Query 001594
Match_columns 1048
No_of_seqs 122 out of 162
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 04:41:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001594.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001594hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1049 Polyadenylation factor 100.0 4.1E-41 9E-46 369.9 23.9 455 136-724 24-536 (538)
2 PF05182 Fip1: Fip1 motif; In 99.9 1.2E-24 2.6E-29 176.2 3.8 45 346-390 1-45 (45)
3 COG5213 FIP1 Polyadenylation f 99.8 6E-22 1.3E-26 202.4 3.3 55 342-396 115-169 (266)
4 KOG0921 Dosage compensation co 83.2 5.2 0.00011 50.1 9.3 109 186-328 1159-1267(1282)
5 KOG1924 RhoA GTPase effector D 27.4 3E+02 0.0064 35.3 9.3 42 336-379 611-654 (1102)
6 KOG1049 Polyadenylation factor 26.7 44 0.00095 40.0 2.5 37 413-450 200-236 (538)
7 PF11709 Mit_ribos_Mrp51: Mito 25.2 2.8E+02 0.006 31.0 8.0 85 293-392 48-162 (312)
8 PF07067 DUF1340: Protein of u 21.9 41 0.00089 36.2 0.9 28 365-392 103-130 (236)
9 PHA02669 hypothetical protein; 15.0 1.7E+02 0.0037 31.2 3.5 42 142-200 73-114 (210)
10 PF04618 HD-ZIP_N: HD-ZIP prot 10.9 8.7E+02 0.019 24.2 6.7 8 1-8 2-9 (111)
No 1
>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=100.00 E-value=4.1e-41 Score=369.88 Aligned_cols=455 Identities=22% Similarity=0.236 Sum_probs=294.4
Q ss_pred ccCCcccccccCCCccCceEEeccCCCCCccccCCCCCCCCCCCCCceEEEecCCCCCccCcchhhcccCCCCCcccCCC
Q 001594 136 EAGEEAEDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGE 215 (1048)
Q Consensus 136 ~~~~~~~ddWdSDSeDdlqiVlNd~~~~p~~~~r~~gdddddeDgd~lvivadg~~~~~~~~~~Ee~~Wg~~~a~~~~G~ 215 (1048)
.+.++.++.|+.|.|+.+++|++.+.-+.|+..- |-+|.+|++.++||++.+.+ ..+++++|.++. ..-|.
T Consensus 24 ~~e~~~~~~e~~d~ee~~~~~~p~e~~~~~~~~~---~~~d~dDd~~~~~~~e~d~~----~~d~~s~~~~d~--~~~~~ 94 (538)
T KOG1049|consen 24 EDEAETGASEDPDIEERVKSVSPGESKKFDVVAD---DSDDCDDDDEEMESLEPDPE----SLDSDSDDDEDS--SLKDE 94 (538)
T ss_pred ccccccccccCccHHHhhcccCCccccccccccc---ccccCCchhhhhccCCCCcc----cccccccchhcc--ccCCc
Confidence 4556778899999999999999999876554211 12444566667777765555 789999998871 11111
Q ss_pred CCcccccCcccccCcchhhhhhhcccccccccCCcccCCCCCCcceeeCCCCCCCCCCcccCCCCCCCccCCCccCCCCC
Q 001594 216 GGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAA 295 (1048)
Q Consensus 216 ~gaerk~ggge~~~~~~~~~g~a~~~pkiGys~~g~~~hp~HsqfKYVRPga~~~pga~~~~~~g~pgq~rp~~~~~~~a 295 (1048)
++ .+ . ...++ |||.++.+..+++...+...+.+|+
T Consensus 95 ~~--------~~-~-----~~~~~---------------------k~~~~~~a~~~~~~~~v~i~t~~~~---------- 129 (538)
T KOG1049|consen 95 DD--------VA-V-----DESAV---------------------KTSDDQEASEGSSDQNVTIRTVKAT---------- 129 (538)
T ss_pred cc--------cc-c-----ccccc---------------------cccCccccccCCCcceeeecccccc----------
Confidence 11 11 0 00000 8999999999998888777777766
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCccccccCCCCCcceeecCCCcCCCCCCCCCCCCcccccCCCCH
Q 001594 296 GRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNE 375 (1048)
Q Consensus 296 GrgrGdWrp~g~k~~~~~~k~fh~G~g~~~~G~~~aGrG~eF~lp~~k~IfdvDiD~~eeKPWRkPGADISDYFNYGFnE 375 (1048)
.+++.+|++|. +|.-.+.|.. ...+||+||||.|++||||+|||||||||||||||
T Consensus 130 -------------~~~a~~kg~~~-----~~dld~~g~i------n~v~I~evDldsfEdKPWRkPGADiSDYFNYGFNE 185 (538)
T KOG1049|consen 130 -------------NKSAAPKGKMS-----QVDLDTPGTI------NGVPIFEVDLDSFEDKPWRKPGADISDYFNYGFNE 185 (538)
T ss_pred -------------ccccccccCcc-----cccccCCccc------CCccceeecHHHhccCcccCCCccchhhhccccCH
Confidence 12223565653 3443333333 22389999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcchhhhhhhccCC---CCCCCceeeecCCCCCCCCCCCCCCCCcCCCC-CceEEeeccCccCC
Q 001594 376 ESWKDYCKQLEQHRLETTMQSKIRVYESGR---DQPTGRAIQVEGGSGERLPSIDTRPPRIRDSD-AIIEIVCQDSVDDD 451 (1048)
Q Consensus 376 ~TWk~Yc~kq~qlR~E~tmqsKI~~yEsg~---~lptGRaIQVEgg~geR~PS~D~R~PR~rDSD-~IIeIv~qdS~Dd~ 451 (1048)
+||++||++|++||.+|++...+.+++..+ .+++.-.||..+ -.|.+ .... +-..++|.++.--
T Consensus 186 eTWk~YC~rQkrlrie~~~~~~~~~~e~~r~~~~~~~~l~~q~~g----~~p~~-------~~ts~~~~~~~~~~~~~~- 253 (538)
T KOG1049|consen 186 ETWKAYCERQKRLRIEFAGGGLERTTEPLRRQRDLFGELKIQIPG----PGPVG-------NLTSRTSVGARGIDSNQR- 253 (538)
T ss_pred HHHHHHHHHHhhhhhhhcccccccccccccccccCcchhhhccCC----CCCcc-------ccCCccccccccCCCCCC-
Confidence 999999999999999999988888887654 344444444332 11111 0000 0111112111110
Q ss_pred CCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccccccccchhhhhhhhccccccccccccCCCCCCCCCCCCCCCC--
Q 001594 452 SSAGNGDRDNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEA-- 529 (1048)
Q Consensus 452 ~s~~n~~q~n~~~~~d~r~~~~~~e~~M~~~~~ey~~~f~q~y~~r~~e~~gr~~p~~ns~~~n~~~gd~~lp~~~~~-- 529 (1048)
.++-+.+.+...-...+ .-..+..|+.|+-..++-.+++..+..++.
T Consensus 254 --------------------------~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~r~g~~~~~~~~~~~p 302 (538)
T KOG1049|consen 254 --------------------------PANDVPPSGGGRPLMSV-----TGSRPAEPSSNSQAPGARSGSGEPSGMSEPPP 302 (538)
T ss_pred --------------------------CCCCCCCCCCCcccccc-----cCCcCcCCCCCccCccccCCCCCCCCCCCCCC
Confidence 00000011111101111 111345566666555555555543333332
Q ss_pred -----CCCCCCCCCCCCCCCCCCCCCCchhhccCCCCCCCCCCCCCCCCCchhhcccccchhhhhhhccCCCCCC-CCCc
Q 001594 530 -----PLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPL-SSPV 603 (1048)
Q Consensus 530 -----p~~~r~gsrg~~~~~~g~~~gsph~~r~~~~r~~~~Sp~~tP~Q~~~~k~~~d~q~eEs~eSmdgkhsp~-sSP~ 603 (1048)
|-++....-|..++-| .++ -++....++.+|.|.......|..+.|+...|.++..|.. ..|.
T Consensus 303 ~~~a~p~~~~~~~~~~~~sp~-~~~----------t~Pg~~~ap~~p~~~~~~p~s~g~~~e~~~~s~~~~~s~~~~p~g 371 (538)
T KOG1049|consen 303 SMEAGPSQKERLPPGPEESPP-SNE----------TAPGASEAPSSPGDSGPPPSSLGPNEESDDYSTESGKSARTDPPG 371 (538)
T ss_pred CcCCCCChhhccCCCcCCCCC-cCC----------CCCCcccCCCCCCCCCCCccccCcCCCCCCcccccccccccCCCc
Confidence 2222222223222211 111 1345566777888888888888888888888877777765 6666
Q ss_pred ccccccccccccccc-----------------------------c---------cccc-----ccc-C-cchhhcccccc
Q 001594 604 IVRDARELSVEHKDA-----------------------------V---------HDEL-----WRE-G-DEEVMQDRRST 638 (1048)
Q Consensus 604 ~v~dare~S~e~kD~-----------------------------~---------kDqk-----~~d-~-eEeV~qD~~S~ 638 (1048)
.|+.... ++--.+. + ++.+ .++ + +|-|+++++|.
T Consensus 372 ~~~~pp~-~~h~~~~~~~s~~~~~~~~~~~m~~~~~~~~~~~r~~~rs~~~r~~~~~s~~~~~~rd~~~~~~~~~~~~s~ 450 (538)
T KOG1049|consen 372 EVRPPPQ-SAHLAAPEGPSPKRGESSPDMYMRHRSPHSRSRDRDNGRSGYRRRSRSRSPTRDPGRDKKPGELVGLGRDSS 450 (538)
T ss_pred ccCCCcc-ccccccCCCCCCCccccCccccccCCCcccccccccccccchhhhhhcccCCCCcccCCCCCcccccccccC
Confidence 6666533 2221111 1 0000 112 2 79999999999
Q ss_pred cCCCCCCCCCccchhhhhhhhhhhHHHhhhhhhhc-ccCCCCCCCCCCCCCcccccCCCCCccchhhccCCccccccccc
Q 001594 639 RMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAI-GREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRRED 717 (1048)
Q Consensus 639 r~g~~rrh~d~~e~~~~RKdrD~rqemER~r~~~~-gRe~syp~rd~dp~~~~~~~~~~~~~Dr~kere~~d~~Wqrred 717 (1048)
+.-.+++|...+.....||.+|.-.||||.|+.+. +++..-+||-||-..... ..+.+.|++.|+.+.....|..+..
T Consensus 451 ~~~~~~~~~~~~~~~~~rk~~d~~REr~~rr~~~~~~~d~~~~~r~~~~~~e~s-~~r~~~~~kskr~~~~~~~~s~~~~ 529 (538)
T KOG1049|consen 451 KRWRNGPPRTLERDETSRKKVDRDREREHRRKESSVDKDRHREHRRWDENEESS-SGRREDHSKSKRSGTHLEEYSSRSS 529 (538)
T ss_pred hhhhccCCCccccccccccccchhhHHHHHHhhhccchhhcchhhhhhhccccc-cccchhcchhhhccccchhhccCCC
Confidence 99999999999999999999999999999999998 788889999999887666 6678999999999999999999999
Q ss_pred Ccccccc
Q 001594 718 EPYSRKN 724 (1048)
Q Consensus 718 d~~~rr~ 724 (1048)
..++++.
T Consensus 530 ~~e~~~~ 536 (538)
T KOG1049|consen 530 FDESQRN 536 (538)
T ss_pred ccccccc
Confidence 9998875
No 2
>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []. This region of Fip1 is needed for the interaction with the Yth1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor [].
Probab=99.90 E-value=1.2e-24 Score=176.17 Aligned_cols=45 Identities=62% Similarity=1.359 Sum_probs=43.6
Q ss_pred eeecCCCcCCCCCCCCCCCCcccccCCCCHHHHHHHHHHHHHhhh
Q 001594 346 FEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRL 390 (1048)
Q Consensus 346 fdvDiD~~eeKPWRkPGADISDYFNYGFnE~TWk~Yc~kq~qlR~ 390 (1048)
|+||||.+++||||+|||||||||||||||+||++||++|+++|+
T Consensus 1 fd~d~d~~~~KPWr~pGaDisDyFNYGf~E~tW~~Y~~kq~~~R~ 45 (45)
T PF05182_consen 1 FDVDIDSFEEKPWRKPGADISDYFNYGFNEETWREYCKKQRQLRK 45 (45)
T ss_pred CCcChhhhccCCccCCCCChhhhcCCCCCHHHHHHHHHHHHHhhC
Confidence 789999999999999999999999999999999999999999984
No 3
>COG5213 FIP1 Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=99.84 E-value=6e-22 Score=202.39 Aligned_cols=55 Identities=40% Similarity=1.003 Sum_probs=51.7
Q ss_pred CCcceeecCCCcCCCCCCCCCCCCcccccCCCCHHHHHHHHHHHHHhhhhhcchh
Q 001594 342 HKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQS 396 (1048)
Q Consensus 342 ~k~IfdvDiD~~eeKPWRkPGADISDYFNYGFnE~TWk~Yc~kq~qlR~E~tmqs 396 (1048)
++.||+|||+.|.+||||+|||||||||||||||+||++||.+|++||..|+.+.
T Consensus 115 g~nI~~iD~Esf~dKPWrkPGAdiSDYFNYGFnEfTW~eYc~~Q~~l~~d~~p~~ 169 (266)
T COG5213 115 GQNILDIDIESFKDKPWRKPGADISDYFNYGFNEFTWKEYCHMQEKLQQDYNPRE 169 (266)
T ss_pred CcceeeechhhhccCcccCCCcchhhhhhccchhhHHHHHHHHHHHhhhccCHHH
Confidence 4589999999999999999999999999999999999999999999999987654
No 4
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=83.19 E-value=5.2 Score=50.15 Aligned_cols=109 Identities=25% Similarity=0.274 Sum_probs=53.2
Q ss_pred EecCCCCCccCcchhhcccCCCCCcccCCCCCcccccCcccccCcchhhhhhhcccccccccCCcccCCCCCCcceeeCC
Q 001594 186 VADADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRP 265 (1048)
Q Consensus 186 vadg~~~~~~~~~~Ee~~Wg~~~a~~~~G~~gaerk~ggge~~~~~~~~~g~a~~~pkiGys~~g~~~hp~HsqfKYVRP 265 (1048)
+-||+.| +-|+--|||--. -.+++--|.-+--|||-. =|||+.||+.|++--- +|
T Consensus 1159 ygDGp~P----PKmaryDnG~~~-n~SgyRRGgssysgGGYG----------------ggys~gGygsGGYGgs----a~ 1213 (1282)
T KOG0921|consen 1159 YGDGPGP----PKMARYDNGPSN-NNSGYRRGGSSYSGGGYG----------------GGYSGGGYGSGGYGGS----AP 1213 (1282)
T ss_pred ccCCCCC----cccccccCCCcc-CccccccCCCCCCCCCcC----------------CCCCCCCcCCCCCCCC----CC
Confidence 4678888 678999999421 111222221122222111 1577777766654322 22
Q ss_pred CCCCCCCCcccCCCCCCCccCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCc
Q 001594 266 GAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGV 328 (1048)
Q Consensus 266 ga~~~pga~~~~~~g~pgq~rp~~~~~~~aGrgrGdWrp~g~k~~~~~~k~fh~G~g~~~~G~ 328 (1048)
++. +++-+++++|--| .+.+-|-|-|.||.+..++-. ..-.||.-|+|-.++|+
T Consensus 1214 ~~~--~~~Gagvg~GyrG-----vsrgGfrnnggGdyrnpgggy--rgsGGfgrgggrgaggg 1267 (1282)
T KOG0921|consen 1214 SAR--ANYGAGVGNGYRG-----VSRGGFRNNGGGDYRNPGGGY--RGSGGFGRGGGRGAGGG 1267 (1282)
T ss_pred CCC--CCccccccCCCcc-----ccCCccccCCCCCCCCCCCCc--cCCCCcCCCCCCCCCCC
Confidence 222 2222334444444 234567677888887544322 22355666665444443
No 5
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=27.42 E-value=3e+02 Score=35.26 Aligned_cols=42 Identities=17% Similarity=0.412 Sum_probs=24.4
Q ss_pred cccCCCCCcceeecCCCcCCCCCCCC-CCCCcc-cccCCCCHHHHH
Q 001594 336 EFTLPSHKTIFEVDIDGFEEKPWKYP-GVDITD-FFNFGLNEESWK 379 (1048)
Q Consensus 336 eF~lp~~k~IfdvDiD~~eeKPWRkP-GADISD-YFNYGFnE~TWk 379 (1048)
-|.|++. -+|.+++ .+.--+|.+= -.|||+ -|=-+-+|+.+.
T Consensus 611 P~gLkpK-K~~k~e~-~Mrr~nW~kI~p~d~s~~cFWvkv~Edk~e 654 (1102)
T KOG1924|consen 611 PFGLKPK-KVYKPEV-PMRRFNWSKIVPRDLSENCFWVKVNEDKLE 654 (1102)
T ss_pred CCCCCcc-ccCCCCC-ccccCCccccCccccCccceeeecchhhcc
Confidence 3444433 4566654 3567788763 345654 576777777653
No 6
>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=26.71 E-value=44 Score=40.03 Aligned_cols=37 Identities=27% Similarity=0.257 Sum_probs=25.6
Q ss_pred eeecCCCCCCCCCCCCCCCCcCCCCCceEEeeccCccC
Q 001594 413 IQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSVDD 450 (1048)
Q Consensus 413 IQVEgg~geR~PS~D~R~PR~rDSD~IIeIv~qdS~Dd 450 (1048)
|++.++..+++ +-.+|.++.......|+|-+++..-+
T Consensus 200 ie~~~~~~~~~-~e~~r~~~~~~~~l~~q~~g~~p~~~ 236 (538)
T KOG1049|consen 200 IEFAGGGLERT-TEPLRRQRDLFGELKIQIPGPGPVGN 236 (538)
T ss_pred hhhcccccccc-cccccccccCcchhhhccCCCCCccc
Confidence 45666667777 66778888777777777777654443
No 7
>PF11709 Mit_ribos_Mrp51: Mitochondrial ribosomal protein subunit ; InterPro: IPR016712 The function of mitochondrial ribosomal small-subunit protein MRP51 is not entirely clear, but deletion of the MRP51 gene completely blocks mitochondrial gene expression [].
Probab=25.19 E-value=2.8e+02 Score=31.02 Aligned_cols=85 Identities=26% Similarity=0.465 Sum_probs=51.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCcCcccCCcc------ccccC------CCCCcceeecCCC
Q 001594 293 PAAGRGRGDWRPAGMKTAPPM--------QKGFHPGFGMSASGVNMAGRG------LEFTL------PSHKTIFEVDIDG 352 (1048)
Q Consensus 293 ~~aGrgrGdWrp~g~k~~~~~--------~k~fh~G~g~~~~G~~~aGrG------~eF~l------p~~k~IfdvDiD~ 352 (1048)
+.+.+.|||| |.|...|- .+.+.+-..|+.|-.. ++-. -|+-+ ..+.++|+-+.+.
T Consensus 48 p~ss~~RgdW---GLKr~LP~k~~~~~I~vn~lDt~e~~tdfesa-~~~~~~~~rfqElgl~~~~~~~~~~plF~~~~~~ 123 (312)
T PF11709_consen 48 PPSSLARGDW---GLKRPLPSKSTSPYIRVNDLDTIERMTDFESA-SDHVWTRKRFQELGLPPSVPPGRQNPLFESESDN 123 (312)
T ss_pred Chhhhhcccc---ccCCcCCccCCCceEEEeccccccccCcceeC-CchHHHHHHHHhcCCCccCCccccCCcccccccc
Confidence 4445789999 88874442 2234444556666641 2111 01111 2344666655553
Q ss_pred c----------CCCCCCCCCCCCcccccCCCCHHHHHHHHHHHHHhhhhh
Q 001594 353 F----------EEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLET 392 (1048)
Q Consensus 353 ~----------eeKPWRkPGADISDYFNYGFnE~TWk~Yc~kq~qlR~E~ 392 (1048)
. ...|| ..|.++..+..|+++++.+|.||
T Consensus 124 ~~~~~~~~~~~~~~p~-----------~~~mt~~ef~~yL~kvr~~R~eF 162 (312)
T PF11709_consen 124 TDSSPPLSSLLNSGPW-----------LAGMTEGEFERYLKKVRPLRPEF 162 (312)
T ss_pred ccccccccchhhcCCc-----------ccCCCHHHHHHHHHHhHHHHHHH
Confidence 2 12344 46999999999999999999998
No 8
>PF07067 DUF1340: Protein of unknown function (DUF1340); InterPro: IPR009774 This family consists of several hypothetical Streptococcus thermophilus bacteriophage proteins of around 235 residues in length. The function of this family is unknown.
Probab=21.86 E-value=41 Score=36.23 Aligned_cols=28 Identities=39% Similarity=0.475 Sum_probs=25.2
Q ss_pred CcccccCCCCHHHHHHHHHHHHHhhhhh
Q 001594 365 ITDFFNFGLNEESWKDYCKQLEQHRLET 392 (1048)
Q Consensus 365 ISDYFNYGFnE~TWk~Yc~kq~qlR~E~ 392 (1048)
-+|=-|-|++|+-++.||+.++.||+..
T Consensus 103 d~dk~NAGL~eeLfkq~~~Ei~~Lra~h 130 (236)
T PF07067_consen 103 DTDKTNAGLPEELFKQYREEIEELRAAH 130 (236)
T ss_pred CcccccCCCCHHHHHHHHHHHHHHHHhC
Confidence 4567799999999999999999999985
No 9
>PHA02669 hypothetical protein; Provisional
Probab=14.97 E-value=1.7e+02 Score=31.23 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=28.7
Q ss_pred cccccCCCccCceEEeccCCCCCccccCCCCCCCCCCCCCceEEEecCCCCCccCcchh
Q 001594 142 EDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVE 200 (1048)
Q Consensus 142 ~ddWdSDSeDdlqiVlNd~~~~p~~~~r~~gdddddeDgd~lvivadg~~~~~~~~~~E 200 (1048)
-.-||||+||.=.+----++ ++--|--|..+..++.|++++|
T Consensus 73 ~SRWDSDtEdGdtvSTTSTS-----------------~gGTLtRv~~~~~p~~~~pmYE 114 (210)
T PHA02669 73 CSRWDSDTEDGDTVSTTSTS-----------------GGGTLSRVWVGGGPRFQHPMYE 114 (210)
T ss_pred cccccCcccCCceeeeeecC-----------------CCceEEeeeecCCCccCcchhh
Confidence 35699999976554433332 3446777788888888888876
No 10
>PF04618 HD-ZIP_N: HD-ZIP protein N terminus; InterPro: IPR006712 Homeodomain leucine zipper (HDZip) genes encode putative transcription factors that are unique to plants. This observation suggests that homeobox-leucine zipper genes evolved after the divergence of plants and animals, perhaps to mediate specific regulatory events []. This domain is the N-terminal of plant homeobox-leucine zipper proteins. Its function is unknown.; GO: 0006351 transcription, DNA-dependent, 0005634 nucleus
Probab=10.86 E-value=8.7e+02 Score=24.20 Aligned_cols=8 Identities=50% Similarity=0.891 Sum_probs=5.1
Q ss_pred CCcccccc
Q 001594 1 MEDDDEFG 8 (1048)
Q Consensus 1 MEdDDEFG 8 (1048)
|+.+|.+|
T Consensus 2 ~~~~d~LG 9 (111)
T PF04618_consen 2 MEKKDGLG 9 (111)
T ss_pred CCCCCcce
Confidence 56666666
Done!