Citrus Sinensis ID: 001593

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------105
MSAATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGKEDAGSSLQDSQDNWGKNKDACDNQANWKKSDSWDKGKKIIGNSTSSWGDKTAEKNEPDSWGKGKDGSSGSKSDWNSSALATENPTVSWGNASGGWTQQKGGNMDERSGWKKDDSGNQDQRSGWNKPKTFGADVGSSWNKQDGICSSDVQDGGSSWAKQDGGSSWGKKNGGSLMGKQDGGSSWGKQDGGSSLGKQDGGSSWGKQDGRSSLAKQDGGSSWGKQDRGSSWGKQDEGSSWSKRDGGSSWGKQDGGSSLAKQDGGSSWGKQDGGSSLGKQDGGSSWSKQDGGSSWGKQDGGSSWGKQDGGSSWGKQDGGSSWSKEPDQQHRKNGGSSWGNRDGGSSWSKQTDQQDNQEKPLESDGGRGSGGRWGQGGGQGGGQEVSDQYGRGSFDQGSEKGTGGMGDQGNGWNRRDKGTDWNKKCNWNSGSSDGDGNNGSGGWGKKSNWNSGSSGAGESKDTDWNKKSNLNCGSSDGDGNNSSGWDKKGNWNAGSSGDGESKDTDWNKKCNWNSGSNDGDGNNGSGWGKKSNWNSGSNVAGESNDSNWAKKGNWNSGSDDANQESSWGKKQGNWNSGSRDGHQESSWGKKSDWNSRSEDQPEPFNNRGSGNFRGRGGFRGRGDSDRGGFGGRGRTNRGGYGGRGRFDREGFGGRGGSDRGGFGGRGSSDRGGFGGRGRGRRDQGGGWNNNDSGDYKSFDSSQGVKNGGEWSRSNDGAGSWSQGGGTWKSGNSGASSQDGGWSSQGSGWNNSNTTNEVKGLSDQGGGWNKGAGGSAQAGGWGRQGSGWSSGTSTGNRGSNDSSIANDVKGPNDQVVGRNKGSNGSAQSGGWGNQGSGWSSGTGSGNKGSNDSNISNKGPNDQGGGWNKGSGGSAQSGAWGNQGSGWNGGTDSGNRGSNSDQPKSWNQSSVATDGGRSKDAGEGSSRGWGKTAGSSWEKGNDGSGKGGW
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
msaattsaegdrwnaggasagrsswpsfpvvgtslhaesnpanafgsgdngankdeedsawgskVNAIQNSSWGlaaaegknedcWNKAAVKNIesnngayggwgkedagsslqdsqdnwgknkdacdnqanwkksdswdkgkkiignstsswgdktaeknepdswgkgkdgssgsksdwnssalatenptvswgnasggwtqqkggnmdersgwkkddsgnqdqrsgwnkpktfgadvgsswnkqdgicssdvqdggsswakqdggsswgkknggslmgkqdggsswgkqdggsslgkqdggsswgkqdgrsslakqdggsswgkqdrgsswgkqdegsswskrdggsswgkqdggsslakqdggsswgkqdggsslgkqdggsswskqdggsswgkqdggsswgkqdggsswgkqdggsswskepdqqhrknggsswgnrdggsswskqtdqqdnqekplesdggrgsggrwgqgggqgggqevsdqygrgsfdqgsekgtggmgdqgngwnrrdkgtdwnkkcnwnsgssdgdgnngsggwgkksnwnsgssgageskdtdwnkksnlncgssdgdgnnssgwdkkgnwnagssgdgeskdtdwnkkcnwnsgsndgdgnngsgwgkksnwnsgsnvagesndsnwakkgnwnsgsddanqesswgkkqgnwnsgsrdghqesswgkksdwnsrsedqpepfnnrgsgnfrgrggfrgrgdsdrggfggrgrtnrggyggrgrfdregfggrggsdrggfggrgssdrggfggrgrgrrdqgggwnnndsgdyksfdssqgvknggewsrsndgagswsqgggtwksgnsgassqdggwssqgsgwnnsnttnevkglsdqgggwnkgaggsaqaggwgrqgsgwssgtstgnrgsndssiandvkgpndqvvgrnkgsngsaqsggwgnqgsgwssgtgsgnkgsndsnisnkgpndqgggwnkgsggsaqsgawgnqgsgwnggtdsgnrgsnsdqpkswnqssvatdggrskdagegssrgwgktagsswekgndgsgkggw
msaattsaegdrwnaggasagrssWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGKEDAGSSLQDSQDNWGknkdacdnqanwkksdswdkgkkiignstsswgdktaeknepdswgkgkdgssgskSDWNSSALAtenptvswgnasggwtqqkggnMDERSGWKKddsgnqdqrsgwnkPKTFGADVGSSWNKQDGICSSDVQDGGSSWAKQDGGSSWGKKNGGSLMGKQDGGSSWGKQDGGSslgkqdggsswgkqdgrsslakqdggsswgkqdrgsswgkqdegsswskrdggsswgkqdggsslakqdggsswgkqdGGSSLGKQDGGSSWSKQDGGSSWGKQDGGSSWGKQDGGSSWGKQDGgsswskepdqqhrknggsswgnrdGGSSWSKQTDQQDNQEKplesdggrgsggrWGQGGGQGGGQEVSDQYGRGSFDqgsekgtggmgdqgngwnrRDKGTDWNKKcnwnsgssdgdgnngsgGWGKKSNWNSGSSGAGESKDTDWNKKSNLNCGSSDGDGNNSSGWDKKGNWNAGSSGDGESKDTDWNKKCNWnsgsndgdgnngsGWGKKSNWNSGSNVAGESNDSNWAKKGNWNSGsddanqesswgkkqgnwnsgsrdghqesswgkksdwnsrsedqpepfnnrgsgnfrgrggfrgrgdsdrggfggrgrtnrggyggrgrfdregfggrggsdrggfggrgssdrggfggrgrgrrdqgggwnnndsgdyksFDSSQGVKNGGEWSRSNDGAGSWSQGGGTWKSGNSGASSQDGGWSSQGSGWNNSNTTNEVKGLSDQGGGWNKGAGGSAQAGGWGRQGSGWSSGTSTGNRGSNDSSIANDVKGPNDQVVGRNKgsngsaqsggwgnqGSGWSSGTGSGNKGSNDSNISNKGPNDQGGGWNKGSGGSAQSGAWGNQGSGWNGGTDSGNrgsnsdqpkswnqssvatdggrskdagegssrgwgktagsswekgndgsgkggw
MSAATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGKEDAGSSLQDSQDNWGKNKDACDNQANwkksdswdkgkkiiGNSTSSWGDKTAEKNEPdswgkgkdgssgsksdwnssALATENPTVSWGNASGGWTQQKGGNMDERSGWKKDDSGNQDQRSGWNKPKTFGADVGSSWNKQDGICSSDVQDGGSSWAKQDggsswgkknggsLMGKQDGGSSWGKQDGGSSLGKQDGGSSWGKQDGRSSLAKQDGGSSWGKQDRGSSWGKQDEGSSWSKRDGGSSWGKQDGGSSLAKQDGGSSWGKQDGGSSLGKQDGGSSWSKQDGGSSWGKQDGGSSWGKQDGGSSWGKQDGGSSWSKEPDQQHRKNGGSSWGNRDGGSSWSKQTDQQDNQEKPLESDggrgsggrwgqgggqgggqEVSDQYGRGSFDQGSEKGTGGMGDQGNGWNRRDKGTDWNKKCnwnsgssdgdgnngsggwgkksnwnsgssgAGESKDTDWNKKsnlncgssdgdgnnssgWDKKGNWNAGSSGDGESKDTDWNKKCnwnsgsndgdgnngsgwgkksnwnsgsnVAGESNDSNWAKKGNWNSGSDDANQESSWGKKQGNWNSGSRDGHQESSWGKKSDWNSRSEDQPEPFnnrgsgnfrgrggfrgrgdsdrggfggrgrtnrggyggrgrfdregfggrggsdrggfggrgssdrggfggrgrgrrdqgggwnnndSGDYKSFDSSQGVKNGGEWSRSNDGAGSWSQGGGTWKSGNsgassqdggwssqgsgwnnsnttnEVKGLSDQgggwnkgaggsaqaggwgrqgsgwssgtstgnrgsndssIANDVKGPNDQVVGRNKgsngsaqsggwgnqgsgwssgtgsgnkgsndsnisnkgPNDQgggwnkgsggsaqsgawgnqgsgwnggTDSGNRGSNSDQPKSWNQSSVATDGGRSKDAGEGSSRGWGKTAGSSWEKGNDGSGKGGW
*******************************************************************I**SSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGW********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
***********************SWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGKE***************NKDACDNQANWKKSDSWDKGKKIIGNSTSS********************************LATENPTVSWGNASGGWTQ************************GWNKPKTFGADVGSSWNKQDGICSSD******************KKNGGSL****************************************************************************************************************************************************************************************************************SDQYGRGSFDQGSEKGTGGMGDQGNGWNRRDKGTDWNKKCNWNSGSSDGDGNNGSGGWGKKSNW*************DWNKKSNLNCGSSDGDGNNSSGWDKKGNWNA***********DWNKKCNWNSGSNDGDGNNGSGWGKKSNWNSGSNVAGESNDSNWAKKGNWNS***********************************************FNNRGSGNFRGRGGFRGRGDSDRGGFGGRGRTNRGGYGGRGRFDREGFGGRGGSDRGGFGGRGSSDRGGFGGRGRGRRDQGGGWNNNDSGDYKSF***********************************************SGWNNSNTTNEVKGLSDQGGGWN******************************NDSSIANDVKGPNDQVVGRN*******************************DSNISNKGPNDQGGGWNKGSGGSAQSGAWGNQGSGWNGGTDS********************************************************
****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSAATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGKEDAGSSLQDSQDNWGKNKDACDNQANWKKSDSWDKGKKIIGNSTSSWGDKTAEKNEPDSWGKGKDGSSGSKSDWNSSALATENPTVSWGNASGGWTQQKGGNMDERSGWKKDDSGNQDQRSGWNKPKTFGADVGSSWNKQDGICSSDVQDGGSSWAKQDGGSSWGKKNGGSLMGKQDGGSSWGKQDGGSSLGKQDGGSSWGKQDGRSSLAKQDGGSSWGKQDRGSSWGKQDEGSSWSKRDGGSSWGKQDGGSSLAKQDGGSSWGKQDGGSSLGKQDGGSSWSKQDGGSSWGKQDGGSSWGKQDGGSSWGKQDGGSSWSKEPDQQHRKNGGSSWGNRDGGSSWSKQTDQQDNQEKPLESDGGRGSGGRWGQGGGQGGGQEVSDQYGRGSFDQGSEKGTGGMGDQGNGWNRRDKGTDWNKKCNWNSGSSDGDGNNGSGGWGKKSNWNSGSSGAGESKDTDWNKKSNLNCGSSDGDGNNSSGWDKKGNWNAGSSGDGESKDTDWNKKCNWNSGSNDGDGNNGSGWGKKSNWNSGSNVAGESNDSNWAKKGNWNSGSDDANQESSWGKKQGNWNSGSRDGHQESSWGKKSDWNSRSEDQPEPFNNRGSGNFRGRGGFRGRGDSDRGGFGGRGRTNRGGYGGRGRFDREGFGGRGGSDRGGFGGRGSSDRGGFGGRGRGRRDQGGGWNNNDSGDYKSFDSSQGVKNGGEWSRSNDGAGSWSQGGGTWKSGNSGASSQDGGWSSQGSGWNNSNTTNEVKGLSDQGGGWNKGAGGSAQAGGWGRQGSGWSSGTSTGNRGSNDSSIANDVKGPNDQVVGRNKGSNGSAQSGGWGNQGSGWSSGTGSGNKGSNDSNISNKGPNDQGGGWNKGSGGSAQSGAWGNQGSGWNGGTDSGNRGSNSDQPKSWNQSSVATDGGRSKDAGEGSSRGWGKTAGSSWEKGNDGSGKGGW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1048 2.2.26 [Sep-21-2011]
P82003274 Prothoracicostatic peptid N/A no 0.121 0.463 0.405 2e-08
>sp|P82003|PTSP_BOMMO Prothoracicostatic peptide OS=Bombyx mori PE=1 SV=2 Back     alignment and function desciption
 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/175 (40%), Positives = 91/175 (52%), Gaps = 48/175 (27%)

Query: 261 WAK---QDGGSSWGKKNGGSLMGKQDGGSSWGKQDGGSSLGKQDGGSSWGKQDGRSSLAK 317
           WAK   QD  S+WGK+        QD  S+WGK+      G QD  S+WGK+      A 
Sbjct: 52  WAKRAWQDMSSAWGKR------AWQDLNSAWGKR------GWQDLNSAWGKR------AW 93

Query: 318 QDGGSSWGK---QDRGSSWGKQDEGSSWSKR---DGGSSWGKQDGGSSLAKQDGGSSWGK 371
           QD  S+WGK   QD  S+WGK+D+  +  K+   D  S WGK+      A QD  S+WGK
Sbjct: 94  QDLNSAWGKRGWQDLNSAWGKRDDDEAMEKKSWQDLNSVWGKR------AWQDLNSAWGK 147

Query: 372 QDGGSSLGKQDGGSSWSKQ---DGGSSWGK---QDGGSSWGK---QDGGSSWGKQ 417
           +        QD  S+W K+   D  S WGK   QD  S+WGK   QD  S+WGK+
Sbjct: 148 R------AWQDLNSAWGKRGWNDISSVWGKRAWQDLNSAWGKRAWQDMSSAWGKR 196


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.302    0.127    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 538,005,401
Number of Sequences: 539616
Number of extensions: 31596153
Number of successful extensions: 274969
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 1661
Number of HSP's that attempted gapping in prelim test: 74335
Number of HSP's gapped (non-prelim): 62679
length of query: 1048
length of database: 191,569,459
effective HSP length: 128
effective length of query: 920
effective length of database: 122,498,611
effective search space: 112698722120
effective search space used: 112698722120
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 67 (30.4 bits)
Inhibits ecdysteroid biosynthesis in the prothoracic gland of fifth instar larvae, with maximum inhibition during the spinning stage. When administered to day 8 fifth instar larvae it produces a significant delay in the commencement spinning behavior.
Bombyx mori (taxid: 7091)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1048
156365737226 predicted protein [Nematostella vectensi 0.200 0.929 0.382 2e-28
156349300235 predicted protein [Nematostella vectensi 0.200 0.893 0.377 1e-27
297806403 1476 hypothetical protein ARALYDRAFT_487210 [ 0.191 0.136 0.447 7e-21
15237667 1493 kow domain-containing transcription fact 0.166 0.116 0.480 1e-19
255586801 1547 suppressor of ty, putative [Ricinus comm 0.261 0.177 0.376 4e-19
374583946708 pseudouridine synthase Rsu [Leptonema il 0.203 0.300 0.302 7e-19
224109844 1697 predicted protein [Populus trichocarpa] 0.169 0.104 0.467 2e-17
224100723 1853 hypothetical protein POPTRDRAFT_765239 [ 0.173 0.098 0.420 1e-15
2960859691065 unnamed protein product [Vitis vinifera] 0.174 0.171 0.359 3e-09
156385476215 predicted protein [Nematostella vectensi 0.194 0.948 0.350 3e-09
>gi|156365737|ref|XP_001626800.1| predicted protein [Nematostella vectensis] gi|156213689|gb|EDO34700.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information
 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/212 (38%), Positives = 132/212 (62%), Gaps = 2/212 (0%)

Query: 242 SWNKQDGICSSDVQDGGSSWAKQDGGSSWGKKNGGSLMGKQDGGSSWGKQDGGSSLGKQD 301
           SW  +DGI S  ++DG +SWA +D  +SW  K+G +    +DG +SW  +DG +S   +D
Sbjct: 4   SWAIKDGIHSWAIKDGINSWAIKDVINSWAIKDGINSWAIKDGINSWAFKDGINSWAIKD 63

Query: 302 GGSSWGKQDGRSSLAKQDGGSSWGKQDRGSSWGKQDEGSSWSKRDGGSSWGKQDGGSSLA 361
           G +SW  +DG +S A + G +SW  +D  +SW  +D  + W+ +DG +SW  +DG +S A
Sbjct: 64  GINSWAIKDGINSWAIKYGINSWAIKDGINSWAIKDGINFWAIKDGINSWAIKDGINSWA 123

Query: 362 KQDGGSSWGKQDGGSSLGKQDGGSSWSKQDGGSSWGKQDGGSSWGKQDGGSSWGKQDGGS 421
            +DG +SW  +DG +S   +DG +SW+ +DG +SW  +DG +SW  +DG +SW  +DG +
Sbjct: 124 IKDGINSWAIKDGINSWAIKDGINSWAIKDGINSWAIKDGINSWAIKDGINSWAIKDGIN 183

Query: 422 SWSKE--PDQQHRKNGGSSWGNRDGGSSWSKQ 451
            W+ +   +    K+G +SW  +DG +SW+ +
Sbjct: 184 YWAIKDGINSWAIKDGINSWAIKDGINSWAIK 215

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota
>gi|156349300|ref|XP_001622001.1| predicted protein [Nematostella vectensis] gi|156208385|gb|EDO29901.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information
>gi|297806403|ref|XP_002871085.1| hypothetical protein ARALYDRAFT_487210 [Arabidopsis lyrata subsp. lyrata] gi|297316922|gb|EFH47344.1| hypothetical protein ARALYDRAFT_487210 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15237667|ref|NP_196049.1| kow domain-containing transcription factor 1 [Arabidopsis thaliana] gi|332003341|gb|AED90724.1| kow domain-containing transcription factor 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255586801|ref|XP_002534015.1| suppressor of ty, putative [Ricinus communis] gi|223525980|gb|EEF28368.1| suppressor of ty, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|374583946|ref|ZP_09657038.1| pseudouridine synthase Rsu [Leptonema illini DSM 21528] gi|373872807|gb|EHQ04801.1| pseudouridine synthase Rsu [Leptonema illini DSM 21528] Back     alignment and taxonomy information
>gi|224109844|ref|XP_002315331.1| predicted protein [Populus trichocarpa] gi|222864371|gb|EEF01502.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224100723|ref|XP_002311988.1| hypothetical protein POPTRDRAFT_765239 [Populus trichocarpa] gi|222851808|gb|EEE89355.1| hypothetical protein POPTRDRAFT_765239 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296085969|emb|CBI31410.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|156385476|ref|XP_001633656.1| predicted protein [Nematostella vectensis] gi|156220729|gb|EDO41593.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1048
TAIR|locus:21799791493 KTF1 "AT5G04290" [Arabidopsis 0.459 0.322 0.340 1.8e-66
DICTYBASE|DDB_G02899011143 DDB_G0289901 "unknown" [Dictyo 0.410 0.376 0.247 7.6e-24
FB|FBgn0029518193 CG13376 [Drosophila melanogast 0.110 0.601 0.335 8.2e-19
UNIPROTKB|P82003274 P82003 "Prothoracicostatic pep 0.127 0.489 0.412 8.4e-19
DICTYBASE|DDB_G02906851081 DDB_G0290685 "unknown" [Dictyo 0.450 0.436 0.247 9.7e-19
UNIPROTKB|Q9Y871536 ESTA "Feruloyl esterase B" [Pi 0.195 0.382 0.334 1.4e-17
UNIPROTKB|Q9NZW41301 DSPP "Dentin sialophosphoprote 0.620 0.499 0.171 1.7e-17
MGI|MGI:96696743 Krt9 "keratin 9" [Mus musculus 0.231 0.327 0.328 2.9e-16
FB|FBgn0038492 2112 Mur89F "Mucin related 89F" [Dr 0.425 0.211 0.225 5.2e-14
TAIR|locus:22063301647 GTB1 "global transcription fac 0.139 0.088 0.363 1.1e-15
TAIR|locus:2179979 KTF1 "AT5G04290" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 610 (219.8 bits), Expect = 1.8e-66, Sum P(3) = 1.8e-66
 Identities = 196/576 (34%), Positives = 245/576 (42%)

Query:     3 AATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWG 62
             A T S  GD  +A    A  SSW       TS  A+       G G +G NK +EDS WG
Sbjct:   783 AGTVSGWGDT-SASNVEA--SSWEK-QGASTSNVADLGSWGTHG-GSSGGNKQDEDSVWG 837

Query:    63 SKVNAIQNS------SWGLAAAEGKNEDCW-NKAAVKNIESNNGAYGGWGKEDAGSSLQD 115
                 A ++S      SWG        E  W NK    +    +G    WG++D GS   +
Sbjct:   838 KLCEASESSQKKEESSWGKKGGSD-GESSWGNKDGNSSASKKDGV--SWGQQDKGSD--E 892

Query:   116 SQDNWGKNKDACDNQANXXXXXXXXXXXXXXGNSTSSWGDKTAEKNEPXXXXXXXXXXXX 175
             S     K   A  NQ                  S     D  A                 
Sbjct:   893 S-----KGGSAWSNQCGDFGSGKKKDGSSGWNKSAE---DSNANSKGVPDWGQPNDGSSW 944

Query:   176 XXXXXXXXALATENPTVSWGNASGGWTQQKGGNMDERSGWKKDDSGNQ-----DQRSGWN 230
                     +   ++   SWG    G     G +  ++   +KDD G+      D  S W 
Sbjct:   945 GKKGDGAASWGKKDDGGSWGKKDDGNKDDGGSSWGKKDDGQKDDGGSSWEKKFDGGSSWG 1004

Query:   231 KPKTFGADVGSSWNKQD--GICSSDVQDGGSSWAKQDXXXXXXXXXXXXLMGKQDGGSSW 288
             K      D GSSW K+D  G       DGGSSW K+D               K DG SSW
Sbjct:  1005 KKD----DGGSSWGKKDDGGSLWGKKDDGGSSWGKEDDGGSLWGK-------KDDGESSW 1053

Query:   289 GKQDGG-SSLGKQD-GGSSWGKQD------------GRSSLAKQDGGSSWGKQD--RGSS 332
             GK+D G SS GK+D GGSSWGK+D            GR    ++ GG   G+    RGSS
Sbjct:  1054 GKKDDGESSWGKKDDGGSSWGKKDEGGYSEQTFDRGGRGFGGRRGGGRRGGRDQFGRGSS 1113

Query:   333 WGKQDEGSSWSKRDGGSSWGKQDGGSSLAKQDGGSSWGKQD---GGSSLGKQDGG--SSW 387
             +G  ++ + WSK  GGSSWGKQDG        GGSSWGK++   GGSS GKQD G  SSW
Sbjct:  1114 FGNSEDPAPWSKPSGGSSWGKQDGDG------GGSSWGKENDAGGGSSWGKQDNGVGSSW 1167

Query:   388 SKQD----GGSSWGKQD---GGSSWGKQDGG---SSWGKQDGGSSWSKEPDQQHRKNGGS 437
              KQ+    GGSSWGKQ+   GGSSWGKQD G   SSWGKQDGG        +Q+  +GGS
Sbjct:  1168 GKQNDGSGGGSSWGKQNDAGGGSSWGKQDSGGDGSSWGKQDGGGDSGSAWGKQNNTSGGS 1227

Query:   438 SWGNRD---GGSSWSKQTDQQDNQE--KPLESDXXXXXXXXXXXXXXXXXXXEVSDQYGR 492
             SWG +    GGSSW KQ          K                        + +D  G 
Sbjct:  1228 SWGKQSDAGGGSSWGKQDGGGGGSSWGKQDGGGGSGSAWGKQNETSNGSSWGKQNDSGGG 1287

Query:   493 GSFDQGSEKGTGGMGDQGNGWNRRDKG---TDWNKK 525
              S+  G + G GG    G+ W +++ G   + W K+
Sbjct:  1288 SSW--GKQDGGGG----GSSWGKQNDGGGGSSWGKQ 1317
GO:0000166 "nucleotide binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006306 "DNA methylation" evidence=IMP
GO:0030422 "production of siRNA involved in RNA interference" evidence=IMP
DICTYBASE|DDB_G0289901 DDB_G0289901 "unknown" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0029518 CG13376 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|P82003 P82003 "Prothoracicostatic peptide" [Bombyx mori (taxid:7091)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290685 DDB_G0290685 "unknown" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y871 ESTA "Feruloyl esterase B" [Piromyces equi (taxid:99929)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NZW4 DSPP "Dentin sialophosphoprotein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:96696 Krt9 "keratin 9" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0038492 Mur89F "Mucin related 89F" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2206330 GTB1 "global transcription factor group B1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1048
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 5e-06
PRK12678 672 PRK12678, PRK12678, transcription termination fact 6e-06
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 2e-05
PRK12678 672 PRK12678, PRK12678, transcription termination fact 7e-05
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 3e-04
PRK12678 672 PRK12678, PRK12678, transcription termination fact 6e-04
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 0.001
PRK12678 672 PRK12678, PRK12678, transcription termination fact 0.002
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information 
 Score = 49.0 bits (117), Expect = 5e-06
 Identities = 25/60 (41%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 714 RGRGGFRGRGDSDRGGFGGRGRTNRGGYGGRGRFDREGFGGRGGSDRGGFGGRGSSDRGG 773
              GGF G     RGG GG GR   G  GGRG     G G   G   GG GG G    G 
Sbjct: 1   GMGGGFGGGRGGGRGGGGGGGRGGGGRGGGRGG----GRGRGRGGGGGGRGGGGGGGPGK 56

Length = 293
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1048
KOG09211282 consensus Dosage compensation complex, subunit MLE 96.38
PLN03134144 glycine-rich RNA-binding protein 4; Provisional 96.36
KOG3973465 consensus Uncharacterized conserved glycine-rich p 96.24
KOG3262215 consensus H/ACA small nucleolar RNP component GAR1 95.29
TIGR01659346 sex-lethal sex-lethal family splicing factor. This 95.06
KOG3973465 consensus Uncharacterized conserved glycine-rich p 94.92
KOG3262215 consensus H/ACA small nucleolar RNP component GAR1 94.35
PTZ00146293 fibrillarin; Provisional 92.84
TIGR01661352 ELAV_HUD_SF ELAV/HuD family splicing factor. These 92.72
KOG4210285 consensus Nuclear localization sequence binding pr 86.13
KOG0122270 consensus Translation initiation factor 3, subunit 86.03
TIGR01659346 sex-lethal sex-lethal family splicing factor. This 85.2
TIGR01661352 ELAV_HUD_SF ELAV/HuD family splicing factor. These 84.92
PLN03213 759 repressor of silencing 3; Provisional 83.55
KOG0116419 consensus RasGAP SH3 binding protein rasputin, con 82.6
COG0724306 RNA-binding proteins (RRM domain) [General functio 80.77
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information 
Probab=96.38  E-value=0.017  Score=70.04  Aligned_cols=11  Identities=45%  Similarity=0.948  Sum_probs=4.9

Q ss_pred             CCCCCCCCCCC
Q 001593          748 DREGFGGRGGS  758 (1048)
Q Consensus       748 dRGGFgGRGgG  758 (1048)
                      .||||++-++|
T Consensus      1231 srgGfrnnggG 1241 (1282)
T KOG0921|consen 1231 SRGGFRNNGGG 1241 (1282)
T ss_pred             cCCccccCCCC
Confidence            34455444433

>PLN03134 glycine-rich RNA-binding protein 4; Provisional Back     alignment and domain information
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown] Back     alignment and domain information
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01659 sex-lethal sex-lethal family splicing factor Back     alignment and domain information
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown] Back     alignment and domain information
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00146 fibrillarin; Provisional Back     alignment and domain information
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor Back     alignment and domain information
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription] Back     alignment and domain information
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01659 sex-lethal sex-lethal family splicing factor Back     alignment and domain information
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor Back     alignment and domain information
>PLN03213 repressor of silencing 3; Provisional Back     alignment and domain information
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms] Back     alignment and domain information
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1048
d1x0fa175 Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s 97.74
d1uawa_77 Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} 97.73
d2cq4a1101 RNA binding protein 23 {Human (Homo sapiens) [TaxI 97.7
d2cqga190 TAR DNA-binding protein 43, TDP-43 {Human (Homo sa 97.59
d1x4ba1103 Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu 97.58
d1whwa_99 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 97.51
d2cqda1103 RNA-binding region containing protein 1 {Human (Ho 97.48
d1hd0a_75 Heterogeneous nuclear ribonucleoprotein d0 {Human 97.45
d2cqba189 Peptidyl-prolyl cis-trans isomerase E, N-terminal 97.43
d1l3ka184 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 97.27
d1fxla285 Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 97.09
d1x5ua193 Splicing factor 3B subunit 4 {Human (Homo sapiens) 97.08
d2cpha194 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 97.07
d1cvja180 Poly(A)-binding protein {Human (Homo sapiens) [Tax 97.07
d2u2fa_85 Splicing factor U2AF 65 KDa subunit {Human (Homo s 97.06
d1p1ta_104 Cleavage stimulation factor, 64 kda subunit {Human 96.99
d1rk8a_88 RNA-binding protein 8 {Fruit fly (Drosophila melan 96.98
d2cq0a190 Eukaryotic translation initiation factor 3 subunit 96.97
d1b7fa285 Sex-lethal protein {Drosophila melanogaster [TaxId 96.97
d2cqca183 Arginine/serine-rich splicing factor 10 {Human (Ho 96.96
d1h2vz_93 CBP20, 20KDa nuclear cap-binding protein {Human (H 96.81
d1u6fa1139 RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId 96.8
d1b7fa182 Sex-lethal protein {Drosophila melanogaster [TaxId 96.67
d1x5ta183 Splicing factor 3B subunit 4 {Human (Homo sapiens) 96.66
d2cpza1102 CUG triplet repeat RNA-binding protein 1 {Human (H 96.65
d1x4ha198 RNA-binding protein 28 {Mouse (Mus musculus) [TaxI 96.53
d2msta_75 Neural RNA-binding protein Musashi-1 {Mouse (Mus m 96.44
d1x4ea172 RNA-binding motif, single-stranded-interacting pro 96.34
d1fxla182 Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 96.26
d2ghpa386 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 96.13
d1no8a_78 Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1 96.1
d1x5sa190 Cold-inducible RNA-binding protein {Human (Homo sa 95.93
d1l3ka279 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 95.88
d1zh5a285 Lupus LA protein {Human (Homo sapiens) [TaxId: 960 95.78
d2f9da1114 Pre-mRNA branch site protein p14 {Human (Homo sapi 95.75
d1u1qa_183 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 95.64
d2cpfa185 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 95.64
d1wg5a_104 Heterogeneous nuclear ribonucleoprotein H' {Human 95.54
d1wi8a_104 Eukaryotic translation initiation factor 4B {Human 95.27
d1weza_102 Heterogeneous nuclear ribonucleoprotein H' {Human 95.25
d1cvja289 Poly(A)-binding protein {Human (Homo sapiens) [Tax 95.05
d2cqia190 Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 95.01
d2cpya1103 RNA-binding protein 12 {Human (Homo sapiens) [TaxI 94.96
d2cpea1101 RNA-binding protein EWS {Human (Homo sapiens) [Tax 94.88
d2cpia189 E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc 94.59
d2ghpa181 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 94.37
d2cq3a193 RNA-binding protein 9 {Human (Homo sapiens) [TaxId 94.37
d1u1qa_183 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 94.19
d1wela1112 RNA-binding protein 12 {Human (Homo sapiens) [TaxI 94.07
d1wf0a_88 TAR DNA-binding protein 43, TDP-43 {Human (Homo sa 94.04
d1fjeb191 Nucleolin {Golden hamster (Mesocricetus auratus) [ 93.89
d2disa196 Hypothetical protein FLJ20273 {Human (Homo sapiens 93.64
d2ghpa275 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 93.23
d1x5oa1101 RNA-binding motif, single-stranded-interacting pro 93.02
d2cpxa1102 RNA-binding protein 41, RBM41 {Human (Homo sapiens 92.83
d1owxa_113 Lupus LA protein {Human (Homo sapiens) [TaxId: 960 91.95
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_104 U2 91.85
d1x4ga196 Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 91.08
d2cqpa186 RNA-binding protein 12 {Mouse (Mus musculus) [TaxI 90.85
d1whxa_111 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 89.97
d3begb187 Splicing factor, arginine/serine-rich 1, SFRS1 {Hu 89.32
d1u2fa_90 Splicing factor U2AF 65 KDa subunit {Human (Homo s 87.41
d2adba1108 Polypyrimidine tract-binding protein {Human (Homo 86.47
d2cpja186 Non-POU domain-containing octamer-binding protein, 85.2
d1x4aa195 Splicing factor, arginine/serine-rich 1, SFRS1 {Hu 84.3
d1whya_97 Putative RNA-binding protein 15B, Rbm15b {Mouse (M 80.45
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=2e-06  Score=45.64  Aligned_cols=42  Identities=12%  Similarity=-0.072  Sum_probs=39.2

Q ss_pred             CCCCCCCCCCCCC--CCCCCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             8988876445346--55687301106899888878888877789
Q 001593          657 SGSDDANQESSWG--KKQGNWNSGSRDGHQESSWGKKSDWNSRS  698 (1048)
Q Consensus       657 SLSFDANEDSVWe--se~GSI~SVRIPTDqESG~pKGFGYv~~~  698 (1048)
                      -|+++++++.+.+  ++||.|..|+||.|++|+.+|||+|+.+.
T Consensus         6 nLp~~~te~~l~~~F~~~G~I~~v~i~~d~~t~~~rG~~FV~f~   49 (75)
T d1x0fa1           6 GLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK   49 (75)
T ss_dssp             SCCSSCCHHHHHHHHHHHSCEEEEECCCCTTTCCTTCCEEEEES
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf             89998989999999998587652122446554566528999978
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Back     information, alignment and structure
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure