Query 001594
Match_columns 1048
No_of_seqs 113 out of 162
Neff 2.3
Searched_HMMs 13730
Date Tue Mar 26 16:57:02 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001594.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_891-895//hhsearch_scop/001594hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rcqa2 c.1.6.1 (A:8-233) Alan 5.2 68 0.0049 8.2 2.2 20 256-275 193-212 (226)
2 d2jxta1 d.355.1.1 (A:1-78) Rib 4.3 86 0.0062 7.6 0.3 19 736-754 39-57 (78)
3 d1qeza_ b.40.5.1 (A:) Inorgani 3.8 45 0.0033 9.3 -1.8 12 368-379 48-59 (170)
4 d1twla_ b.40.5.1 (A:) Inorgani 3.7 45 0.0033 9.3 -1.8 11 369-379 53-63 (173)
5 d1cxya_ d.120.1.1 (A:) Cytochr 3.4 1.1E+02 0.0083 6.8 0.4 23 360-382 47-71 (81)
6 d1wfza_ d.224.1.2 (A:) Iron-su 3.3 1.2E+02 0.0084 6.8 1.7 13 535-547 3-15 (130)
7 d1bd0a2 c.1.6.1 (A:12-244) Ala 2.5 1.7E+02 0.012 5.8 1.1 17 257-273 201-217 (233)
8 d1nkta4 c.37.1.19 (A:397-615) 2.4 1.3E+02 0.0094 6.5 -0.7 21 273-298 73-95 (219)
9 d1vlra2 d.246.1.1 (A:39-145) m 2.4 1.7E+02 0.013 5.7 0.6 35 153-187 10-45 (107)
10 d1d3ga_ c.1.4.1 (A:) Dihydroor 2.4 1.3E+02 0.0098 6.4 -0.6 16 1-18 1-16 (367)
No 1
>d1rcqa2 c.1.6.1 (A:8-233) Alanine racemase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.15 E-value=68 Score=8.19 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=12.9
Q ss_pred CCCCCEEECCCCCCCCCCCC
Q ss_conf 88733120799998899965
Q 001594 256 YHSQFKYVRPGAAPIPGSAT 275 (1048)
Q Consensus 256 ~hs~fKYVRPga~~~pga~~ 275 (1048)
...+|-+||||.+.+=..|.
T Consensus 193 ~~~~~d~vR~Gi~lYG~~P~ 212 (226)
T d1rcqa2 193 PKVPSDWVRPGILLYGATPF 212 (226)
T ss_dssp TTSCCSEECCCGGGGTCCSS
T ss_pred CCCCCCEECCCCEEECCCCC
T ss_conf 97789887608211583968
No 2
>d2jxta1 d.355.1.1 (A:1-78) Ribosomal protein LX, RplX {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=4.27 E-value=86 Score=7.56 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=14.2
Q ss_pred HCCCHHHCCCCCCCCCCCC
Q ss_conf 0000000023545620013
Q 001594 736 HLDEIGARHRGKARESERI 754 (1048)
Q Consensus 736 ~~~e~gsR~R~K~Re~er~ 754 (1048)
--.+||||||-|.+-+...
T Consensus 39 ~Ys~~gSrHr~kr~~I~I~ 57 (78)
T d2jxta1 39 LYSEFGSKHRVPRSKVKIE 57 (78)
T ss_dssp HHHHHHHHTCCCGGGEEEE
T ss_pred HHHHHHHHCCCCCCCEEEE
T ss_conf 9999766518873426999
No 3
>d1qeza_ b.40.5.1 (A:) Inorganic pyrophosphatase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=3.75 E-value=45 Score=9.27 Aligned_cols=12 Identities=25% Similarity=0.517 Sum_probs=7.7
Q ss_pred CCCCCCCHHHHH
Q ss_conf 125788978899
Q 001594 368 FFNFGLNEESWK 379 (1048)
Q Consensus 368 YFNYGFnE~TWk 379 (1048)
.|||||=-.||-
T Consensus 48 P~nYGfiP~T~~ 59 (170)
T d1qeza_ 48 PFNYGFIPGTLE 59 (170)
T ss_dssp SSEEEECTTCCC
T ss_pred CCCEEEEECCCC
T ss_conf 754111311124
No 4
>d1twla_ b.40.5.1 (A:) Inorganic pyrophosphatase {Pyrococcus furiosus [TaxId: 2261]}
Probab=3.75 E-value=45 Score=9.27 Aligned_cols=11 Identities=18% Similarity=0.833 Sum_probs=8.3
Q ss_pred CCCCCCHHHHH
Q ss_conf 25788978899
Q 001594 369 FNFGLNEESWK 379 (1048)
Q Consensus 369 FNYGFnE~TWk 379 (1048)
|||||=-.||.
T Consensus 53 ~nYGfiP~T~~ 63 (173)
T d1twla_ 53 VDYGIIPRTWY 63 (173)
T ss_dssp SEEEECTTCCB
T ss_pred CCCCEEECCCC
T ss_conf 66561202134
No 5
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira vacuolata [TaxId: 1054]}
Probab=3.37 E-value=1.1e+02 Score=6.79 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=14.3
Q ss_pred CCCCCCCCCCC-CCCCH-HHHHHHH
Q ss_conf 99999852125-78897-8899999
Q 001594 360 YPGVDITDFFN-FGLNE-ESWKDYC 382 (1048)
Q Consensus 360 kPGADISDYFN-YGFnE-~TWk~Yc 382 (1048)
.-|.|+|++|+ |++.+ .++.++-
T Consensus 47 ~aGkD~t~~F~~~~~~~~Hs~~a~~ 71 (81)
T d1cxya_ 47 WCGQESTEAWETKSYGEPHSSLAAR 71 (81)
T ss_dssp GTTSBCHHHHHHTTTTCCCCHHHHH
T ss_pred HCCCCCHHHHHHCCCCCCCCHHHHH
T ss_conf 8398620888851876659899999
No 6
>d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse (Mus musculus), mitochondrial [TaxId: 10090]}
Probab=3.34 E-value=1.2e+02 Score=6.76 Aligned_cols=13 Identities=38% Similarity=0.756 Sum_probs=7.1
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 9999999999999
Q 001594 535 PGSRGPTPKYPGE 547 (1048)
Q Consensus 535 ~gsrg~~~~~~g~ 547 (1048)
.+|+|++|++.|.
T Consensus 3 ~~~~gkNPrn~G~ 15 (130)
T d1wfza_ 3 SGSSGENPRNVGS 15 (130)
T ss_dssp SCCCCSCCSSCCC
T ss_pred CCCCCCCCCCCCC
T ss_conf 8999989998857
No 7
>d1bd0a2 c.1.6.1 (A:12-244) Alanine racemase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=2.49 E-value=1.7e+02 Score=5.81 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=11.1
Q ss_pred CCCCEEECCCCCCCCCC
Q ss_conf 87331207999988999
Q 001594 257 HSQFKYVRPGAAPIPGS 273 (1048)
Q Consensus 257 hs~fKYVRPga~~~pga 273 (1048)
..+|-+||||.+.+-..
T Consensus 201 ~~~~d~vR~Gi~lYG~~ 217 (233)
T d1bd0a2 201 DRTFNMVRFGIAMYGLA 217 (233)
T ss_dssp TSCTTEEEECGGGGTCC
T ss_pred CCCCCEECCCCEEECCC
T ss_conf 55697877294207879
No 8
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.40 E-value=1.3e+02 Score=6.47 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC--CCCCCCCCCCCCCC
Q ss_conf 965679999986--67776689988878
Q 001594 273 SATAVAAGGPGQ--VRPLVNMGPAAGRG 298 (1048)
Q Consensus 273 a~~~~~~g~pgq--~rp~~~~~~~aGrg 298 (1048)
|..+..+|-+|. +++ .|||||
T Consensus 73 AeIIAqAG~~GaVTIAT-----NMAGRG 95 (219)
T d1nkta4 73 ATIIAVAGRRGGVTVAT-----NMAGRG 95 (219)
T ss_dssp HHHHHTTTSTTCEEEEE-----TTCSTT
T ss_pred HHHHHHCCCCCCEEEEC-----CCCCCC
T ss_conf 89999646688379620-----004787
No 9
>d1vlra2 d.246.1.1 (A:39-145) mRNA decapping enzyme DcpS N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.39 E-value=1.7e+02 Score=5.68 Aligned_cols=35 Identities=26% Similarity=0.510 Sum_probs=0.0
Q ss_pred CEEEECCCC-CCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 158841589-99731259999999989999659996
Q 001594 153 LQIVLNEDN-HRPMLIDGGGGDDDDDEDGDPLVIVA 187 (1048)
Q Consensus 153 lqiVlNd~~-~~p~~~~r~~gdd~ddeDgd~lviva 187 (1048)
++=|||++. ..-..+.+.+++...+.|+++-||++
T Consensus 10 ~~rvL~~d~~~K~i~llG~i~~~~~~~d~~~AIvil 45 (107)
T d1vlra2 10 VQKVLRESARDKIIFLHGKVNEDSGDTHGEDAVVIL 45 (107)
T ss_dssp EEEEEEEETTTTEEEEEEEECC------CEEEEEEE
T ss_pred EEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEE
T ss_conf 998305698888699997755767777887679999
No 10
>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.37 E-value=1.3e+02 Score=6.36 Aligned_cols=16 Identities=38% Similarity=0.609 Sum_probs=0.0
Q ss_pred CCCCCCCCCHHHHHCCCC
Q ss_conf 986421242011101458
Q 001594 1 MEDDDEFGDLYTDVLRPL 18 (1048)
Q Consensus 1 MEdDDEFGDLYtDvlrPf 18 (1048)
|+-++|+ +|-++|+||
T Consensus 1 ~~~~~~~--~~~~~~~~~ 16 (367)
T d1d3ga_ 1 MATGDER--FYAEHLMPT 16 (367)
T ss_dssp CCSCCHH--HHHHTHHHH
T ss_pred CCCCCHH--HHHHHHHHH
T ss_conf 9777089--999999999
Done!