BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001595
(1048 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OQ6|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys9
pdb|2OQ6|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys9
pdb|2OQ7|A Chain A, The Crystal Structure Of Jmjd2a Complexed With Ni And
N-Oxalylglycine
pdb|2OQ7|B Chain B, The Crystal Structure Of Jmjd2a Complexed With Ni And
N-Oxalylglycine
pdb|2OS2|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys36
pdb|2OS2|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys36
pdb|2OT7|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Monomethylated At Lys9
pdb|2OT7|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Monomethylated At Lys9
pdb|2OX0|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Dimethylated At Lys9
pdb|2OX0|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Dimethylated At Lys9
pdb|2VD7|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
Pyridine-2,4-Dicarboxylic Acid
pdb|2VD7|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
Pyridine-2,4-Dicarboxylic Acid
pdb|3NJY|A Chain A, Crystal Structure Of Jmjd2a Complexed With 5-Carboxy-8-
Hydroxyquinoline
pdb|3NJY|B Chain B, Crystal Structure Of Jmjd2a Complexed With 5-Carboxy-8-
Hydroxyquinoline
pdb|2YBP|A Chain A, Jmjd2a Complexed With R-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBP|B Chain B, Jmjd2a Complexed With R-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBS|A Chain A, Jmjd2a Complexed With S-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBS|B Chain B, Jmjd2a Complexed With S-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|3PDQ|A Chain A, Crystal Structure Of Jmjd2a Complexed With Bipyridyl
Inhibitor
pdb|3PDQ|B Chain B, Crystal Structure Of Jmjd2a Complexed With Bipyridyl
Inhibitor
pdb|2YBK|A Chain A, Jmjd2a Complexed With R-2-Hydroxyglutarate
pdb|2YBK|B Chain B, Jmjd2a Complexed With R-2-Hydroxyglutarate
pdb|3U4S|A Chain A, Histone Lysine Demethylase Jmjd2a In Complex With T11c
Peptide Substrate Crosslinked To N-Oxalyl-D-Cysteine
pdb|3U4S|B Chain B, Histone Lysine Demethylase Jmjd2a In Complex With T11c
Peptide Substrate Crosslinked To N-Oxalyl-D-Cysteine
pdb|3RVH|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|3RVH|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4GD4|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4GD4|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4AI9|A Chain A, Jmjd2a Complexed With Daminozide
pdb|4AI9|B Chain B, Jmjd2a Complexed With Daminozide
Length = 381
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 93/157 (59%)
Query: 245 WNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKI 304
WN+ L + V G I GV P+LY GM +SF WH ED LYS+NYLH+G+PK
Sbjct: 170 WNIGRLRTILDLVEKESGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKS 229
Query: 305 WYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEF 364
WY VP H LE+ + P + L +T +SP +LK G+P V Q +GEF
Sbjct: 230 WYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEF 289
Query: 365 VLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAV 401
++TFP YH+GFN GFNCAE+ N A W+ +G+QAV
Sbjct: 290 MITFPYGYHAGFNHGFNCAESTNFATRRWIEYGKQAV 326
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 34 VFYPTVEEFEDTLGYIAKIRSK-AESFGICRIVPPSSWTP 72
FYPT+EEF + YIA I S+ A G+ ++VPP W P
Sbjct: 38 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKP 77
>pdb|2GP3|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a
pdb|2GP3|B Chain B, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a
pdb|2GP5|A Chain A, Crystal Structure Of Catalytic Core Domain Of Jmjd2a
Complexed With Alpha-Ketoglutarate
pdb|2GP5|B Chain B, Crystal Structure Of Catalytic Core Domain Of Jmjd2a
Complexed With Alpha-Ketoglutarate
Length = 349
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 93/157 (59%)
Query: 245 WNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKI 304
WN+ L + V G I GV P+LY GM +SF WH ED LYS+NYLH+G+PK
Sbjct: 147 WNIGRLRTILDLVEKESGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKS 206
Query: 305 WYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEF 364
WY VP H LE+ + P + L +T +SP +LK G+P V Q +GEF
Sbjct: 207 WYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEF 266
Query: 365 VLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAV 401
++TFP YH+GFN GFNCAE+ N A W+ +G+QAV
Sbjct: 267 MITFPYGYHAGFNHGFNCAESTNFATRRWIEYGKQAV 303
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 34 VFYPTVEEFEDTLGYIAKIRSK-AESFGICRIVPPSSWTP 72
FYPT+EEF + YIA I S+ A G+ ++VPP W P
Sbjct: 15 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKP 54
>pdb|2P5B|A Chain A, The Complex Structure Of Jmjd2a And Trimethylated H3k36
Peptide
pdb|2P5B|B Chain B, The Complex Structure Of Jmjd2a And Trimethylated H3k36
Peptide
pdb|2Q8C|A Chain A, Crystal Structure Of Jmjd2a In Ternary Complex With An
Histone H3k9me3 Peptide And 2-Oxoglutarate
pdb|2Q8C|B Chain B, Crystal Structure Of Jmjd2a In Ternary Complex With An
Histone H3k9me3 Peptide And 2-Oxoglutarate
pdb|2Q8D|A Chain A, Crystal Structure Of Jmj2d2a In Ternary Complex With
Histone H3-K36me2 And Succinate
pdb|2Q8D|B Chain B, Crystal Structure Of Jmj2d2a In Ternary Complex With
Histone H3-K36me2 And Succinate
pdb|2Q8E|A Chain A, Specificity And Mechanism Of Jmjd2a, A Trimethyllysine-
Specific Histone Demethylase
pdb|2Q8E|B Chain B, Specificity And Mechanism Of Jmjd2a, A Trimethyllysine-
Specific Histone Demethylase
Length = 352
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 93/157 (59%)
Query: 245 WNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKI 304
WN+ L + V G I GV P+LY GM +SF WH ED LYS+NYLH+G+PK
Sbjct: 150 WNIGRLRTILDLVEKESGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKS 209
Query: 305 WYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEF 364
WY VP H LE+ + P + L +T +SP +LK G+P V Q +GEF
Sbjct: 210 WYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEF 269
Query: 365 VLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAV 401
++TFP YH+GFN GFNCAE+ N A W+ +G+QAV
Sbjct: 270 MITFPYGYHAGFNHGFNCAESTNFATRRWIEYGKQAV 306
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 34 VFYPTVEEFEDTLGYIAKIRSK-AESFGICRIVPPSSWTP 72
FYPT+EEF + YIA I S+ A G+ ++VPP W P
Sbjct: 18 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKP 57
>pdb|2XML|A Chain A, Crystal Structure Of Human Jmjd2c Catalytic Domain
pdb|2XML|B Chain B, Crystal Structure Of Human Jmjd2c Catalytic Domain
Length = 348
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 110/209 (52%), Gaps = 21/209 (10%)
Query: 192 DIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNLP 251
D+E +YW+ + V YGAD+ + G + WN+ L
Sbjct: 119 DLERKYWKNLTF----VAPIYGADINGSIYDEG-----------------VDEWNIARLN 157
Query: 252 RLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGS 311
+ V G I GV P+LY GM ++F WH ED LYS+NYLH+G+PK WY +P
Sbjct: 158 TVLDVVEEECGISIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPE 217
Query: 312 HASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRA 371
H LE+ + P + L +T +SPSVLK G+P + Q +GEF++TFP
Sbjct: 218 HGKRLERLAQGFFPSSSQGCDAFLRHKMTLISPSVLKKYGIPFDKITQEAGEFMITFPYG 277
Query: 372 YHSGFNCGFNCAEAVNVAPVDWLAHGQQA 400
YH+GFN GFNCAE+ N A V W+ +G+ A
Sbjct: 278 YHAGFNHGFNCAESTNFATVRWIDYGKVA 306
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 34 VFYPTVEEFEDTLGYIAKIRSK-AESFGICRIVPPSSWTP 72
F P++EEF + Y+A + SK A G+ +++PP W P
Sbjct: 19 TFRPSMEEFREFNKYLAYMESKGAHRAGLAKVIPPKEWKP 58
>pdb|2WWJ|A Chain A, Structure Of Jmjd2a Complexed With Inhibitor 10a
pdb|2WWJ|B Chain B, Structure Of Jmjd2a Complexed With Inhibitor 10a
Length = 348
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 93/157 (59%)
Query: 245 WNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKI 304
WN+ L + V G I GV P+LY GM +SF WH ED LYS+NYLH+G+PK
Sbjct: 142 WNIGRLRTILDLVEKESGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKS 201
Query: 305 WYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEF 364
WY VP H LE+ + P + L +T +SP +LK G+P V Q +GEF
Sbjct: 202 WYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEF 261
Query: 365 VLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAV 401
++TFP YH+GFN GFNCAE+ N A W+ +G+QAV
Sbjct: 262 MITFPYGYHAGFNHGFNCAESTNFATRRWIEYGKQAV 298
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 34 VFYPTVEEFEDTLGYIAKIRSK-AESFGICRIVPPSSWTP 72
FYPT+EEF + YIA I S+ A G+ ++VPP W P
Sbjct: 10 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKP 49
>pdb|2PXJ|A Chain A, The Complex Structure Of Jmjd2a And Monomethylated H3k36
Peptide
pdb|2PXJ|B Chain B, The Complex Structure Of Jmjd2a And Monomethylated H3k36
Peptide
Length = 347
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 93/157 (59%)
Query: 245 WNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKI 304
WN+ L + V G I GV P+LY GM +SF WH ED LYS+NYLH+G+PK
Sbjct: 147 WNIGRLRTILDLVEKESGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKS 206
Query: 305 WYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEF 364
WY VP H LE+ + P + L +T +SP +LK G+P V Q +GEF
Sbjct: 207 WYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEF 266
Query: 365 VLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAV 401
++TFP YH+GFN GFNCAE+ N A W+ +G+QAV
Sbjct: 267 MITFPYGYHAGFNHGFNCAESTNFATRRWIEYGKQAV 303
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 34 VFYPTVEEFEDTLGYIAKIRSK-AESFGICRIVPPSSWTP 72
FYPT+EEF + YIA I S+ A G+ ++VPP W P
Sbjct: 15 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKP 54
>pdb|2W2I|A Chain A, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
pdb|2W2I|B Chain B, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
pdb|2W2I|C Chain C, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
Length = 358
Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 108/193 (55%), Gaps = 10/193 (5%)
Query: 214 ADLETGAFAS--GFPKASSLGTESDLDQYAMSGWNLNNLPRLPGSVLAFE----GSDISG 267
ADLE + S G P L + + WNL +L G++L G I G
Sbjct: 138 ADLEQRYWKSHPGNPPIYGADISGSLFEESTKQWNLGHL----GTILDLLEQECGVVIEG 193
Query: 268 VLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDL 327
V P+LY GM ++F WH ED LYS+NYLH+G+PK WY VP H LE+ R+ PD+
Sbjct: 194 VNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDI 253
Query: 328 FEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVN 387
L V +SP+VLK G+P + Q +GEF++TFP YH+GFN GFNCAEA+N
Sbjct: 254 SRGCEAFLRHKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAIN 313
Query: 388 VAPVDWLAHGQQA 400
A W+ +G+ A
Sbjct: 314 FATPRWIDYGKMA 326
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 10/65 (15%)
Query: 34 VFYPTVEEFEDTLGYIAKIRSK-AESFGICRIVPPSSWTPPCPLKAKNIW---ENAKFST 89
FYPT+EEF D Y+A + S+ A G+ +++PP W KA+ ++ E+ +T
Sbjct: 39 TFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEW------KARQMYDDIEDILIAT 92
Query: 90 RIQQI 94
+QQ+
Sbjct: 93 PLQQV 97
>pdb|3DXT|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2d
Length = 354
Score = 150 bits (378), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 110/211 (52%), Gaps = 25/211 (11%)
Query: 192 DIEGEYW--RIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNN 249
D+E +YW RI P YGAD+ F + + Q WNL +
Sbjct: 120 DLERKYWKNRIYNSPI------YGADISGSLF------------DENTKQ-----WNLGH 156
Query: 250 LPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVP 309
L + + G I GV P+LY GM ++F WH ED LYS+NYLH G+PK WY VP
Sbjct: 157 LGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKTWYVVP 216
Query: 310 GSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFP 369
H LE+ R+ P L V +SP+VLK G+P + Q +GEF++TFP
Sbjct: 217 PEHGQRLERLARELFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRITQEAGEFMVTFP 276
Query: 370 RAYHSGFNCGFNCAEAVNVAPVDWLAHGQQA 400
YH+GFN GFNCAEA+N A W+ +G+ A
Sbjct: 277 YGYHAGFNHGFNCAEAINFATPRWIDYGKMA 307
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 10/65 (15%)
Query: 34 VFYPTVEEFEDTLGYIAKIRSK-AESFGICRIVPPSSWTPPCPLKAKNIWENAK---FST 89
+F+PT EEF D YIA + S+ A G+ +I+PP W KA+ ++N +T
Sbjct: 20 IFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEW------KARETYDNISEILIAT 73
Query: 90 RIQQI 94
+QQ+
Sbjct: 74 PLQQV 78
>pdb|3DXU|A Chain A, The Crystal Structure Of Core Jmjd2d Complexed With Fe And
N- Oxalylglycine
Length = 337
Score = 149 bits (377), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 110/211 (52%), Gaps = 25/211 (11%)
Query: 192 DIEGEYW--RIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNN 249
D+E +YW RI P YGAD+ F + + Q WNL +
Sbjct: 113 DLERKYWKNRIYNSPI------YGADISGSLF------------DENTKQ-----WNLGH 149
Query: 250 LPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVP 309
L + + G I GV P+LY GM ++F WH ED LYS+NYLH G+PK WY VP
Sbjct: 150 LGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKTWYVVP 209
Query: 310 GSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFP 369
H LE+ R+ P L V +SP+VLK G+P + Q +GEF++TFP
Sbjct: 210 PEHGQRLERLARELFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRITQEAGEFMVTFP 269
Query: 370 RAYHSGFNCGFNCAEAVNVAPVDWLAHGQQA 400
YH+GFN GFNCAEA+N A W+ +G+ A
Sbjct: 270 YGYHAGFNHGFNCAEAINFATPRWIDYGKMA 300
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 10/65 (15%)
Query: 34 VFYPTVEEFEDTLGYIAKIRSK-AESFGICRIVPPSSWTPPCPLKAKNIWENAK---FST 89
+F+PT EEF D YIA + S+ A G+ +I+PP W KA+ ++N +T
Sbjct: 13 IFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEW------KARETYDNISEILIAT 66
Query: 90 RIQQI 94
+QQ+
Sbjct: 67 PLQQV 71
>pdb|4HON|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An
H3k9me3 Peptide And 2-oxoglutarate
pdb|4HON|B Chain B, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An
H3k9me3 Peptide And 2-oxoglutarate
Length = 330
Score = 149 bits (377), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 110/211 (52%), Gaps = 25/211 (11%)
Query: 192 DIEGEYW--RIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNN 249
D+E +YW RI P YGAD+ F + + Q WNL +
Sbjct: 109 DLERKYWKNRIYNSPI------YGADISGSLF------------DENTKQ-----WNLGH 145
Query: 250 LPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVP 309
L + + G I GV P+LY GM ++F WH ED LYS+NYLH G+PK WY VP
Sbjct: 146 LGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKTWYVVP 205
Query: 310 GSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFP 369
H LE+ R+ P L V +SP+VLK G+P + Q +GEF++TFP
Sbjct: 206 PEHGQRLERLARELFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRITQEAGEFMVTFP 265
Query: 370 RAYHSGFNCGFNCAEAVNVAPVDWLAHGQQA 400
YH+GFN GFNCAEA+N A W+ +G+ A
Sbjct: 266 YGYHAGFNHGFNCAEAINFATPRWIDYGKMA 296
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 10/65 (15%)
Query: 34 VFYPTVEEFEDTLGYIAKIRSK-AESFGICRIVPPSSWTPPCPLKAKNIWENAK---FST 89
+F+PT EEF D YIA + S+ A G+ +I+PP W KA+ ++N +T
Sbjct: 9 IFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEW------KARETYDNISEILIAT 62
Query: 90 RIQQI 94
+QQ+
Sbjct: 63 PLQQV 67
>pdb|4HOO|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme
pdb|4HOO|B Chain B, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme
Length = 330
Score = 149 bits (376), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 110/211 (52%), Gaps = 25/211 (11%)
Query: 192 DIEGEYW--RIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNN 249
D+E +YW RI P YGAD+ F + + Q WNL +
Sbjct: 109 DLERKYWKNRIYNSPI------YGADISGSLF------------DENTKQ-----WNLGH 145
Query: 250 LPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVP 309
L + + G I GV P+LY GM ++F WH ED LYS+NYLH G+PK WY VP
Sbjct: 146 LGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKTWYVVP 205
Query: 310 GSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFP 369
H LE+ R+ P L V +SP+VLK G+P + Q +GEF++TFP
Sbjct: 206 PEHGQRLERLARELFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRITQEAGEFMVTFP 265
Query: 370 RAYHSGFNCGFNCAEAVNVAPVDWLAHGQQA 400
YH+GFN GFNCAEA+N A W+ +G+ A
Sbjct: 266 YGYHAGFNHGFNCAEAINFATPRWIDYGKMA 296
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 10/65 (15%)
Query: 34 VFYPTVEEFEDTLGYIAKIRSK-AESFGICRIVPPSSWTPPCPLKAKNIWENAK---FST 89
+F+PT EEF D YIA + S+ A G+ +I+PP W KA+ ++N +T
Sbjct: 9 IFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEW------KARETYDNISEILIAT 62
Query: 90 RIQQI 94
+QQ+
Sbjct: 63 PLQQV 67
>pdb|3OPT|A Chain A, Crystal Structure Of The Rph1 Catalytic Core With
A-Ketoglutarate
pdb|3OPW|A Chain A, Crystal Structure Of The Rph1 Catalytic Core
Length = 373
Score = 132 bits (332), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 107/208 (51%), Gaps = 25/208 (12%)
Query: 193 IEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNLPR 252
+E YW+ + T YGAD F G ++ WN+ LP
Sbjct: 168 LEEYYWKTLNFTTP----MYGADTPGSIFPEG-----------------LNVWNVAKLP- 205
Query: 253 LPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSH 312
++L + + GV +LY G+ +SF WH+ED LYS+NY+H+G PK WY +P
Sbjct: 206 ---NILDHMETKVPGVNDSYLYAGLWKASFSWHLEDQDLYSINYIHFGAPKQWYSIPQED 262
Query: 313 ASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAY 372
K M++ P+ + P+ L + SP +L+ G+ +V H GEF++T+P Y
Sbjct: 263 RFKFYKFMQEQFPEEAKNCPEFLRHKMFLASPKLLQENGIRCNEIVHHEGEFMITYPYGY 322
Query: 373 HSGFNCGFNCAEAVNVAPVDWLAHGQQA 400
H+GFN G+N AE+VN A +WL G++A
Sbjct: 323 HAGFNYGYNLAESVNFALEEWLPIGKKA 350
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 28 IIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPP--CPLKAKNIWENA 85
I+ PVF PT E+FED Y I G+ +++PP W P A+ + +
Sbjct: 10 IVGGVPVFKPTYEQFEDFYAYCKAINKYGMKSGVVKVIPPKEWKDKLDLPYSAETL-QKI 68
Query: 86 KFSTRIQQ 93
K + IQQ
Sbjct: 69 KIKSPIQQ 76
>pdb|2WZO|A Chain A, The Structure Of The Fyr Domain
Length = 146
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 823 KQAIFPKGFRSRVNFYSVLNPEKVCNYISEVLDAGLLGPLFKVTLEECPSETFVNVSAQK 882
+ AI+P G+ S + S+ P++ C Y ++ D G+ P F++ E+ P V+ SA
Sbjct: 30 ESAIYPVGYCSTRIYASMKCPDQKCLYTCQIKDGGVQ-PQFEIVPEDDPQNAIVSSSADA 88
Query: 883 CWEMVLQRLNQEIERQGGLHERGLPHPQSLQSIDGLEMFGFLSSPIIQAIEALDPNHLCM 942
C +L+ ++ + G L LP G + FGF I I++ C+
Sbjct: 89 CHAELLRTISTTM---GKLMPNLLPA--------GADFFGFSHPAIHNLIQSCPGARKCI 137
Query: 943 EY 944
Y
Sbjct: 138 NY 139
>pdb|1CLE|A Chain A, Structure Of Uncomplexed And Linoleate-Bound Candida
Cylindracea Cholesterol Esterase
pdb|1CLE|B Chain B, Structure Of Uncomplexed And Linoleate-Bound Candida
Cylindracea Cholesterol Esterase
Length = 534
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 500 YDLHLSAAGCKCSPDRFACLKHAN 523
YDL +S+AGC + D+ ACL+ A+
Sbjct: 259 YDLFVSSAGCGSASDKLACLRSAS 282
>pdb|1LLF|A Chain A, Cholesterol Esterase (Candida Cylindracea) Crystal
Structure At 1.4a Resolution
pdb|1LLF|B Chain B, Cholesterol Esterase (Candida Cylindracea) Crystal
Structure At 1.4a Resolution
Length = 534
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 500 YDLHLSAAGCKCSPDRFACLKHAN 523
YDL +S+AGC + D+ ACL+ A+
Sbjct: 259 YDLFVSSAGCGSASDKLACLRSAS 282
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 695 IENLKAHLSACYQEKVLCSGTVKEQ 719
+++L+ H+SA QE VL SGT+KE
Sbjct: 412 LKDLRGHISAVPQETVLFSGTIKEN 436
>pdb|1LSH|A Chain A, Lipid-Protein Interactions In Lipovitellin
Length = 1056
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 986 DQNSPSGQNSVEEEAQLVLRGLFQKASPKELKVMQRILYSEGRS-DEW 1032
D S S + EEE L L+ L P +K +QR L +G+S DE+
Sbjct: 443 DLLSQSSDRAKEEEIVLALKALGNAGQPNSIKKIQRFLPGQGKSLDEY 490
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,871,807
Number of Sequences: 62578
Number of extensions: 1303965
Number of successful extensions: 2631
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2591
Number of HSP's gapped (non-prelim): 30
length of query: 1048
length of database: 14,973,337
effective HSP length: 109
effective length of query: 939
effective length of database: 8,152,335
effective search space: 7655042565
effective search space used: 7655042565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)