Query 001594
Match_columns 1048
No_of_seqs 113 out of 162
Neff 2.3
Searched_HMMs 29240
Date Tue Mar 26 16:51:51 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001594.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_891-895//hhsearch_pdb/001594hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p06_A VP4 protein; CIS-cleava 1.0 1 1 13.1 0.4 29 340-368 156-188 (194)
2 3bts_E Regulatory protein GAL4 1.0 1 1 13.1 -0.9 13 365-377 8-20 (26)
3 3ui3_A Immunoglobulin G-bindin 1.0 1 1 12.6 -6.1 35 340-374 58-96 (160)
4 1f2v_A COBH, precorrin-8X meth 1.0 1 1 12.3 -0.0 17 250-266 3-19 (219)
5 1qez_A Ppase, S-ppase, protein 1.0 1 1 12.1 -1.8 10 369-378 50-59 (173)
6 2prd_A Pyrophosphate phosphohy 1.0 1 1 12.1 -2.1 11 369-379 53-63 (174)
7 3q46_A TT-ippase; inorganic py 1.0 1 1 12.0 -1.8 11 369-379 54-64 (178)
8 2au7_A Inorganic pyrophosphata 1.0 1 1 12.0 -1.8 10 369-378 53-62 (175)
9 3fq3_A Inorganic pyrophosphata 1.0 1 1 12.0 -1.8 10 369-378 75-84 (197)
10 3d53_A Inorganic pyrophosphata 1.0 1 1 12.0 -1.8 10 369-378 54-63 (173)
No 1
>3p06_A VP4 protein; CIS-cleavage, intramolecular acyl-enzyme, ester-linkage, ALP protein, protease, polyprotein processing, acyl-enzyme, HYD; 2.10A {Tellina virus 1}
Probab=1.00 E-value=1 Score=13.08 Aligned_cols=29 Identities=24% Similarity=0.521 Sum_probs=17.7
Q ss_pred CCCCCCEEECCCCC----CCCCCCCCCCCCCCC
Q ss_conf 99996101137776----789899999998521
Q 001594 340 PSHKTIFEVDIDGF----EEKPWKYPGVDITDF 368 (1048)
Q Consensus 340 P~~k~IfdvDID~l----eeKPWRkPGADISDY 368 (1048)
-+.+.+--+.++++ -+||||+|-+-+|.-
T Consensus 156 nsdralkvvtleqlrqvvgdkpwrkpmvtfssg 188 (194)
T 3p06_A 156 NSDRALKVVTLEQLRQVVGDKPWRKPMVTFSSG 188 (194)
T ss_dssp SSTTSEECCBHHHHHHHHSSCCCSSSCEECCCC
T ss_pred CCCCCEEEEEHHHHHHHHCCCCCCCCEEEEECC
T ss_conf 676514567899999886688655742784077
No 2
>3bts_E Regulatory protein GAL4; eukaryotic transcription complex, NAD, rossmann fold, acetylation, carbohydrate metabolism, DNA-binding; HET: NAD; 2.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=13.06 Aligned_cols=13 Identities=23% Similarity=0.715 Sum_probs=7.5
Q ss_pred CCCCCCCCCCHHH
Q ss_conf 8521257889788
Q 001594 365 ITDFFNFGLNEES 377 (1048)
Q Consensus 365 ISDYFNYGFnE~T 377 (1048)
+-|-|||=||++.
T Consensus 8 MDDvyNylFdd~d 20 (26)
T 3bts_E 8 MDDVYNYLFDDED 20 (26)
T ss_pred HHHHHHHHCCCCC
T ss_conf 9999998608410
No 3
>3ui3_A Immunoglobulin G-binding protein G, virulence-ASS protein D; ferrodoxin-like fold, virulence associated protein D, ribonu RNA binding protein; 2.80A {Streptococcus}
Probab=1.00 E-value=1 Score=12.58 Aligned_cols=35 Identities=14% Similarity=0.313 Sum_probs=21.6
Q ss_pred CCCCCCEEECCCCCCC---CCCCCCCCCCCCCC-CCCCC
Q ss_conf 9999610113777678---98999999985212-57889
Q 001594 340 PSHKTIFEVDIDGFEE---KPWKYPGVDITDFF-NFGLN 374 (1048)
Q Consensus 340 P~~k~IfdvDID~lee---KPWRkPGADISDYF-NYGFn 374 (1048)
|...-.||+++..|++ +||++.=.||-.|+ .|||.
T Consensus 58 ~MYAIaFDLdt~~LKk~Y~~~y~nAY~DIrk~Le~~GF~ 96 (160)
T 3ui3_A 58 SMYALAFDLKIEILKKEYGEPYNKAYDDLRQELELLGFE 96 (160)
T ss_dssp CEEEEEEEECHHHHHHHTCSSCHHHHHHHHHHHHHTTEE
T ss_pred CEEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 458999742579998776874267999999999984987
No 4
>1f2v_A COBH, precorrin-8X methylmutase; alpha-beta WIND, doubly wound sheet, isomerase; 2.10A {Pseudomonas denitrificans} SCOP: c.23.17.1 PDB: 1i1h_A*
Probab=1.00 E-value=1 Score=12.31 Aligned_cols=17 Identities=29% Similarity=0.643 Sum_probs=8.7
Q ss_pred CCCCCCCCCCCEEECCC
Q ss_conf 66579988733120799
Q 001594 250 FAYHNPYHSQFKYVRPG 266 (1048)
Q Consensus 250 g~~~hp~hs~fKYVRPg 266 (1048)
|.|||-||-.|||+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (219)
T 1f2v_A 3 GSHHHHHHPEYDYIRDG 19 (219)
T ss_dssp --------CCCCCCCCH
T ss_pred CCCCCCCCCCCCCCCCC
T ss_conf 76556668756687880
No 5
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=1.00 E-value=1 Score=12.11 Aligned_cols=10 Identities=30% Similarity=0.707 Sum_probs=7.2
Q ss_pred CCCCCCHHHH
Q ss_conf 2578897889
Q 001594 369 FNFGLNEESW 378 (1048)
Q Consensus 369 FNYGFnE~TW 378 (1048)
|||||=..||
T Consensus 50 ~NYGfIP~Tl 59 (173)
T 1qez_A 50 FNYGFIPGTL 59 (173)
T ss_dssp SEEEECTTCC
T ss_pred CCCCCCCCCC
T ss_conf 3346525662
No 6
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1
Probab=1.00 E-value=1 Score=12.07 Aligned_cols=11 Identities=9% Similarity=0.244 Sum_probs=6.3
Q ss_pred CCCCCCHHHHH
Q ss_conf 25788978899
Q 001594 369 FNFGLNEESWK 379 (1048)
Q Consensus 369 FNYGFnE~TWk 379 (1048)
|||||=..||.
T Consensus 53 ~NYGfIP~Tl~ 63 (174)
T 2prd_A 53 GDYGFIPSTLA 63 (174)
T ss_dssp SEEEECSSCCC
T ss_pred CCCCCCCCCCC
T ss_conf 23465357656
No 7
>3q46_A TT-ippase; inorganic pyrophosphatase, hydrolase; HET: EPE; 0.99A {Thermococcus thioreducens} SCOP: b.40.5.1 PDB: 3r6e_A* 3q3l_A 3i98_A 3q4w_A 3q9m_A* 3r5u_A 3r5v_A* 3q5v_A* 1ude_A 1twl_A
Probab=1.00 E-value=1 Score=12.03 Aligned_cols=11 Identities=18% Similarity=0.872 Sum_probs=7.0
Q ss_pred CCCCCCHHHHH
Q ss_conf 25788978899
Q 001594 369 FNFGLNEESWK 379 (1048)
Q Consensus 369 FNYGFnE~TWk 379 (1048)
|||||=..||.
T Consensus 54 ~NYGfIP~Tl~ 64 (178)
T 3q46_A 54 VDYGIIPQTWY 64 (178)
T ss_dssp SEEEECTTCCB
T ss_pred CCCCCCCCCCC
T ss_conf 22125878517
No 8
>2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A 2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A 1mjz_A 1mjx_A 1mjw_A 3i4q_A*
Probab=1.00 E-value=1 Score=12.02 Aligned_cols=10 Identities=20% Similarity=0.468 Sum_probs=7.3
Q ss_pred CCCCCCHHHH
Q ss_conf 2578897889
Q 001594 369 FNFGLNEESW 378 (1048)
Q Consensus 369 FNYGFnE~TW 378 (1048)
|||||=..||
T Consensus 53 ~NYGfIP~Tl 62 (175)
T 2au7_A 53 CNYGYINHTL 62 (175)
T ss_dssp SEEEECTTCC
T ss_pred CCCCCCCCCC
T ss_conf 1748267853
No 9
>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal INOR pyrophosphatase; ssgcid, inorganic phosphatase; 1.90A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3sw5_A
Probab=1.00 E-value=1 Score=12.00 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=9.4
Q ss_pred CCCCCCHHHH
Q ss_conf 2578897889
Q 001594 369 FNFGLNEESW 378 (1048)
Q Consensus 369 FNYGFnE~TW 378 (1048)
|||||=..||
T Consensus 75 ~NYGfIP~Tl 84 (197)
T 3fq3_A 75 GNYGFVPHTL 84 (197)
T ss_dssp SEEEECTTCC
T ss_pred CCCCCCCCCC
T ss_conf 3542156744
No 10
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=1.00 E-value=1 Score=11.99 Aligned_cols=10 Identities=20% Similarity=0.564 Sum_probs=7.4
Q ss_pred CCCCCCHHHH
Q ss_conf 2578897889
Q 001594 369 FNFGLNEESW 378 (1048)
Q Consensus 369 FNYGFnE~TW 378 (1048)
|||||=..||
T Consensus 54 ~NYGfIP~Tl 63 (173)
T 3d53_A 54 CNYGFIPDTL 63 (173)
T ss_dssp SEEEECTTCC
T ss_pred CCCCHHHCCC
T ss_conf 4215243772
Done!