Query 001595
Match_columns 1048
No_of_seqs 356 out of 802
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 04:42:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001595.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001595hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1246 DNA-binding protein ju 100.0 5.2E-78 1.1E-82 744.9 19.7 763 11-949 69-868 (904)
2 KOG0958 DNA damage-responsive 100.0 8.4E-73 1.8E-77 651.9 16.0 307 29-418 12-321 (690)
3 PF02373 JmjC: JmjC domain, hy 100.0 8.1E-32 1.8E-36 253.6 9.8 114 272-388 1-114 (114)
4 smart00542 FYRC "FY-rich" doma 99.8 1.5E-21 3.2E-26 179.7 7.2 81 862-949 1-81 (86)
5 PF05965 FYRC: F/Y rich C-term 99.8 7.3E-21 1.6E-25 174.5 5.5 82 859-947 2-83 (86)
6 smart00545 JmjN Small domain f 99.8 1.5E-19 3.2E-24 145.3 4.6 42 31-72 1-42 (42)
7 PF05964 FYRN: F/Y-rich N-term 99.7 2E-18 4.3E-23 146.1 5.6 52 804-855 2-54 (54)
8 PF02375 JmjN: jmjN domain; I 99.6 2.8E-16 6E-21 121.0 2.8 34 33-66 1-34 (34)
9 PF02928 zf-C5HC2: C5HC2 zinc 99.5 6E-15 1.3E-19 125.0 4.1 54 495-548 1-54 (54)
10 smart00541 FYRN "FY-rich" doma 99.5 1.5E-14 3.2E-19 117.8 4.7 41 814-854 2-43 (44)
11 smart00558 JmjC A domain famil 99.2 3.6E-12 7.7E-17 108.2 3.5 56 244-302 2-57 (57)
12 KOG1246 DNA-binding protein ju 98.0 2.6E-06 5.7E-11 107.9 3.3 176 242-425 604-788 (904)
13 PF13621 Cupin_8: Cupin-like d 96.3 0.0047 1E-07 65.5 5.1 108 270-391 132-248 (251)
14 KOG2131 Uncharacterized conser 95.9 0.016 3.6E-07 66.1 6.8 105 272-392 201-305 (427)
15 KOG1356 Putative transcription 93.9 0.074 1.6E-06 66.2 5.5 113 303-416 740-859 (889)
16 KOG2130 Phosphatidylserine-spe 92.3 0.082 1.8E-06 59.6 2.5 131 255-395 166-303 (407)
17 PF08007 Cupin_4: Cupin superf 85.2 3.2 6.9E-05 47.5 8.6 104 269-397 114-218 (319)
18 smart00154 ZnF_AN1 AN1-like Zi 45.5 11 0.00023 30.6 1.1 33 495-529 1-35 (39)
19 COG2461 Uncharacterized conser 30.8 30 0.00064 41.0 2.0 43 30-74 198-240 (409)
20 KOG4611 Uncharacterized conser 26.2 46 0.00099 38.9 2.4 27 513-540 63-89 (747)
No 1
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=100.00 E-value=5.2e-78 Score=744.94 Aligned_cols=763 Identities=35% Similarity=0.502 Sum_probs=566.4
Q ss_pred cccccccccCCcccCCCCCCCCCccCCCHHhhhCHHHHHHHHHHhhhhcCceEEcCCCCCCCCCCCcccccccccccccc
Q 001595 11 HIKEISARWDPAEACRPIIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPCPLKAKNIWENAKFSTR 90 (1048)
Q Consensus 11 ~~~~~~~rw~p~~~~r~~i~eaPVF~PT~EEF~Dpl~YI~~I~~~AekyGIcKIVPP~~WkPpc~L~ek~i~~~~kF~tr 90 (1048)
...++...+.+..+.|......+.+.+....|.|...|+..++..++.||+|.++||..|+|++++..+..|...+|.++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (904)
T KOG1246|consen 69 TLEVDFYSDLTELAKRVISNLKPLLLSIPKNFKDKLLYISKLKLRAEFYGICEKLPPPTSKPKEPLKGKQNWFSSGFDQR 148 (904)
T ss_pred ccccchhhhhhhhhhcccccccccccccCccccchhhccccccccccccccccccCCcccCCCCcCCcccccccCCCCCc
Confidence 34455666777777788888999999999999999999999999999999999999999999999999999999999999
Q ss_pred -chhhhhhcccccchhhhh------h-hhhhhcccccccccccC-----CCCcccccccccccccccccCC-CCCHHHHH
Q 001595 91 -IQQIDLLQNREPMRKKIR------S-RKRKRRRQSRMGSTRRN-----ANSSSEANAAETDEKFGFQSGP-DLTLEGFQ 156 (1048)
Q Consensus 91 -iQ~v~~lq~r~p~~k~~~------~-~k~k~~~~~~~~~~~r~-----~~s~s~~~~~~~~e~fgF~~g~-~~tL~~F~ 156 (1048)
+|.++..+.+...+.+.. + .+..+......+..+.. .+++-........+.|||..|. +||+..|+
T Consensus 149 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~yt~~~f~ 228 (904)
T KOG1246|consen 149 EVEFIDYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPNYKFGFEQGSREYTLPKFE 228 (904)
T ss_pred ccccccchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCcccccccCCcccccCcCCCCCccccchhh
Confidence 998887776655543321 1 11111111122211110 0011011223446889998876 99999999
Q ss_pred HHHHHHHHhhhCCCCCCCCCcCCccccccCCCCHHHHHHHhhhhccCCCCceeeeecCCCCCCCCCCCCCCCCCCCCC-C
Q 001595 157 KYAQNFKECYFGMNDSKEDVKSDGFEHKRLEPSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTE-S 235 (1048)
Q Consensus 157 ~~A~~fk~~~f~~~~~~~~~~~~~~~~~~~~ps~e~vE~efWr~V~~~~~~veV~YGaDl~s~~~GSgFp~~~~~~~~-~ 235 (1048)
++|+.|+..||.+..+.. ++.+++|++||++|...+..++|+||+|+.+..+|+|||........ .
T Consensus 229 ~~~~~~~~~~~~~~~~~~-------------~~~~~vE~e~w~~v~~~~~~~~~~~g~d~~~~~~~s~~~~~~~~~~~~~ 295 (904)
T KOG1246|consen 229 EYADNFKKDYFPKSKNSP-------------DSTEDVEKEFWRLVASNLESVEVLYGADLSTKEFGSGFPKSASGPLLGS 295 (904)
T ss_pred hHhhhhhccccccccCCC-------------CchHHHHHHHHHhhcccccceeeeeccchhhccccccccccCCCCCCCc
Confidence 999999999998865432 33789999999999999889999999999999999999987654333 4
Q ss_pred chhhhhccCCCCCCCCCCCCCcccccCCCCCCcccceEEeecccccccccccCccceeeeeeeeCCceeEEEecCccHHH
Q 001595 236 DLDQYAMSGWNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHAST 315 (1048)
Q Consensus 236 ~~~~y~~~~WNLnnLp~l~gSLL~~~~~~I~GVttP~LYiGM~fStf~WH~ED~~LySINYlH~GapK~WY~VP~~~a~k 315 (1048)
..++|+.++|||+|+|++++|+|+|.+.+|+|+++||+|+||+||+||||+|||++||+||+|+|+||+||+||++++++
T Consensus 296 ~~~~y~~s~wnL~~i~~~~~svl~~~~~di~g~~~p~l~~gm~fs~~~wh~ed~~~~slny~h~g~pk~wy~v~~~~ae~ 375 (904)
T KOG1246|consen 296 EAEKYSNSGWNLNNIPRLEGSVLSHIDTDISGVTVPWLYIGMCFSTFCWHVEDHSLYSLNYLHLGEPKTWYSVPGSAAEK 375 (904)
T ss_pred chhhhccCcccccccccCCccccccccCCcCccccccccccccccccccccCCccccccchhhcCCceEEEecCcchHHH
Confidence 66899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCchhhccCchhhhhcccccChhhHhhcCCCeeEeecCCCcEEEEcCCceeeeeccccceeeeecccccchhh
Q 001595 316 LEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLA 395 (1048)
Q Consensus 316 fE~l~k~~~p~lf~~~pd~L~h~~t~isP~~L~~~GIpv~r~vQ~pGEFVVTfP~aYHsgfn~GfN~aEAVNFA~~dWL~ 395 (1048)
||++|++..|+++..+|++++.+.++++|..|..+||||++++|+|||||||||++||+|||+|||++|+|||||.+||+
T Consensus 376 ~e~~~~~~~p~~~~~~pd~~~~~~~~~~p~~l~~~gvpv~~~~q~~ge~vitfP~~Y~~g~~~gf~~~e~vn~ap~dwl~ 455 (904)
T KOG1246|consen 376 FEKAMNKLSPGLFIEQPDLLHALVTLMSPNFLTDEGVPVYRTVQNPGEFVITFPRAYHAGFNCGFNFAEAVNFAPSDWLP 455 (904)
T ss_pred HHHHHHhhCCcccccCcccccccccccCcchhhcCCCCceecccCCCCEeecCCCeeeecccccccHHHhcccCCcchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHhhhhhc-ccCCCCcchhhccccchhHHHHHHHHHHHHHhhcccC
Q 001595 396 HGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQ-KKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKL 474 (1048)
Q Consensus 396 ~g~~a~e~y~~~~r~~~fS~d~LL~~~A~~~~~~l~e~~l~~-k~~~~~~~~~~~c~~~~il~~~~k~r~~~e~~~~~~l 474 (1048)
+|+.++++|+...+.++|||++|++.+|...+...+.+.+.. ++......|...+...++....+..+ ++.....
T Consensus 456 ~gr~~~~~~~~~~~~~lfs~~~l~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~- 531 (904)
T KOG1246|consen 456 VGRGAAEAYSLLLRLSLFSHDELALLNAENPVKIRKQLSLASDKNDDLAGESKKWLEESGRSKLVIEKY---ERYLLES- 531 (904)
T ss_pred HHHHHHHHHHhhccCCccCHHHHHHhccccchhhhhhhccccccchhhhchhhhhhhhcccchhHHHHH---HHHHHHh-
Confidence 999999999999999999999999999998877555443322 22222233433333333332222111 1111111
Q ss_pred chhhhhhhcccccCCcccccccccccccccccccccccCCccccccchhhhcCCCCCceEEEEEcCHHHHHHHHHHHHhc
Q 001595 475 PSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGG 554 (1048)
Q Consensus 475 ~~~~~~~k~~~~~d~~~er~C~~Ck~~~fLS~V~C~C~~~~~~CL~Ha~~lCsC~~~~~~llyRYt~~EL~~lv~~le~~ 554 (1048)
.. |+..+++|..|+++||++++.|+|.+.++.||.|..++|+|....++++|||++++|..++.+++++
T Consensus 532 --------~~---~~~~~~~c~~ck~~~~l~~~~~~c~~~~~~cl~h~~~~~~~~~~~~~l~~r~~id~l~~~~~k~~~~ 600 (904)
T KOG1246|consen 532 --------LP---DDMLERQCEACKRNCFLSEIECKCKPKKLECLSHYKKLCSCPGTDKTLLLRTNIDELDALLDKLQLH 600 (904)
T ss_pred --------cc---chhhHHHHHHhcccHhhhhhhhcccccccccccchhhcCCCCccccEEEEecchhHHHHHhhhhhhh
Confidence 10 2223899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhccCCCCCCcccccccccccCcccccccccCCCCCcccccccCCCCccCCCcccccccccCCCCCC
Q 001595 555 LDALKELASKNFKWADCSDTDGGLVKMDMESEVFPMDCCEQKESSSSSPRVENIVEGNGPCCSRSHVSSEVVQSEPQRGT 634 (1048)
Q Consensus 555 ~~~~~~W~~~~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1048)
...+..|..++.+++.+....+ ...++...|... ..+. +|. +.
T Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~e~~~------------------~~n~--------------~~~----~~ 643 (904)
T KOG1246|consen 601 ELSKLPWFGRVDGALPSLGFRG-ANLLEHAGEKIL------------------GMNT--------------VQC----YM 643 (904)
T ss_pred hhhcchhhhhhhhhhcccccCC-cchHHHHHHHhh------------------cccc--------------cce----ee
Confidence 9999999999999998766542 000000000000 0000 000 00
Q ss_pred CCCccccccccCCCCCCCcccccccccccccceeecccCCcCCCCCccccccccCCCchhHHHHhhhhhhhhhhhhcccc
Q 001595 635 SGLSASHVSVNSHNEGNDETQVMNKKAKVKHEVCIDLNMDVIPDGNESKLLLSDSHGKEAIENLKAHLSACYQEKVLCSG 714 (1048)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1048)
..+. ..+.. . ..+.+..|+++|++.. + |+-..|.+.+
T Consensus 644 k~~~---~rt~~----------~---~~n~~~~s~~~n~~p~-~--------------------------~~~~~v~~~~ 680 (904)
T KOG1246|consen 644 KVPG---SRTTA----------H---QENSALASININLGPG-D--------------------------CVWFAVPLEY 680 (904)
T ss_pred cccc---ccchh----------H---HHHHHHhhhhccCCcc-c--------------------------ceeeecccch
Confidence 0000 00000 0 0222334455554432 0 0000111000
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCCCCcccccCccccccccccccccCCCcccCCCccccccccccccCCccccccc
Q 001595 715 TVKEQDTMQVRSDCNSSNSHKDPNKDQPSCSRVIEGTCSFDVKKLFGVDLSLPHQQSKLPLVDFLKTDTINGSNVRTSVT 794 (1048)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1048)
.-. + ...+... ++...
T Consensus 681 ~~~---------------~---------------~~~~~~~-----------~~~~~----------------------- 696 (904)
T KOG1246|consen 681 WGV---------------V---------------EDACEKH-----------NLKYS----------------------- 696 (904)
T ss_pred hHH---------------H---------------HHHHhhc-----------ccccc-----------------------
Confidence 000 0 0000000 00000
Q ss_pred ccccccccccceeEEEeeeeecCCCcccCCcccCCCeEEEEEeccccCC-CceeEEEEEEeeCCCCCceEEEEeC---CC
Q 001595 795 DQRFQKKLETCVEPINFGCVMCGKLWCSKQAIFPKGFRSRVNFYSVLNP-EKVCNYISEVLDAGLLGPLFKVTLE---EC 870 (1048)
Q Consensus 795 ~~~~p~~~~~sv~llsLG~Iv~dr~fHse~yIyPvGF~S~R~y~S~~dP-~~~c~Y~ceIlD~G~~~PlFrVt~e---d~ 870 (1048)
+. .+.++.+...+|.++....|.+.....+-++.++..+.++.+| +...+|+.++++++...|+|++... ..
T Consensus 697 ~~----~~w~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~v~~~~~~~~~~~l~~~~~~~~~~~ 772 (904)
T KOG1246|consen 697 DS----SVWPSSEEELLNLVIPVQKFIQKAGDLVYVGNGTVHWVQVLGFCINVSWNVSESTFAQLALALFRHDHNIESKH 772 (904)
T ss_pred ch----hccchhhHHHHhccchHHHHHhccccccccCCceEEEeeecCccccceecccccchhhhhcchhhhhhhhhccC
Confidence 00 0000144456777787788999999999999999999999999 9999999999999988999999988 66
Q ss_pred CC---CeEEcCChhHHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCcccccCCCCHHHH--------------HHHH
Q 001595 871 PS---ETFVNVSAQKCWEMVLQRLNQEIERQGGLHERGLPHPQSLQSIDGLEMFGFLSSPII--------------QAIE 933 (1048)
Q Consensus 871 P~---~~~~g~Spt~cW~~VlkrIn~~i~~r~~~G~~~Lp~l~~~~sisG~emFGls~P~I~--------------~lIe 933 (1048)
+. .++.......+|.++..+...++.+........+..++....+++-.++++..|.+. .+|.
T Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~c~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 852 (904)
T KOG1246|consen 773 PSSVPMSFKVWEMAEKEVMVSDRKRFEAKKLCLKRSLAKSQLECELAIDEFHEICVAVPEKVELSHLCSRCERPRLAVIF 852 (904)
T ss_pred cccchhhhhhhhHhhcchhhcchhHHHHHHHhhhhhhhhhhhhHHHHHhhhhheecccCCCccccchhhhccccchheee
Confidence 66 778889999999999988777766511111222222335567899999999999887 4555
Q ss_pred hCCCCccccccccccc
Q 001595 934 ALDPNHLCMEYWNHKL 949 (1048)
Q Consensus 934 sLP~a~~C~~Y~~~~~ 949 (1048)
.+....+...||-...
T Consensus 853 ~~~~~~~~~~~~~~~~ 868 (904)
T KOG1246|consen 853 VLDPNLKPTPYRVLEN 868 (904)
T ss_pred eeccCCCCCccccccc
Confidence 5555555555555543
No 2
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair]
Probab=100.00 E-value=8.4e-73 Score=651.93 Aligned_cols=307 Identities=37% Similarity=0.694 Sum_probs=263.7
Q ss_pred CCCCCccCCCHHhhhCHHHHHHHHHHhh-hhcCceEEcCCCCCCCCCCCccccccccccccccchhhhhhcccccchhhh
Q 001595 29 IDEAPVFYPTVEEFEDTLGYIAKIRSKA-ESFGICRIVPPSSWTPPCPLKAKNIWENAKFSTRIQQIDLLQNREPMRKKI 107 (1048)
Q Consensus 29 i~eaPVF~PT~EEF~Dpl~YI~~I~~~A-ekyGIcKIVPP~~WkPpc~L~ek~i~~~~kF~triQ~v~~lq~r~p~~k~~ 107 (1048)
.++.||||||||||+||.+||++|+.+| +++||+|||||++|+|+--.+ +| +++++++.|||+...|.+.++
T Consensus 12 s~~I~tF~PtmeEF~dF~~yi~~IEs~G~h~aGlaKVipPkeWk~r~~~~--di-~di~I~~PiqQ~v~g~~G~F~---- 84 (690)
T KOG0958|consen 12 SDGIPTFYPTMEEFADFSAYIAYIESQGAHRAGLAKVIPPKEWKPRLMYD--DI-DDIKIPAPIQQVVTGQGGLFT---- 84 (690)
T ss_pred CCCcceeCcCHHHHHhHHHHHHHHHhccchhcCeeeeeCCccCCcccccC--ch-hheecChhHHHHhhccCceEE----
Confidence 6789999999999999999999999996 569999999999999986554 33 678999999998766544332
Q ss_pred hhhhhhhcccccccccccCCCCcccccccccccccccccCCCCCHHHHHHHHHHHHHhhhCCCCCCCCCcCCccccccCC
Q 001595 108 RSRKRKRRRQSRMGSTRRNANSSSEANAAETDEKFGFQSGPDLTLEGFQKYAQNFKECYFGMNDSKEDVKSDGFEHKRLE 187 (1048)
Q Consensus 108 ~~~k~k~~~~~~~~~~~r~~~s~s~~~~~~~~e~fgF~~g~~~tL~~F~~~A~~fk~~~f~~~~~~~~~~~~~~~~~~~~ 187 (1048)
+|+.+..+.|++.+|+++|+.- +| ..+ +..
T Consensus 85 ---------------------------------~~Ni~~~kam~v~q~r~lAns~--~y-~tp--------------r~~ 114 (690)
T KOG0958|consen 85 ---------------------------------QYNIQDKKAMTVRQFRDLANSD--KY-CTP--------------RGS 114 (690)
T ss_pred ---------------------------------EeehhhccccChhhhhhhhhhc--cc-CCC--------------ccc
Confidence 3344556789999999999972 22 111 002
Q ss_pred CCHHHHHHHhhhhccCCCCceeeeecCCCCCCCCCCCCCCCCCCCCCCchhhhhccCCCCCCCCCCCCCcccccCCCCCC
Q 001595 188 PSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNLPRLPGSVLAFEGSDISG 267 (1048)
Q Consensus 188 ps~e~vE~efWr~V~~~~~~veV~YGaDl~s~~~GSgFp~~~~~~~~~~~~~y~~~~WNLnnLp~l~gSLL~~~~~~I~G 267 (1048)
-..+|+|+.||+.+.. ..+.||||+.+++|.. ....||+++|+...+- ...+..|.|
T Consensus 115 ~d~~dle~kYWKnltf----~~PiYGaD~~gSi~~~-----------------~~~~WNi~~L~tild~--~~~~~~i~g 171 (690)
T KOG0958|consen 115 QDFEDLEQKYWKNLTF----DSPIYGADINGSIYDE-----------------DLDEWNIARLDTILDL--EECGIIIEG 171 (690)
T ss_pred ccHHHHHHHHHhcccC----CCCcccccCCCccCcc-----------------cccccccccccchhch--hhcceeecc
Confidence 3478999999999985 4789999998766532 2568999999874221 578889999
Q ss_pred cccceEEeecccccccccccCccceeeeeeeeCCceeEEEecCccHHHHHHHHHHhCchhhccCchhhhhcccccChhhH
Q 001595 268 VLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVL 347 (1048)
Q Consensus 268 VttP~LYiGM~fStf~WH~ED~~LySINYlH~GapK~WY~VP~~~a~kfE~l~k~~~p~lf~~~pd~L~h~~t~isP~~L 347 (1048)
|||||||+|||.++|+||+||++||||||+|||+||+||+||++|.++||++|.+.+|+...+|++||+|++++++|.+|
T Consensus 172 vNt~yLyfGmwKttFaWHtEdmDLySINyLHFGaPK~WYaIP~eh~~rfekla~~~fp~~~~~C~aFLRHK~~LiSP~~L 251 (690)
T KOG0958|consen 172 VNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGAPKQWYAIPPEHGDRFEKLASELFPDSSQGCPAFLRHKMTLISPSVL 251 (690)
T ss_pred cCccceeeeeeecccccccCCccceeeeeeecCCCcceeecCHHHHHHHHHHHHhhCCccccCCHHHHhhcccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCeeEeecCCCcEEEEcCCceeeeeccccceeeeecccccchhhhHHHHHHHHHhccCCCC--CcHHHH
Q 001595 348 KAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTS--LSHDKL 418 (1048)
Q Consensus 348 ~~~GIpv~r~vQ~pGEFVVTfP~aYHsgfn~GfN~aEAVNFA~~dWL~~g~~a~e~y~~~~r~~~--fS~d~L 418 (1048)
+++|||+++++|++||||||||++||+|||+||||+|++|||++.|++||+.|..+- |+..+ ||++.+
T Consensus 252 kqnGIpfn~ivqeagEFmITFPygyHaGFN~GfN~aES~nFat~Rwi~YgK~a~~C~---C~~d~vkism~~f 321 (690)
T KOG0958|consen 252 KQNGIPFNRIVQEAGEFMITFPYGYHAGFNHGFNCAESTNFATPRWIDYGKQALLCS---CRSDSVKISMDPF 321 (690)
T ss_pred HHcCCCcceeeecCCcEEEecCcccccccccchhhhhhhcccchhhhhhcccccccc---cccceeeeechhh
Confidence 999999999999999999999999999999999999999999999999999999874 34433 455544
No 3
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.97 E-value=8.1e-32 Score=253.56 Aligned_cols=114 Identities=46% Similarity=0.774 Sum_probs=101.4
Q ss_pred eEEeecccccccccccCccceeeeeeeeCCceeEEEecCccHHHHHHHHHHhCchhhccCchhhhhcccccChhhHhhcC
Q 001595 272 WLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEG 351 (1048)
Q Consensus 272 ~LYiGM~fStf~WH~ED~~LySINYlH~GapK~WY~VP~~~a~kfE~l~k~~~p~lf~~~pd~L~h~~t~isP~~L~~~G 351 (1048)
|||+||.||+++||+||+.++|+||+|+|++|+||+||++++++|++++++. ...++++++.+...++.|+.|+++|
T Consensus 1 ~~~ig~~~s~t~~H~e~~~~~sv~~~~~g~~k~W~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~l~~~g 77 (114)
T PF02373_consen 1 WLYIGMKGSYTPWHIEDNGLSSVNYHHFGGSKVWYIVPPEDADKFEKFLRSK---ESQNCPQFLDHKNIFVSPEQLKKAG 77 (114)
T ss_dssp EEEEE-TTEEEEEEE-GGG-EEEEEEEEESEEEEEEE-GGGHHHHHHHHHHH---HHHHSTTGGCTGGEEEGHHHHHHTT
T ss_pred CEEEeCCCcCCCcEecCCCCceeeeeccCcceEeEEechhhhhhHHHHHhhc---ccccccccccccccccceeeeeccC
Confidence 8999999999999999999999999999999999999999999999999988 3467888999999999999999999
Q ss_pred CCeeEeecCCCcEEEEcCCceeeeeccccceeeeecc
Q 001595 352 VPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNV 388 (1048)
Q Consensus 352 Ipv~r~vQ~pGEFVVTfP~aYHsgfn~GfN~aEAVNF 388 (1048)
||+++++|+|||||||+||+||+++|.|+|++|||||
T Consensus 78 i~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 78 IPVYRFVQKPGEFVFIPPGAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp S--EEEEEETT-EEEE-TT-EEEEEESSSEEEEEEEE
T ss_pred cccccceECCCCEEEECCCceEEEEeCCceEEEEecC
Confidence 9999999999999999999999999999999999998
No 4
>smart00542 FYRC "FY-rich" domain, C-terminal region. is sometimes closely juxtaposed with the N-terminal region (FYRN), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=99.84 E-value=1.5e-21 Score=179.69 Aligned_cols=81 Identities=36% Similarity=0.658 Sum_probs=71.1
Q ss_pred eEEEEeCCCCCCeEEcCChhHHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCcccccCCCCHHHHHHHHhCCCCccc
Q 001595 862 LFKVTLEECPSETFVNVSAQKCWEMVLQRLNQEIERQGGLHERGLPHPQSLQSIDGLEMFGFLSSPIIQAIEALDPNHLC 941 (1048)
Q Consensus 862 lFrVt~ed~P~~~~~g~Spt~cW~~VlkrIn~~i~~r~~~G~~~Lp~l~~~~sisG~emFGls~P~I~~lIesLP~a~~C 941 (1048)
+|||+++|+|+++|+|.||++||.+|+++|+++++++ |...+ ....+||++||||++|+|++|||+||||++|
T Consensus 1 lF~v~~~~~~~~~~~~~S~~~~W~~vl~~v~~~r~~~---~~~~~----~~~~isG~~mFGls~p~V~~lie~Lpga~~C 73 (86)
T smart00542 1 LFRVEIESDPDEVFKGESPEKCWEMVLERVQEARIVA---RLLQL----LPEGVSGEDMFGLSSPAVVKLIEQLPGVHQC 73 (86)
T ss_pred CeEEEEecCCCCeEEeCCHHHHHHHHHHHHHHHHHHc---ccCCC----CCCCCCcHHHhCCCcHHHHHHHHhCCCchhh
Confidence 6999999999999999999999999999999996543 22222 3567899999999999999999999999999
Q ss_pred cccccccc
Q 001595 942 MEYWNHKL 949 (1048)
Q Consensus 942 ~~Y~~~~~ 949 (1048)
++||+...
T Consensus 74 ~~Y~~~~~ 81 (86)
T smart00542 74 TNYWFRYH 81 (86)
T ss_pred hhhhhccC
Confidence 99999843
No 5
>PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=99.82 E-value=7.3e-21 Score=174.49 Aligned_cols=82 Identities=33% Similarity=0.515 Sum_probs=60.1
Q ss_pred CCceEEEEeCCCCCCeEEcCChhHHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCcccccCCCCHHHHHHHHhCCCC
Q 001595 859 LGPLFKVTLEECPSETFVNVSAQKCWEMVLQRLNQEIERQGGLHERGLPHPQSLQSIDGLEMFGFLSSPIIQAIEALDPN 938 (1048)
Q Consensus 859 ~~PlFrVt~ed~P~~~~~g~Spt~cW~~VlkrIn~~i~~r~~~G~~~Lp~l~~~~sisG~emFGls~P~I~~lIesLP~a 938 (1048)
++|+|+||++|+|+..|+|.||++||++|+++|++. |...+.. .....+++|++||||++|.|++|||+||||
T Consensus 2 ~~P~F~Vt~~d~p~~~~~g~s~~~~W~~i~~~v~~~---r~~~~~~----~~~~~~isG~~~FGls~p~V~~lie~Lp~a 74 (86)
T PF05965_consen 2 GGPLFEVTSEDDPGEVFEGSSPTEAWSEILERVNEA---RKQSGLL----KLPPNSISGPEMFGLSNPAVQRLIESLPGA 74 (86)
T ss_dssp -SEEEEEEETT-GGG-EEESSHHHHHHHHHHHHHHH---HT-----------TT----HHHHHSTTSHHHHHHHTTSTTG
T ss_pred CCCEEEEEECCCCCCEEEeCCHHHHHHHHHHHHHHH---Hhhcccc----ccCCCCCCHhHhcCCCCHHHHHHHHhCCCc
Confidence 579999999999999999999999999999999997 3222311 125689999999999999999999999999
Q ss_pred ccccccccc
Q 001595 939 HLCMEYWNH 947 (1048)
Q Consensus 939 ~~C~~Y~~~ 947 (1048)
++|++|.+.
T Consensus 75 ~~c~~Y~f~ 83 (86)
T PF05965_consen 75 DKCSNYKFR 83 (86)
T ss_dssp GG-TT----
T ss_pred chhhcCCcc
Confidence 999999543
No 6
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=99.78 E-value=1.5e-19 Score=145.29 Aligned_cols=42 Identities=67% Similarity=1.376 Sum_probs=41.1
Q ss_pred CCCccCCCHHhhhCHHHHHHHHHHhhhhcCceEEcCCCCCCC
Q 001595 31 EAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTP 72 (1048)
Q Consensus 31 eaPVF~PT~EEF~Dpl~YI~~I~~~AekyGIcKIVPP~~WkP 72 (1048)
++||||||+|||+||++||++|+++|++|||||||||.+|+|
T Consensus 1 eiPvf~Pt~eEF~Dp~~yi~~i~~~~~~yGi~KIvPP~~w~p 42 (42)
T smart00545 1 EIPVFYPTMEEFKDPLAYISKIRPQAEKYGICKVVPPKSWKP 42 (42)
T ss_pred CCCeEcCCHHHHHCHHHHHHHHHHHHhhCCEEEEECCCCCCc
Confidence 689999999999999999999999999999999999999997
No 7
>PF05964 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The "FY-rich" domain N-terminal region is sometimes closely juxtaposed with the C-terminal region (IPR003889 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=99.74 E-value=2e-18 Score=146.11 Aligned_cols=52 Identities=25% Similarity=0.620 Sum_probs=40.8
Q ss_pred cceeEEEeeeeecCC-CcccCCcccCCCeEEEEEeccccCCCceeEEEEEEee
Q 001595 804 TCVEPINFGCVMCGK-LWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVLD 855 (1048)
Q Consensus 804 ~sv~llsLG~Iv~dr-~fHse~yIyPvGF~S~R~y~S~~dP~~~c~Y~ceIlD 855 (1048)
++|+|+|||+|++++ +|||++||||+||+|+|+|||+.||+++|+|+|||+|
T Consensus 2 gsl~v~sLG~i~~~~~~fh~~~~IyP~Gy~s~R~y~S~~~p~~~~~Y~~~Ild 54 (54)
T PF05964_consen 2 GSLTVHSLGKIVPDRPAFHSERYIYPVGYKSSRLYWSTVDPRRRCRYTCEILD 54 (54)
T ss_dssp TTEEEEEEEE---SSGGGB-SS-B--EEEEEEEEEE-SS-TTSEEEEEEEEE-
T ss_pred CceEEEECeEEeCCCCCccCCCEEeeCCEEEEEEEccccCCCCEEEEEEEEeC
Confidence 479999999999999 8999999999999999999999999999999999997
No 8
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.60 E-value=2.8e-16 Score=121.00 Aligned_cols=34 Identities=59% Similarity=1.248 Sum_probs=27.8
Q ss_pred CccCCCHHhhhCHHHHHHHHHHhhhhcCceEEcC
Q 001595 33 PVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVP 66 (1048)
Q Consensus 33 PVF~PT~EEF~Dpl~YI~~I~~~AekyGIcKIVP 66 (1048)
||||||+|||+||++||++|+++|++||||||||
T Consensus 1 Pvf~Pt~eEF~dp~~yi~~i~~~g~~~Gi~KIvP 34 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIKYISSIEPEGEKYGICKIVP 34 (34)
T ss_dssp EEE---HHHHS-HHHHHHHHHHTTGGGSEEEE--
T ss_pred CcccCCHHHHhCHHHHHHHHHHHHHHCCEEEecC
Confidence 8999999999999999999999999999999998
No 9
>PF02928 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a predicted zinc finger with eight potential zinc ligand binding residues. This domain is found in Jumonji [], and may have a DNA binding function. The mouse jumonji protein is required for neural tube formation, and is essential for normal heart development. It also plays a role in the down-regulation of cell proliferation signalling. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005634 nucleus
Probab=99.52 E-value=6e-15 Score=124.97 Aligned_cols=54 Identities=41% Similarity=0.835 Sum_probs=52.3
Q ss_pred ccccccccccccccccccCCccccccchhhhcCCCCCceEEEEEcCHHHHHHHH
Q 001595 495 CFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLV 548 (1048)
Q Consensus 495 C~~Ck~~~fLS~V~C~C~~~~~~CL~Ha~~lCsC~~~~~~llyRYt~~EL~~lv 548 (1048)
|.+||++||||+|.|+|++++++||+|+.++|+|++++++|+|||+++||++||
T Consensus 1 C~~Ck~~~yLS~v~C~C~~~~~~CL~H~~~~c~C~~~~~~L~yR~~~~eL~~lv 54 (54)
T PF02928_consen 1 CSICKAYCYLSAVTCSCKPDKVVCLRHAKELCSCPCSNHTLRYRYDDEELESLV 54 (54)
T ss_pred CcccCCchhhcccccCCCCCcEEccccchhhcCCCCCCeEEEEeCCHHHHHHhC
Confidence 889999999999999999999999999999999999999999999999999885
No 10
>smart00541 FYRN "FY-rich" domain, N-terminal region. is sometimes closely juxtaposed with the C-terminal region (FYRC), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=99.50 E-value=1.5e-14 Score=117.79 Aligned_cols=41 Identities=34% Similarity=0.683 Sum_probs=36.5
Q ss_pred eecCC-CcccCCcccCCCeEEEEEeccccCCCceeEEEEEEe
Q 001595 814 VMCGK-LWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVL 854 (1048)
Q Consensus 814 Iv~dr-~fHse~yIyPvGF~S~R~y~S~~dP~~~c~Y~ceIl 854 (1048)
++.++ +|||++||||+||+|+|+|||++||+++|+|+|.|.
T Consensus 2 ~~~~~~~fh~~~~IyP~Gy~s~R~y~S~~dp~~~c~Y~c~i~ 43 (44)
T smart00541 2 LPIQGKLFHSEDAIFPVGYKSTRKYWSVKDPNRRCNYSCVID 43 (44)
T ss_pred ccccCCCcccCCEEecCCEEEEEEEecccCCCCEEEEEEEEC
Confidence 34565 799999999999999999999999999999977664
No 11
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=99.25 E-value=3.6e-12 Score=108.17 Aligned_cols=56 Identities=43% Similarity=0.590 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCCCcccccCCCCCCcccceEEeecccccccccccCccceeeeeeeeCCc
Q 001595 244 GWNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDP 302 (1048)
Q Consensus 244 ~WNLnnLp~l~gSLL~~~~~~I~GVttP~LYiGM~fStf~WH~ED~~LySINYlH~Gap 302 (1048)
.||++++|. .+++|++++.+++|+++||+|+||++|+|+||+|++++ +||+|.|+.
T Consensus 2 ~~~l~~lP~-~~~ll~~~~~~~~~~~~~~~~~G~~~s~t~~H~d~~~~--~n~~~~~~~ 57 (57)
T smart00558 2 LNNLAKLPF-KLNLLSDLPEDILGPDVPYLYMGMAGSVTPWHIDDYDL--VNYLHQGAG 57 (57)
T ss_pred cchhhhCCC-cchHHHHCCcccCCCCcceEEEeCCCCccceeEcCCCe--EEEEEecCC
Confidence 799999999 88999999999999999999999999999999999999 999999863
No 12
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=98.02 E-value=2.6e-06 Score=107.88 Aligned_cols=176 Identities=20% Similarity=0.170 Sum_probs=143.7
Q ss_pred ccCCCCCCCCCCC-----C-CcccccCCCCCCcccceEEeecccccccccccCccceeeeeeeeCCceeEEEecCccHHH
Q 001595 242 MSGWNLNNLPRLP-----G-SVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHAST 315 (1048)
Q Consensus 242 ~~~WNLnnLp~l~-----g-SLL~~~~~~I~GVttP~LYiGM~fStf~WH~ED~~LySINYlH~GapK~WY~VP~~~a~k 315 (1048)
..+|...-.-.++ + ++|.+.+..+-||++..+|+...++.+.-|.|...+.++|.++..+.+.||+||.++...
T Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~~~~n~~~~~~k~~~~rt~~~~~n~~~~s~~~n~~p~~~~~~~v~~~~~~~ 683 (904)
T KOG1246|consen 604 KLPWFGRVDGALPSLGFRGANLLEHAGEKILGMNTVQCYMKVPGSRTTAHQENSALASININLGPGDCVWFAVPLEYWGV 683 (904)
T ss_pred cchhhhhhhhhhcccccCCcchHHHHHHHhhcccccceeeccccccchhHHHHHHHhhhhccCCcccceeeecccchhHH
Confidence 4567655544332 4 889999999999999999999999999999999999999999987789999999999999
Q ss_pred HHHHHHHhCchhhccCchhhhhccccc-ChhhHhhcCCCeeEeecCCCcEEEEcCCceeeeeccccceeeeecccccchh
Q 001595 316 LEKAMRKHLPDLFEEQPDLLHELVTQL-SPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWL 394 (1048)
Q Consensus 316 fE~l~k~~~p~lf~~~pd~L~h~~t~i-sP~~L~~~GIpv~r~vQ~pGEFVVTfP~aYHsgfn~GfN~aEAVNFA~~dWL 394 (1048)
+++++.+.--. ++.. ..|. .-..|...+|++++++|++|++|.++.+.|||....||..+-++|.+...--
T Consensus 684 ~~~~~~~~~~~-------~~~~-~~w~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~v~~~~~~ 755 (904)
T KOG1246|consen 684 VEDACEKHNLK-------YSDS-SVWPSSEEELLNLVIPVQKFIQKAGDLVYVGNGTVHWVQVLGFCINVSWNVSESTFA 755 (904)
T ss_pred HHHHHhhcccc-------ccch-hccchhhHHHHhccchHHHHHhccccccccCCceEEEeeecCccccceecccccchh
Confidence 99998775321 1111 2333 4567999999999999999999999999999999999999999999998854
Q ss_pred hh--HHHHHHHHHhccCCCCCcHHHHHHHHHHH
Q 001595 395 AH--GQQAVELYSEQHRKTSLSHDKLLFGSVQA 425 (1048)
Q Consensus 395 ~~--g~~a~e~y~~~~r~~~fS~d~LL~~~A~~ 425 (1048)
.. ....+.+..+......+++..+-|++|+.
T Consensus 756 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (904)
T KOG1246|consen 756 QLALALFRHDHNIESKHPSSVPMSFKVWEMAEK 788 (904)
T ss_pred hhhcchhhhhhhhhccCcccchhhhhhhhHhhc
Confidence 43 33344444455778888999999999886
No 13
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.31 E-value=0.0047 Score=65.52 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=65.4
Q ss_pred cceEEeecccccccccccCccceeeeeeeeCCceeEEEecCccHHHHHHHHHHhCchhhcc------CchhhhhcccccC
Q 001595 270 VPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEE------QPDLLHELVTQLS 343 (1048)
Q Consensus 270 tP~LYiGM~fStf~WH~ED~~LySINYlH~GapK~WY~VP~~~a~kfE~l~k~~~p~lf~~------~pd~L~h~~t~is 343 (1048)
..+|+||..+|.+.||.+. ..+++-+..| -|.|+-+||++...+ .+..... ..++. ....-..
T Consensus 132 ~~~l~ig~~gs~t~lH~D~--~~n~~~~i~G-~K~~~L~pP~~~~~l-------~~~~~~~~~~~~~~~d~~-~~d~~~~ 200 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP--SHNLLAQIRG-RKRWILFPPDDSPNL-------YPRPDSHGGTVFSWVDPD-NPDLERF 200 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S--SEEEEEEEES-EEEEEEE-GGGGGGC-------TBETTTST-TCBBSS-TT-S--TTT-
T ss_pred ccEEEEeCCCceeeeeECc--hhhhhhccCC-CEEEEEECCcccccc-------ccceecccccceeeeecc-Chhhhhh
Confidence 5579999999999999877 4466666677 599999999986533 1110000 00110 0000111
Q ss_pred hhhHhhcCCCeeEeecCCCcEEEEcCCceeeeecc---ccceeeeeccccc
Q 001595 344 PSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNC---GFNCAEAVNVAPV 391 (1048)
Q Consensus 344 P~~L~~~GIpv~r~vQ~pGEFVVTfP~aYHsgfn~---GfN~aEAVNFA~~ 391 (1048)
|. +. .++.+.++++|||.+++-++-+|.+.|. +++++-.+.|-+.
T Consensus 201 p~-~~--~~~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~ 248 (251)
T PF13621_consen 201 PK-FR--KAPPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTP 248 (251)
T ss_dssp CG-GG--G--EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS
T ss_pred hh-hc--cCceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEeccc
Confidence 22 22 2389999999999999999999999999 4677777766553
No 14
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=95.86 E-value=0.016 Score=66.08 Aligned_cols=105 Identities=22% Similarity=0.191 Sum_probs=77.3
Q ss_pred eEEeecccccccccccCccceeeeeeeeCCceeEEEecCccHHHHHHHHHHhCchhhccCchhhhhcccccChhhHhhcC
Q 001595 272 WLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEG 351 (1048)
Q Consensus 272 ~LYiGM~fStf~WH~ED~~LySINYlH~GapK~WY~VP~~~a~kfE~l~k~~~p~lf~~~pd~L~h~~t~isP~~L~~~G 351 (1048)
-.|.|-.+|+++.|.+=..-+|---+..| -|.|..+||....++.. ...+ .| .-+.-..|....
T Consensus 201 Fvy~Gp~gSwtp~HaDVf~s~swS~nicG-~KrWl~~pP~qe~~l~d----r~gn----lp-------~~~~~~~ld~~~ 264 (427)
T KOG2131|consen 201 FVYAGPAGSWTPFHADVFHSPSWSVNICG-RKRWLLYPPEQEQTLAD----RYGN----LP-------LPSWITKLDLFR 264 (427)
T ss_pred EEEeccCCCCCccchhhhcCCcceeeeec-ceeEEEeChHHhhhhhh----hccC----cC-------Cccccccccccc
Confidence 57899999999999766655555555667 68899999998554433 3221 11 111223577778
Q ss_pred CCeeEeecCCCcEEEEcCCceeeeeccccceeeeecccccc
Q 001595 352 VPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVD 392 (1048)
Q Consensus 352 Ipv~r~vQ~pGEFVVTfP~aYHsgfn~GfN~aEAVNFA~~d 392 (1048)
.|.+.+.|+|||.|++--|=||.+.|.|-.++..=|..-..
T Consensus 265 ~~~lei~Qepge~VFvPsGW~hQV~NL~dTISINHNW~N~~ 305 (427)
T KOG2131|consen 265 GPLLEIFQEPGETVFVPSGWHHQVLNLGDTISINHNWCNAT 305 (427)
T ss_pred cchhhhhccCCceeeccCccccccccccceeeecccccccc
Confidence 88899999999999999999999999999988776544433
No 15
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=93.88 E-value=0.074 Score=66.18 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=82.6
Q ss_pred eeEEEecCccHHHHHHHHHHhCchhhccCc---hhhhhcccccCh----hhHhhcCCCeeEeecCCCcEEEEcCCceeee
Q 001595 303 KIWYGVPGSHASTLEKAMRKHLPDLFEEQP---DLLHELVTQLSP----SVLKAEGVPVYHVVQHSGEFVLTFPRAYHSG 375 (1048)
Q Consensus 303 K~WY~VP~~~a~kfE~l~k~~~p~lf~~~p---d~L~h~~t~isP----~~L~~~GIpv~r~vQ~pGEFVVTfP~aYHsg 375 (1048)
-.|=+....+++|++++++++-.+.-..-+ +=+|...+.+.- ....+.||.-..++|..||.||+-.||-|.+
T Consensus 740 ALWhIF~~~Dv~KireyL~k~~~E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQV 819 (889)
T KOG1356|consen 740 ALWHIFRAQDVPKIREYLRKVCKEQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQV 819 (889)
T ss_pred chhhhhhhcchHHHHHHHHHhhHHhcCCCCcccCCCcccceeccHHHHHHHHHHhCCCccchhhcccceEEecCCCcHHh
Confidence 479999999999999999998755322111 112333344443 2445679999999999999999999999999
Q ss_pred eccccceeeeecccccchhhhHHHHHHHHHhccCCCCCcHH
Q 001595 376 FNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHD 416 (1048)
Q Consensus 376 fn~GfN~aEAVNFA~~dWL~~g~~a~e~y~~~~r~~~fS~d 416 (1048)
.|.--++..|+.|..|.-+.....-.+-||.+- ...+.|+
T Consensus 820 rNLkSCikVa~DFVSPE~v~ec~rLT~EfR~Lp-~~h~~~e 859 (889)
T KOG1356|consen 820 RNLKSCIKVAEDFVSPEHVSECFRLTQEFRQLP-QNHKNHE 859 (889)
T ss_pred hhhhhHHHHHHhhCChhhHHHHHHHHHHHhhCC-CcccchH
Confidence 999999999999999998876544444444321 1255664
No 16
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=92.35 E-value=0.082 Score=59.61 Aligned_cols=131 Identities=21% Similarity=0.229 Sum_probs=88.4
Q ss_pred CCcccccCCCCCCcccceEEeecccccccccccCccceeeeeeeeCCceeEEEecCccHHHHHHHHHHhCchhhccCchh
Q 001595 255 GSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDL 334 (1048)
Q Consensus 255 gSLL~~~~~~I~GVttP~LYiGM~fStf~WH~ED~~LySINYlH~GapK~WY~VP~~~a~kfE~l~k~~~p~lf~~~pd~ 334 (1048)
..|+.+++.. .-=---|+-+|-..|-+.||++...+-.-|-+..| -|.|.-+|+.--..+-+.. ++.-.+||+-
T Consensus 166 dDlF~y~g~e-~RPpyRWfvmGParSGtsiHIDPlgTSAWNtll~G-hKrW~LfPp~~p~~lvkv~----~~e~g~~~de 239 (407)
T KOG2130|consen 166 DDLFQYLGEE-RRPPYRWFVMGPARSGTSIHIDPLGTSAWNTLLQG-HKRWVLFPPGTPPELVKVT----VDEGGKQPDE 239 (407)
T ss_pred HHHHHhcCcc-cCCCceeEEecCCCCCceeEECCcchHHHHHHhhc-cceeEEcCCCCCCCceeec----ccccCCCCcc
Confidence 4566665532 00113499999999999999999999999999988 6889999987533222211 1222234431
Q ss_pred hhhcccccCh---h----hHhhcCCCeeEeecCCCcEEEEcCCceeeeeccccceeeeecccccchhh
Q 001595 335 LHELVTQLSP---S----VLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLA 395 (1048)
Q Consensus 335 L~h~~t~isP---~----~L~~~GIpv~r~vQ~pGEFVVTfP~aYHsgfn~GfN~aEAVNFA~~dWL~ 395 (1048)
. .||++- . .+-.+- .-..++|.|||-|++--|=+|.++|.-..+|..-|||...=++
T Consensus 240 ~---itwf~~~y~rt~~Pswp~E~-kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~ 303 (407)
T KOG2130|consen 240 I---ITWFSTIYPRTQLPSWPDEY-KPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFP 303 (407)
T ss_pred e---echhhhccccccCCCCcccc-CCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCc
Confidence 1 111111 0 011122 2346899999999999999999999999999999999877554
No 17
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=85.17 E-value=3.2 Score=47.47 Aligned_cols=104 Identities=19% Similarity=0.202 Sum_probs=67.1
Q ss_pred ccceEEeeccc-ccccccccCccceeeeeeeeCCceeEEEecCccHHHHHHHHHHhCchhhccCchhhhhcccccChhhH
Q 001595 269 LVPWLYVGMCF-SSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVL 347 (1048)
Q Consensus 269 ttP~LYiGM~f-Stf~WH~ED~~LySINYlH~GapK~WY~VP~~~a~kfE~l~k~~~p~lf~~~pd~L~h~~t~isP~~L 347 (1048)
..-.+|++-.+ ..|.+|.++++..-| -.-+.|.|..-++.. +. ..+..+ .+-..
T Consensus 114 ~~~n~Y~tp~g~~g~~~H~D~~dvfvl---Q~~G~K~W~l~~~~~------------~~-----~~~~~~-----~~~~~ 168 (319)
T PF08007_consen 114 VGANAYLTPPGSQGFGPHYDDHDVFVL---QLEGRKRWRLYPPPD------------EP-----APLYSD-----QPFKQ 168 (319)
T ss_dssp EEEEEEEETSSBEESECEE-SSEEEEE---EEES-EEEEEE-SCC------------CT-----TTSSCE-------TTT
T ss_pred cceEEEecCCCCCCccCEECCcccEEE---ECCceeEEEECCCCc------------cc-----ccccCC-----CCccc
Confidence 45578999888 589999999876654 355689999987211 00 000000 01111
Q ss_pred hhcCCCeeEeecCCCcEEEEcCCceeeeeccccceeeeecccccchhhhH
Q 001595 348 KAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHG 397 (1048)
Q Consensus 348 ~~~GIpv~r~vQ~pGEFVVTfP~aYHsgfn~GfN~aEAVNFA~~dWL~~g 397 (1048)
.+..-|+..++=+||+.+..-+|.+|.+.+.|.+++-+++|-++.|..+-
T Consensus 169 ~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~t~~dl~ 218 (319)
T PF08007_consen 169 LEEFEPVEEVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAPTWADLL 218 (319)
T ss_dssp CG--STSEEEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCEBHHHHH
T ss_pred cccCceeEEEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCCchhhHH
Confidence 23336788999999999999999999999999999999999999998753
No 18
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=45.53 E-value=11 Score=30.60 Aligned_cols=33 Identities=24% Similarity=0.587 Sum_probs=25.7
Q ss_pred cccccccccccccccc-ccCCccccccchh-hhcCCC
Q 001595 495 CFSCFYDLHLSAAGCK-CSPDRFACLKHAN-IFCSCE 529 (1048)
Q Consensus 495 C~~Ck~~~fLS~V~C~-C~~~~~~CL~Ha~-~lCsC~ 529 (1048)
|.+|+...+|..+.|. |. .++|+.|-. +..+|+
T Consensus 1 C~~C~~~~~l~~f~C~~C~--~~FC~~HR~~e~H~C~ 35 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCG--NLFCGEHRLPEDHDCP 35 (39)
T ss_pred CcccCCcccccCeECCccC--CccccccCCccccCCc
Confidence 7889999999888899 85 689999953 234454
No 19
>COG2461 Uncharacterized conserved protein [Function unknown]
Probab=30.83 E-value=30 Score=41.04 Aligned_cols=43 Identities=26% Similarity=0.641 Sum_probs=34.8
Q ss_pred CCCCccCCCHHhhhCHHHHHHHHHHhhhhcCceEEcCCCCCCCCC
Q 001595 30 DEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPC 74 (1048)
Q Consensus 30 ~eaPVF~PT~EEF~Dpl~YI~~I~~~AekyGIcKIVPP~~WkPpc 74 (1048)
.+.-+||||.-+--++-.| ..|+.+-..+|-|||+|| .|+|.-
T Consensus 198 kEe~Ilypt~~d~~te~ew-~~i~~~~~eigy~~i~p~-~w~p~~ 240 (409)
T COG2461 198 KEENILYPTLLDLLTEGEW-EAIKEQSKEIGYAKIKPP-KWKPKK 240 (409)
T ss_pred hhhhhHHhHHHHhcCHHHH-HHHHhcCcccceEEecCc-cccCcc
Confidence 4667899998777665554 458889999999999999 999963
No 20
>KOG4611 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.19 E-value=46 Score=38.87 Aligned_cols=27 Identities=33% Similarity=0.663 Sum_probs=21.6
Q ss_pred CCccccccchhhhcCCCCCceEEEEEcC
Q 001595 513 PDRFACLKHANIFCSCEIDHRFVILRYS 540 (1048)
Q Consensus 513 ~~~~~CL~Ha~~lCsC~~~~~~llyRYt 540 (1048)
|+...||+|-...|-|+.+ .+|.+|-.
T Consensus 63 pdqtgclncnngtchcpsq-stlifrda 89 (747)
T KOG4611|consen 63 PDQTGCLNCNNGTCHCPSQ-STLIFRDA 89 (747)
T ss_pred CccCCceecCCCccCCCCc-ceEEEEcC
Confidence 5678899999889999876 47888844
Done!