnh~m-Fvl 489 (1930)
T KOG0161|consen 425 YERLFGW-LVKRINKSLDSK----QQRDYFIGVLDIA-GFEIFEF--------NSFEQLCINYTNEKLQQFFNHHM-FVL 489 (1930)
T ss_pred HHHHHHH-HHHHHHHHhhhc----cccCCcceeeeec-cccccCc--------CCHHHHHHHHHHHHHHhhhcchh-hhh
Confidence 8888854 556777888886 3333444444432 1111111 111111 256666665443 332
Q ss_pred CC------CCceEEEeccCcccccccchhhhccCcchHHHHHHHhh-------ccHHHH-HHhhcccCCCCCCCCCCCCC
Q 001592 504 ER------GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSS-------CTCQVL-QLFASKMLKPSPKPAASSQP 569 (1048)
Q Consensus 504 ~~------~~~F~I~HyaG~V~Y~~~gflekNrD~l~~~~~~ll~~-------s~~~l~-~lf~~~~~~~~~~~~~~~~~ 569 (1048)
.. +-++..-|| |-=.=.+.+-|+|=. .++.+|.. ++..++ .++....+.. |
T Consensus 490 EqeeY~~EgIew~fidf-G~Dlq~~idLIEkp~-----Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk~---~------ 554 (1930)
T KOG0161|consen 490 EQEEYQREGIEWDFIDF-GLDLQPTIDLIEKPM-----GILSLLDEECVVPKATDKTFLEKLCDQHLGKH---P------ 554 (1930)
T ss_pred hHHHHHHhCCceeeecc-ccchhhhHHHHhchh-----hHHHHHHHHHhcCCCccchHHHHHHHHhhccC---c------
Confidence 21 346777777 211111222233211 33333321 111122 2222211110 0
Q ss_pred CCCccCcccHHHHHHHHHHHHHHHHhccCCeeEEeecCCCCCCCCCcchhhhhhhhcccChhHHHHHhhcCCccccchhh
Q 001592 570 GALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQE 649 (1048)
Q Consensus 570 ~~~~~~~~tv~~~f~~~L~~L~~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~~ 649 (1048)
...++. ..+....+....-+.+ |+|.-++-..++..-....|..+|+|++ .+.|...-.| +..+..
T Consensus 555 ---~f~~~k-----~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll~~s~-~~~v~~l~~~---~~~~~~ 620 (1930)
T KOG0161|consen 555 ---KFQKPK-----GKKAEAHFALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLLKQST-NKLVSSLFQD---YAGAAA 620 (1930)
T ss_pred ---cccCcc-----cccchhhhheeeecce--eccCccchhhcCCCCchHHHHHHHHhcc-cHHHHHHhhh---hhccch
Confidence 001111 1122233333333334 9999999988888888899999999999 8888777665 777777
Q ss_pred HHHhhhc
Q 001592 650 FAGRYGV 656 (1048)
Q Consensus 650 F~~RY~~ 656 (1048)
+..++..
T Consensus 621 ~~~~~~~ 627 (1930)
T KOG0161|consen 621 AAKGGEA 627 (1930)
T ss_pred hhhhhhh
Confidence 7777765
No 26
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=97.62 E-value=1.6e-05 Score=100.87 Aligned_cols=191 Identities=19% Similarity=0.161 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHHhccCCeeEEeecCCCCCCCCCcchhhhhhhhcccChhHHHHHhhcCCccccchhhHHHhhhcccccc
Q 001592 582 KFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEK 661 (1048)
Q Consensus 582 ~f~~~L~~L~~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~ 661 (1048)
++.....+++..+....|.|++||+-|..+....|+...|..|+++.|+++..+++..+|+..+++.+|..-+.+..+..
T Consensus 794 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~ 873 (1062)
T KOG4229|consen 794 SPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIGLPET 873 (1062)
T ss_pred ccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccccCCcc
Confidence 55666778999999999999999999988888899999999999999999999999999999999999999999988732
Q ss_pred ccCCChHHHHHHHHHhcCCCccccccCceeeeeeccchhhhhhhhh-hhHH-HHHHHHHhhhccchhhhhhhhhhHHHHH
Q 001592 662 QLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRK-QVLQ-AIIRLQKCFRGYQARSRFRELCNGVITL 739 (1048)
Q Consensus 662 ~~~~d~~~~~~~iL~~~~~~~~~~qvGkTKVFlr~~~~~~LE~~r~-~~~~-aai~IQ~~~Rg~~aRr~y~~~r~aai~I 739 (1048)
.. ..............+.++.|.+++|+...-...++..-. .... .+...|++++....|+.+.++..+.+++
T Consensus 874 ~~-----~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~ 948 (1062)
T KOG4229|consen 874 VD-----TVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLI 948 (1062)
T ss_pred ch-----hhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhcchhHHH
Confidence 11 111122233344678899999999998776555554432 2222 2667899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhHhhHHHHHHhhhhhhhhhhhhhHHHHHHhh
Q 001592 740 QSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK 791 (1048)
Q Consensus 740 Qs~~Rg~~aRr~~~~~r~~aa~~iQ~~~~~~~~aai~IQs~~Rg~laRr~~~ 791 (1048)
| |+++..|+.-...-.. -.+++-+|.+|+.+..+..+.
T Consensus 949 ~--~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 986 (1062)
T KOG4229|consen 949 Q--RLELLGRRTCPVAGAP------------AVAAASLQNAWPVYRELSGRL 986 (1062)
T ss_pred H--HHHHhcccCCcchhhh------------hhhhhhccccchhhhhhhhhH
Confidence 9 8887777643321110 134555566666555444444
No 27
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.91 E-value=0.00072 Score=45.00 Aligned_cols=19 Identities=42% Similarity=0.656 Sum_probs=10.2
Q ss_pred hhhhhhhhhhhhHHHHHHh
Q 001592 772 REIICLQSAIRGWLVRKQL 790 (1048)
Q Consensus 772 ~aai~IQs~~Rg~laRr~~ 790 (1048)
+|+++||+.||||++|+.|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3455555555555555554
No 28
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.84 E-value=0.00089 Score=83.52 Aligned_cols=45 Identities=31% Similarity=0.524 Sum_probs=41.4
Q ss_pred HHHHHHHHhhhccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 001592 711 QAIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRRHASL 755 (1048)
Q Consensus 711 ~aai~IQ~~~Rg~~aRr~y~~~r~aai~IQs~~Rg~~aRr~~~~~ 755 (1048)
.++..||.++|+|+.|+.|..++..++.||+.+||+..|+.|..+
T Consensus 811 ~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki 855 (975)
T KOG0520|consen 811 AAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKI 855 (975)
T ss_pred hHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhhee
Confidence 477899999999999999999999999999999999999998754
No 29
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.77 E-value=0.012 Score=75.48 Aligned_cols=139 Identities=17% Similarity=0.216 Sum_probs=97.7
Q ss_pred HHHHHHHHhhhccch----hhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHhhHHHHHHhhhhhhhhhhhhhHHH
Q 001592 711 QAIIRLQKCFRGYQA----RSRFRELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLV 786 (1048)
Q Consensus 711 ~aai~IQ~~~Rg~~a----Rr~y~~~r~aai~IQs~~Rg~~aRr~~~~~r~~aa~~iQ~~~~~~~~aai~IQs~~Rg~la 786 (1048)
.....||+.|||++. ...+.....-++.+|++.||+++|+.|....+ .+++...++++||+.+|+...
T Consensus 566 P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q--------~~~~~~~~~i~iqs~~r~f~~ 637 (1401)
T KOG2128|consen 566 PFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQ--------YFKDNMTKIIKIQSKIRKFPN 637 (1401)
T ss_pred chHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHH--------HHHHhhhhHHHHHHHHHhccc
Confidence 467899999999984 33344556789999999999999999987665 335556789999999999999
Q ss_pred HHHhh-hhhhhhccchhHHHHHHhcccccccccCchHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001592 787 RKQLK-MHKLKQSNPVNAKVKRRSGRKSSDMKDVPQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQ 858 (1048)
Q Consensus 787 Rr~~~-l~~~~~~~~~~~r~~~~~~~~~~e~~~~leee~~~l~~~l~eLq~r~~e~e~~l~eleeE~~~L~~~ 858 (1048)
|..|+ +.-.+-.+-+.++.-....-. .+.....+-++.+++.++...-+...++++.++++.+.+.-|-+-
T Consensus 638 r~~y~~L~~s~npsl~~vrkFV~lld~-~~~df~~e~~le~lr~eIsrk~~sne~Lekdi~~md~kIgLLvKN 709 (1401)
T KOG2128|consen 638 RKDYKLLFTSENPSLETVRKFVHLLDQ-TDVDFEEELELEKLREEISRKIRSNEQLEKDINEMDEKIGLLVKN 709 (1401)
T ss_pred chHHHHHhcCCCCchhhHHhhhhhcCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhc
Confidence 99999 666555555555554333221 112222344566777777777777777777777776666655443
No 30
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.72 E-value=0.002 Score=42.83 Aligned_cols=20 Identities=35% Similarity=0.496 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 001592 734 NGVITLQSFARGENTRRRHA 753 (1048)
Q Consensus 734 ~aai~IQs~~Rg~~aRr~~~ 753 (1048)
.++++||++|||+++|+.|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 45667777777777776653
No 31
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.48 E-value=0.0024 Score=73.67 Aligned_cols=57 Identities=26% Similarity=0.376 Sum_probs=45.2
Q ss_pred ecCCCCCCCCCCHHHHHHHhhcCCCCCchhHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHH
Q 001592 75 AVNPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETA 137 (1048)
Q Consensus 75 avNP~k~l~ly~~~~~~~y~~~~~~~PHiyaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~ 137 (1048)
++|||...| |+..+...++.+..-|-|-| -+..|.--..||+||++||.|||||+-.
T Consensus 23 ~~Npf~~~p-~s~rY~~ilk~R~~LPvw~~-----k~~F~~~l~~nQ~~v~vGetgsGKttQi 79 (699)
T KOG0925|consen 23 AINPFNGKP-YSQRYYDILKKRRELPVWEQ-----KEEFLKLLLNNQIIVLVGETGSGKTTQI 79 (699)
T ss_pred hcCCCCCCc-CcHHHHHHHHHHhcCchHHh-----HHHHHHHHhcCceEEEEecCCCCccccC
Confidence 499999999 88888888877766665533 3555666678999999999999999754
No 32
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.16 E-value=0.022 Score=39.92 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001592 735 GVITLQSFARGENTRRRH 752 (1048)
Q Consensus 735 aai~IQs~~Rg~~aRr~~ 752 (1048)
+++.||++|||+++|+.|
T Consensus 5 aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 5 AAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 444445555555544444
No 33
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.09 E-value=0.016 Score=55.85 Aligned_cols=23 Identities=48% Similarity=0.595 Sum_probs=21.2
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001592 122 SIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL 144 (1048)
.|+|+|.||||||+.++.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998875
No 34
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.01 E-value=0.015 Score=40.75 Aligned_cols=21 Identities=48% Similarity=0.711 Sum_probs=18.9
Q ss_pred hhhhhhhhhhhhhHHHHHHhh
Q 001592 771 LREIICLQSAIRGWLVRKQLK 791 (1048)
Q Consensus 771 ~~aai~IQs~~Rg~laRr~~~ 791 (1048)
..+++.||+.|||+++|+.|+
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 468999999999999999984
No 35
>PTZ00014 myosin-A; Provisional
Probab=94.94 E-value=0.031 Score=71.13 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhHhHhhHHHHHHhhhhhhhhhhhhhHHHHHHh
Q 001592 733 CNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQL 790 (1048)
Q Consensus 733 r~aai~IQs~~Rg~~aRr~~~~~r~~aa~~iQ~~~~~~~~aai~IQs~~Rg~laRr~~ 790 (1048)
...++.||++|||+++|++|.+++ .++++||+.||+|++++..
T Consensus 777 ~~~~~~iq~~~r~~~~r~~~~~~~---------------~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 777 EPLVSVLEALILKIKKKRKVRKNI---------------KSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhcc
Confidence 346889999999999999999875 4789999999999998753
No 36
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=94.19 E-value=1.7 Score=57.14 Aligned_cols=85 Identities=24% Similarity=0.271 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhhccchhhhhhhhhhHHHHHH-HHHHHHHHHHHHHhhhhh-hHhHhhHHH---------HHHhhhhhhhh
Q 001592 710 LQAIIRLQKCFRGYQARSRFRELCNGVITLQ-SFARGENTRRRHASLGKS-CSAVVPEIR---------DEQLREIICLQ 778 (1048)
Q Consensus 710 ~~aai~IQ~~~Rg~~aRr~y~~~r~aai~IQ-s~~Rg~~aRr~~~~~r~~-aa~~iQ~~~---------~~~~~aai~IQ 778 (1048)
..+++.+|..||....|+.|+....+++.+| ..+|....+......... +++.+|+.| ....+..+.+|
T Consensus 793 ~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~ 872 (1463)
T COG5022 793 WRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQ 872 (1463)
T ss_pred HHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHH
Confidence 3567788888888888888888888888888 555665555544333333 777777777 22345678899
Q ss_pred hhhhhHHHHHHhh-hhh
Q 001592 779 SAIRGWLVRKQLK-MHK 794 (1048)
Q Consensus 779 s~~Rg~laRr~~~-l~~ 794 (1048)
+.+|.-.|+|++. +..
T Consensus 873 ~~~r~~~a~r~~~e~k~ 889 (1463)
T COG5022 873 SAQRVELAERQLQELKI 889 (1463)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999999999999 443
No 37
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.81 E-value=0.043 Score=53.02 Aligned_cols=22 Identities=50% Similarity=0.501 Sum_probs=21.0
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL 144 (1048)
|+|+|.+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999986
No 38
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=93.77 E-value=0.046 Score=53.24 Aligned_cols=29 Identities=34% Similarity=0.447 Sum_probs=20.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
+...+++|+|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 34678999999999999999999887654
No 39
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=93.68 E-value=0.052 Score=56.03 Aligned_cols=33 Identities=30% Similarity=0.518 Sum_probs=22.5
Q ss_pred hhCCCceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 115 MGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 115 ~~~~~~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
...+...+|+|.|++|+|||...+.+++++..-
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 456778999999999999999999998887663
No 40
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=93.66 E-value=4.1 Score=49.97 Aligned_cols=32 Identities=28% Similarity=0.579 Sum_probs=25.0
Q ss_pred HHHHHHHHhhhccchhhhhhhhhhHHHHHHHH
Q 001592 711 QAIIRLQKCFRGYQARSRFRELCNGVITLQSF 742 (1048)
Q Consensus 711 ~aai~IQ~~~Rg~~aRr~y~~~r~aai~IQs~ 742 (1048)
.+++++|++.|||++|++++........+-+.
T Consensus 814 e~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~l 845 (1259)
T KOG0163|consen 814 ECVLKAQRIARGYLARKRHRPRIAGIRKINAL 845 (1259)
T ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Confidence 46789999999999999999876655544443
No 41
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.52 E-value=0.074 Score=58.83 Aligned_cols=28 Identities=36% Similarity=0.469 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
.....++|+|++|+|||+.++.+...+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3356899999999999999998876653
No 42
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.52 E-value=0.055 Score=56.14 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001592 121 QSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~yL 144 (1048)
+.|+|+|.||||||+.++.+...+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999887765
No 43
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.45 E-value=0.1 Score=50.79 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=25.7
Q ss_pred hCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 116 GDGVNQSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 116 ~~~~~QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
.......|+|.|++|+|||..++.+.+.+.
T Consensus 15 ~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 15 ELPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred hCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 344567999999999999999999998875
No 44
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.22 E-value=0.077 Score=46.36 Aligned_cols=22 Identities=45% Similarity=0.607 Sum_probs=20.7
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL 144 (1048)
|.|+|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999887
No 45
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.55 E-value=0.085 Score=51.13 Aligned_cols=23 Identities=43% Similarity=0.723 Sum_probs=21.6
Q ss_pred EEEcCCCCCChhhHHHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL~ 145 (1048)
|+|.|++|+|||+.++.+.+++-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 78999999999999999999974
No 46
>PRK05480 uridine/cytidine kinase; Provisional
Probab=92.48 E-value=0.11 Score=55.39 Aligned_cols=27 Identities=37% Similarity=0.340 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
.+.--|.|+|.||||||+.++.|.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998876
No 47
>PRK06696 uridine kinase; Validated
Probab=92.46 E-value=0.17 Score=54.69 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 105 AIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 105 aiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
.+|+..+.. ..+..--|.|+|.||||||+.++.|.+.|..
T Consensus 9 ~la~~~~~~--~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 9 ELAEHILTL--NLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHh--CCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345555432 3456778899999999999999999988854
No 48
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.45 E-value=0.1 Score=55.52 Aligned_cols=25 Identities=24% Similarity=0.615 Sum_probs=22.3
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 122 SIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL~~ 146 (1048)
.|+|+|++|||||++.+.++.++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999888754
No 49
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=92.42 E-value=0.47 Score=60.15 Aligned_cols=61 Identities=26% Similarity=0.365 Sum_probs=50.6
Q ss_pred HHHHHHHhhhccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHhhHHHHHHhhhhhhhhhhhhhHHHHHHhh
Q 001592 712 AIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK 791 (1048)
Q Consensus 712 aai~IQ~~~Rg~~aRr~y~~~r~aai~IQs~~Rg~~aRr~~~~~r~~aa~~iQ~~~~~~~~aai~IQs~~Rg~laRr~~~ 791 (1048)
..+.++..++++..|. ...++..||..+|||+.|+.|..+++ .++.||+++||+-.|+.|+
T Consensus 793 ~~m~~~~a~~~~~~r~----~~~aa~~iq~~f~~yk~r~~~l~tr~---------------p~v~iqa~~rg~q~r~dy~ 853 (975)
T KOG0520|consen 793 VSMKASSAFSMCDDRS----DPAAASRIQKKFRGYKQRKEFLSTRQ---------------PIVKIQAAVRGYQVRKDYR 853 (975)
T ss_pred hhhhcccchhcCcccc----chhHHHHhhhhhhhHHhhhhhcccCC---------------ccccchhhhhchhHhhhhh
Confidence 3466777777555443 34678999999999999999999885 5899999999999999999
No 50
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=92.27 E-value=0.15 Score=52.03 Aligned_cols=30 Identities=37% Similarity=0.348 Sum_probs=25.9
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHccC
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYLAALGG 149 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL~~~~~ 149 (1048)
.-.|.|+|.||||||+.++.+-+.|-..+.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~ 31 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGI 31 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 357999999999999999999999987653
No 51
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.24 E-value=0.15 Score=58.28 Aligned_cols=34 Identities=29% Similarity=0.481 Sum_probs=27.6
Q ss_pred HHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 111 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 111 y~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
...+...+. .|||+|..|||||++.+.++.++..
T Consensus 137 L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 137 IRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 445555554 5999999999999999999998854
No 52
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.23 E-value=0.12 Score=49.45 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFAM 141 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il 141 (1048)
..+.+.|.|+||||||+.++.++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45789999999999999999875
No 53
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=92.12 E-value=0.12 Score=52.31 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~y 143 (1048)
...|+|.|+||||||+.+..+++.
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 688999999999999999877764
No 54
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.08 E-value=0.11 Score=55.18 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
..+.|+|.|.||||||+.++.+...+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56889999999999999999998865
No 55
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=92.02 E-value=0.1 Score=55.08 Aligned_cols=26 Identities=50% Similarity=0.535 Sum_probs=23.4
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 123 IIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
|-|+|.||||||+.++.+...|...+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccC
Confidence 77999999999999999999997544
No 56
>PRK05541 adenylylsulfate kinase; Provisional
Probab=92.00 E-value=0.13 Score=53.23 Aligned_cols=29 Identities=34% Similarity=0.346 Sum_probs=25.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
.....|+|+|.||||||+.++.+...|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999888864
No 57
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.99 E-value=0.17 Score=56.32 Aligned_cols=35 Identities=26% Similarity=0.487 Sum_probs=26.8
Q ss_pred HHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 111 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 111 y~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
+..+.... .-.|+|+|++|||||++.+.++.++..
T Consensus 72 l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 72 FRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred HHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 44554322 346999999999999999999988754
No 58
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=91.98 E-value=0.11 Score=49.93 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
.+.|+|.|.+|+|||+.++.+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999998877654
No 59
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.96 E-value=0.24 Score=49.28 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
..+..|+++|+.|||||+.+|.+++.|
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999988876
No 60
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.89 E-value=0.12 Score=54.67 Aligned_cols=22 Identities=45% Similarity=0.575 Sum_probs=20.0
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL 144 (1048)
|.|+|.||||||+.++.+...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999988776
No 61
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=91.80 E-value=0.15 Score=54.54 Aligned_cols=27 Identities=37% Similarity=0.372 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
.+...|.|+|.||||||+.++.+...|
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 455778899999999999998887765
No 62
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.75 E-value=0.11 Score=58.43 Aligned_cols=28 Identities=39% Similarity=0.443 Sum_probs=24.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
++.+.+=|-||||||||.+++.||..|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4568888999999999999999999874
No 63
>PRK06762 hypothetical protein; Provisional
Probab=91.69 E-value=0.15 Score=52.10 Aligned_cols=25 Identities=48% Similarity=0.586 Sum_probs=22.8
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL 144 (1048)
+..|+|+|.+|||||+.++.+.+++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999887
No 64
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=91.64 E-value=0.13 Score=53.71 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL 144 (1048)
..-|||||.||+|||+..|.++.-.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4568999999999999999988754
No 65
>PRK08233 hypothetical protein; Provisional
Probab=91.62 E-value=0.11 Score=53.62 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001592 121 QSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~yL 144 (1048)
.-|.|+|.||||||+.++.+..+|
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhC
Confidence 568899999999999998887775
No 66
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=91.44 E-value=0.13 Score=52.53 Aligned_cols=23 Identities=48% Similarity=0.616 Sum_probs=20.8
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001592 122 SIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL 144 (1048)
-|+|+|++|||||+.++.+.+.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998765
No 67
>PTZ00301 uridine kinase; Provisional
Probab=91.26 E-value=0.16 Score=54.67 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=20.0
Q ss_pred EEEcCCCCCChhhHHHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL~ 145 (1048)
|-|+|.||||||+.++.|.+.|.
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHHH
Confidence 66899999999999998887764
No 68
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=91.25 E-value=0.16 Score=50.40 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=20.3
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL 144 (1048)
|+|+|.+|||||+.++.+...+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998765
No 69
>PRK06547 hypothetical protein; Provisional
Probab=91.20 E-value=0.3 Score=50.75 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=24.3
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 117 DGVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 117 ~~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
.....-|+|+|.||||||+.++.+.+.+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5667889999999999999999987764
No 70
>PRK00131 aroK shikimate kinase; Reviewed
Probab=91.15 E-value=0.19 Score=51.45 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.7
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
.+..|+|+|.+|||||+.++.+-+.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998876
No 71
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=91.10 E-value=0.62 Score=50.61 Aligned_cols=33 Identities=30% Similarity=0.370 Sum_probs=28.5
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHHHHccC
Q 001592 117 DGVNQSIIISGESGAGKTETAKFAMQYLAALGG 149 (1048)
Q Consensus 117 ~~~~QsIiisGESGaGKTet~k~il~yL~~~~~ 149 (1048)
.+.+.-|.|+|.||||||+.++.+...|...++
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 466788999999999999999999998877554
No 72
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=91.03 E-value=0.17 Score=52.87 Aligned_cols=24 Identities=42% Similarity=0.444 Sum_probs=21.7
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL~~ 146 (1048)
|.|+|.||||||+.++.+...|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999888764
No 73
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=91.00 E-value=0.19 Score=52.09 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL 144 (1048)
.+-||++|-||||||+.+|.+.+-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999887654
No 74
>PF13245 AAA_19: Part of AAA domain
Probab=90.99 E-value=0.28 Score=43.91 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
.+...+|.|..|||||++...++.++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4667788999999999998888888875
No 75
>PRK07261 topology modulation protein; Provisional
Probab=90.96 E-value=0.17 Score=52.53 Aligned_cols=22 Identities=41% Similarity=0.439 Sum_probs=19.1
Q ss_pred EEEEcCCCCCChhhHHHHHHHH
Q 001592 122 SIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~y 143 (1048)
-|+|.|.||||||+.++.+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999987544
No 76
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=90.89 E-value=0.17 Score=54.73 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.0
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL~~ 146 (1048)
|-|+|.||||||++++.|...|..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhh
Confidence 568999999999999999888754
No 77
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=90.85 E-value=0.21 Score=51.97 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=22.6
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHH
Q 001592 122 SIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL~ 145 (1048)
++++.|.||.|||++++.+-++|-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999987
No 78
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.84 E-value=0.35 Score=51.94 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=30.2
Q ss_pred HHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 109 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 109 ~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
.+.+.+.....+..|+|.|++|+|||..++.+.+++..
T Consensus 27 ~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 27 AALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444444566789999999999999999999988764
No 79
>PRK08118 topology modulation protein; Reviewed
Probab=90.70 E-value=0.2 Score=51.77 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 121 QSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
+-|+|.|.+|||||+.++.+-+.+-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999887753
No 80
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.68 E-value=0.17 Score=53.04 Aligned_cols=26 Identities=31% Similarity=0.622 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
...|+|+|++|||||++.+.++.++-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 46799999999999999999888764
No 81
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=90.58 E-value=0.21 Score=53.62 Aligned_cols=26 Identities=46% Similarity=0.590 Sum_probs=21.1
Q ss_pred ceEEE--EcCCCCCChhhHHHHHHHHHH
Q 001592 120 NQSII--ISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 120 ~QsIi--isGESGaGKTet~k~il~yL~ 145 (1048)
+++|| |+|-||||||+.++.+...|-
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 56565 489999999999998877764
No 82
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=90.51 E-value=0.18 Score=56.16 Aligned_cols=20 Identities=40% Similarity=0.617 Sum_probs=17.4
Q ss_pred eEEEEcCCCCCChhhHHHHH
Q 001592 121 QSIIISGESGAGKTETAKFA 140 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~i 140 (1048)
+-|||||-||||||++.+.+
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l 21 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL 21 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH
Confidence 56999999999999987665
No 83
>PRK08084 DNA replication initiation factor; Provisional
Probab=90.45 E-value=0.41 Score=52.27 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=31.6
Q ss_pred HHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 107 ADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 107 A~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
|-.+.+++.......+++|.|++|+|||+.+..+.+++...
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~ 72 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR 72 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 33455555555556799999999999999999888887653
No 84
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=90.33 E-value=2.5 Score=55.45 Aligned_cols=67 Identities=30% Similarity=0.426 Sum_probs=50.0
Q ss_pred HHHHHhhhccchhhhhhhhh-------hHHHHHHHHHHHHHHHHHHHhhhhhhHhHhhHHHHHHhhhhhhhhhhhhhHHH
Q 001592 714 IRLQKCFRGYQARSRFRELC-------NGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLV 786 (1048)
Q Consensus 714 i~IQ~~~Rg~~aRr~y~~~r-------~aai~IQs~~Rg~~aRr~~~~~r~~aa~~iQ~~~~~~~~aai~IQs~~Rg~la 786 (1048)
.++|+..||+..|..+.... -.+.-||+.|||++. |.-... +|.....-++.+|+..||.++
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~--------~~~~~~~evv~~qs~~R~~ls 607 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDV--------YLDSAKKEVVKFQSLTRGALS 607 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHH--------HHHHhhHHHHHHHHHHHHHHH
Confidence 34599999999888876554 357789999999985 322211 233445679999999999999
Q ss_pred HHHhh
Q 001592 787 RKQLK 791 (1048)
Q Consensus 787 Rr~~~ 791 (1048)
|+.+.
T Consensus 608 rk~~~ 612 (1401)
T KOG2128|consen 608 RKKYS 612 (1401)
T ss_pred HhhHH
Confidence 99988
No 85
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.21 E-value=0.2 Score=57.94 Aligned_cols=35 Identities=23% Similarity=0.460 Sum_probs=26.8
Q ss_pred HHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 111 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 111 y~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
+..+.. .....|+|+|++|||||++.+.++.++..
T Consensus 114 l~~~~~-~~~g~ili~G~tGSGKTT~l~al~~~i~~ 148 (343)
T TIGR01420 114 LRELAE-RPRGLILVTGPTGSGKSTTLASMIDYINK 148 (343)
T ss_pred HHHHHh-hcCcEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 344442 23577999999999999999999888643
No 86
>PF05729 NACHT: NACHT domain
Probab=90.17 E-value=0.25 Score=49.76 Aligned_cols=27 Identities=37% Similarity=0.427 Sum_probs=23.8
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 122 SIIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
-++|+|+.|+|||+.++.++..++.-.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 489999999999999999998887754
No 87
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=90.15 E-value=0.18 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCChhhHHHHHHHH
Q 001592 121 QSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~y 143 (1048)
+.|+|+|.||||||+..+.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 57999999999999999888543
No 88
>PRK00889 adenylylsulfate kinase; Provisional
Probab=90.10 E-value=0.35 Score=49.98 Aligned_cols=29 Identities=31% Similarity=0.363 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
....|+|.|.+|||||+.++.+...|...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999998653
No 89
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=90.10 E-value=0.23 Score=56.39 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
...|+|+|.+|||||++.+.++.++..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 357999999999999999999999865
No 90
>PF12846 AAA_10: AAA-like domain
Probab=90.10 E-value=0.25 Score=55.00 Aligned_cols=30 Identities=33% Similarity=0.460 Sum_probs=26.2
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHccC
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYLAALGG 149 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL~~~~~ 149 (1048)
|..++|.|.||||||++++.++.++...+.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~ 30 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGP 30 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCC
Confidence 456899999999999999999998887664
No 91
>PRK14737 gmk guanylate kinase; Provisional
Probab=90.05 E-value=0.21 Score=52.65 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL 144 (1048)
+-.|||+|.||||||+.++.+++.+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4579999999999999999887754
No 92
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=89.98 E-value=0.18 Score=51.43 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.9
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL 144 (1048)
|+|.|.||||||+.++.+-+.|
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 6899999999999999988776
No 93
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=89.88 E-value=0.34 Score=56.24 Aligned_cols=36 Identities=25% Similarity=0.500 Sum_probs=29.4
Q ss_pred HHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 111 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 111 y~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
+........+.+|+|+|++|+|||.+++.+++.|..
T Consensus 31 l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 31 LRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred HHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344444667889999999999999999999988754
No 94
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=89.85 E-value=0.2 Score=50.02 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.8
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL 144 (1048)
|+|.|.||||||+.++.+++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999888765
No 95
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=89.82 E-value=0.22 Score=52.51 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.4
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL 144 (1048)
|.|+|-||||||+.++.+.+.+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999998887663
No 96
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.72 E-value=41 Score=38.11 Aligned_cols=56 Identities=21% Similarity=0.310 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhc
Q 001592 845 LGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEM----WQKQMASLQMSLAAARKSLAS 900 (1048)
Q Consensus 845 l~eleeE~~~L~~~l~~~e~~~~e~e~k~~~~ee~----~qk~~~~Lq~~La~~kk~L~~ 900 (1048)
+..++.+.......++++..+..++|-.++..++. +.++|..|...-..++..|..
T Consensus 144 i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 144 IERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33344444445555556666666666666555544 578888888888888888764
No 97
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=89.67 E-value=0.24 Score=57.53 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=25.8
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
...-|+|+|++|||||++.+.++.++...
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~ 161 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEA 161 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 46789999999999999999999998653
No 98
>PRK14738 gmk guanylate kinase; Provisional
Probab=89.60 E-value=0.27 Score=52.60 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
....-|||+|.||||||+.++.+++.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45678999999999999988777654
No 99
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=89.48 E-value=0.21 Score=55.51 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=24.8
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
....|+|+|+.|||||++.+.++.++-.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred cceEEEEECCCccccchHHHHHhhhccc
Confidence 4578999999999999999999988755
No 100
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=89.46 E-value=0.28 Score=46.66 Aligned_cols=24 Identities=38% Similarity=0.382 Sum_probs=21.6
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL~~ 146 (1048)
|.|.|++|.|||..++.++++|..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999888765
No 101
>PRK03846 adenylylsulfate kinase; Provisional
Probab=89.46 E-value=0.49 Score=50.17 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=27.5
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 117 DGVNQSIIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 117 ~~~~QsIiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
..+...|+|+|.||||||+.++.+...|...+
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~ 52 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELG 52 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 45678999999999999999999999886543
No 102
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=89.44 E-value=0.29 Score=49.54 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=22.0
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL~~ 146 (1048)
|+|+|.||||||+.++.+..++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998864
No 103
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=89.42 E-value=0.57 Score=52.84 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=25.0
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 117 DGVNQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 117 ~~~~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
.+.+.-|-|+|.||||||++++.+...|...
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRW 89 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3456777799999999999999887777543
No 104
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.33 E-value=0.49 Score=55.20 Aligned_cols=52 Identities=19% Similarity=0.398 Sum_probs=37.8
Q ss_pred HHHHhhcCCC----CCchhHHHHHHHHHhhh-CCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 90 ITAYRQKVMD----SPHVYAIADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 90 ~~~y~~~~~~----~PHiyaiA~~Ay~~m~~-~~~~QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
.+.|+..... .+|+-.. +.++.. .+-+++++++|+.|+|||+.++.+.+.|-
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~----l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTA----ISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred HHHhCCCchhhccChHHHHHH----HHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 4566655433 4776544 334333 45689999999999999999999999885
No 105
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=89.24 E-value=0.27 Score=57.29 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=24.3
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
+--|+|+|++|||||++.+.+++|+..
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 447999999999999999999999865
No 106
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=89.23 E-value=0.3 Score=50.63 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.4
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL~~ 146 (1048)
|+|+|++|+|||+..+.++++|..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 899999999999999999999865
No 107
>PRK06217 hypothetical protein; Validated
Probab=89.22 E-value=0.26 Score=51.48 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.3
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001592 122 SIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL 144 (1048)
-|+|+|-||||||+.++.+-+.|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 39999999999999999887655
No 108
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=89.08 E-value=0.23 Score=51.49 Aligned_cols=24 Identities=38% Similarity=0.447 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001592 121 QSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~yL 144 (1048)
+-|+|.|.||||||+.++.+++.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 568999999999999999998854
No 109
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=89.02 E-value=0.23 Score=49.10 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=20.5
Q ss_pred EEEcCCCCCChhhHHHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL~ 145 (1048)
||+.|.+|||||+.++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 89999999999999999877654
No 110
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=89.01 E-value=0.25 Score=53.79 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 122 SIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL~~ 146 (1048)
-+++-|+||||||++.|+|-+-+.-
T Consensus 29 f~vliGpSGsGKTTtLkMINrLiep 53 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIEP 53 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4688999999999999999765533
No 111
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=88.90 E-value=0.26 Score=53.74 Aligned_cols=19 Identities=37% Similarity=0.615 Sum_probs=16.4
Q ss_pred EEEEcCCCCCChhhHHHHH
Q 001592 122 SIIISGESGAGKTETAKFA 140 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~i 140 (1048)
-|||||-||||||.+.+.+
T Consensus 3 lvIVTGlSGAGKsvAl~~l 21 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVL 21 (286)
T ss_pred EEEEecCCCCcHHHHHHHH
Confidence 4899999999999887655
No 112
>PRK12377 putative replication protein; Provisional
Probab=88.69 E-value=0.7 Score=50.99 Aligned_cols=46 Identities=26% Similarity=0.301 Sum_probs=33.9
Q ss_pred CchhHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 101 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 101 PHiyaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
-|+++.|..-...... ..++|+|+|.+|+|||..+..|.++|..-+
T Consensus 84 ~~a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~g 129 (248)
T PRK12377 84 RYALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAKG 129 (248)
T ss_pred HHHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3455555544444332 357999999999999999999999998643
No 113
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=88.65 E-value=0.34 Score=49.36 Aligned_cols=23 Identities=43% Similarity=0.537 Sum_probs=21.3
Q ss_pred EEEcCCCCCChhhHHHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL~ 145 (1048)
|.|||.+|||||+-++.+-.+|-
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 88999999999999999988875
No 114
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=88.57 E-value=0.4 Score=47.84 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=22.7
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 123 IIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL~~~ 147 (1048)
++|+|++|+|||+.++.++..++.-
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~ 26 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK 26 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc
Confidence 6899999999999999999988763
No 115
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=88.54 E-value=0.38 Score=50.09 Aligned_cols=27 Identities=37% Similarity=0.377 Sum_probs=23.8
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 122 SIIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
.|.|+|.||||||+..+.++..|...+
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~l~~~g 34 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPALCARG 34 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHHHhhcC
Confidence 678899999999999999999987643
No 116
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=88.53 E-value=0.25 Score=56.99 Aligned_cols=26 Identities=23% Similarity=0.511 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
...|+|+|.+|||||+..+.++.++-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 45699999999999999999988763
No 117
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=88.49 E-value=0.33 Score=48.68 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=21.3
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001592 122 SIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL 144 (1048)
+|+|.|.+|||||+.+|.+-++|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998876
No 118
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=88.45 E-value=0.65 Score=48.09 Aligned_cols=34 Identities=29% Similarity=0.261 Sum_probs=28.8
Q ss_pred hCCCceEEEEcCCCCCChhhHHHHHHHHHHHccC
Q 001592 116 GDGVNQSIIISGESGAGKTETAKFAMQYLAALGG 149 (1048)
Q Consensus 116 ~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~ 149 (1048)
...++-.|-++|-||||||+.+..+-+.|-..+-
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~ 52 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGY 52 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCC
Confidence 3455678999999999999999999998888764
No 119
>PRK12608 transcription termination factor Rho; Provisional
Probab=88.29 E-value=0.49 Score=54.88 Aligned_cols=42 Identities=21% Similarity=0.119 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 105 AIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 105 aiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
.+..++...|.--++-|-++|+|++|+|||+.++.+.+.+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 678889999988889999999999999999999998887765
No 120
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=87.95 E-value=0.4 Score=49.82 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.0
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001592 122 SIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL 144 (1048)
.|+|.|.+|||||+.++.+.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998776
No 121
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=87.91 E-value=0.78 Score=49.57 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=26.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
..+..++|.|++|+|||..++.+.+++...+
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~ 70 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGG 70 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 4567999999999999999999988775543
No 122
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=87.86 E-value=0.36 Score=48.41 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=18.6
Q ss_pred EEEcCCCCCChhhHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~y 143 (1048)
|+|+|.+|||||+.++.+.+-
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 789999999999999987654
No 123
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=87.82 E-value=0.58 Score=54.91 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=29.2
Q ss_pred HHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 111 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 111 y~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
+........+.+++|+|.+|+|||.+++.+++.+..
T Consensus 46 l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 46 LRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred HHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 334444667789999999999999999999988754
No 124
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=87.79 E-value=0.32 Score=55.94 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=22.3
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 121 QSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
..|+|+|++|||||+..+.++.++.
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 4599999999999999999888863
No 125
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=87.76 E-value=0.63 Score=49.39 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=33.1
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHccCCCchHHHHHHhh-----hHHHHHhhc
Q 001592 123 IIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQT-----NHILEAFGN 170 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL~~~~~~~~~i~~~il~s-----n~iLEAFGN 170 (1048)
|.|+|..|||||+.++++-+.+-..--+.+.+...++.. ..+.+.||.
T Consensus 4 i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~ 56 (195)
T PRK14730 4 IGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGN 56 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCH
Confidence 789999999999999988765311111234666666642 467788887
No 126
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=87.73 E-value=0.45 Score=47.73 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=24.5
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 122 SIIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
.|.|.|.+|||||+.++.++++|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 478999999999999999999998755
No 127
>PRK14527 adenylate kinase; Provisional
Probab=87.72 E-value=0.47 Score=49.92 Aligned_cols=28 Identities=36% Similarity=0.413 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
.+...|+|.|.+|||||+.++.+.+.+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3568899999999999999999877664
No 128
>PRK04182 cytidylate kinase; Provisional
Probab=87.68 E-value=0.38 Score=49.51 Aligned_cols=23 Identities=43% Similarity=0.624 Sum_probs=20.6
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001592 122 SIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL 144 (1048)
.|+|+|.+|||||+.++.+-+.|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999997664
No 129
>PRK13764 ATPase; Provisional
Probab=87.66 E-value=0.47 Score=58.44 Aligned_cols=27 Identities=33% Similarity=0.585 Sum_probs=23.7
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
...|+|+|.+|||||+++..++.|+..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 355999999999999999999999864
No 130
>PRK07667 uridine kinase; Provisional
Probab=87.56 E-value=0.84 Score=48.24 Aligned_cols=26 Identities=23% Similarity=0.143 Sum_probs=22.5
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 121 QSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
--|-|+|-||||||+.++.+.+.|..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35678999999999999999888865
No 131
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=87.36 E-value=0.52 Score=57.07 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=26.1
Q ss_pred HHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 110 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 110 Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
.+..+... ..--|+|+|++|||||++...++.++.
T Consensus 233 ~l~~~~~~-~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 233 RFERLIRR-PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred HHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 34444432 234689999999999999998888774
No 132
>PRK04040 adenylate kinase; Provisional
Probab=87.30 E-value=0.5 Score=49.86 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=22.6
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 121 QSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
.-|+|+|.+|||||+.++.+.+.|.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5699999999999999999988873
No 133
>PRK11637 AmiB activator; Provisional
Probab=87.27 E-value=4.6 Score=48.26 Aligned_cols=54 Identities=13% Similarity=0.192 Sum_probs=21.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001592 824 VQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSME 877 (1048)
Q Consensus 824 ~~~l~~~l~eLq~r~~e~e~~l~eleeE~~~L~~~l~~~e~~~~e~e~k~~~~e 877 (1048)
+..++..+..++.+..+++.++..++.++..+..++...+.++.+.+.++...+
T Consensus 56 i~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~ 109 (428)
T PRK11637 56 IAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELN 109 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444344444444444444444444444444444443333333
No 134
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=87.19 E-value=0.49 Score=49.09 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL 144 (1048)
++.|+|.|.+|||||+.++.+...|
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5679999999999999999987765
No 135
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=87.17 E-value=36 Score=37.34 Aligned_cols=80 Identities=15% Similarity=0.204 Sum_probs=53.9
Q ss_pred chHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001592 820 PQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAARKSLA 899 (1048)
Q Consensus 820 leee~~~l~~~l~eLq~r~~e~e~~l~eleeE~~~L~~~l~~~e~~~~e~e~k~~~~ee~~qk~~~~Lq~~La~~kk~L~ 899 (1048)
+.-++..++.....|+..+..+..++..++++...++.++...+....++++......+...++...+..+-+.++..|.
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44455555556666666666666666667777777777777777777777777777776666666666666666655554
No 136
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=87.07 E-value=0.43 Score=52.70 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=25.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHccC
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLAALGG 149 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~~~~~ 149 (1048)
.+..++-|-||||+|||++.|.++.-+--.+|
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G 68 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSG 68 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCc
Confidence 34677889999999999999999987654443
No 137
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=86.98 E-value=0.35 Score=49.70 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~y 143 (1048)
+++.+++.|.||+|||+....++..
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4589999999999999988777655
No 138
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=86.97 E-value=0.49 Score=49.53 Aligned_cols=21 Identities=43% Similarity=0.539 Sum_probs=20.0
Q ss_pred EEEcCCCCCChhhHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~y 143 (1048)
|+|.|.||||||+-++.|.+.
T Consensus 3 iiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999887
No 139
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=86.85 E-value=0.81 Score=52.28 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=25.9
Q ss_pred hhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 115 MGDGVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 115 ~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
...+....++|+|++|+|||+.++.+.+++..
T Consensus 31 ~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 31 VDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred HhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34444457999999999999999999988753
No 140
>PHA00729 NTP-binding motif containing protein
Probab=86.74 E-value=0.97 Score=49.02 Aligned_cols=38 Identities=24% Similarity=0.167 Sum_probs=28.2
Q ss_pred HHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 107 ADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 107 A~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
|......+.. ..-..|+|+|.+|+|||+.+..+.+.+.
T Consensus 5 ~k~~~~~l~~-~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 5 AKKIVSAYNN-NGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHHHhc-CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4444444433 3346899999999999999999988764
No 141
>PRK06893 DNA replication initiation factor; Validated
Probab=86.73 E-value=1 Score=48.97 Aligned_cols=46 Identities=15% Similarity=0.086 Sum_probs=32.5
Q ss_pred CchhHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 101 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 101 PHiyaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
||.. .+..+.+.+ ....+-+++|.|+||+|||..+..+.+.++.-+
T Consensus 22 ~~~~-~~~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~ 67 (229)
T PRK06893 22 NNLL-LLDSLRKNF-IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQ 67 (229)
T ss_pred ChHH-HHHHHHHHh-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4543 333333333 345667899999999999999999998876543
No 142
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=86.70 E-value=0.56 Score=48.93 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
...|+|.|.||||||+.++.+...+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999988664
No 143
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=86.63 E-value=0.59 Score=51.86 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.1
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL~~ 146 (1048)
|.|+|-||||||+.++.+.+.|..
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999988887754
No 144
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=86.61 E-value=0.5 Score=50.19 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=30.9
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHccCCCchHHHHHHhhh-----HHHHHhhc
Q 001592 123 IIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTN-----HILEAFGN 170 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL~~~~~~~~~i~~~il~sn-----~iLEAFGN 170 (1048)
|.|+|.+|||||+.++++-.+ -...-+.+.+...+++-+ .|.+.||.
T Consensus 2 i~itG~~gsGKst~~~~l~~~-g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~ 53 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEEL-GAFGISADRLAKRYTEPDSPILSELVSLLGP 53 (196)
T ss_pred EEEECCCCccHHHHHHHHHHC-CCEEEecchHHHHHHhcCcHHHHHHHHHhCh
Confidence 789999999999999876543 111112346666676643 36777775
No 145
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.56 E-value=0.84 Score=55.12 Aligned_cols=54 Identities=28% Similarity=0.389 Sum_probs=38.7
Q ss_pred HHHhhcCCC----CCchhHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 91 TAYRQKVMD----SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 91 ~~y~~~~~~----~PHiyaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
..|+-.... .+|+-..-..|+ ...+.+|+++++|..|.|||++++++-+.|-+.
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~---~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAF---TLNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHH---HcCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 456554433 477665444333 235678999999999999999999999887654
No 146
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.49 E-value=5.5 Score=43.99 Aligned_cols=70 Identities=10% Similarity=0.274 Sum_probs=49.1
Q ss_pred chHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001592 820 PQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQM 889 (1048)
Q Consensus 820 leee~~~l~~~l~eLq~r~~e~e~~l~eleeE~~~L~~~l~~~e~~~~e~e~k~~~~ee~~qk~~~~Lq~ 889 (1048)
++.+....+.+++.|..++.+....+.+++++++.++..++.++.++.+++..+.+..+.+.+++++++.
T Consensus 43 ~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 43 LQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677777777777777777777777777777777777777777777777777666666643
No 147
>PRK08727 hypothetical protein; Validated
Probab=86.47 E-value=1.1 Score=49.03 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=26.6
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 117 DGVNQSIIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 117 ~~~~QsIiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
....+.|+|+|.||+|||+.+..+...+...+
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~ 69 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQAG 69 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 34557899999999999999999988877643
No 148
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=86.46 E-value=0.73 Score=39.61 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=17.3
Q ss_pred EEEEcCCCCCChhhHHHHHHH
Q 001592 122 SIIISGESGAGKTETAKFAMQ 142 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~ 142 (1048)
..+|+|++|||||+..-.+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999988765543
No 149
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=86.45 E-value=0.53 Score=53.86 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=23.7
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
...|+|+|.+|||||++.+.++.++..
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~ 174 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVI 174 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 467999999999999999999987653
No 150
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=86.44 E-value=0.68 Score=47.71 Aligned_cols=27 Identities=41% Similarity=0.540 Sum_probs=23.8
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 122 SIIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
.|+++|++|+|||+++..+...++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 478999999999999999998887654
No 151
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=86.43 E-value=0.59 Score=53.11 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=23.4
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 117 DGVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 117 ~~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
.+.+..++++|++|+|||+.++.+.+.+
T Consensus 40 ~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 40 GRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred CCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 3446778889999999999999998765
No 152
>PRK11637 AmiB activator; Provisional
Probab=86.32 E-value=6.4 Score=47.01 Aligned_cols=55 Identities=13% Similarity=0.177 Sum_probs=24.3
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001592 823 QVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSME 877 (1048)
Q Consensus 823 e~~~l~~~l~eLq~r~~e~e~~l~eleeE~~~L~~~l~~~e~~~~e~e~k~~~~e 877 (1048)
++..++..+.+++.++.+.+.++.+.+.++..+..++...+.++.+.+.++...+
T Consensus 48 ~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~ 102 (428)
T PRK11637 48 QLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLN 102 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444444333
No 153
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=86.00 E-value=0.54 Score=48.53 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCCChhhHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQ 142 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~ 142 (1048)
...|+|.|+||+||||++=.+++
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999887775
No 154
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=85.96 E-value=0.57 Score=48.63 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=20.7
Q ss_pred EEEcCCCCCChhhHHHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL~ 145 (1048)
|+|.|.+|||||+.++.+.+.+-
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999988763
No 155
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=85.93 E-value=0.53 Score=53.06 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCCChhhHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFA 140 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~i 140 (1048)
.+-|+|+|.||||||+.++.+
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l 26 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRAL 26 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHH
Confidence 468999999999999999988
No 156
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.87 E-value=0.6 Score=52.08 Aligned_cols=74 Identities=24% Similarity=0.389 Sum_probs=47.5
Q ss_pred hcCccccccCCceEecCCCCCCCCCCHHHHHHHhhcCC--------CCCchhHHHHHHHHHhhhCCCceEEEEcCCCCCC
Q 001592 61 SRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVM--------DSPHVYAIADTAYNEMMGDGVNQSIIISGESGAG 132 (1048)
Q Consensus 61 ~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~y~~~~~--------~~PHiyaiA~~Ay~~m~~~~~~QsIiisGESGaG 132 (1048)
.-|--|+..|.-=+-||-|+..--|+- .++--+. .-|-|+. .+ ....+--|+++|.+|||
T Consensus 70 E~Dfs~~~~~~~RfRvN~f~qr~~~a~----vlR~Ip~~i~~~e~LglP~i~~-------~~-~~~~~GLILVTGpTGSG 137 (353)
T COG2805 70 ELDFSYTLPGVARFRVNAFKQRGGYAL----VLRLIPSKIPTLEELGLPPIVR-------EL-AESPRGLILVTGPTGSG 137 (353)
T ss_pred ceeEEEecCCcceEEeehhhhcCCcEE----EEeccCccCCCHHHcCCCHHHH-------HH-HhCCCceEEEeCCCCCc
Confidence 347778888888888888875432210 0110000 1144432 21 23456789999999999
Q ss_pred hhhHHHHHHHHHHH
Q 001592 133 KTETAKFAMQYLAA 146 (1048)
Q Consensus 133 KTet~k~il~yL~~ 146 (1048)
||+|.-.++.|+-.
T Consensus 138 KSTTlAamId~iN~ 151 (353)
T COG2805 138 KSTTLAAMIDYINK 151 (353)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999854
No 157
>PRK06761 hypothetical protein; Provisional
Probab=85.80 E-value=0.53 Score=52.77 Aligned_cols=26 Identities=42% Similarity=0.548 Sum_probs=23.4
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 121 QSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
.-|+|+|.+|||||+.++.+.++|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46999999999999999999998854
No 158
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=85.80 E-value=0.74 Score=49.25 Aligned_cols=51 Identities=25% Similarity=0.325 Sum_probs=32.7
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHccCCCchHHHHHHhh----hHHHHHhhcC
Q 001592 121 QSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQT----NHILEAFGNA 171 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~yL~~~~~~~~~i~~~il~s----n~iLEAFGNA 171 (1048)
=.|.|+|..|||||+.++++.+.+-.---..+.+-.+++.. .-|.+.||..
T Consensus 7 ~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~ 61 (204)
T PRK14733 7 YPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDE 61 (204)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHH
Confidence 35889999999999998888754321111123455555543 3467788863
No 159
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.77 E-value=0.87 Score=54.64 Aligned_cols=52 Identities=19% Similarity=0.338 Sum_probs=37.5
Q ss_pred HHHhhcCCC----CCchhHHHHHHHHHhhh-CCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 91 TAYRQKVMD----SPHVYAIADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 91 ~~y~~~~~~----~PHiyaiA~~Ay~~m~~-~~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
+.|+-.... .+|+... ...+.. .+..+++|++|+.|.|||++++++.+.|-.
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~----L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGA----LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHhCCCCHHHHhChHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 556644433 4777654 333334 345789999999999999999999998865
No 160
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=85.56 E-value=0.66 Score=45.55 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
+....|+++|+=|||||+-+|-+.+.|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 456889999999999999999988876
No 161
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=85.52 E-value=1.5 Score=44.39 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=25.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
..+=.|+++|+=|||||+-+|-+++.|..
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 45668899999999999999999998864
No 162
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=85.52 E-value=0.64 Score=50.49 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
.+..++=|.||||||||+.++.++-+...
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 45678899999999999999998776544
No 163
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=85.48 E-value=0.88 Score=56.43 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=28.2
Q ss_pred hCCCceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 116 GDGVNQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 116 ~~~~~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
..+..+++|++|.+|.|||++++++.+.|-+.
T Consensus 42 ~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 42 TGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 35568999999999999999999999998654
No 164
>PRK00698 tmk thymidylate kinase; Validated
Probab=85.44 E-value=0.88 Score=47.99 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.3
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
+-.|+|.|.+|||||+.++.+-++|...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999888543
No 165
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=85.42 E-value=0.78 Score=46.86 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=23.3
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 123 IIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
|.|.|.+|||||+.+..++..|...+
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G 27 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARG 27 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 67899999999999999999998654
No 166
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=85.38 E-value=0.99 Score=54.84 Aligned_cols=54 Identities=17% Similarity=0.319 Sum_probs=38.0
Q ss_pred HHHhhcCCC----CCchhHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 91 TAYRQKVMD----SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 91 ~~y~~~~~~----~PHiyaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
..|+-.... .+|+...-..|+ ...+.+++++++|+.|.|||++++++.+.|-..
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai---~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTI---LNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHH---HcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 445544432 366655333332 345668999999999999999999999988653
No 167
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.32 E-value=0.97 Score=54.92 Aligned_cols=112 Identities=28% Similarity=0.313 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHccCCCch-----HHHHH---HhhhHHHHHhhcCcCC
Q 001592 103 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEG-----IEYEI---LQTNHILEAFGNAKTS 174 (1048)
Q Consensus 103 iyaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~~~-----i~~~i---l~sn~iLEAFGNAkT~ 174 (1048)
||++-+.-.. .-+.||.|||.||+|||||+ .+-+||..-|-+.++ -..++ --|-.+-|-.|----.
T Consensus 357 vf~~R~~ll~---~ir~n~vvvivgETGSGKTT---Ql~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 357 VFACRDQLLS---VIRENQVVVIVGETGSGKTT---QLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred hHHHHHHHHH---HHhhCcEEEEEecCCCCchh---hhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 5655443332 23679999999999999996 467888876643221 11222 2234444444321000
Q ss_pred CCCCCCcc----cceEEEEECCCCceeeeEeeeeecCcccccc-ccCCCcc
Q 001592 175 RNDNSSRF----GKLIEIHFSAFGKICGAKIQTFLLEKSRVVQ-LAAGERS 220 (1048)
Q Consensus 175 ~N~NSSRf----Gk~i~l~f~~~g~i~Ga~i~~yLLEksRVv~-~~~gErn 220 (1048)
.=.-|=|| |.-..|-|-.+|.+.--++..-+|+|-.||- -...||+
T Consensus 431 ~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERs 481 (1042)
T KOG0924|consen 431 TVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERS 481 (1042)
T ss_pred ccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcc
Confidence 00112233 2233455555666555555556666655553 3334554
No 168
>PRK15453 phosphoribulokinase; Provisional
Probab=85.31 E-value=0.72 Score=51.57 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
+.=-|.|+|-||||||+.++.+.+-|
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34468999999999999988776544
No 169
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=85.29 E-value=1.7 Score=44.40 Aligned_cols=53 Identities=30% Similarity=0.355 Sum_probs=41.5
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHccCCCchHHHHHHhhhHHHHHhhcCcCCCCCCCCcccceEEEEECCCCceeeeE
Q 001592 121 QSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAK 200 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~yL~~~~~~~~~i~~~il~sn~iLEAFGNAkT~~N~NSSRfGk~i~l~f~~~g~i~Ga~ 200 (1048)
=.|.|||..|+|||+.++.+...|...+- .-|-|+.-.....|+-+|-+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~-------------------------------kvgGf~t~EVR~gGkR~GF~ 54 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGY-------------------------------KVGGFITPEVREGGKRIGFK 54 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCc-------------------------------eeeeEEeeeeecCCeEeeeE
Confidence 35999999999999999999998876532 22456666666788888988
Q ss_pred eeee
Q 001592 201 IQTF 204 (1048)
Q Consensus 201 i~~y 204 (1048)
|.+.
T Consensus 55 Ivdl 58 (179)
T COG1618 55 IVDL 58 (179)
T ss_pred EEEc
Confidence 8765
No 170
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=85.22 E-value=0.82 Score=51.43 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHhhhC--------CCceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 103 VYAIADTAYNEMMGD--------GVNQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 103 iyaiA~~Ay~~m~~~--------~~~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
++.....+...++.. .....|+|.|.+|+|||+++..+..|++..
T Consensus 169 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 169 AWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred HHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 444445555555531 235689999999999999999999888754
No 171
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=85.19 E-value=0.65 Score=45.92 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL 144 (1048)
|+|.|++|+|||+.++.+.+-+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999888777
No 172
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=85.12 E-value=0.75 Score=48.04 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL 144 (1048)
..-|||+|.||||||+.++.+++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~ 26 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF 26 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3469999999999999999888764
No 173
>PRK14528 adenylate kinase; Provisional
Probab=85.12 E-value=0.75 Score=48.35 Aligned_cols=24 Identities=42% Similarity=0.591 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001592 121 QSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~yL 144 (1048)
+.|+|.|.+|||||+.++.+-+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999997765
No 174
>PRK08356 hypothetical protein; Provisional
Probab=85.11 E-value=0.58 Score=49.46 Aligned_cols=21 Identities=38% Similarity=0.434 Sum_probs=18.5
Q ss_pred eEEEEcCCCCCChhhHHHHHH
Q 001592 121 QSIIISGESGAGKTETAKFAM 141 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il 141 (1048)
--|+|+|.+|||||+.++.+-
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 358899999999999998884
No 175
>PRK08116 hypothetical protein; Validated
Probab=84.95 E-value=1.5 Score=49.05 Aligned_cols=47 Identities=23% Similarity=0.237 Sum_probs=33.9
Q ss_pred CchhHHHHHHHHHhhhC-CCceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 101 PHVYAIADTAYNEMMGD-GVNQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 101 PHiyaiA~~Ay~~m~~~-~~~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
.+.|..|..-....... ..+..++|.|.+|+|||..+..|.++|...
T Consensus 94 ~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 94 EKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred HHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 44555555444443322 345679999999999999999999999765
No 176
>PRK14531 adenylate kinase; Provisional
Probab=84.94 E-value=0.78 Score=47.97 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.8
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001592 121 QSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~yL 144 (1048)
|-|+|.|.+|||||+.++.+-+.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 569999999999999999998775
No 177
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.86 E-value=0.68 Score=49.77 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..|.++-.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999999888644
No 178
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=84.83 E-value=0.84 Score=47.88 Aligned_cols=47 Identities=21% Similarity=0.442 Sum_probs=32.9
Q ss_pred EEEcCCCCCChhhHHHHHHHHH-HHccCCCchHHHHHHhhh-----HHHHHhhc
Q 001592 123 IIISGESGAGKTETAKFAMQYL-AALGGGSEGIEYEILQTN-----HILEAFGN 170 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL-~~~~~~~~~i~~~il~sn-----~iLEAFGN 170 (1048)
|.|+|-.|||||+.++++-+.. ..+- ..+.+..++++.+ .|.+.||.
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i-~~D~~~~~~~~~~~~~~~~i~~~fg~ 54 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI-DADKIAHQVVEKGSPAYEKIVDHFGA 54 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE-eCCHHHHHHHhcCChHHHHHHHHHCH
Confidence 7899999999999988776543 1111 2346777777643 37888983
No 179
>PRK03839 putative kinase; Provisional
Probab=84.81 E-value=0.73 Score=47.88 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=20.4
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001592 122 SIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL 144 (1048)
-|+|.|-+|||||+.++.+-+.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999987765
No 180
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=84.77 E-value=1.2 Score=50.35 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=27.3
Q ss_pred HHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 110 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 110 Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
..+.+...+..-.++|+|+.|+|||+.++.+.+.+.
T Consensus 28 ~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 28 RLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 344444444444689999999999999999988764
No 181
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=84.72 E-value=0.53 Score=54.37 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=24.5
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
--++-+-||||||||.|+..||+-|..-
T Consensus 36 GEtlAlVGESGSGKSvTa~sim~LLp~~ 63 (534)
T COG4172 36 GETLALVGESGSGKSVTALSILGLLPSP 63 (534)
T ss_pred CCEEEEEecCCCCccHHHHHHHHhcCCC
Confidence 3567888999999999999999999763
No 182
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=84.70 E-value=0.67 Score=48.60 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~y 143 (1048)
---+.++|.||||||+..|+|+.-
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 345688999999999999998653
No 183
>PRK10436 hypothetical protein; Provisional
Probab=84.63 E-value=0.66 Score=55.70 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=26.8
Q ss_pred HHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 110 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 110 Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
.+..+.. ...=-|+|+|.+|||||+|...++.++..
T Consensus 209 ~l~~~~~-~~~GliLvtGpTGSGKTTtL~a~l~~~~~ 244 (462)
T PRK10436 209 QFRQALQ-QPQGLILVTGPTGSGKTVTLYSALQTLNT 244 (462)
T ss_pred HHHHHHH-hcCCeEEEECCCCCChHHHHHHHHHhhCC
Confidence 3444442 23457899999999999999988888743
No 184
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.62 E-value=12 Score=36.69 Aligned_cols=77 Identities=14% Similarity=0.290 Sum_probs=47.3
Q ss_pred chHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 001592 820 PQEQVQALPTALAELQRRVLKAEATLGQKEEENAAL---REQLQQYDAKWLEYEAKMKSMEEMW---QKQMASLQMSLAA 893 (1048)
Q Consensus 820 leee~~~l~~~l~eLq~r~~e~e~~l~eleeE~~~L---~~~l~~~e~~~~e~e~k~~~~ee~~---qk~~~~Lq~~La~ 893 (1048)
++.++..++.++..++.....+..++..+-.+++.+ ..++..++.+..+++.+...+-+.+ ..+.++|++.++.
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQD 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 445666666666666666666666666655555443 4445555666666666666555554 4556677777776
Q ss_pred HHH
Q 001592 894 ARK 896 (1048)
Q Consensus 894 ~kk 896 (1048)
+|.
T Consensus 108 lK~ 110 (120)
T PF12325_consen 108 LKE 110 (120)
T ss_pred HHH
Confidence 654
No 185
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=84.62 E-value=0.75 Score=48.21 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQ 142 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~ 142 (1048)
...+.+.|.|++|||||+..+.|+-
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568899999999999998888754
No 186
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=84.60 E-value=0.88 Score=51.14 Aligned_cols=47 Identities=26% Similarity=0.239 Sum_probs=35.4
Q ss_pred CchhHHHHHHHHHhhhC------CCceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 101 PHVYAIADTAYNEMMGD------GVNQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 101 PHiyaiA~~Ay~~m~~~------~~~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
-|++.-|..|..--... .-|--|++.|+.|.|||..||.+-|.|.-.
T Consensus 152 ~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 152 ERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred HHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 67777777765433221 136789999999999999999999998653
No 187
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=84.60 E-value=0.74 Score=49.17 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|+||||||+..+.++-.+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999999886543
No 188
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=84.60 E-value=1.2 Score=46.51 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=24.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
+..-.|+|+|.||||||+.++.+...|..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44568999999999999999999988753
No 189
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=84.60 E-value=0.53 Score=56.87 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
+-.+.=|.||||||||+.+|.++..+.-
T Consensus 316 ~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 316 EGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3466778899999999999999887655
No 190
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=84.50 E-value=0.56 Score=56.65 Aligned_cols=29 Identities=34% Similarity=0.344 Sum_probs=25.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
.-+..=|-||||||||+++..+|.+|-.-
T Consensus 34 ~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 34 PGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 45788899999999999999999998654
No 191
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=84.49 E-value=0.58 Score=53.30 Aligned_cols=25 Identities=40% Similarity=0.567 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...|+|+|.+|||||+..+.++.++
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccC
Confidence 4689999999999999999988776
No 192
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=84.48 E-value=0.73 Score=53.02 Aligned_cols=27 Identities=30% Similarity=0.229 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|+||||||+..+.|+..+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 467899999999999999999887654
No 193
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=84.40 E-value=1.7 Score=47.00 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=29.5
Q ss_pred HHHHHhhhCC--CceEEEEcCCCCCChhhHHHHHHHHHHHccC
Q 001592 109 TAYNEMMGDG--VNQSIIISGESGAGKTETAKFAMQYLAALGG 149 (1048)
Q Consensus 109 ~Ay~~m~~~~--~~QsIiisGESGaGKTet~k~il~yL~~~~~ 149 (1048)
.|...+.... .-..++|.|+||+|||+..+.+..++.....
T Consensus 21 ~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~ 63 (219)
T PF00308_consen 21 AAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHP 63 (219)
T ss_dssp HHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccc
Confidence 4444444432 2357999999999999999988888776533
No 194
>PRK14974 cell division protein FtsY; Provisional
Probab=84.38 E-value=1.7 Score=50.09 Aligned_cols=31 Identities=35% Similarity=0.459 Sum_probs=26.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
+.+..|++.|..|+|||+++..+..+|...+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3478999999999999999999998887643
No 195
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=84.38 E-value=0.76 Score=49.19 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..|.+.-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998887654
No 196
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.38 E-value=9.5 Score=44.62 Aligned_cols=71 Identities=23% Similarity=0.285 Sum_probs=48.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001592 823 QVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAA 893 (1048)
Q Consensus 823 e~~~l~~~l~eLq~r~~e~e~~l~eleeE~~~L~~~l~~~e~~~~e~e~k~~~~ee~~qk~~~~Lq~~La~ 893 (1048)
+.+.....+..++.++.+..+++...++++..|.+...--.....+.++..+......+.++..|+.++..
T Consensus 376 ~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 376 EKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344455556666666666666667777777777777666777777777777777777777777777774
No 197
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=84.34 E-value=0.77 Score=49.30 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|++|||||+..|.++-.+
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 356889999999999999999987654
No 198
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=84.31 E-value=0.76 Score=50.53 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=22.1
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL~~ 146 (1048)
|+|+|-+|||||+.++.+-++|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999998854
No 199
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=84.30 E-value=0.69 Score=45.46 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
..+.+.|.|++|||||+..+.+...+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 46789999999999999887765443
No 200
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.26 E-value=1.3 Score=54.36 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=38.6
Q ss_pred HHHHhhcCCC----CCchhHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 90 ITAYRQKVMD----SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 90 ~~~y~~~~~~----~PHiyaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
.+.|+-.... .+|+...-..++. ..+.+.++|++|+.|+|||+.++.+.++|-.
T Consensus 7 a~KyRP~~f~diiGq~~~v~~L~~~i~---~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNSLVHALE---TQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3556654433 4777654333332 2456788999999999999999999999865
No 201
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=84.17 E-value=1.1 Score=40.44 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=23.5
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 123 IIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
|+++|..|+|||+++..+...|+..+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g 27 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG 27 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 78899999999999999999998743
No 202
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=84.15 E-value=22 Score=31.56 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001592 832 AELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYE 870 (1048)
Q Consensus 832 ~eLq~r~~e~e~~l~eleeE~~~L~~~l~~~e~~~~e~e 870 (1048)
+.|+.++..+-..+..++.|++.|+++...+.....++.
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~ 45 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344444444444444444444444444444443333333
No 203
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=84.12 E-value=0.77 Score=52.80 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.||||||||+..+.|+..+
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 456899999999999999999887654
No 204
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=84.11 E-value=1.1 Score=49.78 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=26.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
...-.|++.|++|+|||+.++.+-+.|..++
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 3456799999999999999999998886544
No 205
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=84.10 E-value=0.74 Score=51.93 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001592 121 QSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~yL 144 (1048)
+.||++|.+|||||+.++.+.+.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 679999999999999999988775
No 206
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.02 E-value=0.83 Score=48.79 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999998886543
No 207
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=83.97 E-value=0.84 Score=48.62 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|+||||||+..+.|+-.+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999998886543
No 208
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=83.89 E-value=0.8 Score=50.16 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=23.1
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 121 QSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
=.|+|-|.||||||+..+.++.++..
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 36899999999999999999988764
No 209
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=83.84 E-value=0.97 Score=47.09 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=22.7
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 123 IIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL~~~ 147 (1048)
|+|.|..|||||+.++.+-++|...
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~ 27 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEAR 27 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 8999999999999999999998653
No 210
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=83.84 E-value=1.2 Score=46.12 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=20.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQ 142 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~ 142 (1048)
..+..|+|.||+|+||+..++.|-+
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 4568999999999999999988855
No 211
>PRK13342 recombination factor protein RarA; Reviewed
Probab=83.83 E-value=1.2 Score=52.90 Aligned_cols=43 Identities=26% Similarity=0.364 Sum_probs=33.4
Q ss_pred CchhHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 101 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 101 PHiyaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
.|+... ....+.+...+...+|||.|++|+|||+.++.+.+.+
T Consensus 18 ~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 18 EHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 565543 3556677777777899999999999999999986643
No 212
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=83.76 E-value=18 Score=39.70 Aligned_cols=36 Identities=31% Similarity=0.379 Sum_probs=23.0
Q ss_pred hhhHHHHHHhhccccchhhhhhhcccCCC--CCCCCChH
Q 001592 961 NHLTKEFEQRRQNFDDDAKALIEIKTTQP--ASTVHPDV 997 (1048)
Q Consensus 961 ~~l~~efe~r~q~f~~~a~~~~e~~~~~~--~~~~~~~~ 997 (1048)
..+.+|-|-|+.. +-..++|--.+..|+ .+.||+.|
T Consensus 169 ekynkeveerkrl-e~e~k~lq~k~~~q~~~qstmsHRd 206 (307)
T PF10481_consen 169 EKYNKEVEERKRL-EAEVKALQAKKASQAAPQSTMSHRD 206 (307)
T ss_pred HHHHHHHHHHhhH-HHHHHHHhcccCCCcCccccccHHH
Confidence 4566777777765 777777765555565 44566544
No 213
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=83.69 E-value=1.2 Score=45.86 Aligned_cols=28 Identities=36% Similarity=0.385 Sum_probs=24.4
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 121 QSIIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
..|.|+|.||||||+.++.++..|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3688999999999999999999887654
No 214
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.68 E-value=1.3 Score=53.42 Aligned_cols=52 Identities=25% Similarity=0.438 Sum_probs=36.3
Q ss_pred HHHhhcCCC----CCchhHHHHHHHHHhhh-CCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 91 TAYRQKVMD----SPHVYAIADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 91 ~~y~~~~~~----~PHiyaiA~~Ay~~m~~-~~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
+.||.+... .+|+-. ..+.+.. .+-++++|++|+.|.|||+.++.+.+.|-.
T Consensus 6 ~kyRP~~~~divGq~~i~~----~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKK----LIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHCCCCHHHccCcHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 455554433 477733 3444444 445688999999999999999999887643
No 215
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=83.65 E-value=0.87 Score=50.80 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001592 121 QSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~yL 144 (1048)
.-|+|+|+||+||||++=-+++-=
T Consensus 146 vGVLItG~SG~GKSElALeLi~rg 169 (308)
T COG1493 146 VGVLITGPSGAGKSELALELIKRG 169 (308)
T ss_pred eEEEEECCCCCCHhHHHHHHHHhc
Confidence 679999999999999987776653
No 216
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=83.64 E-value=0.77 Score=52.85 Aligned_cols=27 Identities=41% Similarity=0.525 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.||||||||+..+.|+..+
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 356899999999999999999887654
No 217
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=83.59 E-value=0.87 Score=48.78 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|+||||||+..|.++-.+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 357899999999999999998886543
No 218
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=83.57 E-value=0.9 Score=49.05 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|+||||||+..+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 357899999999999999999988665
No 219
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=83.49 E-value=0.83 Score=52.59 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|+||||||+..|.|+..+
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 457899999999999999999987654
No 220
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.46 E-value=0.84 Score=54.44 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=27.7
Q ss_pred HHHHHhhhCCCceE-EEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 109 TAYNEMMGDGVNQS-IIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 109 ~Ay~~m~~~~~~Qs-IiisGESGaGKTet~k~il~yL~~~ 147 (1048)
..++++.. ++|- |+++|.+|||||+|..-++++|-.-
T Consensus 248 ~~~~~~~~--~p~GliLvTGPTGSGKTTTLY~~L~~ln~~ 285 (500)
T COG2804 248 ARLLRLLN--RPQGLILVTGPTGSGKTTTLYAALSELNTP 285 (500)
T ss_pred HHHHHHHh--CCCeEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence 34555543 3554 5669999999999999999998653
No 221
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=83.46 E-value=1.3 Score=49.99 Aligned_cols=28 Identities=29% Similarity=0.273 Sum_probs=25.1
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 117 DGVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 117 ~~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
.+.+=.|+|+|.||||||+.+..+..+|
T Consensus 89 ~~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 89 SKEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567799999999999999999999888
No 222
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=83.44 E-value=13 Score=32.26 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001592 832 AELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASL 887 (1048)
Q Consensus 832 ~eLq~r~~e~e~~l~eleeE~~~L~~~l~~~e~~~~e~e~k~~~~ee~~qk~~~~L 887 (1048)
..|+.++..+-....+++.||..|+.+......+...+.+++.......+.++..|
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RL 58 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRL 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666666666777777877777777777777776666666555555555444
No 223
>PRK13768 GTPase; Provisional
Probab=83.42 E-value=1 Score=49.83 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=24.3
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 122 SIIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
.|+|+|.+|+|||+.+..+..+|+..+
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g 30 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQG 30 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcC
Confidence 589999999999999999999997754
No 224
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=83.40 E-value=0.82 Score=47.00 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=20.2
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~y 143 (1048)
.--.|.|+|.||+|||+..|.+..-
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhc
Confidence 3468999999999999988776443
No 225
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=83.40 E-value=1.4 Score=34.80 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.7
Q ss_pred eeeecCCeEEEEecCCcEEEEeCCC
Q 001592 2 IQSTSGDEAFVLLSNGNVVKVSTGE 26 (1048)
Q Consensus 2 i~~~~~~~~~v~~~~g~~~~v~~~~ 26 (1048)
|++++|++++|.+.+|++++|+.+|
T Consensus 18 I~~~~g~~vtV~~~~G~~~tv~~dd 42 (42)
T PF02736_consen 18 IIEEEGDKVTVKTEDGKEVTVKKDD 42 (42)
T ss_dssp EEEEESSEEEEEETTTEEEEEEGGG
T ss_pred EEEEcCCEEEEEECCCCEEEeCCCC
Confidence 7799999999999999999998764
No 226
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=83.37 E-value=1.4 Score=46.22 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=29.3
Q ss_pred HHhhh-CCCceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 112 NEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 112 ~~m~~-~~~~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
..+.. .+-++++++.|++|.|||+.++.+.+.|..-
T Consensus 5 ~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 5 KRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 34443 4567999999999999999999999988653
No 227
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=83.32 E-value=0.9 Score=48.16 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~y 143 (1048)
..+.+.|.|++|||||+..+.++-.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 5688999999999999998888643
No 228
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=83.31 E-value=0.91 Score=48.44 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..+.+.-.
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45788999999999999988888654
No 229
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=83.31 E-value=1.2 Score=43.31 Aligned_cols=26 Identities=46% Similarity=0.737 Sum_probs=23.9
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 123 IIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
|+++|.+|+|||..+..+.++|+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g 27 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKG 27 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 89999999999999999999998743
No 230
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=83.27 E-value=2.1 Score=54.34 Aligned_cols=42 Identities=31% Similarity=0.371 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhhh-CCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 104 YAIADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 104 yaiA~~Ay~~m~~-~~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
-.|+. ++...+. ...+.++.|+|.+|.|||.+++.+++-|..
T Consensus 765 eeLas-fL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 765 KEVHG-FLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred HHHHH-HHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34443 3344443 444566789999999999999999998864
No 231
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=83.21 E-value=1 Score=46.98 Aligned_cols=48 Identities=29% Similarity=0.419 Sum_probs=30.6
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHccCCCchHHHHHHhh-----hHHHHHhhcC
Q 001592 123 IIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQT-----NHILEAFGNA 171 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL~~~~~~~~~i~~~il~s-----n~iLEAFGNA 171 (1048)
|.|+|-+|||||+.++.+.++ -..--..+.+-.++++. ..|.+.||..
T Consensus 2 i~itG~~gsGKst~~~~l~~~-g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~ 54 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKEL-GIPVIDADKIAHEVYEPGGPALQAIVEAFGPD 54 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHC-CCCEEecCHHHHhhhhcccHHHHHHHHHcCcc
Confidence 789999999999999998772 11000123555555543 3466677753
No 232
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=83.21 E-value=1.3 Score=50.84 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=27.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
+..+.|.+.|.+|||||+++..+..++...+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g 142 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG 142 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 3578999999999999999999999887644
No 233
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.21 E-value=0.91 Score=49.47 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|++|||||+..|.++-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45788999999999999998888654
No 234
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.20 E-value=0.96 Score=46.99 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999998886543
No 235
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=83.16 E-value=0.99 Score=50.82 Aligned_cols=28 Identities=36% Similarity=0.444 Sum_probs=24.9
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHccC
Q 001592 122 SIIISGESGAGKTETAKFAMQYLAALGG 149 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL~~~~~ 149 (1048)
-|+|.|++|+|||+.++.+-+++...+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 5999999999999999999999887653
No 236
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=83.16 E-value=0.75 Score=53.17 Aligned_cols=30 Identities=23% Similarity=0.374 Sum_probs=25.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
+..|++=|-||||||||+.-..+++-+.+-
T Consensus 311 ~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 311 RRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 567999999999999999999888876543
No 237
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=83.11 E-value=0.61 Score=57.12 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=24.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
.+.+.|.|.|+||||||+..|+++.++.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4679999999999999999999987753
No 238
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=83.08 E-value=0.86 Score=47.69 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.0
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001592 122 SIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL 144 (1048)
-|||+|.||||||+.++.+++..
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999888887763
No 239
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=83.08 E-value=1.6 Score=46.28 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=31.2
Q ss_pred HHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 109 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 109 ~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
.|++.++. ..++.++|.|..|+|||++.+.+.+++..-+
T Consensus 8 ~a~~~~l~-~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g 46 (196)
T PF13604_consen 8 EAVRAILT-SGDRVSVLQGPAGTGKTTLLKALAEALEAAG 46 (196)
T ss_dssp HHHHHHHH-CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHh-cCCeEEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence 35555554 4578899999999999999999999888753
No 240
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.06 E-value=0.67 Score=50.23 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|+||||||+..|.+...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988886554
No 241
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=83.01 E-value=0.89 Score=52.26 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+-|-||||||||+..+.|+..+
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 456789999999999999999998765
No 242
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=83.00 E-value=2.8 Score=52.75 Aligned_cols=53 Identities=21% Similarity=0.378 Sum_probs=38.1
Q ss_pred HHHHhhcCCC----CCchhHHHHHHHHHhhhC-CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 90 ITAYRQKVMD----SPHVYAIADTAYNEMMGD-GVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 90 ~~~y~~~~~~----~PHiyaiA~~Ay~~m~~~-~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
.+.|+-+... ..||-. .++++... +..+++||+|..|.|||++++++.+.|-+
T Consensus 7 arKYRPqtFdEVIGQe~Vv~----~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 7 ARKWRPKDFASLVGQEHVVR----ALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred HHHhCCCcHHHHcCcHHHHH----HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3556654433 467654 34444444 55889999999999999999999998864
No 243
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.95 E-value=1.3 Score=53.96 Aligned_cols=45 Identities=24% Similarity=0.340 Sum_probs=33.6
Q ss_pred CCchhHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 100 SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 100 ~PHiyaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
..|+...-..++. ..+-.++++++|++|+|||++++.+.+.|-..
T Consensus 19 q~~v~~~L~~~i~---~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 19 QEHVKEVLLAALR---QGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3666544444333 34567899999999999999999999988653
No 244
>PRK02496 adk adenylate kinase; Provisional
Probab=82.95 E-value=0.97 Score=47.10 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL 144 (1048)
|+|.|.+|||||+.++.+-+.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998766
No 245
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=82.89 E-value=1.2 Score=47.42 Aligned_cols=48 Identities=23% Similarity=0.389 Sum_probs=32.3
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHccCCCchHHHHHHhh-----hHHHHHhhc
Q 001592 122 SIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQT-----NHILEAFGN 170 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL~~~~~~~~~i~~~il~s-----n~iLEAFGN 170 (1048)
.|.|+|.+|||||+.++++..+=+.+ -+.+.+...+++. ..|.+.||.
T Consensus 3 ~igitG~igsGKst~~~~l~~~g~~v-id~D~i~~~~~~~~~~~~~~l~~~fg~ 55 (200)
T PRK14734 3 RIGLTGGIGSGKSTVADLLSSEGFLI-VDADQVARDIVEPGQPALAELAEAFGD 55 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCeE-EeCcHHHHHHHhcCCHHHHHHHHHhCc
Confidence 58999999999999998887531110 0234566666653 457778886
No 246
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=82.86 E-value=2.3 Score=47.62 Aligned_cols=31 Identities=29% Similarity=0.342 Sum_probs=25.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
+..+.|++.|.+|+|||+++-.+..+|+..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g 100 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQG 100 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 3467999999999999999988888886554
No 247
>PRK00023 cmk cytidylate kinase; Provisional
Probab=82.86 E-value=0.97 Score=49.10 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=23.1
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
+-.|.|+|.+|||||+.++.+.+.|-
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998873
No 248
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=82.80 E-value=1 Score=47.66 Aligned_cols=50 Identities=28% Similarity=0.426 Sum_probs=32.6
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHccCCCchHHHHHHhh-----hHHHHHhhcC
Q 001592 121 QSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQT-----NHILEAFGNA 171 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~yL~~~~~~~~~i~~~il~s-----n~iLEAFGNA 171 (1048)
.-|.|+|-+|||||+.++++-++=..+ -..+.+-.+++.. .-|.+.||..
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~~g~~~-i~~D~~~~~~~~~~~~~~~~i~~~fg~~ 57 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAELGAPV-IDADAIAHEVVEPGGPALQAIVEAFGPE 57 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHHcCCEE-EEecHHHHHHhhccHHHHHHHHHHhCHH
Confidence 469999999999999999887631110 0123565566542 3467788863
No 249
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=82.77 E-value=0.91 Score=48.49 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..+++.-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 35688999999999999998887543
No 250
>PRK06620 hypothetical protein; Validated
Probab=82.76 E-value=1.6 Score=46.98 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCChhhHHHHHHH
Q 001592 121 QSIIISGESGAGKTETAKFAMQ 142 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~ 142 (1048)
.+++|.|++|+|||+.++.+-+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~ 66 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQN 66 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHh
Confidence 7899999999999998886433
No 251
>PF13173 AAA_14: AAA domain
Probab=82.73 E-value=1.2 Score=43.73 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=23.6
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
++.++|.|..|+|||+.++.+++++.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998876
No 252
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=82.69 E-value=1.7 Score=50.52 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=31.8
Q ss_pred HHHHHHHhhh-CCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 107 ADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 107 A~~Ay~~m~~-~~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
|...+..+.. .+-+++++|+|+.|.|||+.++.+.++|..
T Consensus 31 a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 31 AEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 3445555544 455899999999999999999999998865
No 253
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=82.67 E-value=1.8 Score=45.26 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=24.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
...+.|+|.|.+|.|||..+..+.+.++.-
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~ 74 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK 74 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC
Confidence 356889999999999999999999888773
No 254
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=82.66 E-value=0.93 Score=50.74 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=19.2
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL 144 (1048)
|.|+|.||||||+.++.+...|
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6789999999999998887665
No 255
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=82.60 E-value=1 Score=48.37 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQ 142 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~ 142 (1048)
...+.+.|.|+||||||+..+.+.-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999999998887753
No 256
>PLN03025 replication factor C subunit; Provisional
Probab=82.60 E-value=1.7 Score=49.68 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=28.6
Q ss_pred HHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 111 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 111 y~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
.+.+...+.-..++++|++|+|||++++.+.+.|.
T Consensus 25 L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 25 LQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 45555666666799999999999999999988874
No 257
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=82.52 E-value=1.6 Score=53.63 Aligned_cols=30 Identities=30% Similarity=0.465 Sum_probs=25.8
Q ss_pred hhCCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 115 MGDGVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 115 ~~~~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
.....++.|+|+||+|+|||..++.+.++.
T Consensus 81 l~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 81 LCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345668999999999999999999998764
No 258
>PLN02796 D-glycerate 3-kinase
Probab=82.48 E-value=0.97 Score=51.99 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=20.7
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHH
Q 001592 122 SIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL~ 145 (1048)
-|-|+|.||||||+.++.|...|.
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Confidence 478899999999999998877764
No 259
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=82.45 E-value=0.9 Score=56.17 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
+=-|+|+|..|||||+|...+|+++.
T Consensus 316 ~Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 316 QGMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhC
Confidence 34688999999999999988888873
No 260
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=82.40 E-value=1.6 Score=51.87 Aligned_cols=61 Identities=21% Similarity=0.221 Sum_probs=38.3
Q ss_pred CCCHHHHHHHhhcC-CC-CCchhHHHHHHHHHhhhCC-----------CceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 84 IYGNKFITAYRQKV-MD-SPHVYAIADTAYNEMMGDG-----------VNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 84 ly~~~~~~~y~~~~-~~-~PHiyaiA~~Ay~~m~~~~-----------~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
+.++..+..|-+.. .. .+=+=+++..+|.++.+-. ....|+|.|++|+|||+.++.+-+.+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 55777776665432 12 2333345555554433321 24689999999999999999886554
No 261
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.38 E-value=1 Score=48.99 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 356889999999999999999886543
No 262
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=82.37 E-value=1.1 Score=45.96 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.2
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 121 QSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
+.|+|+|-+|||||+.++.+-+.|-
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999987763
No 263
>PRK09087 hypothetical protein; Validated
Probab=82.37 E-value=1.6 Score=47.36 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=20.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~y 143 (1048)
.+..++|.|+||+|||+.+..+...
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh
Confidence 4667999999999999988866543
No 264
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.31 E-value=1.6 Score=53.43 Aligned_cols=53 Identities=23% Similarity=0.392 Sum_probs=37.1
Q ss_pred HHHhhcCCC----CCchhHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 91 TAYRQKVMD----SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 91 ~~y~~~~~~----~PHiyaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
+.|+-+... .+|+-..-..++. ..+-++++|++|++|.|||+.++.+.+.|-.
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~---~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALE---QQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHH---cCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 455544332 4776654333332 2466789999999999999999999998854
No 265
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=82.22 E-value=0.94 Score=57.20 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
...|.|-|.|+||||||+.+|+++.++.
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~ 524 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYK 524 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3468999999999999999999987653
No 266
>PRK10646 ADP-binding protein; Provisional
Probab=82.20 E-value=2.4 Score=43.19 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL 144 (1048)
.-.|++.|+-|||||+-+|-+++.|
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3478899999999999999998887
No 267
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=82.20 E-value=1.3 Score=52.85 Aligned_cols=64 Identities=30% Similarity=0.458 Sum_probs=39.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHccCCC------chHHHHHHhhhHHHHHhhcCcC-CCCCCCCcccceE
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLAALGGGS------EGIEYEILQTNHILEAFGNAKT-SRNDNSSRFGKLI 186 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~------~~i~~~il~sn~iLEAFGNAkT-~~N~NSSRfGk~i 186 (1048)
..|=+|+|+||||+||-..++.|=++ .....+. ..|...+++| |-||..|- -.-.+.+|-|+|-
T Consensus 162 ~s~a~VLI~GESGtGKElvAr~IH~~-S~R~~~PFVavNcaAip~~l~ES----ELFGhekGAFTGA~~~r~G~fE 232 (464)
T COG2204 162 PSDASVLITGESGTGKELVARAIHQA-SPRAKGPFIAVNCAAIPENLLES----ELFGHEKGAFTGAITRRIGRFE 232 (464)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHhh-CcccCCCceeeecccCCHHHHHH----HhhcccccCcCCcccccCccee
Confidence 45678999999999999877766443 2221110 1233333332 45998882 2235578999986
No 268
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=82.19 E-value=1.1 Score=48.85 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..+.|.-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35788999999999999998888643
No 269
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=82.17 E-value=0.83 Score=48.68 Aligned_cols=44 Identities=32% Similarity=0.456 Sum_probs=33.2
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHccCCCchHHHHHHhhhHHHHHhh
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFG 169 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL~~~~~~~~~i~~~il~sn~iLEAFG 169 (1048)
+=.|+|.|.=|+|||+.++.+-++|-+ .+..++..=||+|+-|=
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~------~~~~E~vednp~L~~FY 47 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGF------KVFYELVEDNPFLDLFY 47 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCC------ceeeecccCChHHHHHH
Confidence 458999999999999999999888752 23344455567777664
No 270
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=82.13 E-value=0.96 Score=48.16 Aligned_cols=34 Identities=32% Similarity=0.498 Sum_probs=26.9
Q ss_pred HHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 111 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 111 y~~m~~~~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
.......+.+++|+|.|..|+|||...+.+++.+
T Consensus 11 l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 11 LKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 3444555678999999999999999999998877
No 271
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=82.07 E-value=1.1 Score=48.95 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..+.|.-.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998887644
No 272
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=82.05 E-value=1.1 Score=47.64 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|++|||||+..+.+.-.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998888643
No 273
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.00 E-value=1.1 Score=48.00 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
.. +.+.|.|++|||||+..+.++-.+
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 45 899999999999999988886443
No 274
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=81.95 E-value=1.2 Score=46.06 Aligned_cols=27 Identities=37% Similarity=0.351 Sum_probs=22.4
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 122 SIIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
+++|+|++|+|||..+-.++...+.-+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g 27 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARG 27 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 489999999999998888877766543
No 275
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=81.90 E-value=1.2 Score=45.93 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|++|||||+..+.++-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457889999999999999999887654
No 276
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.87 E-value=1.1 Score=48.06 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQ 142 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~ 142 (1048)
...+.+.|.|++|||||+..++|.-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567899999999999999998853
No 277
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=81.86 E-value=2.5 Score=52.32 Aligned_cols=44 Identities=32% Similarity=0.378 Sum_probs=34.2
Q ss_pred CchhHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 101 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 101 PHiyaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
|-|.++=.++|.. +.++.-.|+|+|.||||||+.++.+...|-.
T Consensus 375 peV~~iL~~~~~~--r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 375 PEVVAELRRTYPP--RHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred HHHHHHHHHHhcc--ccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 6666666666544 3445569999999999999999999888865
No 278
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=81.83 E-value=1.1 Score=48.87 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..|.+.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35689999999999999998887543
No 279
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=81.80 E-value=1 Score=48.80 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..|.+.-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 35688999999999999998888643
No 280
>PRK13947 shikimate kinase; Provisional
Probab=81.78 E-value=1.2 Score=45.64 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.4
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001592 122 SIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL 144 (1048)
.|+|.|-+|||||+.++.+-+-|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 49999999999999999887655
No 281
>PRK14530 adenylate kinase; Provisional
Probab=81.77 E-value=1.1 Score=48.05 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.5
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHH
Q 001592 122 SIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL~ 145 (1048)
-|+|.|.+|||||+.++.+.+.+-
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999987763
No 282
>PRK05439 pantothenate kinase; Provisional
Probab=81.77 E-value=2.2 Score=48.55 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=25.3
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 117 DGVNQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 117 ~~~~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
.+.+--|-|+|.+|||||+.++.+...|...
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~ 113 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRW 113 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4556678899999999999999888776543
No 283
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.76 E-value=1.1 Score=47.59 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|++|||||+..+.+.-.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35678899999999999999988643
No 284
>PF13479 AAA_24: AAA domain
Probab=81.74 E-value=0.95 Score=48.67 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=18.7
Q ss_pred CceEEEEcCCCCCChhhHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFA 140 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~i 140 (1048)
++..|+|.|+||+|||..++.+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 5788999999999999776554
No 285
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=81.72 E-value=1.1 Score=48.55 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
..+.+.|.|+||||||+..|.+.-.+
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999887554
No 286
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=81.71 E-value=1.1 Score=47.85 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQ 142 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~ 142 (1048)
...+.+.|.|+||||||+..|.|.-
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999888854
No 287
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=81.67 E-value=1.8 Score=48.02 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=30.4
Q ss_pred CCchhHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 100 SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 100 ~PHiyaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
+|++=.+-+++...+.. +..|+|.|++|+|||+.++.+-+.
T Consensus 4 t~~~~~l~~~~l~~l~~---g~~vLL~G~~GtGKT~lA~~la~~ 44 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKS---GYPVHLRGPAGTGKTTLAMHVARK 44 (262)
T ss_pred CHHHHHHHHHHHHHHhc---CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 35555666666655543 568999999999999999887653
No 288
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=81.66 E-value=1.1 Score=47.45 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=21.1
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 122 SIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
.++|.|.||||||...+.++..|+..
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~~ 65 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLALT 65 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHHH
Confidence 59999999999999999988887763
No 289
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=81.64 E-value=0.97 Score=48.96 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=17.1
Q ss_pred CceEEEEcCCCCCChhhHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFA 140 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~i 140 (1048)
+.-.+.|.|+||||||+...++
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLnii 51 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLL 51 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3457899999999999865443
No 290
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=81.63 E-value=1.2 Score=47.58 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..|.+.-.
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35788999999999999988888644
No 291
>PLN02348 phosphoribulokinase
Probab=81.61 E-value=1.9 Score=50.46 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
+..--|-|+|.||||||+.++.|.+.|-.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 33445558999999999999999888743
No 292
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=81.61 E-value=1.1 Score=47.48 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..+.+.-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35688999999999999999888543
No 293
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=81.55 E-value=1.9 Score=49.26 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=30.9
Q ss_pred chhHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 102 HVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 102 HiyaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
.+..+.+.-+.....-+.+..|+|+|.+|||||+.++.+-+.|
T Consensus 115 ~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 115 RVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred HHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 3444444434444445677899999999999999999987655
No 294
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=81.52 E-value=1.2 Score=47.53 Aligned_cols=26 Identities=19% Similarity=0.521 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..+.++..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45788999999999999998887643
No 295
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=81.46 E-value=1.2 Score=48.03 Aligned_cols=24 Identities=46% Similarity=0.573 Sum_probs=21.2
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHH
Q 001592 122 SIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL~ 145 (1048)
.|.|.|.||||||+.++.+...|-
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987653
No 296
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=81.46 E-value=1.2 Score=46.45 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=20.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAM 141 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il 141 (1048)
....-+.|.|+||||||+..+.++
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 345778999999999999998774
No 297
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=81.46 E-value=1.2 Score=47.19 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=21.7
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 117 DGVNQSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 117 ~~~~QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
...+..|||.|.+|||||+....++..+.
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~ 40 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG 40 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc
Confidence 46789999999999999999887766553
No 298
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=81.45 E-value=1.1 Score=50.66 Aligned_cols=24 Identities=42% Similarity=0.602 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~y 143 (1048)
.-.|+|.|+||+||||++=-+++.
T Consensus 146 G~GvLi~G~SG~GKSelALeLi~r 169 (308)
T PRK05428 146 GIGVLITGESGIGKSETALELIKR 169 (308)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 368899999999999999877775
No 299
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.37 E-value=1.2 Score=45.97 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..|.+.-.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988877543
No 300
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=81.34 E-value=1.5 Score=52.42 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=27.0
Q ss_pred chhHHHHHHHHHhhhC-----CCceEEEEcCCCCCChhhHHH
Q 001592 102 HVYAIADTAYNEMMGD-----GVNQSIIISGESGAGKTETAK 138 (1048)
Q Consensus 102 HiyaiA~~Ay~~m~~~-----~~~QsIiisGESGaGKTet~k 138 (1048)
||=.-.+.-+...+.+ ...+.|.|.|+||||||+..+
T Consensus 9 hi~r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 9 YVKRKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred eechHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 4434445555555543 578999999999999999988
No 301
>PRK13695 putative NTPase; Provisional
Probab=81.33 E-value=1.3 Score=45.90 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.5
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL~~ 146 (1048)
|+|+|++|+|||+..+.+...+..
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999998887754
No 302
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=81.31 E-value=0.94 Score=56.18 Aligned_cols=29 Identities=21% Similarity=0.488 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
...|.+.|.|+||||||+..|+++..+.-
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 46799999999999999999999887643
No 303
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=81.29 E-value=1.2 Score=48.85 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..|.+.-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45788999999999999998887643
No 304
>PRK10908 cell division protein FtsE; Provisional
Probab=81.24 E-value=1.2 Score=47.88 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..+.|.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45788999999999999999887643
No 305
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=81.18 E-value=1.2 Score=47.73 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..+.++-.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999998888543
No 306
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=81.15 E-value=9.4 Score=45.50 Aligned_cols=55 Identities=13% Similarity=0.183 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001592 842 EATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAARKSLAS 900 (1048)
Q Consensus 842 e~~l~eleeE~~~L~~~l~~~e~~~~e~e~k~~~~ee~~qk~~~~Lq~~La~~kk~L~~ 900 (1048)
+....+++++++.|+.+++++.++..+++.++++++++. ..|+.++++++.+++.
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~----~~Lk~Ql~a~~~~~~~ 129 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDN----AALAEQVKALGANPVT 129 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH----HHHHHHHHhhhcCCCC
Confidence 334445555556666666666666666667777666665 4555555666666553
No 307
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=81.09 E-value=1.2 Score=48.52 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..|.|+-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999998888643
No 308
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=81.06 E-value=1.2 Score=48.15 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999886544
No 309
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=80.98 E-value=1.4 Score=46.82 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
++.|++.|.+|+|||+|+-.+-.|+..-
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 4679999999999999987776666544
No 310
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=80.92 E-value=1.5 Score=46.06 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=23.5
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
..-|+|.|-.|||||+.++.+-++|..
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 357999999999999999999888754
No 311
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=80.92 E-value=1.3 Score=47.93 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999988886543
No 312
>PRK04195 replication factor C large subunit; Provisional
Probab=80.85 E-value=1.6 Score=52.99 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
.....++|+|++|+|||+.++.+.+.+
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 336799999999999999999887765
No 313
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=80.82 E-value=1.3 Score=47.59 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|++|||||+..+.|.-.
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998888543
No 314
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.73 E-value=1.3 Score=49.46 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..+.+.-.
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999887644
No 315
>PLN02318 phosphoribulokinase/uridine kinase
Probab=80.73 E-value=1.9 Score=52.90 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=30.9
Q ss_pred CchhHHHHHHHHHhhhCCC-ceEEEEcCCCCCChhhHHHHHHHH
Q 001592 101 PHVYAIADTAYNEMMGDGV-NQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 101 PHiyaiA~~Ay~~m~~~~~-~QsIiisGESGaGKTet~k~il~y 143 (1048)
-|=|-++-+|-+-+..... .-.|-|.|.||||||+.++.|...
T Consensus 45 d~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 45 EKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred ccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 4556677777766655332 346677999999999999888654
No 316
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=80.73 E-value=2.8 Score=48.23 Aligned_cols=32 Identities=28% Similarity=0.278 Sum_probs=28.3
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 117 DGVNQSIIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 117 ~~~~QsIiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
.+..-.|-|+|.+|||||+.+..+..+|...+
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g 84 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQG 84 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 67788999999999999999999999987643
No 317
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=80.72 E-value=1.3 Score=47.94 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|++|||||+..|.+.-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988888643
No 318
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.71 E-value=1.9 Score=53.55 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=34.0
Q ss_pred CCchhHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 100 SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 100 ~PHiyaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
..|+...-..++. ..+..+++||+|++|.|||+.++.+.++|-..
T Consensus 21 q~~~~~~L~~~i~---~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 21 QEHVVQTLRNAIA---EGRVAHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred CHHHHHHHHHHHH---hCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4666554333332 34568999999999999999999999998653
No 319
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=80.70 E-value=6 Score=50.18 Aligned_cols=79 Identities=19% Similarity=0.164 Sum_probs=48.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001592 822 EQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAARKSLAS 900 (1048)
Q Consensus 822 ee~~~l~~~l~eLq~r~~e~e~~l~eleeE~~~L~~~l~~~e~~~~e~e~k~~~~ee~~qk~~~~Lq~~La~~kk~L~~ 900 (1048)
++...+++..+.|..|.+++...-+.+.+..+.+...+....-...++|.+|+++-+..+.++..++.+++.++..+..
T Consensus 586 e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 586 EERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555555555555544333466777777777667777777888888887777764
No 320
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.67 E-value=1.8 Score=53.56 Aligned_cols=53 Identities=26% Similarity=0.386 Sum_probs=38.6
Q ss_pred HHHHhhcCCC----CCchhHHHHHHHHHhhhC-CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 90 ITAYRQKVMD----SPHVYAIADTAYNEMMGD-GVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 90 ~~~y~~~~~~----~PHiyaiA~~Ay~~m~~~-~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
.+.|+-.... .+|+-.+-. ++... +..+++|++|+.|.|||++++++.++|-.
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~L~----~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAILS----RAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHH----HHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 3556655433 477754444 43444 45899999999999999999999998864
No 321
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=80.67 E-value=1.3 Score=49.01 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|+||||||+..+.++-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999999887544
No 322
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=80.64 E-value=1.9 Score=53.81 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=28.1
Q ss_pred HHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 112 NEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 112 ~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
........++.|+|.|++|+|||+.++.+......
T Consensus 167 ~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~ 201 (615)
T TIGR02903 167 LAKVASPFPQHIILYGPPGVGKTTAARLALEEAKK 201 (615)
T ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 34445567889999999999999999999877543
No 323
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=80.64 E-value=1.5 Score=47.82 Aligned_cols=40 Identities=30% Similarity=0.374 Sum_probs=30.4
Q ss_pred HHHHHHHHhhh-CCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 106 IADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 106 iA~~Ay~~m~~-~~~~QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
+.+++|..|.. -..+.+-.+.|++|+|||||.|.+=+.|.
T Consensus 17 lt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~lG 57 (231)
T PF12774_consen 17 LTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARALG 57 (231)
T ss_dssp HHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHhC
Confidence 45677776654 24568889999999999999988766544
No 324
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=80.63 E-value=1.3 Score=48.09 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..+.+.-.
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999998888643
No 325
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=80.61 E-value=1.3 Score=48.05 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=18.5
Q ss_pred CCceEEEEcCCCCCChhhHHH
Q 001592 118 GVNQSIIISGESGAGKTETAK 138 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k 138 (1048)
...+.+.|.|+||||||+...
T Consensus 19 ~~Ge~~~l~G~sGsGKSTL~~ 39 (226)
T cd03270 19 PRNKLVVITGVSGSGKSSLAF 39 (226)
T ss_pred CCCcEEEEEcCCCCCHHHHHH
Confidence 467899999999999999974
No 326
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=80.58 E-value=1.3 Score=47.15 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|++|||||+..|.++-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999998887543
No 327
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=80.55 E-value=1.5 Score=46.88 Aligned_cols=50 Identities=24% Similarity=0.440 Sum_probs=35.8
Q ss_pred EEEEcCCCCCChhhHHHHHHHH-HHHccCCCchHHHHHHhhh-----HHHHHhhcCcC
Q 001592 122 SIIISGESGAGKTETAKFAMQY-LAALGGGSEGIEYEILQTN-----HILEAFGNAKT 173 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~y-L~~~~~~~~~i~~~il~sn-----~iLEAFGNAkT 173 (1048)
.|-|+|-.|||||+.++++-++ +..+. .+.+-.++++-+ .|-+.||.--+
T Consensus 4 iIglTG~igsGKStva~~~~~~G~~vid--aD~v~r~~~~~~~~~~~~i~~~fG~~i~ 59 (201)
T COG0237 4 IIGLTGGIGSGKSTVAKILAELGFPVID--ADDVAREVVEPGGEALQEIAERFGLEIL 59 (201)
T ss_pred EEEEecCCCCCHHHHHHHHHHcCCeEEE--ccHHHHHHHhccchHHHHHHHHcCCccc
Confidence 4778999999999999888774 22222 235677777655 88899996433
No 328
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=80.54 E-value=1.4 Score=49.35 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 105 AIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 105 aiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
..++.....+...+.-++++|.|.+|||||+..+.+...+.
T Consensus 96 ~~~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 96 GAADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred CcHHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 45666666666665568999999999999999998877664
No 329
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=80.49 E-value=0.82 Score=45.45 Aligned_cols=26 Identities=31% Similarity=0.583 Sum_probs=20.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
..+..|+|+||+|+||+..++.+-.+
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 45678999999999999887766543
No 330
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=80.44 E-value=1.3 Score=48.04 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|.+|||||+..|.+.-.+
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999988886543
No 331
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=80.44 E-value=1.3 Score=48.72 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|++|||||+..|.+.-.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45688999999999999999988754
No 332
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=80.35 E-value=1.4 Score=46.50 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|++|||||+..+.++--
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 35788999999999999998888654
No 333
>PRK01184 hypothetical protein; Provisional
Probab=80.32 E-value=1.2 Score=46.33 Aligned_cols=19 Identities=42% Similarity=0.532 Sum_probs=16.4
Q ss_pred EEEEcCCCCCChhhHHHHH
Q 001592 122 SIIISGESGAGKTETAKFA 140 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~i 140 (1048)
-|+|+|.+|||||+.++++
T Consensus 3 ~i~l~G~~GsGKsT~a~~~ 21 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSKIA 21 (184)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4889999999999998843
No 334
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=80.32 E-value=1.3 Score=48.64 Aligned_cols=26 Identities=35% Similarity=0.359 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
..+.+.|.|++|||||+..|+|.-.+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999886543
No 335
>PRK13946 shikimate kinase; Provisional
Probab=80.31 E-value=1.4 Score=46.11 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
.+..|++.|-+|||||+.++.+-+.|
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999988776
No 336
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=80.29 E-value=22 Score=35.90 Aligned_cols=15 Identities=13% Similarity=0.366 Sum_probs=10.0
Q ss_pred hhhhHHHHHHhhccc
Q 001592 960 VNHLTKEFEQRRQNF 974 (1048)
Q Consensus 960 v~~l~~efe~r~q~f 974 (1048)
++.-|.+|+++.+.+
T Consensus 106 ~d~~ae~~eRkv~~l 120 (143)
T PF12718_consen 106 ADVKAEHFERKVKAL 120 (143)
T ss_pred HHHHhHHHHHHHHHH
Confidence 456677777776653
No 337
>PRK06526 transposase; Provisional
Probab=80.29 E-value=1.5 Score=48.50 Aligned_cols=30 Identities=23% Similarity=0.241 Sum_probs=25.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
..+.|+|.|.+|+|||..+..+...++..+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g 126 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAG 126 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCC
Confidence 456799999999999999999988877643
No 338
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=80.22 E-value=1.3 Score=46.19 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
.....+.|.|+||||||+..|.+.-.+.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4567899999999999999998876543
No 339
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=80.20 E-value=1.4 Score=47.23 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=17.7
Q ss_pred CceEEEEcCCCCCChhhHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFA 140 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~i 140 (1048)
+-..++|.|.||||||+..+-+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4578899999999999875543
No 340
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=80.10 E-value=22 Score=42.34 Aligned_cols=84 Identities=20% Similarity=0.266 Sum_probs=57.7
Q ss_pred ccCchHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 001592 817 KDVPQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEY----EAKMKSMEEMWQKQMASLQMSLA 892 (1048)
Q Consensus 817 ~~~leee~~~l~~~l~eLq~r~~e~e~~l~eleeE~~~L~~~l~~~e~~~~e~----e~k~~~~ee~~qk~~~~Lq~~La 892 (1048)
-+...+-++-+-..+.+++.++.++.++.+.+.+||+.|+++......++... ..++.+..+.++.+...++..+.
T Consensus 54 gDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~ 133 (472)
T TIGR03752 54 GDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLID 133 (472)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777778888888888888888888888888777666665443 33444444555556666777777
Q ss_pred HHHHHhhc
Q 001592 893 AARKSLAS 900 (1048)
Q Consensus 893 ~~kk~L~~ 900 (1048)
.+..+|..
T Consensus 134 ~l~~~l~~ 141 (472)
T TIGR03752 134 QLQRRLAG 141 (472)
T ss_pred HHHHHHhh
Confidence 77777743
No 341
>PRK00625 shikimate kinase; Provisional
Probab=80.09 E-value=1.4 Score=45.83 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.8
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001592 122 SIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL 144 (1048)
-|+|.|-.|||||+.++.+-+.|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999997765
No 342
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.06 E-value=1.3 Score=49.90 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999999887544
No 343
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=80.01 E-value=1.4 Score=47.49 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|+||||||+..|.+...+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 467899999999999999999887554
No 344
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.97 E-value=1.4 Score=47.84 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..+.+.-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999998888543
No 345
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.97 E-value=2.1 Score=52.15 Aligned_cols=53 Identities=17% Similarity=0.368 Sum_probs=39.1
Q ss_pred HHHHhhcCCC----CCchhHHHHHHHHHhh-hCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 90 ITAYRQKVMD----SPHVYAIADTAYNEMM-GDGVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 90 ~~~y~~~~~~----~PHiyaiA~~Ay~~m~-~~~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
.+.|+-+... .+||-. +..++. ..+.+++++++|..|.|||++++++.+.|-.
T Consensus 7 ~~kyRP~~f~divGq~~v~~----~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVR----ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHH----HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4566655543 477654 344444 3567899999999999999999999998864
No 346
>PRK09039 hypothetical protein; Validated
Probab=79.96 E-value=17 Score=42.10 Aligned_cols=38 Identities=3% Similarity=0.096 Sum_probs=20.1
Q ss_pred CCCCchhhhhhhHHHHHHhhccccchhhhhhhcccCCCC
Q 001592 952 ESNGSLTAVNHLTKEFEQRRQNFDDDAKALIEIKTTQPA 990 (1048)
Q Consensus 952 ~~~~~~~~v~~l~~efe~r~q~f~~~a~~~~e~~~~~~~ 990 (1048)
..+.+...+..++..+..-.....++....+.| .|.++
T Consensus 235 L~~~~~~~L~~ia~~l~~~~~~~p~~i~~~I~I-~GHTD 272 (343)
T PRK09039 235 LNPEGQAEIAKLAAALIELAKEIPPEINWVLRV-DGHTD 272 (343)
T ss_pred cCHHHHHHHHHHHHHHHHhhhccCCcCCeeEEE-EEecC
Confidence 334566667777777766543344444444444 34443
No 347
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=79.95 E-value=1.4 Score=47.55 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQ 142 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~ 142 (1048)
...+.+.|.|.+|||||+..++|+-
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVAS 55 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999999888764
No 348
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=79.92 E-value=1.5 Score=46.53 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..++|+-.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45788999999999999999988643
No 349
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=79.90 E-value=1.4 Score=48.05 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQ 142 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~ 142 (1048)
...+.+.|.|++|||||+..+.|+-
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~G 69 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSG 69 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999999999998854
No 350
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=79.88 E-value=1.4 Score=48.85 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|+||||||+..|+|+-.+
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 346789999999999999999887654
No 351
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.82 E-value=1.4 Score=46.85 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|++|||||+..|.++..
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45788999999999999998888644
No 352
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=79.79 E-value=1.6 Score=46.43 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.6
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 121 QSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
--|.|+|..|||||+..+.+++.+..
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~ 27 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQ 27 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 35889999999999999999987754
No 353
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=79.75 E-value=50 Score=37.44 Aligned_cols=76 Identities=21% Similarity=0.192 Sum_probs=45.0
Q ss_pred cCchHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 001592 818 DVPQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMK-------SMEEMWQKQMASLQMS 890 (1048)
Q Consensus 818 ~~leee~~~l~~~l~eLq~r~~e~e~~l~eleeE~~~L~~~l~~~e~~~~e~e~k~~-------~~ee~~qk~~~~Lq~~ 890 (1048)
..+++-+.++.++-..++.++.++..+..++++|...|..++.+.-+...++.++.+ +|-...|..+..|+..
T Consensus 130 q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsK 209 (401)
T PF06785_consen 130 QHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESK 209 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHH
Confidence 345555666667777777777777777777777777777666665544433322221 3334445555555555
Q ss_pred HHH
Q 001592 891 LAA 893 (1048)
Q Consensus 891 La~ 893 (1048)
..+
T Consensus 210 VqD 212 (401)
T PF06785_consen 210 VQD 212 (401)
T ss_pred HHH
Confidence 543
No 354
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=79.74 E-value=1.6 Score=41.61 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=23.0
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 122 SIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
.++|.|++|+|||.++-.++.++...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~ 27 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS 27 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc
Confidence 37899999999999999998888765
No 355
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=79.74 E-value=1.4 Score=47.61 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|++|||||+..+.+.-.
T Consensus 46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999988643
No 356
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=79.70 E-value=1.3 Score=49.87 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~y 143 (1048)
...++|+|+||+||||++=-+++.
T Consensus 146 g~gvli~G~sg~GKS~lal~Li~r 169 (304)
T TIGR00679 146 GVGVLITGKSGVGKSETALELINR 169 (304)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 578999999999999998877775
No 357
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=79.63 E-value=1.5 Score=46.60 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
....+.|.|++|||||+..+.++-.+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46788999999999999988886543
No 358
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=79.63 E-value=1.7 Score=49.60 Aligned_cols=26 Identities=31% Similarity=0.563 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
..+|+|+|+.|||||+..+.+|.++-
T Consensus 143 ~~siii~G~t~sGKTt~lnall~~Ip 168 (312)
T COG0630 143 RKSIIICGGTASGKTTLLNALLDFIP 168 (312)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCC
Confidence 47899999999999999999988864
No 359
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.61 E-value=1.4 Score=48.22 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..+.|.-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35688999999999999998887643
No 360
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=79.59 E-value=2.3 Score=49.20 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=26.4
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 117 DGVNQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 117 ~~~~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
+..-..|+|+|++|+|||+.++.+-+||...
T Consensus 35 ~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~ 65 (350)
T CHL00081 35 DPKIGGVMIMGDRGTGKSTTIRALVDLLPEI 65 (350)
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3444689999999999999999999998753
No 361
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=79.59 E-value=1.4 Score=52.43 Aligned_cols=42 Identities=19% Similarity=0.289 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 103 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 103 iyaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
+|.+.-.|...+..-.+.|.+.|.|.||+|||+..+.|+...
T Consensus 140 ~l~tgi~aid~l~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 140 VFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGC 181 (434)
T ss_pred eccchhHHhhhcceecCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 445556788888778899999999999999999998887654
No 362
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.56 E-value=1.5 Score=48.21 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 356889999999999999999887543
No 363
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.48 E-value=1.5 Score=48.81 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..+.+.-.
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 45789999999999999999988764
No 364
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.45 E-value=1.5 Score=46.23 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=21.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAM 141 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il 141 (1048)
...+.+.|.|+||||||+..|.+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~ 54 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLA 54 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHh
Confidence 456889999999999999988876
No 365
>PRK07429 phosphoribulokinase; Provisional
Probab=79.36 E-value=1.4 Score=50.66 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
+.=-|-|+|.||||||+.++.+...|
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll 32 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLL 32 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHh
Confidence 34467789999999999998887654
No 366
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=79.33 E-value=2.2 Score=50.49 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001592 121 QSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~yL 144 (1048)
-.|+|.|++|+|||+.++.+-+.|
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhc
Confidence 589999999999999999886544
No 367
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=79.31 E-value=1.5 Score=46.41 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|++|||||+..+.++-.+
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 457899999999999999988886543
No 368
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=79.20 E-value=1.6 Score=45.40 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|.||||||+..+.+.-.+
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999888886543
No 369
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=79.20 E-value=1.6 Score=45.31 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|.+|||||+..|.+.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 357889999999999999988886543
No 370
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=79.17 E-value=1.5 Score=47.20 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|++|||||+..+++.-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988888643
No 371
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=79.17 E-value=1.5 Score=48.85 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQ 142 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~ 142 (1048)
...+.+.|.|+||||||+..|.|.-
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~l~G 60 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLVG 60 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568999999999999998887753
No 372
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=79.16 E-value=24 Score=31.35 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=26.9
Q ss_pred chHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001592 820 PQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKW 866 (1048)
Q Consensus 820 leee~~~l~~~l~eLq~r~~e~e~~l~eleeE~~~L~~~l~~~e~~~ 866 (1048)
++..+..+-..+..|+.++.+++.+...+.+++..|+...+++....
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~ 55 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQER 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666666655555555555555555554333
No 373
>PRK06921 hypothetical protein; Provisional
Probab=79.15 E-value=3.1 Score=46.44 Aligned_cols=29 Identities=31% Similarity=0.350 Sum_probs=24.8
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
....+++.|++|+|||..+..|.+.+...
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 46799999999999999999888877653
No 374
>PRK05642 DNA replication initiation factor; Validated
Probab=79.14 E-value=3 Score=45.54 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=22.9
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 121 QSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
-.++|.|++|+|||..+..+..++...
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~ 72 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR 72 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 468999999999999999888777643
No 375
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=79.13 E-value=1.6 Score=46.86 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..|.+.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34678899999999999998888643
No 376
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=79.09 E-value=1.3 Score=47.10 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCCChhhHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAM 141 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il 141 (1048)
...++|+|++|||||+..|.|.
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~ 46 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIG 46 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3788999999999999999984
No 377
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=79.01 E-value=1.5 Score=45.78 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.8
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL 144 (1048)
|+|.|.+|||||+.++.+-+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999999887764
No 378
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=78.97 E-value=30 Score=35.03 Aligned_cols=60 Identities=28% Similarity=0.330 Sum_probs=28.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001592 823 QVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQK 882 (1048)
Q Consensus 823 e~~~l~~~l~eLq~r~~e~e~~l~eleeE~~~L~~~l~~~e~~~~e~e~k~~~~ee~~qk 882 (1048)
.+..+...++.++..+..++..+.+++.++.....+...+.......+..++...+++++
T Consensus 60 ~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~k 119 (151)
T PF11559_consen 60 KLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQK 119 (151)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444555544444445544444444444444444433
No 379
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=78.97 E-value=2.4 Score=51.74 Aligned_cols=36 Identities=31% Similarity=0.492 Sum_probs=26.3
Q ss_pred HHHHHhhhCCC-ceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 109 TAYNEMMGDGV-NQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 109 ~Ay~~m~~~~~-~QsIiisGESGaGKTet~k~il~yL 144 (1048)
.....+..... .+-+|++|.+|+|||++.+.+.+.|
T Consensus 33 ~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 33 SWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred HHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 34444444433 4567789999999999999988776
No 380
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=78.97 E-value=1.6 Score=47.62 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|++|||||+..+.++-.+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999999887654
No 381
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.96 E-value=2.5 Score=49.95 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=30.7
Q ss_pred HHHHhhhC-CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 110 AYNEMMGD-GVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 110 Ay~~m~~~-~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
.++++... +.++++|++|+.|.|||+.++.+-++|-.
T Consensus 27 ~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 27 TIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45555554 56789999999999999999999988865
No 382
>PRK00279 adk adenylate kinase; Reviewed
Probab=78.92 E-value=1.6 Score=46.89 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.1
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHH
Q 001592 122 SIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL~ 145 (1048)
-|+|.|.+|||||+.++.+-+++-
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999877653
No 383
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=78.87 E-value=1.7 Score=44.05 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.2
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 121 QSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
-.|++.|.||||||+..|.+-.-|-
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~ 37 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELG 37 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhC
Confidence 4799999999999999999987664
No 384
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=78.85 E-value=1.6 Score=48.63 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..+.|.-.
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45788999999999999998888644
No 385
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=78.78 E-value=2.2 Score=45.63 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=26.7
Q ss_pred HHHhhhCC--CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 111 YNEMMGDG--VNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 111 y~~m~~~~--~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
...|+..+ ....++|+|++|+|||..+..++..++.
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~ 45 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAG 45 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44555443 3567899999999999998888776654
No 386
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=78.75 E-value=3 Score=47.14 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
+..+.++|+|++|+|||..++.+.+.+
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999887654
No 387
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=78.73 E-value=1.6 Score=47.69 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..|.+.-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998888643
No 388
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=78.70 E-value=1.6 Score=47.45 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 457899999999999999998887554
No 389
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=78.70 E-value=1.6 Score=45.46 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999888875443
No 390
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.67 E-value=1.6 Score=47.06 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...|.+.|.|++|||||+..+.+.-.
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45688999999999999998888644
No 391
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=78.63 E-value=1.6 Score=46.72 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..+.|.--
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45789999999999999998887543
No 392
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=78.63 E-value=3.5 Score=42.32 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=26.9
Q ss_pred hhCCCceEEEEcCCCCCChhhHHHHHHHHHHHccC
Q 001592 115 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGG 149 (1048)
Q Consensus 115 ~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~ 149 (1048)
...+-++++|+.|++|+||++.++.+.+.|..-..
T Consensus 14 ~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~ 48 (162)
T PF13177_consen 14 KSGRLPHALLFHGPSGSGKKTLALAFARALLCSNP 48 (162)
T ss_dssp HCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-
T ss_pred HcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 34577999999999999999999999998866443
No 393
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=78.61 E-value=1.6 Score=46.68 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 357889999999999999999886543
No 394
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=78.61 E-value=2.3 Score=45.13 Aligned_cols=28 Identities=25% Similarity=0.227 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
..+.+.|+|++|||||..+..+....+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~ 38 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR 38 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4688999999999999988666555443
No 395
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=78.54 E-value=1.8 Score=44.81 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 356789999999999999988886544
No 396
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=78.53 E-value=1.6 Score=47.99 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..+.+.-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988877644
No 397
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=78.50 E-value=1.7 Score=47.41 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999988886543
No 398
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=78.50 E-value=1.6 Score=47.88 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..+.+.-.
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45688999999999999998887654
No 399
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=78.42 E-value=2.6 Score=52.12 Aligned_cols=45 Identities=24% Similarity=0.413 Sum_probs=35.1
Q ss_pred CCchhHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 100 SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 100 ~PHiyaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
.+|+-..=..++.. .+..++++++|+.|.|||+++|.+.+.|...
T Consensus 21 q~~v~~~L~~~i~~---~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 21 QEHITKTLKNAIKQ---GKISHAYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred cHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 58876554444432 4568999999999999999999999888654
No 400
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=78.41 E-value=1.6 Score=46.75 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.8
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL 144 (1048)
|+|.|.+|||||+.++.+-+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999999987654
No 401
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=78.40 E-value=2.9 Score=49.44 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL 144 (1048)
+..|++.|.+|+|||+.++.+-+.+
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999999999999887664
No 402
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=78.39 E-value=1.6 Score=45.01 Aligned_cols=22 Identities=23% Similarity=0.524 Sum_probs=19.1
Q ss_pred CceEEEEcCCCCCChhhHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFA 140 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~i 140 (1048)
.--|+++.|.||||||+..|.+
T Consensus 36 aGECvvL~G~SG~GKStllr~L 57 (235)
T COG4778 36 AGECVVLHGPSGSGKSTLLRSL 57 (235)
T ss_pred CccEEEeeCCCCCcHHHHHHHH
Confidence 3579999999999999887766
No 403
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=78.37 E-value=1.7 Score=47.86 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..|.|.-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998887543
No 404
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=78.36 E-value=1.7 Score=44.49 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|.||||||+..+.++-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999999988644
No 405
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=78.36 E-value=2.8 Score=52.37 Aligned_cols=53 Identities=23% Similarity=0.417 Sum_probs=38.8
Q ss_pred HHHHhhcCCC----CCchhHHHHHHHHHhhh-CCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 90 ITAYRQKVMD----SPHVYAIADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 90 ~~~y~~~~~~----~PHiyaiA~~Ay~~m~~-~~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
.+.|+-+... .+|+.. +...+.. .+-.+++|++|+.|.|||++++.+.+.|-+
T Consensus 7 a~KyRP~~f~divGQe~vv~----~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 7 ARKWRPQTFAEVVGQEHVLT----ALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred HHHhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 3556654433 477765 3344444 456889999999999999999999998866
No 406
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=78.35 E-value=1.7 Score=47.66 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999998886543
No 407
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=78.35 E-value=1.8 Score=45.78 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~y 143 (1048)
..+.+.|.|++|||||+..+.+.-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999998887543
No 408
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=78.33 E-value=1.2 Score=49.22 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=26.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
...+.+.|.|+||||||+..|.++-.+..-+
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~ 54 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNL 54 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcCCCC
Confidence 5678999999999999999999988765433
No 409
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=78.32 E-value=1.6 Score=48.18 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 457889999999999999999886543
No 410
>PRK13949 shikimate kinase; Provisional
Probab=78.28 E-value=1.8 Score=44.90 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=21.2
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHH
Q 001592 122 SIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL~ 145 (1048)
.|+|.|.+|||||+.++.+-+.|-
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 599999999999999998877653
No 411
>PLN02165 adenylate isopentenyltransferase
Probab=78.25 E-value=1.9 Score=49.42 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=23.8
Q ss_pred HhhhCCCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 113 EMMGDGVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 113 ~m~~~~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
.|........|+|.|.+|||||+.+..+-+.
T Consensus 36 ~~~~~~~g~iivIiGPTGSGKStLA~~LA~~ 66 (334)
T PLN02165 36 AMEQNCKDKVVVIMGATGSGKSRLSVDLATR 66 (334)
T ss_pred ccccCCCCCEEEEECCCCCcHHHHHHHHHHH
Confidence 4445556668999999999999988776443
No 412
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=78.24 E-value=1.7 Score=47.84 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 31 LKNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 356899999999999999999886443
No 413
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.22 E-value=1.7 Score=47.40 Aligned_cols=25 Identities=32% Similarity=0.512 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQ 142 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~ 142 (1048)
...+.+.|.|+||||||+..+.+.-
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINR 49 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4568899999999999998888753
No 414
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=78.20 E-value=1.7 Score=46.73 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|++|||||+..+.|+-.+
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999998886543
No 415
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=78.19 E-value=1.4 Score=48.78 Aligned_cols=37 Identities=19% Similarity=0.122 Sum_probs=29.6
Q ss_pred HHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 109 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 109 ~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
+|...|.--++.|-++|.|++|+|||+.++.+.+.+.
T Consensus 5 ~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 5 RVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred hheeeecccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 4445555667899999999999999998888876653
No 416
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=78.13 E-value=1.7 Score=47.75 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|+||||||+..+.|.-.+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 357899999999999999999886543
No 417
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=78.12 E-value=1.7 Score=47.89 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999988886543
No 418
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=78.11 E-value=1.7 Score=48.51 Aligned_cols=27 Identities=30% Similarity=0.330 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|.||||||+..+.|.-.+
T Consensus 48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 48 HENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356889999999999999999998765
No 419
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.08 E-value=2.7 Score=53.85 Aligned_cols=52 Identities=19% Similarity=0.402 Sum_probs=37.9
Q ss_pred HHHhhcCCC----CCchhHHHHHHHHHhhh-CCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 91 TAYRQKVMD----SPHVYAIADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 91 ~~y~~~~~~----~PHiyaiA~~Ay~~m~~-~~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
+.||-.... ..||-.. ++++.. .+-..++||+|+.|.|||++++++.+.|-.
T Consensus 8 eKyRP~tFddIIGQe~Iv~~----LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHA----LTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHH----HHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 556654433 4777644 344343 467889999999999999999999998865
No 420
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=78.04 E-value=1.8 Score=45.98 Aligned_cols=26 Identities=19% Similarity=0.443 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|++|||||+..+.++..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998888644
No 421
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=78.04 E-value=1.5 Score=44.80 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.1
Q ss_pred EEEEcCCCCCChhhHHHHHHHH
Q 001592 122 SIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~y 143 (1048)
-++|+|.+|||||+..+.+++.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3789999999999999987765
No 422
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=78.02 E-value=1.8 Score=45.76 Aligned_cols=27 Identities=26% Similarity=0.198 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999888876443
No 423
>PRK07952 DNA replication protein DnaC; Validated
Probab=78.00 E-value=2.1 Score=47.16 Aligned_cols=29 Identities=34% Similarity=0.394 Sum_probs=26.1
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
.+.++++|.+|+|||..+..|..+|...+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g 127 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRG 127 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999998754
No 424
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.97 E-value=1.9 Score=44.54 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 457899999999999999888775543
No 425
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=77.89 E-value=31 Score=38.13 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=39.8
Q ss_pred ccCchHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001592 817 KDVPQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQK 882 (1048)
Q Consensus 817 ~~~leee~~~l~~~l~eLq~r~~e~e~~l~eleeE~~~L~~~l~~~e~~~~e~e~k~~~~ee~~qk 882 (1048)
+..+..++..+..+++.++.....+++.+...+++.+.|..++++.+.-..++.--|..|.+.++.
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666666666666666666666666666666666666666555555555544
No 426
>PRK14532 adenylate kinase; Provisional
Probab=77.87 E-value=1.6 Score=45.53 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.5
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001592 122 SIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL 144 (1048)
.|+|.|.+|||||+.++.+-+.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999997765
No 427
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=77.87 E-value=2.7 Score=49.14 Aligned_cols=40 Identities=33% Similarity=0.432 Sum_probs=32.9
Q ss_pred HHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHccC
Q 001592 110 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGG 149 (1048)
Q Consensus 110 Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~ 149 (1048)
++....+...+-.|+|.|.+|+|||.++|.+++-|-..+.
T Consensus 32 ~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~ 71 (366)
T COG1474 32 FLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA 71 (366)
T ss_pred HHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc
Confidence 3666666666667999999999999999999999877654
No 428
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=77.82 E-value=1.7 Score=48.36 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999888876443
No 429
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.81 E-value=1.8 Score=46.08 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 457899999999999999988876554
No 430
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=77.80 E-value=1.2 Score=55.20 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=24.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
+..+.+.|.|+||||||+..++++.++
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999999886
No 431
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=77.78 E-value=1.8 Score=47.52 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..+.|.-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 27 EENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35788999999999999999988653
No 432
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=77.77 E-value=1e+02 Score=39.45 Aligned_cols=79 Identities=20% Similarity=0.240 Sum_probs=60.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001592 822 EQVQALPTALAELQRRVLKAEATLG----QKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAARKS 897 (1048)
Q Consensus 822 ee~~~l~~~l~eLq~r~~e~e~~l~----eleeE~~~L~~~l~~~e~~~~e~e~k~~~~ee~~qk~~~~Lq~~La~~kk~ 897 (1048)
...+..++.+.+++-|..-+|+.+. .....++.+.+.+++....+..-|.+..+-..+++..|.+|+.+-+++|+.
T Consensus 969 k~aKmkqeelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr~Ke~efeetmdaLq~di~~lEsek~elKqr 1048 (1243)
T KOG0971|consen 969 KSAKMKQEELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQALLRKKEKEFEETMDALQADIDQLESEKAELKQR 1048 (1243)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3444455777888888888888876 345667778888888887777777777777777888889999999999998
Q ss_pred hhc
Q 001592 898 LAS 900 (1048)
Q Consensus 898 L~~ 900 (1048)
|..
T Consensus 1049 l~~ 1051 (1243)
T KOG0971|consen 1049 LNS 1051 (1243)
T ss_pred hhh
Confidence 865
No 433
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=77.76 E-value=1.3 Score=55.17 Aligned_cols=29 Identities=24% Similarity=0.412 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
...+.|.|.|+||||||+..|+++..+..
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~p 387 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVFDP 387 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 46788999999999999999999877643
No 434
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=77.63 E-value=1.9 Score=46.33 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|.+|||||+..+++.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 457889999999999999988886543
No 435
>PRK06851 hypothetical protein; Provisional
Probab=77.62 E-value=2.6 Score=49.12 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=27.1
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 117 DGVNQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 117 ~~~~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
...++.+||+|.+|+|||+.+|.+.+.+...
T Consensus 27 ~~~~~~~il~G~pGtGKStl~~~i~~~~~~~ 57 (367)
T PRK06851 27 DGANRIFILKGGPGTGKSTLMKKIGEEFLEK 57 (367)
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3568999999999999999999999887664
No 436
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=77.56 E-value=1.8 Score=48.79 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|+||||||+..|+|.-.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999999986543
No 437
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=77.56 E-value=1.9 Score=46.46 Aligned_cols=26 Identities=27% Similarity=0.278 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|++|||||+..+.++-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45788999999999999998887643
No 438
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=77.52 E-value=1.8 Score=46.31 Aligned_cols=26 Identities=23% Similarity=0.528 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..|.+.-.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 35688999999999999988888643
No 439
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=77.49 E-value=1.5 Score=54.25 Aligned_cols=29 Identities=17% Similarity=0.444 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
+..+.|.|.|+||||||+..|.++..+..
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~~ 384 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVNLIPRFYEP 384 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 46789999999999999999999877643
No 440
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=77.49 E-value=1.9 Score=47.32 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQ 142 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~ 142 (1048)
...+.+.|.|+||||||+..+.+.-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNR 50 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3568899999999999998888754
No 441
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=77.47 E-value=2.5 Score=44.94 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=23.4
Q ss_pred HHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 110 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 110 Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
|...++... ...+|.|..|+|||.+...++.++
T Consensus 9 Ai~~~~~~~--~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 9 AIQSALSSN--GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHCTSS--E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHcCC--CCEEEECCCCCChHHHHHHHHHHh
Confidence 444444332 268999999999999999888888
No 442
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=77.45 E-value=3.2 Score=51.23 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=38.5
Q ss_pred HHHHhhcCCC----CCchhHHHHHHHHHhh-hCCCceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 90 ITAYRQKVMD----SPHVYAIADTAYNEMM-GDGVNQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 90 ~~~y~~~~~~----~PHiyaiA~~Ay~~m~-~~~~~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
.+.|+..... .+|+-. .+..+. ..+.++++|++|+.|.|||+.++.+-+.|.+.
T Consensus 7 ~~KyRP~~F~dIIGQe~iv~----~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 7 YRKYRPHNFKQIIGQELIKK----ILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HHHhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3556544432 466543 334443 34668999999999999999999999998654
No 443
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=77.44 E-value=1.8 Score=46.90 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|++|||||+..+.++-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35788999999999999988887543
No 444
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=77.42 E-value=1.7 Score=48.35 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..|.|.-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 34688999999999999988877543
No 445
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=77.39 E-value=1.9 Score=47.64 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|++|||||+..+.|.-.+
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999999886543
No 446
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=77.34 E-value=1.9 Score=43.30 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|++|||||+..+.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 35688899999999999988887544
No 447
>PRK09183 transposase/IS protein; Provisional
Probab=77.34 E-value=2.2 Score=47.37 Aligned_cols=27 Identities=33% Similarity=0.345 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
.+.|+|.|++|+|||..+..+...++.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 467999999999999999988665544
No 448
>PRK06835 DNA replication protein DnaC; Validated
Probab=77.30 E-value=3.9 Score=47.08 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=25.8
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
....++|.|.+|+|||..+..|.+.+..-+
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g 211 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRG 211 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 348899999999999999999998887643
No 449
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=77.29 E-value=1.8 Score=49.06 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|++|||||+..|.++-.+
T Consensus 28 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 28 ARGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999999886543
No 450
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=77.25 E-value=1.9 Score=47.87 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (261)
T PRK14263 32 RKNEITGFIGPSGCGKSTVLRSLNRMN 58 (261)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 357899999999999999999885443
No 451
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=77.24 E-value=3.4 Score=42.88 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=25.5
Q ss_pred HHHHHHhhhCCCceEEEEcCCCCCChhhHHHHH
Q 001592 108 DTAYNEMMGDGVNQSIIISGESGAGKTETAKFA 140 (1048)
Q Consensus 108 ~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~i 140 (1048)
..++..|--..+.--|+|.|.+|||||+..+.+
T Consensus 7 ~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l 39 (190)
T cd00879 7 YNVLSSLGLYNKEAKILFLGLDNAGKTTLLHML 39 (190)
T ss_pred HHHHHHhhcccCCCEEEEECCCCCCHHHHHHHH
Confidence 445666655666677999999999999987755
No 452
>PRK10884 SH3 domain-containing protein; Provisional
Probab=77.24 E-value=26 Score=37.63 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001592 830 ALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEE 878 (1048)
Q Consensus 830 ~l~eLq~r~~e~e~~l~eleeE~~~L~~~l~~~e~~~~e~e~k~~~~ee 878 (1048)
...+++.++...+..+.+++++|+.|+++++...++...++.+...++.
T Consensus 119 ~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 119 RTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444455555555555555555555554444444433
No 453
>PLN02200 adenylate kinase family protein
Probab=77.22 E-value=2.3 Score=46.52 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
..--|+|.|.+|||||+.++.+.+.+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999988765
No 454
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=77.19 E-value=1.9 Score=46.53 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
..+.+.|.|++|||||+..+.+...+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999887543
No 455
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=77.18 E-value=1.6 Score=54.12 Aligned_cols=28 Identities=21% Similarity=0.491 Sum_probs=24.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
++.+.|.|.|+||||||+..|.++..+.
T Consensus 364 ~~Ge~i~IvG~sGsGKSTLlklL~gl~~ 391 (576)
T TIGR02204 364 RPGETVALVGPSGAGKSTLFQLLLRFYD 391 (576)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 5679999999999999999999988654
No 456
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=77.17 E-value=1.7 Score=48.16 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..+.++-.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 35688999999999999999988654
No 457
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=77.17 E-value=1.9 Score=47.62 Aligned_cols=27 Identities=30% Similarity=0.298 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|++|||||+..+.|.-.+
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 357889999999999999999887543
No 458
>PRK13975 thymidylate kinase; Provisional
Probab=77.13 E-value=2 Score=45.13 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001592 121 QSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~yL 144 (1048)
.-|+|.|..|||||+.++.+-+.|
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999887776
No 459
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=77.09 E-value=2.6 Score=42.88 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=22.4
Q ss_pred HHhhhCCCceEEEEcCCCCCChhhHHHHHH
Q 001592 112 NEMMGDGVNQSIIISGESGAGKTETAKFAM 141 (1048)
Q Consensus 112 ~~m~~~~~~QsIiisGESGaGKTet~k~il 141 (1048)
+.+......-.|+|.|.+|||||+..+.+.
T Consensus 6 ~~~~~~~~~~~v~i~G~~g~GKStLl~~l~ 35 (173)
T cd04155 6 RKLRKSSEEPRILILGLDNAGKTTILKQLA 35 (173)
T ss_pred HHhhccCCccEEEEEccCCCCHHHHHHHHh
Confidence 344444456679999999999998877663
No 460
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=77.07 E-value=1.9 Score=46.95 Aligned_cols=27 Identities=19% Similarity=0.458 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|++|||||+..+.|.-.+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 457899999999999999999887554
No 461
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=77.06 E-value=49 Score=41.44 Aligned_cols=143 Identities=22% Similarity=0.263 Sum_probs=0.0
Q ss_pred chHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001592 820 PQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAARKSLA 899 (1048)
Q Consensus 820 leee~~~l~~~l~eLq~r~~e~e~~l~eleeE~~~L~~~l~~~e~~~~e~e~k~~~~ee~~qk~~~~Lq~~La~~kk~L~ 899 (1048)
+++....|...-+.|..++-+.+..+.++++|.+.+++..........+..+=+....-++..++..++-.|.+++..++
T Consensus 268 ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~e 347 (1265)
T KOG0976|consen 268 IEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAE 347 (1265)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCcCCCCchhhhhhhHHHHHHhhccccchhh
Q 001592 900 SDNTPGEPGRLDASTSPHLYDSEDTMSMGSRTPGGSTPMKFLNIVPDAGSGRESNGSLTAVNHLTKEFEQRRQNFDDDAK 979 (1048)
Q Consensus 900 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~efe~r~q~f~~~a~ 979 (1048)
. .+.+-.|.|..+--..-||+
T Consensus 348 g-----------------------------------------------------------fddk~~eLEKkrd~al~dvr 368 (1265)
T KOG0976|consen 348 G-----------------------------------------------------------FDDKLNELEKKRDMALMDVR 368 (1265)
T ss_pred c-----------------------------------------------------------hhHHHHHHHHHHHHHHHhHH
Q ss_pred hhhhcccCCCCCCCCChHHHHHHHH-----------------hHHHHHHHHHHH---HHHHHHHHhhhc
Q 001592 980 ALIEIKTTQPASTVHPDVELRKLKM-----------------RFETWKKDYKTR---LREAKVRLNKLG 1028 (1048)
Q Consensus 980 ~~~e~~~~~~~~~~~~~~el~~lk~-----------------~f~~wkkd~~~r---lr~tk~~l~~~~ 1028 (1048)
.|-|+|. |-+.||+.|+. ||+.-|||-.+- |-||-.+|+++|
T Consensus 369 ~i~e~k~-------nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mg 430 (1265)
T KOG0976|consen 369 SIQEKKE-------NVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMG 430 (1265)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHh
No 462
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.06 E-value=2.9 Score=52.06 Aligned_cols=52 Identities=23% Similarity=0.450 Sum_probs=36.9
Q ss_pred HHHhhcCCC----CCchhHHHHHHHHHhhh-CCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 91 TAYRQKVMD----SPHVYAIADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 91 ~~y~~~~~~----~PHiyaiA~~Ay~~m~~-~~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
+.||-+... .+|+-. +..++.. .+..+++|++|..|.|||++++++.+.|-.
T Consensus 7 rKyRPktFddVIGQe~vv~----~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSR----ALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred HHhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456544432 477733 3444444 445789999999999999999999988854
No 463
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=77.05 E-value=1.4 Score=54.74 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
+..|.|.|.|+||||||+..|+++..+
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 457899999999999999999987765
No 464
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=77.04 E-value=1.9 Score=47.33 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQ 142 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~ 142 (1048)
...+.+.|.|+||||||+..+.|.-
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 29 NQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999999888853
No 465
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=77.04 E-value=2.3 Score=49.70 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
+...|++.|.+|+|||+++..+..+++
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999998887654
No 466
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=77.03 E-value=2.4 Score=50.46 Aligned_cols=29 Identities=31% Similarity=0.385 Sum_probs=24.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
+.+..|+++|.+|||||+++-.+..||..
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~ 125 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKK 125 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 34678999999999999999888888763
No 467
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=77.01 E-value=1.9 Score=47.53 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
.....+.|.|+||||||+..+.++-.+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356788999999999999999886543
No 468
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=77.00 E-value=1.4 Score=45.48 Aligned_cols=25 Identities=40% Similarity=0.449 Sum_probs=18.6
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL 144 (1048)
-+..=|-||||||||+..+.|--.|
T Consensus 32 GeVLgiVGESGSGKtTLL~~is~rl 56 (258)
T COG4107 32 GEVLGIVGESGSGKTTLLKCISGRL 56 (258)
T ss_pred CcEEEEEecCCCcHHhHHHHHhccc
Confidence 4667788999999998766554433
No 469
>CHL00181 cbbX CbbX; Provisional
Probab=76.95 E-value=2.2 Score=48.20 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=23.9
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 122 SIIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
.|++.|++|+|||+.++.+-+++...+
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g 87 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLG 87 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 489999999999999999998887654
No 470
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=76.90 E-value=2 Score=46.32 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 467899999999999999988886543
No 471
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=76.88 E-value=1.8 Score=46.01 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001592 121 QSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~yL 144 (1048)
--|+|+|-||||||+.++.+...+
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999887765
No 472
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=76.88 E-value=2.4 Score=47.58 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=24.7
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 122 SIIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
.|.|+|.||||||+.+..++..|...+
T Consensus 3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G 29 (274)
T PRK14493 3 VLSIVGYKATGKTTLVERLVDRLSGRG 29 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 588999999999999999999998865
No 473
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=76.84 E-value=2 Score=47.81 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..+.+.-.
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 46789999999999999998887654
No 474
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=76.82 E-value=33 Score=34.04 Aligned_cols=55 Identities=22% Similarity=0.360 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001592 845 LGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAARKSLA 899 (1048)
Q Consensus 845 l~eleeE~~~L~~~l~~~e~~~~e~e~k~~~~ee~~qk~~~~Lq~~La~~kk~L~ 899 (1048)
+..++++...++..+.+++.........+...+..|..+...|+.++..+++.+.
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~ 115 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIE 115 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555566666555666666666666666666666666666555544
No 475
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=76.81 E-value=2.8 Score=53.24 Aligned_cols=43 Identities=21% Similarity=0.286 Sum_probs=33.5
Q ss_pred CchhHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 101 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 101 PHiyaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
.|+-.- ....+.+...+...++||.|++|+|||+.++.+-+++
T Consensus 34 e~ii~~-~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 34 DHILGE-GRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHHhhh-hHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 555321 3556677777777899999999999999999998765
No 476
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=76.79 E-value=8 Score=43.50 Aligned_cols=66 Identities=26% Similarity=0.322 Sum_probs=50.6
Q ss_pred HHHHHHHHHhh-hCCCceEEEEcCCCCCChhhHHHHHHHHHHHccC---------------C------------------
Q 001592 105 AIADTAYNEMM-GDGVNQSIIISGESGAGKTETAKFAMQYLAALGG---------------G------------------ 150 (1048)
Q Consensus 105 aiA~~Ay~~m~-~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~---------------~------------------ 150 (1048)
++|....+.+. .++..+-|=|+|..|||||+..-.+...|..-+. |
T Consensus 35 ~~a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~v 114 (323)
T COG1703 35 ALARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGV 114 (323)
T ss_pred hHHHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCe
Confidence 44556655554 4678889999999999999999988888876431 0
Q ss_pred ----------CchHHHHHHhhhHHHHHhhc
Q 001592 151 ----------SEGIEYEILQTNHILEAFGN 170 (1048)
Q Consensus 151 ----------~~~i~~~il~sn~iLEAFGN 170 (1048)
.+++......+--+|||+|-
T Consensus 115 FiRs~~srG~lGGlS~at~~~i~~ldAaG~ 144 (323)
T COG1703 115 FIRSSPSRGTLGGLSRATREAIKLLDAAGY 144 (323)
T ss_pred EEeecCCCccchhhhHHHHHHHHHHHhcCC
Confidence 12677888889999999993
No 477
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=76.79 E-value=2 Score=46.85 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 26 DPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999888886543
No 478
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=76.77 E-value=2.6 Score=46.85 Aligned_cols=28 Identities=25% Similarity=0.172 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
....++|+|++|+|||..+-+++...+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~ 62 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS 62 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4678999999999999887776555443
No 479
>PRK10865 protein disaggregation chaperone; Provisional
Probab=76.77 E-value=2.6 Score=54.68 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.8
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001592 121 QSIIISGESGAGKTETAKFAMQYLA 145 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~il~yL~ 145 (1048)
.++++.|++|+|||+.++.+-+++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhh
Confidence 5899999999999999999988874
No 480
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=76.73 E-value=1.9 Score=47.58 Aligned_cols=26 Identities=31% Similarity=0.262 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..|.+.-.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998888643
No 481
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=76.73 E-value=2.5 Score=42.81 Aligned_cols=26 Identities=38% Similarity=0.459 Sum_probs=22.8
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHcc
Q 001592 123 IIISGESGAGKTETAKFAMQYLAALG 148 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il~yL~~~~ 148 (1048)
|.++|.+|||||+.++.+..++...+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g 27 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARG 27 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 78899999999999999988886654
No 482
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=76.72 E-value=2.1 Score=47.88 Aligned_cols=26 Identities=38% Similarity=0.442 Sum_probs=22.0
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 122 SIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
-|||+|-.|||||+-++.|.+||...
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~ 28 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEK 28 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhc
Confidence 38999999999999999999999883
No 483
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=76.67 E-value=3.3 Score=47.61 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=31.5
Q ss_pred HHHHHhh--hCCCceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 109 TAYNEMM--GDGVNQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 109 ~Ay~~m~--~~~~~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
.+|+.+. ..+-+++++++|++|.|||..++.+-+.|..-
T Consensus 8 ~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~ 48 (325)
T PRK08699 8 EQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCE 48 (325)
T ss_pred HHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 3455554 45789999999999999999999998887653
No 484
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.66 E-value=3 Score=51.60 Aligned_cols=45 Identities=27% Similarity=0.392 Sum_probs=33.8
Q ss_pred CCchhHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHc
Q 001592 100 SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 147 (1048)
Q Consensus 100 ~PHiyaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~ 147 (1048)
..||-..-..++ ...+.+.++|++|..|.|||++++.+.+.|-..
T Consensus 18 q~~i~~~L~~~i---~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 18 QEHVTEPLSSAL---DAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred cHHHHHHHHHHH---HcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 477665433332 234668899999999999999999999887653
No 485
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=76.64 E-value=2 Score=48.77 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|++|||||+..|+++-.+
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356788999999999999999887544
No 486
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=76.63 E-value=1.9 Score=47.64 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|.+|||||+..+.|.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998888654
No 487
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=76.60 E-value=2.1 Score=45.54 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~yL 144 (1048)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 457899999999999999999887654
No 488
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=76.59 E-value=1.7 Score=50.02 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=17.4
Q ss_pred eEEEEcCCCCCChhhHHHHH
Q 001592 121 QSIIISGESGAGKTETAKFA 140 (1048)
Q Consensus 121 QsIiisGESGaGKTet~k~i 140 (1048)
--++|-|+||+|||++.++|
T Consensus 30 ef~vllGPSGcGKSTlLr~I 49 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMI 49 (338)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 35899999999999998776
No 489
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=76.58 E-value=1.9 Score=50.04 Aligned_cols=25 Identities=32% Similarity=0.270 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQ 142 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~ 142 (1048)
...+.+.|.|+||||||+..|.|.-
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~iaG 46 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINAISG 46 (352)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3467899999999999999888753
No 490
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.55 E-value=3.2 Score=51.53 Aligned_cols=53 Identities=19% Similarity=0.343 Sum_probs=38.1
Q ss_pred HHHhhcCCC----CCchhHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 91 TAYRQKVMD----SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 91 ~~y~~~~~~----~PHiyaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
+.|+-+... ..|+-..-.+++ ...+...++|++|+.|.|||++++.+.+.|-+
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al---~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHAL---EQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHH---HhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 456544432 477765433333 23556789999999999999999999999865
No 491
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=76.55 E-value=2.6 Score=49.47 Aligned_cols=44 Identities=27% Similarity=0.517 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHccC
Q 001592 104 YAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGG 149 (1048)
Q Consensus 104 yaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~ 149 (1048)
|.+.++-+.+|..+. -.|+|.|..|||||+-+..+-.|++..+.
T Consensus 249 Y~L~dkl~eRL~era--eGILIAG~PGaGKsTFaqAlAefy~~~Gk 292 (604)
T COG1855 249 YGLSDKLKERLEERA--EGILIAGAPGAGKSTFAQALAEFYASQGK 292 (604)
T ss_pred cCCCHHHHHHHHhhh--cceEEecCCCCChhHHHHHHHHHHHhcCc
Confidence 678888888887654 46999999999999999999999998764
No 492
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.53 E-value=1.8 Score=46.17 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.2
Q ss_pred EEEEcCCCCCChhhHHHHHHHH
Q 001592 122 SIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 122 sIiisGESGaGKTet~k~il~y 143 (1048)
.+.|.|+||||||+..+.+.-.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999998888643
No 493
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=76.53 E-value=3.7 Score=46.02 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=26.0
Q ss_pred CchhHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHH
Q 001592 101 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQ 142 (1048)
Q Consensus 101 PHiyaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~ 142 (1048)
|-+=.+.....-.++-. .++.+++.|++|+|||...+.+++
T Consensus 15 pT~dt~r~~~ll~~l~~-~~~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 15 PTVDTVRYSYLLDLLLS-NGRPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp --HHHHHHHHHHHHHHH-CTEEEEEESSTTSSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH-cCCcEEEECCCCCchhHHHHhhhc
Confidence 33333433444344333 478999999999999987776553
No 494
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.52 E-value=2.1 Score=43.29 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=20.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAM 141 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il 141 (1048)
...+.+.|.|++|||||+..+.+.
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~ 46 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIA 46 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 356889999999999999888774
No 495
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=76.51 E-value=2 Score=47.86 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|++|||||+..|.|.-.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 31 PRGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988887643
No 496
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=76.49 E-value=1.8 Score=44.80 Aligned_cols=19 Identities=42% Similarity=0.655 Sum_probs=17.8
Q ss_pred EEEcCCCCCChhhHHHHHH
Q 001592 123 IIISGESGAGKTETAKFAM 141 (1048)
Q Consensus 123 IiisGESGaGKTet~k~il 141 (1048)
|+|+|-.|.|||+.|+.+-
T Consensus 3 I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred EEEeCCCCCchHHHHHHHH
Confidence 8999999999999999875
No 497
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=76.49 E-value=2.3 Score=44.16 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001592 120 NQSIIISGESGAGKTETAKFAMQYL 144 (1048)
Q Consensus 120 ~QsIiisGESGaGKTet~k~il~yL 144 (1048)
+...||+|++|+|||+....|+--|
T Consensus 19 ~g~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999997775444
No 498
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=76.46 E-value=3.4 Score=50.51 Aligned_cols=53 Identities=26% Similarity=0.369 Sum_probs=37.9
Q ss_pred HHHhhcCCC----CCchhHHHHHHHHHhhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001592 91 TAYRQKVMD----SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 146 (1048)
Q Consensus 91 ~~y~~~~~~----~PHiyaiA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 146 (1048)
..||-.... .+|+-..-..++ ...+-.++++++|+.|.|||++++.+.+.|..
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I---~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLAL---DNNRLAHAYLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHH---HcCCCCeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence 556655433 477643333332 34567889999999999999999999999864
No 499
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=76.46 E-value=2 Score=47.93 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001592 119 VNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 119 ~~QsIiisGESGaGKTet~k~il~y 143 (1048)
..+.+.|.|+||||||+..|.|.-.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999998888654
No 500
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=76.46 E-value=2.1 Score=45.41 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001592 118 GVNQSIIISGESGAGKTETAKFAMQY 143 (1048)
Q Consensus 118 ~~~QsIiisGESGaGKTet~k~il~y 143 (1048)
...+.+.|.|+||||||+..+.+.-.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45688999999999999988887543
Done!