Query 001596
Match_columns 1048
No_of_seqs 260 out of 496
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 04:44:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001596.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001596hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2038 CAATT-binding transcri 100.0 2E-209 5E-214 1780.9 59.2 798 1-867 1-817 (988)
2 COG5593 Nucleic-acid-binding p 100.0 2E-141 3E-146 1181.4 40.4 628 186-923 57-705 (821)
3 PF03914 CBF: CBF/Mak21 family 100.0 4.2E-37 9.2E-42 312.7 14.4 162 538-781 1-164 (164)
4 KOG2154 Predicted nucleolar pr 100.0 6.7E-28 1.5E-32 270.4 32.6 225 490-814 249-476 (505)
5 KOG2153 Protein involved in th 100.0 5.8E-27 1.3E-31 270.9 32.7 438 228-812 190-685 (704)
6 COG5117 NOC3 Protein involved 99.9 1E-24 2.2E-29 243.2 28.2 432 227-786 135-654 (657)
7 PF07540 NOC3p: Nucleolar comp 98.7 4.2E-08 9.1E-13 92.5 7.5 92 228-324 4-95 (95)
8 PTZ00429 beta-adaptin; Provisi 98.0 0.0064 1.4E-07 76.3 32.7 246 319-612 136-398 (746)
9 KOG2038 CAATT-binding transcri 97.5 0.00011 2.3E-09 89.0 5.3 72 323-394 341-414 (988)
10 PF01602 Adaptin_N: Adaptin N 97.1 0.038 8.3E-07 65.7 21.1 193 320-565 111-311 (526)
11 KOG1832 HIV-1 Vpr-binding prot 96.8 0.00057 1.2E-08 83.6 2.6 8 852-859 1335-1342(1516)
12 PTZ00429 beta-adaptin; Provisi 96.4 1.2 2.6E-05 56.5 27.7 120 306-429 85-209 (746)
13 KOG2153 Protein involved in th 96.4 0.0082 1.8E-07 72.4 8.2 97 594-785 604-700 (704)
14 PF04147 Nop14: Nop14-like fam 95.9 0.013 2.8E-07 74.7 6.9 22 1008-1029 416-442 (840)
15 PF10446 DUF2457: Protein of u 95.8 0.0046 1E-07 71.9 2.3 11 983-993 111-121 (458)
16 PF10508 Proteasom_PSMB: Prote 95.8 4.7 0.0001 49.0 27.7 100 321-420 75-183 (503)
17 KOG1059 Vesicle coat complex A 94.7 0.46 1E-05 58.7 14.3 68 328-395 149-216 (877)
18 PF12717 Cnd1: non-SMC mitotic 93.9 0.93 2E-05 47.3 12.9 122 323-449 25-155 (178)
19 PF01602 Adaptin_N: Adaptin N 93.5 4.1 8.9E-05 48.6 19.2 117 306-426 59-179 (526)
20 PF04931 DNA_pol_phi: DNA poly 93.5 0.08 1.7E-06 67.3 5.1 37 321-358 93-129 (784)
21 KOG3064 RNA-binding nuclear pr 93.2 0.061 1.3E-06 58.9 2.8 26 760-785 74-99 (303)
22 PF04931 DNA_pol_phi: DNA poly 93.1 0.068 1.5E-06 67.9 3.6 14 801-814 559-572 (784)
23 KOG1058 Vesicle coat complex C 92.8 27 0.00059 44.2 24.3 123 492-640 310-435 (948)
24 KOG1062 Vesicle coat complex A 92.3 9.9 0.00022 48.1 20.0 245 328-633 147-417 (866)
25 PF05918 API5: Apoptosis inhib 91.6 3.8 8.3E-05 50.4 15.5 35 325-359 61-95 (556)
26 PF08569 Mo25: Mo25-like; Int 90.3 5.8 0.00013 46.0 14.8 192 188-432 116-315 (335)
27 PLN03200 cellulose synthase-in 89.5 33 0.00071 48.4 22.8 199 228-430 334-561 (2102)
28 PF14632 SPT6_acidic: Acidic N 87.7 0.44 9.6E-06 45.3 2.8 34 1009-1043 55-88 (92)
29 KOG1824 TATA-binding protein-i 87.6 17 0.00037 47.0 16.9 276 311-633 560-851 (1233)
30 cd00256 VATPase_H VATPase_H, r 87.5 44 0.00094 40.3 19.7 107 319-431 101-219 (429)
31 PF04147 Nop14: Nop14-like fam 87.2 0.55 1.2E-05 60.4 4.2 20 539-558 53-72 (840)
32 PF10508 Proteasom_PSMB: Prote 86.8 86 0.0019 38.4 22.7 122 325-453 162-296 (503)
33 cd00020 ARM Armadillo/beta-cat 86.6 3.8 8.2E-05 38.1 8.6 101 324-426 8-118 (120)
34 PF10363 DUF2435: Protein of u 86.4 3.2 6.9E-05 39.5 7.8 62 332-393 12-76 (92)
35 KOG2171 Karyopherin (importin) 85.8 86 0.0019 41.6 22.1 253 318-636 343-622 (1075)
36 PF14500 MMS19_N: Dos2-interac 85.7 35 0.00076 38.3 16.9 101 325-428 1-111 (262)
37 PF06524 NOA36: NOA36 protein; 83.5 1.2 2.5E-05 49.4 4.0 20 794-813 178-201 (314)
38 COG5231 VMA13 Vacuolar H+-ATPa 83.4 73 0.0016 37.1 17.8 172 413-640 207-396 (432)
39 KOG1248 Uncharacterized conser 83.3 1.8E+02 0.0039 39.0 24.9 96 186-283 556-668 (1176)
40 KOG0413 Uncharacterized conser 82.4 19 0.00042 46.5 14.0 192 323-548 616-828 (1529)
41 KOG0526 Nucleosome-binding fac 81.8 0.95 2.1E-05 54.4 2.7 18 490-507 129-146 (615)
42 COG5098 Chromosome condensatio 81.7 3.4 7.5E-05 51.2 7.2 78 317-394 340-420 (1128)
43 PF12717 Cnd1: non-SMC mitotic 81.6 13 0.00028 38.9 10.7 108 337-448 2-110 (178)
44 PF05327 RRN3: RNA polymerase 79.5 10 0.00022 46.9 10.5 118 266-421 305-425 (563)
45 PF12348 CLASP_N: CLASP N term 78.4 57 0.0012 34.8 14.7 75 318-392 89-163 (228)
46 PF09073 BUD22: BUD22; InterP 77.4 2.9 6.4E-05 49.9 5.0 11 853-863 138-148 (432)
47 PF06524 NOA36: NOA36 protein; 75.7 3.9 8.4E-05 45.5 4.8 8 906-913 250-257 (314)
48 PF13251 DUF4042: Domain of un 75.6 58 0.0013 34.9 13.4 134 357-553 40-176 (182)
49 KOG0414 Chromosome condensatio 74.7 11 0.00024 49.5 9.1 83 314-396 350-435 (1251)
50 KOG1059 Vesicle coat complex A 74.5 2.3E+02 0.0051 36.4 19.6 126 322-454 298-423 (877)
51 PF12830 Nipped-B_C: Sister ch 72.5 9.2 0.0002 40.5 6.7 72 322-396 7-81 (187)
52 cd03561 VHS VHS domain family; 72.3 26 0.00056 35.1 9.5 98 327-424 4-108 (133)
53 PF03224 V-ATPase_H_N: V-ATPas 71.4 9 0.0002 43.5 6.7 116 320-445 106-239 (312)
54 KOG2051 Nonsense-mediated mRNA 69.1 2.6E+02 0.0056 37.3 18.9 65 339-403 521-588 (1128)
55 KOG0915 Uncharacterized conser 68.1 4.8E+02 0.01 36.3 26.8 219 319-566 1035-1284(1702)
56 cd00020 ARM Armadillo/beta-cat 66.6 15 0.00034 33.9 6.2 66 323-388 49-119 (120)
57 PF12348 CLASP_N: CLASP N term 66.4 53 0.0012 35.0 11.0 107 323-431 53-163 (228)
58 PF01603 B56: Protein phosphat 65.4 3E+02 0.0065 33.0 18.0 79 543-625 239-321 (409)
59 PF08167 RIX1: rRNA processing 64.4 71 0.0015 33.2 11.1 136 499-635 3-148 (165)
60 PF14664 RICTOR_N: Rapamycin-i 64.2 76 0.0017 37.5 12.5 78 318-396 103-182 (371)
61 COG5096 Vesicle coat complex, 64.1 4.3E+02 0.0094 34.4 24.4 139 232-390 53-196 (757)
62 KOG2393 Transcription initiati 63.5 6 0.00013 47.9 3.3 22 872-893 272-293 (555)
63 KOG3064 RNA-binding nuclear pr 62.5 3.1 6.7E-05 46.1 0.7 12 995-1006 262-273 (303)
64 PF00790 VHS: VHS domain; Int 61.2 33 0.00073 34.6 7.8 103 324-426 6-116 (140)
65 KOG2154 Predicted nucleolar pr 61.0 59 0.0013 39.3 10.6 136 217-361 242-393 (505)
66 PF05764 YL1: YL1 nuclear prot 60.9 8.1 0.00017 42.8 3.6 7 905-911 25-31 (240)
67 KOG1241 Karyopherin (importin) 60.6 4.9E+02 0.011 33.8 22.3 133 314-450 397-549 (859)
68 PF04826 Arm_2: Armadillo-like 60.4 63 0.0014 36.2 10.5 115 331-454 23-144 (254)
69 KOG1077 Vesicle coat complex A 59.6 5E+02 0.011 33.6 18.4 245 332-616 157-419 (938)
70 KOG0943 Predicted ubiquitin-pr 59.1 9.1 0.0002 50.0 3.9 35 343-377 804-838 (3015)
71 PF14663 RasGEF_N_2: Rapamycin 58.9 11 0.00023 37.2 3.7 38 354-391 2-39 (115)
72 KOG0526 Nucleosome-binding fac 58.3 9.2 0.0002 46.4 3.6 10 856-865 419-428 (615)
73 PF05285 SDA1: SDA1; InterPro 57.1 7.3 0.00016 45.0 2.5 25 761-785 5-29 (324)
74 PF02724 CDC45: CDC45-like pro 55.5 9.1 0.0002 48.0 3.2 14 785-798 24-37 (622)
75 COG5406 Nucleosome binding fac 55.5 8 0.00017 47.6 2.5 13 417-429 396-408 (1001)
76 PF02724 CDC45: CDC45-like pro 55.2 6.4 0.00014 49.3 1.8 16 616-632 11-26 (622)
77 PF13513 HEAT_EZ: HEAT-like re 54.8 16 0.00035 30.4 3.6 51 337-387 1-55 (55)
78 KOG1061 Vesicle coat complex A 54.5 1.5E+02 0.0032 38.1 13.0 76 322-397 120-197 (734)
79 KOG1248 Uncharacterized conser 53.3 5.6E+02 0.012 34.8 18.1 218 336-610 667-900 (1176)
80 PF04388 Hamartin: Hamartin pr 53.2 5.6E+02 0.012 32.9 18.2 137 339-530 20-156 (668)
81 KOG2141 Protein involved in hi 53.2 7.8 0.00017 48.5 2.0 20 595-614 14-34 (822)
82 PF05285 SDA1: SDA1; InterPro 53.1 8.1 0.00018 44.6 2.0 13 1009-1021 227-239 (324)
83 KOG1992 Nuclear export recepto 53.1 6.6E+02 0.014 33.0 25.4 249 183-453 255-558 (960)
84 PF08167 RIX1: rRNA processing 52.8 1E+02 0.0022 32.1 9.9 88 316-405 60-159 (165)
85 cd03569 VHS_Hrs_Vps27p VHS dom 52.6 55 0.0012 33.5 7.7 68 324-391 5-72 (142)
86 KOG0212 Uncharacterized conser 52.6 5.8E+02 0.013 32.2 19.6 72 322-393 207-283 (675)
87 KOG0943 Predicted ubiquitin-pr 52.6 11 0.00025 49.2 3.2 17 794-810 1472-1488(3015)
88 KOG1078 Vesicle coat complex C 52.1 3.2E+02 0.0069 35.5 15.2 195 323-550 282-494 (865)
89 KOG0946 ER-Golgi vesicle-tethe 51.6 6.9E+02 0.015 32.8 19.1 94 306-401 107-207 (970)
90 KOG2160 Armadillo/beta-catenin 50.6 2E+02 0.0042 33.9 12.5 99 331-432 132-244 (342)
91 PF04006 Mpp10: Mpp10 protein; 49.1 19 0.00041 45.0 4.5 26 1000-1025 175-201 (600)
92 KOG0262 RNA polymerase I, larg 47.0 21 0.00044 47.3 4.3 40 14-55 185-225 (1640)
93 PF11705 RNA_pol_3_Rpc31: DNA- 46.7 18 0.00038 39.8 3.3 14 798-811 90-103 (233)
94 cd03567 VHS_GGA VHS domain fam 46.5 77 0.0017 32.5 7.6 74 326-399 4-78 (139)
95 KOG1060 Vesicle coat complex A 46.4 8.2E+02 0.018 32.1 19.4 60 325-384 145-204 (968)
96 smart00288 VHS Domain present 45.9 80 0.0017 31.8 7.6 65 327-391 4-68 (133)
97 PF05004 IFRD: Interferon-rela 45.8 5.3E+02 0.011 29.8 24.9 62 492-553 198-262 (309)
98 PF12755 Vac14_Fab1_bd: Vacuol 44.3 1E+02 0.0022 29.6 7.7 72 317-389 21-96 (97)
99 cd03568 VHS_STAM VHS domain fa 44.3 83 0.0018 32.3 7.5 98 327-425 4-107 (144)
100 PF03115 Astro_capsid: Astrovi 43.8 7.7 0.00017 49.6 0.0 9 961-969 691-699 (787)
101 cd03568 VHS_STAM VHS domain fa 43.7 87 0.0019 32.2 7.6 41 529-570 45-91 (144)
102 PF12612 TFCD_C: Tubulin foldi 43.6 1.5E+02 0.0033 31.5 9.7 32 320-351 4-35 (193)
103 COG5271 MDN1 AAA ATPase contai 43.4 17 0.00037 49.9 2.9 22 212-233 3170-3191(4600)
104 COG5240 SEC21 Vesicle coat com 42.4 3.8E+02 0.0083 33.8 13.5 175 241-448 202-383 (898)
105 KOG1999 RNA polymerase II tran 42.3 16 0.00034 47.3 2.3 6 1017-1022 127-132 (1024)
106 PF14812 PBP1_TM: Transmembran 42.1 9.4 0.0002 35.8 0.3 7 991-997 50-56 (81)
107 KOG0127 Nucleolar protein fibr 41.9 17 0.00036 44.4 2.4 6 1009-1014 299-304 (678)
108 KOG2051 Nonsense-mediated mRNA 41.9 6.5 0.00014 50.9 -1.0 20 435-454 493-512 (1128)
109 KOG2956 CLIP-associating prote 40.9 5.2E+02 0.011 31.9 14.1 109 320-450 326-435 (516)
110 PF14666 RICTOR_M: Rapamycin-i 40.5 1.2E+02 0.0026 33.6 8.5 80 306-390 128-207 (226)
111 PF15574 Imm28: Immunity prote 39.9 91 0.002 31.5 6.7 86 319-406 7-101 (123)
112 PF12719 Cnd3: Nuclear condens 39.2 3.7E+02 0.008 30.4 12.5 129 318-454 63-207 (298)
113 COG1384 LysS Lysyl-tRNA synthe 38.5 53 0.0011 40.3 5.8 58 537-610 463-520 (521)
114 PF11705 RNA_pol_3_Rpc31: DNA- 38.2 28 0.0006 38.3 3.2 13 751-763 43-55 (233)
115 PF02985 HEAT: HEAT repeat; I 38.0 57 0.0012 24.5 3.9 28 325-352 2-29 (31)
116 cd03572 ENTH_epsin_related ENT 37.1 2E+02 0.0043 29.0 8.7 32 323-354 38-69 (122)
117 PF11698 V-ATPase_H_C: V-ATPas 36.7 29 0.00062 34.8 2.7 73 355-429 38-116 (119)
118 cd00197 VHS_ENTH_ANTH VHS, ENT 34.8 53 0.0011 31.7 4.2 66 326-391 3-68 (115)
119 cd08050 TAF6 TATA Binding Prot 34.5 3.4E+02 0.0074 31.7 11.4 48 379-426 287-338 (343)
120 PF10350 DUF2428: Putative dea 33.0 6.6E+02 0.014 28.0 13.0 117 514-630 92-226 (255)
121 PF13646 HEAT_2: HEAT repeats; 32.9 44 0.00095 29.8 3.1 56 326-387 2-58 (88)
122 KOG2076 RNA polymerase III tra 32.0 40 0.00086 43.5 3.5 6 904-909 10-15 (895)
123 KOG1991 Nuclear transport rece 31.9 22 0.00048 46.1 1.4 17 411-427 316-332 (1010)
124 KOG2393 Transcription initiati 31.4 54 0.0012 40.2 4.3 9 1009-1017 376-384 (555)
125 KOG0262 RNA polymerase I, larg 31.0 46 0.00099 44.4 3.8 21 792-814 1164-1184(1640)
126 PF01603 B56: Protein phosphat 30.8 6.5E+02 0.014 30.1 13.2 22 493-514 249-270 (409)
127 KOG1078 Vesicle coat complex C 29.1 9.2E+02 0.02 31.6 14.2 56 240-295 31-91 (865)
128 KOG1189 Global transcriptional 28.9 47 0.001 42.2 3.3 11 418-429 356-366 (960)
129 cd07064 AlkD_like_1 A new stru 28.8 2.7E+02 0.0057 30.2 8.7 72 320-393 112-183 (208)
130 PF09073 BUD22: BUD22; InterP 28.7 67 0.0014 38.7 4.6 12 619-630 59-70 (432)
131 COG5406 Nucleosome binding fac 28.6 32 0.00069 42.7 1.8 11 224-234 208-218 (1001)
132 PF00790 VHS: VHS domain; Int 28.5 1.3E+02 0.0028 30.4 6.0 23 529-552 50-72 (140)
133 KOG2652 RNA polymerase II tran 28.2 47 0.001 38.6 3.0 11 772-782 124-134 (348)
134 KOG1991 Nuclear transport rece 28.2 27 0.00059 45.3 1.3 28 306-333 285-312 (1010)
135 PHA02664 hypothetical protein; 28.1 53 0.0011 37.8 3.3 11 502-512 76-86 (534)
136 cd07609 BAR_SIP3_fungi The Bin 28.0 2.9E+02 0.0062 30.4 8.8 91 248-350 15-108 (214)
137 KOG1189 Global transcriptional 26.3 45 0.00097 42.4 2.5 72 317-401 236-308 (960)
138 KOG0929 Guanine nucleotide exc 26.3 2E+03 0.044 30.8 18.0 37 320-356 1171-1207(1514)
139 PF00620 RhoGAP: RhoGAP domain 25.8 1.1E+02 0.0025 30.2 5.0 66 216-283 78-145 (151)
140 PF05004 IFRD: Interferon-rela 25.5 1.1E+03 0.023 27.3 15.5 98 321-454 42-139 (309)
141 PF05477 SURF2: Surfeit locus 25.1 1.2E+02 0.0026 34.0 5.4 11 625-635 8-18 (244)
142 KOG2020 Nuclear transport rece 25.1 2.8E+02 0.0061 37.3 9.4 107 493-610 203-311 (1041)
143 cd03569 VHS_Hrs_Vps27p VHS dom 25.0 2.3E+02 0.005 29.0 7.0 42 528-571 48-95 (142)
144 PF02671 PAH: Paired amphipath 24.9 1.1E+02 0.0025 25.0 4.0 36 319-356 2-37 (47)
145 PF08568 Kinetochor_Ybp2: Unch 24.9 2.1E+02 0.0045 36.1 8.1 68 319-406 437-506 (633)
146 PF05503 Pox_G7: Poxvirus G7-l 24.3 92 0.002 36.3 4.4 41 496-539 70-111 (363)
147 KOG1597 Transcription initiati 24.2 4.5E+02 0.0098 30.5 9.6 109 519-633 123-261 (308)
148 PRK09687 putative lyase; Provi 24.2 5.2E+02 0.011 29.3 10.4 94 325-426 92-186 (280)
149 PF14726 RTTN_N: Rotatin, an a 24.0 2.2E+02 0.0047 27.7 6.2 59 338-397 2-66 (98)
150 PF08713 DNA_alkylation: DNA a 23.7 1.3E+02 0.0028 31.8 5.2 83 308-393 106-188 (213)
151 PHA03080 putative virion core 23.3 99 0.0021 36.2 4.4 40 497-539 72-112 (366)
152 PF14750 INTS2: Integrator com 23.0 1.6E+03 0.034 30.6 15.6 118 317-450 869-1000(1049)
153 KOG0151 Predicted splicing reg 23.0 5.1E+02 0.011 33.3 10.4 87 516-614 464-552 (877)
154 PLN03076 ARF guanine nucleotid 22.9 2.5E+03 0.054 30.6 24.6 69 323-391 1182-1255(1780)
155 KOG1410 Nuclear transport rece 22.6 2E+02 0.0044 36.6 6.9 274 334-636 50-390 (1082)
156 PF14228 MOR2-PAG1_mid: Cell m 22.4 1.4E+03 0.031 31.3 15.0 55 337-391 517-574 (1120)
157 KOG0413 Uncharacterized conser 21.9 9E+02 0.02 32.6 12.3 74 324-397 1007-1082(1529)
158 KOG3130 Uncharacterized conser 21.7 85 0.0018 37.3 3.5 21 587-607 22-44 (514)
159 KOG1062 Vesicle coat complex A 21.1 2E+03 0.043 28.8 17.1 43 364-408 111-153 (866)
160 KOG2199 Signal transducing ada 21.1 2.8E+02 0.0061 33.3 7.4 78 532-609 55-139 (462)
161 KOG3130 Uncharacterized conser 21.0 55 0.0012 38.8 1.8 14 800-813 105-118 (514)
162 KOG4820 Involved in anesthetic 20.8 1.2E+02 0.0025 37.4 4.5 94 361-454 30-138 (933)
163 PF06685 DUF1186: Protein of u 20.4 7.3E+02 0.016 28.0 10.3 135 493-633 29-183 (249)
164 PF14500 MMS19_N: Dos2-interac 20.4 7.9E+02 0.017 27.8 10.7 131 494-633 20-156 (262)
165 PF03344 Daxx: Daxx Family; I 20.3 34 0.00074 43.7 0.0 23 385-407 118-140 (713)
166 PTZ00415 transmission-blocking 20.3 66 0.0014 44.4 2.4 10 1035-1044 327-336 (2849)
167 KOG1293 Proteins containing ar 20.2 3.9E+02 0.0084 34.0 8.7 108 317-427 453-581 (678)
168 PF02985 HEAT: HEAT repeat; I 20.0 87 0.0019 23.5 2.1 29 361-389 1-29 (31)
No 1
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=100.00 E-value=2.1e-209 Score=1780.95 Aligned_cols=798 Identities=42% Similarity=0.623 Sum_probs=631.8
Q ss_pred CCCCCCCCCCChhhHHHHHhHHHHHhhhhcccccccCCCCCCCcccccCCCCCCCCcCCCCccCCCCCCCCCCCCCcccc
Q 001596 1 MSDSKPSKTKNKEDVELLKSDIASFASSLGLSSASAASSGFNDSDFRKTGPIKPQKKFSKNNEKGGAQQEPSNTQKPNIA 80 (1048)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1048)
|++.+|.. ...-++-+++||+++|||+.||.++ +++.||||.+||+....+.++.+..+.+++ -+++.. .+|.
T Consensus 1 ea~~~~~s-ee~l~L~~~~sD~~~~as~~e~~~v-~d~kGf~ddlq~~~~k~~~q~~kl~k~dk~-~~~ee~--e~~~-- 73 (988)
T KOG2038|consen 1 EAKIKPLS-EESLDLSLLTSDIASFASSIELASV-LDSKGFNDDLQRKPMKLKKQPMKLAKKDKP-KQPEEK--EGKA-- 73 (988)
T ss_pred CCcccccc-HHHHHHhccchhHHHhhhhhhhhhh-cccccccchhhhhhhhhccccccccccCcc-cCchhh--ccch--
Confidence 56777776 5566777899999999999999998 788999999999988777765555444442 111111 1111
Q ss_pred ccccCCCCCCCCcccCCCCCCCCCCcchhhhHhHHHhhhcCCCCCCCCCccc-cCCC--CC----ccccCCCCCCccccc
Q 001596 81 KFNKTNKKPKPDKKFVKPQKHNDNDKTHFEQELREEMEKSNSKPVPKAPVLT-LESG--AN----HDKYKKMPKLPLVKA 153 (1048)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~----~~~~~~~~~~~~~~~ 153 (1048)
+.+ +.+++ + -..+.+....+.+..+...|++.|...+ ..+. ++ +.....++.++....
T Consensus 74 qen----~~~e~---~--------k~~k~~~~n~d~~~~qt~n~~~~~n~~s~~~~es~~~~~~~~ee~q~~~~~~~~~i 138 (988)
T KOG2038|consen 74 QEN----KLKED---L--------KIAKKIMANFDSGAVQTNNKKQAANLASKPVDESPGNKKKSNEEKQGKKILGQDGI 138 (988)
T ss_pred hhh----hhhhh---h--------ccHhHHhhccccchhhhcccccccCCCCCCCcccCCCccchhhhhcCcccccccee
Confidence 000 00000 0 0011122223333333333444333333 1111 11 344445555554433
Q ss_pred ----CCCccccccchhhhhhhcCCccccCcccc-ccHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCchHHHHHHHHhhch
Q 001596 154 ----GNLGVWYVDAKELEDKVLGGEEKSNSKRV-VDLKYVERKRELGERLLWQYVSDYE-GSRGQTGDIKMLAATQRSGT 227 (1048)
Q Consensus 154 ----~~~~~Wy~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~a~~ll~~~~~~y~-~~~~~~Sd~kwl~ti~~sGT 227 (1048)
-.++.||+.....+... ..+ .....|++++++|+.||+++++.|. ....++|+.+||.+|++|||
T Consensus 139 ~~~~p~g~~wYe~~l~~~~~e---------~~k~~~~~~VeKl~e~G~~lm~qdae~f~~t~~~~gsd~k~l~siiSsGT 209 (988)
T KOG2038|consen 139 LLLHPEGTKWYEIPLDPEHDE---------DTKEMNKDVVEKLLELGKDLMAQDAELFQETKQDKGSDAKWLYSIISSGT 209 (988)
T ss_pred eeecCCCCcceeeccCcccch---------hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhcCc
Confidence 33556999876444311 111 2337899999999999999999998 45577999999999999999
Q ss_pred HHHHHHHHHHHHhhChhhhHHHHHHHHHhhhccCChhHHHHHHHHHHHHHhcCCCCCCcccccccCCCCCCCCCcccccc
Q 001596 228 AADKVSAFSVIVGDNPMANLRSLDALLGMVSSKVGKRHALTGFEALKELFVSSLLPDRKLKTLVQRPLDNLPETKDGYSL 307 (1048)
Q Consensus 228 lsDKIaAltllVQesPvhnl~~L~~Ll~m~~~K~srr~al~Al~aLkdLF~~~LLPdRKLr~f~qqPl~~l~~~k~~~~~ 307 (1048)
++|||+||+||||+|||||+++|++||+||.+| |||+|++||.+|+|||+++|||+||||+|.|||+..|+....++++
T Consensus 210 ~~DkitA~~LlvqesPvh~lk~lEtLls~c~KK-sk~~a~~~l~~LkdlfI~~LLPdRKLk~f~qrp~~~l~~~~~~~k~ 288 (988)
T KOG2038|consen 210 LTDKITAMTLLVQESPVHNLKSLETLLSSCKKK-SKRDALQALPALKDLFINGLLPDRKLKYFSQRPLLELTNKRLRDKI 288 (988)
T ss_pred chhhhHHHHHhhcccchhHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHhccCcchhhHHHhhChhhhccccccccce
Confidence 999999999999999999999999999999655 9999999999999999999999999999999999998887778899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHH
Q 001596 308 LLFWYYEEFLKQRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNL 387 (1048)
Q Consensus 308 L~lWyFEd~LK~~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~L 387 (1048)
|++|||||+||.+|++||++|+++++||++++|.+||++||.||+++||||++||++||||||||++||||+|+|+|++|
T Consensus 289 Ll~WyfE~~LK~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKlGDpqnKiaskAsylL~~L 368 (988)
T KOG2038|consen 289 LLMWYFEHELKILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNKLGDPQNKIASKASYLLEGL 368 (988)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCchHHHHHHHHHhhcCCCCCcchHHHHHHHhhhhhcccCCCchHHHHHHHHHHHHHHHHHHhhccCCCccccccc
Q 001596 388 LADHPNMKAVVINEVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLITEAGAGDKMDKNSK 467 (1048)
Q Consensus 388 L~~HP~MK~VVv~EVe~lLfRpni~~rAqYYAv~fLnQi~Ls~k~d~~~vA~~LI~iYF~lFk~lv~~~~~~~k~~Kk~K 467 (1048)
++.|||||.||+.||++|+||||++.||+||||||||||+|+|++. +||++||+|||+||+.|+.......+...++-
T Consensus 369 ~~~HPnMK~Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~--dvAnrLi~iYF~lFk~l~~~~~~d~~k~~k~~ 446 (988)
T KOG2038|consen 369 LAKHPNMKIVVIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKES--DVANRLISIYFSLFKTLVGKKDKDNRKDDKGA 446 (988)
T ss_pred HhhCCcceeehHHHHHHHHcccCccccceeehhhhhhhhHhccchH--HHHHHHHHHHHHHHHHHHHhhhhhhhhcccch
Confidence 9999999999999999999999999999999999999999999974 79999999999999999986544332222221
Q ss_pred cCCCCcCcccccccccCCCCCcccchhhHHHHHHhhHHhhccCCCCchhhhHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 001596 468 TGNKHISTFSKKSQLKISPEPHIELDSRILSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNFNVAVQALMLLD 547 (1048)
Q Consensus 468 ~~~K~~~~k~kK~~~~~~~e~~~e~~sKLLsALLtGVNRA~Py~~~d~~ddi~e~~ldtLFrI~Hs~nfntsIQAL~LLf 547 (1048)
.++|+...+.++ ++.++++..+.+|||||||||||||||||++++ ++++++||+|||+|+|++|||||||||||||
T Consensus 447 ~k~kks~k~~k~--e~~~~e~~~e~nsrllSAlLTGvNRAfPfaq~~--ddk~~~~~~tLFkl~HssNFNTsVQaLmLlf 522 (988)
T KOG2038|consen 447 AKKKKSNKKDKK--EEVSTESPIELNSRLLSALLTGVNRAFPFAQTA--DDKLEEQMKTLFKLTHSSNFNTSVQALMLLF 522 (988)
T ss_pred hhcccccccchh--hhhcccchhhhhHHHHHHHHhcccccCCcccCc--hHHHHHHhHHHHHHHhhcccchhHHHHHHHH
Confidence 122222222222 345677788999999999999999999999997 7899999999999999999999999999999
Q ss_pred HHHhcCCCChhHHHHHHHhhhcCccccCCccHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 001596 548 KISSKNHIVSDRFYRALYSKLLLPAAMNSSKAEMFIGLLHRAMKNDVNLKRVAAFSKRLLQVVLQQPPQYACGCLFLLSE 627 (1048)
Q Consensus 548 qI~s~~~~~sdRFYraLY~kLLdP~l~~SSk~~mfLnLL~ksLK~D~~~~RVaAFVKRLLQval~~pP~facg~L~LIse 627 (1048)
||+.++.++|||||||||++||||++++||+|+|||||||++||+|.+++||+||||||||||++++|+|||||||||++
T Consensus 523 Qvs~~~~~vSDRyY~aLY~kLLdP~l~~sSKq~m~LnLlykslK~D~ni~RV~AFvKRlLQVa~~q~P~~i~G~l~Llse 602 (988)
T KOG2038|consen 523 QVSKKNDYVSDRYYRALYRKLLDPRLMNSSKQAMFLNLLYKSLKEDINIQRVRAFVKRLLQVAVQQQPPFICGILFLLSE 602 (988)
T ss_pred HHHHhhhhhHHHHHHHHHHHhcCcccCchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCchhHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCccccccccCCCcccccccccccccccCCCCCCcccccchhhhhhhcccccCCCCCCCCCCCCCCCCCCcCCCCc
Q 001596 628 VLKARPPLWNMVLQNESVDEDLEHFEDVVEETDNEPSDASKTEENDVKLVKRTDDAKSDSESSEDEDIPTSDSEEDVSDQ 707 (1048)
Q Consensus 628 LLk~~P~L~~ll~~~e~~dd~~E~f~Dv~~~~d~~~~~~~k~e~~~~~~v~~~~~~~sd~~~~~~e~~~~a~~~~~e~d~ 707 (1048)
|++++|.||.|+.+.+..|++ +.|.++.+++|.+...-...+. .+..|.+ ++-.++.+++ |.
T Consensus 603 l~Karp~l~~lv~~~~~~D~e-~dv~~~~e~DD~deek~vd~Dk-e~~~vdk----~~~e~~~~e~------------ds 664 (988)
T KOG2038|consen 603 LLKARPTLRKLVVNSEDIDPE-EDVVAQMENDDVDEEKKVDLDK-EGKEVDK----NGVEEEVEEE------------DS 664 (988)
T ss_pred HHHhcchHHHHhhCCcccChh-hhhhhhhcccccchhhhccccc-cceeecc----cccccccccc------------cc
Confidence 999999999999988765543 3455554444433211000000 0111110 0000000000 10
Q ss_pred hhhhhhhccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcchhHHHHHHhhccCchHHHHHHHhhcCC
Q 001596 708 PEELFIRDNSKDLQKSKAPSHHVPQPPTSSKSSLPGGYNPRHREPSYCNADHVSWWELMVLASHVHPSVSTMAGTLLSGA 787 (1048)
Q Consensus 708 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~YDp~kRdP~yanA~~S~LWEL~~L~~HyHPSVa~fA~~LL~G~ 787 (1048)
.-++.|. .+|.. .+ .+.+....++|||++|||+||||++||||||.+|+.||||||++||++|++|.
T Consensus 665 ~s~k~E~--------~~~~~---~d--~~~~~~~~~~YD~r~R~P~f~nAd~tslWEl~~ls~HfHPSVa~~Akall~G~ 731 (988)
T KOG2038|consen 665 VSEKKED--------LDKKK---VD--PIGARGAKTPYDPRKRNPLFCNADHTSLWELLLLSKHFHPSVATFAKALLEGE 731 (988)
T ss_pred cccchhh--------hhhhh---cc--ccccccCCCCCCcccCCccccCCccchHHHHHHHhhhcCchHHHHHHHHhcCc
Confidence 0000000 01110 11 12334467899999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccCcHHHHHHHHHHhCCCCCCCCCCcc-cccccccc---cc--ccccchhHhhhccCCCCchhHHHHHHHH
Q 001596 788 NIVYNGNPLSDLTLTAFLDKFMEKKPKPTTWHGGSQ-IEPAKKLD---MN--HQLIGQEILSLAEVDVPPEDLVFHKFYM 861 (1048)
Q Consensus 788 ~I~y~GdPL~DfTL~~FLDRFvyknPK~~~~~~gs~-iqp~~~~~---~~--~~~~~~~~~~~~~~~V~~de~FFh~yf~ 861 (1048)
.|+|+|+||+|||||||||||||||||+.++++|.+ |||.++.. ++ .+|+|++|+++++++|||||+||||||+
T Consensus 732 ~i~y~g~~L~dfTL~~FLDrF~yRnPK~~t~~~Gt~imqP~~~~~~v~~s~~~pVns~e~lskk~eeIp~de~fFhry~~ 811 (988)
T KOG2038|consen 732 EIQYGGPPLNDFTLMAFLDRFAYRNPKQVTKARGTSIMQPKAKGPWVKRSDQLPVNSEEFLSKKEEEIPPDELFFHRYYS 811 (988)
T ss_pred eeecCCCchhHHHHHHHHHHHHhcCcccccccCCcccccccccCCCccccccCcccHHHHHHhhhccCChhHHHHHHHhh
Confidence 999999999999999999999999999999888865 69987652 22 3567899999999999999999999999
Q ss_pred hhhccc
Q 001596 862 NKVNTT 867 (1048)
Q Consensus 862 ~k~~~~ 867 (1048)
.+....
T Consensus 812 ~~k~~~ 817 (988)
T KOG2038|consen 812 SKKTVK 817 (988)
T ss_pred hhhhhh
Confidence 764433
No 2
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-141 Score=1181.43 Aligned_cols=628 Identities=31% Similarity=0.457 Sum_probs=527.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc-CCCchHHHHHHHHhhchHHHHHHHHHHHHhhChhhhHHHHHHHHHhhhccCChh
Q 001596 186 KYVERKRELGERLLWQYVSDYEGSR-GQTGDIKMLAATQRSGTAADKVSAFSVIVGDNPMANLRSLDALLGMVSSKVGKR 264 (1048)
Q Consensus 186 ~~v~~~~~~a~~ll~~~~~~y~~~~-~~~Sd~kwl~ti~~sGTlsDKIaAltllVQesPvhnl~~L~~Ll~m~~~K~srr 264 (1048)
.-|+++...|..|++.....|...- ..+|+.++|++++++||++|||+|||||||+||+||.++|++||++|. |++|+
T Consensus 57 e~i~~Le~rg~~ll~~d~~~~~eef~~~ts~~k~~~~lls~GT~~DrIsalTLLVq~sP~h~~k~letLls~C~-kksrn 135 (821)
T COG5593 57 EQIEKLEKRGIVLLRRDCPIQGEEFPDATSQAKIEKDLLSHGTVKDRISALTLLVQRSPSHNAKNLETLLSFCE-KKSRN 135 (821)
T ss_pred HHHHHHHHccceeecCCCchhhhhcCCchHHHHHHHHHHhcCchhhhhhhhHhhhccCcchHHHHHHHHHHHHh-ccccc
Confidence 4588899999999999888886543 467899999999999999999999999999999999999999999995 56899
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcccccccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Q 001596 265 HALTGFEALKELFVSSLLPDRKLKTLVQRPLDNLPETKDGYSLLLFWYYEEFLKQRYERFVLALEESSRDVLPVLKTKAL 344 (1048)
Q Consensus 265 ~al~Al~aLkdLF~~~LLPdRKLr~f~qqPl~~l~~~k~~~~~L~lWyFEd~LK~~Y~~Fvq~Le~ls~D~l~~~R~kal 344 (1048)
+|.++|.+|+|||+++|||+||||||.+||-.....+ +.+|+.||||++||..|+++|++||.++|||+.++|.+.+
T Consensus 136 ~a~q~l~~lKDLfi~gllp~rklry~k~q~~lsk~v~---~k~l~~~~fesflk~l~fr~levle~ls~d~i~~Vk~qvv 212 (821)
T COG5593 136 VAYQVLKNLKDLFISGLLPNRKLRYFKNQPGLSKEVQ---NKYLKQRIFESFLKNLRFRVLEVLEVLSHDPIQYVKKQVV 212 (821)
T ss_pred HHHHHHHHHHHHHhcccCcchhhHhhhcCcchhhhhc---chHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 9999999999999999999999999999995432333 3699999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCCCcchHHHHHHHhh
Q 001596 345 KIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVVINEVDSFLFRPHLGLRAKYHAVNFLS 424 (1048)
Q Consensus 345 ~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~VVv~EVe~lLfRpni~~rAqYYAv~fLn 424 (1048)
+++|+||.++||||.|||+|+||||||...||||+|+|+|++|.+.||+||.||+++|+.|.||||...|..||+++|||
T Consensus 213 ~~VydLL~a~peqe~nLl~L~INKlGDk~~kvsskasY~ilkLe~~hP~mk~VV~d~Iedf~f~pn~~~~s~yyalitLn 292 (821)
T COG5593 213 RLVYDLLEARPEQEVNLLHLFINKLGDKRDKVSSKASYVILKLELLHPGMKEVVLDGIEDFYFKPNDLFRSRYYALITLN 292 (821)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHhhccchhhhhhhhhHHHHHHHhcCCchhHHHHhhhhHheeccccccceeeeeehhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHHHhhccCCCcc-----ccccc-cCCCCcCcc-cccccccCCCCCcccchhhHH
Q 001596 425 QIRLSHKGDGPKVAKRLIDVYFALFKVLITEAGAGDKM-----DKNSK-TGNKHISTF-SKKSQLKISPEPHIELDSRIL 497 (1048)
Q Consensus 425 Qi~Ls~k~d~~~vA~~LI~iYF~lFk~lv~~~~~~~k~-----~Kk~K-~~~K~~~~k-~kK~~~~~~~e~~~e~~sKLL 497 (1048)
|++|.+++. .||++||+|||++|+.++....+.... .++.+ --+|++++. .+| -+....+...+.+|++.
T Consensus 293 qt~l~~~e~--~van~lv~vyf~~f~kfl~n~~ke~~~~s~~leek~~~~~~Knk~s~K~~k-~e~~rkev~~eknS~~~ 369 (821)
T COG5593 293 QTELENREK--AVANKLVKVYFSIFRKFLENIPKEHRVNSNILEEKLVIGLGKNKGSEKICK-TEIIRKEVHTEKNSFYG 369 (821)
T ss_pred HHHHhhhHH--HHHHHHHHHHHHHHHHHHhcCchhhcccchhHHHHHHhhhccCCCCccccc-HHHHHHHHHHhhhhHHH
Confidence 999999874 899999999999998777532221110 11111 111111111 111 01112345677899999
Q ss_pred HHHHhhHHhhccCCCCchhhhHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhcCCCChhHHHHHHHhhhcCccccCCc
Q 001596 498 SALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNFNVAVQALMLLDKISSKNHIVSDRFYRALYSKLLLPAAMNSS 577 (1048)
Q Consensus 498 sALLtGVNRA~Py~~~d~~ddi~e~~ldtLFrI~Hs~nfntsIQAL~LLfqI~s~~~~~sdRFYraLY~kLLdP~l~~SS 577 (1048)
+|+|||+|||+||+.+. ...++.|+.|||+|+|+.+|||++||||||+|..-+.-.++||||+.||.+|+||++.+||
T Consensus 370 savLtG~nRa~pfa~l~--~~~~~~Hm~tlfkith~~~fnts~qalmli~q~~~~~~l~SdryY~~lYesl~dprls~ss 447 (821)
T COG5593 370 SAVLTGCNRAGPFALLF--RNAVKSHMMTLFKITHEFLFNTSEQALMLIDQEFYRFLLDSDRYYTPLYESLIDPRLSESS 447 (821)
T ss_pred HHHHhcccccCchhhhh--HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhccchhhhhHHHHHhhhhhhccc
Confidence 99999999999999985 6799999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhCCccccccccCCCcccccccccccc
Q 001596 578 KAEMFIGLLHRAMKNDVNLKRVAAFSKRLLQVVLQQ-PPQYACGCLFLLSEVLKARPPLWNMVLQNESVDEDLEHFEDVV 656 (1048)
Q Consensus 578 k~~mfLnLL~ksLK~D~~~~RVaAFVKRLLQval~~-pP~facg~L~LIseLLk~~P~L~~ll~~~e~~dd~~E~f~Dv~ 656 (1048)
||++||||||++|+.|.++.||.||+||+||||.+| .|+|+.|..+++-+|..+-|.|++|+.+.+ +|-+.|
T Consensus 448 KqgiylnllykSL~vd~nV~rv~af~kr~lQv~S~w~~~p~~tg~f~~l~ql~~a~~~lk~l~tn~~-vd~e~e------ 520 (821)
T COG5593 448 KQGIYLNLLYKSLRVDTNVHRVDAFRKRALQVISGWMVLPFDTGDFMSLLQLEMACGDLKNLLTNTP-VDYEYE------ 520 (821)
T ss_pred ccchhHHHHHHHHHHhcCchHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHhHHHHHHhcCCC-cccccc------
Confidence 999999999999999999999999999999997665 779999999999999999999999997643 221110
Q ss_pred cccCCCCCCcccccchhhhhhhcccccCCCCCCCCCCCCCCCCCCcCCCCchhhhhhhccccccccCCCCCCCCCCCCCC
Q 001596 657 EETDNEPSDASKTEENDVKLVKRTDDAKSDSESSEDEDIPTSDSEEDVSDQPEELFIRDNSKDLQKSKAPSHHVPQPPTS 736 (1048)
Q Consensus 657 ~~~d~~~~~~~k~e~~~~~~v~~~~~~~sd~~~~~~e~~~~a~~~~~e~d~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 736 (1048)
+|. +++.+| .
T Consensus 521 ----------------------------~d~-------------~eeq~d----k------------------------- 530 (821)
T COG5593 521 ----------------------------SDA-------------EEEQGD----K------------------------- 530 (821)
T ss_pred ----------------------------cch-------------hhhhcc----c-------------------------
Confidence 000 000000 0
Q ss_pred CCCCCCCCCCCCCCCCccCCCCcchhHHHHHHhhccCchHHHHHHHhhcCCcccccCCC-CccCcHHHHHHHHHHhCCCC
Q 001596 737 SKSSLPGGYNPRHREPSYCNADHVSWWELMVLASHVHPSVSTMAGTLLSGANIVYNGNP-LSDLTLTAFLDKFMEKKPKP 815 (1048)
Q Consensus 737 ~~~~~~~~YDp~kRdP~yanA~~S~LWEL~~L~~HyHPSVa~fA~~LL~G~~I~y~GdP-L~DfTL~~FLDRFvyknPK~ 815 (1048)
.. ....||.++|||.||||+.|||||+..+.+||||+|.++|+.+..|..+. |.| |..|||.||||||||||||+
T Consensus 531 -d~-krkeydgrkrdpk~anae~s~lwei~~finhfhptv~~~a~a~v~ge~~i--~kp~l~l~tl~hfldrf~yr~~kq 606 (821)
T COG5593 531 -DI-KRKEYDGRKRDPKFANAEKSSLWEINNFINHFHPTVKTYANAYVTGEEQI--AKPDLGLFTLSHFLDRFVYRSAKQ 606 (821)
T ss_pred -ch-hhhhccCcccCcccccccccchhhhhhhhhhcccHHHHHHHHhhhhhhhh--cCCCcchhhHHHHHHHHHhcCccc
Confidence 00 12369999999999999999999999999999999999999999998664 667 99999999999999999999
Q ss_pred CCC-CCCccccccccc--------cc--cccccchhHhhhccCCCCchhHHHHHHHHhhhccccchhhhhhhcccchHhh
Q 001596 816 TTW-HGGSQIEPAKKL--------DM--NHQLIGQEILSLAEVDVPPEDLVFHKFYMNKVNTTKKPKKKKKKKGAEDEAA 884 (1048)
Q Consensus 816 ~~~-~~gs~iqp~~~~--------~~--~~~~~~~~~~~~~~~~V~~de~FFh~yf~~k~~~~~k~~k~k~k~~~dde~~ 884 (1048)
+.. +|.|+|||..++ .| ..++.++.|+.++.++|+|||.|||+||+.|.. .+|.++ +..++
T Consensus 607 t~~arg~simqpl~~g~~~~~v~~s~~~~~p~nte~~~tkk~edi~~ed~ffy~~f~~k~~-~gk~~k---~~k~~---- 678 (821)
T COG5593 607 TNTARGTSIMQPLFSGVNDSLVKASMHDQGPVNTEDWLTKKVEDIKPEDKFFYQYFTKKTA-DGKGKK---SNKAS---- 678 (821)
T ss_pred ccccccchhhhhhhccccccccccccccCCCccHHHHhhhccccCChHHHHHHHHhhhhhc-cccccc---cccCC----
Confidence 755 556888997542 11 124456789999999999999999999996633 233322 11111
Q ss_pred hhhcccCCCCcccCCCCCCChHHHHhhhhccCCCCCCCC
Q 001596 885 EELFDVDGDDYEVEGGDESDNEEIDNMLDSTDLSLVGDG 923 (1048)
Q Consensus 885 ~~~~~~d~~d~d~d~~~d~ddeE~~~~ld~~~~~~~~D~ 923 (1048)
.|++++-|++|||..|...-|+.++|.
T Consensus 679 ------------~d~d~emde~eiw~alv~srp~~e~d~ 705 (821)
T COG5593 679 ------------FDSDDEMDENEIWSALVKSRPDVEDDS 705 (821)
T ss_pred ------------cCccccccHHHHHHHHhccCCccccCc
Confidence 133456778999999988887776554
No 3
>PF03914 CBF: CBF/Mak21 family; InterPro: IPR005612 This domain is present in the CAATT-binding protein which is essential for growth and necessary for 60S ribosomal subunit biogenesis. Other proteins containing this domain stimulate transcription from the HSP70 promoter.
Probab=100.00 E-value=4.2e-37 Score=312.72 Aligned_cols=162 Identities=41% Similarity=0.661 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHhhhcCccccCCc-cHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHhcCCc
Q 001596 538 VAVQALMLLDKISSKNHIVSDRFYRALYSKLLLPAAMNSS-KAEMFIGLLHRAMKNDV-NLKRVAAFSKRLLQVVLQQPP 615 (1048)
Q Consensus 538 tsIQAL~LLfqI~s~~~~~sdRFYraLY~kLLdP~l~~SS-k~~mfLnLL~ksLK~D~-~~~RVaAFVKRLLQval~~pP 615 (1048)
++||||.+||||++++|++++|||++||+.|++|.+++++ ++.+||++|+++|+++. +..||+||||||+|+|+++||
T Consensus 1 ~~i~al~~l~~l~~~~n~d~~~FY~~LY~~L~~p~~~~~~~~~~~~l~lL~~~l~~~~~~~~rvaAFiKRLl~~sl~~~~ 80 (164)
T PF03914_consen 1 TCIQALFLLFQLLSGQNIDLDRFYRALYSLLLDPELFSSSDKSALLLNLLDKSLKSDHLPIQRVAAFIKRLLQLSLHLPP 80 (164)
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcchhhccccchHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCH
Confidence 5899999999999999999999999999988899999888 56889999999999985 999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhCCccccccccCCCcccccccccccccccCCCCCCcccccchhhhhhhcccccCCCCCCCCCCCC
Q 001596 616 QYACGCLFLLSEVLKARPPLWNMVLQNESVDEDLEHFEDVVEETDNEPSDASKTEENDVKLVKRTDDAKSDSESSEDEDI 695 (1048)
Q Consensus 616 ~facg~L~LIseLLk~~P~L~~ll~~~e~~dd~~E~f~Dv~~~~d~~~~~~~k~e~~~~~~v~~~~~~~sd~~~~~~e~~ 695 (1048)
+++||+|.+|++|++++|.++.||...+...+ .+ ..+
T Consensus 81 ~~~~~~L~~i~~ll~~~p~l~~ll~~~~~~~~-------------~~----------------------------~~~-- 117 (164)
T PF03914_consen 81 SFALAILALIRKLLKRHPNLKSLLDNEEKKAD-------------SG----------------------------SEE-- 117 (164)
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHhcCCccccc-------------cc----------------------------hhh--
Confidence 99999999999999999999999965332100 00 000
Q ss_pred CCCCCCcCCCCchhhhhhhccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcchhHHHHHHhhccCch
Q 001596 696 PTSDSEEDVSDQPEELFIRDNSKDLQKSKAPSHHVPQPPTSSKSSLPGGYNPRHREPSYCNADHVSWWELMVLASHVHPS 775 (1048)
Q Consensus 696 ~~a~~~~~e~d~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~YDp~kRdP~yanA~~S~LWEL~~L~~HyHPS 775 (1048)
+++ + ....+.|||.+|||+||||..|+||||.+|++||||+
T Consensus 118 ------~~~-~--------------------------------~~~~~~Y~p~~~dP~~~~a~~s~lWEL~lL~~H~hP~ 158 (164)
T PF03914_consen 118 ------EDE-E--------------------------------DKSEDKYDPEKRDPEFSNALASSLWELNLLRNHYHPS 158 (164)
T ss_pred ------ccc-c--------------------------------cccccccCcCCCCHhHcCCchhHHHHHHHHHHCCCcH
Confidence 000 0 0124589999999999999999999999999999999
Q ss_pred HHHHHH
Q 001596 776 VSTMAG 781 (1048)
Q Consensus 776 Va~fA~ 781 (1048)
|+.||+
T Consensus 159 V~~~A~ 164 (164)
T PF03914_consen 159 VRQFAR 164 (164)
T ss_pred HHHHhC
Confidence 999995
No 4
>KOG2154 consensus Predicted nucleolar protein involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=6.7e-28 Score=270.43 Aligned_cols=225 Identities=22% Similarity=0.305 Sum_probs=191.8
Q ss_pred ccchhhHHHHHHhhH-HhhccCCCCchhhhHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhcCCCChhHHHHHHHhhh
Q 001596 490 IELDSRILSALLMGV-NRAFPYVSSNEADDIIEVQTPMLFKLVHSKNFNVAVQALMLLDKISSKNHIVSDRFYRALYSKL 568 (1048)
Q Consensus 490 ~e~~sKLLsALLtGV-NRA~Py~~~d~~ddi~e~~ldtLFrI~Hs~nfntsIQAL~LLfqI~s~~~~~sdRFYraLY~kL 568 (1048)
.++.-++-.-+|.++ .|..|+..... .+ +|=|++-.|..+-.+||.||+.||.+|.+||+.++.||..||. |
T Consensus 249 ~~ls~~lykkil~vih~rvip~l~~P~--kl----~DFLtdsyd~~~g~vslLALngLF~Lm~khNleYP~FY~KLY~-L 321 (505)
T KOG2154|consen 249 GELSLKLYKKILLVIHKRVIPHLISPT--KL----MDFLTDSYDDIGGVVSLLALNGLFILMTKHNLEYPDFYEKLYA-L 321 (505)
T ss_pred CcCcHHHHHHHHHHHHHHHhHhhcChH--HH----HHHHHHHHhccCCchhHHHHhHHHHHHHHcCCCCchHHHHHHH-h
Confidence 344555555666665 56788887652 23 4455555665555899999999999999999999999999997 9
Q ss_pred cCccccCCccHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCCccccccccCCCccc
Q 001596 569 LLPAAMNSSKAEMFIGLLHRAMKND-VNLKRVAAFSKRLLQVVLQQPPQYACGCLFLLSEVLKARPPLWNMVLQNESVDE 647 (1048)
Q Consensus 569 LdP~l~~SSk~~mfLnLL~ksLK~D-~~~~RVaAFVKRLLQval~~pP~facg~L~LIseLLk~~P~L~~ll~~~e~~dd 647 (1048)
++|++++.+.++.||.|+.-.|.+. .+..-||||+|||.++|+.+||..++-+|.+|.+|+++||.|+.|++.+...+
T Consensus 322 l~Pslfh~KyRarff~L~D~FLSSTHLpa~LvAsFlKrLaRlaL~APpeA~~~vipfI~Nll~rHp~c~~lvhr~~~~~- 400 (505)
T KOG2154|consen 322 LNPSLFHVKYRARFFRLADLFLSSTHLPAYLVASFLKRLARLALEAPPEAIVIVIPFICNLLRRHPNCQPLVHRSHALS- 400 (505)
T ss_pred cCchHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHhCCchhhhhccccccc-
Confidence 9999999999999999999999876 79999999999999999999999999999999999999999999998653210
Q ss_pred ccccccccccccCCCCCCcccccchhhhhhhcccccCCCCCCCCCCCCCCCCCCcCCCCchhhhhhhccccccccCCCCC
Q 001596 648 DLEHFEDVVEETDNEPSDASKTEENDVKLVKRTDDAKSDSESSEDEDIPTSDSEEDVSDQPEELFIRDNSKDLQKSKAPS 727 (1048)
Q Consensus 648 ~~E~f~Dv~~~~d~~~~~~~k~e~~~~~~v~~~~~~~sd~~~~~~e~~~~a~~~~~e~d~~~~~~~~~~~~~~~~~s~~~ 727 (1048)
T Consensus 401 -------------------------------------------------------------------------------- 400 (505)
T KOG2154|consen 401 -------------------------------------------------------------------------------- 400 (505)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcchhHHHHHHhhccCchHHHHHHHhhcC-CcccccCCCCccCcHHHHHH
Q 001596 728 HHVPQPPTSSKSSLPGGYNPRHREPSYCNADHVSWWELMVLASHVHPSVSTMAGTLLSG-ANIVYNGNPLSDLTLTAFLD 806 (1048)
Q Consensus 728 ~~~~~~~~~~~~~~~~~YDp~kRdP~yanA~~S~LWEL~~L~~HyHPSVa~fA~~LL~G-~~I~y~GdPL~DfTL~~FLD 806 (1048)
...++||+...||.-++|..|+||||..|+.||||+|+..|.-+-++ ..+.|++.|+.|.+....+|
T Consensus 401 ------------~~~Dpfd~~EtDP~ks~ALeSSLWEL~~Lq~Hy~p~Va~~A~~~~q~~~k~ef~~ed~ld~~y~~l~d 468 (505)
T KOG2154|consen 401 ------------LYDDPFDNDETDPKKSGALESSLWELELLQTHYHPEVAKAASFFNQSLYKPEFGLEDGLDSKYSVLQD 468 (505)
T ss_pred ------------CCCCCCCCCCCChhhhhhHHHHHHHHHHHHHhhcHHHHHHHHHHhccCccccccCcchhhhhhHHhhc
Confidence 01358999999999999999999999999999999999999988887 46778888988999888888
Q ss_pred HHHHhCCC
Q 001596 807 KFMEKKPK 814 (1048)
Q Consensus 807 RFvyknPK 814 (1048)
+-.-|.-|
T Consensus 469 ~el~~kgk 476 (505)
T KOG2154|consen 469 GELSRKGK 476 (505)
T ss_pred chhhcccC
Confidence 87766655
No 5
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.8e-27 Score=270.90 Aligned_cols=438 Identities=19% Similarity=0.277 Sum_probs=307.8
Q ss_pred HHHHHHHHHHHHhhChhhhHHHHHHHHHhhhccCChhHHHHHHHHHHHHHhcCCCCCCcccccccCCCCCCCCCcccccc
Q 001596 228 AADKVSAFSVIVGDNPMANLRSLDALLGMVSSKVGKRHALTGFEALKELFVSSLLPDRKLKTLVQRPLDNLPETKDGYSL 307 (1048)
Q Consensus 228 lsDKIaAltllVQesPvhnl~~L~~Ll~m~~~K~srr~al~Al~aLkdLF~~~LLPdRKLr~f~qqPl~~l~~~k~~~~~ 307 (1048)
..-|||+++..|.++|..|++.|.+|..||... .-...-.++-+|..|| .+|+|.||+|+...-- ..++-.+.+
T Consensus 190 ~K~kIA~l~s~llenPE~N~~~L~~l~eml~s~-n~~~~Kl~~lSLlaVF-KDIiP~YkIR~lte~E----k~~k~sKev 263 (704)
T KOG2153|consen 190 KKEKIASLCSKLLENPEENLKKLKELFEMLDSQ-NPKAKKLALLSLLAVF-KDIIPGYKIRPLTEKE----KRTKLSKEV 263 (704)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhhh-chHHHHHHHHHHHHHH-HhhcccceecccHHHH----hcccccHHH
Confidence 456899999999999999999999999999643 2233346899999999 6999999977543321 123334578
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCc------hHHHHHHHHHHHHHHhhcCch--hHHHHHHHhhhcCCCCCcchhhH
Q 001596 308 LLFWYYEEFLKQRYERFVLALEESSRDV------LPVLKTKALKIVYALLTSKPE--QEHRLLSALVNKLGDPQNKGASN 379 (1048)
Q Consensus 308 L~lWyFEd~LK~~Y~~Fvq~Le~ls~D~------l~~~R~kal~~i~~LL~~kPE--QE~~LL~lLVNKLGDp~~KVASk 379 (1048)
+.+|.||..|.++|..|+|.|+....++ ...+-.-|++|++.||...|+ ..++++.++|.-+.||.+-+.+
T Consensus 264 ~klr~yE~~Ll~~Yk~ylQkLe~~vK~~~~~~~~~v~l~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~- 342 (704)
T KOG2153|consen 264 LKLREYEQALLKQYKSYLQKLEQFVKDLSLRTPQQVSLAQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSS- 342 (704)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHH-
Confidence 9999999999999999999999999987 234566799999999999999 4689999999888888554432
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHhhcCCCCCcchHHHHHHHhhhhhcccCCCchHHHHHHHHHHHHHHHHHHhhc--c
Q 001596 380 ADFHLSNLLADHPNMKAVVINEVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLITEA--G 457 (1048)
Q Consensus 380 As~lL~~LL~~HP~MK~VVv~EVe~lLfRpni~~rAqYYAv~fLnQi~Ls~k~d~~~vA~~LI~iYF~lFk~lv~~~--~ 457 (1048)
-+|..+..++-.+| ...+...+|..+|-++-+|.. .|...+++++.++-..-.... .
T Consensus 343 -----------------~~i~t~k~lf~~D~-~g~~sl~~Vr~i~~llK~rn~---~v~~~~~~~~lsLri~ed~~~k~k 401 (704)
T KOG2153|consen 343 -----------------GCIQTIKTLFENDN-GGSGSLAIVRIINSLLKTRNY---EVLPDMITTFLSLRIDEDQTKKDK 401 (704)
T ss_pred -----------------HHHHHHHHHhcCCC-ccchhHHHHHHHHHHhhhhcc---cchhhHHHHHHhcchhhhccchhh
Confidence 34666677777777 567788899999999888765 577888888888753222111 0
Q ss_pred CCC---ccccccc--------cCCCCcCcccc-cccccCCC--C-----------------------CcccchhhHHHHH
Q 001596 458 AGD---KMDKNSK--------TGNKHISTFSK-KSQLKISP--E-----------------------PHIELDSRILSAL 500 (1048)
Q Consensus 458 ~~~---k~~Kk~K--------~~~K~~~~k~k-K~~~~~~~--e-----------------------~~~e~~sKLLsAL 500 (1048)
... +..+..+ +.+|.++...+ +.+...++ + ...+..+ +|.++
T Consensus 402 e~~~k~~~~k~~k~k~~~lskK~RK~kKe~~ki~rE~reaea~e~aeek~k~~sEiLkiVFtiYFrILkn~~~t-ll~~v 480 (704)
T KOG2153|consen 402 EDEKKQKNKKSSKKKLSSLSKKERKRKKERNKIEREMREAEAEESAEEKMKKQSEILKIVFTIYFRILKNDRYT-LLGAV 480 (704)
T ss_pred hccchhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHhcchhh-HHHHH
Confidence 011 0000000 10111000000 10111110 0 1223334 89999
Q ss_pred HhhHHhhccCCCCchhhhHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHhcC----CCChhHHHHHHHhhhcCcccc
Q 001596 501 LMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSK--NFNVAVQALMLLDKISSKN----HIVSDRFYRALYSKLLLPAAM 574 (1048)
Q Consensus 501 LtGVNRA~Py~~~d~~ddi~e~~ldtLFrI~Hs~--nfntsIQAL~LLfqI~s~~----~~~sdRFYraLY~kLLdP~l~ 574 (1048)
|.|+.++.++++.+++.+++ ..|-.|+... ....++.|...+|.|++.+ |++..+||..||+.|+-..+.
T Consensus 481 lEGlakf~h~invef~~dll----~vlk~ll~d~~~~~re~l~cvqtaf~IlS~qg~~lniD~~~fv~~lY~~l~~~~~~ 556 (704)
T KOG2153|consen 481 LEGLAKFAHLINVEFLGDLL----KVLKELLEDIELSYREALLCVQTAFCILSGQGEKLNIDLGKFVDHLYKMLFPMNLG 556 (704)
T ss_pred HhhHHHHhhhccHHHhhhHH----HHHHHHHHhhhHHHHHHHHHHHHHHHhhhccceeeccCHHHHHHHHHHHhcccccC
Confidence 99999999999998665555 3455555444 5667899999999999987 679999999999977765554
Q ss_pred CCcc-HHHHHHHHHHH-HhcCccHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCCccccccccCCCcccccccc
Q 001596 575 NSSK-AEMFIGLLHRA-MKNDVNLKRVAAFSKRLLQVVLQQPPQYACGCLFLLSEVLKARPPLWNMVLQNESVDEDLEHF 652 (1048)
Q Consensus 575 ~SSk-~~mfLnLL~ks-LK~D~~~~RVaAFVKRLLQval~~pP~facg~L~LIseLLk~~P~L~~ll~~~e~~dd~~E~f 652 (1048)
..-. -...|.|+.-. .+.-.++.+|.+|++|||..++|..+..-. +.+..+..++.+-+|+.
T Consensus 557 ~~~~~~~~ilr~~d~~~~k~r~~v~~~~~~~~~Ll~~~~h~~~~s~~----~s~~~~~~fsk~~~~~~------------ 620 (704)
T KOG2153|consen 557 PDDDGFAIILRLLDPLLIKIRKPVVNVITKMERLLKCSLHVFFNSKL----ISKYRDIEFSKRLNLLD------------ 620 (704)
T ss_pred CCcchHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccc----hHHHHHHHhhhhhhhhh------------
Confidence 4332 23555555443 234456677999999999998887664322 44555555555433221
Q ss_pred cccccccCCCCCCcccccchhhhhhhcccccCCCCCCCCCCCCCCCCCCcCCCCchhhhhhhccccccccCCCCCCCCCC
Q 001596 653 EDVVEETDNEPSDASKTEENDVKLVKRTDDAKSDSESSEDEDIPTSDSEEDVSDQPEELFIRDNSKDLQKSKAPSHHVPQ 732 (1048)
Q Consensus 653 ~Dv~~~~d~~~~~~~k~e~~~~~~v~~~~~~~sd~~~~~~e~~~~a~~~~~e~d~~~~~~~~~~~~~~~~~s~~~~~~~~ 732 (1048)
.+
T Consensus 621 ------------------------------------------------------------------------------~~ 622 (704)
T KOG2153|consen 621 ------------------------------------------------------------------------------SE 622 (704)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCcchhHHHHHHhhccCchHHHHHHHhhcCCcccccC--CC-CccCcHHHHHHHHH
Q 001596 733 PPTSSKSSLPGGYNPRHREPSYCNADHVSWWELMVLASHVHPSVSTMAGTLLSGANIVYNG--NP-LSDLTLTAFLDKFM 809 (1048)
Q Consensus 733 ~~~~~~~~~~~~YDp~kRdP~yanA~~S~LWEL~~L~~HyHPSVa~fA~~LL~G~~I~y~G--dP-L~DfTL~~FLDRFv 809 (1048)
-|+||++..+.|||+.+++ |||.|+.||..+.-|.++...| +| |...|-...++.|+
T Consensus 623 ------------------~pe~~s~a~~al~e~~l~r--y~~~~~~~a~~~~~G~~~~~~~a~~p~~s~~sa~~L~~~~~ 682 (704)
T KOG2153|consen 623 ------------------TPEYCSIASLALFEKLLLR--YHPISRLMASEIAIGVGATGEGALPPELSNLSAAELFEQDL 682 (704)
T ss_pred ------------------CccccccccHHHHHHHHHh--cchHHHHHHHHHhhcCCccCcCCCCccccCchHHHHhhhHH
Confidence 1999999999999999998 9999999999999998887777 55 66667777777776
Q ss_pred HhC
Q 001596 810 EKK 812 (1048)
Q Consensus 810 ykn 812 (1048)
-.+
T Consensus 683 ~~~ 685 (704)
T KOG2153|consen 683 LEM 685 (704)
T ss_pred HHh
Confidence 554
No 6
>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]
Probab=99.94 E-value=1e-24 Score=243.20 Aligned_cols=432 Identities=18% Similarity=0.279 Sum_probs=299.5
Q ss_pred hHHHHHHHHHHHHhhChhhhHHHHHHHHHhhhccCChhHHHHHHHHHHHHHhcCCCCCCcccccccCCCCCCCCCccccc
Q 001596 227 TAADKVSAFSVIVGDNPMANLRSLDALLGMVSSKVGKRHALTGFEALKELFVSSLLPDRKLKTLVQRPLDNLPETKDGYS 306 (1048)
Q Consensus 227 TlsDKIaAltllVQesPvhnl~~L~~Ll~m~~~K~srr~al~Al~aLkdLF~~~LLPdRKLr~f~qqPl~~l~~~k~~~~ 306 (1048)
..+-+||.++.-|-+.|+.|+..+..+..|+.++. -..+-..+-+|..+| ..|+|+||+|++.+.. ...+..+.
T Consensus 135 ~~Ke~ia~~~tki~EePeeNl~~~~~vf~mi~S~~-~~~kk~s~LsLl~VF-k~IIPgYkIRpL~e~E----q~~K~ske 208 (657)
T COG5117 135 SEKERIASICTKIIEEPEENLGMMEEVFSMITSMA-EKAKKVSYLSLLKVF-KAIIPGYKIRPLKEEE----QMVKDSKE 208 (657)
T ss_pred hHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcccc-hhhhhhhHHHHHHHH-HHhCccccccccchHH----hhhhhHHH
Confidence 35778999999999999999999999999998653 344556889999999 7999999988665432 13555668
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCc------hHHHHHHHHHHHHHHhhcCchh--HHHHHHHhhhcCCCCCcchhh
Q 001596 307 LLLFWYYEEFLKQRYERFVLALEESSRDV------LPVLKTKALKIVYALLTSKPEQ--EHRLLSALVNKLGDPQNKGAS 378 (1048)
Q Consensus 307 ~L~lWyFEd~LK~~Y~~Fvq~Le~ls~D~------l~~~R~kal~~i~~LL~~kPEQ--E~~LL~lLVNKLGDp~~KVAS 378 (1048)
++.+|-||..|..||..||+.|+..++++ +..+-.-|..++++|+....++ ...+.+++|..+-.|..
T Consensus 209 v~~l~~yeqsLl~~Y~~yi~tl~~~~k~~S~~~~~Q~SL~~vA~~~~~eli~~asHFN~~~kvfsl~lR~i~~~t~---- 284 (657)
T COG5117 209 VLHLKDYEQSLLRWYTSYIKTLVDDVKDESTLDETQSSLYQVAYISLCELIQHASHFNCTDKVFSLVLRGILGTTK---- 284 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhhCCCC----
Confidence 99999999999999999999999999997 3567778899999999888773 45555555553322211
Q ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCCCcchHHHHHHHhhhhhcccCCCchHHHHHHHHHHHHHHHHHHh---h
Q 001596 379 NADFHLSNLLADHPNMKAVVINEVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLIT---E 455 (1048)
Q Consensus 379 kAs~lL~~LL~~HP~MK~VVv~EVe~lLfRpni~~rAqYYAv~fLnQi~Ls~k~d~~~vA~~LI~iYF~lFk~lv~---~ 455 (1048)
.|..- .||+.+..+|--.+.+ +..+-|+..+|-|...++ +.|..-++++.|++- .+. .
T Consensus 285 ------------rp~s~-~ii~t~ks~leeD~~G-~~sl~~~~i~~~l~k~rN---~~vle~vld~~ls~n--~L~D~~~ 345 (657)
T COG5117 285 ------------RPVSM-LIIDTIKSKLEEDCTG-KTSLVATVIDQMLDKERN---PLVLEYVLDIPLSDN--SLRDEEK 345 (657)
T ss_pred ------------CchHH-HHHHHHHHHhcccccC-ceeEEeehHHHHHHhhhC---chhHHHHHhccchhh--hhhhhhh
Confidence 23322 3577888877665544 667778888888877775 468888999988873 111 0
Q ss_pred c------cC-CCccccc-----cccCCCCcCcccc-cccccCCCC-----------------------Ccccchhh-HHH
Q 001596 456 A------GA-GDKMDKN-----SKTGNKHISTFSK-KSQLKISPE-----------------------PHIELDSR-ILS 498 (1048)
Q Consensus 456 ~------~~-~~k~~Kk-----~K~~~K~~~~k~k-K~~~~~~~e-----------------------~~~e~~sK-LLs 498 (1048)
. .. ..|..|| +|+.+|..+...+ .+++..+.. ..-..+.+ ++.
T Consensus 346 ~~k~w~~n~~~~k~~KKd~~hlsKK~RK~~KE~~~I~~Emr~ae~i~~a~e~eknqseIlkiif~~Yf~vLk~~~k~lig 425 (657)
T COG5117 346 ARKYWEANKPVSKREKKDIFHLSKKLRKIEKERLRIQSEMRDAEDIEEAIEEEKNQSEILKIIFRLYFMVLKGDRKDLIG 425 (657)
T ss_pred hHHhhhcCCcchhhhhcchhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 0 00 0111111 1111111111100 001111000 01223455 899
Q ss_pred HHHhhHHhhccCCCCchhhhHHHHHHHHHHHHhhccch-----H---HHHHHHHHHHHHHhcC-----CCChhHHHHHHH
Q 001596 499 ALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNF-----N---VAVQALMLLDKISSKN-----HIVSDRFYRALY 565 (1048)
Q Consensus 499 ALLtGVNRA~Py~~~d~~ddi~e~~ldtLFrI~Hs~nf-----n---tsIQAL~LLfqI~s~~-----~~~sdRFYraLY 565 (1048)
.+|.||.|.-+.++.++..++++ .|+-++.-..| . .++.|....|.|.+.. |.+-+-|-..||
T Consensus 426 ~vleGl~k~~~~~n~eflGD~Le----vl~eL~~d~~~dk~ss~a~r~alLcI~tAF~i~S~t~ygk~n~Dl~~fVd~lY 501 (657)
T COG5117 426 YVLEGLVKYRKIINPEFLGDLLE----VLYELLNDNPLDKISSDARRQALLCILTAFEIASATLYGKENYDLGGFVDLLY 501 (657)
T ss_pred HHHHHHHHHHhhcCHHHHhHHHH----HHHHHHcCCchhhhhHHHHHHHHHHhhHHHHHhhhhhhhhccccHHHHHHHHH
Confidence 99999999999999876555554 56666544333 2 2344444567777654 677888888888
Q ss_pred hhh----cCcccc---------------------CCccHHHHHHHHHHH-Hh-cCccHHHHHHHHHHHHHHHhcCCchhH
Q 001596 566 SKL----LLPAAM---------------------NSSKAEMFIGLLHRA-MK-NDVNLKRVAAFSKRLLQVVLQQPPQYA 618 (1048)
Q Consensus 566 ~kL----LdP~l~---------------------~SSk~~mfLnLL~ks-LK-~D~~~~RVaAFVKRLLQval~~pP~fa 618 (1048)
+.+ |+|.+- .+.+..|+|..+.-. .| ....-+|..+|-|||+-.|.+.|-.|.
T Consensus 502 ~~v~p~~l~pD~dLn~k~~RL~DP~~~~~~~~VN~tt~~e~LlK~~~~~Ffksk~~~~~r~~~f~krl~~c~s~~pe~~~ 581 (657)
T COG5117 502 SMVHPMNLEPDADLNLKIKRLKDPDAPSKPFVVNATTDNEELLKIVRLLFFKSKQPVHRRHVIFKKRLLYCCSRSPEEFK 581 (657)
T ss_pred HHhCcccCCcchhhhhhhhhhcCCcccccCccccccccHHHHHHHHHHHheeccCchHHHHHHHHHHHHHHHccChHHHH
Confidence 744 333111 123556666433221 12 347889999999999988888888999
Q ss_pred HHHHHHHHHHHHhCCccccccccCCCcccccccccccccccCCCCCCcccccchhhhhhhcccccCCCCCCCCCCCCCCC
Q 001596 619 CGCLFLLSEVLKARPPLWNMVLQNESVDEDLEHFEDVVEETDNEPSDASKTEENDVKLVKRTDDAKSDSESSEDEDIPTS 698 (1048)
Q Consensus 619 cg~L~LIseLLk~~P~L~~ll~~~e~~dd~~E~f~Dv~~~~d~~~~~~~k~e~~~~~~v~~~~~~~sd~~~~~~e~~~~a 698 (1048)
.++|-++..|+.++|.|.++.....
T Consensus 582 ~ail~~~~kl~~rys~~s~l~~sE~------------------------------------------------------- 606 (657)
T COG5117 582 GAILDISAKLDIRYSDCSNLKCSEF------------------------------------------------------- 606 (657)
T ss_pred HHHHHHHHHHHhhhhhccCccCchh-------------------------------------------------------
Confidence 9999999999999999976543100
Q ss_pred CCCcCCCCchhhhhhhccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcchhHHHHHHhhccCchHHH
Q 001596 699 DSEEDVSDQPEELFIRDNSKDLQKSKAPSHHVPQPPTSSKSSLPGGYNPRHREPSYCNADHVSWWELMVLASHVHPSVST 778 (1048)
Q Consensus 699 ~~~~~e~d~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~YDp~kRdP~yanA~~S~LWEL~~L~~HyHPSVa~ 778 (1048)
..+.+.|||...||..+|.....|||-.+|.+||.|.|+.
T Consensus 607 ----------------------------------------~ig~g~~~~~~~nP~~SN~~tA~l~e~fLlk~hy~P~Vsq 646 (657)
T COG5117 607 ----------------------------------------DIGAGNVDSIPSNPDLSNSSTAVLFEYFLLKQHYSPAVSQ 646 (657)
T ss_pred ----------------------------------------hcCCcccccCCCCcccCCchhHHHHHHHHHHhhcCHHhHH
Confidence 0034689999999999999999999999999999999999
Q ss_pred HHHHhhcC
Q 001596 779 MAGTLLSG 786 (1048)
Q Consensus 779 fA~~LL~G 786 (1048)
-|+.|+..
T Consensus 647 ~~k~L~~~ 654 (657)
T COG5117 647 SAKELLKS 654 (657)
T ss_pred HHHHHHhh
Confidence 99999864
No 7
>PF07540 NOC3p: Nucleolar complex-associated protein; InterPro: IPR011501 Nucleolar complex-associated protein (Noc3p, Q07896 from SWISSPROT) is conserved in eukaryotes and plays essential roles in replication and rRNA processing in Saccharomyces cerevisiae [].
Probab=98.68 E-value=4.2e-08 Score=92.50 Aligned_cols=92 Identities=20% Similarity=0.377 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHhhChhhhHHHHHHHHHhhhccCChhHHHHHHHHHHHHHhcCCCCCCcccccccCCCCCCCCCcccccc
Q 001596 228 AADKVSAFSVIVGDNPMANLRSLDALLGMVSSKVGKRHALTGFEALKELFVSSLLPDRKLKTLVQRPLDNLPETKDGYSL 307 (1048)
Q Consensus 228 lsDKIaAltllVQesPvhnl~~L~~Ll~m~~~K~srr~al~Al~aLkdLF~~~LLPdRKLr~f~qqPl~~l~~~k~~~~~ 307 (1048)
.+-.||.++..|.+||.-|+..|..|+.||..+......-+||-||..+| .+|+|+||+|+...... ..+-++.+
T Consensus 4 ~K~~IA~l~~~ile~PE~ni~~lk~l~~~~~~~~~~~v~kLa~lSl~~VF-kDIiPgYrIR~~te~e~----~~kvsKev 78 (95)
T PF07540_consen 4 AKEEIASLASSILEDPEENIGSLKRLLKLCESKVDVTVRKLAILSLLAVF-KDIIPGYRIRPLTEKEK----KEKVSKEV 78 (95)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH-hhcCCCcccCCCChHHh----hhhHHHHH
Confidence 46789999999999999999999999999975433444457999999999 69999999987554321 12334578
Q ss_pred hhHHHHHHHHHHHHHHH
Q 001596 308 LLFWYYEEFLKQRYERF 324 (1048)
Q Consensus 308 L~lWyFEd~LK~~Y~~F 324 (1048)
..+|.||..|.+.|..|
T Consensus 79 ~~lr~~E~~Ll~~Y~~y 95 (95)
T PF07540_consen 79 RKLRDFEQSLLKNYQKY 95 (95)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99999999999999876
No 8
>PTZ00429 beta-adaptin; Provisional
Probab=98.02 E-value=0.0064 Score=76.26 Aligned_cols=246 Identities=11% Similarity=0.120 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchh--HHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCchH
Q 001596 319 QRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQ--EHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKA 396 (1048)
Q Consensus 319 ~~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQ--E~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~ 396 (1048)
......+..|.+.+.|+-+++|+.|+-+++.|....|+- +..++..|..-|.|++.-|.+.|...|..+....|..=.
T Consensus 136 ~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~ 215 (746)
T PTZ00429 136 SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE 215 (746)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH
Confidence 344556667788889999999999999999999999974 455666677778899999999999999999887776433
Q ss_pred HHHHHHHHhhcC-CCCCcchHHHHHHHhhhhhcccCCCchHHHHHHHHHHHHHHHHHHhhccCCCccccccccCCCCcCc
Q 001596 397 VVINEVDSFLFR-PHLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLITEAGAGDKMDKNSKTGNKHIST 475 (1048)
Q Consensus 397 VVv~EVe~lLfR-pni~~rAqYYAv~fLnQi~Ls~k~d~~~vA~~LI~iYF~lFk~lv~~~~~~~k~~Kk~K~~~K~~~~ 475 (1048)
....-+..++.+ |..+.-+|.|.+.+|.. ..+.++ .-+..+|..-... +..
T Consensus 216 l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~--y~P~~~--~e~~~il~~l~~~----Lq~-------------------- 267 (746)
T PTZ00429 216 SSNEWVNRLVYHLPECNEWGQLYILELLAA--QRPSDK--ESAETLLTRVLPR----MSH-------------------- 267 (746)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHh--cCCCCc--HHHHHHHHHHHHH----hcC--------------------
Confidence 334444555543 56678899999999954 333322 2233333322211 110
Q ss_pred ccccccccCCCCCcccchhhHHHHHHhhHHhhccCCCC---chhhhHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhc
Q 001596 476 FSKKSQLKISPEPHIELDSRILSALLMGVNRAFPYVSS---NEADDIIEVQTPMLFKLVHSKNFNVAVQALMLLDKISSK 552 (1048)
Q Consensus 476 k~kK~~~~~~~e~~~e~~sKLLsALLtGVNRA~Py~~~---d~~ddi~e~~ldtLFrI~Hs~nfntsIQAL~LLfqI~s~ 552 (1048)
.++ +.+|..++=.+.+... +.....+......|-.|. +.+-++..-+|.-|..|+..
T Consensus 268 ----------------~N~---AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~ 327 (746)
T PTZ00429 268 ----------------QNP---AVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLS-RRDAETQYIVCKNIHALLVI 327 (746)
T ss_pred ----------------CCH---HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhh-CCCccHHHHHHHHHHHHHHH
Confidence 011 2444444433333322 111112222223344443 34567887788777777777
Q ss_pred CCCChhHHHHHHHhhhcCccccCCccHHHHHHH--------HHHHHhc---CccHHHHHHHHHHHHHHHhc
Q 001596 553 NHIVSDRFYRALYSKLLLPAAMNSSKAEMFIGL--------LHRAMKN---DVNLKRVAAFSKRLLQVVLQ 612 (1048)
Q Consensus 553 ~~~~sdRFYraLY~kLLdP~l~~SSk~~mfLnL--------L~ksLK~---D~~~~RVaAFVKRLLQval~ 612 (1048)
+...-..+|+.+|-..-||.-....|-.+++.| |.+-|+. +.+..-+..-|+-|-++|+-
T Consensus 328 ~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k 398 (746)
T PTZ00429 328 FPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIK 398 (746)
T ss_pred CHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Confidence 765555679999987788874433333333322 2222222 44555555555555555543
No 9
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=97.49 E-value=0.00011 Score=89.00 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCC--cchhhHHHHHHHHHHhhCCCc
Q 001596 323 RFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQ--NKGASNADFHLSNLLADHPNM 394 (1048)
Q Consensus 323 ~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~--~KVASkAs~lL~~LL~~HP~M 394 (1048)
..|..|..-..||.-.+-.+|.-++..|++.+|---.....-++.-+=-|. .+-.=.|...|.|..-.|..-
T Consensus 341 ~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~ 414 (988)
T KOG2038|consen 341 NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVVIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKES 414 (988)
T ss_pred HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeehHHHHHHHHcccCccccceeehhhhhhhhHhccchH
Confidence 455667777889999999999999999999999755444444443333333 222223455666666666543
No 10
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.11 E-value=0.038 Score=65.71 Aligned_cols=193 Identities=18% Similarity=0.196 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhHHH-HHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCc----
Q 001596 320 RYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHR-LLSALVNKLGDPQNKGASNADFHLSNLLADHPNM---- 394 (1048)
Q Consensus 320 ~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~~-LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~M---- 394 (1048)
....++..+..++.|+.+++|++|+.+++.+....|+.=.. ++..|++-|.|++..|...|..+|..+ ...|..
T Consensus 111 ~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~ 189 (526)
T PF01602_consen 111 MAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSL 189 (526)
T ss_dssp HHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTH
T ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhh
Confidence 34556777888888999999999999999999999996333 899999999999999999999999999 222222
Q ss_pred hHHHHHHHHHhhcCCCCCcchHHHHHHHhhhhhcccCCCchHHH--HHHHHHHHHHHHHHHhhccCCCccccccccCCCC
Q 001596 395 KAVVINEVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKGDGPKVA--KRLIDVYFALFKVLITEAGAGDKMDKNSKTGNKH 472 (1048)
Q Consensus 395 K~VVv~EVe~lLfRpni~~rAqYYAv~fLnQi~Ls~k~d~~~vA--~~LI~iYF~lFk~lv~~~~~~~k~~Kk~K~~~K~ 472 (1048)
-.-+++-+.+++ +..++-.|-.++.+|..+.-.. +..+ ..++...+.++..
T Consensus 190 ~~~~~~~L~~~l--~~~~~~~q~~il~~l~~~~~~~----~~~~~~~~~i~~l~~~l~s--------------------- 242 (526)
T PF01602_consen 190 IPKLIRILCQLL--SDPDPWLQIKILRLLRRYAPME----PEDADKNRIIEPLLNLLQS--------------------- 242 (526)
T ss_dssp HHHHHHHHHHHH--TCCSHHHHHHHHHHHTTSTSSS----HHHHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHhhhcc--cccchHHHHHHHHHHHhcccCC----hhhhhHHHHHHHHHHHhhc---------------------
Confidence 222333334444 4456677888888888775332 3445 4577766666531
Q ss_pred cCcccccccccCCCCCcccchhhHHHHHHhhHHhhccCCCCchhhhHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhc
Q 001596 473 ISTFSKKSQLKISPEPHIELDSRILSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNFNVAVQALMLLDKISSK 552 (1048)
Q Consensus 473 ~~~k~kK~~~~~~~e~~~e~~sKLLsALLtGVNRA~Py~~~d~~ddi~e~~ldtLFrI~Hs~nfntsIQAL~LLfqI~s~ 552 (1048)
.--+.++..++=.+-+... ..++..-++.|-++.++.+.|+...||..|.+|...
T Consensus 243 ----------------------~~~~V~~e~~~~i~~l~~~---~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~ 297 (526)
T PF01602_consen 243 ----------------------SSPSVVYEAIRLIIKLSPS---PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQS 297 (526)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHSSS---HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCH
T ss_pred ----------------------cccHHHHHHHHHHHHhhcc---hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcc
Confidence 1111222222222222222 125666778888888888999999999999999887
Q ss_pred C-CCChhHHHHHHH
Q 001596 553 N-HIVSDRFYRALY 565 (1048)
Q Consensus 553 ~-~~~sdRFYraLY 565 (1048)
+ ......++..+|
T Consensus 298 ~~~~v~~~~~~~~~ 311 (526)
T PF01602_consen 298 NPPAVFNQSLILFF 311 (526)
T ss_dssp CHHHHGTHHHHHHH
T ss_pred cchhhhhhhhhhhe
Confidence 6 333344444443
No 11
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.84 E-value=0.00057 Score=83.61 Aligned_cols=8 Identities=25% Similarity=0.625 Sum_probs=3.4
Q ss_pred hhHHHHHH
Q 001596 852 EDLVFHKF 859 (1048)
Q Consensus 852 de~FFh~y 859 (1048)
++.||--|
T Consensus 1335 k~p~fSSF 1342 (1516)
T KOG1832|consen 1335 KHPLFSSF 1342 (1516)
T ss_pred ccchhhhh
Confidence 34444443
No 12
>PTZ00429 beta-adaptin; Provisional
Probab=96.43 E-value=1.2 Score=56.50 Aligned_cols=120 Identities=14% Similarity=0.148 Sum_probs=92.0
Q ss_pred cchhHHHHHHHHHHHHH---HHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHH
Q 001596 306 SLLLFWYYEEFLKQRYE---RFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADF 382 (1048)
Q Consensus 306 ~~L~lWyFEd~LK~~Y~---~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~ 382 (1048)
+.|++-|...+.+..=. --|+.|.+=+.|+-+.+|--||++++.+-. |+-=..++..+..-|.|++.-|-..|..
T Consensus 85 KKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~l~~~lkk~L~D~~pYVRKtAal 162 (746)
T PTZ00429 85 KKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEYTLEPLRRAVADPDPYVRKTAAM 162 (746)
T ss_pred HHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 45677777766553322 345667777888999999999999988653 5655677778888899999999999999
Q ss_pred HHHHHHhhCCCchH--HHHHHHHHhhcCCCCCcchHHHHHHHhhhhhcc
Q 001596 383 HLSNLLADHPNMKA--VVINEVDSFLFRPHLGLRAKYHAVNFLSQIRLS 429 (1048)
Q Consensus 383 lL~~LL~~HP~MK~--VVv~EVe~lLfRpni~~rAqYYAv~fLnQi~Ls 429 (1048)
++.+|.+..|.+-. -++.++..+|.. .+.-.++.|++.|+.|.-.
T Consensus 163 ai~Kly~~~pelv~~~~~~~~L~~LL~D--~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 163 GLGKLFHDDMQLFYQQDFKKDLVELLND--NNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHHHHHhhCcccccccchHHHHHHHhcC--CCccHHHHHHHHHHHHHHh
Confidence 99999999998732 346677777754 3567889999999999643
No 13
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.0082 Score=72.44 Aligned_cols=97 Identities=21% Similarity=0.233 Sum_probs=79.1
Q ss_pred ccHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCCccccccccCCCcccccccccccccccCCCCCCcccccchh
Q 001596 594 VNLKRVAAFSKRLLQVVLQQPPQYACGCLFLLSEVLKARPPLWNMVLQNESVDEDLEHFEDVVEETDNEPSDASKTEEND 673 (1048)
Q Consensus 594 ~~~~RVaAFVKRLLQval~~pP~facg~L~LIseLLk~~P~L~~ll~~~e~~dd~~E~f~Dv~~~~d~~~~~~~k~e~~~ 673 (1048)
+...|..+|.||+.-.+.+.|-...++.+.|+-.+|-+++.+-.++.-..
T Consensus 604 ~s~~~~~~fsk~~~~~~~~~pe~~s~a~~al~e~~l~ry~~~~~~~a~~~------------------------------ 653 (704)
T KOG2153|consen 604 ISKYRDIEFSKRLNLLDSETPEYCSIASLALFEKLLLRYHPISRLMASEI------------------------------ 653 (704)
T ss_pred hHHHHHHHhhhhhhhhhccCccccccccHHHHHHHHHhcchHHHHHHHHH------------------------------
Confidence 67899999999999888888777788889999888888887755442100
Q ss_pred hhhhhcccccCCCCCCCCCCCCCCCCCCcCCCCchhhhhhhccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 001596 674 VKLVKRTDDAKSDSESSEDEDIPTSDSEEDVSDQPEELFIRDNSKDLQKSKAPSHHVPQPPTSSKSSLPGGYNPRHREPS 753 (1048)
Q Consensus 674 ~~~v~~~~~~~sd~~~~~~e~~~~a~~~~~e~d~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~YDp~kRdP~ 753 (1048)
. .+.+.|.+..-+|.
T Consensus 654 --------------------------------------------------------~---------~G~~~~~~~a~~p~ 668 (704)
T KOG2153|consen 654 --------------------------------------------------------A---------IGVGATGEGALPPE 668 (704)
T ss_pred --------------------------------------------------------h---------hcCCccCcCCCCcc
Confidence 0 02457888888999
Q ss_pred cCCCCcchhHHHHHHhhccCchHHHHHHHhhc
Q 001596 754 YCNADHVSWWELMVLASHVHPSVSTMAGTLLS 785 (1048)
Q Consensus 754 yanA~~S~LWEL~~L~~HyHPSVa~fA~~LL~ 785 (1048)
.+|-..+.|||-.+|..||.|+|..=+++++.
T Consensus 669 ~s~~sa~~L~~~~~~~~~~~P~v~~~~kql~~ 700 (704)
T KOG2153|consen 669 LSNLSAAELFEQDLLEMHYNPTVPLSLKQLYK 700 (704)
T ss_pred ccCchHHHHhhhHHHHhccCCCCCchHHHHHH
Confidence 99999999999999999999999999888764
No 14
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=95.87 E-value=0.013 Score=74.74 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=16.7
Q ss_pred CCCccc-----chhhhhhhhccCCCcc
Q 001596 1008 GATPFA-----SLEDYQHLLDDNDPSE 1029 (1048)
Q Consensus 1008 ~~s~Fa-----s~e~f~~~l~~~~~~~ 1029 (1048)
..-||. |.++|..+|.......
T Consensus 416 ~elPftf~~P~s~eel~~lL~~~~~~~ 442 (840)
T PF04147_consen 416 SELPFTFPCPSSHEELLELLDGYSPED 442 (840)
T ss_pred cCCCceecCCCCHHHHHHHHhcCCHHH
Confidence 366776 8999999999876443
No 15
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=95.82 E-value=0.0046 Score=71.93 Aligned_cols=11 Identities=45% Similarity=0.779 Sum_probs=4.1
Q ss_pred CCCCCCCCCch
Q 001596 983 AEDDGSDEGSK 993 (1048)
Q Consensus 983 d~~d~~~~~~~ 993 (1048)
+.+|+++++++
T Consensus 111 dSDDEdD~~sd 121 (458)
T PF10446_consen 111 DSDDEDDDGSD 121 (458)
T ss_pred ccccccccccc
Confidence 33333333333
No 16
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.77 E-value=4.7 Score=49.04 Aligned_cols=100 Identities=16% Similarity=0.210 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCch-----hHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCch
Q 001596 321 YERFVLALEESSRDVLPVLKTKALKIVYALLTSKPE-----QEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMK 395 (1048)
Q Consensus 321 Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPE-----QE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK 395 (1048)
...+...|...+..+-+.+|.-+++.+..++..... .+..++.++++-|+||+-.||..|+..|..|....+++.
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~ 154 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE 154 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH
Confidence 556666777778888899999999999998877766 457889999999999999999999999999999888886
Q ss_pred HH----HHHHHHHhhcCCCCCcchHHHHH
Q 001596 396 AV----VINEVDSFLFRPHLGLRAKYHAV 420 (1048)
Q Consensus 396 ~V----Vv~EVe~lLfRpni~~rAqYYAv 420 (1048)
.+ ++..+..++-+++-..|-+.|.+
T Consensus 155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el 183 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMSQSSDIVRCRVYEL 183 (503)
T ss_pred HHhCcchHHHHHHHHhccCHHHHHHHHHH
Confidence 54 26677778877554445444443
No 17
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.71 E-value=0.46 Score=58.68 Aligned_cols=68 Identities=24% Similarity=0.303 Sum_probs=62.1
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCch
Q 001596 328 LEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMK 395 (1048)
Q Consensus 328 Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK 395 (1048)
+-.+++.+.+++|+||+.++|.+.-..||-=+--..-||.||-||+..|.|-|...++.|-++.|---
T Consensus 149 v~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 149 VFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 34567778899999999999999999999999999999999999999999999999999999998643
No 18
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.86 E-value=0.93 Score=47.34 Aligned_cols=122 Identities=22% Similarity=0.212 Sum_probs=82.7
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCch-hHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhh-CCCchHHHHH
Q 001596 323 RFVLALEESSRDVLPVLKTKALKIVYALLTSKPE-QEHRLLSALVNKLGDPQNKGASNADFHLSNLLAD-HPNMKAVVIN 400 (1048)
Q Consensus 323 ~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPE-QE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~-HP~MK~VVv~ 400 (1048)
.++..|-..++|+-+.+|..|+.++..|+..-.- -+..++..++.-|.|++..|.+.|.+++.+++.. +|++=.-+.-
T Consensus 25 ~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~ 104 (178)
T PF12717_consen 25 PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFP 104 (178)
T ss_pred hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3445666788999999999999999999976433 2334445555666999999999999999999999 8887655555
Q ss_pred HHHHhhcCC-------CCCcchHHHHHHHhhhhhcccCCCchHHHHHHHHHHHHHH
Q 001596 401 EVDSFLFRP-------HLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALF 449 (1048)
Q Consensus 401 EVe~lLfRp-------ni~~rAqYYAv~fLnQi~Ls~k~d~~~vA~~LI~iYF~lF 449 (1048)
++-..|-.+ ..+.....+.+.||-+.+-. ++....|+.-+..-|
T Consensus 105 e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-----d~~~~~l~~kl~~~~ 155 (178)
T PF12717_consen 105 ELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-----DKQKESLVEKLCQRF 155 (178)
T ss_pred HHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc-----HHHHHHHHHHHHHHH
Confidence 544444332 23334455666777666532 134455555544444
No 19
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=93.49 E-value=4.1 Score=48.64 Aligned_cols=117 Identities=20% Similarity=0.313 Sum_probs=92.9
Q ss_pred cchhHHHHHHHHHHHHHH---HHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHH
Q 001596 306 SLLLFWYYEEFLKQRYER---FVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADF 382 (1048)
Q Consensus 306 ~~L~lWyFEd~LK~~Y~~---Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~ 382 (1048)
+++.+-|++..+...... .+..|.+-+.++-+.+|.-||+++..+- .||-=..|+..+.+-|.||..-|-.+|..
T Consensus 59 Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~l~~~v~~ll~~~~~~VRk~A~~ 136 (526)
T PF01602_consen 59 KRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEPLIPDVIKLLSDPSPYVRKKAAL 136 (526)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHHSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhHHHHHHHHHhcCCchHHHHHHHH
Confidence 455555555555444432 4555666677788999999999999966 77877889999999999999999999999
Q ss_pred HHHHHHhhCCCchHH-HHHHHHHhhcCCCCCcchHHHHHHHhhhh
Q 001596 383 HLSNLLADHPNMKAV-VINEVDSFLFRPHLGLRAKYHAVNFLSQI 426 (1048)
Q Consensus 383 lL~~LL~~HP~MK~V-Vv~EVe~lLfRpni~~rAqYYAv~fLnQi 426 (1048)
.|.++.+..|..-.. ++..+..+|.-++ ...++.|+..|+++
T Consensus 137 ~l~~i~~~~p~~~~~~~~~~l~~lL~d~~--~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 137 ALLKIYRKDPDLVEDELIPKLKQLLSDKD--PSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHHCHCCHHGGHHHHHHHHTTHSS--HHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhhhccCCc--chhHHHHHHHHHHH
Confidence 999999999998655 7889999985554 56778899999999
No 20
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=93.49 E-value=0.08 Score=67.29 Aligned_cols=37 Identities=14% Similarity=-0.055 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhH
Q 001596 321 YERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQE 358 (1048)
Q Consensus 321 Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE 358 (1048)
++.+|..|-.++.. ..++|..++.+++..|...+..+
T Consensus 93 ~~~~l~~l~~l~~~-k~~l~e~~~~~l~~~l~~~~~~~ 129 (784)
T PF04931_consen 93 LFSVLDLLLKLSSK-KSWLRESCGWVLVQALKESWFEE 129 (784)
T ss_pred HHHHHHHHHhhhhc-hHHHHHHHHHHHHHHHHhcchhh
Confidence 44555555555433 56777777777777777666554
No 21
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=93.15 E-value=0.061 Score=58.91 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=22.6
Q ss_pred chhHHHHHHhhccCchHHHHHHHhhc
Q 001596 760 VSWWELMVLASHVHPSVSTMAGTLLS 785 (1048)
Q Consensus 760 S~LWEL~~L~~HyHPSVa~fA~~LL~ 785 (1048)
+-|||=..|+..|--...++-.+||-
T Consensus 74 ~klwErikLSkNyekALeQIde~Ll~ 99 (303)
T KOG3064|consen 74 RKLWERIKLSKNYEKALEQIDEQLLY 99 (303)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHhc
Confidence 46999999999999988888888774
No 22
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=93.08 E-value=0.068 Score=67.90 Aligned_cols=14 Identities=36% Similarity=0.377 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhCCC
Q 001596 801 LTAFLDKFMEKKPK 814 (1048)
Q Consensus 801 L~~FLDRFvyknPK 814 (1048)
|..-.+|+.-+..|
T Consensus 559 l~~c~~~~~~~~~~ 572 (784)
T PF04931_consen 559 LQICYEKAFGKKKK 572 (784)
T ss_pred HHHHHHHHhcccch
Confidence 34444555555544
No 23
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.79 E-value=27 Score=44.24 Aligned_cols=123 Identities=22% Similarity=0.276 Sum_probs=68.9
Q ss_pred chhhHHHHHHhhHHhhccCCCCchhhhHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhcCCCC--hhHHHHHH-Hhhh
Q 001596 492 LDSRILSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNFNVAVQALMLLDKISSKNHIV--SDRFYRAL-YSKL 568 (1048)
Q Consensus 492 ~~sKLLsALLtGVNRA~Py~~~d~~ddi~e~~ldtLFrI~Hs~nfntsIQAL~LLfqI~s~~~~~--sdRFYraL-Y~kL 568 (1048)
.+-++|+-+.+-|=|++---.. ++-..-++..+.|+-+-|+.--+|- |-+.++.+++.. -.+=||.| -+.|
T Consensus 310 ~~~~il~~l~mDvLrvLss~dl----dvr~Ktldi~ldLvssrNvediv~~--Lkke~~kT~~~e~d~~~~yRqlLikti 383 (948)
T KOG1058|consen 310 LHEKILQGLIMDVLRVLSSPDL----DVRSKTLDIALDLVSSRNVEDIVQF--LKKEVMKTHNEESDDNGKYRQLLIKTI 383 (948)
T ss_pred hhHHHHHHHHHHHHHHcCcccc----cHHHHHHHHHHhhhhhccHHHHHHH--HHHHHHhccccccccchHHHHHHHHHH
Confidence 3456666666666555432222 2445556667777777777766654 346777766552 23334433 3333
Q ss_pred cCccccCCccHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCCccccccc
Q 001596 569 LLPAAMNSSKAEMFIGLLHRAMKNDVNLKRVAAFSKRLLQVVLQQPPQYACGCLFLLSEVLKARPPLWNMVL 640 (1048)
Q Consensus 569 LdP~l~~SSk~~mfLnLL~ksLK~D~~~~RVaAFVKRLLQval~~pP~facg~L~LIseLLk~~P~L~~ll~ 640 (1048)
..-.+-...-.+-.+.+|..+|. -.++..+.++|.+|++++..+|.|+..|.
T Consensus 384 h~cav~Fp~~aatvV~~ll~fis--------------------D~N~~aas~vl~FvrE~iek~p~Lr~~ii 435 (948)
T KOG1058|consen 384 HACAVKFPEVAATVVSLLLDFIS--------------------DSNEAAASDVLMFVREAIEKFPNLRASII 435 (948)
T ss_pred HHHhhcChHHHHHHHHHHHHHhc--------------------cCCHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 32222222333444444444443 23556777888888888888888877664
No 24
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.28 E-value=9.9 Score=48.13 Aligned_cols=245 Identities=16% Similarity=0.187 Sum_probs=148.5
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCchHHHHHHHHHhhc
Q 001596 328 LEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVVINEVDSFLF 407 (1048)
Q Consensus 328 Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~VVv~EVe~lLf 407 (1048)
.|++++.+-+++|+||+-|++.+...-|++...++.-.-..|-+.+.-|---+.+++..+....|.+-.-.-.-|..|+
T Consensus 147 Ve~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV- 225 (866)
T KOG1062|consen 147 VERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLV- 225 (866)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHH-
Confidence 4666667788999999999999999999999998888888888888777777777788887777755433233233332
Q ss_pred CCCCCcchHHHHHHHhhhhhccc---CCC-----chHHHHHHHHHHHHHHHHHHhhccCCCccccccccCCCCcCccccc
Q 001596 408 RPHLGLRAKYHAVNFLSQIRLSH---KGD-----GPKVAKRLIDVYFALFKVLITEAGAGDKMDKNSKTGNKHISTFSKK 479 (1048)
Q Consensus 408 Rpni~~rAqYYAv~fLnQi~Ls~---k~d-----~~~vA~~LI~iYF~lFk~lv~~~~~~~k~~Kk~K~~~K~~~~k~kK 479 (1048)
..|-|++.+. ..| +|-+.-+++.+ .+.+-. ..
T Consensus 226 -------------~iLk~l~~~~yspeydv~gi~dPFLQi~iLrl----LriLGq-~d---------------------- 265 (866)
T KOG1062|consen 226 -------------KILKQLTNSGYSPEYDVHGISDPFLQIRILRL----LRILGQ-ND---------------------- 265 (866)
T ss_pred -------------HHHHHHhcCCCCCccCccCCCchHHHHHHHHH----HHHhcC-CC----------------------
Confidence 2222222221 111 11121122111 111110 00
Q ss_pred ccccCCCCCcccchhhHHHHHHhhHHhh------------------ccCCCCchhhhHHHHHHHHHHHHhhccchHHHHH
Q 001596 480 SQLKISPEPHIELDSRILSALLMGVNRA------------------FPYVSSNEADDIIEVQTPMLFKLVHSKNFNVAVQ 541 (1048)
Q Consensus 480 ~~~~~~~e~~~e~~sKLLsALLtGVNRA------------------~Py~~~d~~ddi~e~~ldtLFrI~Hs~nfntsIQ 541 (1048)
.--|-+|+=||.-|.|- .=-+..+ ..+..--++.|=|-.-...-|+.-.
T Consensus 266 -----------~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~--~~LrvlainiLgkFL~n~d~NirYv 332 (866)
T KOG1062|consen 266 -----------ADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSN--SGLRVLAINILGKFLLNRDNNIRYV 332 (866)
T ss_pred -----------ccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCC--chHHHHHHHHHHHHhcCCccceeee
Confidence 00122222222222111 1111111 1233333455555555556688888
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHhhhcCccccCCccHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhcCCchhHHHH
Q 001596 542 ALMLLDKISSKNHIVSDRFYRALYSKLLLPAAMNSSKAEMFIGLLHRAMKNDVNLKRVAAFSKRLLQVVLQQPPQYACGC 621 (1048)
Q Consensus 542 AL~LLfqI~s~~~~~sdRFYraLY~kLLdP~l~~SSk~~mfLnLL~ksLK~D~~~~RVaAFVKRLLQval~~pP~facg~ 621 (1048)
||..|..++........|-=.+.-+.|-||.. |-+..-|-|+|+-+ +..-|...||+|+-..-.+.+.|..-|
T Consensus 333 aLn~L~r~V~~d~~avqrHr~tIleCL~DpD~---SIkrralELs~~lv----n~~Nv~~mv~eLl~fL~~~d~~~k~~~ 405 (866)
T KOG1062|consen 333 ALNMLLRVVQQDPTAVQRHRSTILECLKDPDV---SIKRRALELSYALV----NESNVRVMVKELLEFLESSDEDFKADI 405 (866)
T ss_pred ehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcH---HHHHHHHHHHHHHh----ccccHHHHHHHHHHHHHhccHHHHHHH
Confidence 88888888888888888888899999999974 44555667777653 456678889999988777788887777
Q ss_pred HHHHHHHHHhCC
Q 001596 622 LFLLSEVLKARP 633 (1048)
Q Consensus 622 L~LIseLLk~~P 633 (1048)
..=|.++.-++-
T Consensus 406 as~I~~laEkfa 417 (866)
T KOG1062|consen 406 ASKIAELAEKFA 417 (866)
T ss_pred HHHHHHHHHhcC
Confidence 666666655543
No 25
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.60 E-value=3.8 Score=50.35 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=22.8
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhHH
Q 001596 325 VLALEESSRDVLPVLKTKALKIVYALLTSKPEQEH 359 (1048)
Q Consensus 325 vq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~ 359 (1048)
+.++-.+|.|.-..+|..||+-+-.|-+..||.=.
T Consensus 61 i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~ 95 (556)
T PF05918_consen 61 INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS 95 (556)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH
T ss_pred HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh
Confidence 45667788899999999999988888777665433
No 26
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=90.30 E-value=5.8 Score=46.03 Aligned_cols=192 Identities=20% Similarity=0.256 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHhhchHHHHHHHHHHHHhhChhhhHHHHHHHHHhhhccCChhHHH
Q 001596 188 VERKRELGERLLWQYVSDYEGSRGQTGDIKMLAATQRSGTAADKVSAFSVIVGDNPMANLRSLDALLGMVSSKVGKRHAL 267 (1048)
Q Consensus 188 v~~~~~~a~~ll~~~~~~y~~~~~~~Sd~kwl~ti~~sGTlsDKIaAltllVQesPvhnl~~L~~Ll~m~~~K~srr~al 267 (1048)
++.+-.....++.....-|+..-..-.=..+|+..+ |.-+++-.|..+| .+..+...+. -.+-..|.
T Consensus 116 v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~-------k~e~l~~~iL~~~-----~f~~ff~~~~-~~~Fdias 182 (335)
T PF08569_consen 116 VDYLERHRPEILDILLRGYENPDIALNCGDMLRECI-------KHESLAKIILYSE-----CFWKFFKYVQ-LPNFDIAS 182 (335)
T ss_dssp HHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHT-------TSHHHHHHHHTSG-----GGGGHHHHTT-SSSHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHH-------hhHHHHHHHhCcH-----HHHHHHHHhc-CCccHhHH
Confidence 444444445566666666653211111112333222 3345555666666 4555777764 34677888
Q ss_pred HHHHHHHHHHhcCCCCCCcccccccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 001596 268 TGFEALKELFVSSLLPDRKLKTLVQRPLDNLPETKDGYSLLLFWYYEEFLKQRYERFVLALEESSRDVLPVLKTKALKIV 347 (1048)
Q Consensus 268 ~Al~aLkdLF~~~LLPdRKLr~f~qqPl~~l~~~k~~~~~L~lWyFEd~LK~~Y~~Fvq~Le~ls~D~l~~~R~kal~~i 347 (1048)
.|+.++++||..+ ..+.- .+|..-|.+|.+.+..++..+-=.+|.++|..+
T Consensus 183 daf~t~~~llt~h-------------------------k~~~a----~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL 233 (335)
T PF08569_consen 183 DAFSTFKELLTRH-------------------------KKLVA----EFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLL 233 (335)
T ss_dssp HHHHHHHHHHHSS-------------------------HHHHH----HHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-------------------------HHHHH----HHHHHHHHHHHHHHHHHccCCCeEeehhhHHHH
Confidence 9999999999621 11222 256788999999999999988889999999999
Q ss_pred HHHhhcCchhH--------HHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCCCcchHHHH
Q 001596 348 YALLTSKPEQE--------HRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVVINEVDSFLFRPHLGLRAKYHA 419 (1048)
Q Consensus 348 ~~LL~~kPEQE--------~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~VVv~EVe~lLfRpni~~rAqYYA 419 (1048)
.+||..++-.+ ...|.++.|-|.|+++.|.-.| +|+.++..+.|+--.-|+ .+|. +-+=--
T Consensus 234 ~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eA-FhvFKvFVANp~K~~~I~----~iL~------~Nr~kL 302 (335)
T PF08569_consen 234 GELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEA-FHVFKVFVANPNKPPPIV----DILI------KNREKL 302 (335)
T ss_dssp HHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHH-HHHHHHHHH-SS-BHHHH----HHHH------HTHHHH
T ss_pred HHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHH-HHHHHHHHhCCCCChHHH----HHHH------HHHHHH
Confidence 99999888754 5679999999999999998887 788889999998766544 3443 223345
Q ss_pred HHHhhhhhcccCC
Q 001596 420 VNFLSQIRLSHKG 432 (1048)
Q Consensus 420 v~fLnQi~Ls~k~ 432 (1048)
+.||.+....+.+
T Consensus 303 l~fl~~f~~~~~~ 315 (335)
T PF08569_consen 303 LRFLKDFHTDRTD 315 (335)
T ss_dssp HHHHHTTTTT--S
T ss_pred HHHHHhCCCCCCc
Confidence 6777777666643
No 27
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=89.54 E-value=33 Score=48.40 Aligned_cols=199 Identities=17% Similarity=0.107 Sum_probs=119.2
Q ss_pred HHHHHHHHHHH--HhhChhhhHHHH------HHHHHhhhccCChhHHHHHHHHHHHHHhcCCCCCCcccccc--cCCCCC
Q 001596 228 AADKVSAFSVI--VGDNPMANLRSL------DALLGMVSSKVGKRHALTGFEALKELFVSSLLPDRKLKTLV--QRPLDN 297 (1048)
Q Consensus 228 lsDKIaAltll--VQesPvhnl~~L------~~Ll~m~~~K~srr~al~Al~aLkdLF~~~LLPdRKLr~f~--qqPl~~ 297 (1048)
+.|.+.|++.+ +-+.+..+.+.+ ..|++||..+...-.-..++.+|..||.+-.+ +++..=. .+++-.
T Consensus 334 ~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l--~~~L~~~daik~LV~ 411 (2102)
T PLN03200 334 IADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYL--SRKLNHAEAKKVLVG 411 (2102)
T ss_pred HHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHH--HHHHHhccchhhhhh
Confidence 34777777666 334555555553 57999996543211113467788777743311 1211100 011111
Q ss_pred -CCCCccccc---chhHHHHH---HHHHH--HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhHH-----HHHH
Q 001596 298 -LPETKDGYS---LLLFWYYE---EFLKQ--RYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEH-----RLLS 363 (1048)
Q Consensus 298 -l~~~k~~~~---~L~lWyFE---d~LK~--~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~-----~LL~ 363 (1048)
+.......+ ...+||.= ....+ .-...|..|-.++..+-...+..|+..+..|-...++|.. ..+.
T Consensus 412 LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP 491 (2102)
T PLN03200 412 LITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIP 491 (2102)
T ss_pred hhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 111111112 22333321 11111 1223677887777777788999999888888788888764 5678
Q ss_pred HhhhcCCCCCcchhhHHHHHHHHHHhhCCCchHHHHH-----HHHHhhcCCCCCcchHHHHHHHhhhhhccc
Q 001596 364 ALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVVIN-----EVDSFLFRPHLGLRAKYHAVNFLSQIRLSH 430 (1048)
Q Consensus 364 lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~VVv~-----EVe~lLfRpni~~rAqYYAv~fLnQi~Ls~ 430 (1048)
.||+=|..++.++-..|.+.|..|-...++.+.+|.+ -+..+| +.+ +.++|-.|+..|..+....
T Consensus 492 ~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sg-d~~~q~~Aa~AL~nLi~~~ 561 (2102)
T PLN03200 492 PLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNG-GPKGQEIAAKTLTKLVRTA 561 (2102)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCC-CHHHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999988755566666643 223344 333 5789999999999986543
No 28
>PF14632 SPT6_acidic: Acidic N-terminal SPT6
Probab=87.68 E-value=0.44 Score=45.34 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=20.6
Q ss_pred CCcccchhhhhhhhccCCCccccchhhhhhhhhhc
Q 001596 1009 ATPFASLEDYQHLLDDNDPSEMKSAGEKKLNLKKK 1043 (1048)
Q Consensus 1009 ~s~Fas~e~f~~~l~~~~~~~~k~~g~~k~~~kkk 1043 (1048)
-.....=++|. ||.+|.+.......+|.++||+.
T Consensus 55 ~d~~LDedDld-Li~EN~g~~~~r~~~KfkRLkr~ 88 (92)
T PF14632_consen 55 EDDRLDEDDLD-LIEENLGVKVRRKKKKFKRLKRA 88 (92)
T ss_pred hhhhcCHHHHH-HHHHcCCcccccchhHHHHhhhc
Confidence 34456666665 77778777765443456666653
No 29
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=87.62 E-value=17 Score=46.98 Aligned_cols=276 Identities=17% Similarity=0.183 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhH----HHHHHHhhhcCC-CCCcchhhHHHHHHH
Q 001596 311 WYYEEFLKQRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQE----HRLLSALVNKLG-DPQNKGASNADFHLS 385 (1048)
Q Consensus 311 WyFEd~LK~~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE----~~LL~lLVNKLG-Dp~~KVASkAs~lL~ 385 (1048)
+-+.-+.+..|.--+|.|+. .|.-..+|.+||.||..++..--.+- .+.|-+++.+|| ++.|-.|-+|..++-
T Consensus 560 ~d~~~~v~~m~~~tl~rL~a--~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia 637 (1233)
T KOG1824|consen 560 FDASPYVKTMYDCTLQRLKA--TDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEITRLTAVKALTLIA 637 (1233)
T ss_pred CCCChhHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 34556778888877777765 56667999999999999987654432 456778888888 566777778776654
Q ss_pred HH---HhhCCCchHHHHHHHHHhhcCCCCCcchHHHHHHHhhhhhcccCCCchHHHHHHHHHHHHHHHHHHhhccCCCcc
Q 001596 386 NL---LADHPNMKAVVINEVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLITEAGAGDKM 462 (1048)
Q Consensus 386 ~L---L~~HP~MK~VVv~EVe~lLfRpni~~rAqYYAv~fLnQi~Ls~k~d~~~vA~~LI~iYF~lFk~lv~~~~~~~k~ 462 (1048)
.= +...|.... |+.|+-.|+-|.+- .-+...+.++|-++-.-.. .+...+++.-+.-.--++...
T Consensus 638 ~S~l~i~l~~~l~~-il~~l~~flrK~~r--~lr~~~l~a~~~L~~~~~~---~~~~~~~e~vL~el~~Lises------ 705 (1233)
T KOG1824|consen 638 MSPLDIDLSPVLTE-ILPELASFLRKNQR--ALRLATLTALDKLVKNYSD---SIPAELLEAVLVELPPLISES------ 705 (1233)
T ss_pred hccceeehhhhHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHhhhhhhHH------
Confidence 31 111222222 45566666643221 1112333444444433211 222333333222222222110
Q ss_pred ccccccCCCCcCcccccccccCCCCCcccchhhHHHHHHhhHHhhccCCCCchhhhHHHHHHHHHHHHhhccch-HHHHH
Q 001596 463 DKNSKTGNKHISTFSKKSQLKISPEPHIELDSRILSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNF-NVAVQ 541 (1048)
Q Consensus 463 ~Kk~K~~~K~~~~k~kK~~~~~~~e~~~e~~sKLLsALLtGVNRA~Py~~~d~~ddi~e~~ldtLFrI~Hs~nf-ntsIQ 541 (1048)
.-..+-+-=++|+.+-+.+|-+-. .+.+-.++++-+++.+.-+ .-++.
T Consensus 706 ---------------------------dlhvt~~a~~~L~tl~~~~ps~l~----~~~~~iL~~ii~ll~Spllqg~al~ 754 (1233)
T KOG1824|consen 706 ---------------------------DLHVTQLAVAFLTTLAIIQPSSLL----KISNPILDEIIRLLRSPLLQGGALS 754 (1233)
T ss_pred ---------------------------HHHHHHHHHHHHHHHHhcccHHHH----HHhhhhHHHHHHHhhCccccchHHH
Confidence 011344455889999999886542 3556667888777766544 44677
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHhhhcCccccCC----ccHHHH-HHHHHHHHhcCccHHHHHHHHHHHHHHHhc--CC
Q 001596 542 ALMLLDKISSKNHIVSDRFYRALYSKLLLPAAMNS----SKAEMF-IGLLHRAMKNDVNLKRVAAFSKRLLQVVLQ--QP 614 (1048)
Q Consensus 542 AL~LLfqI~s~~~~~sdRFYraLY~kLLdP~l~~S----Sk~~mf-LnLL~ksLK~D~~~~RVaAFVKRLLQval~--~p 614 (1048)
++.++||++-......-. |..|...|--|-.... .||+.| +..+--+|..- ..+..+|.+++|+|-... ..
T Consensus 755 ~~l~~f~alV~t~~~~l~-y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~-~~~~s~s~a~kl~~~~~s~~s~ 832 (1233)
T KOG1824|consen 755 ALLLFFQALVITKEPDLD-YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCA-CPQKSKSLATKLIQDLQSPKSS 832 (1233)
T ss_pred HHHHHHHHHHhcCCCCcc-HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHhCCCCc
Confidence 788889988765443333 8889887776654333 456543 33444444321 225567778888876553 23
Q ss_pred chhHHHHHHHHHHHHHhCC
Q 001596 615 PQYACGCLFLLSEVLKARP 633 (1048)
Q Consensus 615 P~facg~L~LIseLLk~~P 633 (1048)
.+...-++..+++|=++++
T Consensus 833 ~~ikvfa~LslGElgr~~~ 851 (1233)
T KOG1824|consen 833 DSIKVFALLSLGELGRRKD 851 (1233)
T ss_pred hhHHHHHHhhhhhhccCCC
Confidence 3455566667777765554
No 30
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=87.50 E-value=44 Score=40.32 Aligned_cols=107 Identities=14% Similarity=0.163 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchh-H----HHHHHHhhhcCCCCC-cchhhHHHHHHHHHHhhCC
Q 001596 319 QRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQ-E----HRLLSALVNKLGDPQ-NKGASNADFHLSNLLADHP 392 (1048)
Q Consensus 319 ~~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQ-E----~~LL~lLVNKLGDp~-~KVASkAs~lL~~LL~~HP 392 (1048)
..|..|+..|. ..-.++..+|..++..|++..|+. + ..++..|.+-|-.++ .....-|..+|..||+. +
T Consensus 101 ~~~~~fl~lL~----~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~ 175 (429)
T cd00256 101 KTWEPFFNLLN----RQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-D 175 (429)
T ss_pred cchHHHHHHHc----CCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-c
Confidence 46888887553 345689999999999999876652 1 123334444443222 22333455677777764 4
Q ss_pred CchHHHHH-----HHHHhhcCCCC-CcchHHHHHHHhhhhhcccC
Q 001596 393 NMKAVVIN-----EVDSFLFRPHL-GLRAKYHAVNFLSQIRLSHK 431 (1048)
Q Consensus 393 ~MK~VVv~-----EVe~lLfRpni-~~rAqYYAv~fLnQi~Ls~k 431 (1048)
..+.++.+ -+-.+ .|++. +...+||++..|=++.+...
T Consensus 176 ~~R~~f~~~~~v~~L~~~-L~~~~~~~Ql~Y~~ll~lWlLSF~~~ 219 (429)
T cd00256 176 EYRFAFVLADGVPTLVKL-LSNATLGFQLQYQSIFCIWLLTFNPH 219 (429)
T ss_pred hHHHHHHHccCHHHHHHH-HhhccccHHHHHHHHHHHHHHhccHH
Confidence 44444332 12222 25555 67899999988888877653
No 31
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=87.22 E-value=0.55 Score=60.36 Aligned_cols=20 Identities=15% Similarity=0.066 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhcCCCChh
Q 001596 539 AVQALMLLDKISSKNHIVSD 558 (1048)
Q Consensus 539 sIQAL~LLfqI~s~~~~~sd 558 (1048)
.-++|..=|+-..+.+..-|
T Consensus 53 Rk~tLl~e~~~~~K~~~f~D 72 (840)
T PF04147_consen 53 RKKTLLKEYQQRNKSNGFVD 72 (840)
T ss_pred HHHHHHHHHHHhcccccccc
Confidence 44555555665555554443
No 32
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=86.82 E-value=86 Score=38.39 Aligned_cols=122 Identities=14% Similarity=0.246 Sum_probs=83.1
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHhhcCchh-----HHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCchHH--
Q 001596 325 VLALEESSRDVLPVLKTKALKIVYALLTSKPEQ-----EHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAV-- 397 (1048)
Q Consensus 325 vq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQ-----E~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~V-- 397 (1048)
+..|..++..+-..+|.+++.++..+.+..|+. +..||..+++-|-+.+--|--.|.-+|.+|-..+.+.+.+
T Consensus 162 ~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~ 241 (503)
T PF10508_consen 162 LSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQ 241 (503)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHh
Confidence 556666665555678899999999999888883 3448999999999988778778999999999977776654
Q ss_pred --HHHHHHHhhcCCCCCc--chHH-HH-HHHhhhhhcccCCCchHHHHHHHHHHHHHHHHHH
Q 001596 398 --VINEVDSFLFRPHLGL--RAKY-HA-VNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLI 453 (1048)
Q Consensus 398 --Vv~EVe~lLfRpni~~--rAqY-YA-v~fLnQi~Ls~k~d~~~vA~~LI~iYF~lFk~lv 453 (1048)
|++.+..+|.+..-++ .+-| ++ |.|...+... . ...++..|..|...+.
T Consensus 242 ~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~------~~~v~~~~p~~~~~l~ 296 (503)
T PF10508_consen 242 QGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-S------PQEVLELYPAFLERLF 296 (503)
T ss_pred CCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-C------hHHHHHHHHHHHHHHH
Confidence 6667777887765554 2222 22 2444444332 1 2345666766654444
No 33
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=86.64 E-value=3.8 Score=38.09 Aligned_cols=101 Identities=20% Similarity=0.126 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhHH-----HHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCchHHH
Q 001596 324 FVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEH-----RLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVV 398 (1048)
Q Consensus 324 Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~-----~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~VV 398 (1048)
.|+.|..++.++-+.+|..|+.++..|-...|+... ..+..|++=|.|++.+|...|...|.+|....|....++
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 566677777777799999999999998887676433 556678888889999999999999999998876555443
Q ss_pred HH-----HHHHhhcCCCCCcchHHHHHHHhhhh
Q 001596 399 IN-----EVDSFLFRPHLGLRAKYHAVNFLSQI 426 (1048)
Q Consensus 399 v~-----EVe~lLfRpni~~rAqYYAv~fLnQi 426 (1048)
+. .+..+|..+ +...+.+|+.+|.++
T Consensus 88 ~~~g~l~~l~~~l~~~--~~~~~~~a~~~l~~l 118 (120)
T cd00020 88 LEAGGVPKLVNLLDSS--NEDIQKNATGALSNL 118 (120)
T ss_pred HHCCChHHHHHHHhcC--CHHHHHHHHHHHHHh
Confidence 33 333444433 345666676666654
No 34
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=86.39 E-value=3.2 Score=39.46 Aligned_cols=62 Identities=26% Similarity=0.342 Sum_probs=58.0
Q ss_pred hcCchHHHHHHHHHHHHHHhhcCc---hhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCC
Q 001596 332 SRDVLPVLKTKALKIVYALLTSKP---EQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPN 393 (1048)
Q Consensus 332 s~D~l~~~R~kal~~i~~LL~~kP---EQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~ 393 (1048)
.+||++.+|..+|..+..|+..+. ..-..+|.++..-|.|++.=|==.|+..|..|...||.
T Consensus 12 L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 12 LNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred ccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 478999999999999999999888 57789999999999999999999999999999999998
No 35
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.77 E-value=86 Score=41.58 Aligned_cols=253 Identities=15% Similarity=0.193 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchh----HHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhC-C
Q 001596 318 KQRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQ----EHRLLSALVNKLGDPQNKGASNADFHLSNLLADH-P 392 (1048)
Q Consensus 318 K~~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQ----E~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~H-P 392 (1048)
|...--+.+.|+.++.-+-+.-|..||..+..+-.+.+.+ =-++|.++.|-|-||+.+|---|...|.|+-..- |
T Consensus 343 ~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p 422 (1075)
T KOG2171|consen 343 KQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQP 422 (1075)
T ss_pred hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcH
Confidence 5666778889999999999999999999999988888773 3578899999999999877555555555543221 2
Q ss_pred Cch----HHHHHHHHHhhcCCCCCcchHHHH-HHHhhhhhcccCCCchHHHHHHHHHHHHHH-----HHHHhhccCCCcc
Q 001596 393 NMK----AVVINEVDSFLFRPHLGLRAKYHA-VNFLSQIRLSHKGDGPKVAKRLIDVYFALF-----KVLITEAGAGDKM 462 (1048)
Q Consensus 393 ~MK----~VVv~EVe~lLfRpni~~rAqYYA-v~fLnQi~Ls~k~d~~~vA~~LI~iYF~lF-----k~lv~~~~~~~k~ 462 (1048)
.+. ..|.-.+...+-.+. +.|.+-|| .+.+|=.. +..+..|.=|+..+ ..+..+
T Consensus 423 ~iqk~~~e~l~~aL~~~ld~~~-~~rV~ahAa~al~nf~E--------~~~~~~l~pYLd~lm~~~l~~L~~~------- 486 (1075)
T KOG2171|consen 423 EIQKKHHERLPPALIALLDSTQ-NVRVQAHAAAALVNFSE--------ECDKSILEPYLDGLMEKKLLLLLQS------- 486 (1075)
T ss_pred HHHHHHHHhccHHHHHHhcccC-chHHHHHHHHHHHHHHH--------hCcHHHHHHHHHHHHHHHHHHHhcC-------
Confidence 221 123333344444444 34555444 44444332 23455566666543 333321
Q ss_pred ccccccCCCCcCcccccccccCCCCCcccchhhHHHHHHhhHHhhccCCCCchhhhHHHHHHHHHHHHhhccc---h---
Q 001596 463 DKNSKTGNKHISTFSKKSQLKISPEPHIELDSRILSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKN---F--- 536 (1048)
Q Consensus 463 ~Kk~K~~~K~~~~k~kK~~~~~~~e~~~e~~sKLLsALLtGVNRA~Py~~~d~~ddi~e~~ldtLFrI~Hs~n---f--- 536 (1048)
....+...++|.|.-+.--+... |-..++..|+.|..+.|+++ +
T Consensus 487 -----------------------------~~~~v~e~vvtaIasvA~AA~~~-F~pY~d~~Mp~L~~~L~n~~~~d~r~L 536 (1075)
T KOG2171|consen 487 -----------------------------SKPYVQEQAVTAIASVADAAQEK-FIPYFDRLMPLLKNFLQNADDKDLREL 536 (1075)
T ss_pred -----------------------------CchhHHHHHHHHHHHHHHHHhhh-hHhHHHHHHHHHHHHHhCCCchhhHHH
Confidence 01344556666655444333332 34566777888999988876 1
Q ss_pred -HHHHHHHHHHHHHHhcCCCChhHHHHHHHhhhcCccccCCccHHHHHHHHHHH---HhcCccHH--HHHHHHHHHHHHH
Q 001596 537 -NVAVQALMLLDKISSKNHIVSDRFYRALYSKLLLPAAMNSSKAEMFIGLLHRA---MKNDVNLK--RVAAFSKRLLQVV 610 (1048)
Q Consensus 537 -ntsIQAL~LLfqI~s~~~~~sdRFYraLY~kLLdP~l~~SSk~~mfLnLL~ks---LK~D~~~~--RVaAFVKRLLQva 610 (1048)
..++.|+.|+=.- +-..+|+-. ...+++|++.. ...|-... -..+|+=||..+-
T Consensus 537 rgktmEcisli~~A-----VGke~F~~~---------------a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~il 596 (1075)
T KOG2171|consen 537 RGKTMECLSLIARA-----VGKEKFLPL---------------AEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRIL 596 (1075)
T ss_pred HhhHHHHHHHHHHH-----hhhhhhhHh---------------HHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHh
Confidence 2346777766332 234566542 23555666655 33333333 3778999998887
Q ss_pred hcCCchhHHHHHHHHHHHHHhCCccc
Q 001596 611 LQQPPQYACGCLFLLSEVLKARPPLW 636 (1048)
Q Consensus 611 l~~pP~facg~L~LIseLLk~~P~L~ 636 (1048)
--.-.+|.--++..+-.-....|..+
T Consensus 597 g~~F~p~L~~Vmppl~~ta~~~p~~~ 622 (1075)
T KOG2171|consen 597 GDDFAPFLPVVMPPLLKTARLDPDVA 622 (1075)
T ss_pred chhhHhHHHHHhHHHHHhhccCCccc
Confidence 55444554444444444455577664
No 36
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=85.72 E-value=35 Score=38.32 Aligned_cols=101 Identities=24% Similarity=0.283 Sum_probs=64.8
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHhhcCc-----hhH-HHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCchHHH
Q 001596 325 VLALEESSRDVLPVLKTKALKIVYALLTSKP-----EQE-HRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVV 398 (1048)
Q Consensus 325 vq~Le~ls~D~l~~~R~kal~~i~~LL~~kP-----EQE-~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~VV 398 (1048)
|+.|...+.++-+.+|.+|+.++...|..-| ++| ..|+.-..+||.|...-. -|..-|..|+ .+++.....
T Consensus 1 V~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~--~~l~gl~~L~-~~~~~~~~~ 77 (262)
T PF14500_consen 1 VQSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQ--PALKGLLALV-KMKNFSPES 77 (262)
T ss_pred CcchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHH--HHHHHHHHHH-hCcCCChhh
Confidence 4667788888899999999999999999988 344 677788899997766532 3356667777 444443333
Q ss_pred HHHHHHhhcC----CCCCcchHHHHHHHhhhhhc
Q 001596 399 INEVDSFLFR----PHLGLRAKYHAVNFLSQIRL 428 (1048)
Q Consensus 399 v~EVe~lLfR----pni~~rAqYYAv~fLnQi~L 428 (1048)
+..|.+-+|. +...+..+|.+...|.-+.-
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~ 111 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLE 111 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHH
Confidence 4444433332 12233444555555555543
No 37
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=83.54 E-value=1.2 Score=49.37 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=12.7
Q ss_pred CCCccCcHHH----HHHHHHHhCC
Q 001596 794 NPLSDLTLTA----FLDKFMEKKP 813 (1048)
Q Consensus 794 dPL~DfTL~~----FLDRFvyknP 813 (1048)
|-|..+|-.+ |-|--|.|+.
T Consensus 178 NrlGq~sCLRCK~cfCddHvrrKg 201 (314)
T PF06524_consen 178 NRLGQYSCLRCKICFCDDHVRRKG 201 (314)
T ss_pred ccccchhhhheeeeehhhhhhhcc
Confidence 4566666544 7777777764
No 38
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=83.41 E-value=73 Score=37.15 Aligned_cols=172 Identities=17% Similarity=0.181 Sum_probs=91.1
Q ss_pred cchHHHHHHHhhhhhcccCCCchHHHHHHHHHHHHHHHHHHhhccCCCccccccccCCCCcCcccccccccCCCCCcccc
Q 001596 413 LRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLITEAGAGDKMDKNSKTGNKHISTFSKKSQLKISPEPHIEL 492 (1048)
Q Consensus 413 ~rAqYYAv~fLnQi~Ls~k~d~~~vA~~LI~iYF~lFk~lv~~~~~~~k~~Kk~K~~~K~~~~k~kK~~~~~~~e~~~e~ 492 (1048)
..-|||.+..+=|+.+++ .+| ++|+-||.+|+.+++--.. .. .+.
T Consensus 207 ~qlQY~SL~~iw~lTf~~-----~~a-qdi~K~~dli~dli~iVk~-----------------~~------------keK 251 (432)
T COG5231 207 KQLQYNSLIIIWILTFSK-----ECA-QDIDKMDDLINDLIAIVKE-----------------RA------------KEK 251 (432)
T ss_pred hhhHHHHHHHHHHHhcCH-----HHH-HHHHHHHHHHHHHHHHHHH-----------------HH------------HHH
Confidence 467899999999998864 466 8999999999877752100 00 122
Q ss_pred hhhHHHHHHhhHHhhccCCCCchhhhHHHHHHHHHHHHhhccchHHHHHHHH--------HH------HHHHh---cCCC
Q 001596 493 DSRILSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNFNVAVQALM--------LL------DKISS---KNHI 555 (1048)
Q Consensus 493 ~sKLLsALLtGVNRA~Py~~~d~~ddi~e~~ldtLFrI~Hs~nfntsIQAL~--------LL------fqI~s---~~~~ 555 (1048)
-+||.-+|+.-+-- + .|-+++|.+.-..+..-++|.|. |. -.++. ++=.
T Consensus 252 V~Rlc~~Iv~n~~d-----K---------~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~ 317 (432)
T COG5231 252 VLRLCCGIVANVLD-----K---------SPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLC 317 (432)
T ss_pred HHHHHHHHHHHHhc-----c---------cccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhh
Confidence 35555454443311 1 12234444444444555555553 11 11111 0112
Q ss_pred ChhHHHHHHHhhhcCccccCCccHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHhCCc
Q 001596 556 VSDRFYRALYSKLLLPAAMNSSKAEMFIGLLHRAMKNDVNLKRVAAFSKRLLQVVLQQPPQ-YACGCLFLLSEVLKARPP 634 (1048)
Q Consensus 556 ~sdRFYraLY~kLLdP~l~~SSk~~mfLnLL~ksLK~D~~~~RVaAFVKRLLQval~~pP~-facg~L~LIseLLk~~P~ 634 (1048)
.-|-|-.-|...+|.-.-.+.++ =|-.-=...++.| -.+.+|-|.-+.-+..|+ .+|-++-=|.++.+..|.
T Consensus 318 ~fD~Y~~ELdsg~l~wSp~H~~~--dFWs~N~d~l~kd-----ny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE 390 (432)
T COG5231 318 IFDNYLNELDSGRLEWSPYHHKK--DFWSTNLDMLIKD-----NYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE 390 (432)
T ss_pred HHHHHHHHHhhCcccCCCccccc--CchhhhHHHHhhh-----hHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch
Confidence 33455555665555432222222 1111001111111 134555555555555665 788888889999999999
Q ss_pred cccccc
Q 001596 635 LWNMVL 640 (1048)
Q Consensus 635 L~~ll~ 640 (1048)
...+|.
T Consensus 391 ~~~vl~ 396 (432)
T COG5231 391 INAVLS 396 (432)
T ss_pred HHHHHH
Confidence 877764
No 39
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.28 E-value=1.8e+02 Score=39.05 Aligned_cols=96 Identities=14% Similarity=0.144 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCC-----chHHHHHHHH----------hhchHHHHHHHHHHHH--hhChhhhHH
Q 001596 186 KYVERKRELGERLLWQYVSDYEGSRGQT-----GDIKMLAATQ----------RSGTAADKVSAFSVIV--GDNPMANLR 248 (1048)
Q Consensus 186 ~~v~~~~~~a~~ll~~~~~~y~~~~~~~-----Sd~kwl~ti~----------~sGTlsDKIaAltllV--QesPvhnl~ 248 (1048)
.-++-.-+.|+..|.-....|.+...+. +-..||.+|. =.|-|.|.+..++.-- --.+.-.+.
T Consensus 556 e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~s 635 (1176)
T KOG1248|consen 556 ENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLS 635 (1176)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHH
Confidence 4466666778888888888887654332 3468999987 2366777777776655 445666677
Q ss_pred HHHHHHHhhhccCChhHHHHHHHHHHHHHhcCCCC
Q 001596 249 SLDALLGMVSSKVGKRHALTGFEALKELFVSSLLP 283 (1048)
Q Consensus 249 ~L~~Ll~m~~~K~srr~al~Al~aLkdLF~~~LLP 283 (1048)
.|+-++.|+. .--...+.++.++..+|.+.-.+
T Consensus 636 lLdl~~~~a~--~~~e~~vs~l~~v~~~~e~~~~~ 668 (1176)
T KOG1248|consen 636 LLDLLIALAP--VQTESQVSKLFTVDPEFENSSST 668 (1176)
T ss_pred HHHHHHhhhc--cccchhHHHHHHhhHHhhccccH
Confidence 7777777753 12233456666777777655444
No 40
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=82.37 E-value=19 Score=46.50 Aligned_cols=192 Identities=11% Similarity=0.166 Sum_probs=120.8
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchh---HHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhC----CCch
Q 001596 323 RFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQ---EHRLLSALVNKLGDPQNKGASNADFHLSNLLADH----PNMK 395 (1048)
Q Consensus 323 ~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQ---E~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~H----P~MK 395 (1048)
.-|-+|..+|+|+...+|++++..+.+|+..+|-. ...-|..||.-+.|.+.-|-++|..+|.++|..| .+..
T Consensus 616 ~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p~~~~~~dla 695 (1529)
T KOG0413|consen 616 VVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTPLLENSSDLA 695 (1529)
T ss_pred hHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhcccCCchH
Confidence 34778999999999999999999999999999962 3555677888888999999999999888888764 4567
Q ss_pred HHHHHHHHHhhcCCCCCcchHH-------------HHHHHhhhhhcccCCCchHHHHHHHHHHHHHHHHHHhhccCCCcc
Q 001596 396 AVVINEVDSFLFRPHLGLRAKY-------------HAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLITEAGAGDKM 462 (1048)
Q Consensus 396 ~VVv~EVe~lLfRpni~~rAqY-------------YAv~fLnQi~Ls~k~d~~~vA~~LI~iYF~lFk~lv~~~~~~~k~ 462 (1048)
+....+|+..+- +.|| .-..+++.+.- |.+. ..+--.|..|-+.|+.....+=
T Consensus 696 W~LL~~i~~~~~------~s~yl~~~~h~w~~~~k~~~t~~d~~~~-hsG~-----E~~~~aWm~~s~~~~q~~~~d~-- 761 (1529)
T KOG0413|consen 696 WTLLDTIESVTN------HSQYLMSTLHDWVREKKVKRTVMDSMKQ-HSGS-----EKLDGAWMVFSQLCVQFEQVDF-- 761 (1529)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHhcchhhhhhhhc-ccCc-----ccCcchHHHHHHHHhcccccce--
Confidence 778888876652 4444 23345544432 2221 2233334443344443221000
Q ss_pred ccccccCCCCcCcccccccccCCCC-CcccchhhHHHHHHhhHHhhccCCCCchhhhHHHHHHHHHHHHhhccchHHHHH
Q 001596 463 DKNSKTGNKHISTFSKKSQLKISPE-PHIELDSRILSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNFNVAVQ 541 (1048)
Q Consensus 463 ~Kk~K~~~K~~~~k~kK~~~~~~~e-~~~e~~sKLLsALLtGVNRA~Py~~~d~~ddi~e~~ldtLFrI~Hs~nfntsIQ 541 (1048)
+.. ...... .-..-.+.+|.-|+.-|.++--.... +.++.|.+++-.++-...|.++..
T Consensus 762 --------------S~~--~~s~~~~s~~~N~~~~L~hI~~~i~~i~~~l~s----~~vd~~~~a~K~~Ck~~~~~~s~e 821 (1529)
T KOG0413|consen 762 --------------SIE--TFSRVDLSRESNLVQYLIHIIENIKKIDDDLKS----DLVDTLQGAFKDYCKHPSSRSSYE 821 (1529)
T ss_pred --------------eee--cccccccchhhhHHHHHHHHHHHHHhhhhcccH----HHHHHHHHHHHHHHcCCccccHHH
Confidence 000 000000 00112455777777766655444443 467777888776776666899999
Q ss_pred HHHHHHH
Q 001596 542 ALMLLDK 548 (1048)
Q Consensus 542 AL~LLfq 548 (1048)
|++++-.
T Consensus 822 ~~~~~~d 828 (1529)
T KOG0413|consen 822 CLGKLMD 828 (1529)
T ss_pred HHHHHHH
Confidence 9987643
No 41
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=81.80 E-value=0.95 Score=54.35 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=10.0
Q ss_pred ccchhhHHHHHHhhHHhh
Q 001596 490 IELDSRILSALLMGVNRA 507 (1048)
Q Consensus 490 ~e~~sKLLsALLtGVNRA 507 (1048)
-|+.--=++.+|+|=|-+
T Consensus 129 FEIP~s~Vsn~l~gKNEv 146 (615)
T KOG0526|consen 129 FEIPLSDVSNTLTGKNEV 146 (615)
T ss_pred EEeehhhhhhhhcCCceE
Confidence 344434455568886655
No 42
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=81.71 E-value=3.4 Score=51.23 Aligned_cols=78 Identities=28% Similarity=0.344 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHH---HHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCC
Q 001596 317 LKQRYERFVLALEESSRDVLPVLKTKALKI---VYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPN 393 (1048)
Q Consensus 317 LK~~Y~~Fvq~Le~ls~D~l~~~R~kal~~---i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~ 393 (1048)
.|+.....+..|++-..|+-++.|.|||.. +|+|=..-|-..+...++.+..|-|+..-|--+|+.++.+||-+||-
T Consensus 340 ~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF 419 (1128)
T COG5098 340 YKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPF 419 (1128)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCh
Confidence 455667777788888899999999999864 55665666778899999999999999999999999999999999995
Q ss_pred c
Q 001596 394 M 394 (1048)
Q Consensus 394 M 394 (1048)
-
T Consensus 420 ~ 420 (1128)
T COG5098 420 A 420 (1128)
T ss_pred h
Confidence 3
No 43
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=81.64 E-value=13 Score=38.90 Aligned_cols=108 Identities=17% Similarity=0.193 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCC-CchHHHHHHHHHhhcCCCCCcch
Q 001596 337 PVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHP-NMKAVVINEVDSFLFRPHLGLRA 415 (1048)
Q Consensus 337 ~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP-~MK~VVv~EVe~lLfRpni~~rA 415 (1048)
+.+|..++.++.+|....|..=...+..+.+.|-|++.-|-..|..+|..|+.... -+++.+...+-..|--+ +...
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~--~~~I 79 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDE--NPEI 79 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCC--CHHH
Confidence 47899999999999999998777888899999999999999999999999998753 23555656666677544 4567
Q ss_pred HHHHHHHhhhhhcccCCCchHHHHHHHHHHHHH
Q 001596 416 KYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFAL 448 (1048)
Q Consensus 416 qYYAv~fLnQi~Ls~k~d~~~vA~~LI~iYF~l 448 (1048)
+=.|..||.++...+.. .-+.+.++++-+.|
T Consensus 80 r~~A~~~~~e~~~~~~~--~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 80 RSLARSFFSELLKKRNP--NIIYNNFPELISSL 110 (178)
T ss_pred HHHHHHHHHHHHHhccc--hHHHHHHHHHHHHH
Confidence 78899999999877532 13555555554443
No 44
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=79.48 E-value=10 Score=46.93 Aligned_cols=118 Identities=22% Similarity=0.233 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccccccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhcCch--HHHHHHH
Q 001596 266 ALTGFEALKELFVSSLLPDRKLKTLVQRPLDNLPETKDGYSLLLFWYYEEFLKQRYERFVLALEESSRDVL--PVLKTKA 343 (1048)
Q Consensus 266 al~Al~aLkdLF~~~LLPdRKLr~f~qqPl~~l~~~k~~~~~L~lWyFEd~LK~~Y~~Fvq~Le~ls~D~l--~~~R~ka 343 (1048)
+......|..+|.+.|||-+|-++ -..+++|+=..=-.+...|+..|-..+-+|- ..+|..|
T Consensus 305 ~~~lf~~Ll~~F~~~ILpT~~sr~----------------vQFl~Fy~~s~~~~~~~~Fl~~L~~~~~~~~~~~~~R~~A 368 (563)
T PF05327_consen 305 ADSLFNTLLSIFESHILPTHKSRH----------------VQFLLFYFCSLDPELADAFLSFLWKIAFDPNQPPVTRQAA 368 (563)
T ss_dssp HHHHHHHHHHHHHHTCCCC-S-SS----------------TTHHHHHHHTTSHHHHHHHHHHHHHHHH-SSS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCccch----------------HHHHHHHHHHcCchHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 556889999999999999776543 1345555544334556689999877766653 6679999
Q ss_pred HHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCchHHHHHHHHHhh-cCCCCCcchHHHHHH
Q 001596 344 LKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVVINEVDSFL-FRPHLGLRAKYHAVN 421 (1048)
Q Consensus 344 l~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~VVv~EVe~lL-fRpni~~rAqYYAv~ 421 (1048)
+.++..+|..---=- ..+...+..+|...+..+ +.+.+.-. -.|++..|+.|||+|
T Consensus 369 ~~YlaSflaRAk~v~---------------~~~v~~~l~~L~~w~~~y-------~~~~~~~~~~~~~~~~h~~FYs~~ 425 (563)
T PF05327_consen 369 AAYLASFLARAKFVP---------------LSTVRSVLSYLCDWLHDY-------IDEQESSSNAGPDLKRHGVFYSVC 425 (563)
T ss_dssp HHHHHHHHHHBTT-----------------HHHHHHHHHHHHHHHHHH-------HHHHGGGTTSSS-GGGGHHHHHHH
T ss_pred HHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHHHHHH-------HHHhccccccCCChhhhhhHHHHH
Confidence 999999996542111 112223344555554433 33444444 567778889999987
No 45
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=78.45 E-value=57 Score=34.75 Aligned_cols=75 Identities=15% Similarity=0.091 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCC
Q 001596 318 KQRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHP 392 (1048)
Q Consensus 318 K~~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP 392 (1048)
..+...|+..|-..+.++-..++..|..++..+...-+--...++.++..-+.+++.++-..+..+|..++..+|
T Consensus 89 ~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 89 EPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 344667888898999999999999999999999998872233458888888889999999999999999999998
No 46
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=77.43 E-value=2.9 Score=49.91 Aligned_cols=11 Identities=0% Similarity=-0.182 Sum_probs=6.4
Q ss_pred hHHHHHHHHhh
Q 001596 853 DLVFHKFYMNK 863 (1048)
Q Consensus 853 e~FFh~yf~~k 863 (1048)
.-+|+.++-..
T Consensus 138 ~~~~~~~lg~~ 148 (432)
T PF09073_consen 138 EEGLRQVLGIP 148 (432)
T ss_pred HHHHHHHhCCC
Confidence 45667766543
No 47
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=75.72 E-value=3.9 Score=45.50 Aligned_cols=8 Identities=0% Similarity=-0.504 Sum_probs=3.3
Q ss_pred HHHHhhhh
Q 001596 906 EEIDNMLD 913 (1048)
Q Consensus 906 eE~~~~ld 913 (1048)
..+|..+.
T Consensus 250 ~~y~~~~~ 257 (314)
T PF06524_consen 250 GSYWKNGG 257 (314)
T ss_pred cchhcccc
Confidence 34444433
No 48
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=75.60 E-value=58 Score=34.87 Aligned_cols=134 Identities=23% Similarity=0.307 Sum_probs=88.0
Q ss_pred hHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCCCcchHHHHHHHhhhhhcccCCCchH
Q 001596 357 QEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVVINEVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKGDGPK 436 (1048)
Q Consensus 357 QE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~VVv~EVe~lLfRpni~~rAqYYAv~fLnQi~Ls~k~d~~~ 436 (1048)
+...||..+.+ ||+.|+-..|...|..||... |..+... +.-- .+ +.-| +.|+ ..
T Consensus 40 ~~~sLlt~il~---Dp~~kvR~aA~~~l~~lL~gs---k~~L~~A-e~~~-~~----~~sF--------tslS-----~t 94 (182)
T PF13251_consen 40 ATPSLLTCILK---DPSPKVRAAAASALAALLEGS---KPFLAQA-EESK-GP----SGSF--------TSLS-----ST 94 (182)
T ss_pred CCcchhHHHHc---CCchhHHHHHHHHHHHHHHcc---HHHHHHH-HhcC-CC----CCCc--------ccHH-----HH
Confidence 45778888866 999999988998998888863 4432221 1000 11 1112 1112 25
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCccccccccCCCCcCcccccccccCCCCCcccchhhHHHHHHhh---HHhhccCCCC
Q 001596 437 VAKRLIDVYFALFKVLITEAGAGDKMDKNSKTGNKHISTFSKKSQLKISPEPHIELDSRILSALLMG---VNRAFPYVSS 513 (1048)
Q Consensus 437 vA~~LI~iYF~lFk~lv~~~~~~~k~~Kk~K~~~K~~~~k~kK~~~~~~~e~~~e~~sKLLsALLtG---VNRA~Py~~~ 513 (1048)
++.-+..+|.+|...+.. |.+..++..+|.+ +--+.||...
T Consensus 95 La~~i~~lH~~Ll~~L~~------------------------------------E~~~~~l~q~lK~la~Lv~~tPY~rL 138 (182)
T PF13251_consen 95 LASMIMELHRGLLLALQA------------------------------------EKSPPVLTQLLKCLAVLVQATPYHRL 138 (182)
T ss_pred HHHHHHHHHHHHHHHHhc------------------------------------ccccHHHHHHHHHHHHHHccCChhhc
Confidence 788899999998876653 2234455555554 4567899998
Q ss_pred chhhhHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhcC
Q 001596 514 NEADDIIEVQTPMLFKLVHSKNFNVAVQALMLLDKISSKN 553 (1048)
Q Consensus 514 d~~ddi~e~~ldtLFrI~Hs~nfntsIQAL~LLfqI~s~~ 553 (1048)
. .+++...+..+..+....+-++.+.+|..+=.|.+..
T Consensus 139 ~--~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 139 P--PGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred C--HhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 7 4677777777776665577888899988887776654
No 49
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=74.71 E-value=11 Score=49.49 Aligned_cols=83 Identities=27% Similarity=0.321 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcC--ch-hHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhh
Q 001596 314 EEFLKQRYERFVLALEESSRDVLPVLKTKALKIVYALLTSK--PE-QEHRLLSALVNKLGDPQNKGASNADFHLSNLLAD 390 (1048)
Q Consensus 314 Ed~LK~~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~k--PE-QE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~ 390 (1048)
|...|..=..|+.+|.+-++|.-.++|.++|.+...|...+ |. .-+..++++|-.|-|.+.=|.-.|.++|..+|..
T Consensus 350 ~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~ 429 (1251)
T KOG0414|consen 350 EEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDR 429 (1251)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhc
Confidence 44677777789999999999999999999999988877544 44 4578999999999999999999999999999999
Q ss_pred CCCchH
Q 001596 391 HPNMKA 396 (1048)
Q Consensus 391 HP~MK~ 396 (1048)
||--..
T Consensus 430 ~Pfs~~ 435 (1251)
T KOG0414|consen 430 HPFSSE 435 (1251)
T ss_pred CCchhh
Confidence 997643
No 50
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.47 E-value=2.3e+02 Score=36.35 Aligned_cols=126 Identities=14% Similarity=0.072 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCchHHHHHH
Q 001596 322 ERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVVINE 401 (1048)
Q Consensus 322 ~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~VVv~E 401 (1048)
.-.||.|-.++-|.-+++|=-+|-+++.+|+.+|-.=+.-..+++.=|.|.+-.|-.+|..||..++.+. |...||-.-
T Consensus 298 qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskk-Nl~eIVk~L 376 (877)
T KOG1059|consen 298 QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKK-NLMEIVKTL 376 (877)
T ss_pred HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhh-hHHHHHHHH
Confidence 3467888889999999999999999999999999966666777777788889999999999999988765 444443332
Q ss_pred HHHhhcCCCCCcchHHHHHHHhhhhhcccCCCchHHHHHHHHHHHHHHHHHHh
Q 001596 402 VDSFLFRPHLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLIT 454 (1048)
Q Consensus 402 Ve~lLfRpni~~rAqYYAv~fLnQi~Ls~k~d~~~vA~~LI~iYF~lFk~lv~ 454 (1048)
...++-- ...-|..-+|+-|+---..+.+.. -.=.+.|+++.-.+..
T Consensus 377 M~~~~~a-----e~t~yrdell~~II~iCS~snY~~-ItdFEWYlsVlveLa~ 423 (877)
T KOG1059|consen 377 MKHVEKA-----EGTNYRDELLTRIISICSQSNYQY-ITDFEWYLSVLVELAR 423 (877)
T ss_pred HHHHHhc-----cchhHHHHHHHHHHHHhhhhhhhh-hhhHHHHHHHHHHHHh
Confidence 2222211 113566666666653211111110 1235677777655543
No 51
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=72.50 E-value=9.2 Score=40.52 Aligned_cols=72 Identities=18% Similarity=0.240 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHhhc---CchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCchH
Q 001596 322 ERFVLALEESSRDVLPVLKTKALKIVYALLTS---KPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKA 396 (1048)
Q Consensus 322 ~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~---kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~ 396 (1048)
++|+..+-+++-.+-..+|..|+.++.-.|.. +|- ..+..||-=.+||+..|+++|..+|..|-.+||.|-.
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~---~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK---QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH---HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 45666666688888889999999999988854 453 3566777778999999999999999999999998854
No 52
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=72.29 E-value=26 Score=35.11 Aligned_cols=98 Identities=13% Similarity=0.067 Sum_probs=69.5
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCC-chHHHHH-----
Q 001596 327 ALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPN-MKAVVIN----- 400 (1048)
Q Consensus 327 ~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~-MK~VVv~----- 400 (1048)
.++++....+..---.++--+++++...+..-...++.|-.+|..++..++-.|..+|..++..-.. +..-|+.
T Consensus 4 ~I~kATs~~~~~~D~~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~ 83 (133)
T cd03561 4 LIERATSPSLEEPDWALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLL 83 (133)
T ss_pred HHHHHcCcccCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHH
Confidence 3555555544444456677899999999988899999999999999999999999999999988654 5554554
Q ss_pred HHHHhhcCC-CCCcchHHHHHHHhh
Q 001596 401 EVDSFLFRP-HLGLRAKYHAVNFLS 424 (1048)
Q Consensus 401 EVe~lLfRp-ni~~rAqYYAv~fLn 424 (1048)
++..++..+ +.....+--++.+|-
T Consensus 84 ~l~~l~~~~~~~~~~Vk~kil~ll~ 108 (133)
T cd03561 84 ELVKIAKNSPKYDPKVREKALELIL 108 (133)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 455555544 444444444444443
No 53
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=71.35 E-value=9 Score=43.51 Aligned_cols=116 Identities=23% Similarity=0.300 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhHHH--------HHHHhhhcCCCCCcchhhHHHHHHHHHHhhC
Q 001596 320 RYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHR--------LLSALVNKLGDPQNKGASNADFHLSNLLADH 391 (1048)
Q Consensus 320 ~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~~--------LL~lLVNKLGDp~~KVASkAs~lL~~LL~~H 391 (1048)
.|..|+..|. -+-.++..+|+.++..|++..|.+... ++..|-+.+..++..+..-|..+|..||+ +
T Consensus 106 ~~~~fl~ll~----~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~ 180 (312)
T PF03224_consen 106 PYSPFLKLLD----RNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-S 180 (312)
T ss_dssp -HHHHHHH-S-----SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-S
T ss_pred hHHHHHHHhc----CCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-c
Confidence 5777777444 335699999999999999998886654 55555565555555566778888988884 5
Q ss_pred CCchHHHHH-----HHHHhh-----cCCCCCcchHHHHHHHhhhhhcccCCCchHHHHHHHHHH
Q 001596 392 PNMKAVVIN-----EVDSFL-----FRPHLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVY 445 (1048)
Q Consensus 392 P~MK~VVv~-----EVe~lL-----fRpni~~rAqYYAv~fLnQi~Ls~k~d~~~vA~~LI~iY 445 (1048)
+..+.++.+ .+-.+| ...+.+..-+||++..|=++.+.. +++..+..-|
T Consensus 181 ~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~-----~~~~~~~~~~ 239 (312)
T PF03224_consen 181 KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEP-----EIAEELNKKY 239 (312)
T ss_dssp HHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSH-----HHHHHHHTTS
T ss_pred chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCH-----HHHHHHhccc
Confidence 555555433 333444 245667788999999998887763 5666666665
No 54
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=69.08 E-value=2.6e+02 Score=37.27 Aligned_cols=65 Identities=18% Similarity=0.147 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhcC--chhH-HHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCchHHHHHHHH
Q 001596 339 LKTKALKIVYALLTSK--PEQE-HRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVVINEVD 403 (1048)
Q Consensus 339 ~R~kal~~i~~LL~~k--PEQE-~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~VVv~EVe 403 (1048)
.|.+.+++|.+|.+-+ |-.+ -.+|++++|-+-.++--||+-..-.-..-|..||.-+.-+-.-++
T Consensus 521 tk~~~VrfIsEL~KF~lv~~~~if~cLk~ll~dF~~hnIEm~c~lLE~~GrfLlr~pEt~lrM~~~Le 588 (1128)
T KOG2051|consen 521 TKLKIVRFISELCKFQLVPKFEIFSCLKMLLNDFTHHNIEMACVLLESCGRFLLRSPETKLRMRVFLE 588 (1128)
T ss_pred hhhhhhhhHHhhhhhCccChHHHHHHHHHHHHhcccccHHHHHHHHHhcchhhhcChhHHHHHHHHHH
Confidence 3455677777776433 3333 456777777666666555555444444555556655544433333
No 55
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.11 E-value=4.8e+02 Score=36.34 Aligned_cols=219 Identities=15% Similarity=0.195 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhH--H---HHHHHhhhcCCCCC---cchhhHHHHHHHHHHhh
Q 001596 319 QRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQE--H---RLLSALVNKLGDPQ---NKGASNADFHLSNLLAD 390 (1048)
Q Consensus 319 ~~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE--~---~LL~lLVNKLGDp~---~KVASkAs~lL~~LL~~ 390 (1048)
.+|.++++-|-..+-+-.+.+|+.+.-.+.+||.++|--+ . .|...+-.-.-|.- |..|.+|...|.+|+..
T Consensus 1035 ~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr 1114 (1702)
T KOG0915|consen 1035 EYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVR 1114 (1702)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666777777888899999999999999999987522 1 22333333333333 77888888888888765
Q ss_pred -----CCCchHHHHHHHHHhhcCCCCCcc---hHHHHHHHhhhhhcccCCCchHHH---HHHHHHHHHHHH----HHHh-
Q 001596 391 -----HPNMKAVVINEVDSFLFRPHLGLR---AKYHAVNFLSQIRLSHKGDGPKVA---KRLIDVYFALFK----VLIT- 454 (1048)
Q Consensus 391 -----HP~MK~VVv~EVe~lLfRpni~~r---AqYYAv~fLnQi~Ls~k~d~~~vA---~~LI~iYF~lFk----~lv~- 454 (1048)
||.--.-+..-|=-||.-+++... .+-.+|.+|--++-+... .+. ++||=.+...|- ..+.
T Consensus 1115 ~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~---~lkP~~~~LIp~ll~~~s~lE~~vLnY 1191 (1702)
T KOG0915|consen 1115 ICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGK---ELKPHFPKLIPLLLNAYSELEPQVLNY 1191 (1702)
T ss_pred hcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchh---hhcchhhHHHHHHHHHccccchHHHHH
Confidence 443333456666678888887633 346788888888765432 222 223333322221 0000
Q ss_pred --hccCCCccccccccCCCCcCcccccccccCCCCCcccchhhHHHHHHhhHHhhccCCCCchhhhHHHHHHHHHHHHhh
Q 001596 455 --EAGAGDKMDKNSKTGNKHISTFSKKSQLKISPEPHIELDSRILSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVH 532 (1048)
Q Consensus 455 --~~~~~~k~~Kk~K~~~K~~~~k~kK~~~~~~~e~~~e~~sKLLsALLtGVNRA~Py~~~d~~ddi~e~~ldtLFrI~H 532 (1048)
...-++. +. + ... .-......|. +.+-||...+|+... ++++.++.|-.++.
T Consensus 1192 ls~r~~~~e--~e------------a---lDt-~R~s~akssp----mmeTi~~ci~~iD~~----vLeelip~l~el~R 1245 (1702)
T KOG0915|consen 1192 LSLRLINIE--TE------------A---LDT-LRASAAKSSP----MMETINKCINYIDIS----VLEELIPRLTELVR 1245 (1702)
T ss_pred HHHhhhhhH--HH------------H---HHH-HHHhhhcCCc----HHHHHHHHHHhhhHH----HHHHHHHHHHHHHh
Confidence 0000000 00 0 000 0000112344 456688889999754 77888888777765
Q ss_pred c-cchHHHHHHHHHHHHHHhcC----CCChhHHHHHHHh
Q 001596 533 S-KNFNVAVQALMLLDKISSKN----HIVSDRFYRALYS 566 (1048)
Q Consensus 533 s-~nfntsIQAL~LLfqI~s~~----~~~sdRFYraLY~ 566 (1048)
. ++.+|.+=|-..|-+|.... .--+.-+.|+|+-
T Consensus 1246 ~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~ 1284 (1702)
T KOG0915|consen 1246 GSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFP 1284 (1702)
T ss_pred ccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhh
Confidence 4 56777666666555555443 3334555555554
No 56
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=66.60 E-value=15 Score=33.95 Aligned_cols=66 Identities=23% Similarity=0.100 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhH-----HHHHHHhhhcCCCCCcchhhHHHHHHHHHH
Q 001596 323 RFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQE-----HRLLSALVNKLGDPQNKGASNADFHLSNLL 388 (1048)
Q Consensus 323 ~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE-----~~LL~lLVNKLGDp~~KVASkAs~lL~~LL 388 (1048)
.++..|..+..++-+.++..|+.+++.|....|+.. ..++..|+.-|++++..+...|.+.|..|.
T Consensus 49 ~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 49 GGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred CChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 566677777777888999999999999998876632 236888999999998888888888887764
No 57
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=66.43 E-value=53 Score=35.00 Aligned_cols=107 Identities=16% Similarity=0.173 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHhhcC-chhH---HHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCchHHH
Q 001596 323 RFVLALEESSRDVLPVLKTKALKIVYALLTSK-PEQE---HRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVV 398 (1048)
Q Consensus 323 ~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~k-PEQE---~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~VV 398 (1048)
.++..|.....|.=..+-..|+.++-.|...- .+.+ ..++..|+.++||+..-|+..|...|..+.+.-+....++
T Consensus 53 ~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~ 132 (228)
T PF12348_consen 53 QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL 132 (228)
T ss_dssp ---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH
T ss_pred HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH
Confidence 44445555555544444455555555444222 1233 6788999999999999999999999999999776233343
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHhhhhhcccC
Q 001596 399 INEVDSFLFRPHLGLRAKYHAVNFLSQIRLSHK 431 (1048)
Q Consensus 399 v~EVe~lLfRpni~~rAqYYAv~fLnQi~Ls~k 431 (1048)
...+...+- +-+...+.+++.+|..++-...
T Consensus 133 ~~~l~~~~~--~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 133 LEILSQGLK--SKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHTT---S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHh--CCCHHHHHHHHHHHHHHHHHcc
Confidence 444444443 3456788889999988877665
No 58
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=65.44 E-value=3e+02 Score=32.95 Aligned_cols=79 Identities=19% Similarity=0.252 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHhhhcCccccCCccHHHHHHHHHHHHhcCccH----HHHHHHHHHHHHHHhcCCchhH
Q 001596 543 LMLLDKISSKNHIVSDRFYRALYSKLLLPAAMNSSKAEMFIGLLHRAMKNDVNL----KRVAAFSKRLLQVVLQQPPQYA 618 (1048)
Q Consensus 543 L~LLfqI~s~~~~~sdRFYraLY~kLLdP~l~~SSk~~mfLnLL~ksLK~D~~~----~RVaAFVKRLLQval~~pP~fa 618 (1048)
..++.|+..+.......+.+.|.+. . | ...++|+.+||+.|-..|.. .+. .-+....+||.+.........|
T Consensus 239 ~~~~~~f~~kdp~l~~~~i~~llk~-W-P-~t~s~Kev~FL~el~~il~~-~~~~~f~~i~~~lf~~la~ci~S~h~qVA 314 (409)
T PF01603_consen 239 SYCVVQFLEKDPSLAEPVIKGLLKH-W-P-KTNSQKEVLFLNELEEILEV-LPPEEFQKIMVPLFKRLAKCISSPHFQVA 314 (409)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHHHHH-S---SS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHh-C-C-CCCchhHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 3455667777777788888887652 2 2 46678999999999988754 222 2234445555544333333445
Q ss_pred HHHHHHH
Q 001596 619 CGCLFLL 625 (1048)
Q Consensus 619 cg~L~LI 625 (1048)
-.+|++.
T Consensus 315 ErAl~~w 321 (409)
T PF01603_consen 315 ERALYFW 321 (409)
T ss_dssp HHHHGGG
T ss_pred HHHHHHH
Confidence 5666554
No 59
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=64.35 E-value=71 Score=33.24 Aligned_cols=136 Identities=19% Similarity=0.184 Sum_probs=74.2
Q ss_pred HHHhhHHhhccCCCCchhhhHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhcCC-----CChhHHHHHHHhhhcCccc
Q 001596 499 ALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNFNVAVQALMLLDKISSKNH-----IVSDRFYRALYSKLLLPAA 573 (1048)
Q Consensus 499 ALLtGVNRA~Py~~~d~~ddi~e~~ldtLFrI~Hs~nfntsIQAL~LLfqI~s~~~-----~~sdRFYraLY~kLLdP~l 573 (1048)
.||..+.+.-.+.+.. ....+...+.-+..+.|+.+-...--++.|+-.++.... ..+..|.+.||..|-.|.-
T Consensus 3 ~ll~~l~~~~~~~~~~-~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~ 81 (165)
T PF08167_consen 3 SLLSTLRSCGLLLSAP-SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDP 81 (165)
T ss_pred HHHHHHHccchhhccc-CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3455554443333321 012334444455566777776666667777766665431 2345667888875555432
Q ss_pred cCCccHH-HHHHHHHHHHhcCccHHH--HHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHhCCcc
Q 001596 574 MNSSKAE-MFIGLLHRAMKNDVNLKR--VAAFSKRLLQVVLQQP--PQYACGCLFLLSEVLKARPPL 635 (1048)
Q Consensus 574 ~~SSk~~-mfLnLL~ksLK~D~~~~R--VaAFVKRLLQval~~p--P~facg~L~LIseLLk~~P~L 635 (1048)
...-..+ ..|.-||..+..-+...| +.-.+..++|.++... +.....+|-.+..+++.||..
T Consensus 82 ~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 82 PSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPHHPTT 148 (165)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCcc
Confidence 2222222 234555555544444333 2334444444443332 478889999999999999976
No 60
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=64.22 E-value=76 Score=37.50 Aligned_cols=78 Identities=22% Similarity=0.118 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchh--HHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCch
Q 001596 318 KQRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQ--EHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMK 395 (1048)
Q Consensus 318 K~~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQ--E~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK 395 (1048)
+..=...+++|..++.++-+.+|.-||.++++|+-..|+- +..-++.|++-+.|+...++......|+.|+. ||..+
T Consensus 103 ~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd-~p~tR 181 (371)
T PF14664_consen 103 KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD-SPRTR 181 (371)
T ss_pred ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC-Ccchh
Confidence 3334667888888999999999999999999999999994 77778888888888776788887777777776 45554
Q ss_pred H
Q 001596 396 A 396 (1048)
Q Consensus 396 ~ 396 (1048)
.
T Consensus 182 ~ 182 (371)
T PF14664_consen 182 K 182 (371)
T ss_pred h
Confidence 4
No 61
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=64.14 E-value=4.3e+02 Score=34.36 Aligned_cols=139 Identities=17% Similarity=0.154 Sum_probs=92.9
Q ss_pred HHHHHHHHhhChhhhHHHHHHHHHh---hhccCChhHHHHHHHHHHHHHhcCCCCCCcccccccCCCCCCCCCcccccch
Q 001596 232 VSAFSVIVGDNPMANLRSLDALLGM---VSSKVGKRHALTGFEALKELFVSSLLPDRKLKTLVQRPLDNLPETKDGYSLL 308 (1048)
Q Consensus 232 IaAltllVQesPvhnl~~L~~Ll~m---~~~K~srr~al~Al~aLkdLF~~~LLPdRKLr~f~qqPl~~l~~~k~~~~~L 308 (1048)
++.|.-=|--+=..+=.-|..|+.+ .-.|....+++.|+.++..=|. + |+-.||.|+-|-+..+..
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~-d--~N~~iR~~AlR~ls~l~~-------- 121 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQ-D--PNEEIRGFALRTLSLLRV-------- 121 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhcc-C--CCHHHHHHHHHHHHhcCh--------
Confidence 5555444433333333344555443 1223445778888888655442 2 677788888776655433
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCch-hHHH-HHHHhhhcCCCCCcchhhHHHHHHHH
Q 001596 309 LFWYYEEFLKQRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPE-QEHR-LLSALVNKLGDPQNKGASNADFHLSN 386 (1048)
Q Consensus 309 ~lWyFEd~LK~~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPE-QE~~-LL~lLVNKLGDp~~KVASkAs~lL~~ 386 (1048)
+..-..++..+.++.+|+.+++|+.|.-+++.|-.-.|+ .... +.-++...+-|++..|...|..-|..
T Consensus 122 ---------~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~ 192 (757)
T COG5096 122 ---------KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAE 192 (757)
T ss_pred ---------HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHH
Confidence 223445666778889999999999999999999988888 3444 77778888889999999988766655
Q ss_pred HHhh
Q 001596 387 LLAD 390 (1048)
Q Consensus 387 LL~~ 390 (1048)
+-..
T Consensus 193 i~~e 196 (757)
T COG5096 193 IDPE 196 (757)
T ss_pred hchh
Confidence 5433
No 62
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=63.52 E-value=6 Score=47.94 Aligned_cols=22 Identities=55% Similarity=0.604 Sum_probs=12.4
Q ss_pred hhhhhcccchHhhhhhcccCCC
Q 001596 872 KKKKKKGAEDEAAEELFDVDGD 893 (1048)
Q Consensus 872 k~k~k~~~dde~~~~~~~~d~~ 893 (1048)
+++++++.||++.++.++.|+.
T Consensus 272 krkkk~d~Dd~a~eesdd~d~e 293 (555)
T KOG2393|consen 272 KRKKKKDVDDEAFEESDDGDNE 293 (555)
T ss_pred ccccccCCcccccccCCCcccc
Confidence 3455667777666654444433
No 63
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=62.50 E-value=3.1 Score=46.13 Aligned_cols=12 Identities=33% Similarity=0.584 Sum_probs=5.3
Q ss_pred hhhhhhhhccCC
Q 001596 995 GRRKRKRKSHKK 1006 (1048)
Q Consensus 995 ~~~k~krk~~~~ 1006 (1048)
.|...++|++++
T Consensus 262 ~K~~~k~kk~~~ 273 (303)
T KOG3064|consen 262 NKKESKKKKGKK 273 (303)
T ss_pred hhhhhhhcccCC
Confidence 444444444443
No 64
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=61.22 E-value=33 Score=34.59 Aligned_cols=103 Identities=16% Similarity=0.195 Sum_probs=68.7
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhC-CCchHH-----
Q 001596 324 FVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADH-PNMKAV----- 397 (1048)
Q Consensus 324 Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~H-P~MK~V----- 397 (1048)
|-+.+++.+...+..---.++--+++++...+..=...++.|..+|+.++.++.-.|..+|..++..- +.+..-
T Consensus 6 ~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~ 85 (140)
T PF00790_consen 6 ITELIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKE 85 (140)
T ss_dssp HHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHH
T ss_pred HHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHH
Confidence 44566777666655555566677999999999988999999999999999999999999999998875 233222
Q ss_pred HHHHHHHhhcCCCCCcc--hHHHHHHHhhhh
Q 001596 398 VINEVDSFLFRPHLGLR--AKYHAVNFLSQI 426 (1048)
Q Consensus 398 Vv~EVe~lLfRpni~~r--AqYYAv~fLnQi 426 (1048)
.++++..++.++..... .+-.++.+|.+-
T Consensus 86 fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 86 FLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp HHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 34445555544433322 344444444433
No 65
>KOG2154 consensus Predicted nucleolar protein involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=61.04 E-value=59 Score=39.34 Aligned_cols=136 Identities=19% Similarity=0.229 Sum_probs=77.8
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHhhChhhh-----HHHHHHHHHhhhccCChhHHHHHHHHHHHHHhcCCC--CC--Ccc
Q 001596 217 KMLAATQRSGTAADKVSAFSVIVGDNPMAN-----LRSLDALLGMVSSKVGKRHALTGFEALKELFVSSLL--PD--RKL 287 (1048)
Q Consensus 217 kwl~ti~~sGTlsDKIaAltllVQesPvhn-----l~~L~~Ll~m~~~K~srr~al~Al~aLkdLF~~~LL--Pd--RKL 287 (1048)
-||+..- |-++++.-==+++|-..-|-+ ++..|-|..++....| -.+++|+.+|-.|..+.=| |+ +||
T Consensus 242 ~Wls~l~--~~ls~~lykkil~vih~rvip~l~~P~kl~DFLtdsyd~~~g-~vslLALngLF~Lm~khNleYP~FY~KL 318 (505)
T KOG2154|consen 242 MWLSSLN--GELSLKLYKKILLVIHKRVIPHLISPTKLMDFLTDSYDDIGG-VVSLLALNGLFILMTKHNLEYPDFYEKL 318 (505)
T ss_pred HHHHHhc--CcCcHHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHhccCC-chhHHHHhHHHHHHHHcCCCCchHHHHH
Confidence 4665433 888887766555554322211 5666677777765544 5678888888888877654 75 677
Q ss_pred cccccCCCCCCCCCcccccchhHHHHHHHHH-------HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhHHH
Q 001596 288 KTLVQRPLDNLPETKDGYSLLLFWYYEEFLK-------QRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHR 360 (1048)
Q Consensus 288 r~f~qqPl~~l~~~k~~~~~L~lWyFEd~LK-------~~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~~ 360 (1048)
..+...-+-.+ | .+ -.+++.=|-.. ...+.||+.|.+++--.=+.--.-.|.+||.||..+|++...
T Consensus 319 Y~Ll~Pslfh~---K--yR-arff~L~D~FLSSTHLpa~LvAsFlKrLaRlaL~APpeA~~~vipfI~Nll~rHp~c~~l 392 (505)
T KOG2154|consen 319 YALLNPSLFHV---K--YR-ARFFRLADLFLSSTHLPAYLVASFLKRLARLALEAPPEAIVIVIPFICNLLRRHPNCQPL 392 (505)
T ss_pred HHhcCchHHHH---H--HH-HHHHHHHHHHhhcccchHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHhCCchhhh
Confidence 75543322110 0 00 00111111110 134788888888765543444455678888888888876654
Q ss_pred H
Q 001596 361 L 361 (1048)
Q Consensus 361 L 361 (1048)
+
T Consensus 393 v 393 (505)
T KOG2154|consen 393 V 393 (505)
T ss_pred h
Confidence 3
No 66
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.85 E-value=8.1 Score=42.78 Aligned_cols=7 Identities=29% Similarity=0.027 Sum_probs=3.6
Q ss_pred hHHHHhh
Q 001596 905 NEEIDNM 911 (1048)
Q Consensus 905 deE~~~~ 911 (1048)
|+.||..
T Consensus 25 de~~~~~ 31 (240)
T PF05764_consen 25 DEFFWNQ 31 (240)
T ss_pred hhhhhhh
Confidence 4556643
No 67
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.65 E-value=4.9e+02 Score=33.82 Aligned_cols=133 Identities=16% Similarity=0.086 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCch------hHHHHHHHhhhcCCCCCcchhhHHHHHHHHH
Q 001596 314 EEFLKQRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPE------QEHRLLSALVNKLGDPQNKGASNADFHLSNL 387 (1048)
Q Consensus 314 Ed~LK~~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPE------QE~~LL~lLVNKLGDp~~KVASkAs~lL~~L 387 (1048)
+++|+.+...-+..++.+..|+-.++|..+--+++.+....|| ++.-++..|++-|.| ..+||++++.-+..|
T Consensus 397 ~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~L 475 (859)
T KOG1241|consen 397 PDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISL 475 (859)
T ss_pred hhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHH
Confidence 5788999999999999998999999998877777777776666 567778888887777 567888888777777
Q ss_pred HhhC----------CCchHH---HHHHHHHhhcCCC-CCcchHHHHHHHhhhhhcccCCCchHHHHHHHHHHHHHHH
Q 001596 388 LADH----------PNMKAV---VINEVDSFLFRPH-LGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFK 450 (1048)
Q Consensus 388 L~~H----------P~MK~V---Vv~EVe~lLfRpn-i~~rAqYYAv~fLnQi~Ls~k~d~~~vA~~LI~iYF~lFk 450 (1048)
...- +-+..+ |+..+-..--|+. ...+.+--|--.|+.|+..... .+...+..+|...-.
T Consensus 476 aea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~---~vy~~v~~~~l~il~ 549 (859)
T KOG1241|consen 476 AEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD---DVYPMVQKLTLVILE 549 (859)
T ss_pred HHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH---HHHHHHHHHHHHHHH
Confidence 6321 112222 3444333334543 1223333334456667665432 577777777776654
No 68
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=60.45 E-value=63 Score=36.23 Aligned_cols=115 Identities=18% Similarity=0.217 Sum_probs=78.0
Q ss_pred HhcCchHHHHHHHHHHHHHHhhcCchh-----HHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCchHH--HHHHHH
Q 001596 331 SSRDVLPVLKTKALKIVYALLTSKPEQ-----EHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAV--VINEVD 403 (1048)
Q Consensus 331 ls~D~l~~~R~kal~~i~~LL~~kPEQ-----E~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~V--Vv~EVe 403 (1048)
..+|| +++.+|+.++..+ ...|.. +...+.++++-|-+|+..|-.+|...|..|=...++...+ .+..|.
T Consensus 23 ~t~dp--~i~e~al~al~n~-aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc 99 (254)
T PF04826_consen 23 STEDP--FIQEKALIALGNS-AAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVC 99 (254)
T ss_pred cCCCh--HHHHHHHHHHHhh-ccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Confidence 34554 8899998888774 667763 3456889999999999999999998888776666665443 333444
Q ss_pred HhhcCCCCCcchHHHHHHHhhhhhcccCCCchHHHHHHHHHHHHHHHHHHh
Q 001596 404 SFLFRPHLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLIT 454 (1048)
Q Consensus 404 ~lLfRpni~~rAqYYAv~fLnQi~Ls~k~d~~~vA~~LI~iYF~lFk~lv~ 454 (1048)
+.+.-...+...|--|+..|.++..+... ..++.-|+.-|-.++.
T Consensus 100 ~~~~s~~lns~~Q~agLrlL~nLtv~~~~------~~~l~~~i~~ll~LL~ 144 (254)
T PF04826_consen 100 EETVSSPLNSEVQLAGLRLLTNLTVTNDY------HHMLANYIPDLLSLLS 144 (254)
T ss_pred HHHhcCCCCCHHHHHHHHHHHccCCCcch------hhhHHhhHHHHHHHHH
Confidence 43333335678888999999999877533 2233345555544554
No 69
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.64 E-value=5e+02 Score=33.58 Aligned_cols=245 Identities=18% Similarity=0.139 Sum_probs=139.5
Q ss_pred hcCchHHHHHHHHHHHHHHhhcCchh--HHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhC-CCchHHHHHHH---HHh
Q 001596 332 SRDVLPVLKTKALKIVYALLTSKPEQ--EHRLLSALVNKLGDPQNKGASNADFHLSNLLADH-PNMKAVVINEV---DSF 405 (1048)
Q Consensus 332 s~D~l~~~R~kal~~i~~LL~~kPEQ--E~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~H-P~MK~VVv~EV---e~l 405 (1048)
+.++.+++|.+|--|+..|++..|.- =.--..-+|.-|+|.+-.|..-|+-++..|.... +.-|..+--.| .++
T Consensus 157 S~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~ri 236 (938)
T KOG1077|consen 157 SGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRI 236 (938)
T ss_pred CCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHH
Confidence 66778899999999999999999871 1123456777889999999999999999988775 55666655444 444
Q ss_pred hcCCCCC-cchHHHHH---------HHhhhhhcccCCCchHHHHHHHHHHHHHHHHHHhhccCCCccccccccCCCCcCc
Q 001596 406 LFRPHLG-LRAKYHAV---------NFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLITEAGAGDKMDKNSKTGNKHIST 475 (1048)
Q Consensus 406 LfRpni~-~rAqYYAv---------~fLnQi~Ls~k~d~~~vA~~LI~iYF~lFk~lv~~~~~~~k~~Kk~K~~~K~~~~ 475 (1048)
.+--+.+ +.-.||.| +-|-|+--+. +++.+-.+|+++.=.+ +.+..+..
T Consensus 237 v~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~--~D~~~r~~l~evl~~i----Lnk~~~~~--------------- 295 (938)
T KOG1077|consen 237 VVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTP--EDPSTRARLNEVLERI----LNKAQEPP--------------- 295 (938)
T ss_pred HhhcccchhhceeecCCChHHHHHHHHHHHhCCCC--CCchHHHHHHHHHHHH----HhccccCc---------------
Confidence 4444444 34456543 3344554333 2355666777754433 22111100
Q ss_pred ccccccccCCCCCcccchhhHHH-HHHhhHHhhccCCCCchhhhHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhc-C
Q 001596 476 FSKKSQLKISPEPHIELDSRILS-ALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNFNVAVQALMLLDKISSK-N 553 (1048)
Q Consensus 476 k~kK~~~~~~~e~~~e~~sKLLs-ALLtGVNRA~Py~~~d~~ddi~e~~ldtLFrI~Hs~nfntsIQAL~LLfqI~s~-~ 553 (1048)
+.|| -..+-.-. .|...||=++++-..+ .++..-++.|-.....--.|+.-.||--+-.+.++ .
T Consensus 296 ~~k~-----------vq~~na~naVLFeaI~l~~h~D~e~---~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~ 361 (938)
T KOG1077|consen 296 KSKK-----------VQHSNAKNAVLFEAISLAIHLDSEP---ELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEF 361 (938)
T ss_pred cccc-----------hHhhhhHHHHHHHHHHHHHHcCCcH---HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccc
Confidence 0111 01111122 3345567778877654 46666666665544444567777777655555544 3
Q ss_pred CCChhHHHHHHHhhhcCccccCCccHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhcCCch
Q 001596 554 HIVSDRFYRALYSKLLLPAAMNSSKAEMFIGLLHRAMKNDVNLKRVAAFSKRLLQVVLQQPPQ 616 (1048)
Q Consensus 554 ~~~sdRFYraLY~kLLdP~l~~SSk~~mfLnLL~ksLK~D~~~~RVaAFVKRLLQval~~pP~ 616 (1048)
.++.-++|.-+-=..|.-. .-.|-+.+-+.|||-. .+..-++-.|--|||-..++.++
T Consensus 362 s~davK~h~d~Ii~sLkte-rDvSirrravDLLY~m----cD~~Nak~IV~elLqYL~tAd~s 419 (938)
T KOG1077|consen 362 SIDAVKKHQDTIINSLKTE-RDVSIRRRAVDLLYAM----CDVSNAKQIVAELLQYLETADYS 419 (938)
T ss_pred hHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHH----hchhhHHHHHHHHHHHHhhcchH
Confidence 4455555543321122100 1134455666777743 23444555666777776665543
No 70
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=59.15 E-value=9.1 Score=49.97 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=25.1
Q ss_pred HHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchh
Q 001596 343 ALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGA 377 (1048)
Q Consensus 343 al~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVA 377 (1048)
.+-|++.|-..|.|||.+.=..++.-+|-..+.+|
T Consensus 804 gmh~~~~~anGKa~q~~~~Ptfl~a~e~pi~ggla 838 (3015)
T KOG0943|consen 804 GMHCIFDLANGKAEQENNFPTFLIAFEGPIEGGLA 838 (3015)
T ss_pred eeEEEEEccCCchhhhccCcchhhhhcccccCCcc
Confidence 44577888889999998887777766665554443
No 71
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=58.93 E-value=11 Score=37.21 Aligned_cols=38 Identities=26% Similarity=0.226 Sum_probs=34.1
Q ss_pred CchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhC
Q 001596 354 KPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADH 391 (1048)
Q Consensus 354 kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~H 391 (1048)
.|..+.=-+.+||+.|.||+..|+..|..+|......+
T Consensus 2 ~~~f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 2 VPDFEDWGIELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred CcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 57788888999999999999999999999998888777
No 72
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=58.27 E-value=9.2 Score=46.39 Aligned_cols=10 Identities=20% Similarity=0.169 Sum_probs=6.0
Q ss_pred HHHHHHhhhc
Q 001596 856 FHKFYMNKVN 865 (1048)
Q Consensus 856 Fh~yf~~k~~ 865 (1048)
++.|++.|.-
T Consensus 419 L~~fl~sK~l 428 (615)
T KOG0526|consen 419 LFDFLNSKGL 428 (615)
T ss_pred HHHHHhhcCc
Confidence 4677776533
No 73
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=57.06 E-value=7.3 Score=44.98 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=21.1
Q ss_pred hhHHHHHHhhccCchHHHHHHHhhc
Q 001596 761 SWWELMVLASHVHPSVSTMAGTLLS 785 (1048)
Q Consensus 761 ~LWEL~~L~~HyHPSVa~fA~~LL~ 785 (1048)
-|=.|+.+..|-.=+|+..|+.||+
T Consensus 5 LL~DL~~Yk~~k~K~V~~Aarsli~ 29 (324)
T PF05285_consen 5 LLQDLVQYKKSKDKGVMMAARSLIN 29 (324)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4567888999999999999999965
No 74
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=55.51 E-value=9.1 Score=47.98 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=7.2
Q ss_pred cCCcccccCCCCcc
Q 001596 785 SGANIVYNGNPLSD 798 (1048)
Q Consensus 785 ~G~~I~y~GdPL~D 798 (1048)
....|+|+--|...
T Consensus 24 k~d~I~~~l~PV~g 37 (622)
T PF02724_consen 24 KSDNIQYSLVPVSG 37 (622)
T ss_pred HhcCCCeeEEEeCC
Confidence 34555555555443
No 75
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=55.49 E-value=8 Score=47.60 Aligned_cols=13 Identities=15% Similarity=0.174 Sum_probs=7.5
Q ss_pred HHHHHHhhhhhcc
Q 001596 417 YHAVNFLSQIRLS 429 (1048)
Q Consensus 417 YYAv~fLnQi~Ls 429 (1048)
-||+..+-.+..+
T Consensus 396 nyal~l~dt~qi~ 408 (1001)
T COG5406 396 NYALLLIDTEQIS 408 (1001)
T ss_pred chhhhhccceEee
Confidence 3787777444433
No 76
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=55.22 E-value=6.4 Score=49.29 Aligned_cols=16 Identities=31% Similarity=0.737 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHhC
Q 001596 616 QYACGCLFLLSEVLKAR 632 (1048)
Q Consensus 616 ~facg~L~LIseLLk~~ 632 (1048)
-.+|+|-+| ..||+..
T Consensus 11 DalcA~kiL-~~Llk~d 26 (622)
T PF02724_consen 11 DALCACKIL-TSLLKSD 26 (622)
T ss_pred HHHHHHHHH-HHHHHhc
Confidence 467777755 6788754
No 77
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=54.81 E-value=16 Score=30.40 Aligned_cols=51 Identities=29% Similarity=0.322 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHhhcCch----hHHHHHHHhhhcCCCCCcchhhHHHHHHHHH
Q 001596 337 PVLKTKALKIVYALLTSKPE----QEHRLLSALVNKLGDPQNKGASNADFHLSNL 387 (1048)
Q Consensus 337 ~~~R~kal~~i~~LL~~kPE----QE~~LL~lLVNKLGDp~~KVASkAs~lL~~L 387 (1048)
+.+|..|+.++-.|....|+ +...++..|+.-|.|++..|-..|.+.|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46788888888876666666 3458888889999999999988888888754
No 78
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.50 E-value=1.5e+02 Score=38.08 Aligned_cols=76 Identities=25% Similarity=0.281 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhH--HHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCchHH
Q 001596 322 ERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQE--HRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAV 397 (1048)
Q Consensus 322 ~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE--~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~V 397 (1048)
..+.+-|-+..+|..+++|..|.-++..|-.-.|++. .-|+..|..-+-|.+.-|...|...|..+...||++..+
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc
Confidence 3344567788999999999999999999988888864 556667777777999999999999999999999986554
No 79
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.35 E-value=5.6e+02 Score=34.77 Aligned_cols=218 Identities=17% Similarity=0.249 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHHHHhhcCchhH---HHHHHHhhhcCCCCCcchhh----HHHHHHHHHHhhCC-CchHHHHHHHHHhh-
Q 001596 336 LPVLKTKALKIVYALLTSKPEQE---HRLLSALVNKLGDPQNKGAS----NADFHLSNLLADHP-NMKAVVINEVDSFL- 406 (1048)
Q Consensus 336 l~~~R~kal~~i~~LL~~kPEQE---~~LL~lLVNKLGDp~~KVAS----kAs~lL~~LL~~HP-~MK~VVv~EVe~lL- 406 (1048)
...++.|+-+++-+|+.. |+.| ...+..+-|-|+|+-..+.+ .+..+|..|++.|| .....|...|.++|
T Consensus 667 ~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL 745 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVIL 745 (1176)
T ss_pred cHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 346888999988888877 6654 44566677888887765544 35668999999999 45556777776533
Q ss_pred cCCCCCc---chHHHHHHHhhhhhcccCCCchHHHHHHHHHHHHHHHHHHhhccCCCccccccccCCCCcCccccccccc
Q 001596 407 FRPHLGL---RAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLITEAGAGDKMDKNSKTGNKHISTFSKKSQLK 483 (1048)
Q Consensus 407 fRpni~~---rAqYYAv~fLnQi~Ls~k~d~~~vA~~LI~iYF~lFk~lv~~~~~~~k~~Kk~K~~~K~~~~k~kK~~~~ 483 (1048)
+-...+. +..+-++.|+--|..+... +.+=+...|+-|+.....-+-.
T Consensus 746 ~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~-g~e~~~~~lnefl~~Isagl~g---------------------------- 796 (1176)
T KOG1248|consen 746 SLKEVNVKARRNAFALLVFIGAIQSSLDD-GNEPASAILNEFLSIISAGLVG---------------------------- 796 (1176)
T ss_pred hcccccHHHHhhHHHHHHHHHHHHhhhcc-cccchHHHHHHHHHHHHhhhcc----------------------------
Confidence 3333333 3446666777734444332 2222666777777765433210
Q ss_pred CCCCCcccchhhHHHHHHhhHHhhcc-CCCCchhhhHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhcCCCChhHHHH
Q 001596 484 ISPEPHIELDSRILSALLMGVNRAFP-YVSSNEADDIIEVQTPMLFKLVHSKNFNVAVQALMLLDKISSKNHIVSDRFYR 562 (1048)
Q Consensus 484 ~~~e~~~e~~sKLLsALLtGVNRA~P-y~~~d~~ddi~e~~ldtLFrI~Hs~nfntsIQAL~LLfqI~s~~~~~sdRFYr 562 (1048)
-..++.++-|.++++.+- |.+.- -+++++..++++=--.-+.+-.++.-|+. |-+
T Consensus 797 --------d~~~~~as~Ivai~~il~e~~~~l-d~~~l~~li~~V~~~L~s~sreI~kaAI~---------------fik 852 (1176)
T KOG1248|consen 797 --------DSTRVVASDIVAITHILQEFKNIL-DDETLEKLISMVCLYLASNSREIAKAAIG---------------FIK 852 (1176)
T ss_pred --------cHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHhcCCHHHHHHHHH---------------HHH
Confidence 012344443778777653 22221 13345555554432223334444544543 333
Q ss_pred HHHhhhcCccccCCccHHHHHHHHHHHHhcC-c--cHHHHHHHHHHHHHHH
Q 001596 563 ALYSKLLLPAAMNSSKAEMFIGLLHRAMKND-V--NLKRVAAFSKRLLQVV 610 (1048)
Q Consensus 563 aLY~kLLdP~l~~SSk~~mfLnLL~ksLK~D-~--~~~RVaAFVKRLLQva 610 (1048)
.|-- -.|...-+.+...+|-.|++ |..| . ...-|.-|++||++.+
T Consensus 853 vlv~--~~pe~~l~~~~~~LL~sll~-ls~d~k~~~r~Kvr~LlekLirkf 900 (1176)
T KOG1248|consen 853 VLVY--KFPEECLSPHLEELLPSLLA-LSHDHKIKVRKKVRLLLEKLIRKF 900 (1176)
T ss_pred HHHH--cCCHHHHhhhHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHh
Confidence 3321 13444445555555555555 4344 2 3334777999998876
No 80
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=53.23 E-value=5.6e+02 Score=32.89 Aligned_cols=137 Identities=19% Similarity=0.322 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCCCcchHHH
Q 001596 339 LKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVVINEVDSFLFRPHLGLRAKYH 418 (1048)
Q Consensus 339 ~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~VVv~EVe~lLfRpni~~rAqYY 418 (1048)
+-..+-..+.++|.. +.|..|+.-||.=...... ..|..+|..+ +.|.-|.+ ...|..++-+| ..+.-
T Consensus 20 ~~~~~~~~~~~~~~~--~~~~~l~~~l~~y~~~t~s---~~~~~il~~~--~~P~~K~~-~~~l~~~~~~~----~~Rl~ 87 (668)
T PF04388_consen 20 VLEEIKALLQELLNS--DREPWLVNGLVDYYLSTNS---QRALEILVGV--QEPHDKHL-FDKLNDYFVKP----SYRLQ 87 (668)
T ss_pred hHHHHHHHHHHHhhc--cchHHHHHHHHHHHhhcCc---HHHHHHHHhc--CCccHHHH-HHHHHHHHcCc----hhHHH
Confidence 333444456666655 3444667777654333221 2344444433 44555554 66677777544 67789
Q ss_pred HHHHhhhhhcccCCCchHHHHHHHHHHHHHHHHHHhhccCCCccccccccCCCCcCcccccccccCCCCCcccchhhHHH
Q 001596 419 AVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLITEAGAGDKMDKNSKTGNKHISTFSKKSQLKISPEPHIELDSRILS 498 (1048)
Q Consensus 419 Av~fLnQi~Ls~k~d~~~vA~~LI~iYF~lFk~lv~~~~~~~k~~Kk~K~~~K~~~~k~kK~~~~~~~e~~~e~~sKLLs 498 (1048)
|+++|.+++=+.- .-..+++. -.||..++++.. .+.+.-++.
T Consensus 88 ~L~Ll~~~v~~qp----~~l~~i~~--t~Lf~~LLk~L~--------------------------------~D~~~~~~~ 129 (668)
T PF04388_consen 88 ALTLLGHFVRSQP----PWLYKILQ--TPLFKSLLKCLQ--------------------------------FDTSITVVS 129 (668)
T ss_pred HHHHHHHHHhcCC----chHHHHhc--ChhHHHHHHHHh--------------------------------hcccHHHHH
Confidence 9999999986532 22233332 245665555321 244677888
Q ss_pred HHHhhHHhhccCCCCchhhhHHHHHHHHHHHH
Q 001596 499 ALLMGVNRAFPYVSSNEADDIIEVQTPMLFKL 530 (1048)
Q Consensus 499 ALLtGVNRA~Py~~~d~~ddi~e~~ldtLFrI 530 (1048)
+.|+.+-=.+|.+.. .+..|+++||.|
T Consensus 130 ~al~~LimlLP~ip~-----~l~~~L~~Lf~I 156 (668)
T PF04388_consen 130 SALLVLIMLLPHIPS-----SLGPHLPDLFNI 156 (668)
T ss_pred HHHHHHHHHhccccc-----hhhHHHHHHHHH
Confidence 888899999999975 356788889865
No 81
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=53.16 E-value=7.8 Score=48.51 Aligned_cols=20 Identities=20% Similarity=0.077 Sum_probs=8.6
Q ss_pred cHHHHHHH-HHHHHHHHhcCC
Q 001596 595 NLKRVAAF-SKRLLQVVLQQP 614 (1048)
Q Consensus 595 ~~~RVaAF-VKRLLQval~~p 614 (1048)
..+|+.|= .||..+-..+.+
T Consensus 14 ~eqr~~a~~~k~~~~s~~~~~ 34 (822)
T KOG2141|consen 14 KEQRKSAKQLKKMAGSQKSQR 34 (822)
T ss_pred HHHHHHHHHHHHHhhhccccc
Confidence 34554443 344444444443
No 82
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=53.07 E-value=8.1 Score=44.62 Aligned_cols=13 Identities=8% Similarity=0.192 Sum_probs=8.4
Q ss_pred CCcccchhhhhhh
Q 001596 1009 ATPFASLEDYQHL 1021 (1048)
Q Consensus 1009 ~s~Fas~e~f~~~ 1021 (1048)
++-|+++.+-++.
T Consensus 227 ~~~~v~~~dIe~~ 239 (324)
T PF05285_consen 227 SDELVDPSDIEGF 239 (324)
T ss_pred ccccCCHHHHHhH
Confidence 6777777665543
No 83
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.06 E-value=6.6e+02 Score=33.02 Aligned_cols=249 Identities=19% Similarity=0.218 Sum_probs=129.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHhhchHHHHHHHHHHHHhhChhhhH-----HHHHHHHHhh
Q 001596 183 VDLKYVERKRELGERLLWQYVSDYEGSRGQTGDIKMLAATQRSGTAADKVSAFSVIVGDNPMANL-----RSLDALLGMV 257 (1048)
Q Consensus 183 ~~~~~v~~~~~~a~~ll~~~~~~y~~~~~~~Sd~kwl~ti~~sGTlsDKIaAltllVQesPvhnl-----~~L~~Ll~m~ 257 (1048)
++..++.++|..--++...|++.|+..- +.||-..++ +-.+||+--+|.-.. ++|.-|...+
T Consensus 255 ee~~~l~~lka~ICEi~~LY~~kYeEef-----~~fl~~fv~--------~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~ 321 (960)
T KOG1992|consen 255 EEATVLDKLKAQICEIFNLYATKYEEEF-----QPFLPDFVT--------ATWNLLVSTSPDTKYDYLVSKALQFLTSVS 321 (960)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhHHHH-----HhhHHHHHH--------HHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 4447899999999999999999998642 135544432 335566666665443 3333444443
Q ss_pred hccCChhHHHHHHHHHHHHHhcCCCCCCcccc-----cccCCCC----CCCCCccccc---------chhHHHHHHHHHH
Q 001596 258 SSKVGKRHALTGFEALKELFVSSLLPDRKLKT-----LVQRPLD----NLPETKDGYS---------LLLFWYYEEFLKQ 319 (1048)
Q Consensus 258 ~~K~srr~al~Al~aLkdLF~~~LLPdRKLr~-----f~qqPl~----~l~~~k~~~~---------~L~lWyFEd~LK~ 319 (1048)
..+.-.+-...=..|+.+--.-+||+.-||. |...|+. .++.+....| .| .-.||-|.-.
T Consensus 322 -~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL-~~~fe~~vt~ 399 (960)
T KOG1992|consen 322 -RRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGL-CKNFEGQVTG 399 (960)
T ss_pred -hhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHH-HHHhcchhHH
Confidence 2211111111222333333334689877773 3333432 2333332222 22 3467999999
Q ss_pred HHHHHHHHH-HHHhcCch--HHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHh----hCC
Q 001596 320 RYERFVLAL-EESSRDVL--PVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLA----DHP 392 (1048)
Q Consensus 320 ~Y~~Fvq~L-e~ls~D~l--~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~----~HP 392 (1048)
.+...++.+ ...+.+|- +..+..|+-.+..|-..--++ +.=..-.|+|=| -+.=.+...+-.|++ .||
T Consensus 400 v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~--~~Gvtstn~lvd---v~~Ff~~~ilp~L~s~~vn~~p 474 (960)
T KOG1992|consen 400 VFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTA--KHGVTSTNELVD---VVDFFANQILPDLLSPNVNEFP 474 (960)
T ss_pred HHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchh--hcceeecccccc---HHHHHHHHhhHHhccCcccccc
Confidence 999999985 66777775 445556666666555432211 111111122222 111233344444544 566
Q ss_pred CchHHHHHHHHHhhcCCCCC-------------------cchHHHHHHHhhhhhcccCCC------chHHHHHHHHHHHH
Q 001596 393 NMKAVVINEVDSFLFRPHLG-------------------LRAKYHAVNFLSQIRLSHKGD------GPKVAKRLIDVYFA 447 (1048)
Q Consensus 393 ~MK~VVv~EVe~lLfRpni~-------------------~rAqYYAv~fLnQi~Ls~k~d------~~~vA~~LI~iYF~ 447 (1048)
-.|.--++- -++||.+++ .-.--||.+.+-++.+-+... ...+|+-++.+.-.
T Consensus 475 ilka~aIKy--~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~n 552 (960)
T KOG1992|consen 475 ILKADAIKY--IYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTN 552 (960)
T ss_pred chhhcccce--eeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHH
Confidence 655431111 144555442 122348889998887765431 12466666666667
Q ss_pred HHHHHH
Q 001596 448 LFKVLI 453 (1048)
Q Consensus 448 lFk~lv 453 (1048)
||+.+-
T Consensus 553 Lf~a~s 558 (960)
T KOG1992|consen 553 LFKALS 558 (960)
T ss_pred HHHhcc
Confidence 775544
No 84
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=52.79 E-value=1e+02 Score=32.05 Aligned_cols=88 Identities=20% Similarity=0.261 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHhcC--c--hHHHHHHHHHHHHHHhhcCchhHH--------HHHHHhhhcCCCCCcchhhHHHHH
Q 001596 316 FLKQRYERFVLALEESSRD--V--LPVLKTKALKIVYALLTSKPEQEH--------RLLSALVNKLGDPQNKGASNADFH 383 (1048)
Q Consensus 316 ~LK~~Y~~Fvq~Le~ls~D--~--l~~~R~kal~~i~~LL~~kPEQE~--------~LL~lLVNKLGDp~~KVASkAs~l 383 (1048)
.|.+.|..+++.|-..... + +-..--.++..+|.++..+||--+ .++..+++.+.+ ..+...+...
T Consensus 60 ~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~ 137 (165)
T PF08167_consen 60 ILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDA 137 (165)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHH
Confidence 3445555555555444444 2 233344566778888899999322 344455555444 3444456666
Q ss_pred HHHHHhhCCCchHHHHHHHHHh
Q 001596 384 LSNLLADHPNMKAVVINEVDSF 405 (1048)
Q Consensus 384 L~~LL~~HP~MK~VVv~EVe~l 405 (1048)
|..|+..||.--.-...-|+.+
T Consensus 138 L~~ll~~~ptt~rp~~~ki~~~ 159 (165)
T PF08167_consen 138 LATLLPHHPTTFRPFANKIESA 159 (165)
T ss_pred HHHHHHHCCccccchHHHHHHH
Confidence 6677777766544444444443
No 85
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=52.61 E-value=55 Score=33.47 Aligned_cols=68 Identities=16% Similarity=0.146 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhC
Q 001596 324 FVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADH 391 (1048)
Q Consensus 324 Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~H 391 (1048)
|-..+++...+.+...--..+--+|+++...+.+-...++.|..+|..++..++-.|..+|..+...-
T Consensus 5 ~~~~I~kATs~~l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNC 72 (142)
T cd03569 5 FDELIEKATSELLGEPDLASILEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNC 72 (142)
T ss_pred HHHHHHHHcCcccCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHC
Confidence 55667777777665555556667999999999999999999999999999999999999999998874
No 86
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.57 E-value=5.8e+02 Score=32.20 Aligned_cols=72 Identities=14% Similarity=0.112 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHh---hcCchh--HHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCC
Q 001596 322 ERFVLALEESSRDVLPVLKTKALKIVYALL---TSKPEQ--EHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPN 393 (1048)
Q Consensus 322 ~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL---~~kPEQ--E~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~ 393 (1048)
-.|+..|-.+..|+-..+|..+=+++.++| .++|+. -...+.++|+-++.|+.-+..+|.+.|...+..-|.
T Consensus 207 ~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~ 283 (675)
T KOG0212|consen 207 PSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR 283 (675)
T ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc
Confidence 356777888999999999999999899888 577874 567889999999999999999998888877776654
No 87
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=52.57 E-value=11 Score=49.17 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=9.6
Q ss_pred CCCccCcHHHHHHHHHH
Q 001596 794 NPLSDLTLTAFLDKFME 810 (1048)
Q Consensus 794 dPL~DfTL~~FLDRFvy 810 (1048)
||-.|..+.-+||+|+.
T Consensus 1472 dprvdqdiemwl~~Ft~ 1488 (3015)
T KOG0943|consen 1472 DPRVDQDIEMWLDCFTH 1488 (3015)
T ss_pred CcccchhHHHHHHHHHH
Confidence 55555555556666653
No 88
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.06 E-value=3.2e+02 Score=35.47 Aligned_cols=195 Identities=19% Similarity=0.150 Sum_probs=111.7
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHH---------HHhhCCC
Q 001596 323 RFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSN---------LLADHPN 393 (1048)
Q Consensus 323 ~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~---------LL~~HP~ 393 (1048)
.=+++|.-++.-|-..+|-.|++++..+-+.+|+-=...=.-|=+-..|+++.||+.|.-.|++ |.+.-++
T Consensus 282 pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~ 361 (865)
T KOG1078|consen 282 PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISS 361 (865)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3567788888889999999999999999999998432222222233449999999998877765 3333333
Q ss_pred --------chHHHHHHHHHhhcCCCCCcchHHHHHHHhhhhhcccCCCchHHHHHHHHHHHHHHHHHHhhccCCCccccc
Q 001596 394 --------MKAVVINEVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLITEAGAGDKMDKN 465 (1048)
Q Consensus 394 --------MK~VVv~EVe~lLfRpni~~rAqYYAv~fLnQi~Ls~k~d~~~vA~~LI~iYF~lFk~lv~~~~~~~k~~Kk 465 (1048)
.|-||++.|+.+..+ .++-+---+.||..|... .+ +.+--..++++-... +.....
T Consensus 362 fv~disDeFKivvvdai~sLc~~---fp~k~~~~m~FL~~~Lr~-eG-g~e~K~aivd~Ii~i----ie~~pd------- 425 (865)
T KOG1078|consen 362 FVSDISDEFKIVVVDAIRSLCLK---FPRKHTVMMNFLSNMLRE-EG-GFEFKRAIVDAIIDI----IEENPD------- 425 (865)
T ss_pred HHHhccccceEEeHHHHHHHHhh---ccHHHHHHHHHHHHHHHh-cc-CchHHHHHHHHHHHH----HHhCcc-------
Confidence 355677788877642 345555567888888776 32 334444444443332 111000
Q ss_pred cccCCCCcCcccccccccCCCC-CcccchhhHHHHHHhhHHhhccCCCCchhhhHHHHHHHHHHHHhhccchHHHHHHHH
Q 001596 466 SKTGNKHISTFSKKSQLKISPE-PHIELDSRILSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNFNVAVQALM 544 (1048)
Q Consensus 466 ~K~~~K~~~~k~kK~~~~~~~e-~~~e~~sKLLsALLtGVNRA~Py~~~d~~ddi~e~~ldtLFrI~Hs~nfntsIQAL~ 544 (1048)
.|. .++-. .-+ ...-....+..-+|-=+-|=-|.+..+. .+.. -+|..+|.-|+-+.--|+.
T Consensus 426 sKe-------~~L~~----LCefIEDce~~~i~~rILhlLG~EgP~a~~Ps---kyir---~iyNRviLEn~ivRaaAv~ 488 (865)
T KOG1078|consen 426 SKE-------RGLEH----LCEFIEDCEFTQIAVRILHLLGKEGPKAPNPS---KYIR---FIYNRVILENAIVRAAAVS 488 (865)
T ss_pred hhh-------HHHHH----HHHHHHhccchHHHHHHHHHHhccCCCCCCcc---hhhH---HHhhhhhhhhhhhHHHHHH
Confidence 000 00000 000 0000122333334444556667776652 3333 3577778888877777777
Q ss_pred HHHHHH
Q 001596 545 LLDKIS 550 (1048)
Q Consensus 545 LLfqI~ 550 (1048)
+|.++.
T Consensus 489 alaKfg 494 (865)
T KOG1078|consen 489 ALAKFG 494 (865)
T ss_pred HHHHHh
Confidence 777765
No 89
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.58 E-value=6.9e+02 Score=32.78 Aligned_cols=94 Identities=27% Similarity=0.370 Sum_probs=68.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhH-HHHH------HHhhhcCCCCCcchhh
Q 001596 306 SLLLFWYYEEFLKQRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQE-HRLL------SALVNKLGDPQNKGAS 378 (1048)
Q Consensus 306 ~~L~lWyFEd~LK~~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE-~~LL------~lLVNKLGDp~~KVAS 378 (1048)
.-+-+|.=|-++|.. .+|+.|-....---.++|.-||..+..||..+|-+= ..|| +-||.=|-|..--|-.
T Consensus 107 dd~g~~iae~fik~q--d~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRN 184 (970)
T KOG0946|consen 107 DDLGLWIAEQFIKNQ--DNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRN 184 (970)
T ss_pred hHHHHHHHHHHHcCc--hhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhch
Confidence 357788888887764 566665444433456899999999999999998754 3333 2345555666667777
Q ss_pred HHHHHHHHHHhhCCCchHHHHHH
Q 001596 379 NADFHLSNLLADHPNMKAVVINE 401 (1048)
Q Consensus 379 kAs~lL~~LL~~HP~MK~VVv~E 401 (1048)
-|.++|..|.+..|+...+|+=|
T Consensus 185 e~iLlL~eL~k~n~~IQKlVAFE 207 (970)
T KOG0946|consen 185 EAILLLSELVKDNSSIQKLVAFE 207 (970)
T ss_pred hHHHHHHHHHccCchHHHHHHHH
Confidence 89999999999999998766543
No 90
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=50.64 E-value=2e+02 Score=33.94 Aligned_cols=99 Identities=20% Similarity=0.259 Sum_probs=72.3
Q ss_pred HhcCchHHHHHHHHHHHHHHhhcCch-hHH--------HHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCchHHHHH-
Q 001596 331 SSRDVLPVLKTKALKIVYALLTSKPE-QEH--------RLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVVIN- 400 (1048)
Q Consensus 331 ls~D~l~~~R~kal~~i~~LL~~kPE-QE~--------~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~VVv~- 400 (1048)
...++-..+|..|..++...+.++|- ||. .||.+|- -+....+-++|.|-+..|++.||.--.-+.+
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls---~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~ 208 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS---SDDPNTVRTKALFAISSLIRNNKPGQDEFLKL 208 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc---cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhc
Confidence 55667779999999999999999998 542 2333333 4666777789999999999999764332111
Q ss_pred ----HHHHhhcCCCCCcchHHHHHHHhhhhhcccCC
Q 001596 401 ----EVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKG 432 (1048)
Q Consensus 401 ----EVe~lLfRpni~~rAqYYAv~fLnQi~Ls~k~ 432 (1048)
-+..+|-+++...+.+--++.+|.-+....+.
T Consensus 209 ~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 209 NGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred CCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 23556778888888888888888777766554
No 91
>PF04006 Mpp10: Mpp10 protein; InterPro: IPR007151 This family includes proteins related to Mpp10 (M phase phosphoprotein 10). The U3 small nucleolar ribonucleoprotein (snoRNP) is required for three cleavage events that generate the mature 18S rRNA from the pre-rRNA. In Saccharomyces cerevisiae, depletion of Mpp10, a U3 snoRNP-specific protein, halts 18S rRNA production and impairs cleavage at the three U3 snoRNP-dependent sites [].
Probab=49.08 E-value=19 Score=45.00 Aligned_cols=26 Identities=23% Similarity=0.578 Sum_probs=18.1
Q ss_pred hhhccCCCC-CCcccchhhhhhhhccC
Q 001596 1000 KRKSHKKAG-ATPFASLEDYQHLLDDN 1025 (1048)
Q Consensus 1000 krk~~~~~~-~s~Fas~e~f~~~l~~~ 1025 (1048)
..+++++.| ++-|-|+++|...++..
T Consensus 175 ~~~~~d~~glnD~FFsidEfnk~~e~~ 201 (600)
T PF04006_consen 175 EEKKEDKSGLNDGFFSIDEFNKQLEEE 201 (600)
T ss_pred ccccccCCCcCCCcCCHHHHHHHHHHH
Confidence 444555666 88899998887766544
No 92
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=47.04 E-value=21 Score=47.33 Aligned_cols=40 Identities=23% Similarity=0.160 Sum_probs=23.8
Q ss_pred hHHHHHhHHHHHhhhhcccccccCC-CCCCCcccccCCCCCCC
Q 001596 14 DVELLKSDIASFASSLGLSSASAAS-SGFNDSDFRKTGPIKPQ 55 (1048)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 55 (1048)
-+++-+.-|..|-.+++..-. -+. .+|| .-|||.|..|=-
T Consensus 185 ~~~~~~~lv~~f~k~~l~~kk-C~~C~~~~-p~~rk~~~~kv~ 225 (1640)
T KOG0262|consen 185 STELKKKLVTAFLKNALSRKK-CPRCKHSN-PKLRKDGFRKVF 225 (1640)
T ss_pred hHHHHHHHHHHHHHHhhcccc-CCcccCCC-chhhccccceee
Confidence 455666778888777665222 333 3443 468888776544
No 93
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=46.73 E-value=18 Score=39.82 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=9.7
Q ss_pred cCcHHHHHHHHHHh
Q 001596 798 DLTLTAFLDKFMEK 811 (1048)
Q Consensus 798 DfTL~~FLDRFvyk 811 (1048)
.--+.+|-|||.-+
T Consensus 90 ~~~ierYSdry~~~ 103 (233)
T PF11705_consen 90 FDDIERYSDRYKKK 103 (233)
T ss_pred cccHHHHHHHHhhh
Confidence 33578888888754
No 94
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=46.53 E-value=77 Score=32.47 Aligned_cols=74 Identities=18% Similarity=0.155 Sum_probs=59.8
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhC-CCchHHHH
Q 001596 326 LALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADH-PNMKAVVI 399 (1048)
Q Consensus 326 q~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~H-P~MK~VVv 399 (1048)
+.+++.....+..---..+--+|+++...|+.=..-++.|..+|+.++.+++-.|..+|..+.+.- +.|..-|+
T Consensus 4 ~~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~eva 78 (139)
T cd03567 4 AWLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVG 78 (139)
T ss_pred HHHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 345666666665555667788999999999988889999999999999999999999999999875 44555444
No 95
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.38 E-value=8.2e+02 Score=32.14 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=51.5
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHH
Q 001596 325 VLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHL 384 (1048)
Q Consensus 325 vq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL 384 (1048)
+-++.+.+.||-+++|..|-..|-.|-.--|||...|+..+=--|.|.+..|+..|.+-.
T Consensus 145 llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsAv~AF 204 (968)
T KOG1060|consen 145 LLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSAVMAF 204 (968)
T ss_pred HHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHHHHHH
Confidence 345678899999999999999999999999999998888887778899999988877543
No 96
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=45.94 E-value=80 Score=31.76 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=52.7
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhC
Q 001596 327 ALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADH 391 (1048)
Q Consensus 327 ~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~H 391 (1048)
.+++.....+..----.+--+|+++...+..=...++.|-.+|..++..++-.|..+|..++..-
T Consensus 4 ~i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNc 68 (133)
T smart00288 4 LIDKATSPSLLEEDWELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNC 68 (133)
T ss_pred HHHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC
Confidence 34555555544444455667899999999888999999999999999999999999999999885
No 97
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=45.81 E-value=5.3e+02 Score=29.76 Aligned_cols=62 Identities=21% Similarity=0.370 Sum_probs=48.9
Q ss_pred chhhHHHHHHhhHHhhccCCCCchhhhHHHHHHHHHHHHhhccchHHHH---HHHHHHHHHHhcC
Q 001596 492 LDSRILSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNFNVAV---QALMLLDKISSKN 553 (1048)
Q Consensus 492 ~~sKLLsALLtGVNRA~Py~~~d~~ddi~e~~ldtLFrI~Hs~nfntsI---QAL~LLfqI~s~~ 553 (1048)
.+..++.|.|.|..=-+..+....+...++.+++.|-.+..+.+.++.| +||-|||.+...+
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~ 262 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDH 262 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 3578999999998777777765445677888899888888888887655 7899999998853
No 98
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=44.29 E-value=1e+02 Score=29.61 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchh----HHHHHHHhhhcCCCCCcchhhHHHHHHHHHHh
Q 001596 317 LKQRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQ----EHRLLSALVNKLGDPQNKGASNADFHLSNLLA 389 (1048)
Q Consensus 317 LK~~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQ----E~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~ 389 (1048)
+..+...+|.-+-....|+-..+|--|+..+|.+.+...+. =..+...|..-+.||+..|-+-| .+|.+||.
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence 55667778888889999999999999999999999776542 24567778888899999987766 56666664
No 99
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=44.28 E-value=83 Score=32.32 Aligned_cols=98 Identities=12% Similarity=0.079 Sum_probs=67.4
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCC-chHH-----HHH
Q 001596 327 ALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPN-MKAV-----VIN 400 (1048)
Q Consensus 327 ~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~-MK~V-----Vv~ 400 (1048)
.+++...+.+..---..+--+|+++...+.+=...++.|.-+|+.++..|+-.|..+|..+...... +..- ++.
T Consensus 4 ~iekATse~l~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~ 83 (144)
T cd03568 4 LVEKATDEKLTSENWGLILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQ 83 (144)
T ss_pred HHHHHcCccCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 4556666655444445566789999999888899999999999999999999999999999988653 3322 233
Q ss_pred HHHHhhcCCCCCcchHHHHHHHhhh
Q 001596 401 EVDSFLFRPHLGLRAKYHAVNFLSQ 425 (1048)
Q Consensus 401 EVe~lLfRpni~~rAqYYAv~fLnQ 425 (1048)
|+..++..+ .....+-.++..|-+
T Consensus 84 eL~kl~~~~-~~~~Vk~kil~li~~ 107 (144)
T cd03568 84 ELKKLINDR-VHPTVKEKLREVVKQ 107 (144)
T ss_pred HHHHHhccc-CCHHHHHHHHHHHHH
Confidence 555555554 333344444444433
No 100
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=43.77 E-value=7.7 Score=49.60 Aligned_cols=9 Identities=33% Similarity=0.298 Sum_probs=0.0
Q ss_pred ccCCCCCCC
Q 001596 961 DFDTNYFSH 969 (1048)
Q Consensus 961 ~~d~~~~~d 969 (1048)
++|+.+.++
T Consensus 691 ~fDL~~~se 699 (787)
T PF03115_consen 691 RFDLHPSSE 699 (787)
T ss_dssp ---------
T ss_pred ccccCcccc
Confidence 334443333
No 101
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=43.68 E-value=87 Score=32.18 Aligned_cols=41 Identities=32% Similarity=0.385 Sum_probs=30.8
Q ss_pred HHhhccchHHHHHHHHHHHHHHhcC------CCChhHHHHHHHhhhcC
Q 001596 529 KLVHSKNFNVAVQALMLLDKISSKN------HIVSDRFYRALYSKLLL 570 (1048)
Q Consensus 529 rI~Hs~nfntsIQAL~LLfqI~s~~------~~~sdRFYraLY~kLLd 570 (1048)
||.| .|-++.++||.||-.++..- ++.+.+|-..|.+.+..
T Consensus 45 Rl~~-~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~ 91 (144)
T cd03568 45 RLNH-KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLIND 91 (144)
T ss_pred HHcC-CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcc
Confidence 5555 78999999999999998753 46777888888763333
No 102
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=43.62 E-value=1.5e+02 Score=31.46 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHh
Q 001596 320 RYERFVLALEESSRDVLPVLKTKALKIVYALL 351 (1048)
Q Consensus 320 ~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL 351 (1048)
++.+++..|-+++-.-++.+|..|..++..|+
T Consensus 4 ~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll 35 (193)
T PF12612_consen 4 LVQQIIGGLLRQAAEKIDRVREVAGKCLQRLL 35 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666677777777777777777
No 103
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=43.41 E-value=17 Score=49.89 Aligned_cols=22 Identities=18% Similarity=-0.014 Sum_probs=16.5
Q ss_pred CCchHHHHHHHHhhchHHHHHH
Q 001596 212 QTGDIKMLAATQRSGTAADKVS 233 (1048)
Q Consensus 212 ~~Sd~kwl~ti~~sGTlsDKIa 233 (1048)
+.+..+|+--++.++-++|.|.
T Consensus 3170 ~k~~~krl~~~~~si~~~~fi~ 3191 (4600)
T COG5271 3170 KKLNMKRLVPYIASIFRRDFIW 3191 (4600)
T ss_pred hhhhhhhhHHHHHHHHhhhHHh
Confidence 3456788888888888877765
No 104
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=42.38 E-value=3.8e+02 Score=33.79 Aligned_cols=175 Identities=21% Similarity=0.194 Sum_probs=106.2
Q ss_pred hChhhhHHHHHHHHHhhhccCChhHHHHHHHHHHHHHhcCCCCCCcccccccCCCCCCCCCcccccchhHHHHHHHHHH-
Q 001596 241 DNPMANLRSLDALLGMVSSKVGKRHALTGFEALKELFVSSLLPDRKLKTLVQRPLDNLPETKDGYSLLLFWYYEEFLKQ- 319 (1048)
Q Consensus 241 esPvhnl~~L~~Ll~m~~~K~srr~al~Al~aLkdLF~~~LLPdRKLr~f~qqPl~~l~~~k~~~~~L~lWyFEd~LK~- 319 (1048)
.+|+.-.++|--|..+ ||.--+|+..|.++|.... +..+| ...+++..|-=+.|++
T Consensus 202 ~~~isqYHalGlLyq~------kr~dkma~lklv~hf~~n~-------smknq----------~a~V~lvr~~~~ll~~n 258 (898)
T COG5240 202 GNPISQYHALGLLYQS------KRTDKMAQLKLVEHFRGNA-------SMKNQ----------LAGVLLVRATVELLKEN 258 (898)
T ss_pred CChHHHHHHHHHHHHH------hcccHHHHHHHHHHhhccc-------ccccc----------hhheehHHHHHHHHHhC
Confidence 4566666666555444 3455689999999996332 11111 1135566666666664
Q ss_pred --HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcC--chhHHHHHHHhhhcCCCCCcchhhH--HHHHHHHHHhhCCC
Q 001596 320 --RYERFVLALEESSRDVLPVLKTKALKIVYALLTSK--PEQEHRLLSALVNKLGDPQNKGASN--ADFHLSNLLADHPN 393 (1048)
Q Consensus 320 --~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~k--PEQE~~LL~lLVNKLGDp~~KVASk--As~lL~~LL~~HP~ 393 (1048)
.+.+|.-.|..|.+|--+-+..-+-+.++.|-... |+.=+.-...|---|- ..+|+++ |...|.+|-...|.
T Consensus 259 ~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~--s~rv~~rFsA~Riln~lam~~P~ 336 (898)
T COG5240 259 SQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLK--STRVVLRFSAMRILNQLAMKYPQ 336 (898)
T ss_pred hHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHhhCCc
Confidence 44555556788888877777777777777765443 4422222222222222 3456665 78899999999998
Q ss_pred chHHHHHHHHHhhcCCCCCcchHHHHHHHhhhhhcccCCCchHHHHHHHHHHHHH
Q 001596 394 MKAVVINEVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFAL 448 (1048)
Q Consensus 394 MK~VVv~EVe~lLfRpni~~rAqYYAv~fLnQi~Ls~k~d~~~vA~~LI~iYF~l 448 (1048)
.-.|--.|||+++--.|- ...-|||.+|-.+ +. .+--.+|+..--+|
T Consensus 337 kv~vcN~evEsLIsd~Nr--~IstyAITtLLKT-----Gt-~e~idrLv~~I~sf 383 (898)
T COG5240 337 KVSVCNKEVESLISDENR--TISTYAITTLLKT-----GT-EETIDRLVNLIPSF 383 (898)
T ss_pred eeeecChhHHHHhhcccc--cchHHHHHHHHHc-----Cc-hhhHHHHHHHHHHH
Confidence 777766699999975543 2337899887543 11 13345566655554
No 105
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=42.32 E-value=16 Score=47.31 Aligned_cols=6 Identities=0% Similarity=0.052 Sum_probs=2.2
Q ss_pred hhhhhh
Q 001596 1017 DYQHLL 1022 (1048)
Q Consensus 1017 ~f~~~l 1022 (1048)
+|+..+
T Consensus 127 ~~~~r~ 132 (1024)
T KOG1999|consen 127 ELAKRY 132 (1024)
T ss_pred HHHHHH
Confidence 333333
No 106
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=42.07 E-value=9.4 Score=35.76 Aligned_cols=7 Identities=14% Similarity=0.354 Sum_probs=0.0
Q ss_pred Cchhhhh
Q 001596 991 GSKLGRR 997 (1048)
Q Consensus 991 ~~~~~~~ 997 (1048)
|+.++.+
T Consensus 50 ee~m~rK 56 (81)
T PF14812_consen 50 EEPMPRK 56 (81)
T ss_dssp -------
T ss_pred ccccccc
Confidence 3445543
No 107
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=41.94 E-value=17 Score=44.40 Aligned_cols=6 Identities=33% Similarity=0.789 Sum_probs=2.5
Q ss_pred CCcccc
Q 001596 1009 ATPFAS 1014 (1048)
Q Consensus 1009 ~s~Fas 1014 (1048)
|=||-+
T Consensus 299 NL~fD~ 304 (678)
T KOG0127|consen 299 NLPFDT 304 (678)
T ss_pred cCCccc
Confidence 344443
No 108
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=41.86 E-value=6.5 Score=50.93 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 001596 435 PKVAKRLIDVYFALFKVLIT 454 (1048)
Q Consensus 435 ~~vA~~LI~iYF~lFk~lv~ 454 (1048)
++||..|++..+.=|+..+.
T Consensus 493 ~dvat~lv~~L~~eFr~~~h 512 (1128)
T KOG2051|consen 493 PDVATELVTMLRKEFRSHLH 512 (1128)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 47888898888888887774
No 109
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=40.94 E-value=5.2e+02 Score=31.86 Aligned_cols=109 Identities=19% Similarity=0.320 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCchHHH
Q 001596 320 RYERFVLALEESSRD-VLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVV 398 (1048)
Q Consensus 320 ~Y~~Fvq~Le~ls~D-~l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~VV 398 (1048)
+|.+.|..|-+.+.| .-+.+|.-||+++-++|++.|-- |++ .+---+.++|..|-+...=|
T Consensus 326 ~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~-------l~D-----------stE~ai~K~Leaa~ds~~~v 387 (516)
T KOG2956|consen 326 HFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR-------LFD-----------STEIAICKVLEAAKDSQDEV 387 (516)
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh-------hhc-----------hHHHHHHHHHHHHhCCchhH
Confidence 355555555444555 77889999999999999988741 122 23334555666665554433
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHhhhhhcccCCCchHHHHHHHHHHHHHHH
Q 001596 399 INEVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFK 450 (1048)
Q Consensus 399 v~EVe~lLfRpni~~rAqYYAv~fLnQi~Ls~k~d~~~vA~~LI~iYF~lFk 450 (1048)
+++.++-+.|- ...+--..+|..+.+++++ .|+ ..+-.+|+.--.+|.
T Consensus 388 ~~~Aeed~~~~-las~~P~~~I~~i~~~Ilt--~D~-~~~~~~iKm~Tkl~e 435 (516)
T KOG2956|consen 388 MRVAEEDCLTT-LASHLPLQCIVNISPLILT--ADE-PRAVAVIKMLTKLFE 435 (516)
T ss_pred HHHHHHHHHHH-HHhhCchhHHHHHhhHHhc--Ccc-hHHHHHHHHHHHHHh
Confidence 44333221110 0223335677777788887 232 466667766666664
No 110
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=40.51 E-value=1.2e+02 Score=33.59 Aligned_cols=80 Identities=15% Similarity=0.212 Sum_probs=57.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHH
Q 001596 306 SLLLFWYYEEFLKQRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLS 385 (1048)
Q Consensus 306 ~~L~lWyFEd~LK~~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~ 385 (1048)
.++.-...++.+=.-|+.||..|..-.+.-..--+.+..++++.|+..+ ....|+.+++.-| +..+.+.+-.+|.
T Consensus 128 ~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl~lLe~~~if~~l~~i~~~~--~~~~l~klil~~L---DY~~~~~~R~iLs 202 (226)
T PF14666_consen 128 PLFSPQRLSTTLSRGYFLFIGVLSSTPNGLKLLERWNIFTMLYHIFSLS--SRDDLLKLILSSL---DYSVDGHPRIILS 202 (226)
T ss_pred cccCHHHHHhhHHHHHHHHHHHHhCChhHHHHHHHCCHHHHHHHHHccC--chHHHHHHHHhhC---CCCCccHHHHHHH
Confidence 4677788888999999999999976666554555667888888888775 3377888888877 4555555555555
Q ss_pred HHHhh
Q 001596 386 NLLAD 390 (1048)
Q Consensus 386 ~LL~~ 390 (1048)
+.|..
T Consensus 203 KaLt~ 207 (226)
T PF14666_consen 203 KALTS 207 (226)
T ss_pred HHHhc
Confidence 55443
No 111
>PF15574 Imm28: Immunity protein 28
Probab=39.93 E-value=91 Score=31.50 Aligned_cols=86 Identities=15% Similarity=0.312 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchh--------HHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhh
Q 001596 319 QRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQ--------EHRLLSALVNKLGDPQNKGASNADFHLSNLLAD 390 (1048)
Q Consensus 319 ~~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQ--------E~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~ 390 (1048)
..-.+|++.+-.-..|+ .-|.-.-.++|..|..+..+ ...++++++.+||=+...-+..+.+++..-=..
T Consensus 7 ~~~~k~l~~i~~d~~de--~~rqv~a~Y~FGmln~la~e~~~sp~diqa~mI~ili~~l~ys~~~A~~~~qf~I~~Tdk~ 84 (123)
T PF15574_consen 7 NMVNKFLRLITIDLGDE--QERQVLAAYIFGMLNGLAHEESISPTDIQAAMIRILIEKLGYSTEAAAQFCQFVIDCTDKE 84 (123)
T ss_pred HHHHHHHHHHHhhhCCH--HHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccc
Confidence 34455666655555555 44666667888888766444 578999999999998888888888888888877
Q ss_pred -CCCchHHHHHHHHHhh
Q 001596 391 -HPNMKAVVINEVDSFL 406 (1048)
Q Consensus 391 -HP~MK~VVv~EVe~lL 406 (1048)
||-|-.||-|=++.+.
T Consensus 85 fhPT~~aIIHRGiegy~ 101 (123)
T PF15574_consen 85 FHPTMYAIIHRGIEGYY 101 (123)
T ss_pred cCccHHHHHHcchHHHH
Confidence 9999999999988755
No 112
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=39.16 E-value=3.7e+02 Score=30.45 Aligned_cols=129 Identities=22% Similarity=0.241 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCch-------------hHHHHHHHhhhcCCCCCcchhhHHHHHH
Q 001596 318 KQRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPE-------------QEHRLLSALVNKLGDPQNKGASNADFHL 384 (1048)
Q Consensus 318 K~~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPE-------------QE~~LL~lLVNKLGDp~~KVASkAs~lL 384 (1048)
++.+.-|++.++. + -+.+|..|++++++||....- ....++.+++.-|.+-+..+-+.|.--|
T Consensus 63 ~~~l~l~~~~~~~---~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl 138 (298)
T PF12719_consen 63 KEHLPLFLQALQK---D-DEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGL 138 (298)
T ss_pred HHHHHHHHHHHHh---C-CHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3334445555533 3 678999999999999976531 1235666666666666656666666666
Q ss_pred HHHHhhCCCch-HHHHHHHHHhhcCCCCCc--chHHHHHHHhhhhhcccCCCchHHHHHHHHHHHHHHHHHHh
Q 001596 385 SNLLADHPNMK-AVVINEVDSFLFRPHLGL--RAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLIT 454 (1048)
Q Consensus 385 ~~LL~~HP~MK-~VVv~EVe~lLfRpni~~--rAqYYAv~fLnQi~Ls~k~d~~~vA~~LI~iYF~lFk~lv~ 454 (1048)
.+|+-.+--.- ..|+..+--+.|.|.... +-+=.-..|+--...++. .=...+.+++...|+.+..
T Consensus 139 ~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~----~~Q~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 139 CKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSP----ENQERLAEAFLPTLRTLSN 207 (298)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHHHh
Confidence 77666655554 455555555556665433 222222334444444432 1124466666666666664
No 113
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=38.52 E-value=53 Score=40.29 Aligned_cols=58 Identities=22% Similarity=0.409 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHhhhcCccccCCccHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Q 001596 537 NVAVQALMLLDKISSKNHIVSDRFYRALYSKLLLPAAMNSSKAEMFIGLLHRAMKNDVNLKRVAAFSKRLLQVV 610 (1048)
Q Consensus 537 ntsIQAL~LLfqI~s~~~~~sdRFYraLY~kLLdP~l~~SSk~~mfLnLL~ksLK~D~~~~RVaAFVKRLLQva 610 (1048)
++.+|+ ++|++...+.+.+..||++||+.|+.-.- -.+-+-||.++-+ .||.|+++.+
T Consensus 463 e~~~~~--~vy~~a~~~~~~~~~~F~~~Y~vliGk~~--GPRlg~Fla~lg~------------dfv~~rir~~ 520 (521)
T COG1384 463 EVELHN--EVYEVAKKKGILPRAFFQALYRVLIGKER--GPRLGSFLALLGV------------DFVIRRIRLA 520 (521)
T ss_pred hHHHHH--HHHHHHHhcCCCHHHHHHHHHHHHhCCCC--CccHHHHHHHhCh------------HHHHHHHHhc
Confidence 445554 58999999999999999999998886321 2345667766532 3666666554
No 114
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=38.18 E-value=28 Score=38.28 Aligned_cols=13 Identities=8% Similarity=-0.115 Sum_probs=5.3
Q ss_pred CCccCCCCcchhH
Q 001596 751 EPSYCNADHVSWW 763 (1048)
Q Consensus 751 dP~yanA~~S~LW 763 (1048)
.|.-.+.....+.
T Consensus 43 ~~~~~t~~E~~~v 55 (233)
T PF11705_consen 43 VPLPLTEEERYLV 55 (233)
T ss_pred CCCCCCHHHHHHH
Confidence 4444444443333
No 115
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=38.00 E-value=57 Score=24.45 Aligned_cols=28 Identities=18% Similarity=0.137 Sum_probs=20.9
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHhh
Q 001596 325 VLALEESSRDVLPVLKTKALKIVYALLT 352 (1048)
Q Consensus 325 vq~Le~ls~D~l~~~R~kal~~i~~LL~ 352 (1048)
+..|-.++.|+.+.+|..|+.++..+..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 5567778888888888888888877754
No 116
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=37.10 E-value=2e+02 Score=29.04 Aligned_cols=32 Identities=25% Similarity=0.252 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHhhcC
Q 001596 323 RFVLALEESSRDVLPVLKTKALKIVYALLTSK 354 (1048)
Q Consensus 323 ~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~k 354 (1048)
.++..|-+=+++.-+++|-|||++|-.|+..-
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G 69 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG 69 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC
Confidence 34444433344444666666666555555433
No 117
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=36.68 E-value=29 Score=34.84 Aligned_cols=73 Identities=16% Similarity=0.276 Sum_probs=52.0
Q ss_pred chhHHHHHHHhhhcCCC-CCcchhhHHHHHHHHHHhhCCCchHHHHH-----HHHHhhcCCCCCcchHHHHHHHhhhhhc
Q 001596 355 PEQEHRLLSALVNKLGD-PQNKGASNADFHLSNLLADHPNMKAVVIN-----EVDSFLFRPHLGLRAKYHAVNFLSQIRL 428 (1048)
Q Consensus 355 PEQE~~LL~lLVNKLGD-p~~KVASkAs~lL~~LL~~HP~MK~VVv~-----EVe~lLfRpni~~rAqYYAv~fLnQi~L 428 (1048)
-|....||+.|++=|.. .+..+.+-|.|=|.++++.||+-+.||-+ -|-++|- +.+...+|.|+..+-.+++
T Consensus 38 ~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~--h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 38 EENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMN--HEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp SSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS---SSHHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhc--CCCHHHHHHHHHHHHHHHH
Confidence 35567777777777733 35677778999999999999999998743 2334554 3457788999998887776
Q ss_pred c
Q 001596 429 S 429 (1048)
Q Consensus 429 s 429 (1048)
.
T Consensus 116 ~ 116 (119)
T PF11698_consen 116 N 116 (119)
T ss_dssp H
T ss_pred h
Confidence 4
No 118
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=34.85 E-value=53 Score=31.74 Aligned_cols=66 Identities=8% Similarity=0.023 Sum_probs=53.1
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhC
Q 001596 326 LALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADH 391 (1048)
Q Consensus 326 q~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~H 391 (1048)
+.+++...+.+..--...+.-++++....|+.=....+.|..+|++++.++.-+|.++|..|++.-
T Consensus 3 ~~v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~ 68 (115)
T cd00197 3 KTVEKATSNENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNC 68 (115)
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHc
Confidence 345667677666666677888888888877776789999999999999999999999999988865
No 119
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=34.47 E-value=3.4e+02 Score=31.75 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhh----CCCchHHHHHHHHHhhcCCCCCcchHHHHHHHhhhh
Q 001596 379 NADFHLSNLLAD----HPNMKAVVINEVDSFLFRPHLGLRAKYHAVNFLSQI 426 (1048)
Q Consensus 379 kAs~lL~~LL~~----HP~MK~VVv~EVe~lLfRpni~~rAqYYAv~fLnQi 426 (1048)
.|..+|..+.++ .|+|+.-|++-+.+.|+.|....-+.|=||+-|..+
T Consensus 287 ~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 287 YAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 455555555544 688999999999999999998888899999988765
No 120
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=32.98 E-value=6.6e+02 Score=28.02 Aligned_cols=117 Identities=12% Similarity=0.139 Sum_probs=71.6
Q ss_pred chhhhHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhcC-----CCChhHHHHHHHhhhcCc-ccc--CCccHHHHHHH
Q 001596 514 NEADDIIEVQTPMLFKLVHSKNFNVAVQALMLLDKISSKN-----HIVSDRFYRALYSKLLLP-AAM--NSSKAEMFIGL 585 (1048)
Q Consensus 514 d~~ddi~e~~ldtLFrI~Hs~nfntsIQAL~LLfqI~s~~-----~~~sdRFYraLY~kLLdP-~l~--~SSk~~mfLnL 585 (1048)
+.+..+-+..+..|..+-|.+-|..+-+++.-+-+.+-.. +..+..++..+-..+-.. .-. .+..-+=+-.+
T Consensus 92 ~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~ 171 (255)
T PF10350_consen 92 DQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFL 171 (255)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHHHHHHHhcccccccccccccCcHHHH
Confidence 3345566777888999999999999988888766665532 234677888888777766 221 12222212223
Q ss_pred HHHHHhcCccH--HHHHHHHHHHHHHHhcCCch--------hHHHHHHHHHHHHH
Q 001596 586 LHRAMKNDVNL--KRVAAFSKRLLQVVLQQPPQ--------YACGCLFLLSEVLK 630 (1048)
Q Consensus 586 L~ksLK~D~~~--~RVaAFVKRLLQval~~pP~--------facg~L~LIseLLk 630 (1048)
+.-.|.+.... .-+.-.+++||++|-.-... ..+=+|=++..|++
T Consensus 172 i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ 226 (255)
T PF10350_consen 172 ILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFR 226 (255)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHh
Confidence 33334555433 55777789999998654331 34445555555554
No 121
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=32.93 E-value=44 Score=29.82 Aligned_cols=56 Identities=23% Similarity=0.248 Sum_probs=37.3
Q ss_pred HHHHHHh-cCchHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHH
Q 001596 326 LALEESS-RDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNL 387 (1048)
Q Consensus 326 q~Le~ls-~D~l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~L 387 (1048)
..|-+.+ +|+-+.+|..|+.++..+ ..| ..+..|+.-|.|++..|...|..-|.++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~--~~~----~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL--GDP----EAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC--THH----HHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc--CCH----hHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3454444 788899999888887733 122 4455555555788888877777777655
No 122
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=31.96 E-value=40 Score=43.52 Aligned_cols=6 Identities=17% Similarity=0.025 Sum_probs=2.3
Q ss_pred ChHHHH
Q 001596 904 DNEEID 909 (1048)
Q Consensus 904 ddeE~~ 909 (1048)
.-|+++
T Consensus 10 ~~e~~~ 15 (895)
T KOG2076|consen 10 ISEQFM 15 (895)
T ss_pred hHHHHc
Confidence 334443
No 123
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.89 E-value=22 Score=46.07 Aligned_cols=17 Identities=41% Similarity=0.470 Sum_probs=10.4
Q ss_pred CCcchHHHHHHHhhhhh
Q 001596 411 LGLRAKYHAVNFLSQIR 427 (1048)
Q Consensus 411 i~~rAqYYAv~fLnQi~ 427 (1048)
++.|.-||+++||+|.+
T Consensus 316 ls~rvl~~~l~fl~~~V 332 (1010)
T KOG1991|consen 316 LSDRVLYYLLNFLEQCV 332 (1010)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 35566666666666665
No 124
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=31.37 E-value=54 Score=40.22 Aligned_cols=9 Identities=33% Similarity=0.353 Sum_probs=5.6
Q ss_pred CCcccchhh
Q 001596 1009 ATPFASLED 1017 (1048)
Q Consensus 1009 ~s~Fas~e~ 1017 (1048)
+.+|+|-+.
T Consensus 376 a~e~ssDs~ 384 (555)
T KOG2393|consen 376 ATEYSSDSS 384 (555)
T ss_pred ccccCCCcc
Confidence 667776544
No 125
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=30.98 E-value=46 Score=44.36 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=16.1
Q ss_pred cCCCCccCcHHHHHHHHHHhCCC
Q 001596 792 NGNPLSDLTLTAFLDKFMEKKPK 814 (1048)
Q Consensus 792 ~GdPL~DfTL~~FLDRFvyknPK 814 (1048)
-|.|-..+||-.| +|+=|-.+
T Consensus 1164 IGEPSTQMTLNTF--HfAGrGem 1184 (1640)
T KOG0262|consen 1164 IGEPSTQMTLNTF--HFAGRGEM 1184 (1640)
T ss_pred cCCCcceeehhhe--eeccccce
Confidence 4788888898888 77766655
No 126
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=30.81 E-value=6.5e+02 Score=30.13 Aligned_cols=22 Identities=18% Similarity=0.462 Sum_probs=16.4
Q ss_pred hhhHHHHHHhhHHhhccCCCCc
Q 001596 493 DSRILSALLMGVNRAFPYVSSN 514 (1048)
Q Consensus 493 ~sKLLsALLtGVNRA~Py~~~d 514 (1048)
+..+...++.|+=|..|..++.
T Consensus 249 dp~l~~~~i~~llk~WP~t~s~ 270 (409)
T PF01603_consen 249 DPSLAEPVIKGLLKHWPKTNSQ 270 (409)
T ss_dssp -GGGHHHHHHHHHHHS-SS-HH
T ss_pred CchhHHHHHHHHHHhCCCCCch
Confidence 6788889999999999988763
No 127
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.14 E-value=9.2e+02 Score=31.62 Aligned_cols=56 Identities=25% Similarity=0.343 Sum_probs=34.0
Q ss_pred hhChhh---hHHHHHHHHHhhhc--cCChhHHHHHHHHHHHHHhcCCCCCCcccccccCCC
Q 001596 240 GDNPMA---NLRSLDALLGMVSS--KVGKRHALTGFEALKELFVSSLLPDRKLKTLVQRPL 295 (1048)
Q Consensus 240 QesPvh---nl~~L~~Ll~m~~~--K~srr~al~Al~aLkdLF~~~LLPdRKLr~f~qqPl 295 (1048)
.++||. ..+.|..|+.|... +=+..+|-.+.-++..||.+-=.+.|+-.|.....+
T Consensus 31 nespvn~r~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikel 91 (865)
T KOG1078|consen 31 NESPVNPRKCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKEL 91 (865)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhc
Confidence 344543 35667777777642 335677888888999999533233566665554433
No 128
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=28.89 E-value=47 Score=42.25 Aligned_cols=11 Identities=36% Similarity=0.199 Sum_probs=5.6
Q ss_pred HHHHHhhhhhcc
Q 001596 418 HAVNFLSQIRLS 429 (1048)
Q Consensus 418 YAv~fLnQi~Ls 429 (1048)
||+. |..++|-
T Consensus 356 yaL~-l~DTvlv 366 (960)
T KOG1189|consen 356 YALL-LSDTVLV 366 (960)
T ss_pred hhhh-ccceeee
Confidence 6654 4444443
No 129
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=28.76 E-value=2.7e+02 Score=30.19 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCC
Q 001596 320 RYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPN 393 (1048)
Q Consensus 320 ~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~ 393 (1048)
.+..+...|..|+.+.-..+|..|+.+.+.+.. . .....|+.++.+-+||++.=|---....|.++-..+|.
T Consensus 112 ~~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~-~-~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~ 183 (208)
T cd07064 112 DYPEFEPVMDEWSTDENFWLRRTAILHQLKYKE-K-TDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPD 183 (208)
T ss_pred CChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-c-cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHH
Confidence 355667889999999999999999876444333 2 23457788899999999865533335677777777653
No 130
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=28.75 E-value=67 Score=38.66 Aligned_cols=12 Identities=25% Similarity=0.213 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHH
Q 001596 619 CGCLFLLSEVLK 630 (1048)
Q Consensus 619 cg~L~LIseLLk 630 (1048)
.+-.+|++.|++
T Consensus 59 ~a~~~l~~kLiK 70 (432)
T PF09073_consen 59 FAKRHLRSKLIK 70 (432)
T ss_pred HHHHHHHHHHHH
Confidence 344556666666
No 131
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=28.62 E-value=32 Score=42.74 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=6.4
Q ss_pred hhchHHHHHHH
Q 001596 224 RSGTAADKVSA 234 (1048)
Q Consensus 224 ~sGTlsDKIaA 234 (1048)
+-|.|+|+|..
T Consensus 208 t~~KlsD~mes 218 (1001)
T COG5406 208 THGKLSDLMES 218 (1001)
T ss_pred ccchHHHHhhh
Confidence 33666666654
No 132
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=28.53 E-value=1.3e+02 Score=30.35 Aligned_cols=23 Identities=43% Similarity=0.550 Sum_probs=20.0
Q ss_pred HHhhccchHHHHHHHHHHHHHHhc
Q 001596 529 KLVHSKNFNVAVQALMLLDKISSK 552 (1048)
Q Consensus 529 rI~Hs~nfntsIQAL~LLfqI~s~ 552 (1048)
||.| .|-++.++||.||-.++..
T Consensus 50 rl~~-~~~~vq~~aL~lld~lvkN 72 (140)
T PF00790_consen 50 RLKH-GNPNVQLLALTLLDALVKN 72 (140)
T ss_dssp HHTT-SSHHHHHHHHHHHHHHHHH
T ss_pred HHhC-CCHHHHHHHHHHHHHHHHc
Confidence 5667 8999999999999999874
No 133
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=28.17 E-value=47 Score=38.62 Aligned_cols=11 Identities=27% Similarity=0.389 Sum_probs=6.3
Q ss_pred cCchHHHHHHH
Q 001596 772 VHPSVSTMAGT 782 (1048)
Q Consensus 772 yHPSVa~fA~~ 782 (1048)
.||++..+-+.
T Consensus 124 ~~P~~q~~~N~ 134 (348)
T KOG2652|consen 124 QHPSQQVNVNS 134 (348)
T ss_pred cCccccccccc
Confidence 56666655553
No 134
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.16 E-value=27 Score=45.32 Aligned_cols=28 Identities=18% Similarity=0.244 Sum_probs=19.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 001596 306 SLLLFWYYEEFLKQRYERFVLALEESSR 333 (1048)
Q Consensus 306 ~~L~lWyFEd~LK~~Y~~Fvq~Le~ls~ 333 (1048)
+....||+....-..|..|++.|+.+..
T Consensus 285 ~~Fa~~f~~n~~~~ile~~lk~l~~~~~ 312 (1010)
T KOG1991|consen 285 KEFAQMFLKNFAQGILEVFLKILEQWRQ 312 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777777777777655
No 135
>PHA02664 hypothetical protein; Provisional
Probab=28.14 E-value=53 Score=37.83 Aligned_cols=11 Identities=27% Similarity=0.459 Sum_probs=5.3
Q ss_pred hhHHhhccCCC
Q 001596 502 MGVNRAFPYVS 512 (1048)
Q Consensus 502 tGVNRA~Py~~ 512 (1048)
|-|.|-.+|+.
T Consensus 76 trvhrnvhfvq 86 (534)
T PHA02664 76 TRVHRNVHFVQ 86 (534)
T ss_pred hhhhhccceee
Confidence 33445555554
No 136
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.03 E-value=2.9e+02 Score=30.45 Aligned_cols=91 Identities=22% Similarity=0.263 Sum_probs=65.4
Q ss_pred HHHHHHHHhhhccCChhHHHHHHHHHHHHHhcCCCCCCcccccccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 001596 248 RSLDALLGMVSSKVGKRHALTGFEALKELFVSSLLPDRKLKTLVQRPLDNLPETKDGYSLLLFWYYEEFLKQRYERFVLA 327 (1048)
Q Consensus 248 ~~L~~Ll~m~~~K~srr~al~Al~aLkdLF~~~LLPdRKLr~f~qqPl~~l~~~k~~~~~L~lWyFEd~LK~~Y~~Fvq~ 327 (1048)
+.|+.++..|.+. -.++.++.....-|+..++| -+|.+-.+ ....+..+++-.|=+.|+..+...+..
T Consensus 15 ~Wl~~~~~~~~k~---~~~~~~~e~~~nsfl~~~~p----~~~~s~~v-----idqdYT~~al~~f~~~l~e~~~~ll~~ 82 (214)
T cd07609 15 KWLDGYVSSTKKL---YSSLDELERVINSFLSHLLP----PLLVSGGV-----IDQDYTPLALKRFGDGLKDFWGGVLSA 82 (214)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCC----ccccccch-----hCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777787533 23788999999999999999 22222111 122345688889999999999888888
Q ss_pred HH---HHhcCchHHHHHHHHHHHHHH
Q 001596 328 LE---ESSRDVLPVLKTKALKIVYAL 350 (1048)
Q Consensus 328 Le---~ls~D~l~~~R~kal~~i~~L 350 (1048)
+. ....+|+..++...|+-.-+.
T Consensus 83 ~~~~~~~~~~pL~~f~k~~i~~~Ke~ 108 (214)
T cd07609 83 LKGNDSLILDPLRSFVKSDIRPYKEL 108 (214)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 76 777889999988888855443
No 137
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=26.31 E-value=45 Score=42.41 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHH-HhcCchHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCch
Q 001596 317 LKQRYERFVLALEE-SSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMK 395 (1048)
Q Consensus 317 LK~~Y~~Fvq~Le~-ls~D~l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK 395 (1048)
|=-+|..|...+.+ ++-||-.. +.-.|+.|-.- || .+|.+|. |-.+++.-=...|.-+-...|.|-
T Consensus 236 ~G~RynsYCSNv~RT~Lidpsse-----mq~nY~fLl~a--qe-~il~~lr-----pG~ki~dVY~~~l~~v~k~~Pel~ 302 (960)
T KOG1189|consen 236 LGIRYNSYCSNVSRTYLIDPSSE-----MQENYEFLLAA--QE-EILKLLR-----PGTKIGDVYEKALDYVEKNKPELV 302 (960)
T ss_pred ccchhhhhhccccceeeecchHH-----HHHHHHHHHHH--HH-HHHHhhc-----CCCchhHHHHHHHHHHHhcCcchh
Confidence 34567777666643 34454322 22233333222 22 3444442 444554444445555666677776
Q ss_pred HHHHHH
Q 001596 396 AVVINE 401 (1048)
Q Consensus 396 ~VVv~E 401 (1048)
.-+++-
T Consensus 303 ~~~~k~ 308 (960)
T KOG1189|consen 303 PNFTKN 308 (960)
T ss_pred hhhhhh
Confidence 655554
No 138
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.28 E-value=2e+03 Score=30.77 Aligned_cols=37 Identities=14% Similarity=0.328 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCch
Q 001596 320 RYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPE 356 (1048)
Q Consensus 320 ~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPE 356 (1048)
.|+-++-.|..+..+....+|.+++..++++|..+++
T Consensus 1171 ~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~~~g~ 1207 (1514)
T KOG0929|consen 1171 GWFPMLFQLSKIINDYRLEVRKRALEVLFDILKEHGD 1207 (1514)
T ss_pred eeehhHhhhhHHhhccHHHHHHHHHHHHHHHHHhhhh
Confidence 3566666777777799999999999999999999877
No 139
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=25.77 E-value=1.1e+02 Score=30.25 Aligned_cols=66 Identities=23% Similarity=0.314 Sum_probs=50.9
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHhhChhhhHHHHHHHHHhhhccCChh--HHHHHHHHHHHHHhcCCCC
Q 001596 216 IKMLAATQRSGTAADKVSAFSVIVGDNPMANLRSLDALLGMVSSKVGKR--HALTGFEALKELFVSSLLP 283 (1048)
Q Consensus 216 ~kwl~ti~~sGTlsDKIaAltllVQesPvhnl~~L~~Ll~m~~~K~srr--~al~Al~aLkdLF~~~LLP 283 (1048)
..|+ .+....+..+++.++..+++.-|..|...|..|+.++.. -... ...|....|.-+|...|++
T Consensus 78 ~~~~-~~~~~~~~~~~~~~~~~~l~~lp~~~~~~l~~l~~~l~~-v~~~~~~n~m~~~~La~~f~P~l~~ 145 (151)
T PF00620_consen 78 DKFI-AASKSADEEEQIEAIRSLLQSLPPSNRSLLKYLIELLSK-VSDNSEINKMTAENLAIIFAPSLFR 145 (151)
T ss_dssp HHHH-HHHTSSSHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHh-hhhccchhhHHHHHHHHhhhccccccceeehhcccchhh-hhcccccccCCHHHHHHHHHhHcCC
Confidence 3566 466778899999999999999999999999999988642 2222 2468899999999877665
No 140
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=25.50 E-value=1.1e+03 Score=27.25 Aligned_cols=98 Identities=12% Similarity=0.195 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCchHHHHH
Q 001596 321 YERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVVIN 400 (1048)
Q Consensus 321 Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~VVv~ 400 (1048)
+.++.+.|+.+..-. ...|..+|..++.+|..+.=.+. +. .-+..++.
T Consensus 42 e~~L~~~Id~l~eK~-~~~Re~aL~~l~~~l~~~~~~d~----------------------------v~---~~~~tL~~ 89 (309)
T PF05004_consen 42 EDKLKEAIDLLTEKS-SSTREAALEALIRALSSRYLPDF----------------------------VE---DRRETLLD 89 (309)
T ss_pred HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhcccHHH----------------------------HH---HHHHHHHH
Confidence 345777777776444 67888888888888877642221 00 11223445
Q ss_pred HHHHhhcCCCCCcchHHHHHHHhhhhhcccCCCchHHHHHHHHHHHHHHHHHHh
Q 001596 401 EVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLIT 454 (1048)
Q Consensus 401 EVe~lLfRpni~~rAqYYAv~fLnQi~Ls~k~d~~~vA~~LI~iYF~lFk~lv~ 454 (1048)
-+++.|-+.. + .-+..|+..+.=+.++-.. + .-+..+++..+..++.++.
T Consensus 90 ~~~k~lkkg~-~-~E~~lA~~~l~Ll~ltlg~-g-~~~~ei~~~~~~~L~~~l~ 139 (309)
T PF05004_consen 90 ALLKSLKKGK-S-EEQALAARALALLALTLGA-G-EDSEEIFEELKPVLKRILT 139 (309)
T ss_pred HHHHHhccCC-H-HHHHHHHHHHHHHhhhcCC-C-ccHHHHHHHHHHHHHHHHh
Confidence 5555554433 2 5566665555555554220 1 1255666666666666664
No 141
>PF05477 SURF2: Surfeit locus protein 2 (SURF2); InterPro: IPR008833 Surfeit locus protein 2 is part of a group of at least six sequence unrelated genes (Surf-1 to Surf-6). The six Surfeit genes have been classified as housekeeping genes, being expressed in all tissue types tested and not containing a TATA box in their promoter region. The exact function of SURF2 is unknown [].
Probab=25.15 E-value=1.2e+02 Score=34.04 Aligned_cols=11 Identities=36% Similarity=0.570 Sum_probs=7.0
Q ss_pred HHHHHHhCCcc
Q 001596 625 LSEVLKARPPL 635 (1048)
Q Consensus 625 IseLLk~~P~L 635 (1048)
|..||+.||.|
T Consensus 8 v~~~L~~~p~l 18 (244)
T PF05477_consen 8 VQAFLKSHPFL 18 (244)
T ss_pred HHHHHhcCCce
Confidence 45666777765
No 142
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.10 E-value=2.8e+02 Score=37.27 Aligned_cols=107 Identities=18% Similarity=0.195 Sum_probs=63.6
Q ss_pred hhhHHHHHHhhHHhhccCCCCchhhhHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHhcCCCChhHHHHHHHhhhcCc
Q 001596 493 DSRILSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKN-FNVAVQALMLLDKISSKNHIVSDRFYRALYSKLLLP 571 (1048)
Q Consensus 493 ~sKLLsALLtGVNRA~Py~~~d~~ddi~e~~ldtLFrI~Hs~n-fntsIQAL~LLfqI~s~~~~~sdRFYraLY~kLLdP 571 (1048)
++++++|.|+-++|+...++... |++.-+ ..--+++-.| -...+.||..|-+|++......+|.|+.+|.....-
T Consensus 203 ~~~~~~atl~tl~~fl~wip~~~---I~~tn~-l~~~l~~~ln~~~~r~~al~CL~ei~s~~~~~~~~~~~~~~~~~~~~ 278 (1041)
T KOG2020|consen 203 NSELLSATLETLLRFLEWIPLGY---IFETNI-LELLLNKFLNAPELRNNALSCLTELLSRKRSIYERKTVPMFNLTIYQ 278 (1041)
T ss_pred hhHHHHHHHHHHHHHhhcccHHH---HHHhhh-HHHHHHhccchHHHHHHHHHHHHHHHhccccchhHHhHHHHHHHHHH
Confidence 44599999999999999998753 444332 1111233332 234555666667788877668888888888633221
Q ss_pred cccCCccHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHH
Q 001596 572 AAMNSSKAEMFIGLLHRAMKND-VNLKRVAAFSKRLLQVV 610 (1048)
Q Consensus 572 ~l~~SSk~~mfLnLL~ksLK~D-~~~~RVaAFVKRLLQva 610 (1048)
.+.++.++-....... ....+ .+|++|+.|+-
T Consensus 279 ------l~~i~~~l~~~~~~~~~~~~dq-~~fi~~l~~~l 311 (1041)
T KOG2020|consen 279 ------LRSIPQDLDIPEVYSSLSDEDQ-DSFIEKLAQFL 311 (1041)
T ss_pred ------HHHhhhhhchhhhhhcccHhHH-HHHHHHHHHHH
Confidence 1133433332222222 34455 78888888863
No 143
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=24.97 E-value=2.3e+02 Score=29.00 Aligned_cols=42 Identities=31% Similarity=0.413 Sum_probs=30.2
Q ss_pred HHHhhccchHHHHHHHHHHHHHHhcC------CCChhHHHHHHHhhhcCc
Q 001596 528 FKLVHSKNFNVAVQALMLLDKISSKN------HIVSDRFYRALYSKLLLP 571 (1048)
Q Consensus 528 FrI~Hs~nfntsIQAL~LLfqI~s~~------~~~sdRFYraLY~kLLdP 571 (1048)
-||.| .|-++.+.||.||-.++..- ++.+.+|-..|.. |+.+
T Consensus 48 krl~~-~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~-l~~~ 95 (142)
T cd03569 48 KRLLS-KNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKD-LIKT 95 (142)
T ss_pred HHHcC-CChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHH-HHcc
Confidence 35656 88999999999999888753 3566677777765 4443
No 144
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=24.92 E-value=1.1e+02 Score=25.03 Aligned_cols=36 Identities=19% Similarity=0.481 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCch
Q 001596 319 QRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPE 356 (1048)
Q Consensus 319 ~~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPE 356 (1048)
..|.+||++|....+..+. +...+..+..||...|+
T Consensus 2 ~~Y~~FL~il~~y~~~~~~--~~~v~~~v~~Ll~~hpd 37 (47)
T PF02671_consen 2 EVYNEFLKILNDYKKGRIS--RSEVIEEVSELLRGHPD 37 (47)
T ss_dssp HHHHHHHHHHHHHHCTCSC--HHHHHHHHHHHTTT-HH
T ss_pred hHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHccCHH
Confidence 4799999999999886543 33467778889999886
No 145
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=24.85 E-value=2.1e+02 Score=36.11 Aligned_cols=68 Identities=19% Similarity=0.273 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHH-hcCchHHHHHHHHHHHHHHhhcCchhH-HHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCchH
Q 001596 319 QRYERFVLALEES-SRDVLPVLKTKALKIVYALLTSKPEQE-HRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKA 396 (1048)
Q Consensus 319 ~~Y~~Fvq~Le~l-s~D~l~~~R~kal~~i~~LL~~kPEQE-~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~ 396 (1048)
..|..|+|.|-.. +.-|.+.+|..+++++..+|...|++. ..+|+-+... ..|++||.
T Consensus 437 ~~~~~~~q~L~~i~~~~p~~~lR~~~~~ll~~iL~~~p~~~rf~~i~dlLe~--------------------c~~~~~k~ 496 (633)
T PF08568_consen 437 EVFMQFLQALLLISVYCPSPELRKIAFTLLTRILHLFPEETRFKFIRDLLEN--------------------CPFESLKA 496 (633)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCcHhHHHHHHHHHhc--------------------CCCHhHHH
Confidence 6789999998665 578899999999999999999999755 2233332221 23777887
Q ss_pred HHHHHHHHhh
Q 001596 397 VVINEVDSFL 406 (1048)
Q Consensus 397 VVv~EVe~lL 406 (1048)
.++.=+...+
T Consensus 497 ~~I~~lKd~i 506 (633)
T PF08568_consen 497 SAIGWLKDEI 506 (633)
T ss_pred HHHHHHHHHH
Confidence 7666555444
No 146
>PF05503 Pox_G7: Poxvirus G7-like ; InterPro: IPR008787 This family of proteins which include vaccinia virus G7L and fowlpox virus FPV120 are associated with the intracellualar mature virus particle. The function of this family of proteins is not known.
Probab=24.34 E-value=92 Score=36.31 Aligned_cols=41 Identities=24% Similarity=0.345 Sum_probs=29.5
Q ss_pred HHHHHHhhHHhhccCCCCchhhhHHHHHHHHHHHHhhccch-HHH
Q 001596 496 ILSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNF-NVA 539 (1048)
Q Consensus 496 LLsALLtGVNRA~Py~~~d~~ddi~e~~ldtLFrI~Hs~nf-nts 539 (1048)
=|-.+|.-++|.+.|+-.. . -|...-++|||.||+.+| +|+
T Consensus 70 ~L~~iL~~Lr~~s~yV~n~--~-EF~rLynsL~RfTH~~SFF~tC 111 (363)
T PF05503_consen 70 HLKSILDNLRRYSVYVCNS--S-EFWRLYNSLYRFTHCKSFFNTC 111 (363)
T ss_pred HHHHHHHhhcccceeecCh--H-HHHHHHHHHHHHhhhHHHHHHh
Confidence 3456788888888888764 1 244555899999999886 554
No 147
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription]
Probab=24.22 E-value=4.5e+02 Score=30.48 Aligned_cols=109 Identities=19% Similarity=0.307 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhhccch--HHHHHHHHHHHHHHhcCCCChhHHHHHHHhhhcCccccCCccH--HHHHHHHHHHHhcCc
Q 001596 519 IIEVQTPMLFKLVHSKNF--NVAVQALMLLDKISSKNHIVSDRFYRALYSKLLLPAAMNSSKA--EMFIGLLHRAMKNDV 594 (1048)
Q Consensus 519 i~e~~ldtLFrI~Hs~nf--ntsIQAL~LLfqI~s~~~~~sdRFYraLY~kLLdP~l~~SSk~--~mfLnLL~ksLK~D~ 594 (1048)
++.....-+|+.+|.... +-+++||+..-.....++..-+|=++-+-. +.+.++. +.++.+|.++|...+
T Consensus 123 ~I~d~A~~ifk~v~~~k~lrGks~eai~AAclyiACRq~~~pRT~kEI~~------~anv~kKEIgr~~K~i~~~l~~s~ 196 (308)
T KOG1597|consen 123 TIKDRANEIFKLVEDSKLLRGKSVEALAAACLYIACRQEDVPRTFKEISA------VANVSKKEIGRCVKLIGEALETSV 196 (308)
T ss_pred HHHHHHHHHHHHHHHhhhhcCccHHHHHHHHHHHHHHhcCCCchHHHHHH------HHcCCHHHHHHHHHHHHHHHhccc
Confidence 445566788999985432 567777776666666777777776666643 1222332 457777777776665
Q ss_pred cHHH--HHHHHHHHH-----------------HHH----h---cCCchhHHHHHHHHHHHHHhCC
Q 001596 595 NLKR--VAAFSKRLL-----------------QVV----L---QQPPQYACGCLFLLSEVLKARP 633 (1048)
Q Consensus 595 ~~~R--VaAFVKRLL-----------------Qva----l---~~pP~facg~L~LIseLLk~~P 633 (1048)
+..- ..-|+.|.. +.+ + -.|-+.+++++||+++|...+.
T Consensus 197 ~~~s~~t~~~m~RFCs~L~L~~~~q~aA~e~a~ka~~~~~~~gRsPiSIAAa~IYmisqls~~kk 261 (308)
T KOG1597|consen 197 DLISISTGDFMPRFCSNLGLPKSAQEAATEIAEKAEEMDIRAGRSPISIAAAAIYMISQLSDEKK 261 (308)
T ss_pred hhhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhccCcc
Confidence 4442 455666543 222 1 1355889999999999998443
No 148
>PRK09687 putative lyase; Provisional
Probab=24.19 E-value=5.2e+02 Score=29.28 Aligned_cols=94 Identities=14% Similarity=0.065 Sum_probs=65.0
Q ss_pred HHHHHHH-hcCchHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCchHHHHHHHH
Q 001596 325 VLALEES-SRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVVINEVD 403 (1048)
Q Consensus 325 vq~Le~l-s~D~l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~VVv~EVe 403 (1048)
+..|..+ .+|+-+.+|..|+..+..+=...++....++..+..-+-|++..|--.|.+-|.++ ++ .-++..+.
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----~~--~~ai~~L~ 165 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVI----ND--EAAIPLLI 165 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc----CC--HHHHHHHH
Confidence 3444444 79999999999999988874333333345666677777888888877777777533 22 22456666
Q ss_pred HhhcCCCCCcchHHHHHHHhhhh
Q 001596 404 SFLFRPHLGLRAKYHAVNFLSQI 426 (1048)
Q Consensus 404 ~lLfRpni~~rAqYYAv~fLnQi 426 (1048)
.+|-.++. ..+++|+..|.++
T Consensus 166 ~~L~d~~~--~VR~~A~~aLg~~ 186 (280)
T PRK09687 166 NLLKDPNG--DVRNWAAFALNSN 186 (280)
T ss_pred HHhcCCCH--HHHHHHHHHHhcC
Confidence 67765544 5889999999999
No 149
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=24.02 E-value=2.2e+02 Score=27.72 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=41.1
Q ss_pred HHHHHHHHHHH-----HHhhcCch-hHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCchHH
Q 001596 338 VLKTKALKIVY-----ALLTSKPE-QEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAV 397 (1048)
Q Consensus 338 ~~R~kal~~i~-----~LL~~kPE-QE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~V 397 (1048)
.+|.+||..|. .|++..+= ++..||+.|..=+|.|..-....+.-+|.. |-+||.-..+
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~-L~~~~~a~~~ 66 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLR-LLKSPYAAQI 66 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHH-HHhCcHHHHH
Confidence 35677764432 23322111 688999999999999998888888888888 6667765555
No 150
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=23.71 E-value=1.3e+02 Score=31.75 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHH
Q 001596 308 LLFWYYEEFLKQRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNL 387 (1048)
Q Consensus 308 L~lWyFEd~LK~~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~L 387 (1048)
++...+-..++.. ..+...+..|+++.-+..|.-++.+.+.+... +.-..+|.++.+-++|++.-|---...+|.++
T Consensus 106 ~~~~~~~~~~~~~-~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~ 182 (213)
T PF08713_consen 106 LCSKLLGPLLKKH-PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK--EDFDELLEIIEALLKDEEYYVQKAIGWALREI 182 (213)
T ss_dssp HTHHHHHHHHHHH-GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 3333333333333 66788899999999999999999888887766 45568888889999999987766666677777
Q ss_pred HhhCCC
Q 001596 388 LADHPN 393 (1048)
Q Consensus 388 L~~HP~ 393 (1048)
...||.
T Consensus 183 ~~~~~~ 188 (213)
T PF08713_consen 183 GKKDPD 188 (213)
T ss_dssp CTT-HH
T ss_pred HHhCHH
Confidence 776653
No 151
>PHA03080 putative virion core protein; Provisional
Probab=23.27 E-value=99 Score=36.16 Aligned_cols=40 Identities=25% Similarity=0.367 Sum_probs=29.7
Q ss_pred HHHHHhhHHhhccCCCCchhhhHHHHHHHHHHHHhhccch-HHH
Q 001596 497 LSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNF-NVA 539 (1048)
Q Consensus 497 LsALLtGVNRA~Py~~~d~~ddi~e~~ldtLFrI~Hs~nf-nts 539 (1048)
|-.+|.-++|.+.|+-.. . -|...-++|+|.||+.+| +|+
T Consensus 72 l~~iL~~Lr~~~~yV~n~--~-EF~rLynsL~RfTH~~SFF~tC 112 (366)
T PHA03080 72 LKKILDNLRRHSVYVCNS--T-EFWRLYNSLYRFTHCKSFFNTC 112 (366)
T ss_pred HHHHHHHhcccceeecCh--H-HHHHHHHHHHHHhhhHHHHHHh
Confidence 557888899999998764 2 244555899999999886 443
No 152
>PF14750 INTS2: Integrator complex subunit 2
Probab=23.02 E-value=1.6e+03 Score=30.64 Aligned_cols=118 Identities=18% Similarity=0.205 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHhc-Cc------------hHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHH
Q 001596 317 LKQRYERFVLALEESSR-DV------------LPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFH 383 (1048)
Q Consensus 317 LK~~Y~~Fvq~Le~ls~-D~------------l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~l 383 (1048)
|-.++...||+|-+.|- .+ +..+|..+..+++.+..+.| +|++++.-. |= ...+
T Consensus 869 l~~Q~sa~vqiLlE~c~~~~~~~~~~~~~~~~lrei~~~iC~~iHq~FI~~p----~L~klvhfQ-gy--------p~~l 935 (1049)
T PF14750_consen 869 LAAQESAAVQILLEICLPTEEDKNSDDSLLSELREIQCLICSFIHQMFIADP----NLAKLVHFQ-GY--------PSEL 935 (1049)
T ss_pred HHHHHHHHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHHHhcCh----hHHHHHHhc-CC--------CHHH
Confidence 34667778888877662 11 12466667778888888776 555555432 22 2335
Q ss_pred HHHHHhhCCCchHHHHHHHHHhhcCCCCCcchHHHHHHHhhhhhcccCC-CchHHHHHHHHHHHHHHH
Q 001596 384 LSNLLADHPNMKAVVINEVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKG-DGPKVAKRLIDVYFALFK 450 (1048)
Q Consensus 384 L~~LL~~HP~MK~VVv~EVe~lLfRpni~~rAqYYAv~fLnQi~Ls~k~-d~~~vA~~LI~iYF~lFk 450 (1048)
|--++..=|.|--. .+.|-++|-.| +...|.+||.+.+++...-.- ..-.+|.-++++-..+..
T Consensus 936 lp~~V~~IPSmHic-ldfi~Ell~~~--~~~kqvFaI~L~s~L~~~Y~l~~sl~~a~~~~~~~~~ll~ 1000 (1049)
T PF14750_consen 936 LPMLVEGIPSMHIC-LDFIPELLAQP--DLEKQVFAIQLASHLCHKYPLPKSLSVARLALNVLSTLLS 1000 (1049)
T ss_pred hHHHHccCcHHHHH-HHHHHHHHhCc--cHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHhh
Confidence 55666666888555 77888899888 678999999999998664321 001466666666666653
No 153
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=22.95 E-value=5.1e+02 Score=33.34 Aligned_cols=87 Identities=20% Similarity=0.277 Sum_probs=53.2
Q ss_pred hhhHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhc--CCCChhHHHHHHHhhhcCccccCCccHHHHHHHHHHHHhcC
Q 001596 516 ADDIIEVQTPMLFKLVHSKNFNVAVQALMLLDKISSK--NHIVSDRFYRALYSKLLLPAAMNSSKAEMFIGLLHRAMKND 593 (1048)
Q Consensus 516 ~ddi~e~~ldtLFrI~Hs~nfntsIQAL~LLfqI~s~--~~~~sdRFYraLY~kLLdP~l~~SSk~~mfLnLL~ksLK~D 593 (1048)
..+|++..+..|+-+- ....+-|--|+|+--|+.. ..+..--|||.-++..|- .|+ -=||++|++|-.-
T Consensus 464 a~EI~eci~eSlt~~~--t~~~kKiarLyLvsDIL~N~sarv~nas~YR~~FEa~L~-~If------d~l~~~yr~I~gR 534 (877)
T KOG0151|consen 464 AGEIVECITESLTNKE--TPLPKKIARLYLVSDILHNSSARVANASAYRKSFEATLE-DIF------DDLNDLYRSIGGR 534 (877)
T ss_pred HHHHHHHHHHHHhccC--CcchhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH-HHH------HHHHHHHHhccch
Confidence 3578888787776442 2355556667777777642 233444678877775542 222 1268899987532
Q ss_pred ccHHHHHHHHHHHHHHHhcCC
Q 001596 594 VNLKRVAAFSKRLLQVVLQQP 614 (1048)
Q Consensus 594 ~~~~RVaAFVKRLLQval~~p 614 (1048)
+ -.-+|.+|++.|.-.|-
T Consensus 535 I---kaE~fkqRV~kVirvWe 552 (877)
T KOG0151|consen 535 I---KAEAFKQRVMKVIRVWE 552 (877)
T ss_pred h---hHHHHHHHHHHHHHHHH
Confidence 1 23579999988864443
No 154
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=22.86 E-value=2.5e+03 Score=30.60 Aligned_cols=69 Identities=7% Similarity=0.063 Sum_probs=44.1
Q ss_pred HHHHHHHH-HhcCchHHHHHHHHHHHHHHhhcCchhH----HHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhC
Q 001596 323 RFVLALEE-SSRDVLPVLKTKALKIVYALLTSKPEQE----HRLLSALVNKLGDPQNKGASNADFHLSNLLADH 391 (1048)
Q Consensus 323 ~Fvq~Le~-ls~D~l~~~R~kal~~i~~LL~~kPEQE----~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~H 391 (1048)
.|++-++. +.+-....+|...|+|+..++.++.+.= ..++.+|---.+++...+...|--.|..+...|
T Consensus 1182 efLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~ 1255 (1780)
T PLN03076 1182 EFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREY 1255 (1780)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhh
Confidence 35555555 3344456789999999999988776531 344444443345777777777766676666654
No 155
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.55 E-value=2e+02 Score=36.64 Aligned_cols=274 Identities=21% Similarity=0.235 Sum_probs=154.8
Q ss_pred CchHHHHHHHHHHHHHHhhcCc----hhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhCCCchH-----------HH
Q 001596 334 DVLPVLKTKALKIVYALLTSKP----EQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKA-----------VV 398 (1048)
Q Consensus 334 D~l~~~R~kal~~i~~LL~~kP----EQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~-----------VV 398 (1048)
..-++..+-|-+|+..|+..+. ||.--+-..++|-||-...|.|+.+...|.||+.+-.-.-+ -+
T Consensus 50 gs~pYs~mlAst~L~Klvs~~t~lpl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~ 129 (1082)
T KOG1410|consen 50 GSYPYSQMLASTCLMKLVSRKTPLPLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDP 129 (1082)
T ss_pred CCCchHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhh
Confidence 3446888999999999998875 78888999999999999999999999999998876432221 25
Q ss_pred HHHHHHhhcCCCCCcchHHH--HHHHhhhhhccc---CCCc-----hHHHHHHHH-HHHHHHHHHHhhccCCCccccccc
Q 001596 399 INEVDSFLFRPHLGLRAKYH--AVNFLSQIRLSH---KGDG-----PKVAKRLID-VYFALFKVLITEAGAGDKMDKNSK 467 (1048)
Q Consensus 399 v~EVe~lLfRpni~~rAqYY--Av~fLnQi~Ls~---k~d~-----~~vA~~LI~-iYF~lFk~lv~~~~~~~k~~Kk~K 467 (1048)
|.+|.+||-..|+. || ||..|+|++--- .+.. .++|...-+ -.|.+|...+..-...
T Consensus 130 v~~~~kfl~~~~ve----~~~igv~iLsqLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~-------- 197 (1082)
T KOG1410|consen 130 VDDVTKFLQMDNVE----HCIIGVQILSQLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDN-------- 197 (1082)
T ss_pred HHHHHHHhccCchH----HHHHHHHHHHHHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHh--------
Confidence 66777888765544 44 456676665321 1111 135544332 3355564443311000
Q ss_pred cCCCCcCcccccccccCCCCCcccchhhHHHHHHhhHHhhc--cCCCC--ch-hhhHHHHHHH--------------HHH
Q 001596 468 TGNKHISTFSKKSQLKISPEPHIELDSRILSALLMGVNRAF--PYVSS--NE-ADDIIEVQTP--------------MLF 528 (1048)
Q Consensus 468 ~~~K~~~~k~kK~~~~~~~e~~~e~~sKLLsALLtGVNRA~--Py~~~--d~-~ddi~e~~ld--------------tLF 528 (1048)
...+.+ .+...+|+-++|.-.-++. -|+.. |+ .+++-..||+ ..|
T Consensus 198 ------~~~nln----------d~~q~~L~~~vL~L~l~Cl~FDfiGss~DEssed~ctVQIPTsWRs~f~d~stlqlfF 261 (1082)
T KOG1410|consen 198 ------VDLNLN----------DRAQLGLLMQVLKLNLNCLNFDFIGSSTDESSEDLCTVQIPTSWRSSFLDSSTLQLFF 261 (1082)
T ss_pred ------cccCcc----------cHhHhhHHHHHHHHHhhhccccccccccccccccccceecCcHHHHHhcCchHHHHHH
Confidence 000001 1234566666666555553 34433 21 1333334443 456
Q ss_pred HHhhccchHHHHHHHHHHHHHHhcC-----CCChhHHHHHHH----hhhcCccccCC-ccHHHHHHHHHHHH--------
Q 001596 529 KLVHSKNFNVAVQALMLLDKISSKN-----HIVSDRFYRALY----SKLLLPAAMNS-SKAEMFIGLLHRAM-------- 590 (1048)
Q Consensus 529 rI~Hs~nfntsIQAL~LLfqI~s~~-----~~~sdRFYraLY----~kLLdP~l~~S-Sk~~mfLnLL~ksL-------- 590 (1048)
.+-|+.+-.-|-.||..|-|+.+.+ +.....|-..|- +.|-.|.-..- ..---|-.||-|--
T Consensus 262 dly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~il~np~~LsD~~nyHeFCRllaRlktNYQL~EL 341 (1082)
T KOG1410|consen 262 DLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRILENPQGLSDPANYHEFCRLLARLKTNYQLGEL 341 (1082)
T ss_pred HHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCcCCCCcchHHHHHHHHHHHHhhhhhHhh
Confidence 7889888888888999999998763 334445555554 23334432211 11123444444321
Q ss_pred -hc---CccHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCCccc
Q 001596 591 -KN---DVNLKRVAAFSKRLLQVVLQQPPQYACGCLFLLSEVLKARPPLW 636 (1048)
Q Consensus 591 -K~---D~~~~RVaAFVKRLLQval~~pP~facg~L~LIseLLk~~P~L~ 636 (1048)
+- -..++-+|-|.=.-||.- .+.|+.+--.|-+-..+...-|-++
T Consensus 342 v~v~~Y~e~irLiAeFTv~SLq~w-efa~nSvyyLlt~WqRmvaSVPyvk 390 (1082)
T KOG1410|consen 342 VKVECYPEVIRLIAEFTVTSLQHW-EFAPNSVYYLLTLWQRMVASVPYVK 390 (1082)
T ss_pred hccCCcHHHHHHHHHHHHHHHHhh-hcccchhHHHHHHHHHHHhcCCccc
Confidence 10 124556777765555543 2344544455555566666666554
No 156
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=22.42 E-value=1.4e+03 Score=31.32 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhhcCch---hHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhhC
Q 001596 337 PVLKTKALKIVYALLTSKPE---QEHRLLSALVNKLGDPQNKGASNADFHLSNLLADH 391 (1048)
Q Consensus 337 ~~~R~kal~~i~~LL~~kPE---QE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~H 391 (1048)
..+-.-...++++.+..++- ....||.+..-|+||++.-|-+.|..+|..|..+.
T Consensus 517 ~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~R~ 574 (1120)
T PF14228_consen 517 PRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSEIRSKAMQLLRALEERF 574 (1120)
T ss_pred hhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHHHHHHHHHHHHHHHHHh
Confidence 34545566677888765532 47789999999999999999999999999887664
No 157
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=21.88 E-value=9e+02 Score=32.58 Aligned_cols=74 Identities=18% Similarity=0.263 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHhhcC-chhHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhh-CCCchHH
Q 001596 324 FVLALEESSRDVLPVLKTKALKIVYALLTSK-PEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLAD-HPNMKAV 397 (1048)
Q Consensus 324 Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~k-PEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~-HP~MK~V 397 (1048)
|+-.|..-+.||-+++|++++..+..||..- ---...|.--.|--|=|-..+|++.|-++|..+|+. .|+|-..
T Consensus 1007 YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~ 1082 (1529)
T KOG0413|consen 1007 YIPMIAASLCDPSVIVRRQTIILLARLLQFGIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPL 1082 (1529)
T ss_pred hhHHHHHHhcCchHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHH
Confidence 3334444678899999999999999998321 001112222223334488999999999999998776 5888653
No 158
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.68 E-value=85 Score=37.32 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=10.5
Q ss_pred HHHHhcC--ccHHHHHHHHHHHH
Q 001596 587 HRAMKND--VNLKRVAAFSKRLL 607 (1048)
Q Consensus 587 ~ksLK~D--~~~~RVaAFVKRLL 607 (1048)
++.+++| ..+.|+.-|.|.|.
T Consensus 22 ~~~v~~dye~~~erl~~~~kkLs 44 (514)
T KOG3130|consen 22 RKKVDNDYEALRERLSTLPKKLS 44 (514)
T ss_pred HHHHhhhHHHHHHHHHHhhhhcc
Confidence 3444444 24455666666543
No 159
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.12 E-value=2e+03 Score=28.80 Aligned_cols=43 Identities=26% Similarity=0.274 Sum_probs=24.3
Q ss_pred HhhhcCCCCCcchhhHHHHHHHHHHhhCCCchHHHHHHHHHhhcC
Q 001596 364 ALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVVINEVDSFLFR 408 (1048)
Q Consensus 364 lLVNKLGDp~~KVASkAs~lL~~LL~~HP~MK~VVv~EVe~lLfR 408 (1048)
.|+|-|..+..=|.+.|..-|.++. -|-|..-+.-||+++|-.
T Consensus 111 slknDL~s~nq~vVglAL~alg~i~--s~EmardlapeVe~Ll~~ 153 (866)
T KOG1062|consen 111 SLKNDLNSSNQYVVGLALCALGNIC--SPEMARDLAPEVERLLQH 153 (866)
T ss_pred HHHhhccCCCeeehHHHHHHhhccC--CHHHhHHhhHHHHHHHhC
Confidence 3444555566666666655555553 355666666666666643
No 160
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=21.11 E-value=2.8e+02 Score=33.32 Aligned_cols=78 Identities=23% Similarity=0.249 Sum_probs=46.7
Q ss_pred hccchHHHHHHHHHHHHHHhcC------CCChhHHHHHHHhhhcCc-cccCCccHHHHHHHHHHHHhcCccHHHHHHHHH
Q 001596 532 HSKNFNVAVQALMLLDKISSKN------HIVSDRFYRALYSKLLLP-AAMNSSKAEMFIGLLHRAMKNDVNLKRVAAFSK 604 (1048)
Q Consensus 532 Hs~nfntsIQAL~LLfqI~s~~------~~~sdRFYraLY~kLLdP-~l~~SSk~~mfLnLL~ksLK~D~~~~RVaAFVK 604 (1048)
...+-++.+|||.||--+.... .+.|..|-.-||+.+-+- +.--+.+...+++=.-..+|.|.++.-+-|.+|
T Consensus 55 n~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp~lsLi~~l~~ 134 (462)
T KOG2199|consen 55 NHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDPSLSLISALYK 134 (462)
T ss_pred cCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 4457799999999999888653 456667777777643321 111123333333333335677777776766666
Q ss_pred HHHHH
Q 001596 605 RLLQV 609 (1048)
Q Consensus 605 RLLQv 609 (1048)
.|-+.
T Consensus 135 klk~~ 139 (462)
T KOG2199|consen 135 KLKEE 139 (462)
T ss_pred HHHHc
Confidence 66653
No 161
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.02 E-value=55 Score=38.80 Aligned_cols=14 Identities=7% Similarity=0.131 Sum_probs=6.9
Q ss_pred cHHHHHHHHHHhCC
Q 001596 800 TLTAFLDKFMEKKP 813 (1048)
Q Consensus 800 TL~~FLDRFvyknP 813 (1048)
.+..|++|--|-.|
T Consensus 105 ~~~n~~~~vkf~~d 118 (514)
T KOG3130|consen 105 VMKNFESRVKFTED 118 (514)
T ss_pred HHHhhHHHhhhccc
Confidence 44555555444443
No 162
>KOG4820 consensus Involved in anesthetic response in C.elegans [General function prediction only]
Probab=20.85 E-value=1.2e+02 Score=37.38 Aligned_cols=94 Identities=26% Similarity=0.331 Sum_probs=57.1
Q ss_pred HHHHhhhcCCCCCc-chhhHHHHHHHHHHhhCCCchHHHHHHHHHhhc-------CCCCCcchHHHHHHHhhhhh----c
Q 001596 361 LLSALVNKLGDPQN-KGASNADFHLSNLLADHPNMKAVVINEVDSFLF-------RPHLGLRAKYHAVNFLSQIR----L 428 (1048)
Q Consensus 361 LL~lLVNKLGDp~~-KVASkAs~lL~~LL~~HP~MK~VVv~EVe~lLf-------Rpni~~rAqYYAv~fLnQi~----L 428 (1048)
-+||+-|.|..|+. -||....|.-.+|+.--..+...--+-+++|+. -||+.+-+-|||+..|=.+. .
T Consensus 30 hiRLlhN~lPaPSgadIannikYFqQTLi~~LKD~~ssphel~~d~leD~aRmnaYPNLeYg~LYnAitmLiDVaPcIq~ 109 (933)
T KOG4820|consen 30 HIRLLHNQLPAPSGADIANNIKYFQQTLIGFLKDFPSSPHELCEDFLEDAARMNAYPNLEYGALYNAITMLIDVAPCIQS 109 (933)
T ss_pred HHHHhcccCCCCCcchHHHHHHHHHHHHHHHHhcCCCChHHHHhchhhchHHhccCCCcchHHHHHHHHHHHHHhHhhcc
Confidence 46788999998884 678777776555554333332222233455553 48999999999998874321 1
Q ss_pred ccCCC---chHHHHHHHHHHHHHHHHHHh
Q 001596 429 SHKGD---GPKVAKRLIDVYFALFKVLIT 454 (1048)
Q Consensus 429 s~k~d---~~~vA~~LI~iYF~lFk~lv~ 454 (1048)
...+. +..+..-||.|.|.+-|.++.
T Consensus 110 qpqG~i~Fg~aiLqcL~cIl~fldkdlid 138 (933)
T KOG4820|consen 110 QPQGLIFFGAAILQCLICILFFLDKDLID 138 (933)
T ss_pred CCCceEEeHHHHHHHHHHhccccchhhhh
Confidence 11110 124555677777777666663
No 163
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=20.41 E-value=7.3e+02 Score=28.05 Aligned_cols=135 Identities=19% Similarity=0.242 Sum_probs=78.5
Q ss_pred hhhHHHHHHhhHHhhccCCCCchhhhHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhcCC---------CChhHHHHH
Q 001596 493 DSRILSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNFNVAVQALMLLDKISSKNH---------IVSDRFYRA 563 (1048)
Q Consensus 493 ~sKLLsALLtGVNRA~Py~~~d~~ddi~e~~ldtLFrI~Hs~nfntsIQAL~LLfqI~s~~~---------~~sdRFYra 563 (1048)
..-|+..||.-+.+|.-.++...-++-..-|+-.+|-|++. -.-.|+.+|.++++... .....+.+.
T Consensus 29 ~e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~----re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~i 104 (249)
T PF06685_consen 29 REEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQF----REERALPPLIRLFSQDDDFLEDLFGDFITEDLPRI 104 (249)
T ss_pred HHHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHH----hhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHH
Confidence 34555566666666553221000011223355566666553 23356777777775432 334455555
Q ss_pred HHh-----------hhcCccccCCccHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhC
Q 001596 564 LYS-----------KLLLPAAMNSSKAEMFIGLLHRAMKNDVNLKRVAAFSKRLLQVVLQQPPQYACGCLFLLSEVLKAR 632 (1048)
Q Consensus 564 LY~-----------kLLdP~l~~SSk~~mfLnLL~ksLK~D~~~~RVaAFVKRLLQval~~pP~facg~L~LIseLLk~~ 632 (1048)
||. .+.+|.+..=.+.+.+=.|.+.+...-..-..|.++.+++++-.+--.|+++-|.| |+.++--+
T Consensus 105 lasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~L--v~~~~dL~ 182 (249)
T PF06685_consen 105 LASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSL--VADICDLY 182 (249)
T ss_pred HHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHH--HHHHHhcC
Confidence 553 23344444334445555566666666677888999999999998888899977776 57777766
Q ss_pred C
Q 001596 633 P 633 (1048)
Q Consensus 633 P 633 (1048)
|
T Consensus 183 ~ 183 (249)
T PF06685_consen 183 P 183 (249)
T ss_pred H
Confidence 6
No 164
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=20.35 E-value=7.9e+02 Score=27.75 Aligned_cols=131 Identities=18% Similarity=0.203 Sum_probs=67.0
Q ss_pred hhHHHHHHhhHHhhccCCCCchhhhHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhcCCC---ChhHHHHHHHhhhcC
Q 001596 494 SRILSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNFNVAVQALMLLDKISSKNHI---VSDRFYRALYSKLLL 570 (1048)
Q Consensus 494 sKLLsALLtGVNRA~Py~~~d~~ddi~e~~ldtLFrI~Hs~nfntsIQAL~LLfqI~s~~~~---~sdRFYraLY~kLLd 570 (1048)
-.+|+.+|..+.+-. .+..++.-+++..++ |+.+ ..+...||..+.+|+...+. .....-++|+. -.+
T Consensus 20 ~~~Ls~vL~~lp~~~--L~~~ev~~L~~F~~~---rl~D---~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~-~~~ 90 (262)
T PF14500_consen 20 LELLSEVLERLPPDF--LSRQEVQVLLDFFCS---RLDD---HACVQPALKGLLALVKMKNFSPESAVKILRSLFQ-NVD 90 (262)
T ss_pred HHHHHHHHHhCCHhh--ccHHHHHHHHHHHHH---Hhcc---HhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHH-hCC
Confidence 455666666553322 333223233333332 3333 33344445555555544443 33455555554 334
Q ss_pred ccccCCccHHHHHHHHHHHHhcCc-cHHH-HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhCC
Q 001596 571 PAAMNSSKAEMFIGLLHRAMKNDV-NLKR-VAAFSKRLLQVVLQQ-PPQYACGCLFLLSEVLKARP 633 (1048)
Q Consensus 571 P~l~~SSk~~mfLnLL~ksLK~D~-~~~R-VaAFVKRLLQval~~-pP~facg~L~LIseLLk~~P 633 (1048)
++....+.+-.+++||...|.+-. .+.. -..||..++|++-.- -|--..-++-|+..+++.++
T Consensus 91 ~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 91 VQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 444445556667777766665431 2211 357999999987544 55444555555566666665
No 165
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=20.30 E-value=34 Score=43.68 Aligned_cols=23 Identities=30% Similarity=0.231 Sum_probs=18.3
Q ss_pred HHHHhhCCCchHHHHHHHHHhhc
Q 001596 385 SNLLADHPNMKAVVINEVDSFLF 407 (1048)
Q Consensus 385 ~~LL~~HP~MK~VVv~EVe~lLf 407 (1048)
+..++.+|.+..|.|++|...|-
T Consensus 118 ~~~~~~~~~k~yv~i~~v~~~lk 140 (713)
T PF03344_consen 118 LARIQNNPKKVYVHINEVCTELK 140 (713)
T ss_dssp HHHHHH-CCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCeEEEEHHHHHHHHH
Confidence 34678899999999999998774
No 166
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=20.29 E-value=66 Score=44.36 Aligned_cols=10 Identities=50% Similarity=0.514 Sum_probs=6.2
Q ss_pred hhhhhhhhcc
Q 001596 1035 EKKLNLKKKR 1044 (1048)
Q Consensus 1035 ~~k~~~kkk~ 1044 (1048)
+++.|+|-|+
T Consensus 327 e~~~klkek~ 336 (2849)
T PTZ00415 327 EKEEKLKEKL 336 (2849)
T ss_pred hhhhhHHHHH
Confidence 4566676665
No 167
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=20.16 E-value=3.9e+02 Score=34.04 Aligned_cols=108 Identities=18% Similarity=0.185 Sum_probs=72.3
Q ss_pred HHHHHH--HHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhH---------HHHHHHhhhcCCCCCcchhhHHHHHHH
Q 001596 317 LKQRYE--RFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQE---------HRLLSALVNKLGDPQNKGASNADFHLS 385 (1048)
Q Consensus 317 LK~~Y~--~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE---------~~LL~lLVNKLGDp~~KVASkAs~lL~ 385 (1048)
||..|. .||..|+.++.++...+|..++.++++|.-+--|-+ .++|..+.| ||+--|-..+-.+|.
T Consensus 453 ~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~n---d~d~~Vqeq~fqllR 529 (678)
T KOG1293|consen 453 LKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLIN---DPDWAVQEQCFQLLR 529 (678)
T ss_pred HHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 444443 478899999999999999999999999986666643 234444444 999999888888888
Q ss_pred HHHhhCCCchHHHHHHHHHhh----------cCCCCCcchHHHHHHHhhhhh
Q 001596 386 NLLADHPNMKAVVINEVDSFL----------FRPHLGLRAKYHAVNFLSQIR 427 (1048)
Q Consensus 386 ~LL~~HP~MK~VVv~EVe~lL----------fRpni~~rAqYYAv~fLnQi~ 427 (1048)
.|+-..-..--+|+.++...+ -|.-+..-..||-++.+|-..
T Consensus 530 Nl~c~~~~svdfll~~~~~~ld~i~l~lk~a~~~pi~ie~~~~~~~l~~~~d 581 (678)
T KOG1293|consen 530 NLTCNSRKSVDFLLEKFKDVLDKIDLQLKIAIGSPILIEFLAKKMRLLNPLD 581 (678)
T ss_pred HhhcCcHHHHHHHHHhhhHHHHHHHHHHhhccCCceehhhHHHHHHhccchh
Confidence 887664333334444443322 233344455577776666553
No 168
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=20.02 E-value=87 Score=23.46 Aligned_cols=29 Identities=28% Similarity=0.321 Sum_probs=23.4
Q ss_pred HHHHhhhcCCCCCcchhhHHHHHHHHHHh
Q 001596 361 LLSALVNKLGDPQNKGASNADFHLSNLLA 389 (1048)
Q Consensus 361 LL~lLVNKLGDp~~KVASkAs~lL~~LL~ 389 (1048)
||..+++-|.||+..|-..|.+.|..+.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 56677888899999999999999988765
Done!