Query 001598
Match_columns 1047
No_of_seqs 522 out of 2905
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:47:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001598.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001598hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 2E-132 3E-137 1200.3 71.0 961 1-1046 362-1353(1463)
2 PTZ00014 myosin-A; Provisional 100.0 2E-106 4E-111 983.3 36.2 416 1-416 396-818 (821)
3 KOG0160 Myosin class V heavy c 100.0 7E-103 1E-107 927.5 42.2 457 1-463 301-758 (862)
4 KOG0161 Myosin class II heavy 100.0 3.4E-97 7E-102 938.4 60.6 654 1-686 382-1083(1930)
5 cd01384 MYSc_type_XI Myosin mo 100.0 1.6E-98 3E-103 904.2 33.5 374 1-374 301-674 (674)
6 KOG0164 Myosin class I heavy c 100.0 4.8E-97 1E-101 826.1 32.7 434 1-444 304-755 (1001)
7 cd01380 MYSc_type_V Myosin mot 100.0 3.9E-95 8E-100 880.1 33.1 369 1-370 299-691 (691)
8 cd01378 MYSc_type_I Myosin mot 100.0 4.3E-95 9E-100 877.5 33.2 369 1-370 295-674 (674)
9 cd01381 MYSc_type_VII Myosin m 100.0 5E-95 1.1E-99 875.0 33.0 370 1-370 295-671 (671)
10 cd01377 MYSc_type_II Myosin mo 100.0 5.8E-95 1.3E-99 878.8 33.5 370 1-370 308-693 (693)
11 cd01387 MYSc_type_XV Myosin mo 100.0 1.4E-94 2.9E-99 872.0 33.5 369 1-370 296-677 (677)
12 cd01383 MYSc_type_VIII Myosin 100.0 2E-94 4.3E-99 869.0 33.1 366 1-370 298-677 (677)
13 cd01385 MYSc_type_IX Myosin mo 100.0 1.1E-93 2.4E-98 865.9 33.2 367 1-370 307-688 (692)
14 cd01382 MYSc_type_VI Myosin mo 100.0 1.2E-93 2.6E-98 868.7 32.8 367 1-369 327-715 (717)
15 cd01379 MYSc_type_III Myosin m 100.0 6.5E-93 1.4E-97 852.8 32.9 347 1-370 302-653 (653)
16 smart00242 MYSc Myosin. Large 100.0 1.8E-92 3.8E-97 859.5 33.3 371 1-371 303-677 (677)
17 KOG0162 Myosin class I heavy c 100.0 8.8E-92 1.9E-96 783.4 23.8 400 1-404 312-725 (1106)
18 cd00124 MYSc Myosin motor doma 100.0 1.3E-90 2.8E-95 846.1 33.0 370 1-370 296-679 (679)
19 cd01386 MYSc_type_XVIII Myosin 100.0 4.5E-89 9.8E-94 829.4 31.4 370 1-370 294-767 (767)
20 KOG0163 Myosin class VI heavy 100.0 5.6E-86 1.2E-90 737.1 53.3 437 1-448 381-838 (1259)
21 PF00063 Myosin_head: Myosin h 100.0 1.6E-85 3.5E-90 812.1 28.3 359 1-359 297-689 (689)
22 KOG4229 Myosin VII, myosin IXB 100.0 6.9E-52 1.5E-56 504.9 14.1 456 2-465 360-1008(1062)
23 KOG1892 Actin filament-binding 99.9 7.2E-26 1.6E-30 260.3 17.3 235 744-1046 541-785 (1629)
24 PF01843 DIL: DIL domain; Int 99.8 3E-19 6.6E-24 167.4 3.9 72 974-1047 1-72 (105)
25 KOG0161 Myosin class II heavy 99.2 8.6E-08 1.9E-12 125.5 38.4 564 90-683 413-1031(1930)
26 KOG0160 Myosin class V heavy c 98.6 3.7E-06 8E-11 102.8 21.0 85 424-511 674-758 (862)
27 KOG0520 Uncharacterized conser 98.3 6.9E-07 1.5E-11 109.0 7.3 131 371-518 806-938 (975)
28 COG5022 Myosin heavy chain [Cy 98.2 0.00054 1.2E-08 86.9 29.3 88 424-511 746-834 (1463)
29 KOG0520 Uncharacterized conser 97.9 1.9E-05 4.2E-10 96.7 7.9 129 376-510 757-905 (975)
30 KOG0971 Microtubule-associated 97.9 0.018 3.8E-07 69.6 31.6 63 522-584 291-356 (1243)
31 KOG0250 DNA repair protein RAD 97.4 0.62 1.3E-05 58.8 36.0 75 612-686 390-464 (1074)
32 KOG0250 DNA repair protein RAD 97.4 0.24 5.2E-06 62.2 31.8 27 972-998 931-957 (1074)
33 PF09726 Macoilin: Transmembra 97.4 0.023 5E-07 70.3 23.4 82 608-689 544-653 (697)
34 KOG1029 Endocytic adaptor prot 97.3 0.036 7.8E-07 66.0 22.9 29 614-642 435-463 (1118)
35 PRK11637 AmiB activator; Provi 97.3 0.081 1.8E-06 62.7 26.3 68 617-684 185-252 (428)
36 PF09726 Macoilin: Transmembra 97.2 0.11 2.4E-06 64.4 27.5 70 617-686 588-657 (697)
37 KOG0996 Structural maintenance 97.2 0.8 1.7E-05 57.9 34.0 13 335-347 209-221 (1293)
38 KOG1029 Endocytic adaptor prot 97.2 0.061 1.3E-06 64.1 23.2 50 608-657 471-520 (1118)
39 PRK11637 AmiB activator; Provi 97.2 0.1 2.3E-06 61.8 26.3 64 614-677 189-252 (428)
40 TIGR02169 SMC_prok_A chromosom 97.2 0.82 1.8E-05 61.5 38.0 14 972-985 1016-1029(1164)
41 TIGR02169 SMC_prok_A chromosom 97.2 0.5 1.1E-05 63.6 35.8 32 656-687 411-442 (1164)
42 KOG0971 Microtubule-associated 97.1 0.26 5.6E-06 60.1 27.4 28 944-971 897-924 (1243)
43 COG1579 Zn-ribbon protein, pos 97.1 0.21 4.6E-06 53.2 23.9 53 608-660 88-140 (239)
44 PF12718 Tropomyosin_1: Tropom 97.1 0.13 2.7E-06 51.0 20.9 47 526-583 12-58 (143)
45 KOG1853 LIS1-interacting prote 97.0 0.54 1.2E-05 49.2 26.9 25 663-687 162-186 (333)
46 COG4942 Membrane-bound metallo 97.0 0.21 4.5E-06 57.3 24.6 56 627-682 193-248 (420)
47 KOG0933 Structural maintenance 97.0 0.16 3.4E-06 62.8 24.3 49 90-150 120-169 (1174)
48 KOG0164 Myosin class I heavy c 96.9 0.0076 1.6E-07 71.0 12.4 61 422-492 695-755 (1001)
49 PF00612 IQ: IQ calmodulin-bin 96.9 0.0011 2.3E-08 42.7 3.1 20 424-443 2-21 (21)
50 KOG0933 Structural maintenance 96.9 1.4 3.1E-05 54.8 31.3 11 348-358 619-629 (1174)
51 PF07888 CALCOCO1: Calcium bin 96.9 0.14 3.1E-06 60.5 22.4 14 531-544 167-180 (546)
52 KOG2128 Ras GTPase-activating 96.9 0.019 4.1E-07 73.1 16.0 118 401-518 510-646 (1401)
53 PRK09039 hypothetical protein; 96.8 0.18 3.9E-06 57.6 22.5 29 522-550 47-75 (343)
54 KOG0996 Structural maintenance 96.8 1.8 3.9E-05 54.9 31.9 7 251-257 143-149 (1293)
55 TIGR02168 SMC_prok_B chromosom 96.8 0.59 1.3E-05 63.0 31.0 19 998-1016 1088-1106(1179)
56 TIGR02168 SMC_prok_B chromosom 96.8 3 6.4E-05 56.2 37.7 9 337-345 124-132 (1179)
57 PRK04863 mukB cell division pr 96.7 1.4 2.9E-05 59.6 32.8 39 649-687 440-478 (1486)
58 COG1196 Smc Chromosome segrega 96.7 1.1 2.4E-05 59.9 31.7 10 334-343 554-563 (1163)
59 PF14662 CCDC155: Coiled-coil 96.6 0.34 7.4E-06 49.4 19.8 75 614-688 65-139 (193)
60 PF07888 CALCOCO1: Calcium bin 96.6 0.24 5.2E-06 58.7 21.4 25 521-545 150-174 (546)
61 PF08317 Spc7: Spc7 kinetochor 96.6 0.41 8.8E-06 54.5 23.0 82 607-688 207-292 (325)
62 COG1196 Smc Chromosome segrega 96.6 4.4 9.5E-05 54.4 36.1 70 618-687 385-454 (1163)
63 PF00261 Tropomyosin: Tropomyo 96.5 0.099 2.1E-06 56.6 17.2 62 608-669 91-152 (237)
64 KOG4229 Myosin VII, myosin IXB 96.5 0.0015 3.2E-08 82.8 3.3 267 245-513 645-1008(1062)
65 PRK02224 chromosome segregatio 96.5 0.2 4.3E-06 65.3 22.8 10 156-165 35-44 (880)
66 PF00612 IQ: IQ calmodulin-bin 96.5 0.0033 7.2E-08 40.4 3.2 19 472-490 2-20 (21)
67 PF15070 GOLGA2L5: Putative go 96.5 0.43 9.2E-06 58.5 23.8 28 607-634 151-178 (617)
68 KOG4643 Uncharacterized coiled 96.5 0.78 1.7E-05 56.9 25.3 49 525-573 405-456 (1195)
69 PF00261 Tropomyosin: Tropomyo 96.5 1 2.2E-05 48.8 24.3 75 611-685 143-217 (237)
70 COG1579 Zn-ribbon protein, pos 96.4 1.4 3.1E-05 47.1 23.8 39 615-653 102-140 (239)
71 PF12718 Tropomyosin_1: Tropom 96.4 0.63 1.4E-05 46.1 20.0 33 613-645 77-109 (143)
72 PRK02224 chromosome segregatio 96.4 2.8 6E-05 54.7 32.1 23 997-1019 779-805 (880)
73 KOG0994 Extracellular matrix g 96.2 4.3 9.3E-05 51.3 29.5 17 666-682 1725-1741(1758)
74 PF12128 DUF3584: Protein of u 96.2 8.1 0.00018 52.0 37.6 19 155-173 28-46 (1201)
75 KOG2128 Ras GTPase-activating 96.2 0.087 1.9E-06 67.4 15.8 114 381-494 513-645 (1401)
76 KOG0976 Rho/Rac1-interacting s 96.2 0.86 1.9E-05 54.9 22.6 79 608-686 322-400 (1265)
77 PRK03918 chromosome segregatio 96.1 0.54 1.2E-05 61.3 23.7 71 614-684 624-699 (880)
78 KOG0977 Nuclear envelope prote 96.1 0.37 8E-06 57.2 19.4 74 610-683 107-180 (546)
79 KOG0978 E3 ubiquitin ligase in 96.0 6 0.00013 48.6 35.3 84 608-691 537-620 (698)
80 KOG1003 Actin filament-coating 96.0 2.2 4.8E-05 43.5 21.4 79 607-685 107-185 (205)
81 PF10473 CENP-F_leu_zip: Leuci 95.9 1.2 2.6E-05 43.6 19.0 60 621-680 57-116 (140)
82 PF12128 DUF3584: Protein of u 95.9 11 0.00024 50.8 39.0 24 182-205 81-114 (1201)
83 PHA02562 46 endonuclease subun 95.9 1.9 4E-05 53.2 25.8 26 608-633 298-323 (562)
84 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.8 1 2.2E-05 44.1 18.4 27 662-688 102-128 (132)
85 COG3883 Uncharacterized protei 95.8 3 6.6E-05 45.1 23.2 26 558-583 71-96 (265)
86 PF04849 HAP1_N: HAP1 N-termin 95.8 1 2.2E-05 49.8 19.9 68 610-677 235-302 (306)
87 PF13851 GAS: Growth-arrest sp 95.8 2.3 4.9E-05 44.8 22.1 78 608-685 92-170 (201)
88 KOG0976 Rho/Rac1-interacting s 95.8 1.7 3.7E-05 52.5 22.9 32 656-687 275-306 (1265)
89 KOG0163 Myosin class VI heavy 95.8 5.7 0.00012 48.1 26.9 58 428-494 779-836 (1259)
90 PF00038 Filament: Intermediat 95.8 4.7 0.0001 45.6 26.8 29 524-552 71-99 (312)
91 KOG1103 Predicted coiled-coil 95.8 2.5 5.3E-05 46.4 22.1 52 635-686 243-294 (561)
92 KOG0977 Nuclear envelope prote 95.7 2.5 5.4E-05 50.5 24.2 81 608-688 147-231 (546)
93 PF08317 Spc7: Spc7 kinetochor 95.7 1.2 2.5E-05 50.8 21.3 67 614-680 221-291 (325)
94 smart00787 Spc7 Spc7 kinetocho 95.7 2.1 4.6E-05 48.1 22.8 78 611-688 206-287 (312)
95 smart00015 IQ Short calmodulin 95.7 0.0098 2.1E-07 40.5 2.7 21 423-443 3-23 (26)
96 PRK09039 hypothetical protein; 95.6 0.31 6.6E-06 55.8 16.1 142 525-677 43-184 (343)
97 COG4372 Uncharacterized protei 95.6 3.2 6.8E-05 46.4 22.5 30 657-686 251-280 (499)
98 PRK03918 chromosome segregatio 95.5 2.1 4.5E-05 55.9 25.6 18 995-1012 784-801 (880)
99 KOG0980 Actin-binding protein 95.5 8 0.00017 48.0 27.6 16 248-263 201-216 (980)
100 KOG0980 Actin-binding protein 95.5 6.1 0.00013 48.9 26.5 52 610-661 467-518 (980)
101 PHA02562 46 endonuclease subun 95.5 3.1 6.7E-05 51.2 25.6 17 610-626 307-323 (562)
102 PF15619 Lebercilin: Ciliary p 95.5 3.6 7.9E-05 42.9 21.8 28 611-638 120-147 (194)
103 PF10481 CENP-F_N: Cenp-F N-te 95.4 1.2 2.6E-05 47.5 17.9 72 618-689 62-133 (307)
104 COG4942 Membrane-bound metallo 95.3 4.9 0.00011 46.4 23.8 43 643-685 202-244 (420)
105 TIGR00606 rad50 rad50. This fa 95.2 3 6.6E-05 56.6 26.2 7 951-957 1244-1250(1311)
106 KOG4643 Uncharacterized coiled 95.1 13 0.00029 46.7 29.9 150 522-689 171-339 (1195)
107 KOG4360 Uncharacterized coiled 95.1 0.71 1.5E-05 53.2 16.2 75 612-686 229-303 (596)
108 KOG0999 Microtubule-associated 95.1 3.9 8.4E-05 47.7 22.0 24 666-689 195-218 (772)
109 PF07111 HCR: Alpha helical co 95.1 8.9 0.00019 46.6 25.8 80 608-687 161-264 (739)
110 KOG0018 Structural maintenance 95.1 15 0.00031 46.9 28.7 37 424-460 211-247 (1141)
111 KOG4673 Transcription factor T 95.0 11 0.00024 45.3 29.0 51 530-580 582-632 (961)
112 KOG4674 Uncharacterized conser 95.0 17 0.00037 49.3 30.5 51 638-688 838-888 (1822)
113 PF04849 HAP1_N: HAP1 N-termin 95.0 7 0.00015 43.4 23.0 61 616-676 227-287 (306)
114 PF14662 CCDC155: Coiled-coil 95.0 5 0.00011 41.1 23.2 39 608-646 101-139 (193)
115 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.9 2.5 5.3E-05 41.4 17.8 66 611-676 61-130 (132)
116 KOG1853 LIS1-interacting prote 94.9 6 0.00013 41.7 22.0 79 611-689 93-181 (333)
117 KOG0249 LAR-interacting protei 94.9 2.2 4.9E-05 51.2 20.0 20 995-1022 756-775 (916)
118 smart00015 IQ Short calmodulin 94.9 0.027 5.8E-07 38.3 2.8 20 471-490 3-22 (26)
119 PTZ00014 myosin-A; Provisional 94.8 0.038 8.3E-07 69.7 6.2 39 425-463 779-817 (821)
120 KOG0995 Centromere-associated 94.8 12 0.00025 44.6 28.0 75 610-684 426-504 (581)
121 PF15397 DUF4618: Domain of un 94.8 7.3 0.00016 42.2 24.7 45 645-689 180-224 (258)
122 TIGR03185 DNA_S_dndD DNA sulfu 94.6 10 0.00022 47.6 27.0 36 649-684 426-461 (650)
123 PF00038 Filament: Intermediat 94.6 10 0.00022 42.9 30.6 71 613-683 213-287 (312)
124 PF08614 ATG16: Autophagy prot 94.5 0.32 6.9E-06 51.0 11.3 77 610-686 103-179 (194)
125 KOG2991 Splicing regulator [RN 94.5 7.6 0.00017 41.1 22.6 57 630-686 250-306 (330)
126 PF13870 DUF4201: Domain of un 94.5 6.7 0.00015 40.4 21.7 77 610-686 85-173 (177)
127 PF10174 Cast: RIM-binding pro 94.5 5.7 0.00012 50.0 23.5 27 557-583 333-359 (775)
128 KOG1003 Actin filament-coating 94.5 6.7 0.00014 40.2 21.5 27 653-679 160-186 (205)
129 COG4026 Uncharacterized protei 94.4 0.36 7.7E-06 49.6 10.6 65 622-686 134-198 (290)
130 PF05667 DUF812: Protein of un 94.3 6.7 0.00015 48.1 23.3 17 188-206 79-95 (594)
131 PF05701 WEMBL: Weak chloropla 94.3 7.8 0.00017 47.1 24.0 22 608-629 336-357 (522)
132 PF05483 SCP-1: Synaptonemal c 94.3 9.6 0.00021 46.0 23.2 46 644-689 580-625 (786)
133 PRK04863 mukB cell division pr 94.2 31 0.00068 47.1 37.2 44 642-685 440-483 (1486)
134 KOG0963 Transcription factor/C 94.2 13 0.00028 44.7 24.0 48 642-689 290-341 (629)
135 KOG0995 Centromere-associated 94.1 6.7 0.00014 46.5 21.4 19 520-538 234-252 (581)
136 COG4372 Uncharacterized protei 94.1 13 0.00027 41.9 28.1 75 608-682 209-283 (499)
137 PF06785 UPF0242: Uncharacteri 94.1 11 0.00025 41.4 21.6 79 608-686 133-222 (401)
138 TIGR00606 rad50 rad50. This fa 94.1 34 0.00073 46.8 33.6 12 950-961 1240-1251(1311)
139 TIGR02977 phageshock_pspA phag 94.0 10 0.00022 40.6 21.5 75 608-682 98-183 (219)
140 PF10481 CENP-F_N: Cenp-F N-te 93.9 5 0.00011 43.0 18.1 30 658-687 162-191 (307)
141 KOG0612 Rho-associated, coiled 93.9 6.4 0.00014 50.5 22.0 37 182-218 212-253 (1317)
142 KOG0982 Centrosomal protein Nu 93.9 11 0.00023 43.1 21.5 17 561-577 298-314 (502)
143 COG3883 Uncharacterized protei 93.9 12 0.00025 40.8 22.1 27 557-583 77-103 (265)
144 PF15066 CAGE1: Cancer-associa 93.9 13 0.00028 43.0 22.3 10 644-653 485-494 (527)
145 KOG2991 Splicing regulator [RN 93.8 10 0.00023 40.1 26.2 83 607-689 215-302 (330)
146 PF04156 IncA: IncA protein; 93.8 3.7 8.1E-05 42.8 17.5 20 659-678 166-185 (191)
147 PF10168 Nup88: Nuclear pore c 93.6 11 0.00023 47.5 23.7 28 614-641 637-664 (717)
148 PF10473 CENP-F_leu_zip: Leuci 93.6 8.1 0.00018 38.0 20.6 14 531-544 20-33 (140)
149 TIGR01843 type_I_hlyD type I s 93.5 12 0.00025 44.2 23.4 24 663-686 244-267 (423)
150 PRK04778 septation ring format 93.5 11 0.00023 46.6 23.3 59 611-669 350-408 (569)
151 PF04012 PspA_IM30: PspA/IM30 93.4 8.1 0.00018 41.3 19.7 77 608-684 97-184 (221)
152 TIGR02680 conserved hypothetic 93.3 13 0.00027 50.8 25.5 19 655-673 365-383 (1353)
153 PRK10698 phage shock protein P 93.3 13 0.00029 39.7 22.4 123 559-683 51-184 (222)
154 PRK01156 chromosome segregatio 93.2 17 0.00037 47.6 26.1 35 649-683 686-720 (895)
155 KOG0982 Centrosomal protein Nu 93.0 6.7 0.00015 44.6 18.2 28 659-686 361-388 (502)
156 PRK10884 SH3 domain-containing 92.9 1.4 3E-05 46.5 12.4 76 608-686 92-167 (206)
157 KOG0979 Structural maintenance 92.8 22 0.00049 45.0 24.0 25 521-545 202-226 (1072)
158 PRK04778 septation ring format 92.8 31 0.00068 42.5 31.5 33 651-683 383-415 (569)
159 PF15070 GOLGA2L5: Putative go 92.6 33 0.00072 42.4 30.4 16 944-959 571-586 (617)
160 PF14915 CCDC144C: CCDC144C pr 92.6 19 0.00041 39.5 25.5 113 561-680 180-300 (305)
161 PF15619 Lebercilin: Ciliary p 92.5 15 0.00033 38.3 23.2 31 617-647 119-149 (194)
162 PF04111 APG6: Autophagy prote 92.4 2 4.4E-05 48.5 13.8 35 652-686 100-134 (314)
163 PF05010 TACC: Transforming ac 92.4 17 0.00036 38.4 25.6 75 612-686 121-196 (207)
164 PF04111 APG6: Autophagy prote 92.3 2 4.3E-05 48.6 13.5 81 610-690 51-131 (314)
165 KOG2129 Uncharacterized conser 92.1 25 0.00055 39.9 22.3 10 472-481 85-94 (552)
166 KOG0964 Structural maintenance 92.1 13 0.00028 46.7 20.4 40 648-687 457-496 (1200)
167 PF09789 DUF2353: Uncharacteri 92.1 24 0.00053 39.6 25.4 79 611-689 135-220 (319)
168 TIGR03185 DNA_S_dndD DNA sulfu 92.0 20 0.00044 45.0 23.5 79 610-688 392-472 (650)
169 PF13870 DUF4201: Domain of un 92.0 14 0.0003 38.0 18.5 77 612-688 59-135 (177)
170 smart00787 Spc7 Spc7 kinetocho 91.9 26 0.00056 39.6 25.3 61 619-679 221-285 (312)
171 COG2433 Uncharacterized conser 91.9 6.4 0.00014 47.0 17.1 79 608-686 428-509 (652)
172 PF09730 BicD: Microtubule-ass 91.7 23 0.00051 44.1 22.5 74 610-683 98-181 (717)
173 PF14197 Cep57_CLD_2: Centroso 91.7 2.7 5.9E-05 36.0 10.4 66 613-685 2-67 (69)
174 TIGR01843 type_I_hlyD type I s 91.7 15 0.00032 43.3 20.9 70 614-683 201-271 (423)
175 KOG0804 Cytoplasmic Zn-finger 91.6 5.4 0.00012 45.7 15.6 18 662-679 432-449 (493)
176 PF14197 Cep57_CLD_2: Centroso 91.5 2.1 4.6E-05 36.7 9.6 27 661-687 36-62 (69)
177 PF09738 DUF2051: Double stran 91.4 4.1 9E-05 45.4 14.4 71 611-681 100-170 (302)
178 PF10186 Atg14: UV radiation r 91.3 15 0.00033 41.0 19.7 71 613-683 74-144 (302)
179 COG5185 HEC1 Protein involved 91.3 33 0.00072 39.7 22.5 11 313-323 137-147 (622)
180 PF05911 DUF869: Plant protein 91.3 22 0.00047 44.9 22.0 75 608-682 91-165 (769)
181 KOG0994 Extracellular matrix g 91.2 55 0.0012 42.1 31.1 71 611-681 1600-1670(1758)
182 PF04156 IncA: IncA protein; 91.2 8.9 0.00019 40.0 16.3 16 561-576 96-111 (191)
183 KOG4360 Uncharacterized coiled 91.2 5.7 0.00012 46.1 15.4 73 612-684 222-294 (596)
184 PF15254 CCDC14: Coiled-coil d 91.1 11 0.00025 46.1 18.4 40 614-653 492-531 (861)
185 PF15066 CAGE1: Cancer-associa 91.1 21 0.00045 41.4 19.3 24 522-545 332-355 (527)
186 PF09755 DUF2046: Uncharacteri 91.0 30 0.00064 38.5 25.9 22 667-688 180-201 (310)
187 PF09755 DUF2046: Uncharacteri 90.9 30 0.00065 38.5 26.6 59 624-682 143-202 (310)
188 KOG0963 Transcription factor/C 90.8 45 0.00098 40.3 29.2 80 610-689 183-266 (629)
189 PF01576 Myosin_tail_1: Myosin 90.7 0.073 1.6E-06 68.2 0.0 76 612-687 148-223 (859)
190 PF09730 BicD: Microtubule-ass 90.6 27 0.00059 43.5 21.7 24 522-545 266-289 (717)
191 PLN02939 transferase, transfer 90.6 24 0.00052 45.4 21.6 61 521-582 226-286 (977)
192 TIGR03007 pepcterm_ChnLen poly 90.5 31 0.00067 41.8 22.5 15 609-623 254-268 (498)
193 PF10186 Atg14: UV radiation r 90.4 23 0.0005 39.5 20.0 15 662-676 130-144 (302)
194 PF08826 DMPK_coil: DMPK coile 90.3 4.5 9.8E-05 33.7 10.1 31 655-685 29-59 (61)
195 PRK01156 chromosome segregatio 90.3 72 0.0016 41.8 36.4 62 949-1011 732-813 (895)
196 TIGR01005 eps_transp_fam exopo 90.3 36 0.00079 43.6 23.8 15 472-486 168-182 (754)
197 KOG1962 B-cell receptor-associ 90.2 2.4 5.2E-05 44.5 10.5 51 639-689 160-210 (216)
198 COG2433 Uncharacterized conser 90.1 5.1 0.00011 47.8 14.2 16 131-147 59-74 (652)
199 KOG1937 Uncharacterized conser 90.1 42 0.00091 38.8 22.6 73 617-689 346-420 (521)
200 COG1382 GimC Prefoldin, chaper 90.1 8.8 0.00019 36.4 13.1 76 610-685 21-111 (119)
201 KOG0612 Rho-associated, coiled 90.0 74 0.0016 41.5 29.9 74 611-684 618-693 (1317)
202 PF08614 ATG16: Autophagy prot 90.0 4.2 9.1E-05 42.6 12.5 61 609-669 116-176 (194)
203 COG4026 Uncharacterized protei 89.7 4.1 8.8E-05 42.2 11.3 70 610-679 143-212 (290)
204 KOG0978 E3 ubiquitin ligase in 89.6 62 0.0014 40.1 30.9 76 612-687 527-602 (698)
205 KOG4673 Transcription factor T 89.6 57 0.0012 39.7 31.7 50 608-657 703-752 (961)
206 PF07111 HCR: Alpha helical co 89.6 60 0.0013 39.9 24.3 67 620-686 159-225 (739)
207 PF10146 zf-C4H2: Zinc finger- 89.5 13 0.00029 39.8 15.8 26 662-687 78-103 (230)
208 PF05911 DUF869: Plant protein 89.5 71 0.0015 40.5 25.1 82 608-689 119-207 (769)
209 KOG1899 LAR transmembrane tyro 89.5 5.4 0.00012 47.3 13.5 21 1001-1021 707-727 (861)
210 KOG4674 Uncharacterized conser 89.4 1E+02 0.0022 42.4 36.7 67 525-591 763-829 (1822)
211 PF10498 IFT57: Intra-flagella 89.4 13 0.00028 42.7 16.7 42 614-655 278-319 (359)
212 KOG0964 Structural maintenance 89.4 34 0.00074 43.2 20.7 70 616-685 300-376 (1200)
213 PF13514 AAA_27: AAA domain 89.4 94 0.002 41.8 32.8 22 35-56 80-101 (1111)
214 PF04091 Sec15: Exocyst comple 89.4 3.3 7.2E-05 46.7 11.9 104 942-1046 175-281 (311)
215 PF08826 DMPK_coil: DMPK coile 89.0 6.6 0.00014 32.7 10.1 44 635-678 16-59 (61)
216 PF14915 CCDC144C: CCDC144C pr 88.8 42 0.0009 37.0 30.2 46 646-691 195-240 (305)
217 KOG0979 Structural maintenance 88.8 80 0.0017 40.4 23.4 27 948-974 837-864 (1072)
218 PF05010 TACC: Transforming ac 88.8 35 0.00075 36.0 22.6 20 623-642 118-137 (207)
219 PF07889 DUF1664: Protein of u 88.7 4.7 0.0001 38.9 10.5 66 613-678 58-123 (126)
220 PF11559 ADIP: Afadin- and alp 88.5 8.6 0.00019 38.5 13.0 17 670-686 131-147 (151)
221 PF10498 IFT57: Intra-flagella 88.4 24 0.00053 40.6 18.0 47 614-660 271-317 (359)
222 KOG1899 LAR transmembrane tyro 88.4 10 0.00022 45.2 14.7 16 667-682 240-255 (861)
223 PF15254 CCDC14: Coiled-coil d 88.3 65 0.0014 39.9 21.7 7 533-539 439-445 (861)
224 PRK10929 putative mechanosensi 88.2 25 0.00054 46.3 19.8 26 608-633 172-197 (1109)
225 KOG0018 Structural maintenance 88.1 92 0.002 40.1 29.5 9 305-313 67-75 (1141)
226 PF10174 Cast: RIM-binding pro 88.1 87 0.0019 39.8 33.8 78 609-686 514-597 (775)
227 TIGR02680 conserved hypothetic 88.1 1.2E+02 0.0027 41.5 33.6 19 428-446 725-743 (1353)
228 KOG1937 Uncharacterized conser 88.0 58 0.0013 37.7 22.6 26 520-545 292-317 (521)
229 PF13514 AAA_27: AAA domain 87.9 52 0.0011 44.2 23.5 81 606-686 239-324 (1111)
230 KOG0946 ER-Golgi vesicle-tethe 87.8 82 0.0018 39.2 25.7 82 608-689 791-886 (970)
231 PF04437 RINT1_TIP1: RINT-1 / 87.8 8.6 0.00019 46.6 14.8 98 943-1046 352-449 (494)
232 PF12777 MT: Microtubule-bindi 87.7 44 0.00095 38.4 19.8 32 645-676 229-260 (344)
233 PF10168 Nup88: Nuclear pore c 87.7 62 0.0013 40.9 22.4 33 608-640 638-670 (717)
234 PF01576 Myosin_tail_1: Myosin 87.5 0.17 3.7E-06 64.9 0.0 81 608-688 425-505 (859)
235 PF10146 zf-C4H2: Zinc finger- 87.5 22 0.00047 38.2 15.8 64 610-680 40-103 (230)
236 PRK11281 hypothetical protein; 87.3 41 0.00088 44.5 21.0 26 608-633 191-216 (1113)
237 COG4477 EzrA Negative regulato 87.3 72 0.0016 38.0 22.9 79 607-685 345-423 (570)
238 PF05622 HOOK: HOOK protein; 87.1 0.19 4E-06 63.6 0.0 33 652-684 392-424 (713)
239 KOG1962 B-cell receptor-associ 86.7 8.1 0.00017 40.6 11.6 62 614-675 149-210 (216)
240 KOG0946 ER-Golgi vesicle-tethe 86.6 81 0.0018 39.3 21.1 25 608-632 736-760 (970)
241 TIGR00634 recN DNA repair prot 85.9 59 0.0013 40.1 20.9 7 352-358 105-111 (563)
242 PF10205 KLRAQ: Predicted coil 85.9 14 0.00031 34.0 11.3 70 616-685 5-74 (102)
243 KOG4807 F-actin binding protei 85.8 68 0.0015 36.3 22.5 78 608-685 434-539 (593)
244 KOG0249 LAR-interacting protei 85.7 35 0.00075 41.6 17.3 6 988-993 824-829 (916)
245 KOG4593 Mitotic checkpoint pro 85.6 1E+02 0.0022 38.0 31.0 36 891-927 605-640 (716)
246 PF15397 DUF4618: Domain of un 85.5 60 0.0013 35.4 24.0 44 644-687 186-229 (258)
247 PRK10361 DNA recombination pro 85.4 89 0.0019 37.3 26.3 12 670-681 170-181 (475)
248 KOG0288 WD40 repeat protein Ti 85.3 19 0.00041 41.1 14.2 42 612-653 30-71 (459)
249 PLN03188 kinesin-12 family pro 85.3 34 0.00074 44.8 18.2 41 648-688 1201-1241(1320)
250 PRK12704 phosphodiesterase; Pr 85.0 37 0.0008 41.3 18.0 9 950-958 440-448 (520)
251 PF06005 DUF904: Protein of un 85.0 21 0.00046 30.9 11.5 19 619-637 14-32 (72)
252 COG1842 PspA Phage shock prote 84.8 60 0.0013 34.8 20.5 19 663-681 164-182 (225)
253 PF06818 Fez1: Fez1; InterPro 84.8 24 0.00053 36.8 13.9 131 533-688 15-154 (202)
254 PF11932 DUF3450: Protein of u 84.7 12 0.00027 40.8 12.7 76 608-683 41-116 (251)
255 KOG0243 Kinesin-like protein [ 84.6 86 0.0019 40.6 21.0 37 248-284 164-216 (1041)
256 KOG0243 Kinesin-like protein [ 84.6 75 0.0016 41.1 20.5 29 297-325 173-203 (1041)
257 PRK11281 hypothetical protein; 84.5 68 0.0015 42.5 21.1 27 662-688 282-308 (1113)
258 KOG4809 Rab6 GTPase-interactin 84.5 67 0.0014 38.1 18.4 78 608-685 330-407 (654)
259 PF11180 DUF2968: Protein of u 84.0 27 0.00058 36.0 13.5 82 610-691 106-187 (192)
260 PRK10869 recombination and rep 83.9 1.1E+02 0.0023 37.7 21.6 32 657-688 340-371 (553)
261 PRK13729 conjugal transfer pil 83.9 3.3 7.2E-05 48.4 8.1 52 623-674 69-120 (475)
262 cd00632 Prefoldin_beta Prefold 83.8 24 0.00051 33.0 12.4 30 654-683 73-102 (105)
263 TIGR01005 eps_transp_fam exopo 83.6 1.4E+02 0.0031 38.2 29.6 21 661-681 379-399 (754)
264 TIGR03017 EpsF chain length de 83.6 1E+02 0.0023 36.6 22.0 8 352-359 41-48 (444)
265 PF07106 TBPIP: Tat binding pr 83.4 5 0.00011 41.0 8.5 67 608-686 71-137 (169)
266 PRK00106 hypothetical protein; 83.4 53 0.0011 39.9 18.1 29 946-974 451-480 (535)
267 PF05667 DUF812: Protein of un 83.3 1.3E+02 0.0027 37.3 32.5 33 654-686 560-592 (594)
268 KOG0962 DNA repair protein RAD 83.2 1.7E+02 0.0038 38.9 23.6 32 613-644 301-332 (1294)
269 PF09738 DUF2051: Double stran 83.1 85 0.0018 35.2 19.5 31 657-687 218-248 (302)
270 TIGR01000 bacteriocin_acc bact 83.1 1.1E+02 0.0024 36.6 24.0 25 662-686 288-312 (457)
271 PRK15422 septal ring assembly 83.0 25 0.00055 30.7 10.9 28 615-642 17-44 (79)
272 COG1382 GimC Prefoldin, chaper 82.9 45 0.00096 31.8 14.0 18 627-644 74-91 (119)
273 KOG0804 Cytoplasmic Zn-finger 82.9 88 0.0019 36.4 18.3 15 668-682 431-445 (493)
274 PF05384 DegS: Sensor protein 82.7 57 0.0012 32.9 21.2 79 608-686 76-154 (159)
275 PF03148 Tektin: Tektin family 82.5 1.1E+02 0.0023 35.9 26.5 166 506-681 129-368 (384)
276 KOG4603 TBP-1 interacting prot 82.3 13 0.00028 37.1 10.1 25 662-686 120-144 (201)
277 PF03962 Mnd1: Mnd1 family; I 82.1 13 0.00029 38.6 11.0 77 612-688 65-151 (188)
278 PF10205 KLRAQ: Predicted coil 81.8 28 0.0006 32.2 11.4 66 610-675 6-71 (102)
279 TIGR03319 YmdA_YtgF conserved 81.7 57 0.0012 39.6 17.7 128 547-680 20-147 (514)
280 PF06637 PV-1: PV-1 protein (P 81.7 75 0.0016 36.0 16.8 45 531-582 277-321 (442)
281 PF05769 DUF837: Protein of un 81.6 69 0.0015 33.1 21.3 23 665-687 153-175 (181)
282 PRK09343 prefoldin subunit bet 81.5 36 0.00079 32.7 13.0 44 645-688 72-115 (121)
283 PF13851 GAS: Growth-arrest sp 81.3 77 0.0017 33.4 23.4 79 610-688 87-166 (201)
284 PF11932 DUF3450: Protein of u 81.3 72 0.0016 34.8 17.1 31 614-644 68-98 (251)
285 PF05622 HOOK: HOOK protein; 81.2 0.48 1E-05 60.0 0.0 46 638-683 364-409 (713)
286 PF15556 Zwint: ZW10 interacto 81.0 72 0.0016 32.9 17.6 24 664-687 147-170 (252)
287 PF07106 TBPIP: Tat binding pr 81.0 7.5 0.00016 39.7 8.7 27 610-636 80-106 (169)
288 TIGR02338 gimC_beta prefoldin, 80.6 36 0.00079 32.0 12.5 29 654-682 77-105 (110)
289 PF10234 Cluap1: Clusterin-ass 80.3 89 0.0019 34.3 16.8 48 610-657 170-217 (267)
290 TIGR03752 conj_TIGR03752 integ 80.2 16 0.00036 42.8 11.8 81 608-688 58-139 (472)
291 COG5185 HEC1 Protein involved 80.1 1.3E+02 0.0027 35.2 24.1 58 628-685 485-546 (622)
292 PF12761 End3: Actin cytoskele 80.0 24 0.00052 36.6 11.6 77 610-686 97-195 (195)
293 KOG3684 Ca2+-activated K+ chan 79.8 95 0.0021 36.3 17.3 37 456-492 349-385 (489)
294 PF10212 TTKRSYEDQ: Predicted 79.5 1.5E+02 0.0032 35.6 21.8 25 661-685 490-514 (518)
295 PF13863 DUF4200: Domain of un 79.4 61 0.0013 31.1 17.5 58 628-685 51-108 (126)
296 PF01486 K-box: K-box region; 79.3 27 0.00058 32.3 11.0 80 607-688 10-98 (100)
297 PF05266 DUF724: Protein of un 79.2 22 0.00048 37.0 11.4 27 617-643 125-151 (190)
298 PF15294 Leu_zip: Leucine zipp 79.1 92 0.002 34.3 16.3 18 669-686 257-274 (278)
299 KOG0239 Kinesin (KAR3 subfamil 79.0 1.2E+02 0.0025 38.2 19.4 20 812-831 480-500 (670)
300 PF05557 MAD: Mitotic checkpoi 79.0 0.62 1.3E-05 59.1 0.0 9 1013-1021 696-704 (722)
301 PF02403 Seryl_tRNA_N: Seryl-t 79.0 17 0.00036 34.1 9.7 74 607-684 27-100 (108)
302 COG4717 Uncharacterized conser 79.0 1.9E+02 0.0041 36.6 30.6 38 69-106 3-49 (984)
303 PF01920 Prefoldin_2: Prefoldi 78.9 45 0.00098 30.7 12.7 33 610-642 6-38 (106)
304 PF05837 CENP-H: Centromere pr 78.6 18 0.00039 33.9 9.6 71 616-687 3-73 (106)
305 KOG0999 Microtubule-associated 78.5 1.5E+02 0.0033 35.3 26.5 18 812-829 487-504 (772)
306 KOG4302 Microtubule-associated 78.5 1.6E+02 0.0035 36.6 19.9 37 608-644 159-195 (660)
307 TIGR03495 phage_LysB phage lys 78.4 36 0.00077 33.3 11.7 76 612-687 22-97 (135)
308 KOG4593 Mitotic checkpoint pro 78.3 1.8E+02 0.0039 35.9 27.7 21 471-491 86-106 (716)
309 PF12240 Angiomotin_C: Angiomo 78.3 91 0.002 32.5 17.8 42 650-691 128-169 (205)
310 COG0419 SbcC ATPase involved i 78.2 2.3E+02 0.005 37.2 29.3 38 950-987 740-777 (908)
311 PF05557 MAD: Mitotic checkpoi 77.9 0.7 1.5E-05 58.6 0.0 80 610-689 344-423 (722)
312 PF06785 UPF0242: Uncharacteri 77.9 1.2E+02 0.0027 33.8 22.8 22 655-676 198-219 (401)
313 PF10046 BLOC1_2: Biogenesis o 77.7 33 0.00072 31.7 11.0 70 613-682 25-97 (99)
314 PRK13729 conjugal transfer pil 77.7 9.4 0.0002 44.8 8.9 61 627-687 66-126 (475)
315 cd00632 Prefoldin_beta Prefold 77.1 50 0.0011 30.7 12.3 8 569-576 15-22 (105)
316 PF13166 AAA_13: AAA domain 77.0 2.2E+02 0.0047 36.2 24.3 177 509-687 270-453 (712)
317 PF05529 Bap31: B-cell recepto 77.0 18 0.00039 37.7 10.3 6 621-626 130-135 (192)
318 COG3074 Uncharacterized protei 76.7 45 0.00098 28.2 10.5 12 622-633 24-35 (79)
319 PF10267 Tmemb_cc2: Predicted 76.6 77 0.0017 36.9 15.8 21 658-678 298-318 (395)
320 PF14992 TMCO5: TMCO5 family 76.2 1.3E+02 0.0028 33.2 16.4 16 666-681 152-167 (280)
321 PF15456 Uds1: Up-regulated Du 76.0 46 0.001 32.1 11.7 79 607-686 20-109 (124)
322 PF09787 Golgin_A5: Golgin sub 75.9 1.1E+02 0.0023 37.3 17.9 12 775-786 340-351 (511)
323 PF08172 CASP_C: CASP C termin 75.7 32 0.0007 37.4 11.9 44 644-687 86-129 (248)
324 smart00338 BRLZ basic region l 75.5 30 0.00066 29.1 9.4 47 642-688 17-63 (65)
325 PF06428 Sec2p: GDP/GTP exchan 75.1 3.3 7.2E-05 38.2 3.6 73 609-688 8-81 (100)
326 COG0497 RecN ATPase involved i 75.1 2.1E+02 0.0045 35.0 21.7 7 352-358 100-106 (557)
327 PF04012 PspA_IM30: PspA/IM30 74.9 1.2E+02 0.0026 32.3 19.9 25 558-582 49-73 (221)
328 PF10234 Cluap1: Clusterin-ass 74.6 1.4E+02 0.003 32.8 18.9 14 304-317 3-16 (267)
329 TIGR02338 gimC_beta prefoldin, 74.6 74 0.0016 29.9 12.7 33 655-687 71-103 (110)
330 PRK10246 exonuclease subunit S 74.4 3.1E+02 0.0067 36.7 24.6 29 608-636 776-804 (1047)
331 PF00170 bZIP_1: bZIP transcri 74.3 32 0.0007 28.8 9.2 42 646-687 21-62 (64)
332 PF07798 DUF1640: Protein of u 74.1 1.1E+02 0.0024 31.5 15.8 25 609-633 73-97 (177)
333 PF05700 BCAS2: Breast carcino 73.8 45 0.00097 35.7 12.4 76 610-688 137-212 (221)
334 PF05266 DUF724: Protein of un 73.7 53 0.0012 34.2 12.4 21 665-685 159-179 (190)
335 PF06637 PV-1: PV-1 protein (P 73.5 1.3E+02 0.0027 34.3 15.6 28 661-688 352-379 (442)
336 PF10211 Ax_dynein_light: Axon 73.4 1.2E+02 0.0026 31.6 15.3 10 675-684 173-182 (189)
337 PF04102 SlyX: SlyX; InterPro 73.0 19 0.00042 30.8 7.6 24 663-686 23-46 (69)
338 KOG2010 Double stranded RNA bi 72.8 15 0.00033 40.3 8.2 72 611-682 135-206 (405)
339 PF04582 Reo_sigmaC: Reovirus 72.5 7.1 0.00015 43.6 6.0 76 612-687 80-155 (326)
340 PRK03947 prefoldin subunit alp 72.3 94 0.002 30.5 13.5 8 568-575 14-21 (140)
341 TIGR03752 conj_TIGR03752 integ 72.3 33 0.00071 40.4 11.4 77 609-685 66-143 (472)
342 KOG4603 TBP-1 interacting prot 72.3 37 0.00079 34.1 10.0 66 609-681 79-146 (201)
343 COG1340 Uncharacterized archae 72.3 1.7E+02 0.0036 32.6 28.3 30 656-685 212-241 (294)
344 PF10211 Ax_dynein_light: Axon 72.2 74 0.0016 33.2 13.2 19 663-681 168-186 (189)
345 KOG4005 Transcription factor X 72.2 59 0.0013 34.3 11.9 57 631-687 91-147 (292)
346 TIGR02449 conserved hypothetic 72.1 48 0.001 28.1 9.3 26 634-659 25-50 (65)
347 KOG2264 Exostosin EXT1L [Signa 71.4 29 0.00063 41.0 10.6 59 630-688 93-151 (907)
348 PF01920 Prefoldin_2: Prefoldi 71.1 86 0.0019 28.9 12.8 11 616-626 19-29 (106)
349 PF09728 Taxilin: Myosin-like 71.0 1.9E+02 0.0041 32.7 37.1 79 608-686 222-300 (309)
350 COG0497 RecN ATPase involved i 71.0 2.5E+02 0.0055 34.2 21.5 27 660-686 344-370 (557)
351 TIGR01000 bacteriocin_acc bact 71.0 2.3E+02 0.0051 33.8 25.2 28 655-682 288-315 (457)
352 PRK03947 prefoldin subunit alp 70.9 64 0.0014 31.7 12.0 26 659-684 102-127 (140)
353 KOG2751 Beclin-like protein [S 70.2 1.3E+02 0.0029 34.9 15.3 76 611-686 185-267 (447)
354 KOG2751 Beclin-like protein [S 70.0 1.6E+02 0.0035 34.2 15.9 27 655-681 243-269 (447)
355 PF04871 Uso1_p115_C: Uso1 / p 69.9 1.2E+02 0.0025 29.9 16.2 30 655-684 81-110 (136)
356 KOG2072 Translation initiation 69.8 3.1E+02 0.0066 34.7 23.2 31 607-637 668-698 (988)
357 COG0419 SbcC ATPase involved i 69.7 3.6E+02 0.0078 35.5 28.2 18 995-1012 811-828 (908)
358 PTZ00121 MAEBL; Provisional 69.6 4E+02 0.0087 36.0 33.3 36 958-993 1993-2031(2084)
359 PF10224 DUF2205: Predicted co 69.6 23 0.00049 31.4 7.2 40 647-686 19-58 (80)
360 KOG2891 Surface glycoprotein [ 69.2 1.7E+02 0.0037 31.6 19.7 17 304-320 122-138 (445)
361 PF15290 Syntaphilin: Golgi-lo 69.0 1.8E+02 0.0039 31.8 15.0 21 558-578 87-107 (305)
362 KOG4403 Cell surface glycoprot 69.0 2.3E+02 0.0049 32.9 18.0 20 529-548 253-272 (575)
363 PF06008 Laminin_I: Laminin Do 68.9 1.9E+02 0.004 31.9 22.6 65 612-676 181-245 (264)
364 PF07798 DUF1640: Protein of u 68.6 1.5E+02 0.0032 30.6 17.4 24 560-583 73-96 (177)
365 KOG3433 Protein involved in me 68.4 57 0.0012 33.2 10.5 63 612-674 77-139 (203)
366 PF03962 Mnd1: Mnd1 family; I 68.4 1.3E+02 0.0029 31.3 14.0 16 661-676 152-167 (188)
367 PRK00409 recombination and DNA 68.2 92 0.002 40.0 15.4 14 350-363 367-381 (782)
368 PF14389 Lzipper-MIP1: Leucine 68.0 39 0.00085 30.5 8.7 33 527-559 7-39 (88)
369 KOG4403 Cell surface glycoprot 68.0 2.4E+02 0.0051 32.7 21.4 20 561-580 303-322 (575)
370 COG1730 GIM5 Predicted prefold 67.4 1.3E+02 0.0027 30.0 12.8 24 662-685 112-135 (145)
371 PF14389 Lzipper-MIP1: Leucine 67.1 20 0.00043 32.4 6.6 69 619-687 11-83 (88)
372 PF06428 Sec2p: GDP/GTP exchan 66.9 4 8.6E-05 37.7 2.2 69 612-680 18-87 (100)
373 KOG4809 Rab6 GTPase-interactin 66.8 2.8E+02 0.0062 33.2 20.4 15 562-576 333-347 (654)
374 KOG0239 Kinesin (KAR3 subfamil 66.8 1.5E+02 0.0032 37.3 16.3 69 618-686 243-314 (670)
375 PF05278 PEARLI-4: Arabidopsis 66.7 2E+02 0.0044 31.5 17.0 53 624-676 208-260 (269)
376 PF12761 End3: Actin cytoskele 66.6 23 0.0005 36.7 7.7 21 522-542 97-117 (195)
377 TIGR02231 conserved hypothetic 66.5 57 0.0012 39.9 12.8 81 608-688 70-168 (525)
378 PF07851 TMPIT: TMPIT-like pro 66.4 79 0.0017 35.8 12.5 53 611-663 6-58 (330)
379 PF02403 Seryl_tRNA_N: Seryl-t 66.4 49 0.0011 30.9 9.6 23 662-684 71-93 (108)
380 PF13094 CENP-Q: CENP-Q, a CEN 66.3 44 0.00095 33.8 9.9 38 610-647 21-58 (160)
381 KOG0240 Kinesin (SMY1 subfamil 66.0 3.1E+02 0.0066 33.2 18.5 62 611-672 416-477 (607)
382 PF10805 DUF2730: Protein of u 65.9 54 0.0012 30.7 9.6 12 666-677 80-91 (106)
383 TIGR03007 pepcterm_ChnLen poly 65.7 3.1E+02 0.0066 33.2 26.0 13 567-579 254-266 (498)
384 PF12777 MT: Microtubule-bindi 65.6 27 0.00059 40.1 9.2 74 613-686 232-305 (344)
385 KOG4427 E3 ubiquitin protein l 65.6 7.7 0.00017 47.1 4.7 23 421-443 28-50 (1096)
386 TIGR01069 mutS2 MutS2 family p 65.4 88 0.0019 40.1 14.4 10 197-206 221-230 (771)
387 KOG2685 Cystoskeletal protein 64.9 2.7E+02 0.0059 32.3 22.4 26 516-541 93-118 (421)
388 PF09731 Mitofilin: Mitochondr 64.5 3.5E+02 0.0076 33.5 24.6 24 753-777 449-472 (582)
389 PF10212 TTKRSYEDQ: Predicted 64.2 3.2E+02 0.0069 32.9 17.8 66 620-685 417-482 (518)
390 TIGR00634 recN DNA repair prot 63.8 3.6E+02 0.0078 33.3 20.3 16 624-639 323-338 (563)
391 PF15035 Rootletin: Ciliary ro 63.7 1.8E+02 0.0038 30.2 13.7 16 563-578 19-34 (182)
392 KOG2685 Cystoskeletal protein 63.6 2.9E+02 0.0062 32.1 25.8 29 654-682 361-389 (421)
393 COG1730 GIM5 Predicted prefold 63.1 1.7E+02 0.0036 29.2 14.4 41 608-648 93-133 (145)
394 PF15233 SYCE1: Synaptonemal c 62.9 61 0.0013 31.1 9.1 66 621-686 4-69 (134)
395 PF04102 SlyX: SlyX; InterPro 62.8 39 0.00085 29.0 7.4 18 659-676 33-50 (69)
396 PF09728 Taxilin: Myosin-like 62.2 2.7E+02 0.006 31.4 33.5 33 657-689 236-268 (309)
397 PF02994 Transposase_22: L1 tr 62.2 15 0.00033 42.5 6.4 15 670-684 170-184 (370)
398 KOG2264 Exostosin EXT1L [Signa 61.4 33 0.00072 40.5 8.5 50 614-663 98-147 (907)
399 PF10267 Tmemb_cc2: Predicted 61.3 3.2E+02 0.007 31.9 17.7 18 524-541 222-239 (395)
400 cd00890 Prefoldin Prefoldin is 61.2 1.3E+02 0.0029 28.7 12.0 31 656-686 92-122 (129)
401 PLN02678 seryl-tRNA synthetase 60.6 55 0.0012 38.9 10.6 80 608-691 32-111 (448)
402 PF06120 Phage_HK97_TLTM: Tail 60.5 2.9E+02 0.0062 31.1 17.9 29 513-541 40-68 (301)
403 KOG4196 bZIP transcription fac 60.1 1.2E+02 0.0026 29.2 10.5 40 529-579 75-114 (135)
404 PRK05431 seryl-tRNA synthetase 60.0 56 0.0012 38.7 10.6 78 608-689 27-104 (425)
405 KOG0942 E3 ubiquitin protein l 60.0 8.2 0.00018 48.1 3.7 29 419-447 25-53 (1001)
406 PF15290 Syntaphilin: Golgi-lo 59.9 1.2E+02 0.0025 33.2 11.7 32 611-642 70-101 (305)
407 KOG4657 Uncharacterized conser 59.9 2.4E+02 0.0051 29.9 16.0 9 621-629 98-106 (246)
408 PF07989 Microtub_assoc: Micro 59.6 1.1E+02 0.0024 26.7 9.7 26 608-633 6-31 (75)
409 PRK00736 hypothetical protein; 59.6 59 0.0013 27.8 7.8 10 663-672 38-47 (68)
410 KOG4438 Centromere-associated 59.5 3.4E+02 0.0074 31.6 24.8 14 531-544 176-189 (446)
411 KOG0288 WD40 repeat protein Ti 58.9 3.4E+02 0.0074 31.4 17.0 17 564-580 45-61 (459)
412 PF15188 CCDC-167: Coiled-coil 58.8 62 0.0013 29.0 7.9 27 662-688 40-66 (85)
413 PF13747 DUF4164: Domain of un 58.7 1.4E+02 0.0031 27.0 11.5 41 635-675 37-77 (89)
414 PRK00409 recombination and DNA 58.6 2.5E+02 0.0054 36.2 16.7 10 196-205 225-234 (782)
415 KOG2077 JNK/SAPK-associated pr 58.6 80 0.0017 37.6 10.9 52 608-659 328-379 (832)
416 KOG3433 Protein involved in me 58.4 1.1E+02 0.0024 31.2 10.5 70 616-685 74-143 (203)
417 PF15188 CCDC-167: Coiled-coil 58.1 50 0.0011 29.6 7.3 24 616-639 5-28 (85)
418 KOG4427 E3 ubiquitin protein l 57.8 13 0.00029 45.2 4.8 20 398-417 30-49 (1096)
419 PRK02793 phi X174 lysis protei 57.6 59 0.0013 28.2 7.6 10 672-681 43-52 (72)
420 KOG2129 Uncharacterized conser 57.2 3.6E+02 0.0078 31.2 23.1 20 611-630 255-274 (552)
421 PLN02939 transferase, transfer 57.1 5.8E+02 0.012 33.5 21.8 21 559-579 232-252 (977)
422 PTZ00121 MAEBL; Provisional 57.0 6.6E+02 0.014 34.2 34.0 13 951-963 1929-1941(2084)
423 TIGR00293 prefoldin, archaeal 57.0 1.8E+02 0.0039 27.9 12.0 27 611-637 8-34 (126)
424 PF04880 NUDE_C: NUDE protein, 57.0 17 0.00037 36.8 4.8 20 662-681 28-47 (166)
425 cd00584 Prefoldin_alpha Prefol 56.5 1.9E+02 0.0042 27.8 12.2 31 656-686 92-122 (129)
426 PF00170 bZIP_1: bZIP transcri 56.3 1.2E+02 0.0026 25.4 9.4 36 646-681 28-63 (64)
427 KOG0972 Huntingtin interacting 56.0 3.1E+02 0.0068 30.1 15.1 113 562-684 229-354 (384)
428 PF13747 DUF4164: Domain of un 56.0 1.6E+02 0.0034 26.7 12.7 36 608-643 38-73 (89)
429 PF06160 EzrA: Septation ring 56.0 4.8E+02 0.01 32.2 29.1 248 426-684 7-271 (560)
430 PF10458 Val_tRNA-synt_C: Valy 55.9 89 0.0019 26.5 8.4 14 662-675 50-63 (66)
431 PF02841 GBP_C: Guanylate-bind 55.9 3.4E+02 0.0073 30.4 16.6 13 672-684 284-296 (297)
432 COG2900 SlyX Uncharacterized p 55.8 83 0.0018 27.1 7.8 34 655-688 26-59 (72)
433 KOG2391 Vacuolar sorting prote 55.7 76 0.0016 35.6 9.7 21 250-270 126-146 (365)
434 COG2900 SlyX Uncharacterized p 55.7 1E+02 0.0022 26.5 8.3 34 655-688 19-52 (72)
435 PF07058 Myosin_HC-like: Myosi 55.3 1.2E+02 0.0026 33.5 10.9 73 612-684 3-85 (351)
436 PF05529 Bap31: B-cell recepto 54.9 87 0.0019 32.6 10.0 22 666-687 162-183 (192)
437 KOG3650 Predicted coiled-coil 54.8 43 0.00094 30.2 6.3 48 643-690 55-102 (120)
438 PF13094 CENP-Q: CENP-Q, a CEN 54.8 98 0.0021 31.2 10.1 62 626-687 23-84 (160)
439 PF03961 DUF342: Protein of un 54.6 77 0.0017 37.9 10.8 69 616-684 334-408 (451)
440 KOG0162 Myosin class I heavy c 54.6 39 0.00084 41.3 7.8 30 470-499 695-724 (1106)
441 PF12004 DUF3498: Domain of un 54.2 4.2 9.1E-05 48.3 0.0 27 519-545 374-400 (495)
442 KOG3564 GTPase-activating prot 53.8 1.2E+02 0.0026 35.5 11.2 57 617-673 50-106 (604)
443 KOG4001 Axonemal dynein light 53.4 1.3E+02 0.0028 31.1 10.1 15 330-344 59-73 (259)
444 PF14988 DUF4515: Domain of un 53.2 3E+02 0.0066 29.1 26.1 179 506-687 7-199 (206)
445 PRK00846 hypothetical protein; 53.1 1.3E+02 0.0029 26.4 9.0 20 665-684 41-60 (77)
446 TIGR00414 serS seryl-tRNA synt 52.5 90 0.002 36.9 10.7 78 608-688 29-106 (418)
447 PF08647 BRE1: BRE1 E3 ubiquit 52.5 1.9E+02 0.0041 26.5 12.9 9 639-647 47-55 (96)
448 PF07851 TMPIT: TMPIT-like pro 52.2 1.4E+02 0.003 33.9 11.4 24 975-998 270-293 (330)
449 PRK10698 phage shock protein P 52.1 3.3E+02 0.0071 29.2 24.0 11 677-687 206-216 (222)
450 PF01166 TSC22: TSC-22/dip/bun 52.1 23 0.00051 28.9 3.8 31 658-688 14-44 (59)
451 TIGR02894 DNA_bind_RsfA transc 52.0 1.1E+02 0.0025 30.7 9.4 11 618-628 106-116 (161)
452 PF08581 Tup_N: Tup N-terminal 52.0 1.7E+02 0.0037 25.9 12.3 61 622-682 10-74 (79)
453 PF06632 XRCC4: DNA double-str 51.8 2.2E+02 0.0049 32.6 13.2 17 666-682 195-211 (342)
454 PF04912 Dynamitin: Dynamitin 51.7 3.4E+02 0.0073 31.7 15.3 60 621-683 327-386 (388)
455 PF02996 Prefoldin: Prefoldin 51.5 1E+02 0.0022 29.2 9.1 38 649-686 82-119 (120)
456 PF05262 Borrelia_P83: Borreli 51.3 5.1E+02 0.011 31.2 19.6 8 286-293 25-32 (489)
457 PF04899 MbeD_MobD: MbeD/MobD 51.2 1.6E+02 0.0035 25.4 9.6 21 655-675 46-66 (70)
458 PF12795 MscS_porin: Mechanose 50.8 3.5E+02 0.0077 29.2 21.2 28 607-634 148-175 (240)
459 TIGR02231 conserved hypothetic 49.9 1.5E+02 0.0032 36.3 12.4 77 608-684 77-171 (525)
460 PF06818 Fez1: Fez1; InterPro 49.3 3.4E+02 0.0074 28.6 20.1 150 515-675 18-201 (202)
461 PF06156 DUF972: Protein of un 49.2 1.1E+02 0.0024 28.7 8.6 54 612-665 4-57 (107)
462 TIGR02971 heterocyst_DevB ABC 49.2 4.3E+02 0.0094 29.8 18.1 144 515-676 56-204 (327)
463 PRK09841 cryptic autophosphory 49.1 6.8E+02 0.015 32.0 22.5 174 517-711 240-423 (726)
464 PF10458 Val_tRNA-synt_C: Valy 49.1 1E+02 0.0022 26.1 7.6 52 634-685 1-66 (66)
465 PF05335 DUF745: Protein of un 48.7 3.4E+02 0.0073 28.3 18.0 132 548-679 41-172 (188)
466 PF03148 Tektin: Tektin family 48.5 5E+02 0.011 30.3 33.3 230 453-686 7-345 (384)
467 PF14282 FlxA: FlxA-like prote 48.4 1.1E+02 0.0024 28.7 8.5 58 630-687 19-80 (106)
468 KOG4005 Transcription factor X 48.4 2.5E+02 0.0055 29.8 11.6 94 556-660 55-148 (292)
469 PF06103 DUF948: Bacterial pro 48.4 2E+02 0.0044 25.7 10.8 69 611-679 21-89 (90)
470 PF12709 Kinetocho_Slk19: Cent 48.3 2.1E+02 0.0045 25.8 11.3 71 614-684 2-82 (87)
471 PF10779 XhlA: Haemolysin XhlA 48.0 1E+02 0.0022 26.5 7.6 51 625-675 1-51 (71)
472 PF06810 Phage_GP20: Phage min 47.7 1.2E+02 0.0026 30.6 9.2 68 619-686 2-72 (155)
473 PF04899 MbeD_MobD: MbeD/MobD 47.7 1.9E+02 0.004 25.1 10.4 65 620-684 3-68 (70)
474 KOG3859 Septins (P-loop GTPase 47.5 2.9E+02 0.0064 30.4 12.3 77 611-687 321-399 (406)
475 TIGR02977 phageshock_pspA phag 47.3 3.8E+02 0.0082 28.6 19.9 123 533-675 29-151 (219)
476 PF15450 DUF4631: Domain of un 47.2 5.8E+02 0.013 30.7 30.8 222 457-682 185-443 (531)
477 PF06810 Phage_GP20: Phage min 46.9 1.6E+02 0.0034 29.7 9.9 68 616-683 13-87 (155)
478 PLN02320 seryl-tRNA synthetase 46.7 1.1E+02 0.0024 36.8 10.2 79 609-692 93-171 (502)
479 PLN03188 kinesin-12 family pro 46.7 8.8E+02 0.019 32.6 22.5 145 514-672 1100-1254(1320)
480 PRK09841 cryptic autophosphory 46.6 7.4E+02 0.016 31.7 22.5 145 495-664 241-397 (726)
481 PF08172 CASP_C: CASP C termin 46.6 4.3E+02 0.0092 28.9 14.4 103 563-665 2-135 (248)
482 PF11365 DUF3166: Protein of u 46.3 1.5E+02 0.0032 27.3 8.5 74 611-684 3-95 (96)
483 PF11180 DUF2968: Protein of u 46.2 3.5E+02 0.0076 28.1 12.1 75 608-682 111-185 (192)
484 smart00502 BBC B-Box C-termina 45.9 2.6E+02 0.0056 26.2 16.2 102 524-641 3-104 (127)
485 PRK10361 DNA recombination pro 45.8 6.1E+02 0.013 30.5 27.9 174 481-686 20-193 (475)
486 PF05377 FlaC_arch: Flagella a 45.7 92 0.002 25.5 6.3 39 625-663 2-40 (55)
487 PF14712 Snapin_Pallidin: Snap 45.5 2.3E+02 0.005 25.5 11.1 77 610-686 15-92 (92)
488 PF09789 DUF2353: Uncharacteri 45.3 5.1E+02 0.011 29.4 25.6 172 497-682 12-227 (319)
489 PF07716 bZIP_2: Basic region 44.8 1.2E+02 0.0027 24.4 7.2 42 639-680 13-54 (54)
490 PRK15178 Vi polysaccharide exp 44.8 6E+02 0.013 30.1 16.9 136 527-687 222-366 (434)
491 PHA02414 hypothetical protein 44.3 1.7E+02 0.0037 26.6 8.2 70 613-682 1-81 (111)
492 PF06103 DUF948: Bacterial pro 44.2 2.4E+02 0.0051 25.3 11.5 74 614-687 17-90 (90)
493 KOG0240 Kinesin (SMY1 subfamil 44.0 6.8E+02 0.015 30.5 20.4 174 509-684 343-536 (607)
494 KOG4460 Nuclear pore complex, 43.7 6.6E+02 0.014 30.3 19.8 158 516-686 576-737 (741)
495 PF11544 Spc42p: Spindle pole 43.6 2.3E+02 0.0049 24.9 9.5 61 627-688 2-62 (76)
496 PHA03011 hypothetical protein; 43.6 1.7E+02 0.0036 26.7 8.2 64 629-692 56-119 (120)
497 PRK10929 putative mechanosensi 43.5 9.7E+02 0.021 32.2 28.3 216 474-693 25-258 (1109)
498 PRK13169 DNA replication intia 43.5 1.2E+02 0.0027 28.6 7.9 50 609-658 8-57 (110)
499 COG3206 GumC Uncharacterized p 43.2 6.5E+02 0.014 30.1 20.8 171 518-692 185-369 (458)
500 PF06705 SF-assemblin: SF-asse 43.0 4.7E+02 0.01 28.4 27.2 173 502-686 15-189 (247)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.6e-132 Score=1200.29 Aligned_cols=961 Identities=31% Similarity=0.438 Sum_probs=706.7
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCcccccccccCCccc
Q 001598 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1047)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1047)
|||++.|.+||+.|++.++||.|.+++|..||..+||||||+||++||+|||++||.+|+..+...+|||||||||||+|
T Consensus 362 gId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiF 441 (1463)
T COG5022 362 GIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIF 441 (1463)
T ss_pred CCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999877667899999999999999
Q ss_pred cCCchhhhhhhhchhHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhc-CcccchhcchhhhcCCCCChHH
Q 001598 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEK-KPGGIIALLDEACMFPRSTHET 159 (1047)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~-~~~Gil~lLdee~~~~~~~d~~ 159 (1047)
+.|||||||||||||||||+||+|||++|||||.+|||+|++|+|.|||+||||||+ .|.|||++|||||++|.+||++
T Consensus 442 EkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s 521 (1463)
T COG5022 442 EKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDES 521 (1463)
T ss_pred ccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchH
Confidence 999999999999999999999999999999999999999999999999999999998 3559999999999999999999
Q ss_pred HHHHHHHHhc--CCCCccCCCCCCCCcEEEeeccceEEeccchhhhcchhhHHHHHHHHhhcCCcccccccccchhhccC
Q 001598 160 FAQKLYQTFK--NHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSK 237 (1047)
Q Consensus 160 ~~~kl~~~~~--~~~~~~~~~~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~~ 237 (1047)
|.+||++.+. +++.|.+||++...|+|+||||+|+|+++||++||+|++++++++|+.+|+|+|+..||+... +..+
T Consensus 522 ~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~-~~~~ 600 (1463)
T COG5022 522 FTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEE-NIES 600 (1463)
T ss_pred HHHHHHHHhccccCccccccccCCCceEEEeecccceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhh-hccc
Confidence 9999999886 568899999999999999999999999999999999999999999999999999999999543 3334
Q ss_pred CCCCCchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhHHHHHHhhCCCCccChHHHHH
Q 001598 238 TSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVD 317 (1047)
Q Consensus 238 ~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~v~~QLr~~gvle~~~i~~~Gyp~r~~~~~F~~ 317 (1047)
.++++|+|+.||.||.+||++|++|+||||||||||++|+|+.||+.+|++|||||||+|+|||+|+|||+||+|+||+.
T Consensus 601 K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~ 680 (1463)
T COG5022 601 KGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQ 680 (1463)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHhcCCceeEeeCCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccCC-----CCccHHHHHHHHHhhcCCC--CceeccceeeecccccccchhhhhhcchhhHHHHHHHhhhccc
Q 001598 318 RFGILASKVLD-----GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLS 390 (1047)
Q Consensus 318 ry~~l~~~~~~-----~~~~~~~~~~~il~~~~~~--~~~iG~TkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~~~ 390 (1047)
||++|.|.... +..|.+.+|..||..+.++ .||+|+||||||+|+++.||.+|+..++.+++.||++|||++.
T Consensus 681 RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~ 760 (1463)
T COG5022 681 RYRILSPSKSWTGEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYL 760 (1463)
T ss_pred HHHHhcccccccccccchhHHHHHHHHHHHhhcCChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997432 2346899999999998776 6999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhhHHhhhhHhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 001598 391 RKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQ-TGMRGMAARNELRFRR 469 (1047)
Q Consensus 391 R~~~~~~r~a~i~iQa~~Rg~laR~~~~~~r~~~aA~~IQ~~~R~~~~Rk~y~~~r~a~i~iQ-~~~Rg~~ar~~~~~~~ 469 (1047)
|++|.+..+.+..+|...+|+..|+....--...+++.+|..||....|+.|...-..++.+| ..+|+...+.......
T Consensus 761 rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~ 840 (1463)
T COG5022 761 RRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEF 840 (1463)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999877766667799999999999999999999999999999 7778877777666677
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 470 QTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKR 549 (1047)
Q Consensus 470 ~~~aa~~IQ~~~R~~~~r~~~~~~~~a~v~iQ~~~R~~~ark~l~~l~~~a~~~~~l~~~~~~LE~kv~el~~~l~~e~~ 549 (1047)
..++++.+|++||.+..+.+|..+.+.++.+|+.+|...|++++..++.+.+++..+.....+|+.++.++...+.....
T Consensus 841 ~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~~r~~~a~r~~~e~k~~~~~~~~l~~~~~~l~~~~~el~~~~~s~~~ 920 (1463)
T COG5022 841 SLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLI 920 (1463)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhhccchhhh
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999877662111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchh---hHHHHHHHHHHHHHHHHHHH
Q 001598 550 MRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVI---DHAVVEELTSENEKLKTLVS 626 (1047)
Q Consensus 550 ~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~---~~~~~~~L~~e~~~L~~~l~ 626 (1047)
.+... +...... ++.-+.... +++.+.. ...++..+..+..+|++...
T Consensus 921 ~~~~~---k~e~~a~-------lk~~l~~~d-------------------~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 971 (1463)
T COG5022 921 ENLEF---KTELIAR-------LKKLLNNID-------------------LEEGPSIEYVKLPELNKLHEVESKLKETSE 971 (1463)
T ss_pred hhhHH---HHHHHHH-------HHHHhhccc-------------------ccchhHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 11000 0011111 111111100 0000000 01133344444444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHhccccCCccccccccCC
Q 001598 627 SLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE---NQILRQQSLLSTPIKKMSEHISA 703 (1047)
Q Consensus 627 ~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E---~~~L~qq~~~~s~~~~~~~~~~~ 703 (1047)
+....+...+....+.... ..++......+.....+...+.+..+.++.. +..+.......+.. ....+.
T Consensus 972 ~~~~~~k~~~~~~~~~~~~----~~el~~~~~~l~~~~~~~~~l~~~~~~lk~~~~~~~~l~~~~~~~~s~---~~~~~~ 1044 (1463)
T COG5022 972 EYEDLLKKSTILVREGNKA----NSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSE---STELSI 1044 (1463)
T ss_pred HHHHHHHHhhHHHHhcccH----HHHHHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccc---hhhhhc
Confidence 3332222222222222111 1122222222222222222222222222222 22222211110000 000000
Q ss_pred CccccCCCCCCCccccCCCCCCCCCCcccCCCCcchHhhhhhhhhhhhhHHHHHHHhh-hccCCC-CCCcchHHHHH-HH
Q 001598 704 PATQSLENGHHVIEENISNEPQSATPVKKLGTESDSKLRRSHIEHQHENVDALINCVA-KNLGYC-NGKPVAAFTIY-KC 780 (1047)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~e~~~~Ll~~i~-~~~~~~-~~~p~pA~il~-~c 780 (1047)
........+.+........+...... -.++. . ..-....+..+....+++.+. .++.+. ..-+.||..+. ..
T Consensus 1045 ~~~~~~~~~~~~~~~~~l~~~~~~l~-~~r~~--~--~~~~~q~~~~e~t~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 1119 (1463)
T COG5022 1045 LKPLQKLKGLLLLENNQLQARYKALK-LRREN--S--LLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIV 1119 (1463)
T ss_pred cCcccchhhhhhHHHHHhhhhHhhhh-hcCcc--c--chhHHHHHHHHhhhhhhhhhccchhhhhcccccchhhHHHHHH
Confidence 00000000000000000000000000 00000 0 000011244666777777776 433333 22234655554 44
Q ss_pred Hhcccc-hhhhhhHHHHHHHHHHHHhhc---ccCCCcccchhHhhHHHHHHHHHHHhhhcCCCCCCCCCCCCCcccchhh
Q 001598 781 LLHWKS-FEAERTSVFDRLIQMIGSAIE---NEDDNDHMAYWLSNTSTLLFLLQRSLKAAGASGATPHKKPPTATSLFGR 856 (1047)
Q Consensus 781 ~~~~~~-~~~e~~~ll~~i~~~I~~~i~---~~~~~~~lafWLsN~~~Ll~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (1047)
..+|+. +..+...++...+..+..+.. +.+-...+.||.+|...+++.-- .....+ ...+..
T Consensus 1120 ~~~~k~~l~~~~~~~~~~~~~~le~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-------~~~~~~-------~~~~~~ 1185 (1463)
T COG5022 1120 AQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPP-------FAALSE-------KRLYQS 1185 (1463)
T ss_pred HHhhccchHHhhhhHHHHHHhhccchhccccchhccccccccccccccCCCCCc-------hhhcch-------hhhhHh
Confidence 447877 555666666666666666543 22334467899999988653100 000000 000000
Q ss_pred cccccCCCCCchhhhhhhhhHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----c---CCCCCC
Q 001598 857 MAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCI----Q---APRTSK 929 (1047)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~f~q~L~~~~~~iy~~l~~~~~k~L~~~l~~~i----~---~~~~~~ 929 (1047)
....+.+. .. ..++. ..+..|.++..++|..|.... .+.+++.... - .+++..
T Consensus 1186 ~~~d~~~~--------~s-~s~v~---------~l~~~l~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~~~~ 1245 (1463)
T COG5022 1186 ALYDEKSK--------LS-SSEVN---------DLKNELIALFSKIFSGWPRGD--KLKKLISEGWVPTEYSTSLKGFNN 1245 (1463)
T ss_pred hhhccccc--------cc-HHHHH---------HHHHHHHHHHHhccccchhhh--hhhhhhhhccchhhhccccccccc
Confidence 00000100 00 11222 334556667888888888775 3333332221 1 111111
Q ss_pred CCcccCCCCCCCCCccccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHhhhhcCCCCCCchhhHHhhc
Q 001598 930 GSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAG 1009 (1047)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~qlf~fin~~lfN~Ll~r~~~cs~s~g~qIr~n 1009 (1047)
+......+...+.++++.+++++.+++..+.+.+.+..-.++++.-++|+.+||.|.++.....|+.|.++.+|
T Consensus 1246 ------~~~~~~~~~~~~~~~ll~~~n~i~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~n~L~~~~~~~~~k~~~~~~~n 1319 (1463)
T COG5022 1246 ------LNKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSATEVNYN 1319 (1463)
T ss_pred ------hhhcccCcccCcHHHHHHHHHHHHHHHHHhhcchhhhhHHHHhHhhhcchhhhhhhhcccCccchhhccccccc
Confidence 01112245667788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcccccCCchHHhhhHHHHHhhhhccc
Q 001598 1010 LAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVCHF 1046 (1047)
Q Consensus 1010 ls~Le~W~~~~~~~~~~~~~~~L~~i~Qa~~lL~~~~ 1046 (1047)
.+.+++||+.+| ...+..+|+++.||++.+++.+
T Consensus 1320 ~~~~~~w~~~~~---i~~~~~~l~~l~q~~k~~~~~~ 1353 (1463)
T COG5022 1320 SEELDDWCREFE---ISDVDEELEELIQAVKVLQLLK 1353 (1463)
T ss_pred chhhhHHHHhhc---ccchHHHHHHHHhhhhhhhhhh
Confidence 999999999998 4455579999999999998754
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=2e-106 Score=983.27 Aligned_cols=416 Identities=33% Similarity=0.540 Sum_probs=390.0
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCcccccccccCCccc
Q 001598 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1047)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1047)
|||+++|.++||+|++.++||.|+++++++||..+||||||+||++||+|||.+||.+|.++.....+||||||||||+|
T Consensus 396 gv~~~~L~~~L~~~~~~~~~e~i~~~~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IGiLDI~GFE~f 475 (821)
T PTZ00014 396 FLDYESLKKELTVKVTYAGNQKIEGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVF 475 (821)
T ss_pred CCCHHHHHHHhhceEEEeCCeeEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEEeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999877667889999999999999
Q ss_pred cCCchhhhhhhhchhHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCcccchhcchhhhcCCCCChHHH
Q 001598 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1047)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~~ 160 (1047)
+.|||||||||||||||||+|++|||+.||+||.+|||+|++|+|.||++|||||++||.|||++|||||++|++||++|
T Consensus 476 ~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f 555 (821)
T PTZ00014 476 KNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKF 555 (821)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCccCCCC-CCCCcEEEeeccceEEeccchhhhcchhhHHHHHHHHhhcCCcccccccccchhhccCCC
Q 001598 161 AQKLYQTFKNHKRFSKPKL-ARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTS 239 (1047)
Q Consensus 161 ~~kl~~~~~~~~~~~~~~~-~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~ 239 (1047)
++||++++++|++|.+|+. ....|+|+||||+|+|+++||++||+|+++++++++|++|+++||+.||+.......+..
T Consensus 556 ~~kl~~~~~~~~~f~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~ 635 (821)
T PTZ00014 556 VSSCNTNLKNNPKYKPAKVDSNKNFVIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEKGKLA 635 (821)
T ss_pred HHHHHHHhcCCCCccCCCCCCCCceEEEEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhccccccccccc
Confidence 9999999999999999885 467999999999999999999999999999999999999999999999986543333344
Q ss_pred CCCchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhHHHHHHhhCCCCccChHHHHHHH
Q 001598 240 KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRF 319 (1047)
Q Consensus 240 ~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~v~~QLr~~gvle~~~i~~~Gyp~r~~~~~F~~ry 319 (1047)
+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||..+|++||||+||||+|||+++|||+|++|.+|+.||
T Consensus 636 k~~tv~s~Fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY 715 (821)
T PTZ00014 636 KGQLIGSQFLNQLDSLMSLINSTEPHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQF 715 (821)
T ss_pred CCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCC-CccHHHHHHHHHhhcCC--CCceeccceeeecccccccchhhhhhcch---hhHHHHHHHhhhcccchh
Q 001598 320 GILASKVLDG-SSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARRTEVLG---RSASIIQRKVRSYLSRKN 393 (1047)
Q Consensus 320 ~~l~~~~~~~-~~~~~~~~~~il~~~~~--~~~~iG~TkVFlr~~~~~~Le~~r~~~l~---~aa~~IQ~~~R~~~~R~~ 393 (1047)
++|.+..... ..|+++.|+.||..+++ ++|++|+||||||+++++.||..|.+++. .+++.||++||||++|++
T Consensus 716 ~~L~~~~~~~~~~d~k~~~~~il~~~~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~ 795 (821)
T PTZ00014 716 KYLDLAVSNDSSLDPKEKAEKLLERSGLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRK 795 (821)
T ss_pred HhcCcccccCCCCCHHHHHHHHHHHcCCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998875433 45899999999999876 48999999999999999999998888764 578889999999999999
Q ss_pred hhhhhhhHHhhhhHhhhhhhhhh
Q 001598 394 YIMLRRSAIHIQAACRGQLARTV 416 (1047)
Q Consensus 394 ~~~~r~a~i~iQa~~Rg~laR~~ 416 (1047)
|.+++.+++.||++||||++++.
T Consensus 796 ~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 796 VRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99888888888888888887654
No 3
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=6.6e-103 Score=927.51 Aligned_cols=457 Identities=61% Similarity=0.961 Sum_probs=439.9
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCC-CCCCCcccccccccCCcc
Q 001598 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQ-DPNSKSLIGVLDIYGFES 79 (1047)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~-~~~~~~~IgvLDi~GFE~ 79 (1047)
|||++.|..||+.|.+.++++.|+++++..+|...||++||.||++||+|+|+.||.+|+. ++....+||||||||||+
T Consensus 301 g~~~~~l~~~L~~r~i~~~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEs 380 (862)
T KOG0160|consen 301 GCDEEALEQWLSKRKILTARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFES 380 (862)
T ss_pred CCCHHHHHHHHHHHHhhcccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccc
Confidence 8999999999999999999999999999999999999999999999999999999999987 555689999999999999
Q ss_pred ccCCchhhhhhhhchhHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCcccchhcchhhhcCCCCChHH
Q 001598 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1047)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~ 159 (1047)
|+.|||||||||||||||||+||+|||++||+||.+|||+|+.|+|.||++|+++|++ |.||++||||+|++|.++|++
T Consensus 381 F~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~ 459 (862)
T KOG0160|consen 381 FEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDET 459 (862)
T ss_pred cccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcch
Confidence 9999999999999999999999999999999999999999999999999999999999 789999999999999999999
Q ss_pred HHHHHHHHhcCCCCccCCCCCCCCcEEEeeccceEEeccchhhhcchhhHHHHHHHHhhcCCcccccccccchhhccCCC
Q 001598 160 FAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTS 239 (1047)
Q Consensus 160 ~~~kl~~~~~~~~~~~~~~~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~ 239 (1047)
|..||++.+.+|+.|.+|++++..|+|.||||+|+|++++|++||+|+|++++.+++..|+|+|+..+|++...+..+.+
T Consensus 460 ~a~KL~~~~~~~~~f~kpr~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~~~~ 539 (862)
T KOG0160|consen 460 LAQKLYQTLKRNKRFTKPRLSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSSAKS 539 (862)
T ss_pred HHHHHHHHhccCCccCCCCCCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997665555566
Q ss_pred CCCchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhHHHHHHhhCCCCccChHHHHHHH
Q 001598 240 KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRF 319 (1047)
Q Consensus 240 ~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~v~~QLr~~gvle~~~i~~~Gyp~r~~~~~F~~ry 319 (1047)
+++||+++|+.+|..||++|++|+||||||||||..+.|+.||+.+|++|||+|||||++||+++|||.|++|.||+.||
T Consensus 540 ~~~tv~s~fk~~l~~Lm~~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~ 619 (862)
T KOG0160|consen 540 KRSTVGSQFKLQLISLMETLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRY 619 (862)
T ss_pred hcccHHHHHHHHHHHHHHHhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCccHHHHHHHHHhhcCCCCceeccceeeecccccccchhhhhhcchhhHHHHHHHhhhcccchhhhhhhh
Q 001598 320 GILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRR 399 (1047)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~~il~~~~~~~~~iG~TkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~~~R~~~~~~r~ 399 (1047)
++|+| .. ...|+...|+.||+..+.+.||+|+||||+++|+++.||.+|..++..+++.||+.+|+|+.|++|..+|+
T Consensus 620 ~~L~~-~~-~~~~~~~~~~~il~~~~~~~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~ 697 (862)
T KOG0160|consen 620 GILMP-ND-SASDDLSLCKVILEKLGLELYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRS 697 (862)
T ss_pred hhcCc-ch-hcccchHHHHHHHHHhchhceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 33 23456999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhHhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 400 SAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARN 463 (1047)
Q Consensus 400 a~i~iQa~~Rg~laR~~~~~~r~~~aA~~IQ~~~R~~~~Rk~y~~~r~a~i~iQ~~~Rg~~ar~ 463 (1047)
+++.||+.+||+++|+ ..+ +..||+.||+.||+|..|+.|..++.+++.+|+.+||+.+|+
T Consensus 698 ~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 698 AVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998 334 778999999999999999999999999999999999998887
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.4e-97 Score=938.45 Aligned_cols=654 Identities=35% Similarity=0.543 Sum_probs=510.8
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCcccccccccCCccc
Q 001598 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1047)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1047)
||+++.|.++++++.+.++++-|.+..+.+|+..+..++||++|+|||.|+|.+||.+|.......+|||||||+|||+|
T Consensus 382 g~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~alAk~lYerlF~wlV~riN~sld~~~~~~~fIgvLDiaGFEIf 461 (1930)
T KOG0161|consen 382 GINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVEALAKALYERLFGWLVKRINKSLDSKQQRDYFIGVLDIAGFEIF 461 (1930)
T ss_pred CCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcceeeeecccccc
Confidence 79999999999999999999999999999999999999999999999999999999999877778899999999999999
Q ss_pred cCCchhhhhhhhchhHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCcccchhcchhhhcCCCCChHH
Q 001598 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1047)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~ 159 (1047)
+.||||||||||+||||||+||+|+|.+||++|.+|||.|.+|+| .|-+||||||+++ .||+++|||||++|++||.+
T Consensus 462 e~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEkp-~Gi~slLdEEc~~PkAtd~t 540 (1930)
T KOG0161|consen 462 EFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEKP-MGILSLLDEECVVPKATDKT 540 (1930)
T ss_pred CcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhch-hhHHHHHHHHHhcCCCccch
Confidence 999999999999999999999999999999999999999999999 8999999999985 59999999999999999999
Q ss_pred HHHHHHHHh-cCCCCccCCC--CCCCCcEEEeeccceEEeccchhhhcchhhHHHHHHHHhhcCCcccccccccchh---
Q 001598 160 FAQKLYQTF-KNHKRFSKPK--LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAE--- 233 (1047)
Q Consensus 160 ~~~kl~~~~-~~~~~~~~~~--~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~--- 233 (1047)
|++||...| |+|+.|.+|+ ....+|.|.||||+|.|+++||++||+|++++.++.+|..|++++|+.||.+...
T Consensus 541 f~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~ 620 (1930)
T KOG0161|consen 541 FLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTVDYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAA 620 (1930)
T ss_pred HHHHHHHHhhccCccccCcccccchhhhheeeecceeccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccch
Confidence 999999998 8999999997 4568999999999999999999999999999999999999999999999987311
Q ss_pred --------hccCCCCCCchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhHHHHHHhhC
Q 001598 234 --------ESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAG 305 (1047)
Q Consensus 234 --------~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~v~~QLr~~gvle~~~i~~~G 305 (1047)
..++++.|.||+..++.+|+.||++|++|+|||||||.||+.|.|+.+|.++|+.||+|.||||+|||++.|
T Consensus 621 ~~~~~~~~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~G 700 (1930)
T KOG0161|consen 621 AAKGGEALKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQG 700 (1930)
T ss_pred hhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhh
Confidence 123445678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccChHHHHHHHhhhhcccCC-CCccHHHHHHHHHhhcCCC--CceeccceeeecccccccchhhhhhcchhhHHHHH
Q 001598 306 YPTRKPFDEFVDRFGILASKVLD-GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQ 382 (1047)
Q Consensus 306 yp~r~~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~il~~~~~~--~~~iG~TkVFlr~~~~~~Le~~r~~~l~~aa~~IQ 382 (1047)
||.|++|.+|..||.++.|.... +..|.+.+|..|+..+..+ -|++|.||||||+|+++.||.+|+..+....+.+|
T Consensus 701 fPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQ 780 (1930)
T KOG0161|consen 701 FPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQ 780 (1930)
T ss_pred CccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999955555443 3467799999999988654 69999999999999999999999999999999999
Q ss_pred HHhhhcccchhhhhh---hhhHHhhhhHhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 383 RKVRSYLSRKNYIML---RRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGM 459 (1047)
Q Consensus 383 ~~~R~~~~R~~~~~~---r~a~i~iQa~~Rg~laR~~~~~~r~~~aA~~IQ~~~R~~~~Rk~y~~~r~a~i~iQ~~~Rg~ 459 (1047)
+.+|||++|+.|.+. ..|+.+||+++|.|+. .|.|.|.+.|.++++.+..-. +..
T Consensus 781 A~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~-------------------lr~w~W~~Lf~kvkPLL~~~~---~ee 838 (1930)
T KOG0161|consen 781 AAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLK-------------------LRTWPWWRLFTKVKPLLKVTK---TEE 838 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------hccCHHHHHHHHHHHHHHhhh---hHH
Confidence 999999999998877 4688899999998865 455667777777766432221 111
Q ss_pred HHHHH---HHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 460 AARNE---LRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQ 536 (1047)
Q Consensus 460 ~ar~~---~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~v~iQ~~~R~~~ark~l~~l~~~a~~~~~l~~~~~~LE~k 536 (1047)
..+.. +...+...... ..-|.-+. ....++......+|.. ..+++. ....+......+...+..+|..
T Consensus 839 ~~~~~~~e~~~l~~~l~~~---e~~~~ele-~~~~~~~~e~~~l~~~---l~~e~~--~~~~aee~~~~~~~~k~~le~~ 909 (1930)
T KOG0161|consen 839 EMRAKEEEIQKLKEELQKS---ESKRKELE-EKLVKLLEEKNDLQEQ---LQAEKE--NLAEAEELLERLRAEKQELEKE 909 (1930)
T ss_pred HHHHhHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 11111000000 00000000 0011111111111110 111111 1222344555666667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHH
Q 001598 537 VEELTWRLQLEKRMRVDMEEAKT---QENAKLQSALQEMQLQFKESKEKLM--------------------KEIEVAKKE 593 (1047)
Q Consensus 537 v~el~~~l~~e~~~~~~le~~~~---~e~~~L~~~l~~le~~l~~~~~~l~--------------------~e~~~~~~~ 593 (1047)
+.+++.++..+++....++..+. ++...+.+.+++++..+.+++.+.. .++.+.+++
T Consensus 910 l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~ 989 (1930)
T KOG0161|consen 910 LKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKE 989 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766665555544322 3444455555555444444433221 122222233
Q ss_pred hhcc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 594 AEKV-PVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEE 672 (1047)
Q Consensus 594 ~ee~-~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~ 672 (1047)
+++. ..+.++....+++...+.+.+.++++.+++++..++..++...++++..+++..++..+++.+.++.....+|+.
T Consensus 990 lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~ 1069 (1930)
T KOG0161|consen 990 LEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDN 1069 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3222 222333444788899999999999999999999999999999999988888888887777777666666666666
Q ss_pred HHHhHHHHHHHHHH
Q 001598 673 KVSDMETENQILRQ 686 (1047)
Q Consensus 673 ~l~~Le~E~~~L~q 686 (1047)
++.+.+.|+..+..
T Consensus 1070 ~l~kke~El~~l~~ 1083 (1930)
T KOG0161|consen 1070 QLKKKESELSQLQS 1083 (1930)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655444
No 5
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=1.6e-98 Score=904.15 Aligned_cols=374 Identities=83% Similarity=1.313 Sum_probs=361.1
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCcccccccccCCccc
Q 001598 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1047)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1047)
|||+++|.++||+|++.+++|.|++++++++|..+||+|||+||++||+|||.+||.+|+++..+..+||||||||||+|
T Consensus 301 gv~~~~L~~~L~~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f 380 (674)
T cd01384 301 MCDEKALEDALCKRVMVTPEEVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDPDSKSLIGVLDIYGFESF 380 (674)
T ss_pred CCCHHHHHHHhcccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999987777899999999999999
Q ss_pred cCCchhhhhhhhchhHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCcccchhcchhhhcCCCCChHHH
Q 001598 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1047)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~~ 160 (1047)
+.||||||||||||||||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||++|
T Consensus 381 ~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f 460 (674)
T cd01384 381 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETF 460 (674)
T ss_pred CcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCccCCCCCCCCcEEEeeccceEEeccchhhhcchhhHHHHHHHHhhcCCcccccccccchhhccCCCC
Q 001598 161 AQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTSK 240 (1047)
Q Consensus 161 ~~kl~~~~~~~~~~~~~~~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~ 240 (1047)
++||++.+++|++|.+|+.++..|+|+||||+|+|+++||++||+|.++++++++|++|+|++|+.||+..+..+.+.++
T Consensus 461 ~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k 540 (674)
T cd01384 461 AQKLYQTFKDHKRFEKPKLSRTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEETSKSSK 540 (674)
T ss_pred HHHHHHHhcCCCCCCCCCCCCCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccccccccccc
Confidence 99999999999999999988899999999999999999999999999999999999999999999999876555445567
Q ss_pred CCchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhHHHHHHhhCCCCccChHHHHHHHh
Q 001598 241 FSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFG 320 (1047)
Q Consensus 241 ~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~v~~QLr~~gvle~~~i~~~Gyp~r~~~~~F~~ry~ 320 (1047)
++||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||+++|||+|++|.+|+.||+
T Consensus 541 ~~tv~~~fk~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~ 620 (674)
T cd01384 541 FSSIGSRFKQQLQSLMETLSTTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFG 620 (674)
T ss_pred cccHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCccHHHHHHHHHhhcCCCCceeccceeeecccccccchhhhhhcc
Q 001598 321 ILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVL 374 (1047)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~il~~~~~~~~~iG~TkVFlr~~~~~~Le~~r~~~l 374 (1047)
+|++.......+.++.|+.||..++.++|++|+||||||+++++.||..|++++
T Consensus 621 ~L~~~~~~~~~~~~~~~~~il~~~~~~~~~~GktkVFlr~~~~~~LE~~R~~~~ 674 (674)
T cd01384 621 ILAPEVLKGSSDDKAACKKILDKMGLKGYQIGKTKVFLRAGQMAELDARRTEVL 674 (674)
T ss_pred HhCcccccCCCcHHHHHHHHHHhCCCCCEEecCeeEEEcCCHHHHHHHHHHhcC
Confidence 999987766678899999999999999999999999999999999999998753
No 6
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=4.8e-97 Score=826.11 Aligned_cols=434 Identities=39% Similarity=0.666 Sum_probs=399.3
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCC---C--CCCccccccccc
Q 001598 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD---P--NSKSLIGVLDIY 75 (1047)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~---~--~~~~~IgvLDi~ 75 (1047)
++.++.|+++||+|++.++||.+.+++|+.||.++||||||++|+|||+|||.+||++|... . .+...|||||||
T Consensus 304 ~v~~del~~aL~~Rtvaa~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiy 383 (1001)
T KOG0164|consen 304 SVTGDELERALTSRTVAAGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIY 383 (1001)
T ss_pred cCCHHHHHHHHHHHHHHhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEee
Confidence 46789999999999999999999999999999999999999999999999999999998532 1 235789999999
Q ss_pred CCccccCCchhhhhhhhchhHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCcccchhcchhhhcCCC-
Q 001598 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPR- 154 (1047)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~- 154 (1047)
|||+|+.||||||||||+||||||.|++-++|.|||||.+|||+|..|+|.+|.-++||+|.+..|||++|||||+.|+
T Consensus 384 gfeif~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~ 463 (1001)
T KOG0164|consen 384 GFEIFQDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGT 463 (1001)
T ss_pred eEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CChHHHHHHHHHHhcCCCCccCCC-------CCCCCcEEEeeccceEEeccchhhhcchhhHHHHHHHHhhcCCcccccc
Q 001598 155 STHETFAQKLYQTFKNHKRFSKPK-------LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSL 227 (1047)
Q Consensus 155 ~~d~~~~~kl~~~~~~~~~~~~~~-------~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~l 227 (1047)
-||.+|+++|.+.+++|++|..-+ .+...|.|.||||+|+|++.||++||+|.+..|+-.+|..|+++.+++|
T Consensus 464 vtD~tfL~~l~~~~~~H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~ 543 (1001)
T KOG0164|consen 464 VTDETFLEKLNQKLKKHPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSL 543 (1001)
T ss_pred cchHHHHHHHHHHhhhCCcchhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHh
Confidence 599999999999999999996432 2346899999999999999999999999999999999999999999999
Q ss_pred cccchhhccCC-CCCCchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhHHHHHHhhCC
Q 001598 228 FLPLAEESSKT-SKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGY 306 (1047)
Q Consensus 228 f~~~~~~~~~~-~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~v~~QLr~~gvle~~~i~~~Gy 306 (1047)
|+....+-+.. .+++|+|++|+.|+..||++|.+-+|+||||||||+.+.|+.||...|.+|.+|+|++|.+|++++||
T Consensus 544 fpeG~~~~~~~tkRP~Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgf 623 (1001)
T KOG0164|consen 544 FPEGNPDIAEVTKRPPTAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGF 623 (1001)
T ss_pred CCCCChhHHhhhcCCCcHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhccc
Confidence 99653322222 36789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccChHHHHHHHhhhhcccCCC--CccHHHHHHHHHhhcCCC-Cceeccceeeeccc-ccccchhhhhhcchhhHHHHH
Q 001598 307 PTRKPFDEFVDRFGILASKVLDG--SSDEVTACKRLLEKVGLE-GYQIGKTKVFLRAG-QMADLDARRTEVLGRSASIIQ 382 (1047)
Q Consensus 307 p~r~~~~~F~~ry~~l~~~~~~~--~~~~~~~~~~il~~~~~~-~~~iG~TkVFlr~~-~~~~Le~~r~~~l~~aa~~IQ 382 (1047)
.+|.+|+.|+.||+++++..|+. ..+.++.|..|++..+.. ++.+|+||||+|.. .+..||..|.+++...++.||
T Consensus 624 ahRq~Y~~FL~RYKmi~~~TWPn~~~g~dkd~v~vL~e~~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQ 703 (1001)
T KOG0164|consen 624 AHRQPYERFLLRYKMICESTWPNWRGGSDKDGVKVLLEHLGLAGDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQ 703 (1001)
T ss_pred ccccchHHHHHHHHhhCcccCCCCCCCCchhHHHHHHHHhccchhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987753 345799999999999874 89999999999974 568999999999999999999
Q ss_pred HHhhhcccchhhhhhhhhHHhhhhHhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHH
Q 001598 383 RKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKD 444 (1047)
Q Consensus 383 ~~~R~~~~R~~~~~~r~a~i~iQa~~Rg~laR~~~~~~r~~~aA~~IQ~~~R~~~~Rk~y~~ 444 (1047)
+.||||++|.+|++|+.+++.|+ |||.+..+ .++..||+.+|++..++.|.+
T Consensus 704 K~~RG~~~R~ry~rmka~~~ii~-wyR~~K~k---------s~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 704 KAWRGWLARQRYRRMKASATIIR-WYRRYKLK---------SYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---------HHHHHHHHHHHhhhhccccCC
Confidence 99999999999999999999999 88865432 467789999999999998864
No 7
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=3.9e-95 Score=880.07 Aligned_cols=369 Identities=51% Similarity=0.830 Sum_probs=348.3
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCC---CCCCcccccccccCC
Q 001598 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD---PNSKSLIGVLDIYGF 77 (1047)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~---~~~~~~IgvLDi~GF 77 (1047)
|||+++|.++||+|++.++||.++++++++||..+||+|||+||++||+|||.+||.+|++. .....+|||||||||
T Consensus 299 gv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GF 378 (691)
T cd01380 299 GVDASDLRKWLVKRQIVTRSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGF 378 (691)
T ss_pred CCCHHHHHHHHHhCEEEECCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcc
Confidence 79999999999999999999999999999999999999999999999999999999999876 456789999999999
Q ss_pred ccccCCchhhhhhhhchhHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCcccchhcchhhhcCCCCCh
Q 001598 78 ESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTH 157 (1047)
Q Consensus 78 E~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d 157 (1047)
|+|+.||||||||||||||||++|++|+|+.||++|.+|||+|++|+|.||++|||||+++ .|||++|||||++|++||
T Consensus 379 E~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~-~Gil~lLdee~~~p~~td 457 (691)
T cd01380 379 ETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESK-LGILSLLDEECRLPKGSD 457 (691)
T ss_pred cccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhCC-CchHHHhHHhhcCCCCCh
Confidence 9999999999999999999999999999999999999999999999999999999999985 799999999999999999
Q ss_pred HHHHHHHHHHhc--CCCCccCCCCCCCCcEEEeeccceEEeccchhhhcchhhHHHHHHHHhhcCCcccccccccchhhc
Q 001598 158 ETFAQKLYQTFK--NHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES 235 (1047)
Q Consensus 158 ~~~~~kl~~~~~--~~~~~~~~~~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~ 235 (1047)
++|++||++.++ +|+.|.+|+.+...|+|+||||+|+|+++||++||+|.++++++++|+.|+++||+.||+.....+
T Consensus 458 ~~f~~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~ 537 (691)
T cd01380 458 ESWAQKLYNKLPKKKNPHFEKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELAS 537 (691)
T ss_pred HHHHHHHHHHhcccCCCCccCCCCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccc
Confidence 999999999998 899999999888999999999999999999999999999999999999999999999997542110
Q ss_pred -----------------cCCCCCCchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhHH
Q 001598 236 -----------------SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEA 298 (1047)
Q Consensus 236 -----------------~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~v~~QLr~~gvle~ 298 (1047)
....+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||.+.|++||||+||+|+
T Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~ 617 (691)
T cd01380 538 SSSSSAKSKPAAKRPPKRAKQHKPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLET 617 (691)
T ss_pred cccccccccccccccccccccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHH
Confidence 012356899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCccChHHHHHHHhhhhcccCCCCccHHHHHHHHHhhcCC--CCceeccceeeecccccccchhhh
Q 001598 299 IRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARR 370 (1047)
Q Consensus 299 ~~i~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~--~~~~iG~TkVFlr~~~~~~Le~~r 370 (1047)
|||+++|||+|++|.+|+.||++|+|.......|+++.|+.||..+.. ++|++|+||||||+++++.||+.|
T Consensus 618 iri~r~Gyp~R~~~~~F~~ry~~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 618 IRISAAGFPSRWTYEEFAQRYRVLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HHHHhccCCccccHHHHHHHHHHhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 999999999999999999999999998764456899999999999875 589999999999999999999876
No 8
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=4.3e-95 Score=877.49 Aligned_cols=369 Identities=42% Similarity=0.713 Sum_probs=348.7
Q ss_pred CCCHHHHHHHHhhceEeecC----ceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCC-CCCCccccccccc
Q 001598 1 MCDAKALEDSLCKREIVTRD----ETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD-PNSKSLIGVLDIY 75 (1047)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~----e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~-~~~~~~IgvLDi~ 75 (1047)
|||+++|.++||+|++.+++ |.|++++++++|..+||+|||+||++||+|||.+||.+|.++ .....+|||||||
T Consensus 295 gv~~~~L~~~l~~~~~~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIf 374 (674)
T cd01378 295 GVDPSELEKALTSRTIETGGGGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIY 374 (674)
T ss_pred CCCHHHHHHHhcccEEEeCCCCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecc
Confidence 79999999999999999998 999999999999999999999999999999999999999875 5567899999999
Q ss_pred CCccccCCchhhhhhhhchhHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhc-CcccchhcchhhhcCC-
Q 001598 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEK-KPGGIIALLDEACMFP- 153 (1047)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~-~~~Gil~lLdee~~~~- 153 (1047)
|||+|+.||||||||||||||||++|++++|+.||++|.+|||+|+.|+|.||++|||||++ +|.|||++|||||++|
T Consensus 375 GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~ 454 (674)
T cd01378 375 GFEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPH 454 (674)
T ss_pred cccccccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCccCCCCCCCCcEEEeeccceEEeccchhhhcchhhHHHHHHHHhhcCCcccccccccchh
Q 001598 154 RSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAE 233 (1047)
Q Consensus 154 ~~~d~~~~~kl~~~~~~~~~~~~~~~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~ 233 (1047)
++||++|++||++.+++|+.+.+|+..+..|+|+||||+|+|+++||++||+|.++++++++|++|+|++|+.||+....
T Consensus 455 ~~tD~~~~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~ 534 (674)
T cd01378 455 EGTDQTFLEKLNKKFSSHPHSDHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSD 534 (674)
T ss_pred CCChHHHHHHHHHHhccCCCCCCCCCCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhccccc
Confidence 99999999999999999999888888889999999999999999999999999999999999999999999999986433
Q ss_pred hccCCCCCCchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhHHHHHHhhCCCCccChH
Q 001598 234 ESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFD 313 (1047)
Q Consensus 234 ~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~v~~QLr~~gvle~~~i~~~Gyp~r~~~~ 313 (1047)
.. ...+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.
T Consensus 535 ~~-~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~ 613 (674)
T cd01378 535 AD-SKKRPTTAGFKIKTSANALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFD 613 (674)
T ss_pred cc-ccCCCCcHHHHHHHHHHHHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHH
Confidence 22 22366899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcccCC-CCccHHHHHHHHHhhcCCC--Cceeccceeeeccc-ccccchhhh
Q 001598 314 EFVDRFGILASKVLD-GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAG-QMADLDARR 370 (1047)
Q Consensus 314 ~F~~ry~~l~~~~~~-~~~~~~~~~~~il~~~~~~--~~~iG~TkVFlr~~-~~~~Le~~r 370 (1047)
+|+.||++|+|..+. ...|+++.|+.||..++++ +|++|+||||||+| +++.||..|
T Consensus 614 ~F~~rY~~L~~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 614 KFLQRYKLLSPKTWPTWPGDAKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred HHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 999999999987532 3468899999999998764 89999999999997 688999866
No 9
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=5e-95 Score=874.98 Aligned_cols=370 Identities=44% Similarity=0.712 Sum_probs=347.9
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCC-CCCCcccccccccCCcc
Q 001598 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD-PNSKSLIGVLDIYGFES 79 (1047)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~-~~~~~~IgvLDi~GFE~ 79 (1047)
|||+++|.++||+|++.++||.|+++++++||..+||||||+||++||+|||.+||.+|+++ .....+||||||||||+
T Consensus 295 gv~~~~L~~~lt~~~~~~~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~ 374 (671)
T cd01381 295 GVPIQDLMDALTSRTIFTRGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFEN 374 (671)
T ss_pred CCCHHHHhhhhceEEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCccc
Confidence 79999999999999999999999999999999999999999999999999999999999754 45678999999999999
Q ss_pred ccCCchhhhhhhhchhHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCcccchhcchhhhcCCCCChHH
Q 001598 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1047)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~ 159 (1047)
|+.||||||||||||||||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++
T Consensus 375 f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~ 454 (671)
T cd01381 375 FDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQT 454 (671)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCccCCCC-CCCCcEEEeeccceEEeccchhhhcchhhHHHHHHHHhhcCCcccccccccchhhc-cC
Q 001598 160 FAQKLYQTFKNHKRFSKPKL-ARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES-SK 237 (1047)
Q Consensus 160 ~~~kl~~~~~~~~~~~~~~~-~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~-~~ 237 (1047)
|++||++.+++|+.|.+|+. ....|+|+||||+|+|+++||++||+|.++++++++|+.|+|++|+.||+.....+ ..
T Consensus 455 f~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~ 534 (671)
T cd01381 455 MLEKLHSQHGLHSNYLKPKSTQETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMGAET 534 (671)
T ss_pred HHHHHHHHhcCCCCcccCCCCCCCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccccccc
Confidence 99999999999999998875 45799999999999999999999999999999999999999999999998753211 22
Q ss_pred CCCCCchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhHHHHHHhhCCCCccChHHHHH
Q 001598 238 TSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVD 317 (1047)
Q Consensus 238 ~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~v~~QLr~~gvle~~~i~~~Gyp~r~~~~~F~~ 317 (1047)
..+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|++||++.|||+|++|.+|+.
T Consensus 535 ~~k~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ 614 (671)
T cd01381 535 RKKKPTLSSQFRRSLDLLMRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVE 614 (671)
T ss_pred cccCCcHHHHHHHHHHHHHHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccCCC--CccHHHHHHHHHhhcCC--CCceeccceeeecccccccchhhh
Q 001598 318 RFGILASKVLDG--SSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARR 370 (1047)
Q Consensus 318 ry~~l~~~~~~~--~~~~~~~~~~il~~~~~--~~~~iG~TkVFlr~~~~~~Le~~r 370 (1047)
||++|+|..... ..+.++.|+.|++.+.+ ++|++|+||||||++++..||+.|
T Consensus 615 rY~~L~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 615 RYRVLVPGVKPAYKQDCLAGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred HHHHhCcccccccccccHHHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 999999875532 34778999999998765 589999999999999999999876
No 10
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=5.8e-95 Score=878.81 Aligned_cols=370 Identities=44% Similarity=0.753 Sum_probs=347.5
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCcccccccccCCccc
Q 001598 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1047)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1047)
|||+++|.++||+|++.++++.|++++++++|..+||+|||+||++||+|||.+||.+|+++.....+||||||||||+|
T Consensus 308 gv~~~~L~~~l~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f 387 (693)
T cd01377 308 GVNSADLLKALLHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQQRAYFIGVLDIAGFEIF 387 (693)
T ss_pred CCCHHHHHHHhcceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEEeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999987778899999999999999
Q ss_pred cCCchhhhhhhhchhHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCcccchhcchhhhcCCCCChHH
Q 001598 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1047)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~ 159 (1047)
+.||||||||||||||||++|++++|+.||++|.+|||+|+.|+| .||++|||||+++|.|||++|||||++|++||++
T Consensus 388 ~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~ 467 (693)
T cd01377 388 DFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKT 467 (693)
T ss_pred CCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHH
Confidence 999999999999999999999999999999999999999999999 5999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCc--cCCCCCCCCcEEEeeccceEEeccchhhhcchhhHHHHHHHHhhcCCcccccccccchhhc--
Q 001598 160 FAQKLYQTFKNHKRF--SKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES-- 235 (1047)
Q Consensus 160 ~~~kl~~~~~~~~~~--~~~~~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~-- 235 (1047)
|++||++.+++|+.| .+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+......
T Consensus 468 ~~~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~ 547 (693)
T cd01377 468 FVEKLYDNHLGKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGD 547 (693)
T ss_pred HHHHHHHHhcCCCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcccccc
Confidence 999999999999887 4455567899999999999999999999999999999999999999999999997643211
Q ss_pred --------cCCCCCCchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhHHHHHHhhCCC
Q 001598 236 --------SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYP 307 (1047)
Q Consensus 236 --------~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~v~~QLr~~gvle~~~i~~~Gyp 307 (1047)
.+.++++||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||+++|||
T Consensus 548 ~~~~~~~~~~~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp 627 (693)
T cd01377 548 GGGGGGKKKKGGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFP 627 (693)
T ss_pred cccccCCCCcCCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCC
Confidence 112345899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccChHHHHHHHhhhhcccCC-CCccHHHHHHHHHhhcCCC--Cceeccceeeecccccccchhhh
Q 001598 308 TRKPFDEFVDRFGILASKVLD-GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1047)
Q Consensus 308 ~r~~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~il~~~~~~--~~~iG~TkVFlr~~~~~~Le~~r 370 (1047)
+|++|.+|+.||++|+|..+. ...|.++.|+.||..++++ +|++|+||||||++++..||.+|
T Consensus 628 ~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 628 NRILYAEFRQRYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred ccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 999999999999999998642 3468899999999998774 89999999999999999999876
No 11
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=1.4e-94 Score=872.03 Aligned_cols=369 Identities=38% Similarity=0.669 Sum_probs=343.6
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCcccccccccCCccc
Q 001598 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1047)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1047)
|||+++|.++||++++.+++|.|.+++++++|..+||+|||+||++||+|||.+||.+|.+. ....+||||||||||+|
T Consensus 296 gv~~~~L~~~lt~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~IgILDIfGFE~f 374 (677)
T cd01387 296 QISPEGLQKAITFKVTETRREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT-QDTLSIAILDIYGFEDL 374 (677)
T ss_pred CCCHHHHHHHhccCeEEeCCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceEEEEecCccccC
Confidence 79999999999999999999999999999999999999999999999999999999999874 45679999999999999
Q ss_pred cCCchhhhhhhhchhHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCcccchhcchhhhcCCCCChHHH
Q 001598 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1047)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~~ 160 (1047)
+.||||||||||||||||++|+++||+.||++|.+|||+|+.|+|.||++|||||+++|.|||+||||||++|++||++|
T Consensus 375 ~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~ 454 (677)
T cd01387 375 SFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTF 454 (677)
T ss_pred CCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCccCCCCCCCCcEEEeeccceEEeccchhhhcchhhHHHHHHHHhhcCCcccccccccchhhc-----
Q 001598 161 AQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES----- 235 (1047)
Q Consensus 161 ~~kl~~~~~~~~~~~~~~~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~----- 235 (1047)
++|++..+++|+.|.+|+.+.+.|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+......
T Consensus 455 ~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~ 534 (677)
T cd01387 455 LQKCHYHHGANPLYSKPKMPLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRL 534 (677)
T ss_pred HHHHHHhccCCccccCCCCCCCeeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccc
Confidence 999999999999999999888899999999999999999999999999999999999999999999997532110
Q ss_pred ------cCCCCCCchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhHHHHHHhhCCCCc
Q 001598 236 ------SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTR 309 (1047)
Q Consensus 236 ------~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~v~~QLr~~gvle~~~i~~~Gyp~r 309 (1047)
++..+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||..+|++||||+||+|+|||+++|||+|
T Consensus 535 ~~~s~~~~~~~~~tv~~~f~~sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r 614 (677)
T cd01387 535 GKSSSGTRLYKAHTVAAKFQQSLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVR 614 (677)
T ss_pred cCCCccccccCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCcc
Confidence 01124679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHhhhhcccCCCCccHHHHHHHHHhhcCC--CCceeccceeeecccccccchhhh
Q 001598 310 KPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARR 370 (1047)
Q Consensus 310 ~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~--~~~~iG~TkVFlr~~~~~~Le~~r 370 (1047)
++|.+|+.||++|+|.......+.+..+..++..+++ ++|++|+||||||++++..||..|
T Consensus 615 ~~~~~F~~rY~~L~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 615 LPFQHFIDRYRCLVALKLARPAPGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred ccHHHHHHHHHHhCcccccCCCcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 9999999999999997554333345556788888765 479999999999999999999876
No 12
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=2e-94 Score=869.00 Aligned_cols=366 Identities=46% Similarity=0.795 Sum_probs=341.2
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCC-CCCcccccccccCCcc
Q 001598 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDP-NSKSLIGVLDIYGFES 79 (1047)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~-~~~~~IgvLDi~GFE~ 79 (1047)
|||+++|.++||++++.++|+.++++++++||..+||+|||+||++||+|||.+||.+|++.. ....+||||||||||+
T Consensus 298 gv~~~~L~~~l~~~~~~~~~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~ 377 (677)
T cd01383 298 GCNIEDLMLALSTRKMHVNNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFES 377 (677)
T ss_pred CCCHHHHHHHhhhcEEEeCCceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeecccccc
Confidence 799999999999999999999999999999999999999999999999999999999998653 3467999999999999
Q ss_pred ccCCchhhhhhhhchhHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCcccchhcchhhhcCCCCChHH
Q 001598 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1047)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~ 159 (1047)
|+.||||||||||||||||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||++
T Consensus 378 f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~ 457 (677)
T cd01383 378 FDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLT 457 (677)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCccCCCCCCCCcEEEeeccceEEeccchhhhcchhhHHHHHHHHhhcCCcccccccccch-----h-
Q 001598 160 FAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLA-----E- 233 (1047)
Q Consensus 160 ~~~kl~~~~~~~~~~~~~~~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~-----~- 233 (1047)
|++||++++++|+.|.+++ ...|+|+||||+|+|+++||++||+|.++++++++|++|+++++. +|.... .
T Consensus 458 f~~kl~~~~~~~~~~~~~~--~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~-~f~~~~~~~s~~~ 534 (677)
T cd01383 458 FANKLKQHLKTNSCFRGER--GGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQ-LFASSMLIQSPVV 534 (677)
T ss_pred HHHHHHHHhCCCCCCCCCC--CCceEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHH-HHHhhhhcccccc
Confidence 9999999999999998775 468999999999999999999999999999999999999999876 554320 0
Q ss_pred h-----ccCCCCCCchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhHHHHHHhhCCCC
Q 001598 234 E-----SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPT 308 (1047)
Q Consensus 234 ~-----~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~v~~QLr~~gvle~~~i~~~Gyp~ 308 (1047)
. .....+..||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||+++|||+
T Consensus 535 ~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~ 614 (677)
T cd01383 535 GPLYVASAADSQKLSVGTKFKGQLFKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPT 614 (677)
T ss_pred ccccccccccccCcchHHHHHHHHHHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCc
Confidence 0 01123578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHhhhhcccCCCCccHHHHHHHHHhhcCCC--Cceeccceeeecccccccchhhh
Q 001598 309 RKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1047)
Q Consensus 309 r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iG~TkVFlr~~~~~~Le~~r 370 (1047)
|++|.+|+.||++|++..+. ..|++..|+.||..++++ +|++|+||||||.++++.||..|
T Consensus 615 R~~~~~F~~rY~~L~~~~~~-~~~~~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 615 RMTHQEFARRYGFLLLENIA-SQDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred cccHHHHHHHHHHhCccccC-CCCHHHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 99999999999999997654 357889999999988764 89999999999999999999876
No 13
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=1.1e-93 Score=865.93 Aligned_cols=367 Identities=40% Similarity=0.650 Sum_probs=344.2
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCC---CCCcccccccccCC
Q 001598 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDP---NSKSLIGVLDIYGF 77 (1047)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~---~~~~~IgvLDi~GF 77 (1047)
|||+++|.++||++++.++||.|+++++++||..+||+|||+||++||+|||++||.+|++.. ....+|||||||||
T Consensus 307 gv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GF 386 (692)
T cd01385 307 KVKRETLMEALTKKRTVTVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGF 386 (692)
T ss_pred CCCHHHHHHHhccCeEEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCcc
Confidence 799999999999999999999999999999999999999999999999999999999998643 34689999999999
Q ss_pred ccccC-CchhhhhhhhchhHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCcccchhcchhhhcCCCCC
Q 001598 78 ESFKT-NSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRST 156 (1047)
Q Consensus 78 E~f~~-NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~~ 156 (1047)
|+|+. ||||||||||||||||++|++++|+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|++|
T Consensus 387 E~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~t 466 (692)
T cd01385 387 EDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHAT 466 (692)
T ss_pred ccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCC
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCccCCCCCCCCcEEEeeccceEEeccchhhhcchhhHHHHHHHHhhcCCcccccccccchhhcc
Q 001598 157 HETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESS 236 (1047)
Q Consensus 157 d~~~~~kl~~~~~~~~~~~~~~~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~ 236 (1047)
|++|++|+++.+++|+.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+|++|+.||+..+....
T Consensus 467 d~~~l~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~ 546 (692)
T cd01385 467 SQTLLAKFNQQHKDNKYYEGPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVF 546 (692)
T ss_pred HHHHHHHHHHHhCCCCCccCCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCccccc
Confidence 99999999999999999999988788999999999999999999999999999999999999999999999976432211
Q ss_pred ---------CCCCCCchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhHHHHHHhhCCC
Q 001598 237 ---------KTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYP 307 (1047)
Q Consensus 237 ---------~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~v~~QLr~~gvle~~~i~~~Gyp 307 (1047)
++.+.+||+++|+.||++||++|++|+||||||||||+.++|+.||...|++||||+||+|++||++.|||
T Consensus 547 ~~~~~~~~~~~~~~~tV~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp 626 (692)
T cd01385 547 RWAVLRAAFRAMAAPSVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYS 626 (692)
T ss_pred ccccccccccCccCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCC
Confidence 11234799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccChHHHHHHHhhhhcccCCCCccHHHHHHHHHhhcCCC--Cceeccceeeecccccccchhhh
Q 001598 308 TRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1047)
Q Consensus 308 ~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iG~TkVFlr~~~~~~Le~~r 370 (1047)
+|++|.+|+.||++|+|.... ..++.|+.||+.++++ +|++|+||||||+++++.||..-
T Consensus 627 ~R~~~~~F~~rY~~L~~~~~~---~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~ 688 (692)
T cd01385 627 VRYTYQDFTQQYRILLPKGAQ---SCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETL 688 (692)
T ss_pred ccccHHHHHHHHHHhCccccc---chHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHH
Confidence 999999999999999987432 3467799999998775 89999999999999999998743
No 14
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=1.2e-93 Score=868.68 Aligned_cols=367 Identities=40% Similarity=0.656 Sum_probs=342.8
Q ss_pred CCCHHHHHHHHhhceEe-----ecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCccccccccc
Q 001598 1 MCDAKALEDSLCKREIV-----TRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIY 75 (1047)
Q Consensus 1 ~~d~~~l~~~l~~r~~~-----~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDi~ 75 (1047)
|||+++|.++||+|++. ++|+.|+++++++||..+||+|||+||++||+|||.+||.+|..+ .+..+|||||||
T Consensus 327 gv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~-~~~~~IgiLDIf 405 (717)
T cd01382 327 GLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFE-TSSNFIGVLDIA 405 (717)
T ss_pred CCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCcEEEEEecc
Confidence 79999999999999998 789999999999999999999999999999999999999999765 356789999999
Q ss_pred CCccccCCchhhhhhhhchhHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCcccchhcchhhhcCCCC
Q 001598 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRS 155 (1047)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~ 155 (1047)
|||+|+.||||||||||||||||++|++++|+.||++|.+|||+|++|+|.||++|||||++||.|||++|||||++|++
T Consensus 406 GFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~~~p~~ 485 (717)
T cd01382 406 GFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEENRLPQP 485 (717)
T ss_pred ccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCccCCCCC----------CCCcEEEeeccceEEeccchhhhcchhhHHHHHHHHhhcCCcccc
Q 001598 156 THETFAQKLYQTFKNHKRFSKPKLA----------RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVS 225 (1047)
Q Consensus 156 ~d~~~~~kl~~~~~~~~~~~~~~~~----------~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~ 225 (1047)
||++|++||++.+++|++|..|+.+ ...|+|+||||+|+|+++||++||+|.++++++++|++|+|+||+
T Consensus 486 tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~ll~~S~n~~i~ 565 (717)
T cd01382 486 SDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESKDKFLR 565 (717)
T ss_pred CHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHHHHhCchHHHH
Confidence 9999999999999999888777532 357999999999999999999999999999999999999999999
Q ss_pred cccccchhhc---c--CCCCCCchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhHHHH
Q 001598 226 SLFLPLAEES---S--KTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIR 300 (1047)
Q Consensus 226 ~lf~~~~~~~---~--~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~v~~QLr~~gvle~~~ 300 (1047)
.||+...... . ...++.||+++|+.||+.||++|++|+||||||||||+.++|+.||..+|++||||+||||+||
T Consensus 566 ~lf~~~~~~~~~~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~vr 645 (717)
T cd01382 566 SLFESSTNNNDTKQKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQLQCSGMVSVLD 645 (717)
T ss_pred HHhccccccccccccccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHHHHhcchHHHHH
Confidence 9998643211 1 1225679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCccChHHHHHHHhhhhcccCCCCccHHHHHHHHHhhcCCC--Cceeccceeeecccccccchhh
Q 001598 301 ISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDAR 369 (1047)
Q Consensus 301 i~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iG~TkVFlr~~~~~~Le~~ 369 (1047)
|+++|||+|++|.+|+.||+.|+|.... ..|+++.|+.||..++++ +|++|+||||||+|+++.||++
T Consensus 646 i~r~Gyp~R~~f~~F~~ry~~l~~~~~~-~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~~ 715 (717)
T cd01382 646 LMQGGFPSRASFHELYNMYKKYMPPKLV-RLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQI 715 (717)
T ss_pred HHHccCchhhhHHHHHHHHHHhCCcccC-CCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHHH
Confidence 9999999999999999999999986553 358899999999998764 8999999999999999999874
No 15
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=6.5e-93 Score=852.77 Aligned_cols=347 Identities=40% Similarity=0.707 Sum_probs=331.6
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCC-----CCccccccccc
Q 001598 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPN-----SKSLIGVLDIY 75 (1047)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~-----~~~~IgvLDi~ 75 (1047)
|||+++|.++||++++.++|+.|++++++++|..+||+|||+||++||+|||.+||.+|+++.. ...+|||||||
T Consensus 302 gv~~~~L~~~L~~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~ 381 (653)
T cd01379 302 CIRSDELQEALTSHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIF 381 (653)
T ss_pred CCCHHHHHHHhcccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEecc
Confidence 7999999999999999999999999999999999999999999999999999999999986532 35789999999
Q ss_pred CCccccCCchhhhhhhhchhHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCcccchhcchhhhcCCCC
Q 001598 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRS 155 (1047)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~ 155 (1047)
|||+|+.||||||||||||||||++|++++|+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|+|
T Consensus 382 GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~ 461 (653)
T cd01379 382 GFENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQA 461 (653)
T ss_pred ccccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCccCCCCCCCCcEEEeeccceEEeccchhhhcchhhHHHHHHHHhhcCCcccccccccchhhc
Q 001598 156 THETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES 235 (1047)
Q Consensus 156 ~d~~~~~kl~~~~~~~~~~~~~~~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~ 235 (1047)
||++|++|++.+++ ++.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|
T Consensus 462 td~~~~~kl~~~~~-~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S---------------- 524 (653)
T cd01379 462 TDQTLVEKFEDNLK-SKFFWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS---------------- 524 (653)
T ss_pred CHHHHHHHHHHhcC-CCCccCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC----------------
Confidence 99999999999886 4678889888889999999999999999999999999999999999987
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhHHHHHHhhCCCCccChHHH
Q 001598 236 SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEF 315 (1047)
Q Consensus 236 ~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~v~~QLr~~gvle~~~i~~~Gyp~r~~~~~F 315 (1047)
+||+++|+.||++||++|++|+||||||||||+.+.|+.||...|++||||+||+|+|||+++|||+|++|.+|
T Consensus 525 ------~tv~~~fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F 598 (653)
T cd01379 525 ------QTVASYFRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANF 598 (653)
T ss_pred ------cHHHHHHHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccCCCCccHHHHHHHHHhhcCCCCceeccceeeecccccccchhhh
Q 001598 316 VDRFGILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARR 370 (1047)
Q Consensus 316 ~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~~~~iG~TkVFlr~~~~~~Le~~r 370 (1047)
+.||++|++.......+.++.|+.||..++.++|++|+||||||++++..||.+|
T Consensus 599 ~~rY~~l~~~~~~~~~~~~~~~~~il~~~~~~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 599 IRRYCFLAYRFEEEPVSSPESCALILEKAKLDNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred HHHHHHhccccccccCChHHHHHHHHHhCCCCCEEecceEEEEecCHHHHHHhcC
Confidence 9999999987544445789999999999999999999999999999999999865
No 16
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=1.8e-92 Score=859.51 Aligned_cols=371 Identities=53% Similarity=0.889 Sum_probs=351.9
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCcccccccccCCccc
Q 001598 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1047)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1047)
||++++|.++|+++++.++||.+++++++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|
T Consensus 303 gv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDifGFE~f 382 (677)
T smart00242 303 GVDPEELEKALTKRKIKTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKDGSTYFIGVLDIYGFEIF 382 (677)
T ss_pred CCCHHHHHHHhcccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999987678899999999999999
Q ss_pred cCCchhhhhhhhchhHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCcccchhcchhhhcCCCCChHHH
Q 001598 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1047)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~~ 160 (1047)
+.||||||||||||||||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||++|
T Consensus 383 ~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~ 462 (677)
T smart00242 383 EVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTF 462 (677)
T ss_pred ccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCccCCC-CCCCCcEEEeeccceEEeccchhhhcchhhHHHHHHHHhhcCCcccccccccchhhccCCC
Q 001598 161 AQKLYQTFKNHKRFSKPK-LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTS 239 (1047)
Q Consensus 161 ~~kl~~~~~~~~~~~~~~-~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~ 239 (1047)
++||++.+++|+.|.+|+ .....|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+.......+..
T Consensus 463 ~~kl~~~~~~~~~~~~~~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~ 542 (677)
T smart00242 463 LEKLNQTHEKHPHFSKPRKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNAGSKK 542 (677)
T ss_pred HHHHHHHhcCCCCccCCCCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccccccccC
Confidence 999999999999999984 4567999999999999999999999999999999999999999999999987544333344
Q ss_pred CCCchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhHHHHHHhhCCCCccChHHHHHHH
Q 001598 240 KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRF 319 (1047)
Q Consensus 240 ~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~v~~QLr~~gvle~~~i~~~Gyp~r~~~~~F~~ry 319 (1047)
+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|++||++.|||+|++|.+|+.||
T Consensus 543 ~~~tv~~~fk~~L~~L~~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry 622 (677)
T smart00242 543 RFRTVGSQFKESLNKLMDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRY 622 (677)
T ss_pred CCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCC-CccHHHHHHHHHhhcCC--CCceeccceeeecccccccchhhhh
Q 001598 320 GILASKVLDG-SSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARRT 371 (1047)
Q Consensus 320 ~~l~~~~~~~-~~~~~~~~~~il~~~~~--~~~~iG~TkVFlr~~~~~~Le~~r~ 371 (1047)
++|++..+.. ..|+++.|+.||..+++ ++|++|+||||||++++..||+.|+
T Consensus 623 ~~L~~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 623 RVLLPDTWPPWGGDAKEACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred HHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 9999875432 34689999999999865 5899999999999999999998874
No 17
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=8.8e-92 Score=783.39 Aligned_cols=400 Identities=38% Similarity=0.665 Sum_probs=370.7
Q ss_pred CCCHHHHHHHHhhceEee----cCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCC-CCCccccccccc
Q 001598 1 MCDAKALEDSLCKREIVT----RDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDP-NSKSLIGVLDIY 75 (1047)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~----~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~-~~~~~IgvLDi~ 75 (1047)
|||+..|++.||.|.+.+ +.+.|.++|+++||.+.||||||+||.+||||||++||.+|...+ ....+|||||||
T Consensus 312 gi~s~~l~~~Lt~R~M~s~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIY 391 (1106)
T KOG0162|consen 312 GIDSARLEEKLTSRIMESKWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIY 391 (1106)
T ss_pred cCCHHHHHHHHHHHHHhhcccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEee
Confidence 799999999999999986 368999999999999999999999999999999999999997433 357899999999
Q ss_pred CCccccCCchhhhhhhhchhHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcC-cccchhcchhhhcCC-
Q 001598 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKK-PGGIIALLDEACMFP- 153 (1047)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~-~~Gil~lLdee~~~~- 153 (1047)
|||+|++||||||||||.||||||.|++-+++.|||||.+|||.|++|.|.||.-++||||.| |.||+++|||.|.-.
T Consensus 392 GFEIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~H 471 (1106)
T KOG0162|consen 392 GFEIFENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAH 471 (1106)
T ss_pred eeeecccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999974 779999999999743
Q ss_pred ---CCChHHHHHHHHHHhcCCCCccCCCCCCCCcEEEeeccceEEeccchhhhcchhhHHHHHHHHhhcCCccccccccc
Q 001598 154 ---RSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLP 230 (1047)
Q Consensus 154 ---~~~d~~~~~kl~~~~~~~~~~~~~~~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~ 230 (1047)
.+.|++|+++|...+++||+|..- ...|+|+||||+|+||++||.+||+|.+..|+++|++.|+++|++.||+.
T Consensus 472 a~~~~aDqa~~qrLn~~~~s~phF~~~---s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe 548 (1106)
T KOG0162|consen 472 ADSEGADQALLQRLNKLFGSHPHFESR---SNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPE 548 (1106)
T ss_pred cccchhHHHHHHHHHHHhcCCCccccc---cCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCch
Confidence 467999999999999999999742 47899999999999999999999999999999999999999999999997
Q ss_pred chhhccCCCCCCchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhHHHHHHhhCCCCcc
Q 001598 231 LAEESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRK 310 (1047)
Q Consensus 231 ~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~v~~QLr~~gvle~~~i~~~Gyp~r~ 310 (1047)
..+. .+..+++|.|++.+.|.++|++||..|.||||||||||+.|.|+.||...|++|+.|+|+-|-|||+++||.+|.
T Consensus 549 ~v~~-dskrRP~Tag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr 627 (1106)
T KOG0162|consen 549 NVDA-DSKRRPPTAGDKIKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRR 627 (1106)
T ss_pred hhcc-cccCCCCCchhhHHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHH
Confidence 6433 344578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhhhcccCC-CCccHHHHHHHHHhhcCC--CCceeccceeeecc-cccccchhhhhhcchhhHHHHHHHhh
Q 001598 311 PFDEFVDRFGILASKVLD-GSSDEVTACKRLLEKVGL--EGYQIGKTKVFLRA-GQMADLDARRTEVLGRSASIIQRKVR 386 (1047)
Q Consensus 311 ~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~il~~~~~--~~~~iG~TkVFlr~-~~~~~Le~~r~~~l~~aa~~IQ~~~R 386 (1047)
.|+.|+.||.+|.|..+. +..|++++|+.||....+ ++||+|.||||++. ..+..||.+|+......|.+||++||
T Consensus 628 ~F~kF~qRyailsp~t~~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWR 707 (1106)
T KOG0162|consen 628 AFDKFAQRYAILSPQTWPTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWR 707 (1106)
T ss_pred HHHHHHHHheecCcccccccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999998764 457999999999998765 58999999999997 56789999999999999999999999
Q ss_pred hcccchhhhhhhhhHHhh
Q 001598 387 SYLSRKNYIMLRRSAIHI 404 (1047)
Q Consensus 387 ~~~~R~~~~~~r~a~i~i 404 (1047)
.|++|++|.++|.-+..+
T Consensus 708 rfv~rrky~k~ree~t~l 725 (1106)
T KOG0162|consen 708 RFVARRKYEKMREEATKL 725 (1106)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998765543
No 18
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=1.3e-90 Score=846.13 Aligned_cols=370 Identities=49% Similarity=0.818 Sum_probs=344.4
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCcccccccccCCccc
Q 001598 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1047)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1047)
|||+++|.++||++++.++|+.+++++++++|..+||+|||+||++||+|||.+||.+|+++.....+||||||||||+|
T Consensus 296 gv~~~~L~~~l~~~~~~~~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 375 (679)
T cd00124 296 GLDPEELEEALTYKVTKVGGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKDGRSLFIGILDIFGFEIF 375 (679)
T ss_pred CCCHHHHHHHhhccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeeEEeccccccC
Confidence 79999999999999999999999999999999999999999999999999999999999887677899999999999999
Q ss_pred cCCchhhhhhhhchhHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCcccchhcchhhhcCCCCChHHH
Q 001598 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1047)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~~ 160 (1047)
+.||||||||||||||||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||++|
T Consensus 376 ~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~ 455 (679)
T cd00124 376 EKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETF 455 (679)
T ss_pred CCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCccC-CCCCCCCcEEEeeccceEEeccchhhhcchhhHHHHHHHHhhcCCcccccccccchhh-----
Q 001598 161 AQKLYQTFKNHKRFSK-PKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEE----- 234 (1047)
Q Consensus 161 ~~kl~~~~~~~~~~~~-~~~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~----- 234 (1047)
++||++.+++|+.|.. ++.....|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+.....
T Consensus 456 ~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~ 535 (679)
T cd00124 456 LEKLNNKLKSNNAFYPAKKNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSS 535 (679)
T ss_pred HHHHHHHhcCCcccccCCCCCCCceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccc
Confidence 9999999999988643 4456689999999999999999999999999999999999999999999999764211
Q ss_pred ------ccCCCCCCchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhHHHHHHhhCCCC
Q 001598 235 ------SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPT 308 (1047)
Q Consensus 235 ------~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~v~~QLr~~gvle~~~i~~~Gyp~ 308 (1047)
..+..+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|++||++.|||+
T Consensus 536 ~~~~~~~~~~~~~~tv~~~f~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~ 615 (679)
T cd00124 536 TGSTSSKGKKKKGQTVGSQFRTSLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSV 615 (679)
T ss_pred cccccccccccCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCc
Confidence 11223678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHhhhhcccCCCCccHHHHHHHHHhhcCCC--Cceeccceeeecccccccchhhh
Q 001598 309 RKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1047)
Q Consensus 309 r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iG~TkVFlr~~~~~~Le~~r 370 (1047)
|++|.+|+.||++|++..........+.|+.++..++++ +|++|+||||||++++..||..|
T Consensus 616 R~~~~eF~~rY~~L~~~~~~~~~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 616 RIPFDEFLSRYRFLAPDLLEKVSLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred eeeHHHHHHHHHHhCcccccccCCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 999999999999999876544333344499999988764 89999999999999999999865
No 19
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=4.5e-89 Score=829.41 Aligned_cols=370 Identities=29% Similarity=0.455 Sum_probs=329.5
Q ss_pred CCCHHHHHHHHhhceEeecCc-------------eEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCc
Q 001598 1 MCDAKALEDSLCKREIVTRDE-------------TITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKS 67 (1047)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e-------------~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~ 67 (1047)
|||+++|.++|+++++.++++ .++.++++.+|..+||||||+||++||+|||.+||.+|.++.....
T Consensus 294 gv~~~~L~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~ 373 (767)
T cd01386 294 GCPLEELSSATFKHTLRGGINQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSHHSIA 373 (767)
T ss_pred CCCHHHHHHHhcccEEeecceeeeccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 799999999999988766543 3445788999999999999999999999999999999988766678
Q ss_pred ccccccccCCccccC------CchhhhhhhhchhHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCc-
Q 001598 68 LIGVLDIYGFESFKT------NSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKP- 139 (1047)
Q Consensus 68 ~IgvLDi~GFE~f~~------NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~ldli~~~~- 139 (1047)
+||||||||||+|+. |||||||||||||||||+|+++||+.||+||.+|||+|+++.+ .||++|||||+++|
T Consensus 374 ~IgiLDIfGFE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~ 453 (767)
T cd01386 374 SIMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQ 453 (767)
T ss_pred EEEEEecccccccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccc
Confidence 999999999999984 8999999999999999999999999999999999999987655 79999999999865
Q ss_pred -------------ccchhcchhhhcCCCCChHHHHHHHHHHhcCCCCccCCC------CCCCCcEEEeeccc--eEEecc
Q 001598 140 -------------GGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPK------LARSDFTICHYAGD--VTYQTE 198 (1047)
Q Consensus 140 -------------~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~------~~~~~F~i~Hyag~--V~Y~~~ 198 (1047)
.|||++|||||++|++||++|++||++.+++|+.|.++. .....|+|+||||+ |+|++.
T Consensus 454 ~~~~~~~~~~~~~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~ 533 (767)
T cd01386 454 QVVVPAGLRAEDARGLLWLLDEEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVT 533 (767)
T ss_pred cccccchhhccCCCchhhhhhHhhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCC
Confidence 599999999999999999999999999999888887622 12468999999995 999999
Q ss_pred chhhhcchhh-HHHHHHHHhhcCCcccccccccchh-------------hcc----------C--------CCCCCchHH
Q 001598 199 LFLDKNKDYV-VAEHQALLSASKCSFVSSLFLPLAE-------------ESS----------K--------TSKFSSIGS 246 (1047)
Q Consensus 199 ~fl~kN~d~~-~~~~~~ll~~S~~~~i~~lf~~~~~-------------~~~----------~--------~~~~~tv~~ 246 (1047)
||++||+|.+ +.+++++|++|++++|..||..... ..+ + ..+..||++
T Consensus 534 gfleKNkD~~~~~~~~~ll~~S~~~~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~ 613 (767)
T cd01386 534 GWLRRAKPNPAALNAPQLLQDSKREEINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCV 613 (767)
T ss_pred CHHHhcCCCCChHHHHHHHHhCCcHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHH
Confidence 9999999965 6899999999999999999954210 000 0 013458999
Q ss_pred HHHHHHHHHHHHhccCCCeeeeecCCCCCCC----------------------CCcccccchhhhhhccchhHHHHHHhh
Q 001598 247 RFKQQLQQLLETLSSSEPHYIRCVKPNNLLK----------------------PAIFENKNVLQQLRCGGVMEAIRISCA 304 (1047)
Q Consensus 247 ~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~----------------------~~~fd~~~v~~QLr~~gvle~~~i~~~ 304 (1047)
+|+.||+.||++|++|+||||||||||+.+. |+.||.++|++||||+||+|+|||+++
T Consensus 614 qFk~qL~~Lm~~L~~t~phfIRCIKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~ 693 (767)
T cd01386 614 QVKLQVDALIDTLRRSGLHFVHCYLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRL 693 (767)
T ss_pred HHHHHHHHHHHHHhccCCeeEEEeCccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhc
Confidence 9999999999999999999999999999874 789999999999999999999999999
Q ss_pred CCCCccChHHHHHHHhhhhcccCC------CCccHHHHHHHHHhhcCCC--Cceeccceeeecccccccchhhh
Q 001598 305 GYPTRKPFDEFVDRFGILASKVLD------GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1047)
Q Consensus 305 Gyp~r~~~~~F~~ry~~l~~~~~~------~~~~~~~~~~~il~~~~~~--~~~iG~TkVFlr~~~~~~Le~~r 370 (1047)
|||+|++|.+|+.||++|++..++ ...|++++|+.||..++++ +|++|+||||||+++++.||..|
T Consensus 694 Gfp~R~~~~~F~~RY~~L~~~~~~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 694 GFPISVPLGEFVRRFGLLAEGLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred CCcccccHHHHHHHHHhhChhhcccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 999999999999999999886432 2358899999999998764 89999999999999999999876
No 20
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=5.6e-86 Score=737.11 Aligned_cols=437 Identities=38% Similarity=0.622 Sum_probs=383.4
Q ss_pred CCCHHHHHHHHhhceEee-----cCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCccccccccc
Q 001598 1 MCDAKALEDSLCKREIVT-----RDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIY 75 (1047)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~-----~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDi~ 75 (1047)
|+|+.+|.-.||.|++.+ +|-.|.+||.+.+|..+||||||++|++||||||.+||+++-.. .+..|||||||.
T Consensus 381 Gld~~elr~~L~aRvMqtt~GG~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe-~St~fiGVLDiA 459 (1259)
T KOG0163|consen 381 GLDQTELRTGLCARVMQTTKGGFKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPFE-KSTFFIGVLDIA 459 (1259)
T ss_pred CCCHHHHHHHHHHHHHHhccCCccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhcccccc-cccceeEEEeec
Confidence 789999999999999875 35588999999999999999999999999999999999999543 578999999999
Q ss_pred CCccccCCchhhhhhhhchhHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCcccchhcchhhhcCCCC
Q 001598 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRS 155 (1047)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~ 155 (1047)
|||-|.+||||||||||+|||||++||+.+++.|||.|.+||++...|+|.||++||+|||.|..|||.|||||..+|+.
T Consensus 460 GFEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~ 539 (1259)
T KOG0163|consen 460 GFEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKP 539 (1259)
T ss_pred cceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCccCCCCC----------CCCcEEEeeccceEEeccchhhhcchhhHHHHHHHHhhcCCcccc
Q 001598 156 THETFAQKLYQTFKNHKRFSKPKLA----------RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVS 225 (1047)
Q Consensus 156 ~d~~~~~kl~~~~~~~~~~~~~~~~----------~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~ 225 (1047)
+++.|....++.+++|=++.-|+.+ ...|.|+||||.|.|++..|++||.|.+...+..|+..|+++|+.
T Consensus 540 s~qhFT~~vHe~~k~HfRL~~PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~ 619 (1259)
T KOG0163|consen 540 SYQHFTARVHESNKNHFRLDLPRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLV 619 (1259)
T ss_pred chHHHHHHHHHhhhcceeecCCchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccchHHH
Confidence 9999999999999988777667542 358999999999999999999999999999999999999999999
Q ss_pred cccccchhhccCC----CCCCchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhHHHHH
Q 001598 226 SLFLPLAEESSKT----SKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRI 301 (1047)
Q Consensus 226 ~lf~~~~~~~~~~----~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~v~~QLr~~gvle~~~i 301 (1047)
.||++....+.+. -++-|||++|+.||..||+.|.+|..|||||||||....|+.||...++.||+|+|+...+++
T Consensus 620 sLF~S~s~t~a~~~~gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~L 699 (1259)
T KOG0163|consen 620 SLFPSGSSTSAKQTRGKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLEL 699 (1259)
T ss_pred HHccCCCCCccccccceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHH
Confidence 9999853222211 256799999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCccChHHHHHHHhhhhcccCCCCccHHHHHHHHHhhcCCC--CceeccceeeecccccccchhhhhhcchhhHH
Q 001598 302 SCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSAS 379 (1047)
Q Consensus 302 ~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iG~TkVFlr~~~~~~Le~~r~~~l~~aa~ 379 (1047)
+..|||+|.+|.+.+.=|.-.+|..+. ..|++-.|+.+...++++ +|++|.|||||++|-++.++++-..--.....
T Consensus 700 Mq~GyPSR~~F~dLYamYkk~lPpkLa-rLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~ 778 (1259)
T KOG0163|consen 700 MQHGYPSRTSFADLYAMYKKVLPPKLA-RLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLE 778 (1259)
T ss_pred HhcCCCccccHHHHHHHHHhhCCHhhh-cCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHH
Confidence 999999999999999999988876553 468999999999999986 89999999999999999999876655555555
Q ss_pred HHHHHhhhcccchhhhhhhhhHHhhhhHhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001598 380 IIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFS 448 (1047)
Q Consensus 380 ~IQ~~~R~~~~R~~~~~~r~a~i~iQa~~Rg~laR~~~~~~r~~~aA~~IQ~~~R~~~~Rk~y~~~r~a 448 (1047)
.|++ +..|+.+.++++...++..+-..--.. .-|..+++++|+++|||++|+++......
T Consensus 779 lv~k-Vn~WLv~sRWkk~q~~a~sVIKLkNkI--------~yRae~v~k~Q~~~Rg~L~rkr~~~ri~~ 838 (1259)
T KOG0163|consen 779 LVAK-VNKWLVRSRWKKSQYGALSVIKLKNKI--------IYRAECVLKAQRIARGYLARKRHRPRIAG 838 (1259)
T ss_pred HHHH-HHHHHHHhHHHHhhhhhhheeehhhHH--------HHHHHHHHHHHHHHHHHHHHhhhchHHHH
Confidence 5554 567788877766654433221110000 11335788899999999999988765443
No 21
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=1.6e-85 Score=812.13 Aligned_cols=359 Identities=51% Similarity=0.866 Sum_probs=318.5
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCC-CCCcccccccccCCcc
Q 001598 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDP-NSKSLIGVLDIYGFES 79 (1047)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~-~~~~~IgvLDi~GFE~ 79 (1047)
|||+++|.++||+|++.+++|.+++++++++|..+||+|||+||++||+|||++||.+|++.. ....+||||||||||+
T Consensus 297 gv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~ 376 (689)
T PF00063_consen 297 GVDSEELEKALTTRTIKVGGETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFEN 376 (689)
T ss_dssp TS-HHHHHHHHHSEEEESTTSEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B--
T ss_pred CCCHHHHHHHHhhccccccccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCcccccc
Confidence 799999999999999999999999999999999999999999999999999999999998765 6788999999999999
Q ss_pred ccCCchhhhhhhhchhHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCcccchhcchhhhcCCCCChH
Q 001598 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEACMFPRSTHE 158 (1047)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~ 158 (1047)
|..||||||||||||||||++|++++|+.|+++|.+|||+|+.++| .||++|||||+++|.|||++|||||.+|++||+
T Consensus 377 ~~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~ 456 (689)
T PF00063_consen 377 FSVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDE 456 (689)
T ss_dssp -SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HH
T ss_pred ccccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhh
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-cCCCCccCCC----CCCCCcEEEeeccceEEeccchhhhcchhhHHHHHHHHhhcCCcccccccccchh
Q 001598 159 TFAQKLYQTF-KNHKRFSKPK----LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAE 233 (1047)
Q Consensus 159 ~~~~kl~~~~-~~~~~~~~~~----~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~ 233 (1047)
+|++++...+ ++|+.|.+|+ .+...|+|+||||+|+|+++||++||+|.++++++++|+.|+++||+.||+....
T Consensus 457 ~fl~kl~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~ 536 (689)
T PF00063_consen 457 SFLEKLLKRHSGKHPSFVKPRFSRSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEAT 536 (689)
T ss_dssp HHHHHHHHHHTTTSTTEECTSSSTSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH
T ss_pred HHHHHHHhhcccCCCcccccccccccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccc
Confidence 9999999999 8899998885 3678999999999999999999999999999999999999999999999987542
Q ss_pred h---------------------ccCCCCCCchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhc
Q 001598 234 E---------------------SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRC 292 (1047)
Q Consensus 234 ~---------------------~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~v~~QLr~ 292 (1047)
. .....+.+||+++|+.+|+.||++|++|+||||||||||+.+.|+.||..+|.+||++
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~ 616 (689)
T PF00063_consen 537 ATSSSSSSLSRRSSSSSTQSRSSGSKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRY 616 (689)
T ss_dssp ---S-S-S-BTTTTCCCTTSSCCCGGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhh
Confidence 0 0011255899999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhhCCCCccChHHHHHHHhhhhcccCCC----CccHHHHHHHHHhhcCC--CCceeccceeeec
Q 001598 293 GGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDG----SSDEVTACKRLLEKVGL--EGYQIGKTKVFLR 359 (1047)
Q Consensus 293 ~gvle~~~i~~~Gyp~r~~~~~F~~ry~~l~~~~~~~----~~~~~~~~~~il~~~~~--~~~~iG~TkVFlr 359 (1047)
+||+|++++++.|||+|++|.+|+.||++|++..... ..++++.|+.||..+++ ++|++|+||||||
T Consensus 617 ~gile~vri~~~Gyp~r~~~~eF~~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 617 SGILETVRIRRQGYPVRLTFDEFLRRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp TTHHHHHHHHHCSSSEEEEHHHHHHHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhhhhhhhhhcccceecchhhhhhhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 9999999999999999999999999999999976532 46899999999999987 5899999999996
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=6.9e-52 Score=504.86 Aligned_cols=456 Identities=30% Similarity=0.416 Sum_probs=380.3
Q ss_pred CCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCC--CCcccccccccCCcc
Q 001598 2 CDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPN--SKSLIGVLDIYGFES 79 (1047)
Q Consensus 2 ~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~--~~~~IgvLDi~GFE~ 79 (1047)
+++..|.+++|.++.+++||.+..++++++|..+||++||.||++||.|||.+||..+.++.. ....||||||||||+
T Consensus 360 ~~~~~l~~alt~~~~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~ 439 (1062)
T KOG4229|consen 360 IKEKLLQEALTARVNVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFEN 439 (1062)
T ss_pred cCHHHhhhhhcccceeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccc
Confidence 678899999999999999999999999999999999999999999999999999999976544 368899999999999
Q ss_pred ccCCchhhhhhhhchhHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCcccchhcchhhhcCCCCChHH
Q 001598 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1047)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~~d~~ 159 (1047)
|..|||||+|||||||+||.+|++|||.+||+||..|+|+|..|.|.||.+|+|+|..||.||+.+||||+.+|+++|.+
T Consensus 440 f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~t 519 (1062)
T KOG4229|consen 440 FERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQT 519 (1062)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCccCCCCC-CCCcEEEeeccceEEeccchhhhcchhhHHHHHHHHhhcCCcccccccccchhhcc--
Q 001598 160 FAQKLYQTFKNHKRFSKPKLA-RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESS-- 236 (1047)
Q Consensus 160 ~~~kl~~~~~~~~~~~~~~~~-~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~-- 236 (1047)
++.|+..+++.+..|..|+.. ...|+|.||||.|.|++.||++||+|+++.++..++.+|.+.++..++...+....
T Consensus 520 l~~k~~~q~~~~~~y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~ 599 (1062)
T KOG4229|consen 520 LLLKLNMQHGSNNLYVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRW 599 (1062)
T ss_pred HHHHhhhhhhcccccccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcc
Confidence 999999999988888777654 46999999999999999999999999999999999999988877766542110000
Q ss_pred --------------------------------------------------------------C-----------------
Q 001598 237 --------------------------------------------------------------K----------------- 237 (1047)
Q Consensus 237 --------------------------------------------------------------~----------------- 237 (1047)
.
T Consensus 600 ~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~ 679 (1062)
T KOG4229|consen 600 FELRALKVAMPVPLEVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALE 679 (1062)
T ss_pred hhhhhhcccccccchhhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhh
Confidence 0
Q ss_pred -------------------------CC--------------C--------------------------------------
Q 001598 238 -------------------------TS--------------K-------------------------------------- 240 (1047)
Q Consensus 238 -------------------------~~--------------~-------------------------------------- 240 (1047)
.. +
T Consensus 680 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 759 (1062)
T KOG4229|consen 680 QGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLP 759 (1062)
T ss_pred hcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccchhhhhccccc
Confidence 00 0
Q ss_pred ------------CCchHH----------------HHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhc
Q 001598 241 ------------FSSIGS----------------RFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRC 292 (1047)
Q Consensus 241 ------------~~tv~~----------------~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~v~~QLr~ 292 (1047)
...++. .+......++..+....+.|++|++-|..+....|+...|..|+++
T Consensus 760 ~~~~~~~~~~~~~e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~ 839 (1062)
T KOG4229|consen 760 RYIPDPCLDPVRRERVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSY 839 (1062)
T ss_pred ccCccccCCccccchhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhc
Confidence 000111 1223344467777778889999999998888889999999999999
Q ss_pred cchhHHHHHHhhCCCCccChHHHHHHHhhhhcccCCCCccHHHHHHHHHhh--cCCCCceeccceeeecccccccchh-h
Q 001598 293 GGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEK--VGLEGYQIGKTKVFLRAGQMADLDA-R 369 (1047)
Q Consensus 293 ~gvle~~~i~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~--~~~~~~~iG~TkVFlr~~~~~~Le~-~ 369 (1047)
.|+.+..++...+|+..+++.+|..-+.+..|.... ......... .+.++++.|++++|+.......++. .
T Consensus 840 t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~~~------~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l 913 (1062)
T KOG4229|consen 840 TGELDQEQVRRSLYFAEISPQDSVNQSRIGLPETVD------TVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVAL 913 (1062)
T ss_pred hhhhccchheeccccccccchhccccccccCCccch------hhchhheeecccCccchhccceEEeecccchHHHHHHH
Confidence 999999999999999999999999999988773221 111122221 2446899999999998776544433 2
Q ss_pred hhhcchhhHHHHHHHhhhcccchhhhhhhhhHHhhhhHhhhhhhhhhhhh-ccchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001598 370 RTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYES-MRREASCLRIQRDLRMYLAKKAYKDMCFS 448 (1047)
Q Consensus 370 r~~~l~~aa~~IQ~~~R~~~~R~~~~~~r~a~i~iQa~~Rg~laR~~~~~-~r~~~aA~~IQ~~~R~~~~Rk~y~~~r~a 448 (1047)
..+....-+...|++++....++.+.++..+.+.+| |++++.|+.... .....+|+-+|..|+.+..+..+...+.+
T Consensus 914 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 991 (1062)
T KOG4229|consen 914 KDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRS 991 (1062)
T ss_pred hHhhHHHHHHHHHHHHHhhhccccchhhcchhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhh
Confidence 222222236678999999999999999999999999 888888775442 22345788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001598 449 AVCIQTGMRGMAARNEL 465 (1047)
Q Consensus 449 ~i~iQ~~~Rg~~ar~~~ 465 (1047)
.+.+|..+++...+..+
T Consensus 992 ~~~~~~~~~~~~~~~~~ 1008 (1062)
T KOG4229|consen 992 FIADQSPRSRPAYTMIF 1008 (1062)
T ss_pred hcchhcccccchhhhhH
Confidence 99999988887666554
No 23
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=99.93 E-value=7.2e-26 Score=260.29 Aligned_cols=235 Identities=21% Similarity=0.372 Sum_probs=193.6
Q ss_pred hhhhhhhhhHHHHHHHhh-hccCCCCCCcchHHHHHHHHhcccc--hhhhh----hHHHHHHHHHHHHhhcccCCCc-cc
Q 001598 744 SHIEHQHENVDALINCVA-KNLGYCNGKPVAAFTIYKCLLHWKS--FEAER----TSVFDRLIQMIGSAIENEDDND-HM 815 (1047)
Q Consensus 744 ~l~e~~~e~~~~Ll~~i~-~~~~~~~~~p~pA~il~~c~~~~~~--~~~e~----~~ll~~i~~~I~~~i~~~~~~~-~l 815 (1047)
.-.++.+..++-.+..++ .+.+.++++.+|-| =|..-.|++. +..|+ +.||.++.+.+..+++++.++. .|
T Consensus 541 ~si~~~d~~~~sfL~~vi~~~a~t~~~~~s~~y-~y~~S~~yrp~~~pTer~hk~i~f~~~~~s~~~~viQeq~~~~~~L 619 (1629)
T KOG1892|consen 541 ASIEFRDSSEDSFLSAVINTNASTVHFKLSPTY-RYVLSNQYRPDISPTERTHKVIAFVNKMVSMMEGVIQEQKNIAGAL 619 (1629)
T ss_pred cceecccCcHHHHHHHHHhCcccccccccCccc-chhhhcccccccCccccchhHHHHHHHHHHHHHHHHHHhhcccchh
Confidence 334466666777888877 56666677777765 2444446655 55555 5899999999999999876554 99
Q ss_pred chhHhhHHHHHHHHHHHhhhcCCCCCCCCCCCCCcccchhhcccccCCCCCchhhhhhhhhHHHHHhhhcchhHHHHHHH
Q 001598 816 AYWLSNTSTLLFLLQRSLKAAGASGATPHKKPPTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQL 895 (1047)
Q Consensus 816 afWLsN~~~Ll~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~f~q~L 895 (1047)
+|||+|++++|||++++-..+. |. . .-+..|
T Consensus 620 aFWmANaSEflhfik~Dr~ls~-----------------------~~-------------~-------------~aq~vl 650 (1629)
T KOG1892|consen 620 AFWMANASEFLHFIKQDRDLSR-----------------------IT-------------L-------------DAQDVL 650 (1629)
T ss_pred HHhhcCHHHHHHHHHhccchhh-----------------------ee-------------h-------------hHHHHH
Confidence 9999999999999988521110 11 0 223567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCCCCCCCCCccccHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q 001598 896 AAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKI 975 (1047)
Q Consensus 896 ~~~~~~iy~~l~~~~~k~L~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~ 975 (1047)
...|+.+|.-++.+++.+|++.++..++.... ..+..++|+++|+..|.+|+.|+|+..|++|+
T Consensus 651 a~~vq~aFr~LV~clqsel~~~~~afLden~~----------------~~~a~gdVlh~L~~aM~llRrCrvNAALTIQL 714 (1629)
T KOG1892|consen 651 AHLVQMAFRYLVHCLQSELNNYMPAFLDENSL----------------QRPAIGDVLHTLTGAMSLLRRCRVNAALTIQL 714 (1629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc----------------cCccccchHHHhHHHHHHHHHhccchHHHHHH
Confidence 78899999999999999999999999875333 23456799999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHhhhhc--CCCCCCchhhHHhhchhHHHHHHhhhcccccCCchHHhhhHHHHHhhhhccc
Q 001598 976 FTQTFSYINVQLFNSLLLR--RECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVCHF 1046 (1047)
Q Consensus 976 f~qlf~fin~~lfN~Ll~r--~~~cs~s~g~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~i~Qa~~lL~~~~ 1046 (1047)
|+|||+|||+++||+|+.. ..+|+--||.-|++.|..||.||...|.|++++ +||..|+||++||+++|
T Consensus 715 fsqLfH~iN~~~FN~lVt~~~s~~cs~~wGk~~~~rl~~ie~waErqGlElAAd--CHL~ri~Qaa~lL~~~K 785 (1629)
T KOG1892|consen 715 FSQLFHFINMWLFNRLVTDPDSGLCSHYWGKIIRQRLGHIEAWAERQGLELAAD--CHLSRIVQAATLLTMDK 785 (1629)
T ss_pred HHHHHHHHHHHHhhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHHhcchHhhh--ccHHHHHHHHHHHhccc
Confidence 9999999999999999998 679999999999999999999999999999988 59999999999999987
No 24
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=99.76 E-value=3e-19 Score=167.38 Aligned_cols=72 Identities=40% Similarity=0.651 Sum_probs=63.4
Q ss_pred HHHHHHHHhhhHHHHHhhhhcCCCCCCchhhHHhhchhHHHHHHhhhcccccCCchHHhhhHHHHHhhhhcccC
Q 001598 974 KIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVCHFT 1047 (1047)
Q Consensus 974 Q~f~qlf~fin~~lfN~Ll~r~~~cs~s~g~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~i~Qa~~lL~~~~~ 1047 (1047)
|+|+|||+|||+.+||+||.|+++|+|++|+|||+||+.||+||+++|.+.+ ++++|.||+||++|||++|+
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~l~~~--~~~~l~~l~Qa~~lL~~~k~ 72 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRRKYCSWSKGVQIRYNLSELEDWARSHGLEEA--AEEHLQPLSQAANLLQLRKS 72 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTTSTTH---HHHCHHHHHHHHHCCC--S
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCccccccHHHHHHHHHHHHHHHHhcccchh--HHHHHHHHHHHHHHHHhcCc
Confidence 8999999999999999999999999999999999999999999999994433 78999999999999999763
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.15 E-value=8.6e-08 Score=125.53 Aligned_cols=564 Identities=17% Similarity=0.181 Sum_probs=249.5
Q ss_pred hhhchhHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCcccchhcc--hhhhcCCCCChHHHHHHHHHH
Q 001598 90 INLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALL--DEACMFPRSTHETFAQKLYQT 167 (1047)
Q Consensus 90 iNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lL--dee~~~~~~~d~~~~~kl~~~ 167 (1047)
.+++-+-+....+..+|.. ...+...+++|+ .+-..+|.+++-...-||.+= ..-|. .--.+||.+-
T Consensus 413 ~~~~v~alAk~lYerlF~w-lV~riN~sld~~----~~~~~fIgvLDiaGFEIfe~nSFEQLci------NytnEkLQqf 481 (1930)
T KOG0161|consen 413 VLFAVEALAKALYERLFGW-LVKRINKSLDSK----QQRDYFIGVLDIAGFEIFEFNSFEQLCI------NYTNEKLQQF 481 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhc----cccCCcceeeeeccccccCcCCHHHHHH------HHHHHHHHhh
Confidence 7888888888888888854 567778888886 445556655554332222220 00111 0012345544
Q ss_pred hcCCCCccCCC----CCCCCcEEEeeccceEEeccchhhhcchhh--HHHHHHHHhhcCCcccccccccchhhccCCCCC
Q 001598 168 FKNHKRFSKPK----LARSDFTICHYAGDVTYQTELFLDKNKDYV--VAEHQALLSASKCSFVSSLFLPLAEESSKTSKF 241 (1047)
Q Consensus 168 ~~~~~~~~~~~----~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~--~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~ 241 (1047)
|. |.-|+.-. --.-.++.-||+-+- =.+.+.|+|=...+ -++-.-+..+|...|+..|+...- .+.++|
T Consensus 482 Fn-h~mFvlEqeeY~~EgIew~fidfG~Dl-q~~idLIEkp~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~---gk~~~f 556 (1930)
T KOG0161|consen 482 FN-HHMFVLEQEEYQREGIEWDFIDFGLDL-QPTIDLIEKPMGILSLLDEECVVPKATDKTFLEKLCDQHL---GKHPKF 556 (1930)
T ss_pred hc-chhhhhhHHHHHHhCCceeeeccccch-hhhHHHHhchhhHHHHHHHHHhcCCCccchHHHHHHHHhh---ccCccc
Confidence 43 33343210 011356666663221 11223333311111 011111122344445444443220 111222
Q ss_pred CchHHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCcccccchhhhhhccchhHHHHHHhhCCCCccChHHHHHHHhh
Q 001598 242 SSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGI 321 (1047)
Q Consensus 242 ~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~v~~QLr~~gvle~~~i~~~Gyp~r~~~~~F~~ry~~ 321 (1047)
.... ......-+....-+.+ |+|.-+|-..++..-.+..|..+|++++ .+.|...-.| +..++.+..++..
T Consensus 557 ~~~k---~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll~~s~-~~~v~~l~~~---~~~~~~~~~~~~~ 627 (1930)
T KOG0161|consen 557 QKPK---GKKAEAHFALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLLKQST-NKLVSSLFQD---YAGAAAAAKGGEA 627 (1930)
T ss_pred cCcc---cccchhhhheeeecce--eccCccchhhcCCCCchHHHHHHHHhcc-cHHHHHHhhh---hhccchhhhhhhh
Confidence 2111 2233333443444444 9999999988888888899999999999 8877776666 6666666666654
Q ss_pred hhcccCCC-----CccHHHHHHHHHhhcCCCCceeccceeee---ccccc---ccchhhhhhcchhhHHHHHHHhhhccc
Q 001598 322 LASKVLDG-----SSDEVTACKRLLEKVGLEGYQIGKTKVFL---RAGQM---ADLDARRTEVLGRSASIIQRKVRSYLS 390 (1047)
Q Consensus 322 l~~~~~~~-----~~~~~~~~~~il~~~~~~~~~iG~TkVFl---r~~~~---~~Le~~r~~~l~~aa~~IQ~~~R~~~~ 390 (1047)
....-.+ +.-.++....++..+.-+...|=+--|+. ++|++ ..|.++|..-+-. ++.|.+ .||-.
T Consensus 628 -~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLE-gIRicR--~GfPn 703 (1930)
T KOG0161|consen 628 -LKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLE-GIRICR--QGFPN 703 (1930)
T ss_pred -hcccCCcchhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHH-HHHHHH--hhCcc
Confidence 2111111 11123444444444332221111111111 11221 2333444332222 223322 46655
Q ss_pred chhhhhhhhhHHhhhhHh--hhhhh-----hhhhhhccc-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 391 RKNYIMLRRSAIHIQAAC--RGQLA-----RTVYESMRR-------EASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGM 456 (1047)
Q Consensus 391 R~~~~~~r~a~i~iQa~~--Rg~la-----R~~~~~~r~-------~~aA~~IQ~~~R~~~~Rk~y~~~r~a~i~iQ~~~ 456 (1047)
|..|...+.-.-.+.... .|+.. ++.+..+-. ...=+...+-+-+.+--.+-..+...++.+|+.+
T Consensus 704 r~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~ 783 (1930)
T KOG0161|consen 704 RMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAI 783 (1930)
T ss_pred ccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555443322111111111 11111 111110000 0001111222222333333445556788889999
Q ss_pred HHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHH---H----HHHHHHHHHH
Q 001598 457 RGMAARNELRFRRQT-RASILIQSHCRKYLARLHYMKL---KKAAITTQCAWRGKVARRELR---K----LKMAARETGA 525 (1047)
Q Consensus 457 Rg~~ar~~~~~~~~~-~aa~~IQ~~~R~~~~r~~~~~~---~~a~v~iQ~~~R~~~ark~l~---~----l~~~a~~~~~ 525 (1047)
||+++|+.+..+.+. .|+.+||+..|.|...+.|.=. .+.--.|++..+....++.-. . +...+.....
T Consensus 784 Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~e 863 (1930)
T KOG0161|consen 784 RGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWWRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRKE 863 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999998665544 6778999999999777664211 111111222212111111111 1 1111122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccc
Q 001598 526 LQAAKNKLEKQVEELTWRLQLEKRMRVDMEE---AKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEA-EKVPVVQ 601 (1047)
Q Consensus 526 l~~~~~~LE~kv~el~~~l~~e~~~~~~le~---~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~-ee~~~~~ 601 (1047)
+.....+++.+..+++..+..|+....+.++ ....+...++..+.+++.+++..+.... .++...+.. ++...++
T Consensus 864 le~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~-~le~~~~~~~~e~~~l~ 942 (1930)
T KOG0161|consen 864 LEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNA-ELERKKRKLEQEVQELK 942 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 2333334444444555554444433222222 2334455555566666666555544321 111111111 1111111
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 001598 602 EVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAES-------KIVQLKTAMHRLEEKV 674 (1047)
Q Consensus 602 e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~-------~l~~l~~~~~~Le~~l 674 (1047)
+.....+.....+..++..++..+..+++.+..+++.+.++-+++..++..+.++.. +...+......++..+
T Consensus 943 ~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l 1022 (1930)
T KOG0161|consen 943 EQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQL 1022 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112344455555566666666666655555555555555544444444444444 4444444444444444
Q ss_pred HhHHHHHHH
Q 001598 675 SDMETENQI 683 (1047)
Q Consensus 675 ~~Le~E~~~ 683 (1047)
..++..++.
T Consensus 1023 ~~le~~le~ 1031 (1930)
T KOG0161|consen 1023 DDLEVTLER 1031 (1930)
T ss_pred HHHHHHHHH
Confidence 444444443
No 26
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.55 E-value=3.7e-06 Score=102.83 Aligned_cols=85 Identities=39% Similarity=0.522 Sum_probs=80.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhh
Q 001598 424 ASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCA 503 (1047)
Q Consensus 424 ~aA~~IQ~~~R~~~~Rk~y~~~r~a~i~iQ~~~Rg~~ar~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~v~iQ~~ 503 (1047)
.+++.||+.+|+|..|+.|..+|.+++.||+.+||.++|+ ... +..||+.||+.||++..|+.|...+.+++.+|+.
T Consensus 674 ~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~ 750 (862)
T KOG0160|consen 674 AAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSG 750 (862)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999999999999999999999999 333 7789999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 001598 504 WRGKVARR 511 (1047)
Q Consensus 504 ~R~~~ark 511 (1047)
+|++++|.
T Consensus 751 ~r~~~~r~ 758 (862)
T KOG0160|consen 751 VRAMLARN 758 (862)
T ss_pred HHHHHhcc
Confidence 99999998
No 27
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.34 E-value=6.9e-07 Score=108.96 Aligned_cols=131 Identities=25% Similarity=0.332 Sum_probs=90.9
Q ss_pred hhcchhhHHHHHHHhhhcccchhhhhhhhhHHhhhhHhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 371 TEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAV 450 (1047)
Q Consensus 371 ~~~l~~aa~~IQ~~~R~~~~R~~~~~~r~a~i~iQa~~Rg~laR~~~~~~r~~~aA~~IQ~~~R~~~~Rk~y~~~r~a~i 450 (1047)
.+....++..||.++|+|..|+.|..++.-++.||+.+||+..|+.|.++- |--...++.|. ++.
T Consensus 806 ~r~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~-----------wSv~~lek~~l----rwR 870 (975)
T KOG0520|consen 806 DRSDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKIT-----------WSVGVLEKLIL----RWR 870 (975)
T ss_pred cccchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheec-----------hhhhHHHHHHH----HHH
Confidence 334567889999999999999999999999999999999999988887654 11122222222 334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HHHHHhhhHHHHHhhhHHHHHHHHHHHHHHH
Q 001598 451 CIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLAR--LHYMKLKKAAITTQCAWRGKVARRELRKLKM 518 (1047)
Q Consensus 451 ~iQ~~~Rg~~ar~~~~~~~~~~aa~~IQ~~~R~~~~r--~~~~~~~~a~v~iQ~~~R~~~ark~l~~l~~ 518 (1047)
.+|..+||+..|...... ..||+.||..+|-|+.- ..|.++.+|++.||+.+|.+.++.+++++..
T Consensus 871 ~k~~g~Rgfk~~~~~e~~--~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~~ 938 (975)
T KOG0520|consen 871 RKGKGFRGFKGRALFEEQ--ETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLLL 938 (975)
T ss_pred Hhhhhhcccccccchhcc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 566667777666554332 23677777777777666 5566777777777777777777766665543
No 28
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.23 E-value=0.00054 Score=86.88 Aligned_cols=88 Identities=23% Similarity=0.166 Sum_probs=73.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHh-h
Q 001598 424 ASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQ-C 502 (1047)
Q Consensus 424 ~aA~~IQ~~~R~~~~Rk~y~~~r~a~i~iQ~~~Rg~~ar~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~v~iQ-~ 502 (1047)
..++.||+.|||+..|++|.+.......+|...+|+..++.+..-.-..++..+|..|+....|..|......+..+| .
T Consensus 746 ~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~ 825 (1463)
T COG5022 746 NIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKT 825 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999988899999999999888777666666788899999999999999988888888888 5
Q ss_pred hHHHHHHHH
Q 001598 503 AWRGKVARR 511 (1047)
Q Consensus 503 ~~R~~~ark 511 (1047)
.+|....+.
T Consensus 826 i~~~~~~~~ 834 (1463)
T COG5022 826 IKREKKLRE 834 (1463)
T ss_pred HHHHHHHhH
Confidence 555555444
No 29
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.91 E-value=1.9e-05 Score=96.71 Aligned_cols=129 Identities=19% Similarity=0.170 Sum_probs=96.7
Q ss_pred hhHHHHHHHhhhcccchhhh-hhhh-----------hHHhhhhHhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHH
Q 001598 376 RSASIIQRKVRSYLSRKNYI-MLRR-----------SAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYK 443 (1047)
Q Consensus 376 ~aa~~IQ~~~R~~~~R~~~~-~~r~-----------a~i~iQa~~Rg~laR~~~~~~r~~~aA~~IQ~~~R~~~~Rk~y~ 443 (1047)
.+|..||..+|...-++.-. .+.. ..+.++...+ .+...+...||..||.++|+|+.|+.|.
T Consensus 757 ~aa~r~q~vfr~~~~~~~~a~~i~~~~~~~i~~~~~~~m~~~~a~~------~~~~r~~~~aa~~iq~~f~~yk~r~~~l 830 (975)
T KOG0520|consen 757 QAAARIQAVFRAQSFQKKQAREIMDATKEQISEELAVSMKASSAFS------MCDDRSDPAAASRIQKKFRGYKQRKEFL 830 (975)
T ss_pred HHHHhhhhhhhhhhhhhhhHHHHHhhcchhhhhhhhhhhhcccchh------cCccccchhHHHHhhhhhhhHHhhhhhc
Confidence 56788999998775553322 2211 1222333333 2233445679999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHH
Q 001598 444 DMCFSAVCIQTGMRGMAARNELRFR--------RQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVAR 510 (1047)
Q Consensus 444 ~~r~a~i~iQ~~~Rg~~ar~~~~~~--------~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~v~iQ~~~R~~~ar 510 (1047)
.++.-++.||+.+||+..|+.|... +-..++..+|+.+|+|+.+........+++.||...|.+..-
T Consensus 831 ~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~ 905 (975)
T KOG0520|consen 831 STRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQL 905 (975)
T ss_pred ccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHH
Confidence 9999999999999999999998432 233577889999999999999988888899999888876443
No 30
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.91 E-value=0.018 Score=69.55 Aligned_cols=63 Identities=21% Similarity=0.312 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 522 ETGALQAAKNKLEKQVEELTWRLQ---LEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLM 584 (1047)
Q Consensus 522 ~~~~l~~~~~~LE~kv~el~~~l~---~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~ 584 (1047)
+....++++.+....+.+....++ .++++..+..+....|.+.+++++++|+..++-++++++
T Consensus 291 e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEme 356 (1243)
T KOG0971|consen 291 EAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEME 356 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555544433 455565555566677888888888888888777766653
No 31
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.40 E-value=0.62 Score=58.76 Aligned_cols=75 Identities=21% Similarity=0.316 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 612 ~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
..+..++.+.+..++.++.+++.++..+..|+.+..+...++...++.....+..+..+..++.....++..|+.
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555566566666656666666666666666555666656666666666666666666666554
No 32
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.36 E-value=0.24 Score=62.22 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhhHHHHHhhhhcCCCC
Q 001598 972 VQKIFTQTFSYINVQLFNSLLLRRECC 998 (1047)
Q Consensus 972 ~~Q~f~qlf~fin~~lfN~Ll~r~~~c 998 (1047)
..|=|.-+..+-...-|+.++..|.||
T Consensus 931 ~~qk~r~~~~~~~~~~F~~~l~~R~~s 957 (1074)
T KOG0250|consen 931 KYQKFRKLLTRRATEEFDALLGKRGFS 957 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 344444555556666677777766655
No 33
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.35 E-value=0.023 Score=70.27 Aligned_cols=82 Identities=20% Similarity=0.215 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-------------------
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKI-------SEERLKQALEAESKIV------------------- 661 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~-------~~e~~~~l~~~e~~l~------------------- 661 (1047)
..+..+|+.|..+|+.++...++.+..++.+..+++.. .+.+...|..++++-.
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsa 623 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSA 623 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44566677777777777777777777776666544432 3333334433333222
Q ss_pred --HHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 001598 662 --QLKTAMHRLEEKVSDMETENQILRQQSL 689 (1047)
Q Consensus 662 --~l~~~~~~Le~~l~~Le~E~~~L~qq~~ 689 (1047)
+...+++-++..+...+.|+..|+++..
T Consensus 624 Lg~akrq~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 624 LGDAKRQLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466667777888888999999988654
No 34
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.036 Score=65.95 Aligned_cols=29 Identities=17% Similarity=0.393 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 614 LTSENEKLKTLVSSLEKKIDETEKKFEET 642 (1047)
Q Consensus 614 L~~e~~~L~~~l~~l~~~l~ele~~~~el 642 (1047)
++..+..|+.+++.|..++.++..++.+.
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dv 463 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDV 463 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 44444444444444444444444444443
No 35
>PRK11637 AmiB activator; Provisional
Probab=97.28 E-value=0.081 Score=62.69 Aligned_cols=68 Identities=15% Similarity=0.140 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001598 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1047)
Q Consensus 617 e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L 684 (1047)
++..++.+..+++....+++.+..+++....+....+..++.+....+.++..|+.+..+|+..+..+
T Consensus 185 ~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 185 QKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444444333444444444444445555555555555555444
No 36
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.24 E-value=0.11 Score=64.41 Aligned_cols=70 Identities=11% Similarity=0.243 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 617 e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
+.+.|...|..++++...||.-+..--+-+-++-..|-++..+++.++..+..-+.+|..|+..+.++--
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555566666666666666665556666666777777777777888888888888888888877664
No 37
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.22 E-value=0.8 Score=57.90 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=7.0
Q ss_pred HHHHHHHhhcCCC
Q 001598 335 TACKRLLEKVGLE 347 (1047)
Q Consensus 335 ~~~~~il~~~~~~ 347 (1047)
..+..+|...|+|
T Consensus 209 ~~V~~lLk~~gID 221 (1293)
T KOG0996|consen 209 KDVTKLLKSHGID 221 (1293)
T ss_pred HHHHHHHHhcCCC
Confidence 3455666655543
No 38
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.061 Score=64.10 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAE 657 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e 657 (1047)
...++.+++..+....+++.+..++.+++.++..+--++.++..+++..+
T Consensus 471 kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q 520 (1118)
T KOG1029|consen 471 KTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQ 520 (1118)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 33444455555555555555555555555555555555555555554433
No 39
>PRK11637 AmiB activator; Provisional
Probab=97.21 E-value=0.1 Score=61.77 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001598 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1047)
Q Consensus 614 L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~L 677 (1047)
++.+...++..+.+++....+++....+.+....++..+....+..+..++.+...++..|..+
T Consensus 189 le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 189 LEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444333344444444444444444444444444444443
No 40
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.19 E-value=0.82 Score=61.54 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhhhH
Q 001598 972 VQKIFTQTFSYINV 985 (1047)
Q Consensus 972 ~~Q~f~qlf~fin~ 985 (1047)
..+.|...|.-|+.
T Consensus 1016 ~~~~f~~~f~~~~~ 1029 (1164)
T TIGR02169 1016 KREVFMEAFEAINE 1029 (1164)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 41
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.19 E-value=0.5 Score=63.64 Aligned_cols=32 Identities=13% Similarity=0.315 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 656 ~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
++..+..++..+..++..+..++.++..++.+
T Consensus 411 l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~ 442 (1164)
T TIGR02169 411 LQEELQRLSEELADLNAAIAGIEAKINELEEE 442 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444443
No 42
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.12 E-value=0.26 Score=60.06 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=20.7
Q ss_pred ccccHHHHHHHHHHHHHHHHhcCCCHHH
Q 001598 944 ASSHWQSIIDSLNTLLSTLKQNFVPPVL 971 (1047)
Q Consensus 944 ~~~~~~~il~~L~~~~~~l~~~~v~~~l 971 (1047)
|..++...+..+|+.+.++...+++++.
T Consensus 897 p~~~lr~sleq~nstl~ll~~~~~~~Ey 924 (1243)
T KOG0971|consen 897 PYECLRQSLEQLNSTLNLLATAMQEGEY 924 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4557888888888888888777665544
No 43
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.08 E-value=0.21 Score=53.24 Aligned_cols=53 Identities=21% Similarity=0.217 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI 660 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l 660 (1047)
..+...|+.++..++....+++..+.++..++.+++++...+..++..++..+
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666665555555555555544444
No 44
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.07 E-value=0.13 Score=51.00 Aligned_cols=47 Identities=28% Similarity=0.340 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 526 LQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKL 583 (1047)
Q Consensus 526 l~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l 583 (1047)
.......++.++.++..+.. .+..++..|+..+..++.+++.++..+
T Consensus 12 a~~r~e~~e~~~K~le~~~~-----------~~E~EI~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 12 AQDRAEELEAKVKQLEQENE-----------QKEQEITSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666555 566777788888888888887777665
No 45
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=97.04 E-value=0.54 Score=49.17 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 663 LKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 663 l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
+-+++++|+++-..|..|+..-.+|
T Consensus 162 llesvqRLkdEardlrqelavr~kq 186 (333)
T KOG1853|consen 162 LLESVQRLKDEARDLRQELAVRTKQ 186 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345556666666666666555444
No 46
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.01 E-value=0.21 Score=57.27 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001598 627 SLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1047)
Q Consensus 627 ~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~ 682 (1047)
+..++...+...+.|-++-..++..++..-+.++.+|..+-.+|+..|.+++.+..
T Consensus 193 eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 193 EQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444445555555666677777777777777777775554
No 47
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.97 E-value=0.16 Score=62.83 Aligned_cols=49 Identities=24% Similarity=0.374 Sum_probs=25.8
Q ss_pred hhhchhHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCcccchhcchhhh
Q 001598 90 INLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEAC 150 (1047)
Q Consensus 90 iNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~ldli~~~~~Gil~lLdee~ 150 (1047)
.+-.|-++|++|.. -|++.....| +--..+-..+--||.-|++++.|.+
T Consensus 120 h~a~~~~vq~lF~S------------VqLNvNNP~FLIMQGrITkVLNMKp~EILsMvEEAA 169 (1174)
T KOG0933|consen 120 HLAQNSKVQDLFCS------------VQLNVNNPHFLIMQGRITKVLNMKPSEILSMVEEAA 169 (1174)
T ss_pred eeCchhHHHHHHHH------------hcccCCCCceEEecccchhhhcCCcHHHHHHHHHhh
Confidence 34566777777754 2444332233 1111223344456778888888754
No 48
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.92 E-value=0.0076 Score=71.02 Aligned_cols=61 Identities=23% Similarity=0.189 Sum_probs=50.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 001598 422 REASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMK 492 (1047)
Q Consensus 422 ~~~aA~~IQ~~~R~~~~Rk~y~~~r~a~i~iQ~~~Rg~~ar~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~ 492 (1047)
...-++.||+.||||.+|.+|++++.+++.|+ +||.+..+ ..+..||+.+|++..++.|.+
T Consensus 695 l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~k---------s~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 695 LPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLK---------SYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---------HHHHHHHHHHHhhhhccccCC
Confidence 34678899999999999999999999999999 88855332 345678999999999998865
No 49
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.91 E-value=0.0011 Score=42.74 Aligned_cols=20 Identities=45% Similarity=0.605 Sum_probs=14.6
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 001598 424 ASCLRIQRDLRMYLAKKAYK 443 (1047)
Q Consensus 424 ~aA~~IQ~~~R~~~~Rk~y~ 443 (1047)
.||++||++||||.+|+.|.
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 46777777777777777763
No 50
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.88 E-value=1.4 Score=54.82 Aligned_cols=11 Identities=27% Similarity=0.289 Sum_probs=7.1
Q ss_pred Cceeccceeee
Q 001598 348 GYQIGKTKVFL 358 (1047)
Q Consensus 348 ~~~iG~TkVFl 358 (1047)
.|.||.|-|+=
T Consensus 619 efvFG~tlVc~ 629 (1174)
T KOG0933|consen 619 EFVFGSTLVCD 629 (1174)
T ss_pred HHHhCceEEec
Confidence 46677776664
No 51
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.86 E-value=0.14 Score=60.51 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 001598 531 NKLEKQVEELTWRL 544 (1047)
Q Consensus 531 ~~LE~kv~el~~~l 544 (1047)
..|+.++.+++..|
T Consensus 167 ~~l~~~v~~l~~eL 180 (546)
T PF07888_consen 167 EQLREEVERLEAEL 180 (546)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 52
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.86 E-value=0.019 Score=73.11 Aligned_cols=118 Identities=24% Similarity=0.275 Sum_probs=70.8
Q ss_pred HHhhhhHhhhhhhhhhhhhccch---hhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH--HHHHHHH
Q 001598 401 AIHIQAACRGQLARTVYESMRRE---ASCLRIQRDLRMYLAKKAYKDM-------CFSAVCIQTGMRGMAA--RNELRFR 468 (1047)
Q Consensus 401 ~i~iQa~~Rg~laR~~~~~~r~~---~aA~~IQ~~~R~~~~Rk~y~~~-------r~a~i~iQ~~~Rg~~a--r~~~~~~ 468 (1047)
.+..|+.+||...|.....+--. .-..++|+..||+..|..+... -+.+..||+.|||+.. -+.....
T Consensus 510 ~is~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~ 589 (1401)
T KOG2128|consen 510 LISLQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLD 589 (1401)
T ss_pred HhhHHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHH
Confidence 33456666665554433222111 0112447777777766665432 2356677888888773 2222333
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHh-------hhHHHHHhhhHHHHHHHHHHHHHHH
Q 001598 469 RQTRASILIQSHCRKYLARLHYMKL-------KKAAITTQCAWRGKVARRELRKLKM 518 (1047)
Q Consensus 469 ~~~~aa~~IQ~~~R~~~~r~~~~~~-------~~a~v~iQ~~~R~~~ark~l~~l~~ 518 (1047)
-..+.++.+|++.||+..|..|.+. ..+++.||+++|....|..++.+.-
T Consensus 590 ~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~~ 646 (1401)
T KOG2128|consen 590 SAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLFT 646 (1401)
T ss_pred HhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHhc
Confidence 3446677788888888877776554 3567788888888888888777654
No 53
>PRK09039 hypothetical protein; Validated
Probab=96.81 E-value=0.18 Score=57.57 Aligned_cols=29 Identities=31% Similarity=0.382 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 522 ETGALQAAKNKLEKQVEELTWRLQLEKRM 550 (1047)
Q Consensus 522 ~~~~l~~~~~~LE~kv~el~~~l~~e~~~ 550 (1047)
++....++..+|+.++.+|..-+..+...
T Consensus 47 ~i~~~~~eL~~L~~qIa~L~e~L~le~~~ 75 (343)
T PRK09039 47 EISGKDSALDRLNSQIAELADLLSLERQG 75 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667777777776666644433
No 54
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.81 E-value=1.8 Score=54.94 Aligned_cols=7 Identities=29% Similarity=0.605 Sum_probs=3.3
Q ss_pred HHHHHHH
Q 001598 251 QLQQLLE 257 (1047)
Q Consensus 251 ~l~~L~~ 257 (1047)
.|..|+.
T Consensus 143 klS~LIh 149 (1293)
T KOG0996|consen 143 KLSALIH 149 (1293)
T ss_pred HHHHHHh
Confidence 3445554
No 55
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.77 E-value=0.59 Score=62.96 Aligned_cols=19 Identities=32% Similarity=0.200 Sum_probs=10.4
Q ss_pred CCCchhhHHhhchhHHHHH
Q 001598 998 CTFSNGEYVKAGLAELELW 1016 (1047)
Q Consensus 998 cs~s~g~qIr~nls~Le~W 1016 (1047)
-+.|.|++-+..|..+-.|
T Consensus 1088 ~~lS~g~~~~~~l~~~~~~ 1106 (1179)
T TIGR02168 1088 SLLSGGEKALTALALLFAI 1106 (1179)
T ss_pred cccCccHHHHHHHHHHHHH
Confidence 3446666666666555433
No 56
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.77 E-value=3 Score=56.23 Aligned_cols=9 Identities=22% Similarity=0.386 Sum_probs=3.9
Q ss_pred HHHHHhhcC
Q 001598 337 CKRLLEKVG 345 (1047)
Q Consensus 337 ~~~il~~~~ 345 (1047)
+..+|..++
T Consensus 124 ~~~~l~~~~ 132 (1179)
T TIGR02168 124 IQDLFLDTG 132 (1179)
T ss_pred HHHHHhccC
Confidence 344444443
No 57
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.75 E-value=1.4 Score=59.58 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 649 ~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
+...+...+.++.+++.++.+++.++..++.+++.++++
T Consensus 440 Le~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555555555555543
No 58
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.67 E-value=1.1 Score=59.91 Aligned_cols=10 Identities=10% Similarity=0.235 Sum_probs=5.2
Q ss_pred HHHHHHHHhh
Q 001598 334 VTACKRLLEK 343 (1047)
Q Consensus 334 ~~~~~~il~~ 343 (1047)
...|..+|..
T Consensus 554 a~~~i~~lk~ 563 (1163)
T COG1196 554 AKKAIEFLKE 563 (1163)
T ss_pred HHHHHHHHhh
Confidence 3445555554
No 59
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.61 E-value=0.34 Score=49.35 Aligned_cols=75 Identities=23% Similarity=0.235 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001598 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1047)
Q Consensus 614 L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~ 688 (1047)
+..++.+|+..+..+++....+-.+...++++...+..++..+++....+..+...+..+...|-.++..|+.|.
T Consensus 65 l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 65 LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 344445555555555555555555555555555555555555555555555555555555555555555554443
No 60
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.57 E-value=0.24 Score=58.73 Aligned_cols=25 Identities=28% Similarity=0.447 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 521 RETGALQAAKNKLEKQVEELTWRLQ 545 (1047)
Q Consensus 521 ~~~~~l~~~~~~LE~kv~el~~~l~ 545 (1047)
++...|......|+..+..++.++.
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~ 174 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVE 174 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666777777777666655
No 61
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.56 E-value=0.41 Score=54.49 Aligned_cols=82 Identities=20% Similarity=0.244 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHH
Q 001598 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHR----LEEKVSDMETENQ 682 (1047)
Q Consensus 607 ~~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~----Le~~l~~Le~E~~ 682 (1047)
+.+++..+..++..++.++++.++.+.+++.++.+++...++...+..++...+.+++..... -..++.+|+.+.+
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~ 286 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVD 286 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 456666777777777777777777666666666666666666666666666666555544432 3456777888888
Q ss_pred HHHHhc
Q 001598 683 ILRQQS 688 (1047)
Q Consensus 683 ~L~qq~ 688 (1047)
.|+...
T Consensus 287 ~Le~~~ 292 (325)
T PF08317_consen 287 ALEKLT 292 (325)
T ss_pred HHHHHH
Confidence 877643
No 62
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.56 E-value=4.4 Score=54.40 Aligned_cols=70 Identities=13% Similarity=0.292 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 618 NEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 618 ~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
...+..+..+...++..++.++..++.+...+..+++.+..++..+..++..++.++..++.++..+..+
T Consensus 385 ~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (1163)
T COG1196 385 LAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQ 454 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444444444444444444444444444444455555444443
No 63
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.55 E-value=0.099 Score=56.65 Aligned_cols=62 Identities=27% Similarity=0.329 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHR 669 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~ 669 (1047)
..++..|+.++...+...++...+..+...++..++..++.....+..++.++..|+.++..
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~ 152 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKS 152 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Confidence 33444444444444444444444444433333333333333333333333333333333333
No 64
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=96.53 E-value=0.0015 Score=82.79 Aligned_cols=267 Identities=17% Similarity=0.100 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHHHhccCCCeeeeecCCCCCCCCCccccc-chhhhhhccchhHHHHHHhhCCCCccChHHHHHHHhhhh
Q 001598 245 GSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENK-NVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILA 323 (1047)
Q Consensus 245 ~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~-~v~~QLr~~gvle~~~i~~~Gyp~r~~~~~F~~ry~~l~ 323 (1047)
+..++-++....+.|.+..+||.|||++|..-.+..++.. .+..++..-|...+......|+..+..|.+++.+++...
T Consensus 645 ~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1062)
T KOG4229|consen 645 LPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNSE 724 (1062)
T ss_pred cccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCccccccccchhhhccccccc
Confidence 4445557777777888889999999999999999999987 899999999999999999999999999999887666332
Q ss_pred cccCCCCccHHHHHHHHHhhcCCCCceeccceeeecccccccchhhhhhcch--------------------------hh
Q 001598 324 SKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLG--------------------------RS 377 (1047)
Q Consensus 324 ~~~~~~~~~~~~~~~~il~~~~~~~~~iG~TkVFlr~~~~~~Le~~r~~~l~--------------------------~a 377 (1047)
-.......-.+..|..++...+.+.+..+.+.++.+.---..+.-.+.+... ..
T Consensus 725 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~ 804 (1062)
T KOG4229|consen 725 YLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRRERVTQLRLHQHKKKAFPQPLRSPQVRKSKLES 804 (1062)
T ss_pred ccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccccchhhhHHHHHhhccccCccccccchhhccchh
Confidence 1111111122456667777777777788887777765333222222111111 11
Q ss_pred HHHHHHHhhhcccchhhhhh----hhhHHhhhhHhhhhhhhhhhhh----------------------------------
Q 001598 378 ASIIQRKVRSYLSRKNYIML----RRSAIHIQAACRGQLARTVYES---------------------------------- 419 (1047)
Q Consensus 378 a~~IQ~~~R~~~~R~~~~~~----r~a~i~iQa~~Rg~laR~~~~~---------------------------------- 419 (1047)
+..+|..+.....+..+... -..++..|..|-|...+...+.
T Consensus 805 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~~~~v~~~~~~~ 884 (1062)
T KOG4229|consen 805 YLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIGLPETVDTVADEEFST 884 (1062)
T ss_pred hhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccccCCccchhhchhheee
Confidence 22333333332222222111 1234444444444322222110
Q ss_pred ----------------------------ccchhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 001598 420 ----------------------------MRREAS---CLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELR-F 467 (1047)
Q Consensus 420 ----------------------------~r~~~a---A~~IQ~~~R~~~~Rk~y~~~r~a~i~iQ~~~Rg~~ar~~~~-~ 467 (1047)
+..+.. +...|++++....++.+..+..+.+.+| +++...|+... .
T Consensus 885 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~ 962 (1062)
T KOG4229|consen 885 LSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPVA 962 (1062)
T ss_pred cccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhcchhHHHH--HHHHhcccCCcch
Confidence 000001 2345677777777777777777777777 66666655332 2
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHH
Q 001598 468 RRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARREL 513 (1047)
Q Consensus 468 ~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~v~iQ~~~R~~~ark~l 513 (1047)
.....+++-+|..|+.+..+..+...++..+.+|..+++..-+...
T Consensus 963 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1008 (1062)
T KOG4229|consen 963 GAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMIF 1008 (1062)
T ss_pred hhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhhH
Confidence 2334567778888888888888877777877788777766555443
No 65
>PRK02224 chromosome segregation protein; Provisional
Probab=96.51 E-value=0.2 Score=65.32 Aligned_cols=10 Identities=0% Similarity=0.232 Sum_probs=4.8
Q ss_pred ChHHHHHHHH
Q 001598 156 THETFAQKLY 165 (1047)
Q Consensus 156 ~d~~~~~kl~ 165 (1047)
+-.++++.+.
T Consensus 35 GKStil~ai~ 44 (880)
T PRK02224 35 GKSSLLEACF 44 (880)
T ss_pred CHHHHHHHHH
Confidence 3445555543
No 66
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.50 E-value=0.0033 Score=40.43 Aligned_cols=19 Identities=58% Similarity=0.833 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 001598 472 RASILIQSHCRKYLARLHY 490 (1047)
Q Consensus 472 ~aa~~IQ~~~R~~~~r~~~ 490 (1047)
+||+.||++||||++|+.|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4566666666666666665
No 67
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.49 E-value=0.43 Score=58.47 Aligned_cols=28 Identities=25% Similarity=0.346 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 607 DHAVVEELTSENEKLKTLVSSLEKKIDE 634 (1047)
Q Consensus 607 ~~~~~~~L~~e~~~L~~~l~~l~~~l~e 634 (1047)
+...++..-.++..|+.++.+++...-.
T Consensus 151 dk~t~SRAlsQN~eLK~QL~Elq~~Fv~ 178 (617)
T PF15070_consen 151 DKATASRALSQNRELKEQLAELQDAFVK 178 (617)
T ss_pred cchHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666554433
No 68
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.48 E-value=0.78 Score=56.91 Aligned_cols=49 Identities=20% Similarity=0.196 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 001598 525 ALQAAKNKLEKQVEELTWRLQLEKRMRVDMEE---AKTQENAKLQSALQEMQ 573 (1047)
Q Consensus 525 ~l~~~~~~LE~kv~el~~~l~~e~~~~~~le~---~~~~e~~~L~~~l~~le 573 (1047)
.+......|+.+++.|+.++.......++++. ....|.++|+.++.-..
T Consensus 405 eleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~ 456 (1195)
T KOG4643|consen 405 ELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVT 456 (1195)
T ss_pred HHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455666666666666644444433332 22234444444444333
No 69
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.46 E-value=1 Score=48.82 Aligned_cols=75 Identities=19% Similarity=0.254 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001598 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1047)
Q Consensus 611 ~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~ 685 (1047)
+..|+.++..+...+..++..-..........+.....+..++.+++...+..+..+..|+..|..|+.++...+
T Consensus 143 i~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k 217 (237)
T PF00261_consen 143 IKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEK 217 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333444444444444555444444555555555555555555554433
No 70
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.36 E-value=1.4 Score=47.13 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 615 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA 653 (1047)
Q Consensus 615 ~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l 653 (1047)
......|+.++.++.+....+++++..++.....++..+
T Consensus 102 k~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 102 KERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 71
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.36 E-value=0.63 Score=46.10 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKI 645 (1047)
Q Consensus 613 ~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~ 645 (1047)
.|...+..|+.+++.....+.+...++.++...
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ 109 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVK 109 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433333
No 72
>PRK02224 chromosome segregation protein; Provisional
Probab=96.36 E-value=2.8 Score=54.75 Aligned_cols=23 Identities=22% Similarity=0.083 Sum_probs=13.1
Q ss_pred CCCCchhhHHhhchh----HHHHHHhh
Q 001598 997 CCTFSNGEYVKAGLA----ELELWCCQ 1019 (1047)
Q Consensus 997 ~cs~s~g~qIr~nls----~Le~W~~~ 1019 (1047)
.-..|.|++..++|+ ....|+..
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~ 805 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEG 805 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhc
Confidence 345677887655433 34466653
No 73
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.24 E-value=4.3 Score=51.30 Aligned_cols=17 Identities=12% Similarity=0.272 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhHHHHHH
Q 001598 666 AMHRLEEKVSDMETENQ 682 (1047)
Q Consensus 666 ~~~~Le~~l~~Le~E~~ 682 (1047)
.+.+...+|..|+++++
T Consensus 1725 ~L~~~~aeL~~Le~r~~ 1741 (1758)
T KOG0994|consen 1725 ALEDKAAELAGLEKRVE 1741 (1758)
T ss_pred HHHHHHHHhhhHHHHHH
Confidence 33334444444444443
No 74
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.21 E-value=8.1 Score=52.05 Aligned_cols=19 Identities=5% Similarity=-0.010 Sum_probs=9.9
Q ss_pred CChHHHHHHHHHHhcCCCC
Q 001598 155 STHETFAQKLYQTFKNHKR 173 (1047)
Q Consensus 155 ~~d~~~~~kl~~~~~~~~~ 173 (1047)
.+-.|++.-+---||..|.
T Consensus 28 ~GKTTlLRlip~FYGa~p~ 46 (1201)
T PF12128_consen 28 VGKTTLLRLIPFFYGADPS 46 (1201)
T ss_pred CcHHHHHHHHHHhcCCCcc
Confidence 3445566655555554443
No 75
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.19 E-value=0.087 Score=67.38 Aligned_cols=114 Identities=26% Similarity=0.256 Sum_probs=83.4
Q ss_pred HHHHhhhcccchhhh----hh-hhhHHhhhhHhhhhhhhhhhhhcc-----chhhhhHHHHHHHHHHH----HHHHHHHH
Q 001598 381 IQRKVRSYLSRKNYI----ML-RRSAIHIQAACRGQLARTVYESMR-----REASCLRIQRDLRMYLA----KKAYKDMC 446 (1047)
Q Consensus 381 IQ~~~R~~~~R~~~~----~~-r~a~i~iQa~~Rg~laR~~~~~~r-----~~~aA~~IQ~~~R~~~~----Rk~y~~~r 446 (1047)
.|..+|+...|..-- .. ..-...+|+..||+..|..++..- .......||+.|||+.. ...+....
T Consensus 513 ~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~ 592 (1401)
T KOG2128|consen 513 LQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAK 592 (1401)
T ss_pred HHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhh
Confidence 677777776665311 11 222344599999999887765422 34578899999999984 22334456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHHHHHhh
Q 001598 447 FSAVCIQTGMRGMAARNELRFRR-----QTRASILIQSHCRKYLARLHYMKLK 494 (1047)
Q Consensus 447 ~a~i~iQ~~~Rg~~ar~~~~~~~-----~~~aa~~IQ~~~R~~~~r~~~~~~~ 494 (1047)
.-++.+|++.||+++|+.+.... ...+++.||++.|+...|..|..+.
T Consensus 593 ~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~ 645 (1401)
T KOG2128|consen 593 KEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLF 645 (1401)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHh
Confidence 67899999999999998875433 3468889999999999999998875
No 76
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.17 E-value=0.86 Score=54.94 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
...+.++..++..++..+-+.+.+++.+.+++.+++++.......+...+++....++++++|-+....++++++.|+.
T Consensus 322 h~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn 400 (1265)
T KOG0976|consen 322 HLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKN 400 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666667777776666666666665555555555555555555555555544443
No 77
>PRK03918 chromosome segregation protein; Provisional
Probab=96.11 E-value=0.54 Score=61.28 Aligned_cols=71 Identities=24% Similarity=0.341 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001598 614 LTSENEKLKTLVSSLEKKIDETEKKFEETS-----KISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1047)
Q Consensus 614 L~~e~~~L~~~l~~l~~~l~ele~~~~el~-----~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L 684 (1047)
+..++..++..+..++..+.+++.++.++. ...+.+..++..++..+..+...+..++..+..++.+++.+
T Consensus 624 ~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~ 699 (880)
T PRK03918 624 LEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444443343333 33333333344444444444444444444444444444333
No 78
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.09 E-value=0.37 Score=57.18 Aligned_cols=74 Identities=26% Similarity=0.348 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001598 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1047)
Q Consensus 610 ~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~ 683 (1047)
....++.++.+|+.++++++.++++.++.....+.........+.+++.++..+......+++++..|..|+..
T Consensus 107 ~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~r 180 (546)
T KOG0977|consen 107 ERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSR 180 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44556666666666666666666666555555555555544444444444444444444444444444444433
No 79
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=6 Score=48.59 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
......+.++...+...++.......+..+....++.+.++..+++++++..+.+...++..+..+..++++|+..|+.+
T Consensus 537 t~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~k 616 (698)
T KOG0978|consen 537 TSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRK 616 (698)
T ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888888888888888999999999999999999999999999999999999999999999999999987
Q ss_pred cccc
Q 001598 688 SLLS 691 (1047)
Q Consensus 688 ~~~~ 691 (1047)
....
T Consensus 617 le~~ 620 (698)
T KOG0978|consen 617 LERL 620 (698)
T ss_pred HHHh
Confidence 7543
No 80
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.95 E-value=2.2 Score=43.52 Aligned_cols=79 Identities=23% Similarity=0.235 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001598 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1047)
Q Consensus 607 ~~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~ 685 (1047)
.+.++.+|..+...+...+..+....+.+.......+.....+..+|.+++..-...+..+..|+..+..|+..+...+
T Consensus 107 ~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k 185 (205)
T KOG1003|consen 107 AESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAK 185 (205)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHH
Confidence 3556667777777777777777777777777777777777777777766555555555555555555555555544433
No 81
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.90 E-value=1.2 Score=43.63 Aligned_cols=60 Identities=18% Similarity=0.270 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001598 621 LKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1047)
Q Consensus 621 L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E 680 (1047)
|+.++..+...+..++..+..+..++..+.+.++..+.++.+|+....++...|..++.+
T Consensus 57 L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 57 LEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333333333333333333333444444444444444444444444444444444444433
No 82
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.88 E-value=11 Score=50.76 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=13.7
Q ss_pred CCcEEEe--ecc-ceEEe-------ccchhhhcc
Q 001598 182 SDFTICH--YAG-DVTYQ-------TELFLDKNK 205 (1047)
Q Consensus 182 ~~F~i~H--yag-~V~Y~-------~~~fl~kN~ 205 (1047)
..++|-| +-| -|.|- .+.|++.+.
T Consensus 81 ~~~vvl~~~s~g~~V~YRFId~~y~~e~fi~~~~ 114 (1201)
T PF12128_consen 81 LCCVVLSRKSDGRGVQYRFIDAPYQRELFIDENN 114 (1201)
T ss_pred eeEEEEeecCCCCceeeeeccCccchhhcccccC
Confidence 4577777 455 46665 344555544
No 83
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.86 E-value=1.9 Score=53.20 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKID 633 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ 633 (1047)
..++..+..++..++.++..++..+.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555
No 84
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.81 E-value=1 Score=44.11 Aligned_cols=27 Identities=30% Similarity=0.624 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001598 662 QLKTAMHRLEEKVSDMETENQILRQQS 688 (1047)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~E~~~L~qq~ 688 (1047)
.++.++..++..+..|..+|..|-.|.
T Consensus 102 ~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666665554
No 85
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.81 E-value=3 Score=45.15 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 558 KTQENAKLQSALQEMQLQFKESKEKL 583 (1047)
Q Consensus 558 ~~~e~~~L~~~l~~le~~l~~~~~~l 583 (1047)
...++.+++.++..++.+++..++.+
T Consensus 71 ~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 71 LQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555443
No 86
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.79 E-value=1 Score=49.78 Aligned_cols=68 Identities=13% Similarity=0.222 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001598 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1047)
Q Consensus 610 ~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~L 677 (1047)
++..|..++..++..+..+-...+++...+...+..-..+..++.+++++..+....+.+.+++++.+
T Consensus 235 EIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 235 EITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444444444444444555555555555544444444444443
No 87
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.79 E-value=2.3 Score=44.80 Aligned_cols=78 Identities=21% Similarity=0.251 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE-AESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~-~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~ 685 (1047)
..++..++.++..|+-+.+.++.+...++.+..++.........++.+ ..-+-.-|+..+..|.+.+...+.++...-
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl 170 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVL 170 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777777777777777766665555533 333344567777777777777777765443
No 88
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.79 E-value=1.7 Score=52.49 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 656 ~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
.+.+-..|..++.+-++-++.++++++.++|.
T Consensus 275 lk~kns~L~~ElSqkeelVk~~qeeLd~lkqt 306 (1265)
T KOG0976|consen 275 LKAKNSVLGDELSQKEELVKELQEELDTLKQT 306 (1265)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33334455666666666666667777666663
No 89
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.78 E-value=5.7 Score=48.06 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 001598 428 RIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLK 494 (1047)
Q Consensus 428 ~IQ~~~R~~~~Rk~y~~~r~a~i~iQ~~~Rg~~ar~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~ 494 (1047)
.|++ +-.|+.+.+|.+...++..+=.. +.+. .-+..+.+++|+..|||++|+++....
T Consensus 779 lv~k-Vn~WLv~sRWkk~q~~a~sVIKL------kNkI--~yRae~v~k~Q~~~Rg~L~rkr~~~ri 836 (1259)
T KOG0163|consen 779 LVAK-VNKWLVRSRWKKSQYGALSVIKL------KNKI--IYRAECVLKAQRIARGYLARKRHRPRI 836 (1259)
T ss_pred HHHH-HHHHHHHhHHHHhhhhhhheeeh------hhHH--HHHHHHHHHHHHHHHHHHHHhhhchHH
Confidence 3443 56677777777654432211100 1111 112246677888888888888776543
No 90
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.75 E-value=4.7 Score=45.56 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 524 GALQAAKNKLEKQVEELTWRLQLEKRMRV 552 (1047)
Q Consensus 524 ~~l~~~~~~LE~kv~el~~~l~~e~~~~~ 552 (1047)
..+......+...+.++..++..+...+.
T Consensus 71 a~l~~e~~~l~~e~~~~r~k~e~e~~~~~ 99 (312)
T PF00038_consen 71 ARLELEIDNLKEELEDLRRKYEEELAERK 99 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555554443333
No 91
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=95.75 E-value=2.5 Score=46.36 Aligned_cols=52 Identities=33% Similarity=0.305 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 635 TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 635 le~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
.++.+.+.+.+.+-+..+++..+..-+.+.+++..|++-++.++...+.++-
T Consensus 243 vek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p 294 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRP 294 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 4455566666666666677677777777888888999999988888776653
No 92
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.74 E-value=2.5 Score=50.46 Aligned_cols=81 Identities=19% Similarity=0.190 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME----TENQI 683 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le----~E~~~ 683 (1047)
...+..++++...++..+..+++++..+.++...+..++....+++++...--.+++..++.|.++|.-+. .|+..
T Consensus 147 ~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e 226 (546)
T KOG0977|consen 147 LSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEE 226 (546)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 45566667777777777777777777777766666666666666665555444566666666666666655 55555
Q ss_pred HHHhc
Q 001598 684 LRQQS 688 (1047)
Q Consensus 684 L~qq~ 688 (1047)
++..+
T Consensus 227 ~~~~~ 231 (546)
T KOG0977|consen 227 ERRKA 231 (546)
T ss_pred HHHHH
Confidence 55443
No 93
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.72 E-value=1.2 Score=50.82 Aligned_cols=67 Identities=28% Similarity=0.357 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHH
Q 001598 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQ----LKTAMHRLEEKVSDMETE 680 (1047)
Q Consensus 614 L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~----l~~~~~~Le~~l~~Le~E 680 (1047)
+..++...+..+.+++.++.+++.+++++..++.++..++.+++..+.. -..++..|+.++..|+.-
T Consensus 221 ~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 221 QKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444444444444433321 134455555555555443
No 94
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.71 E-value=2.1 Score=48.12 Aligned_cols=78 Identities=14% Similarity=0.243 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHH
Q 001598 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHR----LEEKVSDMETENQILRQ 686 (1047)
Q Consensus 611 ~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~----Le~~l~~Le~E~~~L~q 686 (1047)
...+..++.++..++.....++.+++.++.+++...++...+..+.+..+.+++..... -..++..|+.+.+.|++
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444433333333333333333332222 22456667777777766
Q ss_pred hc
Q 001598 687 QS 688 (1047)
Q Consensus 687 q~ 688 (1047)
..
T Consensus 286 l~ 287 (312)
T smart00787 286 LT 287 (312)
T ss_pred Hh
Confidence 43
No 95
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.71 E-value=0.0098 Score=40.47 Aligned_cols=21 Identities=43% Similarity=0.605 Sum_probs=16.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 001598 423 EASCLRIQRDLRMYLAKKAYK 443 (1047)
Q Consensus 423 ~~aA~~IQ~~~R~~~~Rk~y~ 443 (1047)
..+|+.||++||||.+|+.|.
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 357888888888888888873
No 96
>PRK09039 hypothetical protein; Validated
Probab=95.64 E-value=0.31 Score=55.75 Aligned_cols=142 Identities=9% Similarity=0.093 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 001598 525 ALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVP 604 (1047)
Q Consensus 525 ~l~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~ 604 (1047)
-|.++...+++++.+++.++.. -.++..-.......++.++.+++.++..++... ...+...+.. .+..
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa~----L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r----~~Le~~~~~~---~~~~ 111 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIAE----LADLLSLERQGNQDLQDSVANLRASLSAAEAER----SRLQALLAEL---AGAG 111 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHhhh---hhhc
Confidence 4677788888888888877763 222222344556667777777777777555442 1121111111 0111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001598 605 VIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1047)
Q Consensus 605 ~~~~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~L 677 (1047)
...+.+...+..++..++....+..-++..+..+++.+++....++..|..++.+..+.+..+.+|+..+...
T Consensus 112 ~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 112 AAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234555555666666666666666666666666666666555555555555555555555555555444444
No 97
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.59 E-value=3.2 Score=46.44 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 657 e~~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
.+.+.+-+..++.||.....|+.|...|+.
T Consensus 251 ~e~I~~re~~lq~lEt~q~~leqeva~le~ 280 (499)
T COG4372 251 AEQIRERERQLQRLETAQARLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666666666666655
No 98
>PRK03918 chromosome segregation protein; Provisional
Probab=95.54 E-value=2.1 Score=55.94 Aligned_cols=18 Identities=39% Similarity=0.438 Sum_probs=13.3
Q ss_pred CCCCCCchhhHHhhchhH
Q 001598 995 RECCTFSNGEYVKAGLAE 1012 (1047)
Q Consensus 995 ~~~cs~s~g~qIr~nls~ 1012 (1047)
+..-+.|.|++.+.+|+.
T Consensus 784 ~~~~~lS~G~~~~~~la~ 801 (880)
T PRK03918 784 RPLTFLSGGERIALGLAF 801 (880)
T ss_pred CChhhCCHhHHHHHHHHH
Confidence 346677888888888774
No 99
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.53 E-value=8 Score=47.96 Aligned_cols=16 Identities=25% Similarity=0.218 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhccCC
Q 001598 248 FKQQLQQLLETLSSSE 263 (1047)
Q Consensus 248 f~~~l~~L~~~l~~t~ 263 (1047)
|-.-+..+|-.|.+|=
T Consensus 201 lY~y~vkmlfkLHs~v 216 (980)
T KOG0980|consen 201 LYDYLVKMLFKLHSQV 216 (980)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 3444455555555443
No 100
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.51 E-value=6.1 Score=48.94 Aligned_cols=52 Identities=17% Similarity=0.142 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIV 661 (1047)
Q Consensus 610 ~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~ 661 (1047)
+..+|...+.+++.+.+..+.+.++..+.+..++.++..+..+++.++.+++
T Consensus 467 ~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~ 518 (980)
T KOG0980|consen 467 ENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLS 518 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445555555555555555555566666666666666666666655544
No 101
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.47 E-value=3.1 Score=51.23 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001598 610 VVEELTSENEKLKTLVS 626 (1047)
Q Consensus 610 ~~~~L~~e~~~L~~~l~ 626 (1047)
.+..++.+++.++..+.
T Consensus 307 ~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 307 KLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 102
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.46 E-value=3.6 Score=42.93 Aligned_cols=28 Identities=39% Similarity=0.449 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 611 VEELTSENEKLKTLVSSLEKKIDETEKK 638 (1047)
Q Consensus 611 ~~~L~~e~~~L~~~l~~l~~~l~ele~~ 638 (1047)
.++|..++..++..+++...++..++++
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~ 147 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQ 147 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555554443
No 103
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.40 E-value=1.2 Score=47.50 Aligned_cols=72 Identities=19% Similarity=0.151 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 001598 618 NEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1047)
Q Consensus 618 ~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~~ 689 (1047)
...|+.+...+.+..+.+++....+..++.-.+.++.-++.++......+..|+.++++++.|++..++.+.
T Consensus 62 ~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 62 YSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444444444455555555556666666666666777777777888888888888888888887776554
No 104
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.28 E-value=4.9 Score=46.44 Aligned_cols=43 Identities=19% Similarity=0.225 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001598 643 SKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1047)
Q Consensus 643 ~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~ 685 (1047)
.....|..+-+.+++..+...+..+++|..+-.+|+.++..++
T Consensus 202 ~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 202 AQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333333333444444555555555555555566666666665
No 105
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.24 E-value=3 Score=56.64 Aligned_cols=7 Identities=14% Similarity=0.249 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 001598 951 IIDSLNT 957 (1047)
Q Consensus 951 il~~L~~ 957 (1047)
+...|..
T Consensus 1244 l~~~l~~ 1250 (1311)
T TIGR00606 1244 LAHALVE 1250 (1311)
T ss_pred HHHHHHH
Confidence 3333333
No 106
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.11 E-value=13 Score=46.71 Aligned_cols=150 Identities=19% Similarity=0.273 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHH
Q 001598 522 ETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMK-------------EIE 588 (1047)
Q Consensus 522 ~~~~l~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~-------------e~~ 588 (1047)
.-.+|......+++++..|++.++ .+......++.++++++.+++.++.+... +..
T Consensus 171 ~~~hL~velAdle~kir~LrqElE-----------EK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeld 239 (1195)
T KOG4643|consen 171 KNLHLEVELADLEKKIRTLRQELE-----------EKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELD 239 (1195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 345677777778888887777766 22333344444444444444444332211 111
Q ss_pred HHHHHhhcc-ccccccchh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 001598 589 VAKKEAEKV-PVVQEVPVI---DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKIS--EERLKQALEAESKIVQ 662 (1047)
Q Consensus 589 ~~~~~~ee~-~~~~e~~~~---~~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~--~e~~~~l~~~e~~l~~ 662 (1047)
+.....+.. ...++.... -.+++++|..-+.-|.++-+-+++. +..++... ..++.++-..+.+++.
T Consensus 240 alre~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQ-------Lq~lrarse~~tleseiiqlkqkl~d 312 (1195)
T KOG4643|consen 240 ALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQ-------LQKLRARSEGATLESEIIQLKQKLDD 312 (1195)
T ss_pred HHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHH-------HHHHHhccccCChHHHHHHHHHHHHH
Confidence 111111111 011111110 1334444444444444444434333 33333333 3445555556666666
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 001598 663 LKTAMHRLEEKVSDMETENQILRQQSL 689 (1047)
Q Consensus 663 l~~~~~~Le~~l~~Le~E~~~L~qq~~ 689 (1047)
++.+..-.+.+++.|..||..|+-+..
T Consensus 313 m~~erdtdr~kteeL~eEnstLq~q~e 339 (1195)
T KOG4643|consen 313 MRSERDTDRHKTEELHEENSTLQVQKE 339 (1195)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666655443
No 107
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=95.09 E-value=0.71 Score=53.21 Aligned_cols=75 Identities=20% Similarity=0.210 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 612 ~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
.....++.+|..++.++++++....-+.+++...+......-.+++..+.++++...+....+..-++|++.|+.
T Consensus 229 ~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 229 SRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334445555555555555555544444444443333333333334444444555555555555555566655553
No 108
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=3.9 Score=47.72 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcc
Q 001598 666 AMHRLEEKVSDMETENQILRQQSL 689 (1047)
Q Consensus 666 ~~~~Le~~l~~Le~E~~~L~qq~~ 689 (1047)
+...|+-+|++|+++.+-|.+|..
T Consensus 195 EyEglkheikRleEe~elln~q~e 218 (772)
T KOG0999|consen 195 EYEGLKHEIKRLEEETELLNSQLE 218 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888888888888764
No 109
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=95.07 E-value=8.9 Score=46.59 Aligned_cols=80 Identities=19% Similarity=0.280 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIV------------------------QL 663 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~------------------------~l 663 (1047)
...+..|......|+..+.+++.+...+.++++...++.+.+.+++...+..+. ..
T Consensus 161 q~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~w 240 (739)
T PF07111_consen 161 QEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAW 240 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHH
Confidence 445566666666666666666666655555666655555555555544333332 12
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 664 KTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 664 ~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
+.+...|.+.+..|+++-+.|...
T Consensus 241 e~Er~~L~~tVq~L~edR~~L~~T 264 (739)
T PF07111_consen 241 EPEREELLETVQHLQEDRDALQAT 264 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666666553
No 110
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.06 E-value=15 Score=46.86 Aligned_cols=37 Identities=3% Similarity=-0.014 Sum_probs=18.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 424 ASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMA 460 (1047)
Q Consensus 424 ~aA~~IQ~~~R~~~~Rk~y~~~r~a~i~iQ~~~Rg~~ 460 (1047)
.++..-|..|..|..-+.-.+.-.-+...++-++...
T Consensus 211 ~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~ 247 (1141)
T KOG0018|consen 211 GKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLK 247 (1141)
T ss_pred HHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHH
Confidence 3555566666666655554444444444444444333
No 111
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.03 E-value=11 Score=45.32 Aligned_cols=51 Identities=25% Similarity=0.232 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 530 KNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESK 580 (1047)
Q Consensus 530 ~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~ 580 (1047)
-..|-.+|.+|+..|...+...+..|...+.|+..|+.++++.+...+++-
T Consensus 582 ~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~ 632 (961)
T KOG4673|consen 582 ESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELI 632 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777666655554444455556667777766666665555543
No 112
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.00 E-value=17 Score=49.30 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001598 638 KFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1047)
Q Consensus 638 ~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~ 688 (1047)
.+..+...+.++...+..+...+..+++.+..|+.++..|+.++.....+.
T Consensus 838 ~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~ 888 (1822)
T KOG4674|consen 838 QLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQL 888 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 333344444444444444555555555556666666666666665554433
No 113
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.98 E-value=7 Score=43.35 Aligned_cols=61 Identities=18% Similarity=0.302 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001598 616 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSD 676 (1047)
Q Consensus 616 ~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~ 676 (1047)
.+....+.++..+..++-+++++...+-.+.+++...|......-..|..++.+|+++-..
T Consensus 227 Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E 287 (306)
T PF04849_consen 227 EENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAE 287 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445555555555555555555555555555444444455555555544443
No 114
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.97 E-value=5 Score=41.12 Aligned_cols=39 Identities=26% Similarity=0.218 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKIS 646 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~ 646 (1047)
..++..|+.++.++....+-+.++..++-.+...++..+
T Consensus 101 ~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 101 VAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 455666666666666666666666666655555555544
No 115
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.93 E-value=2.5 Score=41.40 Aligned_cols=66 Identities=18% Similarity=0.294 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001598 611 VEELTSENEKLKTLVSSLEKKIDETEKKFE----ETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSD 676 (1047)
Q Consensus 611 ~~~L~~e~~~L~~~l~~l~~~l~ele~~~~----el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~ 676 (1047)
+..+..+...++..+..++...+.....+. ..+.+...+.+++.+++.++++|..++.-|-++|..
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444443333332 334455556666667777777777666666666554
No 116
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.91 E-value=6 Score=41.71 Aligned_cols=79 Identities=20% Similarity=0.236 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHH
Q 001598 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKIS-------EERLKQALEAESKIVQLKTAM---HRLEEKVSDMETE 680 (1047)
Q Consensus 611 ~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~-------~e~~~~l~~~e~~l~~l~~~~---~~Le~~l~~Le~E 680 (1047)
++.|+..+..+...-+.+.+-+.++++....++..+ ++...+|..+-++..-|+.++ +.|-+.+.+|++|
T Consensus 93 ~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdE 172 (333)
T KOG1853|consen 93 ESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDE 172 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555444 444444544444444444443 3355667778888
Q ss_pred HHHHHHhcc
Q 001598 681 NQILRQQSL 689 (1047)
Q Consensus 681 ~~~L~qq~~ 689 (1047)
-..|+|...
T Consensus 173 ardlrqela 181 (333)
T KOG1853|consen 173 ARDLRQELA 181 (333)
T ss_pred HHHHHHHHH
Confidence 888887543
No 117
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=94.90 E-value=2.2 Score=51.18 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=13.5
Q ss_pred CCCCCCchhhHHhhchhHHHHHHhhhcc
Q 001598 995 RECCTFSNGEYVKAGLAELELWCCQAKE 1022 (1047)
Q Consensus 995 ~~~cs~s~g~qIr~nls~Le~W~~~~~~ 1022 (1047)
++..-|+|- ++-.|+.+.|+
T Consensus 756 ~DvlVWsN~--------RvirWV~~igL 775 (916)
T KOG0249|consen 756 TDVLVWSND--------RVIRWVQSIGL 775 (916)
T ss_pred ccceEeecH--------HHHHHHHhcCH
Confidence 456778884 55568888763
No 118
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.89 E-value=0.027 Score=38.33 Aligned_cols=20 Identities=60% Similarity=0.871 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 001598 471 TRASILIQSHCRKYLARLHY 490 (1047)
Q Consensus 471 ~~aa~~IQ~~~R~~~~r~~~ 490 (1047)
.++|+.||++||||.+|+.|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 35777888888888888776
No 119
>PTZ00014 myosin-A; Provisional
Probab=94.84 E-value=0.038 Score=69.69 Aligned_cols=39 Identities=15% Similarity=0.004 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 425 SCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARN 463 (1047)
Q Consensus 425 aA~~IQ~~~R~~~~Rk~y~~~r~a~i~iQ~~~Rg~~ar~ 463 (1047)
.++.||++||||++|+.|.+.+.+++.||+.+||+++++
T Consensus 779 ~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~ 817 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIA 817 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777777766666666666666665554
No 120
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.83 E-value=12 Score=44.61 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHH
Q 001598 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLK----TAMHRLEEKVSDMETENQIL 684 (1047)
Q Consensus 610 ~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~----~~~~~Le~~l~~Le~E~~~L 684 (1047)
.+.+...+....+..+.-+++.+..+...+.+..........++..+.+++.... ++...-+.+++.|++++..+
T Consensus 426 l~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l 504 (581)
T KOG0995|consen 426 LLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNL 504 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555666666666666666666666555554332 22233334444444444433
No 121
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=94.82 E-value=7.3 Score=42.24 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 001598 645 ISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1047)
Q Consensus 645 ~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~~ 689 (1047)
..-....+...+...+....+.+.+++++|..|+.|++.|+.++.
T Consensus 180 ~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 180 ALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333334444556777778888999999999999999999988765
No 122
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.63 E-value=10 Score=47.56 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001598 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1047)
Q Consensus 649 ~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L 684 (1047)
+.+++..++.++.+++.++..+++++..+++++..+
T Consensus 426 l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 461 (650)
T TIGR03185 426 LLEELGEAQNELFRSEAEIEELLRQLETLKEAIEAL 461 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444333
No 123
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.63 E-value=10 Score=42.93 Aligned_cols=71 Identities=18% Similarity=0.230 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001598 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ----ALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1047)
Q Consensus 613 ~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~----l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~ 683 (1047)
.+..++..++..+..+..++..++.....++....++... +...+..+..++.++..++..+.....+.+.
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~ 287 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQE 287 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444333333333333333222 2233334444445555555444444444433
No 124
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.55 E-value=0.32 Score=51.03 Aligned_cols=77 Identities=23% Similarity=0.324 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 610 ~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
++..+..+.......+..++..+..++.++..++.+..+..+.++.+...+..++-+...+++++.+|+.|+..|-+
T Consensus 103 ~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 103 ELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555555555555555555555566666666777777788888888888877654
No 125
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=94.51 E-value=7.6 Score=41.10 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 630 KKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 630 ~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
...++++....++-...+++..+++..++.+--|+.+++..+.+|..|+..++.+.+
T Consensus 250 s~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sq 306 (330)
T KOG2991|consen 250 SQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQ 306 (330)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555555566666666666666666666666666655554
No 126
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=94.50 E-value=6.7 Score=40.40 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhH
Q 001598 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAE------------SKIVQLKTAMHRLEEKVSDM 677 (1047)
Q Consensus 610 ~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e------------~~l~~l~~~~~~Le~~l~~L 677 (1047)
+...+..+...++.++.+.++.+..++..+..++.+...+......+. ...+...+.+..++..+..+
T Consensus 85 Kl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l 164 (177)
T PF13870_consen 85 KLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKEL 164 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444333333322 23344455555566666666
Q ss_pred HHHHHHHHH
Q 001598 678 ETENQILRQ 686 (1047)
Q Consensus 678 e~E~~~L~q 686 (1047)
+...+.+..
T Consensus 165 ~rk~~~l~~ 173 (177)
T PF13870_consen 165 ERKVEILEM 173 (177)
T ss_pred HHHHHHHHH
Confidence 666555543
No 127
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.46 E-value=5.7 Score=49.97 Aligned_cols=27 Identities=33% Similarity=0.537 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 557 AKTQENAKLQSALQEMQLQFKESKEKL 583 (1047)
Q Consensus 557 ~~~~e~~~L~~~l~~le~~l~~~~~~l 583 (1047)
++..+...|+.+++.+...++.....+
T Consensus 333 ~ke~~~~~Lqsdve~Lr~rle~k~~~l 359 (775)
T PF10174_consen 333 AKEQEAEMLQSDVEALRFRLEEKNSQL 359 (775)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344555556666666665555554443
No 128
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=94.45 E-value=6.7 Score=40.18 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001598 653 ALEAESKIVQLKTAMHRLEEKVSDMET 679 (1047)
Q Consensus 653 l~~~e~~l~~l~~~~~~Le~~l~~Le~ 679 (1047)
.+.++..+..|+.+..+|+..+.....
T Consensus 160 AE~aERsVakLeke~DdlE~kl~~~k~ 186 (205)
T KOG1003|consen 160 AEFAERRVAKLEKERDDLEEKLEEAKE 186 (205)
T ss_pred HHHHHHHHHHHcccHHHHHHhhHHHHH
Confidence 333333333444444444443333333
No 129
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.40 E-value=0.36 Score=49.60 Aligned_cols=65 Identities=28% Similarity=0.285 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 622 KTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 622 ~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
+..+++++++++++.++..++.+++++++.++++.++.++.++.++..|++..+.+..+...|+.
T Consensus 134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~ 198 (290)
T COG4026 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKK 198 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 33344444444444444444444444444444444444444444444455444444444444444
No 130
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.34 E-value=6.7 Score=48.09 Aligned_cols=17 Identities=47% Similarity=0.811 Sum_probs=10.7
Q ss_pred eeccceEEeccchhhhcch
Q 001598 188 HYAGDVTYQTELFLDKNKD 206 (1047)
Q Consensus 188 Hyag~V~Y~~~~fl~kN~d 206 (1047)
+|.|++-|+ .||=-|-.
T Consensus 79 Gy~~digyq--~fLYp~e~ 95 (594)
T PF05667_consen 79 GYRGDIGYQ--TFLYPNEK 95 (594)
T ss_pred CCCCCCcch--hhccCChH
Confidence 478888886 46544443
No 131
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.33 E-value=7.8 Score=47.13 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLE 629 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~ 629 (1047)
...+..|+.++..++.+++...
T Consensus 336 ~~~v~~L~~eL~~~r~eLea~~ 357 (522)
T PF05701_consen 336 SSEVSSLEAELNKTRSELEAAK 357 (522)
T ss_pred HhHHhhHHHHHHHHHHHHHHHH
Confidence 3344555555555555554443
No 132
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.27 E-value=9.6 Score=46.03 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 001598 644 KISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1047)
Q Consensus 644 ~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~~ 689 (1047)
-+.....+++.-++.++..+...+..-...+..|+.+++.|+++..
T Consensus 580 ~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~ 625 (786)
T PF05483_consen 580 CEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKIT 625 (786)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344445555666777777777777777777778888888887664
No 133
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.24 E-value=31 Score=47.07 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001598 642 TSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1047)
Q Consensus 642 l~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~ 685 (1047)
++...+....++.+.+.++.+++.++..++..++.++++...+.
T Consensus 440 Le~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~ 483 (1486)
T PRK04863 440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVR 483 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555555554443
No 134
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.16 E-value=13 Score=44.67 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 001598 642 TSKISEERLKQALEAESKI----VQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1047)
Q Consensus 642 l~~~~~e~~~~l~~~e~~l----~~l~~~~~~Le~~l~~Le~E~~~L~qq~~ 689 (1047)
.+++...+..+++..+..+ ..+..++..|+.+++....+++.++.+..
T Consensus 290 kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~ 341 (629)
T KOG0963|consen 290 KDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLN 341 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444433332 34455566666666666666666666543
No 135
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.10 E-value=6.7 Score=46.54 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001598 520 ARETGALQAAKNKLEKQVE 538 (1047)
Q Consensus 520 a~~~~~l~~~~~~LE~kv~ 538 (1047)
+.++..++..+..|++++.
T Consensus 234 ~~~ie~l~~~n~~l~e~i~ 252 (581)
T KOG0995|consen 234 ANEIEDLKKTNRELEEMIN 252 (581)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555
No 136
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.09 E-value=13 Score=41.92 Aligned_cols=75 Identities=21% Similarity=0.283 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~ 682 (1047)
...++..+++....+........++....+++.....+.....+.+.+-++++..++.....|+.++..|+.--.
T Consensus 209 ~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ 283 (499)
T COG4372 209 ANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQ 283 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777777777777777777777777777777777888888888888888888776553
No 137
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=94.08 E-value=11 Score=41.44 Aligned_cols=79 Identities=24% Similarity=0.289 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHh
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA-----------ESKIVQLKTAMHRLEEKVSD 676 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~-----------e~~l~~l~~~~~~Le~~l~~ 676 (1047)
+.-+..+..|+..|+-+++++.....|.+++..++-+|..|...-...+ .+-++.-+..+..|+.++.+
T Consensus 133 E~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqD 212 (401)
T PF06785_consen 133 EGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQD 212 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666666666666555555555433322221 22344556777777888888
Q ss_pred HHHHHHHHHH
Q 001598 677 METENQILRQ 686 (1047)
Q Consensus 677 Le~E~~~L~q 686 (1047)
|--|+..|-|
T Consensus 213 Lm~EirnLLQ 222 (401)
T PF06785_consen 213 LMYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHHH
Confidence 7777776665
No 138
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.07 E-value=34 Score=46.79 Aligned_cols=12 Identities=17% Similarity=0.185 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 001598 950 SIIDSLNTLLST 961 (1047)
Q Consensus 950 ~il~~L~~~~~~ 961 (1047)
.+-.+...+..+
T Consensus 1240 ~~~~l~~~l~~~ 1251 (1311)
T TIGR00606 1240 NIESLAHALVEI 1251 (1311)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 139
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=93.99 E-value=10 Score=40.60 Aligned_cols=75 Identities=16% Similarity=0.279 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHh
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI-----------VQLKTAMHRLEEKVSD 676 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l-----------~~l~~~~~~Le~~l~~ 676 (1047)
......+..+...++..++.++..+.+++.++.+++.....+..+...++... ......+.++++++..
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~ 177 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDE 177 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Confidence 55666777777777777777777777777777777776666666655444421 2344555666666666
Q ss_pred HHHHHH
Q 001598 677 METENQ 682 (1047)
Q Consensus 677 Le~E~~ 682 (1047)
++.+.+
T Consensus 178 ~ea~ae 183 (219)
T TIGR02977 178 LEAQAE 183 (219)
T ss_pred HHHHHH
Confidence 665544
No 140
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.93 E-value=5 Score=43.02 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 658 SKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 658 ~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
.++++|++....-=++-++|+.|+..|+-+
T Consensus 162 sk~e~L~ekynkeveerkrle~e~k~lq~k 191 (307)
T PF10481_consen 162 SKYEELQEKYNKEVEERKRLEAEVKALQAK 191 (307)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 455566666666666677888888888753
No 141
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.92 E-value=6.4 Score=50.50 Aligned_cols=37 Identities=8% Similarity=0.188 Sum_probs=21.5
Q ss_pred CCcEEEeeccceEEeccchhhhc-----chhhHHHHHHHHhh
Q 001598 182 SDFTICHYAGDVTYQTELFLDKN-----KDYVVAEHQALLSA 218 (1047)
Q Consensus 182 ~~F~i~Hyag~V~Y~~~~fl~kN-----~d~~~~~~~~ll~~ 218 (1047)
++..+.-|+..+.-+.+|-+.-+ .|+++|+++..+..
T Consensus 212 GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~ 253 (1317)
T KOG0612|consen 212 GHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGD 253 (1317)
T ss_pred CcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcC
Confidence 34445455444555555555444 47888887765553
No 142
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.90 E-value=11 Score=43.10 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001598 561 ENAKLQSALQEMQLQFK 577 (1047)
Q Consensus 561 e~~~L~~~l~~le~~l~ 577 (1047)
+++.++..++.++.+..
T Consensus 298 e~Enlqmr~qqleeent 314 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENT 314 (502)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 143
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.89 E-value=12 Score=40.80 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 557 AKTQENAKLQSALQEMQLQFKESKEKL 583 (1047)
Q Consensus 557 ~~~~e~~~L~~~l~~le~~l~~~~~~l 583 (1047)
....+.++++.+|.+++..+.+-++.+
T Consensus 77 ~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 77 QSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444677778888888888777766655
No 144
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=93.86 E-value=13 Score=42.99 Aligned_cols=10 Identities=20% Similarity=0.215 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 001598 644 KISEERLKQA 653 (1047)
Q Consensus 644 ~~~~e~~~~l 653 (1047)
++++..+.+.
T Consensus 485 rEKe~~Eqef 494 (527)
T PF15066_consen 485 REKETREQEF 494 (527)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 145
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=93.84 E-value=10 Score=40.13 Aligned_cols=83 Identities=22% Similarity=0.234 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001598 607 DHAVVEELTSENEKLKTL-----VSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1047)
Q Consensus 607 ~~~~~~~L~~e~~~L~~~-----l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~ 681 (1047)
.-+++..|..|+.+|-.+ +.+|+.++.=.+...++++..-+++-.-++++.+.++..++.+--|+++++..++++
T Consensus 215 LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~I 294 (330)
T KOG2991|consen 215 LMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEI 294 (330)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 456677777777776443 666666666666777788888888888888889999999999999999999999999
Q ss_pred HHHHHhcc
Q 001598 682 QILRQQSL 689 (1047)
Q Consensus 682 ~~L~qq~~ 689 (1047)
+.|.+-..
T Consensus 295 q~l~k~~~ 302 (330)
T KOG2991|consen 295 QRLKKGLE 302 (330)
T ss_pred HHHHHHHH
Confidence 88877443
No 146
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=93.76 E-value=3.7 Score=42.79 Aligned_cols=20 Identities=25% Similarity=0.657 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 001598 659 KIVQLKTAMHRLEEKVSDME 678 (1047)
Q Consensus 659 ~l~~l~~~~~~Le~~l~~Le 678 (1047)
.+.++++....+.+.+.+++
T Consensus 166 ~~~~~~~~~~~l~~~~~~~~ 185 (191)
T PF04156_consen 166 QLERLQENLQQLEEKIQELQ 185 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444333
No 147
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.58 E-value=11 Score=47.52 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 614 LTSENEKLKTLVSSLEKKIDETEKKFEE 641 (1047)
Q Consensus 614 L~~e~~~L~~~l~~l~~~l~ele~~~~e 641 (1047)
+.+|++.++.++..+...+++++.+.+.
T Consensus 637 ~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 637 FKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555544444433
No 148
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.57 E-value=8.1 Score=37.98 Aligned_cols=14 Identities=43% Similarity=0.608 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 001598 531 NKLEKQVEELTWRL 544 (1047)
Q Consensus 531 ~~LE~kv~el~~~l 544 (1047)
..|+.++..|...|
T Consensus 20 dsle~~v~~LEreL 33 (140)
T PF10473_consen 20 DSLEDHVESLEREL 33 (140)
T ss_pred hhHHHHHHHHHHHH
Confidence 33444444444333
No 149
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.51 E-value=12 Score=44.17 Aligned_cols=24 Identities=4% Similarity=0.207 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 663 LKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 663 l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
...++..++.++..++.++..++.
T Consensus 244 ~~~~l~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 244 VLEELTEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555444
No 150
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.47 E-value=11 Score=46.62 Aligned_cols=59 Identities=27% Similarity=0.322 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHR 669 (1047)
Q Consensus 611 ~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~ 669 (1047)
...+..++..++..+..+...+.+......+++.+.+++.+++.+.+....++.+.+..
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~ 408 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQG 408 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444333333333344444444443333333333333333
No 151
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=93.37 E-value=8.1 Score=41.33 Aligned_cols=77 Identities=25% Similarity=0.361 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH---------HHHHHHHHHHHHHHHh
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE--AESKI---------VQLKTAMHRLEEKVSD 676 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~--~e~~l---------~~l~~~~~~Le~~l~~ 676 (1047)
+..+..+......+...++.++..+.+++.++.+++.....+...... ++.++ ......+.++++++..
T Consensus 97 e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~ 176 (221)
T PF04012_consen 97 EEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEE 176 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555555544444322 22222 2344555666666666
Q ss_pred HHHHHHHH
Q 001598 677 METENQIL 684 (1047)
Q Consensus 677 Le~E~~~L 684 (1047)
++.+....
T Consensus 177 ~ea~a~a~ 184 (221)
T PF04012_consen 177 MEARAEAS 184 (221)
T ss_pred HHHHHHHH
Confidence 65555443
No 152
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=93.34 E-value=13 Score=50.79 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001598 655 EAESKIVQLKTAMHRLEEK 673 (1047)
Q Consensus 655 ~~e~~l~~l~~~~~~Le~~ 673 (1047)
+.+..+++.+....+.+..
T Consensus 365 ~~~~~~~~~~~r~~~~~~~ 383 (1353)
T TIGR02680 365 EERRRLDEEAGRLDDAERE 383 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 153
>PRK10698 phage shock protein PspA; Provisional
Probab=93.33 E-value=13 Score=39.74 Aligned_cols=123 Identities=18% Similarity=0.216 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 559 TQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKK 638 (1047)
Q Consensus 559 ~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~ 638 (1047)
....+.++.++.+.+.....|.......+.+-...+... .+. .-.....++..|..+....+..++.++..+..++.+
T Consensus 51 ~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~-AL~-~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~k 128 (222)
T PRK10698 51 LAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARA-ALI-EKQKLTDLIATLEHEVTLVDETLARMKKEIGELENK 128 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666544322111110000000 000 000124456666777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--H---------HHHHHHHHHHHHHHhHHHHHHH
Q 001598 639 FEETSKISEERLKQALEAESKI--V---------QLKTAMHRLEEKVSDMETENQI 683 (1047)
Q Consensus 639 ~~el~~~~~e~~~~l~~~e~~l--~---------~l~~~~~~Le~~l~~Le~E~~~ 683 (1047)
+.+++.....+..+...++.+. . ..-....+++++|..++.+-+.
T Consensus 129 i~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea 184 (222)
T PRK10698 129 LSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAES 184 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhH
Confidence 7777766666666654443322 1 2334555677777777666554
No 154
>PRK01156 chromosome segregation protein; Provisional
Probab=93.22 E-value=17 Score=47.58 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001598 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1047)
Q Consensus 649 ~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~ 683 (1047)
+..++..+...+..++..+..+++++..+++++..
T Consensus 686 l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~ 720 (895)
T PRK01156 686 SRKALDDAKANRARLESTIEILRTRINELSDRIND 720 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33333333334444444444444444444444433
No 155
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.02 E-value=6.7 Score=44.61 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 659 KIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 659 ~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
.+.+.+++....++-+..|..++..++.
T Consensus 361 ~Lrrfq~ekeatqELieelrkelehlr~ 388 (502)
T KOG0982|consen 361 ILRRFQEEKEATQELIEELRKELEHLRR 388 (502)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666667777666654
No 156
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.92 E-value=1.4 Score=46.49 Aligned_cols=76 Identities=11% Similarity=0.119 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
..++..++.++++++.++++.....+ ....+++.......+.+.+++++..+|.+++..++.++..++.+++.++.
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666665555544332 22233333333333333444444444455555555555555555544443
No 157
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.85 E-value=22 Score=45.01 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 521 RETGALQAAKNKLEKQVEELTWRLQ 545 (1047)
Q Consensus 521 ~~~~~l~~~~~~LE~kv~el~~~l~ 545 (1047)
+.+.+|+.....+++.|+.+..+..
T Consensus 202 ~~l~~L~~~~~~l~kdVE~~rer~~ 226 (1072)
T KOG0979|consen 202 EKLNRLEDEIDKLEKDVERVRERER 226 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666665554443
No 158
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.79 E-value=31 Score=42.55 Aligned_cols=33 Identities=9% Similarity=0.208 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001598 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1047)
Q Consensus 651 ~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~ 683 (1047)
.+++++.++++.++++...+.+.+..|+.+-..
T Consensus 383 e~leel~e~leeie~eq~ei~e~l~~Lrk~E~e 415 (569)
T PRK04778 383 EELEEILKQLEEIEKEQEKLSEMLQGLRKDELE 415 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433
No 159
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.61 E-value=33 Score=42.41 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=10.0
Q ss_pred ccccHHHHHHHHHHHH
Q 001598 944 ASSHWQSIIDSLNTLL 959 (1047)
Q Consensus 944 ~~~~~~~il~~L~~~~ 959 (1047)
..++...|+..|..+-
T Consensus 571 dnpTAqqImqLL~eiQ 586 (617)
T PF15070_consen 571 DNPTAQQIMQLLQEIQ 586 (617)
T ss_pred CCchHHHHHHHhHhcC
Confidence 3556677777776553
No 160
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=92.60 E-value=19 Score=39.54 Aligned_cols=113 Identities=22% Similarity=0.218 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 561 ENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFE 640 (1047)
Q Consensus 561 e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~ 640 (1047)
-.+.++..+..-+.++.+++.....+..+..+-..... ..++++..+..++--|++++++...+....++...
T Consensus 180 ~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqe-------s~eERL~QlqsEN~LLrQQLddA~~K~~~kek~Vi 252 (305)
T PF14915_consen 180 ALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQE-------SLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVI 252 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666666665554444333333222111 13678899999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhHHHH
Q 001598 641 ETSKISEERLKQALE--------AESKIVQLKTAMHRLEEKVSDMETE 680 (1047)
Q Consensus 641 el~~~~~e~~~~l~~--------~e~~l~~l~~~~~~Le~~l~~Le~E 680 (1047)
.++....+....|.. ++++-.+|-.+...|++.+-..+.|
T Consensus 253 niQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qyEkE 300 (305)
T PF14915_consen 253 NIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQYEKE 300 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 888877666666533 3333334444444444444444443
No 161
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.52 E-value=15 Score=38.34 Aligned_cols=31 Identities=45% Similarity=0.579 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISE 647 (1047)
Q Consensus 617 e~~~L~~~l~~l~~~l~ele~~~~el~~~~~ 647 (1047)
+..+|...++.++.++++.++++..+++..+
T Consensus 119 eReeL~~kL~~~~~~l~~~~~ki~~Lek~le 149 (194)
T PF15619_consen 119 EREELQRKLSQLEQKLQEKEKKIQELEKQLE 149 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666655443
No 162
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.43 E-value=2 Score=48.50 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 652 ~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
.....+..+.+++++...++.++.....+++.|++
T Consensus 100 ~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 100 EYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444555566666666666666666666665
No 163
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=92.38 E-value=17 Score=38.40 Aligned_cols=75 Identities=21% Similarity=0.285 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 612 EELTSENEKLKTLVSSLEKKIDE-TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 612 ~~L~~e~~~L~~~l~~l~~~l~e-le~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
......+...++.+..++....+ ++....++.........++..++..+...+-.+.+|+..+.....||+.|-.
T Consensus 121 ~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtk 196 (207)
T PF05010_consen 121 EEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTK 196 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433332 4444455555555566666777778888888888888888888888877754
No 164
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.30 E-value=2 Score=48.55 Aligned_cols=81 Identities=21% Similarity=0.225 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 001598 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1047)
Q Consensus 610 ~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~~ 689 (1047)
+++.++.+...+.+++.+++...+++.+++.+++.+..++..+-...-.....++-++.+++++...++........+..
T Consensus 51 el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 51 ELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444333344444455555566666666666666665555544
Q ss_pred c
Q 001598 690 L 690 (1047)
Q Consensus 690 ~ 690 (1047)
.
T Consensus 131 ~ 131 (314)
T PF04111_consen 131 R 131 (314)
T ss_dssp C
T ss_pred H
Confidence 3
No 165
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=92.13 E-value=25 Score=39.93 Aligned_cols=10 Identities=40% Similarity=0.388 Sum_probs=5.8
Q ss_pred hhHHHHHHHH
Q 001598 472 RASILIQSHC 481 (1047)
Q Consensus 472 ~aa~~IQ~~~ 481 (1047)
.|.+.||+.+
T Consensus 85 ~Asv~IQara 94 (552)
T KOG2129|consen 85 LASVEIQARA 94 (552)
T ss_pred hhhhHHhhcc
Confidence 3666677543
No 166
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.07 E-value=13 Score=46.71 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 648 ERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 648 e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
.+..++.++..+-..+=.+-..|+..+..+++++..-++.
T Consensus 457 ~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~ 496 (1200)
T KOG0964|consen 457 ELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKN 496 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444455666666666666554443
No 167
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=92.05 E-value=24 Score=39.58 Aligned_cols=79 Identities=18% Similarity=0.165 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHH
Q 001598 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAES-------KIVQLKTAMHRLEEKVSDMETENQI 683 (1047)
Q Consensus 611 ~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~-------~l~~l~~~~~~Le~~l~~Le~E~~~ 683 (1047)
++.+..+...|+..+..+....+++..+....+...+.+..++.-+=. .++.|-.++.-|.+++..+++|...
T Consensus 135 LEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l 214 (319)
T PF09789_consen 135 LEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKEL 214 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444322111 3667778888899999999999988
Q ss_pred HHHhcc
Q 001598 684 LRQQSL 689 (1047)
Q Consensus 684 L~qq~~ 689 (1047)
+++...
T Consensus 215 ~k~~i~ 220 (319)
T PF09789_consen 215 LKQTIN 220 (319)
T ss_pred HHHHHH
Confidence 877543
No 168
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.01 E-value=20 Score=44.97 Aligned_cols=79 Identities=18% Similarity=0.259 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 610 VVEELTSENEKLKTLVSSLEKKIDE--TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 610 ~~~~L~~e~~~L~~~l~~l~~~l~e--le~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
.+..+..++.+++.+++++..++.. -+..+.++.+++++...++..++.++..++.++..++.++..++.++..+..+
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 471 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQ 471 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666653 23455666677777777777777777777777777777777777777665543
Q ss_pred c
Q 001598 688 S 688 (1047)
Q Consensus 688 ~ 688 (1047)
.
T Consensus 472 ~ 472 (650)
T TIGR03185 472 K 472 (650)
T ss_pred H
Confidence 3
No 169
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=91.98 E-value=14 Score=38.04 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001598 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1047)
Q Consensus 612 ~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~ 688 (1047)
++=+.++.+|+..+...-..+...++++..+..+...+..++.+.+..+..+.+++...+.+...+...+..|+++.
T Consensus 59 eERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~ 135 (177)
T PF13870_consen 59 EERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQG 135 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334444444444444444444555555555555556666666666666666666666666666666666666544
No 170
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.91 E-value=26 Score=39.58 Aligned_cols=61 Identities=23% Similarity=0.284 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHH
Q 001598 619 EKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQ----LKTAMHRLEEKVSDMET 679 (1047)
Q Consensus 619 ~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~----l~~~~~~Le~~l~~Le~ 679 (1047)
......+++++.++.+++..+++....+.++..++.+++..+++ -..++..|+.++..|+.
T Consensus 221 ~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 221 MIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444444444444333321 13344444444444443
No 171
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.89 E-value=6.4 Score=47.00 Aligned_cols=79 Identities=22% Similarity=0.388 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEE---RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e---~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L 684 (1047)
..+++.|+.++..|+..+++++..++.++.+++.++++.+. ...++...+..+..|+.++.+-...++.|+.++..+
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666655554432 222345566667777777777777777777777766
Q ss_pred HH
Q 001598 685 RQ 686 (1047)
Q Consensus 685 ~q 686 (1047)
++
T Consensus 508 ~k 509 (652)
T COG2433 508 RK 509 (652)
T ss_pred HH
Confidence 64
No 172
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=91.72 E-value=23 Score=44.13 Aligned_cols=74 Identities=20% Similarity=0.171 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHH
Q 001598 610 VVEELTSENEKLKTLVSSLEKKI---DETEKKFEETSKISEERLKQALEA-------ESKIVQLKTAMHRLEEKVSDMET 679 (1047)
Q Consensus 610 ~~~~L~~e~~~L~~~l~~l~~~l---~ele~~~~el~~~~~e~~~~l~~~-------e~~l~~l~~~~~~Le~~l~~Le~ 679 (1047)
...+|+.|+-.|+.++..++..= +.++-++..++.+.+-+..+++++ +.++++.-+.++.-+++-..|+.
T Consensus 98 dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~Lrk 177 (717)
T PF09730_consen 98 DYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRK 177 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666554432 234444444444444444444443 33333333333344444444555
Q ss_pred HHHH
Q 001598 680 ENQI 683 (1047)
Q Consensus 680 E~~~ 683 (1047)
|+..
T Consensus 178 EL~~ 181 (717)
T PF09730_consen 178 ELDQ 181 (717)
T ss_pred HHHH
Confidence 5544
No 173
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=91.65 E-value=2.7 Score=35.98 Aligned_cols=66 Identities=21% Similarity=0.229 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001598 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1047)
Q Consensus 613 ~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~ 685 (1047)
.|+.++..|+..++.+..++.-.+.....+..+.+.....+..+-..+ .+|.+++..|+.|++..+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~-------~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEEN-------NKLKEENEALRKELEELR 67 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Confidence 356666777777777777776666666666666665555555544444 444444555555554443
No 174
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.65 E-value=15 Score=43.25 Aligned_cols=70 Identities=13% Similarity=0.200 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001598 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ-ALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1047)
Q Consensus 614 L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~-l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~ 683 (1047)
...+...++.++.+++..+.+++.++.+++......... ..+....+..++.++..++.++..++..++.
T Consensus 201 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 201 LERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444444444444444444443333332222 2344455666777777777777776666553
No 175
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.64 E-value=5.4 Score=45.73 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHhHHH
Q 001598 662 QLKTAMHRLEEKVSDMET 679 (1047)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~ 679 (1047)
..++++.+|++++..|-.
T Consensus 432 s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 432 SKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHhHhe
Confidence 334444444444444433
No 176
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=91.53 E-value=2.1 Score=36.67 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 661 VQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 661 ~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
+.....+...-..+.+|++|++.|+++
T Consensus 36 d~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 36 DSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555666666655554
No 177
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=91.39 E-value=4.1 Score=45.42 Aligned_cols=71 Identities=17% Similarity=0.262 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001598 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1047)
Q Consensus 611 ~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~ 681 (1047)
...|..++..|.-+++-|+.++++++..+..++++.++...+++.....++.++.++..|+++|....+-+
T Consensus 100 naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli 170 (302)
T PF09738_consen 100 NAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELI 170 (302)
T ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577888889999999999999999999999999988888888878788888888888888776555444
No 178
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.34 E-value=15 Score=40.98 Aligned_cols=71 Identities=10% Similarity=0.240 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001598 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1047)
Q Consensus 613 ~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~ 683 (1047)
.+...+..++..+++.++++.+++..+...+..........+...+.+.++..++...+..+..++..+..
T Consensus 74 ~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 144 (302)
T PF10186_consen 74 RLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLAR 144 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444433333333333332222222233333334444444444444444444443
No 179
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=91.33 E-value=33 Score=39.70 Aligned_cols=11 Identities=27% Similarity=0.289 Sum_probs=5.6
Q ss_pred HHHHHHHhhhh
Q 001598 313 DEFVDRFGILA 323 (1047)
Q Consensus 313 ~~F~~ry~~l~ 323 (1047)
.+|..-|+.|.
T Consensus 137 k~F~~IFK~LY 147 (622)
T COG5185 137 KGFIIIFKWLY 147 (622)
T ss_pred ccHHHHHHHHH
Confidence 45555555443
No 180
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=91.33 E-value=22 Score=44.90 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~ 682 (1047)
+.++.++.+++.++..+...+-..+.+-.+.+.++.+.+.....++..+..+++..+.++..|+-++..+.+|++
T Consensus 91 e~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 91 EAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555666666666666666666666776677777777777776666664
No 181
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.23 E-value=55 Score=42.10 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001598 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1047)
Q Consensus 611 ~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~ 681 (1047)
+.+.+.+....+..+...-+.+.+++...++++.+......+.+.+++.......+..+.+..++.|++..
T Consensus 1600 l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~ 1670 (1758)
T KOG0994|consen 1600 LAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYY 1670 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444444444444444444444444333
No 182
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.23 E-value=8.9 Score=39.96 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 001598 561 ENAKLQSALQEMQLQF 576 (1047)
Q Consensus 561 e~~~L~~~l~~le~~l 576 (1047)
|...+++.+.+++..+
T Consensus 96 el~~l~~~~~~~~~~l 111 (191)
T PF04156_consen 96 ELDQLQERIQELESEL 111 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 183
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=91.18 E-value=5.7 Score=46.15 Aligned_cols=73 Identities=18% Similarity=0.110 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001598 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1047)
Q Consensus 612 ~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L 684 (1047)
+...+++...++++..|...+.++++++..+.-+++++..-|......-.+++.+..+++++-..+....++.
T Consensus 222 ~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~Ea 294 (596)
T KOG4360|consen 222 QSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEA 294 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555555555555444444444444444444444555555555444444444433
No 184
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=91.12 E-value=11 Score=46.08 Aligned_cols=40 Identities=15% Similarity=0.088 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA 653 (1047)
Q Consensus 614 L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l 653 (1047)
.+.|..+++-++++...+++.++-++++.++|+.-+--.+
T Consensus 492 ~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itl 531 (861)
T PF15254_consen 492 FDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITL 531 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHH
Confidence 3344444444444444444444444444444444333333
No 185
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=91.05 E-value=21 Score=41.37 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 522 ETGALQAAKNKLEKQVEELTWRLQ 545 (1047)
Q Consensus 522 ~~~~l~~~~~~LE~kv~el~~~l~ 545 (1047)
.+..|+-.+.-||++|++|+-...
T Consensus 332 ~IqdLq~sN~yLe~kvkeLQ~k~~ 355 (527)
T PF15066_consen 332 RIQDLQCSNLYLEKKVKELQMKIT 355 (527)
T ss_pred HHHHhhhccHHHHHHHHHHHHHhh
Confidence 445566666678888888886554
No 186
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=90.99 E-value=30 Score=38.51 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=13.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHhc
Q 001598 667 MHRLEEKVSDMETENQILRQQS 688 (1047)
Q Consensus 667 ~~~Le~~l~~Le~E~~~L~qq~ 688 (1047)
+..|..++..|..+...|+.+.
T Consensus 180 vN~L~Kqm~~l~~eKr~Lq~~l 201 (310)
T PF09755_consen 180 VNRLWKQMDKLEAEKRRLQEKL 201 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666766666654
No 187
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=90.92 E-value=30 Score=38.46 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHH
Q 001598 624 LVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI-VQLKTAMHRLEEKVSDMETENQ 682 (1047)
Q Consensus 624 ~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l-~~l~~~~~~Le~~l~~Le~E~~ 682 (1047)
.+..++.+.......+..+.+++-+++..|+..++-+ ..|...+..|...-..|+..++
T Consensus 143 ~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 143 KIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333333333333344444445555555554444433 3555555555555555555543
No 188
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=90.77 E-value=45 Score=40.27 Aligned_cols=80 Identities=20% Similarity=0.258 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001598 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ----ALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1047)
Q Consensus 610 ~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~----l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~ 685 (1047)
+...|..+...+..++..+++++..++..+.....+..++... +-.....+.-.-.++...+..+..++.|++.|+
T Consensus 183 ~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~ 262 (629)
T KOG0963|consen 183 REAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLR 262 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555444444444433333333 112222233334444455555555666666665
Q ss_pred Hhcc
Q 001598 686 QQSL 689 (1047)
Q Consensus 686 qq~~ 689 (1047)
.|..
T Consensus 263 ~ql~ 266 (629)
T KOG0963|consen 263 EQLA 266 (629)
T ss_pred HHHH
Confidence 5543
No 189
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=90.69 E-value=0.073 Score=68.19 Aligned_cols=76 Identities=22% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 612 ~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
..+++++..++.+++++...++.+.+...+.++....++.++.++..++++.+..+..+.....+|+.|+..|..+
T Consensus 148 ~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~q 223 (859)
T PF01576_consen 148 AKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQ 223 (859)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666666666666666666666666666666666666666666666666666666666555443
No 190
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=90.63 E-value=27 Score=43.54 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 522 ETGALQAAKNKLEKQVEELTWRLQ 545 (1047)
Q Consensus 522 ~~~~l~~~~~~LE~kv~el~~~l~ 545 (1047)
++.+|+.+..++|.+...|...|+
T Consensus 266 EiqKL~qQL~qve~EK~~L~~~L~ 289 (717)
T PF09730_consen 266 EIQKLKQQLLQVEREKSSLLSNLQ 289 (717)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 445555555555555555555554
No 191
>PLN02939 transferase, transferring glycosyl groups
Probab=90.60 E-value=24 Score=45.42 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 521 RETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEK 582 (1047)
Q Consensus 521 ~~~~~l~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~ 582 (1047)
.++..+++.+.-|.+.+.-+...+..-.+- .+.-.....|..-|...+.+|+.++...++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (977)
T PLN02939 226 KELDVLKEENMLLKDDIQFLKAELIEVAET-EERVFKLEKERSLLDASLRELESKFIVAQED 286 (977)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 455556666666666555555544421110 0000133355666677777777776665544
No 192
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.52 E-value=31 Score=41.78 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 001598 609 AVVEELTSENEKLKT 623 (1047)
Q Consensus 609 ~~~~~L~~e~~~L~~ 623 (1047)
.++.+++.++..+..
T Consensus 254 ~~l~~l~~~l~~l~~ 268 (498)
T TIGR03007 254 GRIEALEKQLDALRL 268 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 193
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.39 E-value=23 Score=39.53 Aligned_cols=15 Identities=13% Similarity=0.361 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHh
Q 001598 662 QLKTAMHRLEEKVSD 676 (1047)
Q Consensus 662 ~l~~~~~~Le~~l~~ 676 (1047)
..+..+..+...+..
T Consensus 130 ~~~~~l~~l~~~l~~ 144 (302)
T PF10186_consen 130 ERKQRLSQLQSQLAR 144 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333443333
No 194
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=90.31 E-value=4.5 Score=33.68 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001598 655 EAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1047)
Q Consensus 655 ~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~ 685 (1047)
.++.++.+.+.....|..+|..|+++++.++
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444445555555554443
No 195
>PRK01156 chromosome segregation protein; Provisional
Probab=90.26 E-value=72 Score=41.79 Aligned_cols=62 Identities=18% Similarity=0.261 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHhhhh--------------------cCCCCCCchhhHHhh
Q 001598 949 QSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLL--------------------RRECCTFSNGEYVKA 1008 (1047)
Q Consensus 949 ~~il~~L~~~~~~l~~~~v~~~l~~Q~f~qlf~fin~~lfN~Ll~--------------------r~~~cs~s~g~qIr~ 1008 (1047)
...+..|+.+...+...+++..+... -.+.|.-.....|..+=+ ..+....|.|.+.+.
T Consensus 732 ~~~~~~l~~~r~~l~k~~~~~~I~~~-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~ 810 (895)
T PRK01156 732 KKAIGDLKRLREAFDKSGVPAMIRKS-ASQAMTSLTRKYLFEFNLDFDDIDVDQDFNITVSRGGMVEGIDSLSGGEKTAV 810 (895)
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHH-HHHHHHHHHHHHHHHhCCCccceeecCCeeEEEEeCCccCccccCCHhHHHHH
Confidence 34566677777778877777644322 222222111111111111 135778999999998
Q ss_pred chh
Q 001598 1009 GLA 1011 (1047)
Q Consensus 1009 nls 1011 (1047)
.|.
T Consensus 811 ~la 813 (895)
T PRK01156 811 AFA 813 (895)
T ss_pred HHH
Confidence 876
No 196
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.26 E-value=36 Score=43.60 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=6.7
Q ss_pred hhHHHHHHHHHHHHH
Q 001598 472 RASILIQSHCRKYLA 486 (1047)
Q Consensus 472 ~aa~~IQ~~~R~~~~ 486 (1047)
.|+.+.-.....|..
T Consensus 168 ~Aa~iaN~la~~Y~~ 182 (754)
T TIGR01005 168 LAAAIPDAIAAAYIA 182 (754)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 197
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=90.17 E-value=2.4 Score=44.45 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 001598 639 FEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1047)
Q Consensus 639 ~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~~ 689 (1047)
...++.+.++..++++.++++.+.++.+.+.+..+-.+|-+|...|+.|..
T Consensus 160 ~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 160 LEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 333344444444445555555555555555555555666666666665543
No 198
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.15 E-value=5.1 Score=47.80 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=8.1
Q ss_pred HHHHhhcCcccchhcch
Q 001598 131 ILDLIEKKPGGIIALLD 147 (1047)
Q Consensus 131 ~ldli~~~~~Gil~lLd 147 (1047)
+.+|..++. +|+.+|-
T Consensus 59 vyEL~~~~~-~li~il~ 74 (652)
T COG2433 59 VYELGADKR-DLIRILK 74 (652)
T ss_pred HHHHhcChh-HHHHHHH
Confidence 455555443 5555554
No 199
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.10 E-value=42 Score=38.81 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 001598 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA--LEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1047)
Q Consensus 617 e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l--~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~~ 689 (1047)
.+.++++.+...-++++.-+.....+..+++.+-..+ ......+.+...++...+..|-+..+|-+.|+++..
T Consensus 346 ~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~n 420 (521)
T KOG1937|consen 346 RIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQEN 420 (521)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455554444444433334444444444333322 233445566677777777777777777778877654
No 200
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=90.08 E-value=8.8 Score=36.45 Aligned_cols=76 Identities=20% Similarity=0.310 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEE---------------TSKISEERLKQALEAESKIVQLKTAMHRLEEKV 674 (1047)
Q Consensus 610 ~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~e---------------l~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l 674 (1047)
+++.+-.++..++.++.+.++.++++++--.+ ..+...++.++++.++.+++.++.....+++++
T Consensus 21 ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l 100 (119)
T COG1382 21 QLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERL 100 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666666555554421111 123333444455556666666666666666666
Q ss_pred HhHHHHHHHHH
Q 001598 675 SDMETENQILR 685 (1047)
Q Consensus 675 ~~Le~E~~~L~ 685 (1047)
+.|++++..+-
T Consensus 101 ~eLq~~i~~~l 111 (119)
T COG1382 101 EELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHh
Confidence 66666665443
No 201
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=90.02 E-value=74 Score=41.52 Aligned_cols=74 Identities=19% Similarity=0.311 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001598 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAES--KIVQLKTAMHRLEEKVSDMETENQIL 684 (1047)
Q Consensus 611 ~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~--~l~~l~~~~~~Le~~l~~Le~E~~~L 684 (1047)
..+....+..++..+..++..+.+...++..++....+..+...+.+. .-.+++.+++.+++++.....|.+.+
T Consensus 618 ~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 618 RTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555444444443333333333322222 22345555566666666666666555
No 202
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.01 E-value=4.2 Score=42.60 Aligned_cols=61 Identities=21% Similarity=0.188 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHR 669 (1047)
Q Consensus 609 ~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~ 669 (1047)
..+..+..++..|+..+.+++..+.+..+.+..+..+...+.-++..+++++..++.+...
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~ 176 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRE 176 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444443333333344444444333333
No 203
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=89.67 E-value=4.1 Score=42.17 Aligned_cols=70 Identities=21% Similarity=0.241 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001598 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMET 679 (1047)
Q Consensus 610 ~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~ 679 (1047)
+++++.+++..|-.++++++.+.++.+.++..++.++..+..+++.+..++.+|++...+|+..+...+.
T Consensus 143 kl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~ 212 (290)
T COG4026 143 KLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEE 212 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHH
Confidence 3444444444444444444444444444444444444444444444444444444444444444443333
No 204
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=89.65 E-value=62 Score=40.14 Aligned_cols=76 Identities=16% Similarity=0.240 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 612 ~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
..++.+...+......+.+++.-+...+....+...+....++.++..++..+..+.+++..+..+..+++.+.++
T Consensus 527 ~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k 602 (698)
T KOG0978|consen 527 GKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFK 602 (698)
T ss_pred HHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333344444444444444444555555555555555555555555555555444
No 205
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=89.64 E-value=57 Score=39.65 Aligned_cols=50 Identities=12% Similarity=0.144 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAE 657 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e 657 (1047)
.-+..-|++|...|.+.++....+..+.++++..++.+.+.++.+...++
T Consensus 703 ~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le 752 (961)
T KOG4673|consen 703 PIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLE 752 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666555555555555554444444333
No 206
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=89.59 E-value=60 Score=39.85 Aligned_cols=67 Identities=22% Similarity=0.255 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 620 KLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 620 ~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
.-+..+..+..+..++++.+.+++-......++|..++...+.|++.+....+.+...-.-++.|+.
T Consensus 159 aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~ 225 (739)
T PF07111_consen 159 AHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRK 225 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666555555666666666666666666555555555555555554
No 207
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=89.50 E-value=13 Score=39.80 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 662 QLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
..++.+..+.++...|+++++.++..
T Consensus 78 ~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 78 KRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555544
No 208
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=89.48 E-value=71 Score=40.53 Aligned_cols=82 Identities=21% Similarity=0.235 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH---HHHHHHHH--HHHHhHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE--AESKIVQL---KTAMHRLE--EKVSDMETE 680 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~--~e~~l~~l---~~~~~~Le--~~l~~Le~E 680 (1047)
...+.+|...+...+.++.++..+++..+++...|+-+..-+.++|+- .+..+..- -...+.|+ .+|.+|+.|
T Consensus 119 ~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaE 198 (769)
T PF05911_consen 119 EKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAE 198 (769)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788889999999999999999999999999999998888888743 23333211 11223333 578999999
Q ss_pred HHHHHHhcc
Q 001598 681 NQILRQQSL 689 (1047)
Q Consensus 681 ~~~L~qq~~ 689 (1047)
-..||-=..
T Consensus 199 C~rLr~l~r 207 (769)
T PF05911_consen 199 CQRLRALVR 207 (769)
T ss_pred HHHHHHHHh
Confidence 999886443
No 209
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=89.47 E-value=5.4 Score=47.29 Aligned_cols=21 Identities=14% Similarity=0.091 Sum_probs=14.6
Q ss_pred chhhHHhhchhHHHHHHhhhc
Q 001598 1001 SNGEYVKAGLAELELWCCQAK 1021 (1047)
Q Consensus 1001 s~g~qIr~nls~Le~W~~~~~ 1021 (1047)
+.-+-++.-=+++-+|+++.+
T Consensus 707 sed~Vv~WTnhrvmeWLrsiD 727 (861)
T KOG1899|consen 707 SEDVVVRWTNHRVMEWLRSID 727 (861)
T ss_pred ChhHHHHhhhHHHHHHHHhcc
Confidence 344456666688899999865
No 210
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=89.44 E-value=1e+02 Score=42.37 Aligned_cols=67 Identities=21% Similarity=0.292 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 525 ALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAK 591 (1047)
Q Consensus 525 ~l~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~ 591 (1047)
.|......|..+...++..+..-+-....++...+....++..++.+|+..+..+...+..+....+
T Consensus 763 rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r 829 (1822)
T KOG4674|consen 763 RLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLR 829 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555556555554444444455555566666777777777777777666555444443
No 211
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=89.43 E-value=13 Score=42.74 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE 655 (1047)
Q Consensus 614 L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~ 655 (1047)
...++.+.+..+.+....+.++..+++++..+++....++++
T Consensus 278 ~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 278 AQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444444433333
No 212
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.42 E-value=34 Score=43.21 Aligned_cols=70 Identities=19% Similarity=0.275 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001598 616 SENEKLKTLVSSLEKKIDE-------TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1047)
Q Consensus 616 ~e~~~L~~~l~~l~~~l~e-------le~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~ 685 (1047)
+++-+|+-.+.++..++.. ....+.+++....+...+|...+-+...+.++-..+...|..|+.+...|-
T Consensus 300 k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~ 376 (1200)
T KOG0964|consen 300 KKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLL 376 (1200)
T ss_pred HHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443 334445555555556666666666666777777777777777777665543
No 213
>PF13514 AAA_27: AAA domain
Probab=89.37 E-value=94 Score=41.81 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHH
Q 001598 35 SRDALAKIVYSRLFDWLVEKIN 56 (1047)
Q Consensus 35 ~rdalak~lY~~LF~wlV~~iN 56 (1047)
.-..+-+.+|..+|.+=...+.
T Consensus 80 ~Lgg~dr~~f~~iF~~d~~~L~ 101 (1111)
T PF13514_consen 80 LLGGLDRETFEAIFSFDHEELR 101 (1111)
T ss_pred HHcCCCHHHHHHHHcCCHHHHH
Confidence 3445556778888866555443
No 214
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=89.37 E-value=3.3 Score=46.75 Aligned_cols=104 Identities=18% Similarity=0.193 Sum_probs=73.9
Q ss_pred CCccccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHhhhhc-CCCCCCchhhHHhhchhHHHHHHhhh
Q 001598 942 DSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLR-RECCTFSNGEYVKAGLAELELWCCQA 1020 (1047)
Q Consensus 942 ~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~qlf~fin~~lfN~Ll~r-~~~cs~s~g~qIr~nls~Le~W~~~~ 1020 (1047)
+.++..+.+++.+|..++... ...+|+.+..-++...|.+|+..+.+-|+.. -+..+-.--.++...+..+|.++.+.
T Consensus 175 ~~ps~yi~dli~fL~~~f~s~-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~ 253 (311)
T PF04091_consen 175 GEPSDYINDLIQFLETTFSST-LTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDLDVKYLESFADSL 253 (311)
T ss_dssp -S--HHHHHHHHHHHHHHHTT-TTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHHHHHHHHHHHTT-
T ss_pred CCCCHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHHHHHHHHhC
Confidence 346677899999999998654 5679999999999999999999999998754 34445455578889999999999997
Q ss_pred cc--cccCCchHHhhhHHHHHhhhhccc
Q 001598 1021 KE--EYAGSSWDELKHIRQAVGFLVCHF 1046 (1047)
Q Consensus 1021 ~~--~~~~~~~~~L~~i~Qa~~lL~~~~ 1046 (1047)
.. .-.+.....|..++|.++||....
T Consensus 254 ~~~~~~~~~L~~~F~eLrQlvdLl~s~~ 281 (311)
T PF04091_consen 254 PVPGNNIPSLRETFAELRQLVDLLLSDD 281 (311)
T ss_dssp SSSS--SSTTGGGGHHHHHHHHHHH---
T ss_pred cCcccccccHHHHHHHHHHHHHHHhcCC
Confidence 10 124566789999999999997653
No 215
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=88.98 E-value=6.6 Score=32.73 Aligned_cols=44 Identities=14% Similarity=0.262 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001598 635 TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1047)
Q Consensus 635 le~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le 678 (1047)
+..++...+..+-..+.+|++++.+..+|..++..|+.+++.++
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444445555555555555555566666666555544
No 216
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=88.78 E-value=42 Score=36.97 Aligned_cols=46 Identities=26% Similarity=0.270 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccc
Q 001598 646 SEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLLS 691 (1047)
Q Consensus 646 ~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~~~~ 691 (1047)
..+.+......+.++...-..-..+++.+..++.|+--|+||....
T Consensus 195 ~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA 240 (305)
T PF14915_consen 195 IKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDA 240 (305)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444566666777777889999999999999999987543
No 217
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.78 E-value=80 Score=40.41 Aligned_cols=27 Identities=22% Similarity=0.195 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHH-HHHhcCCCHHHHHH
Q 001598 948 WQSIIDSLNTLLS-TLKQNFVPPVLVQK 974 (1047)
Q Consensus 948 ~~~il~~L~~~~~-~l~~~~v~~~l~~Q 974 (1047)
++.+-+-+..=.+ .++..+|++.+++|
T Consensus 837 ~~eld~~I~~e~t~~~~~~n~ne~~vq~ 864 (1072)
T KOG0979|consen 837 MDELDQAITDELTRALKFENVNEDAVQQ 864 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 3333333333333 45566666665444
No 218
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=88.76 E-value=35 Score=36.04 Aligned_cols=20 Identities=10% Similarity=0.456 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001598 623 TLVSSLEKKIDETEKKFEET 642 (1047)
Q Consensus 623 ~~l~~l~~~l~ele~~~~el 642 (1047)
..+.+...++...+++...+
T Consensus 118 k~~~ey~~~l~~~eqry~aL 137 (207)
T PF05010_consen 118 KCIEEYEERLKKEEQRYQAL 137 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 219
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=88.73 E-value=4.7 Score=38.86 Aligned_cols=66 Identities=17% Similarity=0.298 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001598 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1047)
Q Consensus 613 ~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le 678 (1047)
.|...+++|.+.++.+..++++..+.....+.+..+...++.....+++.++..+..|+.+|..++
T Consensus 58 ~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 58 SLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666766777666666666666666666666666666666666666666666654
No 220
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.51 E-value=8.6 Score=38.48 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=8.6
Q ss_pred HHHHHHhHHHHHHHHHH
Q 001598 670 LEEKVSDMETENQILRQ 686 (1047)
Q Consensus 670 Le~~l~~Le~E~~~L~q 686 (1047)
..-++++.+.|++.|+.
T Consensus 131 ~~~e~rkke~E~~kLk~ 147 (151)
T PF11559_consen 131 YEHELRKKEREIEKLKE 147 (151)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555555555554
No 221
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=88.44 E-value=24 Score=40.55 Aligned_cols=47 Identities=13% Similarity=0.189 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI 660 (1047)
Q Consensus 614 L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l 660 (1047)
+-.+-...+..+.+.+++..+...-..++..++.+...+|+.....+
T Consensus 271 l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~em 317 (359)
T PF10498_consen 271 LIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEM 317 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444433
No 222
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=88.41 E-value=10 Score=45.17 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=7.0
Q ss_pred HHHHHHHHHhHHHHHH
Q 001598 667 MHRLEEKVSDMETENQ 682 (1047)
Q Consensus 667 ~~~Le~~l~~Le~E~~ 682 (1047)
+..|+++++..++|..
T Consensus 240 ~a~L~Eq~~eK~~e~~ 255 (861)
T KOG1899|consen 240 MAPLREQRSEKNDEEM 255 (861)
T ss_pred hhhHHHHHhhhhhHHH
Confidence 3444444444444443
No 223
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=88.30 E-value=65 Score=39.94 Aligned_cols=7 Identities=43% Similarity=0.776 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 001598 533 LEKQVEE 539 (1047)
Q Consensus 533 LE~kv~e 539 (1047)
|++++.|
T Consensus 439 Lq~ql~e 445 (861)
T PF15254_consen 439 LQNQLQE 445 (861)
T ss_pred HHHHHHH
Confidence 3333333
No 224
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=88.18 E-value=25 Score=46.32 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKID 633 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ 633 (1047)
.++...++.|...++.+++.++..+.
T Consensus 172 ~a~~~~lqae~~~l~~~~~~l~~~l~ 197 (1109)
T PRK10929 172 QAQLTALQAESAALKALVDELELAQL 197 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555554444
No 225
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.10 E-value=92 Score=40.13 Aligned_cols=9 Identities=56% Similarity=1.003 Sum_probs=5.5
Q ss_pred CCCCccChH
Q 001598 305 GYPTRKPFD 313 (1047)
Q Consensus 305 Gyp~r~~~~ 313 (1047)
|||.+.+-.
T Consensus 67 g~~i~~~v~ 75 (1141)
T KOG0018|consen 67 GKPIRKPVT 75 (1141)
T ss_pred CCccCCchh
Confidence 666666554
No 226
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=88.10 E-value=87 Score=39.83 Aligned_cols=78 Identities=18% Similarity=0.253 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001598 609 AVVEELTSENEKLKTLVSSLEKKIDE------TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1047)
Q Consensus 609 ~~~~~L~~e~~~L~~~l~~l~~~l~e------le~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~ 682 (1047)
..+..|..++.+....+..+...+.. ....+..++.+......++...+..++.|-..+..++..-..++.++.
T Consensus 514 s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~ 593 (775)
T PF10174_consen 514 SEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIG 593 (775)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444444444444444444444432 222334444444444444444444555554444444444444444444
Q ss_pred HHHH
Q 001598 683 ILRQ 686 (1047)
Q Consensus 683 ~L~q 686 (1047)
.|..
T Consensus 594 ~Lek 597 (775)
T PF10174_consen 594 ELEK 597 (775)
T ss_pred HHHH
Confidence 4444
No 227
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=88.06 E-value=1.2e+02 Score=41.53 Aligned_cols=19 Identities=5% Similarity=-0.155 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001598 428 RIQRDLRMYLAKKAYKDMC 446 (1047)
Q Consensus 428 ~IQ~~~R~~~~Rk~y~~~r 446 (1047)
+-.+.|-|..+|..++..+
T Consensus 725 k~~a~~IG~~aR~~~R~~r 743 (1353)
T TIGR02680 725 KPAAEYIGAAARERARLRR 743 (1353)
T ss_pred CcchhHhhHHHHHHHHHHH
Confidence 4456677888888777554
No 228
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.97 E-value=58 Score=37.70 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 520 ARETGALQAAKNKLEKQVEELTWRLQ 545 (1047)
Q Consensus 520 a~~~~~l~~~~~~LE~kv~el~~~l~ 545 (1047)
..-+.+|......+..++.++++.-+
T Consensus 292 eayLaKL~~~l~~~~~~~~~ltqqwe 317 (521)
T KOG1937|consen 292 EAYLAKLMGKLAELNKQMEELTQQWE 317 (521)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555444
No 229
>PF13514 AAA_27: AAA domain
Probab=87.88 E-value=52 Score=44.18 Aligned_cols=81 Identities=15% Similarity=0.241 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001598 606 IDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSK--IS---EERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1047)
Q Consensus 606 ~~~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~--~~---~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E 680 (1047)
....+...+..+...++..++.++.++..++.++..+.- .. ......|......+......+..++.++..++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~e~~~~~~~ 318 (1111)
T PF13514_consen 239 DGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEAELAELEAE 318 (1111)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777777777777776666655421 11 1122222223333344444555555555555555
Q ss_pred HHHHHH
Q 001598 681 NQILRQ 686 (1047)
Q Consensus 681 ~~~L~q 686 (1047)
+..+..
T Consensus 319 ~~~~~~ 324 (1111)
T PF13514_consen 319 LRALLA 324 (1111)
T ss_pred HHHHHH
Confidence 544433
No 230
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.82 E-value=82 Score=39.25 Aligned_cols=82 Identities=12% Similarity=0.128 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEE--------------RLKQALEAESKIVQLKTAMHRLEEK 673 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e--------------~~~~l~~~e~~l~~l~~~~~~Le~~ 673 (1047)
++++.++..+..+....+.+++.++..++.+.+.+-..... +.++....+.++..++++.+.....
T Consensus 791 qeqv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nl 870 (970)
T KOG0946|consen 791 QEQVIELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNL 870 (970)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhH
Confidence 44444444445555555555555555554444443332222 2333344555556666666666666
Q ss_pred HHhHHHHHHHHHHhcc
Q 001598 674 VSDMETENQILRQQSL 689 (1047)
Q Consensus 674 l~~Le~E~~~L~qq~~ 689 (1047)
++.+.+++..|..|+.
T Consensus 871 i~~ltEk~~sl~~qad 886 (970)
T KOG0946|consen 871 IKELTEKISSLEAQAD 886 (970)
T ss_pred HHHHhhhhhhHHHhhc
Confidence 6666666666655443
No 231
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=87.79 E-value=8.6 Score=46.58 Aligned_cols=98 Identities=18% Similarity=0.272 Sum_probs=71.8
Q ss_pred CccccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHhhhhcCCCCCCchhhHHhhchhHHHHHHhhhcc
Q 001598 943 SASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKE 1022 (1047)
Q Consensus 943 ~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~qlf~fin~~lfN~Ll~r~~~cs~s~g~qIr~nls~Le~W~~~~~~ 1022 (1047)
++++.....+..|...+..|+.. +++.....+...+..-|+..+|+.++++. -.|..-|.|+.+=+ +.++.--+
T Consensus 352 ~~S~el~~~L~~L~~~L~~L~~~-L~~~~f~~i~r~ia~~l~~~l~~~Il~~n-~Fs~~Ga~Ql~~D~---~~L~~~~~- 425 (494)
T PF04437_consen 352 SPSPELVPALSLLRSRLSFLERS-LPPADFRRIWRRIASKLDDYLWESILMSN-KFSRAGAAQLQFDM---RALFSVFS- 425 (494)
T ss_dssp ---GGGHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHHTTTTTS--B-HHHHHHHHHHH---HHHHTTS--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHhhhcC-eeChhHHHHHHHHH---HHHHHHHH-
Confidence 45667888999999999999999 99999999999999999999999999976 34445556655544 45555443
Q ss_pred cccCCchHHhhhHHHHHhhhhccc
Q 001598 1023 EYAGSSWDELKHIRQAVGFLVCHF 1046 (1047)
Q Consensus 1023 ~~~~~~~~~L~~i~Qa~~lL~~~~ 1046 (1047)
.+....-.++..|.+++.||-++.
T Consensus 426 ~~~~~p~~~f~~l~E~~~LL~L~~ 449 (494)
T PF04437_consen 426 QYTPRPEAFFKRLREACKLLNLPY 449 (494)
T ss_dssp -TTSGG-HHHHHHHHHHHHHGGGG
T ss_pred hhccCHHHHHHHHHHHHHHcCCCC
Confidence 244444579999999999998764
No 232
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=87.72 E-value=44 Score=38.43 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001598 645 ISEERLKQALEAESKIVQLKTAMHRLEEKVSD 676 (1047)
Q Consensus 645 ~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~ 676 (1047)
+..+...++...+.++.++++.+..|+.+...
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~ 260 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEE 260 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 233
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.69 E-value=62 Score=40.93 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFE 640 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~ 640 (1047)
.++++.+..++..++..+++++.+++..+.+.+
T Consensus 638 ~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 638 KKELERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667777777788888888777776555444
No 234
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=87.55 E-value=0.17 Score=64.94 Aligned_cols=81 Identities=25% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
...+..+..++..|..++.++...+.+..+.+.++++.+..++.++.+++..+.+++..+...+....+++-++..++++
T Consensus 425 ~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e 504 (859)
T PF01576_consen 425 QEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQE 504 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666777777777666666655555556655555555555555555555555555555555555555555554
Q ss_pred c
Q 001598 688 S 688 (1047)
Q Consensus 688 ~ 688 (1047)
.
T Consensus 505 ~ 505 (859)
T PF01576_consen 505 I 505 (859)
T ss_dssp -
T ss_pred H
Confidence 3
No 235
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=87.55 E-value=22 Score=38.23 Aligned_cols=64 Identities=17% Similarity=0.293 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001598 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1047)
Q Consensus 610 ~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E 680 (1047)
+.+.|..|.....++|......+..++..+..++.+.. ..+..+..+.++...|.+++..+..+
T Consensus 40 E~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~-------~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 40 EMEELLQERMAHVEELRQINQDINTLENIIKQAESERN-------KRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555444 44444455666666666666666666
No 236
>PRK11281 hypothetical protein; Provisional
Probab=87.30 E-value=41 Score=44.54 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKID 633 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ 633 (1047)
.++...|+.|...++.+++-.+..+.
T Consensus 191 ~~~~~~l~ae~~~l~~~~~~~~~~l~ 216 (1113)
T PRK11281 191 PSQRVLLQAEQALLNAQNDLQRKSLE 216 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555554444443
No 237
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=87.26 E-value=72 Score=37.97 Aligned_cols=79 Identities=15% Similarity=0.235 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001598 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1047)
Q Consensus 607 ~~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~ 685 (1047)
+...+...+++++.+.+.+++..+.+++-+.....++...+...+.+.+.+++..+.++.+..|+..=..-++.+..++
T Consensus 345 e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~ 423 (570)
T COG4477 345 ELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLK 423 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677778888888888888888877777777777777777766666655555555555554443333333333333
No 238
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=87.08 E-value=0.19 Score=63.60 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001598 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1047)
Q Consensus 652 ~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L 684 (1047)
++..+++++..++.+...+..+...|++.++.|
T Consensus 392 e~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL 424 (713)
T PF05622_consen 392 ENKQLEEKLEALEEEKERLQEERDSLRETNEEL 424 (713)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444444444444444444433333
No 239
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=86.74 E-value=8.1 Score=40.65 Aligned_cols=62 Identities=27% Similarity=0.404 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1047)
Q Consensus 614 L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~ 675 (1047)
++.+++++...++-+++++++.+++++.+++....+.++.++.....+.+-++...|++++.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 44444455555555555555555555555555555555555555555555555555555543
No 240
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.56 E-value=81 Score=39.28 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKI 632 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l 632 (1047)
.+.+..+..|.+++......+.+++
T Consensus 736 ~eel~a~~~e~k~l~~~q~~l~~~L 760 (970)
T KOG0946|consen 736 NEELNAALSENKKLENDQELLTKEL 760 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666655555555544
No 241
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=85.92 E-value=59 Score=40.08 Aligned_cols=7 Identities=29% Similarity=1.080 Sum_probs=3.3
Q ss_pred ccceeee
Q 001598 352 GKTKVFL 358 (1047)
Q Consensus 352 G~TkVFl 358 (1047)
|+++.|+
T Consensus 105 grs~~~i 111 (563)
T TIGR00634 105 GRSRAYL 111 (563)
T ss_pred CceEEEE
Confidence 4454444
No 242
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=85.87 E-value=14 Score=33.99 Aligned_cols=70 Identities=20% Similarity=0.169 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001598 616 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1047)
Q Consensus 616 ~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~ 685 (1047)
.|-.+|+.+..-+++.+-+.+.+..+++..+...+..+..++..++-|.=.+..|...+..|++|++...
T Consensus 5 ~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~ 74 (102)
T PF10205_consen 5 QEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESE 74 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555555555555555555556666666666667777777777777776443
No 243
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=85.82 E-value=68 Score=36.26 Aligned_cols=78 Identities=13% Similarity=0.154 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA----------------------------ESK 659 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~----------------------------e~~ 659 (1047)
.++.+.-.-++..|-+.+++.+..+..-+.+..++-..+.++...|... +--
T Consensus 434 SEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkdayELEVL 513 (593)
T KOG4807|consen 434 SEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEVL 513 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchhhHHHH
Confidence 5566666667777777777776666666666666666555555444321 112
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001598 660 IVQLKTAMHRLEEKVSDMETENQILR 685 (1047)
Q Consensus 660 l~~l~~~~~~Le~~l~~Le~E~~~L~ 685 (1047)
+.--+.+++=|+.+|..|++|+....
T Consensus 514 LRVKEsEiQYLKqEissLkDELQtal 539 (593)
T KOG4807|consen 514 LRVKESEIQYLKQEISSLKDELQTAL 539 (593)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22335666777777777777776543
No 244
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=85.75 E-value=35 Score=41.64 Aligned_cols=6 Identities=67% Similarity=1.027 Sum_probs=2.7
Q ss_pred HHhhhh
Q 001598 988 FNSLLL 993 (1047)
Q Consensus 988 fN~Ll~ 993 (1047)
||.|+.
T Consensus 824 F~nLi~ 829 (916)
T KOG0249|consen 824 FNNLLA 829 (916)
T ss_pred HHhhhc
Confidence 444443
No 245
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.56 E-value=1e+02 Score=37.98 Aligned_cols=36 Identities=11% Similarity=0.229 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 001598 891 FKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRT 927 (1047)
Q Consensus 891 f~q~L~~~~~~iy~~l~~~~~k~L~~~l~~~i~~~~~ 927 (1047)
|+.++... ++-++-+-.....++.-+...|-.-+|+
T Consensus 605 lk~ev~s~-ekr~~rlk~vF~~ki~eFr~ac~sL~Gy 640 (716)
T KOG4593|consen 605 LKKEVESA-EKRNQRLKEVFASKIQEFRDACYSLLGY 640 (716)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44444432 2334444555555666666655444444
No 246
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=85.50 E-value=60 Score=35.37 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 644 KISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 644 ~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
.++....+++..-.+-++++++++..|+.++..|..+...-+..
T Consensus 186 ~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~ 229 (258)
T PF15397_consen 186 LENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREV 229 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Confidence 44444555555555666667777777777777777777655553
No 247
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=85.45 E-value=89 Score=37.27 Aligned_cols=12 Identities=17% Similarity=0.451 Sum_probs=4.5
Q ss_pred HHHHHHhHHHHH
Q 001598 670 LEEKVSDMETEN 681 (1047)
Q Consensus 670 Le~~l~~Le~E~ 681 (1047)
|.++|+.|.+.+
T Consensus 170 L~~qi~~L~~~n 181 (475)
T PRK10361 170 LAHEIRNLQQLN 181 (475)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 248
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=85.33 E-value=19 Score=41.12 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA 653 (1047)
Q Consensus 612 ~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l 653 (1047)
+.+.+++..+..+.+.+.+++.+.|-++++|+++...+.++.
T Consensus 30 s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 30 SRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444333
No 249
>PLN03188 kinesin-12 family protein; Provisional
Probab=85.31 E-value=34 Score=44.78 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001598 648 ERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1047)
Q Consensus 648 e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~ 688 (1047)
++.-.|+++++...-.++.....+.+..++.++++.|+.+.
T Consensus 1201 ellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh 1241 (1320)
T PLN03188 1201 ELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKH 1241 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555666666666666666665544
No 250
>PRK12704 phosphodiesterase; Provisional
Probab=85.05 E-value=37 Score=41.27 Aligned_cols=9 Identities=33% Similarity=0.501 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 001598 950 SIIDSLNTL 958 (1047)
Q Consensus 950 ~il~~L~~~ 958 (1047)
..++.|..+
T Consensus 440 ~~i~rl~~l 448 (520)
T PRK12704 440 NYIKRLEKL 448 (520)
T ss_pred HHHHHHHHH
Confidence 333333333
No 251
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=85.05 E-value=21 Score=30.89 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001598 619 EKLKTLVSSLEKKIDETEK 637 (1047)
Q Consensus 619 ~~L~~~l~~l~~~l~ele~ 637 (1047)
..+-..+..++.++++++.
T Consensus 14 ~~aveti~~Lq~e~eeLke 32 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKE 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 252
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=84.83 E-value=60 Score=34.81 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 001598 663 LKTAMHRLEEKVSDMETEN 681 (1047)
Q Consensus 663 l~~~~~~Le~~l~~Le~E~ 681 (1047)
....+.++++++...+..-
T Consensus 164 a~~~fer~e~kiee~ea~a 182 (225)
T COG1842 164 AMAAFERMEEKIEEREARA 182 (225)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544
No 253
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=84.77 E-value=24 Score=36.76 Aligned_cols=131 Identities=18% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHH
Q 001598 533 LEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVE 612 (1047)
Q Consensus 533 LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~ 612 (1047)
|...+.|.+..+. .+..|+-.|+..+.+....+.........-.........++ +
T Consensus 15 LKqQLke~q~E~~-----------~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~EL--------------E 69 (202)
T PF06818_consen 15 LKQQLKESQAEVN-----------QKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLEL--------------E 69 (202)
T ss_pred HHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhH--------------H
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001598 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEER---------LKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1047)
Q Consensus 613 ~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~---------~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~ 683 (1047)
....++.....+.+-+++++..++.++.+++...... .....++...-..-......|..++.+|..|+..
T Consensus 70 ~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~ 149 (202)
T PF06818_consen 70 VCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQR 149 (202)
T ss_pred HhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHH
Q ss_pred HHHhc
Q 001598 684 LRQQS 688 (1047)
Q Consensus 684 L~qq~ 688 (1047)
++++.
T Consensus 150 er~~~ 154 (202)
T PF06818_consen 150 ERQRR 154 (202)
T ss_pred HHHhH
No 254
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=84.66 E-value=12 Score=40.81 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~ 683 (1047)
..+++.+..+...|..++..++.+++.++...+.+++......+++.+++.+++.++.....+.--+..+-++++.
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566666666666666666666666666666666566666666666655555555555544444444443
No 255
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=84.63 E-value=86 Score=40.57 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhccCCC-eeeee-------------cCCCCC--CCCCccccc
Q 001598 248 FKQQLQQLLETLSSSEP-HYIRC-------------VKPNNL--LKPAIFENK 284 (1047)
Q Consensus 248 f~~~l~~L~~~l~~t~~-hfIrC-------------ikpN~~--~~~~~fd~~ 284 (1047)
.-..|..|+++|...+. ++|+| +-|++. +..+.||.+
T Consensus 164 IPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~~~k~~~ 216 (1041)
T KOG0243|consen 164 IPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDTSDKKLRIKDDS 216 (1041)
T ss_pred chHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCccccccccccccCC
Confidence 34567777777777763 44666 355555 455666665
No 256
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=84.59 E-value=75 Score=41.08 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=16.9
Q ss_pred HHHHHHhhCCCCccChHHHHH--HHhhhhcc
Q 001598 297 EAIRISCAGYPTRKPFDEFVD--RFGILASK 325 (1047)
Q Consensus 297 e~~~i~~~Gyp~r~~~~~F~~--ry~~l~~~ 325 (1047)
+.+.-..+-|..+++|-|.+. -|-.|.|+
T Consensus 173 d~Le~~~~EYsvKVSfLELYNEEl~DLLa~~ 203 (1041)
T KOG0243|consen 173 DTLEAQGAEYSVKVSFLELYNEELTDLLASE 203 (1041)
T ss_pred HHHHhcCCeEEEEEEehhhhhHHHHHhcCCc
Confidence 344444455777777777663 45555554
No 257
>PRK11281 hypothetical protein; Provisional
Probab=84.51 E-value=68 Score=42.53 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001598 662 QLKTAMHRLEEKVSDMETENQILRQQS 688 (1047)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~E~~~L~qq~ 688 (1047)
+.-+.+..|-+.+..+..+++.+.++.
T Consensus 282 ~~~~~N~~Ls~~L~~~t~~~~~l~~~~ 308 (1113)
T PRK11281 282 QELEINLQLSQRLLKATEKLNTLTQQN 308 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777776665543
No 258
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.49 E-value=67 Score=38.12 Aligned_cols=78 Identities=23% Similarity=0.334 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~ 685 (1047)
.++++...++++.|++.++.++..+.+.+..+..++.+-..+..-....+.++..++--+++-.+++.+++.++....
T Consensus 330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh 407 (654)
T KOG4809|consen 330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAH 407 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777776666666666666555555555555666666666666666666666554443
No 259
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=83.96 E-value=27 Score=35.97 Aligned_cols=82 Identities=10% Similarity=0.196 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 001598 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1047)
Q Consensus 610 ~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~~ 689 (1047)
+...|+.++.-++..+...+.+...++..+.-....-.+....-..+......|+.+....+.++..|+..+..|+.+..
T Consensus 106 rR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 106 RRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456666777777777777777777766666666656666666677777778888888888889999999988888765
Q ss_pred cc
Q 001598 690 LS 691 (1047)
Q Consensus 690 ~~ 691 (1047)
..
T Consensus 186 ~~ 187 (192)
T PF11180_consen 186 EP 187 (192)
T ss_pred CC
Confidence 33
No 260
>PRK10869 recombination and repair protein; Provisional
Probab=83.95 E-value=1.1e+02 Score=37.70 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001598 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1047)
Q Consensus 657 e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~ 688 (1047)
+..+.+++.++..+.+++..+-.++...|+++
T Consensus 340 e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~a 371 (553)
T PRK10869 340 EDDLETLALAVEKHHQQALETAQKLHQSRQRY 371 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555543
No 261
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=83.92 E-value=3.3 Score=48.41 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 623 TLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKV 674 (1047)
Q Consensus 623 ~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l 674 (1047)
..+.+.+.+.+++|++++.++.+.+.+..+..+.+++++++++++..|++++
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666655555444555554444444444444444333
No 262
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=83.75 E-value=24 Score=32.98 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001598 654 LEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1047)
Q Consensus 654 ~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~ 683 (1047)
+.++..++.++.++..++.++..++.++..
T Consensus 73 e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 73 ETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 263
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=83.60 E-value=1.4e+02 Score=38.19 Aligned_cols=21 Identities=10% Similarity=-0.056 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q 001598 661 VQLKTAMHRLEEKVSDMETEN 681 (1047)
Q Consensus 661 ~~l~~~~~~Le~~l~~Le~E~ 681 (1047)
.+|+.+.+..++....+-...
T Consensus 379 ~~L~Re~~~~~~~Y~~ll~r~ 399 (754)
T TIGR01005 379 DALQRDAAAKRQLYESYLTNY 399 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444333333333333333
No 264
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=83.57 E-value=1e+02 Score=36.56 Aligned_cols=8 Identities=38% Similarity=0.434 Sum_probs=4.3
Q ss_pred ccceeeec
Q 001598 352 GKTKVFLR 359 (1047)
Q Consensus 352 G~TkVFlr 359 (1047)
+.+.|++.
T Consensus 41 a~a~l~v~ 48 (444)
T TIGR03017 41 ATTSVVLD 48 (444)
T ss_pred EEEEEEEe
Confidence 55555554
No 265
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=83.39 E-value=5 Score=41.01 Aligned_cols=67 Identities=22% Similarity=0.366 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
.+.+..+..++..|+.++.+++..+..++.++..+... + ...++...+..|+.++..+++.++.|+.
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~-------~-----t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSE-------P-----TNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------C-----CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555555554444444443322 1 1134555555666666666666666665
No 266
>PRK00106 hypothetical protein; Provisional
Probab=83.38 E-value=53 Score=39.88 Aligned_cols=29 Identities=14% Similarity=0.090 Sum_probs=14.4
Q ss_pred ccHHHHHHHHHHHHHHHH-hcCCCHHHHHH
Q 001598 946 SHWQSIIDSLNTLLSTLK-QNFVPPVLVQK 974 (1047)
Q Consensus 946 ~~~~~il~~L~~~~~~l~-~~~v~~~l~~Q 974 (1047)
.++...++.|..+=.+.. .-||...+..|
T Consensus 451 ~s~~~~i~rl~~lE~ia~~~~gV~~~yaiq 480 (535)
T PRK00106 451 ESMENYIKRLRDLEEIANSFDGVQNSFALQ 480 (535)
T ss_pred CCHHHHHHHHHHHHHHHhcCCcHHHHHHHh
Confidence 345566666666655542 33444444333
No 267
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=83.26 E-value=1.3e+02 Score=37.29 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 654 ~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
.+.-+.+...-++-.....++..|++.++...+
T Consensus 560 h~~c~~Li~~v~~tG~~~rEirdLe~qI~~e~~ 592 (594)
T PF05667_consen 560 HENCSQLIETVEETGTISREIRDLEEQIDTESQ 592 (594)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 333444444455556677777778887776654
No 268
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=83.23 E-value=1.7e+02 Score=38.88 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSK 644 (1047)
Q Consensus 613 ~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~ 644 (1047)
.+...+...++.+.+.+.+..+++..+..++.
T Consensus 301 ~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~ 332 (1294)
T KOG0962|consen 301 ELGELLSNFEERLEEMGEKLRELEREISDLNE 332 (1294)
T ss_pred HHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 269
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=83.14 E-value=85 Score=35.22 Aligned_cols=31 Identities=13% Similarity=0.234 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 657 e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
..++..+-.+...|.++|.+|+.+++..+..
T Consensus 218 DvRLkKl~~eke~L~~qv~klk~qLee~~~~ 248 (302)
T PF09738_consen 218 DVRLKKLADEKEELLEQVRKLKLQLEERQSE 248 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456777888888888888888887766653
No 270
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=83.12 E-value=1.1e+02 Score=36.58 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 662 QLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
....++..++.++..++.++...+.
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555544443
No 271
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=83.04 E-value=25 Score=30.65 Aligned_cols=28 Identities=11% Similarity=0.175 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 615 TSENEKLKTLVSSLEKKIDETEKKFEET 642 (1047)
Q Consensus 615 ~~e~~~L~~~l~~l~~~l~ele~~~~el 642 (1047)
-..+.-|+-++++++++...+..+...+
T Consensus 17 vdtI~LLqmEieELKekn~~L~~e~~~~ 44 (79)
T PRK15422 17 IDTITLLQMEIEELKEKNNSLSQEVQNA 44 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444333333
No 272
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=82.95 E-value=45 Score=31.84 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001598 627 SLEKKIDETEKKFEETSK 644 (1047)
Q Consensus 627 ~l~~~l~ele~~~~el~~ 644 (1047)
+++++++.++.++..+++
T Consensus 74 eL~er~E~Le~ri~tLek 91 (119)
T COG1382 74 ELEERKETLELRIKTLEK 91 (119)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 273
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.90 E-value=88 Score=36.40 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=6.2
Q ss_pred HHHHHHHHhHHHHHH
Q 001598 668 HRLEEKVSDMETENQ 682 (1047)
Q Consensus 668 ~~Le~~l~~Le~E~~ 682 (1047)
...+++|..|++++.
T Consensus 431 ~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 431 GSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 274
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=82.69 E-value=57 Score=32.92 Aligned_cols=79 Identities=13% Similarity=0.168 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
++.+...-.+-..++-.+.-++++-..+..+..+++.....+..-++.++.-+....--+.=|...+..+...++.+++
T Consensus 76 E~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~~ 154 (159)
T PF05384_consen 76 EEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQQ 154 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4445555556666666666666666667777777777666666666666655555555555555666665555555543
No 275
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=82.52 E-value=1.1e+02 Score=35.88 Aligned_cols=166 Identities=19% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------
Q 001598 506 GKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQ---------------------------------------- 545 (1047)
Q Consensus 506 ~~~ark~l~~l~~~a~~~~~l~~~~~~LE~kv~el~~~l~---------------------------------------- 545 (1047)
....+.--+.+..+.+.+..++.+++.||..+.+-..-+.
T Consensus 129 ~~~~~lL~~~l~~~~eQl~~lr~ar~~Le~Dl~dK~~A~~ID~~~~~L~~~S~~i~~~~~~~r~~~~~~tp~~W~~~s~~ 208 (384)
T PF03148_consen 129 ENIKRLLQRTLEQAEEQLRLLRAARYRLEKDLSDKFEALEIDTQCLSLNNNSTNISYKPGSTRIPKNSSTPESWEEFSNE 208 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCcccCCcccccccCCChHHHHHHHHH
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Q 001598 546 ---LEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLK 622 (1047)
Q Consensus 546 ---~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~ 622 (1047)
..+..+.....-+..-..-+.....++..+.......+.+.+........++ +.+......++..++
T Consensus 209 ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~L----------e~ql~~~~~ei~~~e 278 (384)
T PF03148_consen 209 NIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNEL----------EWQLKKTLQEIAEME 278 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 623 TLVSSLEKKIDE-------------------------------TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLE 671 (1047)
Q Consensus 623 ~~l~~l~~~l~e-------------------------------le~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le 671 (1047)
..++.+++.+.+ +-.+..++..-...+..+|.+++..+..|......|+
T Consensus 279 ~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le 358 (384)
T PF03148_consen 279 KNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLE 358 (384)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHH
Q 001598 672 EKVSDMETEN 681 (1047)
Q Consensus 672 ~~l~~Le~E~ 681 (1047)
..|.....-+
T Consensus 359 ~di~~K~~sL 368 (384)
T PF03148_consen 359 EDIAVKNNSL 368 (384)
T ss_pred HHHHHHHHHH
No 276
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=82.26 E-value=13 Score=37.08 Aligned_cols=25 Identities=8% Similarity=0.317 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 662 QLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
++++++.+|+..+...++.+..++.
T Consensus 120 emQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 120 EMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555543
No 277
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=82.13 E-value=13 Score=38.62 Aligned_cols=77 Identities=30% Similarity=0.456 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHH
Q 001598 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETS------KISEERLKQALEAESKIVQLKTAMHRLE----EKVSDMETEN 681 (1047)
Q Consensus 612 ~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~------~~~~e~~~~l~~~e~~l~~l~~~~~~Le----~~l~~Le~E~ 681 (1047)
..+.....+|+.+++.++.++.+++.++.+.+ .+..++..++++++..+..++.++..+. +.+..+++++
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~ 144 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEI 144 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 33344444444444444444444444443332 2333445555555555555555555332 3455555555
Q ss_pred HHHHHhc
Q 001598 682 QILRQQS 688 (1047)
Q Consensus 682 ~~L~qq~ 688 (1047)
..++..+
T Consensus 145 ~~~~~~a 151 (188)
T PF03962_consen 145 KIAKEAA 151 (188)
T ss_pred HHHHHHH
Confidence 5555433
No 278
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=81.78 E-value=28 Score=32.17 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1047)
Q Consensus 610 ~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~ 675 (1047)
+...|.+++.-|+..+-+.+.+..++...+...+..+.+++.+++.+.-.-.+|...+..|++++.
T Consensus 6 eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 6 EYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555555555555555555555
No 279
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=81.73 E-value=57 Score=39.63 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 001598 547 EKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVS 626 (1047)
Q Consensus 547 e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~ 626 (1047)
....+..++.+......-.++...+.+....+...+...+....+.+.++..... +.++...+..+..-+..++
T Consensus 20 k~~a~~~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~------e~rL~qrE~rL~qRee~Le 93 (514)
T TIGR03319 20 KRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKER------RNELQRLERRLLQREETLD 93 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001598 627 SLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1047)
Q Consensus 627 ~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E 680 (1047)
.-++.++..++++...++.+++..+++++.+.+..++..+...-=+++..|..+
T Consensus 94 kr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~ 147 (514)
T TIGR03319 94 RKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQE 147 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
No 280
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=81.72 E-value=75 Score=36.04 Aligned_cols=45 Identities=29% Similarity=0.339 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 531 NKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEK 582 (1047)
Q Consensus 531 ~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~ 582 (1047)
..+..|+++|-+.|.. . =+...+|+.+|+.+-.+++..+...++.
T Consensus 277 ~~m~tKveelar~Lr~------~-I~~VarENs~LqrQKle~e~~l~a~qea 321 (442)
T PF06637_consen 277 KIMTTKVEELARSLRA------G-IERVARENSDLQRQKLEAEQGLQASQEA 321 (442)
T ss_pred HHHHHHHHHHHHHHhh------h-HHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3467788888766651 1 1145567777777666666665554433
No 281
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=81.60 E-value=69 Score=33.13 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHh
Q 001598 665 TAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 665 ~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
..-...++.|..|+.||+.||..
T Consensus 153 ~~~~~~qe~i~qL~~EN~~LRel 175 (181)
T PF05769_consen 153 ENSQEEQEIIAQLETENKGLREL 175 (181)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHH
Confidence 33456777888888888888864
No 282
>PRK09343 prefoldin subunit beta; Provisional
Probab=81.49 E-value=36 Score=32.69 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001598 645 ISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1047)
Q Consensus 645 ~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~ 688 (1047)
...++.++++-.+..++.++.....++.++.+++..+..+-++.
T Consensus 72 ~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 72 VEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445555556666777777777777777777777776666543
No 283
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=81.26 E-value=77 Score=33.42 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001598 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI-VQLKTAMHRLEEKVSDMETENQILRQQS 688 (1047)
Q Consensus 610 ~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l-~~l~~~~~~Le~~l~~Le~E~~~L~qq~ 688 (1047)
.+..+......++.++.+++-..+.++.+...++++.+++......+-..+ ....-...-|+.++..|.+.++.-..|.
T Consensus 87 ~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL 166 (201)
T PF13851_consen 87 SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQL 166 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666666666666666666666665554433333 2233344456677777776665544443
No 284
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=81.26 E-value=72 Score=34.82 Aligned_cols=31 Identities=29% Similarity=0.421 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSK 644 (1047)
Q Consensus 614 L~~e~~~L~~~l~~l~~~l~ele~~~~el~~ 644 (1047)
|+..++.++..+++.++++++++.++.+++.
T Consensus 68 L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 68 LEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444333
No 285
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=81.19 E-value=0.48 Score=59.95 Aligned_cols=46 Identities=26% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001598 638 KFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1047)
Q Consensus 638 ~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~ 683 (1047)
++..++++..++..++.+...+.+.++.++..|++++..++.+.+.
T Consensus 364 qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~ 409 (713)
T PF05622_consen 364 QLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKER 409 (713)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444433
No 286
>PF15556 Zwint: ZW10 interactor
Probab=81.02 E-value=72 Score=32.92 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 664 KTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 664 ~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
.+.......++..+..|++.|++|
T Consensus 147 rerq~~~qqeLe~l~qeL~~lkqQ 170 (252)
T PF15556_consen 147 RERQTGTQQELERLYQELGTLKQQ 170 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444443
No 287
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=81.02 E-value=7.5 Score=39.71 Aligned_cols=27 Identities=33% Similarity=0.396 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 610 VVEELTSENEKLKTLVSSLEKKIDETE 636 (1047)
Q Consensus 610 ~~~~L~~e~~~L~~~l~~l~~~l~ele 636 (1047)
++..|..++..++..+..++..+..+.
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355555555555555555555554433
No 288
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=80.60 E-value=36 Score=32.03 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001598 654 LEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1047)
Q Consensus 654 ~~~e~~l~~l~~~~~~Le~~l~~Le~E~~ 682 (1047)
+.++..++.+++....++.++.+++.++.
T Consensus 77 e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 77 ETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443
No 289
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=80.34 E-value=89 Score=34.34 Aligned_cols=48 Identities=13% Similarity=0.183 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAE 657 (1047)
Q Consensus 610 ~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e 657 (1047)
.+..+..++..++..++.+...-..++.++++.+.+++...+.|..++
T Consensus 170 ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 170 AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555555555554443
No 290
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=80.22 E-value=16 Score=42.77 Aligned_cols=81 Identities=15% Similarity=0.188 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA-ESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~-e~~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
.+.+..|-.+.+.++.++..+..+++.+.++.++|++.......++..+ +..-.+++.+...|++++..++..+..|+.
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666677777777777777777777666666666555555554332 223345555555556666666666655555
Q ss_pred hc
Q 001598 687 QS 688 (1047)
Q Consensus 687 q~ 688 (1047)
+.
T Consensus 138 ~l 139 (472)
T TIGR03752 138 RL 139 (472)
T ss_pred HH
Confidence 43
No 291
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=80.12 E-value=1.3e+02 Score=35.22 Aligned_cols=58 Identities=24% Similarity=0.239 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHH
Q 001598 628 LEKKIDETEKKFEETSKISEERLKQALEAESKIVQLK----TAMHRLEEKVSDMETENQILR 685 (1047)
Q Consensus 628 l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~----~~~~~Le~~l~~Le~E~~~L~ 685 (1047)
|++.+..++.-++++...++..+.+|..+-.++.... .+...-+.++..|+.|+..|.
T Consensus 485 Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~ln 546 (622)
T COG5185 485 LEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLN 546 (622)
T ss_pred HHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444555555666666666666655555554333 233334445555555554443
No 292
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=80.04 E-value=24 Score=36.58 Aligned_cols=77 Identities=22% Similarity=0.271 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH----HHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 001598 610 VVEELTSENEKLKTLVSSLEKKIDE-----------TEKKFEET----SKISEERL-------KQALEAESKIVQLKTAM 667 (1047)
Q Consensus 610 ~~~~L~~e~~~L~~~l~~l~~~l~e-----------le~~~~el----~~~~~e~~-------~~l~~~e~~l~~l~~~~ 667 (1047)
+...|..|++.|+..+...+..... .+.+++.| +.++.++. ..+....+.++.+++++
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV 176 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQV 176 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 3445666666676666666665553 12222222 11222221 12455777888899999
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 001598 668 HRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 668 ~~Le~~l~~Le~E~~~L~q 686 (1047)
..|+..+...+.|++.|+|
T Consensus 177 ~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 177 DGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 9999999999999988874
No 293
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=79.78 E-value=95 Score=36.33 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 001598 456 MRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMK 492 (1047)
Q Consensus 456 ~Rg~~ar~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~ 492 (1047)
+--+.+-.++.....+.||.++|..|.-|+..+-+.+
T Consensus 349 VhNFMmDtqLTk~~KnAAA~VLqeTW~i~K~trl~~k 385 (489)
T KOG3684|consen 349 VHNFMMDTQLTKEHKNAAANVLQETWLIYKHTKLVSK 385 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3334444555566677889999999998887766543
No 294
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=79.55 E-value=1.5e+02 Score=35.59 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 001598 661 VQLKTAMHRLEEKVSDMETENQILR 685 (1047)
Q Consensus 661 ~~l~~~~~~Le~~l~~Le~E~~~L~ 685 (1047)
..+-+-+..|.+++...+++++.|+
T Consensus 490 s~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 490 SMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555555666666555
No 295
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=79.40 E-value=61 Score=31.12 Aligned_cols=58 Identities=29% Similarity=0.414 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001598 628 LEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1047)
Q Consensus 628 l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~ 685 (1047)
..+-+.+-+.+...+.+..++-..........+..+..++..|+..+..+++.+..+.
T Consensus 51 f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 51 FDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333334444445555555555555555555555443
No 296
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.33 E-value=27 Score=32.29 Aligned_cols=80 Identities=28% Similarity=0.317 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001598 607 DHAVVEELTSENEKLKTLVSSLEKKIDETE---------KKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1047)
Q Consensus 607 ~~~~~~~L~~e~~~L~~~l~~l~~~l~ele---------~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~L 677 (1047)
+....+.+..+...|+.+++.++..+..+. +++..++...+.....+..... .-+..++..|+.+...+
T Consensus 10 ~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~--~~l~~~i~~l~~ke~~l 87 (100)
T PF01486_consen 10 WDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKD--QLLMEQIEELKKKEREL 87 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 455667777777777777777776655422 3445555555555544444333 34777888888888888
Q ss_pred HHHHHHHHHhc
Q 001598 678 ETENQILRQQS 688 (1047)
Q Consensus 678 e~E~~~L~qq~ 688 (1047)
++++..|+++.
T Consensus 88 ~~en~~L~~~~ 98 (100)
T PF01486_consen 88 EEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHh
Confidence 89988888753
No 297
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=79.20 E-value=22 Score=37.04 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 617 ENEKLKTLVSSLEKKIDETEKKFEETS 643 (1047)
Q Consensus 617 e~~~L~~~l~~l~~~l~ele~~~~el~ 643 (1047)
+..+++..+.+++.++.+++.+...+.
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~ 151 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLK 151 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333333
No 298
>PF15294 Leu_zip: Leucine zipper
Probab=79.08 E-value=92 Score=34.33 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=8.0
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 001598 669 RLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 669 ~Le~~l~~Le~E~~~L~q 686 (1047)
.+.+-+.....+++.||.
T Consensus 257 NMk~~ltkKn~QiKeLRk 274 (278)
T PF15294_consen 257 NMKEILTKKNEQIKELRK 274 (278)
T ss_pred HhHHHHHhccHHHHHHHH
Confidence 344444444444444443
No 299
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=79.04 E-value=1.2e+02 Score=38.19 Aligned_cols=20 Identities=10% Similarity=0.110 Sum_probs=11.5
Q ss_pred Ccccchh-HhhHHHHHHHHHH
Q 001598 812 NDHMAYW-LSNTSTLLFLLQR 831 (1047)
Q Consensus 812 ~~~lafW-LsN~~~Ll~~lq~ 831 (1047)
+..+..| ..++-++..+|+.
T Consensus 480 V~~~t~~~V~s~~~v~~ll~~ 500 (670)
T KOG0239|consen 480 VPLLTVIKVGSSEEVDILLEI 500 (670)
T ss_pred cccceEEecCCHHHHHHHHHH
Confidence 4555566 5656666666643
No 300
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=79.03 E-value=0.62 Score=59.07 Aligned_cols=9 Identities=22% Similarity=0.796 Sum_probs=4.1
Q ss_pred HHHHHhhhc
Q 001598 1013 LELWCCQAK 1021 (1047)
Q Consensus 1013 Le~W~~~~~ 1021 (1047)
+..|+...+
T Consensus 696 i~~~v~~~~ 704 (722)
T PF05557_consen 696 IEFWVEERN 704 (722)
T ss_dssp HHHHTTTS-
T ss_pred HHHHHHcCC
Confidence 344555544
No 301
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=79.01 E-value=17 Score=34.06 Aligned_cols=74 Identities=26% Similarity=0.368 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001598 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1047)
Q Consensus 607 ~~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L 684 (1047)
.-+++-.+..+...+..++++++.+...+.+++..+.+.. .+..++......+.+++..++.++..+++++..+
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~----~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG----EDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788888888888888877777777777766532 1222333344445555555555555555555443
No 302
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=78.98 E-value=1.9e+02 Score=36.62 Aligned_cols=38 Identities=32% Similarity=0.534 Sum_probs=19.7
Q ss_pred cccccccCCccccCCchhh----h-hhhhchh----HHHhHHHHhhh
Q 001598 69 IGVLDIYGFESFKTNSFEQ----F-CINLTNE----KLQQHFNQHVF 106 (1047)
Q Consensus 69 IgvLDi~GFE~f~~Nsfeq----l-ciNyanE----kLq~~f~~~~f 106 (1047)
|-=|+||||=-|..-+|+- | .|==.|| .|+.++..-+|
T Consensus 3 I~sl~I~gYGKFs~r~~df~~s~f~vI~G~NEAGKSTl~sFI~smlF 49 (984)
T COG4717 3 IQSLEIVGYGKFSERHFDFGESKFQVIYGENEAGKSTLFSFIHSMLF 49 (984)
T ss_pred eeEEEeeeccchhhhhhhccCCceEEEecCccccHHHHHHHHHHHHc
Confidence 4457888887654333321 0 1112344 36666666666
No 303
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=78.89 E-value=45 Score=30.74 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEET 642 (1047)
Q Consensus 610 ~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el 642 (1047)
++..+..+...+...+..++..+.+.+....++
T Consensus 6 ~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL 38 (106)
T PF01920_consen 6 KFQELNQQLQQLEQQIQQLERQLRELELTLEEL 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555544444444444443
No 304
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=78.62 E-value=18 Score=33.87 Aligned_cols=71 Identities=27% Similarity=0.268 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 616 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 616 ~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
....++.+...++++++.+.+++.-.+.+...++..++.++.++...-.+ -..+..++..++.+++..+++
T Consensus 3 ~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~ 73 (106)
T PF05837_consen 3 LEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQR 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777777777777777777777666555543333 345556666666666665553
No 305
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.52 E-value=1.5e+02 Score=35.25 Aligned_cols=18 Identities=6% Similarity=-0.247 Sum_probs=9.0
Q ss_pred CcccchhHhhHHHHHHHH
Q 001598 812 NDHMAYWLSNTSTLLFLL 829 (1047)
Q Consensus 812 ~~~lafWLsN~~~Ll~~l 829 (1047)
+...+==|++.+.+.|..
T Consensus 487 lv~~SdeLaqlyh~vc~~ 504 (772)
T KOG0999|consen 487 LVTFSDELAQLYHHVCEC 504 (772)
T ss_pred HhhhhHHHHHHHHHHHHH
Confidence 444444466655555443
No 306
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=78.48 E-value=1.6e+02 Score=36.56 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSK 644 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~ 644 (1047)
..+++++...+..|+.+..+=.+++.+....+..+-.
T Consensus 159 l~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~ 195 (660)
T KOG4302|consen 159 LEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCS 195 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777766666666666665555543
No 307
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=78.39 E-value=36 Score=33.33 Aligned_cols=76 Identities=9% Similarity=0.227 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 612 ~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
..+...++.....+......+.....++..+....++....-..+.............-+..|++|..||+.++.=
T Consensus 22 ~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~W 97 (135)
T TIGR03495 22 RNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRW 97 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 3344444444444444444455555555555444444444444555555666677777788888899999998873
No 308
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.31 E-value=1.8e+02 Score=35.92 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 001598 471 TRASILIQSHCRKYLARLHYM 491 (1047)
Q Consensus 471 ~~aa~~IQ~~~R~~~~r~~~~ 491 (1047)
.++++..++.+..-..|.+..
T Consensus 86 ~k~~~i~~r~~~~~~dr~~~~ 106 (716)
T KOG4593|consen 86 TKAQSILARNYEAEVDRKHKL 106 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456667777666666666543
No 309
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=78.26 E-value=91 Score=32.50 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccc
Q 001598 650 LKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLLS 691 (1047)
Q Consensus 650 ~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~~~~ 691 (1047)
+.++..+..++.+++..+..|..+|.....-+.+|+|.....
T Consensus 128 ~eel~~a~~K~qemE~RIK~LhaqI~EKDAmIkVLQqrs~~~ 169 (205)
T PF12240_consen 128 EEELHMANRKCQEMENRIKALHAQIAEKDAMIKVLQQRSRKD 169 (205)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 456667788888999999999999999999999999876543
No 310
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=78.25 E-value=2.3e+02 Score=37.20 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHH
Q 001598 950 SIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQL 987 (1047)
Q Consensus 950 ~il~~L~~~~~~l~~~~v~~~l~~Q~f~qlf~fin~~l 987 (1047)
..+..+..+-..+...+++..+...+..++....|..+
T Consensus 740 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 777 (908)
T COG0419 740 KALELLEELREKLGKAGLRADILRNLLAQIEAEANEIL 777 (908)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555665555555555555555555555443
No 311
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=77.94 E-value=0.7 Score=58.60 Aligned_cols=80 Identities=29% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 001598 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1047)
Q Consensus 610 ~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~~ 689 (1047)
.+..+..+...|...+..+...+.+++..+.+++.++..+..++..++..+..+...+.+|+.+..-+.+|++-|+.+..
T Consensus 344 ~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~ 423 (722)
T PF05557_consen 344 ALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLK 423 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555556666666666666666666666666677777766554
No 312
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=77.85 E-value=1.2e+02 Score=33.78 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 001598 655 EAESKIVQLKTAMHRLEEKVSD 676 (1047)
Q Consensus 655 ~~e~~l~~l~~~~~~Le~~l~~ 676 (1047)
.-+.-+..|+..+++|..++++
T Consensus 198 kRQ~yI~~LEsKVqDLm~Eirn 219 (401)
T PF06785_consen 198 KRQAYIGKLESKVQDLMYEIRN 219 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 313
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=77.68 E-value=33 Score=31.68 Aligned_cols=70 Identities=19% Similarity=0.240 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001598 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISE---ERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1047)
Q Consensus 613 ~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~---e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~ 682 (1047)
-|++.+...-..+.++......+......++.... ...+++.+.+.++..|+..+..|++-.+.||...+
T Consensus 25 LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 25 LLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444444444433332 34445566677888888888888888888877654
No 314
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=77.66 E-value=9.4 Score=44.83 Aligned_cols=61 Identities=10% Similarity=0.050 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 627 SLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 627 ~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
.-+.++.+.+.+..+++++++++..+++.+..+..+++..+++++++++.|+++++.+..+
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 4455666677777777777777766666655666666666666666666666665444443
No 315
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=77.14 E-value=50 Score=30.75 Aligned_cols=8 Identities=38% Similarity=0.247 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 001598 569 LQEMQLQF 576 (1047)
Q Consensus 569 l~~le~~l 576 (1047)
++.+..++
T Consensus 15 ~~~l~~~~ 22 (105)
T cd00632 15 LQAYIVQR 22 (105)
T ss_pred HHHHHHHH
Confidence 33333333
No 316
>PF13166 AAA_13: AAA domain
Probab=76.96 E-value=2.2e+02 Score=36.20 Aligned_cols=177 Identities=23% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 509 ARRELRKL--KMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKE 586 (1047)
Q Consensus 509 ark~l~~l--~~~a~~~~~l~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e 586 (1047)
++.++... .........+......++..+..+...+..-... .........+...+...+..+...++.....+..+
T Consensus 270 ~~~~l~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~L~~K 348 (712)
T PF13166_consen 270 RKERLEKYFDEEYEKLIEELEKAIKKLEKAIENIIEQLESILSE-NDFYEEFEEDKEELKSAIEALKEELEELKKALEKK 348 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 001598 587 IEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEE-----TSKISEERLKQALEAESKIV 661 (1047)
Q Consensus 587 ~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~e-----l~~~~~e~~~~l~~~e~~l~ 661 (1047)
...-.. .-+...+.+........+..++..+......+..+.....+++..+.. ..........++..++..+.
T Consensus 349 ~~~~~~-~~~~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 427 (712)
T PF13166_consen 349 IKNPSS-PIELEEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLIAKLKEDIEEYQKEIKELEKEIN 427 (712)
T ss_pred Hhcccc-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 662 QLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
.++..+..++..+..++.++..|+.+
T Consensus 428 ~~~~~~~~~~~~~~~~~~~i~~l~~~ 453 (712)
T PF13166_consen 428 SLEKKLKKAKEEIKKIEKEIKELEAQ 453 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 317
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=76.96 E-value=18 Score=37.73 Aligned_cols=6 Identities=17% Similarity=0.279 Sum_probs=2.1
Q ss_pred HHHHHH
Q 001598 621 LKTLVS 626 (1047)
Q Consensus 621 L~~~l~ 626 (1047)
+++.++
T Consensus 130 ~~~~~~ 135 (192)
T PF05529_consen 130 LEEKLE 135 (192)
T ss_pred HHHHHH
Confidence 333333
No 318
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.70 E-value=45 Score=28.18 Aligned_cols=12 Identities=17% Similarity=0.296 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 001598 622 KTLVSSLEKKID 633 (1047)
Q Consensus 622 ~~~l~~l~~~l~ 633 (1047)
+-++++++++..
T Consensus 24 QmEieELKEknn 35 (79)
T COG3074 24 QMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHhh
Confidence 333333333333
No 319
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=76.64 E-value=77 Score=36.91 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 001598 658 SKIVQLKTAMHRLEEKVSDME 678 (1047)
Q Consensus 658 ~~l~~l~~~~~~Le~~l~~Le 678 (1047)
+...++++.++..+..|.++|
T Consensus 298 eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 298 ERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 334456666777777777777
No 320
>PF14992 TMCO5: TMCO5 family
Probab=76.16 E-value=1.3e+02 Score=33.18 Aligned_cols=16 Identities=38% Similarity=0.652 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhHHHHH
Q 001598 666 AMHRLEEKVSDMETEN 681 (1047)
Q Consensus 666 ~~~~Le~~l~~Le~E~ 681 (1047)
.+..+++.+.+++++.
T Consensus 152 ~i~klkE~L~rmE~ek 167 (280)
T PF14992_consen 152 EIKKLKEKLRRMEEEK 167 (280)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 321
>PF15456 Uds1: Up-regulated During Septation
Probab=75.96 E-value=46 Score=32.13 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEER-----------LKQALEAESKIVQLKTAMHRLEEKVS 675 (1047)
Q Consensus 607 ~~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~-----------~~~l~~~e~~l~~l~~~~~~Le~~l~ 675 (1047)
..+++++|.+|...|...++.++.++. ++.++.++-.....+ ...+.+.++.+......++++..++.
T Consensus 20 s~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~ 98 (124)
T PF15456_consen 20 SFEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELW 98 (124)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHH
Confidence 367889999999999999999998888 665555543333222 01123333344444444444444444
Q ss_pred hHHHHHHHHHH
Q 001598 676 DMETENQILRQ 686 (1047)
Q Consensus 676 ~Le~E~~~L~q 686 (1047)
+++......++
T Consensus 99 ~le~R~~~~~~ 109 (124)
T PF15456_consen 99 KLENRLAEVRQ 109 (124)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 322
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=75.88 E-value=1.1e+02 Score=37.33 Aligned_cols=12 Identities=25% Similarity=0.503 Sum_probs=8.2
Q ss_pred HHHHHHHhcccc
Q 001598 775 FTIYKCLLHWKS 786 (1047)
Q Consensus 775 ~il~~c~~~~~~ 786 (1047)
-+.|.|+.||+.
T Consensus 340 ~l~~~el~~~~e 351 (511)
T PF09787_consen 340 RLYYQELYHYRE 351 (511)
T ss_pred HHHHHHHHHHHH
Confidence 367777777764
No 323
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=75.67 E-value=32 Score=37.43 Aligned_cols=44 Identities=14% Similarity=0.242 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 644 KISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 644 ~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
.+.+....+..++|+.+.....++..|+.+++.|+.+|-.|-.+
T Consensus 86 sQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEK 129 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEK 129 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666666666666777777777777666554
No 324
>smart00338 BRLZ basic region leucin zipper.
Probab=75.52 E-value=30 Score=29.08 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001598 642 TSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1047)
Q Consensus 642 l~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~ 688 (1047)
..+........+.+++.++..++.++..|..++..|+.++..|+++.
T Consensus 17 A~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 17 ARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344445556677788888888888888888888888888887653
No 325
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=75.11 E-value=3.3 Score=38.20 Aligned_cols=73 Identities=15% Similarity=0.230 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 609 AVVEELTSENEKLKTLVSSLEKKI-DETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 609 ~~~~~L~~e~~~L~~~l~~l~~~l-~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
.....++..+..++.++++|...+ ++..+..+..+++...+..++. .++..+.+.+..+..++.++..|+..
T Consensus 8 ~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~-------~le~~l~e~~~~l~~lq~qL~~LK~v 80 (100)
T PF06428_consen 8 ERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNE-------QLEKQLKEKEALLESLQAQLKELKTV 80 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHCTTHHCHCCCHCTSSSSHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666665 4444555555544443333333 34444444444444555555555544
Q ss_pred c
Q 001598 688 S 688 (1047)
Q Consensus 688 ~ 688 (1047)
.
T Consensus 81 ~ 81 (100)
T PF06428_consen 81 M 81 (100)
T ss_dssp T
T ss_pred H
Confidence 3
No 326
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=75.06 E-value=2.1e+02 Score=34.96 Aligned_cols=7 Identities=29% Similarity=1.113 Sum_probs=4.4
Q ss_pred ccceeee
Q 001598 352 GKTKVFL 358 (1047)
Q Consensus 352 G~TkVFl 358 (1047)
|+|+.|+
T Consensus 100 GrSr~~I 106 (557)
T COG0497 100 GRSRAFI 106 (557)
T ss_pred CceeEEE
Confidence 5666666
No 327
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=74.88 E-value=1.2e+02 Score=32.25 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 558 KTQENAKLQSALQEMQLQFKESKEK 582 (1047)
Q Consensus 558 ~~~e~~~L~~~l~~le~~l~~~~~~ 582 (1047)
.......++.++.+.+..+..|...
T Consensus 49 ~~a~~~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 49 VMANQKRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666666666666554
No 328
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=74.61 E-value=1.4e+02 Score=32.83 Aligned_cols=14 Identities=29% Similarity=0.641 Sum_probs=11.3
Q ss_pred hCCCCccChHHHHH
Q 001598 304 AGYPTRKPFDEFVD 317 (1047)
Q Consensus 304 ~Gyp~r~~~~~F~~ 317 (1047)
-|||--++...|..
T Consensus 3 LGypr~iSmenFrt 16 (267)
T PF10234_consen 3 LGYPRLISMENFRT 16 (267)
T ss_pred CCCCCCCcHHHcCC
Confidence 49999999888753
No 329
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=74.57 E-value=74 Score=29.93 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 655 ~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
.++.+++.++..+..++.++..+++++..++++
T Consensus 71 ~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 71 ELKEKKETLELRVKTLQRQEERLREQLKELQEK 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566666666666666555543
No 330
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=74.40 E-value=3.1e+02 Score=36.70 Aligned_cols=29 Identities=10% Similarity=0.194 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETE 636 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele 636 (1047)
...+..+..++..++..+......+.+.+
T Consensus 776 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~ 804 (1047)
T PRK10246 776 EETLTQLEQLKQNLENQRQQAQTLVTQTA 804 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666665555555444443
No 331
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=74.27 E-value=32 Score=28.84 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 646 SEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 646 ~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
.......+.+++..+..|+.+...|...+..|+.++..|..+
T Consensus 21 R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 21 RQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444556666666666666666666666666666666543
No 332
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=74.15 E-value=1.1e+02 Score=31.46 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 609 AVVEELTSENEKLKTLVSSLEKKID 633 (1047)
Q Consensus 609 ~~~~~L~~e~~~L~~~l~~l~~~l~ 633 (1047)
...+.+..+..+|+.+++.++.++.
T Consensus 73 ~~~~~lr~~~e~L~~eie~l~~~L~ 97 (177)
T PF07798_consen 73 SEFAELRSENEKLQREIEKLRQELR 97 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555443
No 333
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=73.80 E-value=45 Score=35.74 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001598 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1047)
Q Consensus 610 ~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~ 688 (1047)
-...|+..+..++..+..+++.+++....+...+.+ ...+|..++.+..++-..+-+++..+..|+.|+..++++.
T Consensus 137 ~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~---~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~ 212 (221)
T PF05700_consen 137 HNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEE---AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKA 212 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555554443333322 3344556666777676777777777777777776666644
No 334
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=73.65 E-value=53 Score=34.25 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 001598 665 TAMHRLEEKVSDMETENQILR 685 (1047)
Q Consensus 665 ~~~~~Le~~l~~Le~E~~~L~ 685 (1047)
.++.+++..+..+++++...+
T Consensus 159 ~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 159 KEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 335
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=73.51 E-value=1.3e+02 Score=34.34 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001598 661 VQLKTAMHRLEEKVSDMETENQILRQQS 688 (1047)
Q Consensus 661 ~~l~~~~~~Le~~l~~Le~E~~~L~qq~ 688 (1047)
..++++.+.|..+++..+.|++.++.|.
T Consensus 352 aaLrkerd~L~keLeekkreleql~~q~ 379 (442)
T PF06637_consen 352 AALRKERDSLAKELEEKKRELEQLKMQL 379 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667777777777777666654
No 336
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=73.37 E-value=1.2e+02 Score=31.58 Aligned_cols=10 Identities=30% Similarity=0.348 Sum_probs=3.6
Q ss_pred HhHHHHHHHH
Q 001598 675 SDMETENQIL 684 (1047)
Q Consensus 675 ~~Le~E~~~L 684 (1047)
..|+..+..|
T Consensus 173 ~~lk~~~~ql 182 (189)
T PF10211_consen 173 DFLKKQNQQL 182 (189)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 337
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=73.04 E-value=19 Score=30.83 Aligned_cols=24 Identities=13% Similarity=0.412 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 663 LKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 663 l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
|.+.+.+...+|..|+.++..|..
T Consensus 23 Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 23 LNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444433
No 338
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=72.79 E-value=15 Score=40.32 Aligned_cols=72 Identities=21% Similarity=0.288 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001598 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1047)
Q Consensus 611 ~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~ 682 (1047)
..+|..|+..|--+++-|+..+.+.+..+++-.++++++.++++.....++-|+...++|++.|+.-.+=++
T Consensus 135 naQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdelie 206 (405)
T KOG2010|consen 135 NAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIE 206 (405)
T ss_pred HHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777788888999999999999999999999999999999999999999999999988877554443
No 339
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=72.52 E-value=7.1 Score=43.62 Aligned_cols=76 Identities=16% Similarity=0.243 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 612 ~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
..+...+..++..+.++...+..+...+.........+...+..+.-.+..++..+..+.-.|..|+..++.|+.-
T Consensus 80 ~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~ 155 (326)
T PF04582_consen 80 NSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESG 155 (326)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcC
Confidence 3344444444445555555555544444444555555555555666666677777777777777777777777763
No 340
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=72.31 E-value=94 Score=30.53 Aligned_cols=8 Identities=50% Similarity=0.563 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 001598 568 ALQEMQLQ 575 (1047)
Q Consensus 568 ~l~~le~~ 575 (1047)
.++.++.+
T Consensus 14 ~~~~l~~~ 21 (140)
T PRK03947 14 QLQALQAQ 21 (140)
T ss_pred HHHHHHHH
Confidence 33333333
No 341
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=72.30 E-value=33 Score=40.39 Aligned_cols=77 Identities=18% Similarity=0.212 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001598 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERL-KQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1047)
Q Consensus 609 ~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~-~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~ 685 (1047)
.++.+++.+...+..+.+.+.++++.++++...+........ .+-.+++.+...++.+..+++..+..|+..++.+.
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~ 143 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVL 143 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344444444444444444444445444444444433333322 22344555555666677777777777777765543
No 342
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=72.27 E-value=37 Score=34.05 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001598 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA--LEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1047)
Q Consensus 609 ~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l--~~~e~~l~~l~~~~~~Le~~l~~Le~E~ 681 (1047)
+....|..++..|+..+.++.......+. +..++...| +++++++..|.+++...++.+.++++-.
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~vea-------Eik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~ 146 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEA-------EIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGT 146 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444455555554444444444444433 333333332 4555566666666666666666655544
No 343
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=72.27 E-value=1.7e+02 Score=32.62 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001598 656 AESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1047)
Q Consensus 656 ~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~ 685 (1047)
+..++.+.......+.+.+..++.++..+.
T Consensus 212 ~he~~ve~~~~~~e~~ee~~~~~~elre~~ 241 (294)
T COG1340 212 LHEEFVELSKKIDELHEEFRNLQNELRELE 241 (294)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444443333
No 344
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=72.24 E-value=74 Score=33.20 Aligned_cols=19 Identities=5% Similarity=0.165 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 001598 663 LKTAMHRLEEKVSDMETEN 681 (1047)
Q Consensus 663 l~~~~~~Le~~l~~Le~E~ 681 (1047)
+++++.-|+.....|+.++
T Consensus 168 ~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 168 HQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444555555554444
No 345
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=72.17 E-value=59 Score=34.34 Aligned_cols=57 Identities=18% Similarity=0.193 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 631 KIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 631 ~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
+.++++.++.++..+.+.+..+.+.++.+-..|-.+..+|...+..+.+++..++++
T Consensus 91 Rm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~ 147 (292)
T KOG4005|consen 91 RMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQ 147 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHH
Confidence 344455555555555555555555555555566666666666666677777666654
No 346
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=72.11 E-value=48 Score=28.12 Aligned_cols=26 Identities=12% Similarity=0.005 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 634 ETEKKFEETSKISEERLKQALEAESK 659 (1047)
Q Consensus 634 ele~~~~el~~~~~e~~~~l~~~e~~ 659 (1047)
.+..+...+..+...+..+.+.+..+
T Consensus 25 ~Lr~q~~~~~~ER~~L~ekne~Ar~r 50 (65)
T TIGR02449 25 LLRAQEKTWREERAQLLEKNEQARQK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 347
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=71.45 E-value=29 Score=40.97 Aligned_cols=59 Identities=20% Similarity=0.184 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001598 630 KKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1047)
Q Consensus 630 ~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~ 688 (1047)
.++.+++.+..++..+.++...++++++..+.+.+.++..|+..|+.-+...++|+++.
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 33444445555555555555555555555555566666666666766666666666643
No 348
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=71.14 E-value=86 Score=28.86 Aligned_cols=11 Identities=9% Similarity=0.223 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 001598 616 SENEKLKTLVS 626 (1047)
Q Consensus 616 ~e~~~L~~~l~ 626 (1047)
..+..++.++.
T Consensus 19 ~q~~~l~~~~~ 29 (106)
T PF01920_consen 19 QQIQQLERQLR 29 (106)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 349
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=71.04 E-value=1.9e+02 Score=32.74 Aligned_cols=79 Identities=13% Similarity=0.269 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
.++..+++..+.+--......+..++.+.+.+..++++...+..+-+.....+.++-++...+..++..++..++.|+.
T Consensus 222 ~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~ 300 (309)
T PF09728_consen 222 SEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEK 300 (309)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555566666666667777777777777777776666666666666666666666666666655543
No 350
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=71.02 E-value=2.5e+02 Score=34.22 Aligned_cols=27 Identities=11% Similarity=0.302 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 660 IVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 660 l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
+..|+.++..+..++...=.++...|+
T Consensus 344 ~~~Le~~~~~l~~~~~~~A~~Ls~~R~ 370 (557)
T COG0497 344 LEALEKEVKKLKAELLEAAEALSAIRK 370 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443333
No 351
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=70.99 E-value=2.3e+02 Score=33.84 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001598 655 EAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1047)
Q Consensus 655 ~~e~~l~~l~~~~~~Le~~l~~Le~E~~ 682 (1047)
++..++++.+.++..++.++...+..++
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666666665554
No 352
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=70.94 E-value=64 Score=31.70 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001598 659 KIVQLKTAMHRLEEKVSDMETENQIL 684 (1047)
Q Consensus 659 ~l~~l~~~~~~Le~~l~~Le~E~~~L 684 (1047)
+++.+++.+..++..+..++++++.+
T Consensus 102 ~~~~l~~~~~~l~~~l~~~~~~~~~~ 127 (140)
T PRK03947 102 RKEELEKALEKLEEALQKLASRIAQL 127 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444433333333
No 353
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=70.24 E-value=1.3e+02 Score=34.85 Aligned_cols=76 Identities=18% Similarity=0.272 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHH
Q 001598 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAES-------KIVQLKTAMHRLEEKVSDMETENQI 683 (1047)
Q Consensus 611 ~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~-------~l~~l~~~~~~Le~~l~~Le~E~~~ 683 (1047)
.+++..+..+|.+++.++++.-.++...+.+++.+.+++.++-...-. +.-..++++..++.++.--+..++.
T Consensus 185 ~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldk 264 (447)
T KOG2751|consen 185 LKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDK 264 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555554555554444444433333222 2334455555555555554445555
Q ss_pred HHH
Q 001598 684 LRQ 686 (1047)
Q Consensus 684 L~q 686 (1047)
|+.
T Consensus 265 L~k 267 (447)
T KOG2751|consen 265 LRK 267 (447)
T ss_pred HHh
Confidence 554
No 354
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=69.95 E-value=1.6e+02 Score=34.19 Aligned_cols=27 Identities=11% Similarity=0.297 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001598 655 EAESKIVQLKTAMHRLEEKVSDMETEN 681 (1047)
Q Consensus 655 ~~e~~l~~l~~~~~~Le~~l~~Le~E~ 681 (1047)
+.+..+..++.+..--+.+++.|.+.|
T Consensus 243 ~~~del~Sle~q~~~s~~qldkL~ktN 269 (447)
T KOG2751|consen 243 EHQDELDSLEAQIEYSQAQLDKLRKTN 269 (447)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444444444444444455555544
No 355
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=69.87 E-value=1.2e+02 Score=29.90 Aligned_cols=30 Identities=30% Similarity=0.310 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001598 655 EAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1047)
Q Consensus 655 ~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L 684 (1047)
.++..+++|---+..+++++.+.+..+..|
T Consensus 81 ~~q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 81 EAQSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHHHc
Confidence 344444555555555566666555555443
No 356
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=69.76 E-value=3.1e+02 Score=34.67 Aligned_cols=31 Identities=35% Similarity=0.491 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEK 637 (1047)
Q Consensus 607 ~~~~~~~L~~e~~~L~~~l~~l~~~l~ele~ 637 (1047)
...+++++.+++++++..+...+++++-++.
T Consensus 668 ~~~q~eel~Ke~kElq~rL~~q~KkiDh~ER 698 (988)
T KOG2072|consen 668 KARQIEELEKERKELQSRLQYQEKKIDHLER 698 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 4667888999999999999999988886554
No 357
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=69.72 E-value=3.6e+02 Score=35.47 Aligned_cols=18 Identities=44% Similarity=0.375 Sum_probs=9.9
Q ss_pred CCCCCCchhhHHhhchhH
Q 001598 995 RECCTFSNGEYVKAGLAE 1012 (1047)
Q Consensus 995 ~~~cs~s~g~qIr~nls~ 1012 (1047)
++.-+-|-|..+-.+|+.
T Consensus 811 r~~~~LSGGE~~~~sLal 828 (908)
T COG0419 811 RPIKTLSGGERFLASLAL 828 (908)
T ss_pred cccccCCchHHHHHHHHH
Confidence 344555566666655553
No 358
>PTZ00121 MAEBL; Provisional
Probab=69.62 E-value=4e+02 Score=35.97 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=20.0
Q ss_pred HHHHHHhcCCCHHHH---HHHHHHHHHhhhHHHHHhhhh
Q 001598 958 LLSTLKQNFVPPVLV---QKIFTQTFSYINVQLFNSLLL 993 (1047)
Q Consensus 958 ~~~~l~~~~v~~~l~---~Q~f~qlf~fin~~lfN~Ll~ 993 (1047)
++++|+.-+-+|... .+=|+-+.||-++-+|=-||+
T Consensus 1993 YynCmk~EF~dp~Y~CF~K~~fS~~~YfAggGii~ilLl 2031 (2084)
T PTZ00121 1993 YYDCMKEEFADKDYKCFKKKEFSNMAYFAGAGIVLILLF 2031 (2084)
T ss_pred HHhhHHhhccCcchhhhcccCcccceeeccccHHHHHHH
Confidence 566666655555542 344555666666655555544
No 359
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=69.59 E-value=23 Score=31.35 Aligned_cols=40 Identities=28% Similarity=0.470 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 647 EERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 647 ~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
+++..++.+++..+..|-..+...+++..+|+.||+.|++
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~ 58 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQ 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555666666666666666665
No 360
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=69.24 E-value=1.7e+02 Score=31.58 Aligned_cols=17 Identities=24% Similarity=0.579 Sum_probs=12.3
Q ss_pred hCCCCccChHHHHHHHh
Q 001598 304 AGYPTRKPFDEFVDRFG 320 (1047)
Q Consensus 304 ~Gyp~r~~~~~F~~ry~ 320 (1047)
-.||+|-.+++|+..-.
T Consensus 122 idfpsrhdwdd~fm~~k 138 (445)
T KOG2891|consen 122 IDFPSRHDWDDFFMDAK 138 (445)
T ss_pred CCCCcccchHHHHhhhh
Confidence 36888888888876544
No 361
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=69.02 E-value=1.8e+02 Score=31.82 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001598 558 KTQENAKLQSALQEMQLQFKE 578 (1047)
Q Consensus 558 ~~~e~~~L~~~l~~le~~l~~ 578 (1047)
+..|+.+|+.++..|++.+.+
T Consensus 87 RetEI~eLksQL~RMrEDWIE 107 (305)
T PF15290_consen 87 RETEIDELKSQLARMREDWIE 107 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666655543
No 362
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=68.99 E-value=2.3e+02 Score=32.85 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001598 529 AKNKLEKQVEELTWRLQLEK 548 (1047)
Q Consensus 529 ~~~~LE~kv~el~~~l~~e~ 548 (1047)
.....|..+.++|.+|..++
T Consensus 253 ~Lq~aEqsl~dlQk~Lekar 272 (575)
T KOG4403|consen 253 GLQRAEQSLEDLQKRLEKAR 272 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456777888888887443
No 363
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=68.88 E-value=1.9e+02 Score=31.85 Aligned_cols=65 Identities=15% Similarity=0.280 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001598 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSD 676 (1047)
Q Consensus 612 ~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~ 676 (1047)
..+...+......+.+++..+.+......+...-+......+++.+.+..++++......+.|..
T Consensus 181 ~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~ 245 (264)
T PF06008_consen 181 EAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKE 245 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455554444444444444444444444455555555555444444444443
No 364
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=68.59 E-value=1.5e+02 Score=30.56 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 560 QENAKLQSALQEMQLQFKESKEKL 583 (1047)
Q Consensus 560 ~e~~~L~~~l~~le~~l~~~~~~l 583 (1047)
.+...++.+.+.++.+++.++.++
T Consensus 73 ~~~~~lr~~~e~L~~eie~l~~~L 96 (177)
T PF07798_consen 73 SEFAELRSENEKLQREIEKLRQEL 96 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 365
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=68.36 E-value=57 Score=33.21 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKV 674 (1047)
Q Consensus 612 ~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l 674 (1047)
.....-...|+++++....+...+.+.....+..+++.++.-.++..++..+.+.++.++.++
T Consensus 77 ~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el 139 (203)
T KOG3433|consen 77 CDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWEL 139 (203)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555444444444444444444443433333333333
No 366
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=68.36 E-value=1.3e+02 Score=31.28 Aligned_cols=16 Identities=6% Similarity=0.133 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 001598 661 VQLKTAMHRLEEKVSD 676 (1047)
Q Consensus 661 ~~l~~~~~~Le~~l~~ 676 (1047)
....+++-.|+.-+.+
T Consensus 152 nrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 152 NRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHhhHHHHHHHHHH
Confidence 3344444444444444
No 367
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=68.22 E-value=92 Score=40.03 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=7.4
Q ss_pred eecc-ceeeeccccc
Q 001598 350 QIGK-TKVFLRAGQM 363 (1047)
Q Consensus 350 ~iG~-TkVFlr~~~~ 363 (1047)
.+|- .+||.+-|.-
T Consensus 367 ~i~~~~~i~~~ig~~ 381 (782)
T PRK00409 367 EIPVFKEIFADIGDE 381 (782)
T ss_pred cccccceEEEecCCc
Confidence 4554 4666655443
No 368
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=68.01 E-value=39 Score=30.51 Aligned_cols=33 Identities=33% Similarity=0.449 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 527 QAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKT 559 (1047)
Q Consensus 527 ~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~ 559 (1047)
......||..|.+|+.+|+.|..++..++.+..
T Consensus 7 ~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~ 39 (88)
T PF14389_consen 7 HERRSALEQEVAELQKQLQEEQDLRRALEKALG 39 (88)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345567999999999999999999998887655
No 369
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=67.95 E-value=2.4e+02 Score=32.70 Aligned_cols=20 Identities=15% Similarity=0.451 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001598 561 ENAKLQSALQEMQLQFKESK 580 (1047)
Q Consensus 561 e~~~L~~~l~~le~~l~~~~ 580 (1047)
|+....++++.+..++++++
T Consensus 303 e~e~~rkelE~lR~~L~kAE 322 (575)
T KOG4403|consen 303 ENETSRKELEQLRVALEKAE 322 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33333345555555544443
No 370
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=67.45 E-value=1.3e+02 Score=30.02 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 001598 662 QLKTAMHRLEEKVSDMETENQILR 685 (1047)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~E~~~L~ 685 (1047)
.++..+..|...+..++.++..+.
T Consensus 112 ~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 112 KLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444333
No 371
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=67.06 E-value=20 Score=32.41 Aligned_cols=69 Identities=20% Similarity=0.188 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 619 EKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA----LEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 619 ~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l----~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
..|++++..|++.+.+...-...+++.......-+ ..+-.+..++-.++..++.+|..|+..+..|..+
T Consensus 11 ~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~ 83 (88)
T PF14389_consen 11 SALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQ 83 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443332211111 1233345566667777777777777777666554
No 372
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=66.93 E-value=4 Score=37.71 Aligned_cols=69 Identities=23% Similarity=0.321 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001598 612 EELTSENEKLKTLV-SSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1047)
Q Consensus 612 ~~L~~e~~~L~~~l-~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E 680 (1047)
..++.|+..|-..| ++..+.+...+++...++.....+.+++.+.+..++.++.++..|+.-+..+..+
T Consensus 18 ~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~~~~~ 87 (100)
T PF06428_consen 18 EQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMESMESE 87 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 34444444444444 4455555555555555555555555555555555555555555555444444333
No 373
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.80 E-value=2.8e+02 Score=33.18 Aligned_cols=15 Identities=0% Similarity=0.118 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 001598 562 NAKLQSALQEMQLQF 576 (1047)
Q Consensus 562 ~~~L~~~l~~le~~l 576 (1047)
++..+++.++|...+
T Consensus 333 Ie~~~ke~kdLkEkv 347 (654)
T KOG4809|consen 333 IESFRKENKDLKEKV 347 (654)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 374
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=66.78 E-value=1.5e+02 Score=37.29 Aligned_cols=69 Identities=16% Similarity=0.217 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHH
Q 001598 618 NEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLE---EKVSDMETENQILRQ 686 (1047)
Q Consensus 618 ~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le---~~l~~Le~E~~~L~q 686 (1047)
+..|+..+..++..+.+++.....+.++..+....+......+......+.+-. +..++|-.++..|+.
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkG 314 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKG 314 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444444444444444444444444333333333333333333322222 444455555555554
No 375
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=66.74 E-value=2e+02 Score=31.50 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001598 624 LVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSD 676 (1047)
Q Consensus 624 ~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~ 676 (1047)
+++.+++++.+.+++..+++....+..++|.+++.+-..+...+..+..++.+
T Consensus 208 ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 208 ELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444444444444433
No 376
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=66.58 E-value=23 Score=36.72 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001598 522 ETGALQAAKNKLEKQVEELTW 542 (1047)
Q Consensus 522 ~~~~l~~~~~~LE~kv~el~~ 542 (1047)
|...|+.++..||.++...+.
T Consensus 97 EevrLkrELa~Le~~l~~~~~ 117 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQ 117 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555443
No 377
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=66.47 E-value=57 Score=39.86 Aligned_cols=81 Identities=19% Similarity=0.177 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKIS------------------EERLKQALEAESKIVQLKTAMHR 669 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~------------------~e~~~~l~~~e~~l~~l~~~~~~ 669 (1047)
.+.+.+|++++..++.++..++.+++.++.+++-++.-. .++.+-+.-..+++.++......
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDRE 149 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666555555544443332211 12222223333444455555555
Q ss_pred HHHHHHhHHHHHHHHHHhc
Q 001598 670 LEEKVSDMETENQILRQQS 688 (1047)
Q Consensus 670 Le~~l~~Le~E~~~L~qq~ 688 (1047)
++.+++.++++++.|+++.
T Consensus 150 ~~~~~~~~~~~l~~l~~~l 168 (525)
T TIGR02231 150 AERRIRELEKQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555543
No 378
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=66.42 E-value=79 Score=35.79 Aligned_cols=53 Identities=23% Similarity=0.235 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQL 663 (1047)
Q Consensus 611 ~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l 663 (1047)
.++|+++-++|++.......+++++.+-...--.......++++++...+...
T Consensus 6 W~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 6 WEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555544444444444444444444444433
No 379
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=66.40 E-value=49 Score=30.88 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 001598 662 QLKTAMHRLEEKVSDMETENQIL 684 (1047)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~E~~~L 684 (1047)
.+..+...+.+++..++.+...+
T Consensus 71 ~l~~e~~~lk~~i~~le~~~~~~ 93 (108)
T PF02403_consen 71 ELKAEVKELKEEIKELEEQLKEL 93 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444333
No 380
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=66.27 E-value=44 Score=33.77 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISE 647 (1047)
Q Consensus 610 ~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~ 647 (1047)
-++.+...+..|+..+....+.++.+++++...+..++
T Consensus 21 ~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le 58 (160)
T PF13094_consen 21 DYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALE 58 (160)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666677777766666666655555554444433
No 381
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=65.95 E-value=3.1e+02 Score=33.24 Aligned_cols=62 Identities=11% Similarity=0.155 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEE 672 (1047)
Q Consensus 611 ~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~ 672 (1047)
...++.++..|.+++++...++....+...+++.++.+....+.......+..+.++.++++
T Consensus 416 ~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~ 477 (607)
T KOG0240|consen 416 EDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQE 477 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555444444444444443333333333333333333333333
No 382
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=65.90 E-value=54 Score=30.71 Aligned_cols=12 Identities=8% Similarity=0.401 Sum_probs=4.3
Q ss_pred HHHHHHHHHHhH
Q 001598 666 AMHRLEEKVSDM 677 (1047)
Q Consensus 666 ~~~~Le~~l~~L 677 (1047)
++..++.+++.+
T Consensus 80 ~~~~l~~~l~~v 91 (106)
T PF10805_consen 80 ELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 383
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=65.72 E-value=3.1e+02 Score=33.17 Aligned_cols=13 Identities=8% Similarity=0.253 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 001598 567 SALQEMQLQFKES 579 (1047)
Q Consensus 567 ~~l~~le~~l~~~ 579 (1047)
.++.+++.++..+
T Consensus 254 ~~l~~l~~~l~~l 266 (498)
T TIGR03007 254 GRIEALEKQLDAL 266 (498)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 384
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=65.62 E-value=27 Score=40.12 Aligned_cols=74 Identities=19% Similarity=0.248 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 613 ~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
..+.++...+..+.+++.++..++.++.+..++..+++.+++..+.+++..+.-+..|.++..+=.+.+..+..
T Consensus 232 ~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~ 305 (344)
T PF12777_consen 232 EAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEE 305 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHH
Confidence 33444444444444444444444444444444444454454444444444444444444443333333344433
No 385
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.59 E-value=7.7 Score=47.10 Aligned_cols=23 Identities=57% Similarity=0.729 Sum_probs=14.7
Q ss_pred cchhhhhHHHHHHHHHHHHHHHH
Q 001598 421 RREASCLRIQRDLRMYLAKKAYK 443 (1047)
Q Consensus 421 r~~~aA~~IQ~~~R~~~~Rk~y~ 443 (1047)
|+++||+.||++||+|.+|++|+
T Consensus 28 rr~~aa~~iq~~lrsyl~Rkk~~ 50 (1096)
T KOG4427|consen 28 RREAAALFIQRVLRSYLVRKKAQ 50 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666654
No 386
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=65.40 E-value=88 Score=40.09 Aligned_cols=10 Identities=10% Similarity=0.232 Sum_probs=4.5
Q ss_pred ccchhhhcch
Q 001598 197 TELFLDKNKD 206 (1047)
Q Consensus 197 ~~~fl~kN~d 206 (1047)
...+++-|..
T Consensus 221 p~~~~~ln~~ 230 (771)
T TIGR01069 221 PQAIVKLNNK 230 (771)
T ss_pred cHHHHHHHHH
Confidence 3335555543
No 387
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=64.90 E-value=2.7e+02 Score=32.30 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 516 LKMAARETGALQAAKNKLEKQVEELT 541 (1047)
Q Consensus 516 l~~~a~~~~~l~~~~~~LE~kv~el~ 541 (1047)
+...+.+...|...+..||..+..+.
T Consensus 93 le~l~~E~~~L~~~k~rle~~L~~~~ 118 (421)
T KOG2685|consen 93 LEDLAAEIDDLLHEKRRLERALNALA 118 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444455555555555555554443
No 388
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=64.52 E-value=3.5e+02 Score=33.46 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=11.3
Q ss_pred HHHHHHHhhhccCCCCCCcchHHHH
Q 001598 753 VDALINCVAKNLGYCNGKPVAAFTI 777 (1047)
Q Consensus 753 ~~~Ll~~i~~~~~~~~~~p~pA~il 777 (1047)
.+..|..|.+... ..|.|+++-+.
T Consensus 449 v~~~l~~l~~~a~-~~Gv~s~~~L~ 472 (582)
T PF09731_consen 449 VDAALSSLPPEAA-QRGVPSEAQLR 472 (582)
T ss_pred HHHHHHhcCHHHh-hCCCCCHHHHH
Confidence 4455544443322 23666665443
No 389
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=64.22 E-value=3.2e+02 Score=32.86 Aligned_cols=66 Identities=14% Similarity=0.160 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001598 620 KLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1047)
Q Consensus 620 ~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~ 685 (1047)
.-...++++-..+...+.+..-...+.+.+..++..++.....+.+++..+...+..|++|+...+
T Consensus 417 ~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr 482 (518)
T PF10212_consen 417 YYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTR 482 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555666666666666666666666666666666666666665544
No 390
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=63.77 E-value=3.6e+02 Score=33.29 Aligned_cols=16 Identities=6% Similarity=0.167 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 001598 624 LVSSLEKKIDETEKKF 639 (1047)
Q Consensus 624 ~l~~l~~~l~ele~~~ 639 (1047)
.++++....+++++++
T Consensus 323 s~e~l~~~~~~l~~eL 338 (563)
T TIGR00634 323 SVEEVLEYAEKIKEEL 338 (563)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3344443333333333
No 391
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=63.69 E-value=1.8e+02 Score=30.19 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 001598 563 AKLQSALQEMQLQFKE 578 (1047)
Q Consensus 563 ~~L~~~l~~le~~l~~ 578 (1047)
.+|+..+.+.+..+.+
T Consensus 19 ~~LQ~KV~qYr~rc~e 34 (182)
T PF15035_consen 19 QRLQAKVLQYRKRCAE 34 (182)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 392
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=63.63 E-value=2.9e+02 Score=32.12 Aligned_cols=29 Identities=10% Similarity=0.168 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001598 654 LEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1047)
Q Consensus 654 ~~~e~~l~~l~~~~~~Le~~l~~Le~E~~ 682 (1047)
..++.++.+.++.+..|...-.+|+.++.
T Consensus 361 ~~L~~kL~eA~~~l~~L~~~~~rLe~di~ 389 (421)
T KOG2685|consen 361 AALKEKLDEAEDSLKLLVNHRARLERDIA 389 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 393
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=63.13 E-value=1.7e+02 Score=29.19 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEE 648 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e 648 (1047)
.+.++-+.+.+++|+..+..++..++++.+....+..+...
T Consensus 93 ~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~ 133 (145)
T COG1730 93 DEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQ 133 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555554444443
No 394
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=62.90 E-value=61 Score=31.14 Aligned_cols=66 Identities=18% Similarity=0.185 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 621 LKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 621 L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
|+-.++++-.++.++++.......++.+...--+.++..++.|..+...|++-+.+.++-+..|+.
T Consensus 4 LeP~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLql 69 (134)
T PF15233_consen 4 LEPQIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQL 69 (134)
T ss_pred ccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555554445555555555555666666667777777777766666666555554
No 395
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=62.85 E-value=39 Score=28.96 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 001598 659 KIVQLKTAMHRLEEKVSD 676 (1047)
Q Consensus 659 ~l~~l~~~~~~Le~~l~~ 676 (1047)
.++.++..+..|.+++..
T Consensus 33 ~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 33 QIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 396
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=62.18 E-value=2.7e+02 Score=31.42 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 001598 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1047)
Q Consensus 657 e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~~ 689 (1047)
.+-......++..+-..+.+|+.|+..++....
T Consensus 236 Ne~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e 268 (309)
T PF09728_consen 236 NEVFETFKKEMEKMSKKIKKLEKENQTWKSKWE 268 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456677777788888888888887776553
No 397
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=62.15 E-value=15 Score=42.50 Aligned_cols=15 Identities=27% Similarity=0.466 Sum_probs=5.5
Q ss_pred HHHHHHhHHHHHHHH
Q 001598 670 LEEKVSDMETENQIL 684 (1047)
Q Consensus 670 Le~~l~~Le~E~~~L 684 (1047)
++..+..+++.+..|
T Consensus 170 ~~k~i~~l~~kl~Dl 184 (370)
T PF02994_consen 170 LEKRIKKLEDKLDDL 184 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 398
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=61.37 E-value=33 Score=40.51 Aligned_cols=50 Identities=14% Similarity=0.231 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQL 663 (1047)
Q Consensus 614 L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l 663 (1047)
++...++|..++++...+++++++.+...+.++..++..+++++..++++
T Consensus 98 le~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 98 LEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 33444444445555555555555555444445554555555555444433
No 399
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=61.33 E-value=3.2e+02 Score=31.93 Aligned_cols=18 Identities=22% Similarity=0.565 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001598 524 GALQAAKNKLEKQVEELT 541 (1047)
Q Consensus 524 ~~l~~~~~~LE~kv~el~ 541 (1047)
..+++....|+.+++.|.
T Consensus 222 ~eik~~~~~L~~~~e~Lk 239 (395)
T PF10267_consen 222 REIKESQSRLEESIEKLK 239 (395)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 400
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=61.19 E-value=1.3e+02 Score=28.67 Aligned_cols=31 Identities=13% Similarity=0.379 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 656 ~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
++++++.++..+..++..+..++.+++.++.
T Consensus 92 l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 92 LKKRLETLEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555444
No 401
>PLN02678 seryl-tRNA synthetase
Probab=60.55 E-value=55 Score=38.89 Aligned_cols=80 Identities=18% Similarity=0.110 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
-+++-.+..+..++..++++++.+.....+++..+.+..+ +..++.++...+.+++..++.++..+++++..+-..
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~----~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~ 107 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKE----DATELIAETKELKKEITEKEAEVQEAKAALDAKLKT 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667777777777777777777777777665432221 223344455566677777777777777777665554
Q ss_pred cccc
Q 001598 688 SLLS 691 (1047)
Q Consensus 688 ~~~~ 691 (1047)
..+.
T Consensus 108 iPNi 111 (448)
T PLN02678 108 IGNL 111 (448)
T ss_pred CCCC
Confidence 4433
No 402
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=60.47 E-value=2.9e+02 Score=31.06 Aligned_cols=29 Identities=14% Similarity=0.312 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 513 LRKLKMAARETGALQAAKNKLEKQVEELT 541 (1047)
Q Consensus 513 l~~l~~~a~~~~~l~~~~~~LE~kv~el~ 541 (1047)
+.+..++.++...+-....++-.++.++.
T Consensus 40 yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms 68 (301)
T PF06120_consen 40 YQNAEQARQEAIEFADSLDELKEKLKEMS 68 (301)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhcC
Confidence 35555556666666555666666655554
No 403
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=60.07 E-value=1.2e+02 Score=29.19 Aligned_cols=40 Identities=25% Similarity=0.432 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 529 AKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKES 579 (1047)
Q Consensus 529 ~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~ 579 (1047)
.+.+||++..+|.+.++ ....|++.+..++..++...+.+
T Consensus 75 Qk~eLE~~k~~L~qqv~-----------~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 75 QKHELEKEKAELQQQVE-----------KLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666655554 34445555555555554444433
No 404
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=59.99 E-value=56 Score=38.74 Aligned_cols=78 Identities=21% Similarity=0.266 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
-+++-++..+..++..++++++.+..++.+++..+.+..+ +.+++..+...+.+++..+++++..+++++..+-..
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~----~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGE----DAEALIAEVKELKEEIKALEAELDELEAELEELLLR 102 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677778888888888888877777777766433221 223344445556666666666676666666655544
Q ss_pred cc
Q 001598 688 SL 689 (1047)
Q Consensus 688 ~~ 689 (1047)
..
T Consensus 103 iP 104 (425)
T PRK05431 103 IP 104 (425)
T ss_pred CC
Confidence 43
No 405
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.99 E-value=8.2 Score=48.09 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=21.2
Q ss_pred hccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 001598 419 SMRREASCLRIQRDLRMYLAKKAYKDMCF 447 (1047)
Q Consensus 419 ~~r~~~aA~~IQ~~~R~~~~Rk~y~~~r~ 447 (1047)
..+++.+|++||+.||||++|+.....-+
T Consensus 25 ~rk~e~~av~vQs~~Rg~~~r~~~~~~~R 53 (1001)
T KOG0942|consen 25 ERKQEKNAVKVQSFWRGFRVRHNQKLLFR 53 (1001)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888888888888887665543
No 406
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=59.93 E-value=1.2e+02 Score=33.19 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEET 642 (1047)
Q Consensus 611 ~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el 642 (1047)
+..|...+++-+..+.+-+.++.+++.++..+
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RM 101 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARM 101 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 407
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.93 E-value=2.4e+02 Score=29.94 Aligned_cols=9 Identities=11% Similarity=0.161 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 001598 621 LKTLVSSLE 629 (1047)
Q Consensus 621 L~~~l~~l~ 629 (1047)
++++++.++
T Consensus 98 ~q~elEvl~ 106 (246)
T KOG4657|consen 98 TQSELEVLR 106 (246)
T ss_pred HHHHHHHHH
Confidence 333333333
No 408
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=59.64 E-value=1.1e+02 Score=26.71 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKID 633 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ 633 (1047)
+..++.|.+|+=.|+-.+--+++.+.
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34455566666555555555555554
No 409
>PRK00736 hypothetical protein; Provisional
Probab=59.56 E-value=59 Score=27.82 Aligned_cols=10 Identities=20% Similarity=0.511 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 001598 663 LKTAMHRLEE 672 (1047)
Q Consensus 663 l~~~~~~Le~ 672 (1047)
++..+..|.+
T Consensus 38 L~~ql~~L~~ 47 (68)
T PRK00736 38 MRKKLDALTE 47 (68)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 410
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.48 E-value=3.4e+02 Score=31.62 Aligned_cols=14 Identities=43% Similarity=0.660 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 001598 531 NKLEKQVEELTWRL 544 (1047)
Q Consensus 531 ~~LE~kv~el~~~l 544 (1047)
.++|..+.+|.+.+
T Consensus 176 kqlEe~ieeL~qsl 189 (446)
T KOG4438|consen 176 KQLEENIEELNQSL 189 (446)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 411
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=58.86 E-value=3.4e+02 Score=31.45 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001598 564 KLQSALQEMQLQFKESK 580 (1047)
Q Consensus 564 ~L~~~l~~le~~l~~~~ 580 (1047)
.+.+.+...|..+..++
T Consensus 45 ai~a~~~~~E~~l~~Lq 61 (459)
T KOG0288|consen 45 AIKAKLQEKELELNRLQ 61 (459)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444333
No 412
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=58.76 E-value=62 Score=28.99 Aligned_cols=27 Identities=30% Similarity=0.560 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001598 662 QLKTAMHRLEEKVSDMETENQILRQQS 688 (1047)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~E~~~L~qq~ 688 (1047)
.+++++..+.+.+...+++++.|++.+
T Consensus 40 ~lE~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 40 SLEKELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhh
Confidence 455666666677777777777776643
No 413
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=58.75 E-value=1.4e+02 Score=27.01 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 635 TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1047)
Q Consensus 635 le~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~ 675 (1047)
++.++..+......+..+|...+..+..++.-..++...+.
T Consensus 37 ~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~ 77 (89)
T PF13747_consen 37 LEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLD 77 (89)
T ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444443333
No 414
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=58.61 E-value=2.5e+02 Score=36.17 Aligned_cols=10 Identities=10% Similarity=0.285 Sum_probs=4.3
Q ss_pred eccchhhhcc
Q 001598 196 QTELFLDKNK 205 (1047)
Q Consensus 196 ~~~~fl~kN~ 205 (1047)
.....++-|.
T Consensus 225 ep~~~~~ln~ 234 (782)
T PRK00409 225 EPQSVVELNN 234 (782)
T ss_pred EcHHHHHHHH
Confidence 3333444444
No 415
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=58.59 E-value=80 Score=37.58 Aligned_cols=52 Identities=25% Similarity=0.270 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESK 659 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~ 659 (1047)
-+++++|.-|+.-|+.+++..+.....++.++.+++.++.++..++.++..+
T Consensus 328 IakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~ 379 (832)
T KOG2077|consen 328 IAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQK 379 (832)
T ss_pred HHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777777766666666666777766666666666555443
No 416
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=58.44 E-value=1.1e+02 Score=31.24 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001598 616 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1047)
Q Consensus 616 ~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~ 685 (1047)
..+...+.-+.+|+..++...++...+.+..+......+..++.-+++..++..|+..++.++.++...+
T Consensus 74 ~a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 74 EAICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666667777777777777777777766666666666666666666666666666666666655544
No 417
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=58.13 E-value=50 Score=29.58 Aligned_cols=24 Identities=13% Similarity=0.374 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 616 SENEKLKTLVSSLEKKIDETEKKF 639 (1047)
Q Consensus 616 ~e~~~L~~~l~~l~~~l~ele~~~ 639 (1047)
.|++.+++.+.+...+++..+.++
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL 28 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRL 28 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 455555555556655555555443
No 418
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.81 E-value=13 Score=45.19 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=12.5
Q ss_pred hhhHHhhhhHhhhhhhhhhh
Q 001598 398 RRSAIHIQAACRGQLARTVY 417 (1047)
Q Consensus 398 r~a~i~iQa~~Rg~laR~~~ 417 (1047)
.+|++.||++||||++|+++
T Consensus 30 ~~aa~~iq~~lrsyl~Rkk~ 49 (1096)
T KOG4427|consen 30 EAAALFIQRVLRSYLVRKKA 49 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777666653
No 419
>PRK02793 phi X174 lysis protein; Provisional
Probab=57.60 E-value=59 Score=28.17 Aligned_cols=10 Identities=0% Similarity=0.059 Sum_probs=3.7
Q ss_pred HHHHhHHHHH
Q 001598 672 EKVSDMETEN 681 (1047)
Q Consensus 672 ~~l~~Le~E~ 681 (1047)
.+++.|.+.+
T Consensus 43 ~~l~~L~~rl 52 (72)
T PRK02793 43 DHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 420
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=57.18 E-value=3.6e+02 Score=31.16 Aligned_cols=20 Identities=35% Similarity=0.609 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001598 611 VEELTSENEKLKTLVSSLEK 630 (1047)
Q Consensus 611 ~~~L~~e~~~L~~~l~~l~~ 630 (1047)
+..|..|+..|+..+...++
T Consensus 255 i~~l~~EveRlrt~l~~Aqk 274 (552)
T KOG2129|consen 255 IDKLQAEVERLRTYLSRAQK 274 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 421
>PLN02939 transferase, transferring glycosyl groups
Probab=57.06 E-value=5.8e+02 Score=33.50 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001598 559 TQENAKLQSALQEMQLQFKES 579 (1047)
Q Consensus 559 ~~e~~~L~~~l~~le~~l~~~ 579 (1047)
..|+.-|+..++.++.++.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~ 252 (977)
T PLN02939 232 KEENMLLKDDIQFLKAELIEV 252 (977)
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 356666666677666666554
No 422
>PTZ00121 MAEBL; Provisional
Probab=57.04 E-value=6.6e+02 Score=34.15 Aligned_cols=13 Identities=8% Similarity=0.143 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 001598 951 IIDSLNTLLSTLK 963 (1047)
Q Consensus 951 il~~L~~~~~~l~ 963 (1047)
|-.....++.+-+
T Consensus 1929 v~ktRE~II~lSk 1941 (2084)
T PTZ00121 1929 AEETREEIIKISK 1941 (2084)
T ss_pred hHHHHHHHHHHHh
Confidence 3334444444433
No 423
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=57.03 E-value=1.8e+02 Score=27.85 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 611 VEELTSENEKLKTLVSSLEKKIDETEK 637 (1047)
Q Consensus 611 ~~~L~~e~~~L~~~l~~l~~~l~ele~ 637 (1047)
.+.+..+...+...+.++...+.+.+.
T Consensus 8 ~~ql~~~i~~l~~~i~~l~~~i~e~~~ 34 (126)
T TIGR00293 8 LQILQQQVESLQAQIAALRALIAELET 34 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 424
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=56.98 E-value=17 Score=36.84 Aligned_cols=20 Identities=25% Similarity=0.581 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHHHHhHHHHH
Q 001598 662 QLKTAMHRLEEKVSDMETEN 681 (1047)
Q Consensus 662 ~l~~~~~~Le~~l~~Le~E~ 681 (1047)
.|..++++|++++..|+.|+
T Consensus 28 ~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 28 NLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57777888888888888888
No 425
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=56.49 E-value=1.9e+02 Score=27.82 Aligned_cols=31 Identities=16% Similarity=0.398 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 656 ~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
++++++.+++.+..+++.+..+++++..+..
T Consensus 92 l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~ 122 (129)
T cd00584 92 LDKKIEELTKQIEKLQKELAKLKDQINTLEA 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555554443
No 426
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=56.28 E-value=1.2e+02 Score=25.38 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001598 646 SEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1047)
Q Consensus 646 ~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~ 681 (1047)
.++++.++..++.....|..++..|+..+..|..++
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444444444555555555556666666665555
No 427
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=56.04 E-value=3.1e+02 Score=30.13 Aligned_cols=113 Identities=19% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 562 NAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEE 641 (1047)
Q Consensus 562 ~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~e 641 (1047)
.+.....-...+..+.....-+.+-.....+.+|.+ ..+-..|+.+++.|-++...+...+.+++.+...
T Consensus 229 ~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI----------~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q 298 (384)
T KOG0972|consen 229 LEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKI----------ASREKSLNNQLASLMQKFRRATDTLSELREKYKQ 298 (384)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHhHHHHHHHH
Q 001598 642 TSKISEERLKQALEAESKIVQLKTAMHR-------------LEEKVSDMETENQIL 684 (1047)
Q Consensus 642 l~~~~~e~~~~l~~~e~~l~~l~~~~~~-------------Le~~l~~Le~E~~~L 684 (1047)
+.....+....|.+....++.+..++++ .+..+.+|++|...+
T Consensus 299 ~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~~m 354 (384)
T KOG0972|consen 299 ASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQTM 354 (384)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhh
No 428
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=55.99 E-value=1.6e+02 Score=26.71 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETS 643 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~ 643 (1047)
+.+++.|......|.++++..+.....++....++.
T Consensus 38 e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs 73 (89)
T PF13747_consen 38 EEEIQRLDADRSRLAQELDQAEARANRLEEANREVS 73 (89)
T ss_pred HHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334444555555555555555444444444333333
No 429
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=55.98 E-value=4.8e+02 Score=32.22 Aligned_cols=248 Identities=12% Similarity=0.122 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH------HHHHHHHHhhhHHHH
Q 001598 426 CLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKY------LARLHYMKLKKAAIT 499 (1047)
Q Consensus 426 A~~IQ~~~R~~~~Rk~y~~~r~a~i~iQ~~~Rg~~ar~~~~~~~~~~aa~~IQ~~~R~~------~~r~~~~~~~~a~v~ 499 (1047)
++.|=-+.=++.-||++.+.-...-.=-.-+.......++...+.-+-+-..+..+..| +....+-..-.....
T Consensus 7 vi~l~~~~~~~~~rk~~~k~i~~Le~~k~~l~~~pv~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ 86 (560)
T PF06160_consen 7 VIVLIIYIIGYIYRKRYYKEIDELEERKNELMNLPVADELSKVKKLNLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFE 86 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 500 TQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKES 579 (1047)
Q Consensus 500 iQ~~~R~~~ark~l~~l~~~a~~~~~l~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~ 579 (1047)
+.....++.-.+.-..+......+..+.+....+...+.++...-. ..+.++..+.+....++..+.+-
T Consensus 87 ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~-----------~nr~~i~~l~~~y~~lrk~ll~~ 155 (560)
T PF06160_consen 87 AEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEE-----------KNREEIEELKEKYRELRKELLAH 155 (560)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHhhccccccccchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 580 KEKLMKEIEVAKKEAEKVPVVQEVPVI--DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAE 657 (1047)
Q Consensus 580 ~~~l~~e~~~~~~~~ee~~~~~e~~~~--~~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e 657 (1047)
.-............+..+...-+.-.. ......+....+.+++..+.+++..++..=.-+.+++...-....+|.+--
T Consensus 156 ~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy 235 (560)
T PF06160_consen 156 SFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGY 235 (560)
T ss_pred hhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHH
Q ss_pred HHHH---------HHHHHHHHHHHHHHhHHHHHHHH
Q 001598 658 SKIV---------QLKTAMHRLEEKVSDMETENQIL 684 (1047)
Q Consensus 658 ~~l~---------~l~~~~~~Le~~l~~Le~E~~~L 684 (1047)
.++. +..+++..+++++......++.|
T Consensus 236 ~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l 271 (560)
T PF06160_consen 236 REMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNL 271 (560)
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC
No 430
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=55.91 E-value=89 Score=26.45 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 001598 662 QLKTAMHRLEEKVS 675 (1047)
Q Consensus 662 ~l~~~~~~Le~~l~ 675 (1047)
+++.++..+++.+.
T Consensus 50 ~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 50 ELEEELEKLEEALE 63 (66)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444443333
No 431
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=55.85 E-value=3.4e+02 Score=30.44 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=5.3
Q ss_pred HHHHhHHHHHHHH
Q 001598 672 EKVSDMETENQIL 684 (1047)
Q Consensus 672 ~~l~~Le~E~~~L 684 (1047)
.+...++.|+..|
T Consensus 284 ~~~~~l~~ei~~L 296 (297)
T PF02841_consen 284 EEAEKLQKEIQDL 296 (297)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 3344444444433
No 432
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.78 E-value=83 Score=27.09 Aligned_cols=34 Identities=9% Similarity=0.219 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001598 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1047)
Q Consensus 655 ~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~ 688 (1047)
++...+.+.+..+..++.+++.|-+....++.++
T Consensus 26 eLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~~ 59 (72)
T COG2900 26 ELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPSA 59 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3333344444555555555555555555555444
No 433
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.69 E-value=76 Score=35.58 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=11.5
Q ss_pred HHHHHHHHHhccCCCeeeeec
Q 001598 250 QQLQQLLETLSSSEPHYIRCV 270 (1047)
Q Consensus 250 ~~l~~L~~~l~~t~~hfIrCi 270 (1047)
.-+..||..+....|-|-+-+
T Consensus 126 ~Liq~l~a~f~~~pP~ys~~~ 146 (365)
T KOG2391|consen 126 GLIQELIAAFSEDPPVYSRSL 146 (365)
T ss_pred HHHHHHHHHhcCCCccccCCC
Confidence 334555556666666665443
No 434
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.66 E-value=1e+02 Score=26.53 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001598 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1047)
Q Consensus 655 ~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~ 688 (1047)
--+..+++|...+.+.+-.+.+++..+..|-.+.
T Consensus 19 fQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl 52 (72)
T COG2900 19 FQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444455554444444433
No 435
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=55.30 E-value=1.2e+02 Score=33.48 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhHHHHH
Q 001598 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI----------VQLKTAMHRLEEKVSDMETEN 681 (1047)
Q Consensus 612 ~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l----------~~l~~~~~~Le~~l~~Le~E~ 681 (1047)
+.++.++.+|..+++-.++++.=+++.....-.+.+++..-+.++++.+ -+.+.++.+|.++-+-|+.|+
T Consensus 3 dd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeREL 82 (351)
T PF07058_consen 3 DDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLEREL 82 (351)
T ss_pred hhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777666666666666666666666544 244555555555555555555
Q ss_pred HHH
Q 001598 682 QIL 684 (1047)
Q Consensus 682 ~~L 684 (1047)
...
T Consensus 83 ARa 85 (351)
T PF07058_consen 83 ARA 85 (351)
T ss_pred HHh
Confidence 443
No 436
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=54.91 E-value=87 Score=32.63 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHh
Q 001598 666 AMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 666 ~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
++++++.++++.+.|.+.|++|
T Consensus 162 ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 162 EIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 437
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=54.82 E-value=43 Score=30.20 Aligned_cols=48 Identities=21% Similarity=0.253 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccc
Q 001598 643 SKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLL 690 (1047)
Q Consensus 643 ~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~~~ 690 (1047)
++++..+..++-+++..+++|...+...+++.-+|+.|++.|-|-..+
T Consensus 55 ~EEKaRlItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeN 102 (120)
T KOG3650|consen 55 EEEKARLITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIEN 102 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence 345666777777888888888888899999999999999999885543
No 438
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=54.80 E-value=98 Score=31.22 Aligned_cols=62 Identities=13% Similarity=0.138 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 626 SSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 626 ~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
+.+-.....++..+....+.+..+.+++...+..+....+.+.+|+..++.++.+++.+...
T Consensus 23 e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444444444445555555555555555556666666666666666555543
No 439
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=54.60 E-value=77 Score=37.90 Aligned_cols=69 Identities=19% Similarity=0.337 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001598 616 SENEKLKTLVSSLEKKIDETEKKFEETSKI------SEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1047)
Q Consensus 616 ~e~~~L~~~l~~l~~~l~ele~~~~el~~~------~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L 684 (1047)
.+...|+.++.+++.+++++++.+..+++. ..+....+..+......+.+++.++++++..|+++++..
T Consensus 334 ~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 334 EKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444444444333331 122333444555555566666666666666666666555
No 440
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=54.56 E-value=39 Score=41.33 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=21.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 001598 470 QTRASILIQSHCRKYLARLHYMKLKKAAIT 499 (1047)
Q Consensus 470 ~~~aa~~IQ~~~R~~~~r~~~~~~~~a~v~ 499 (1047)
=..-|.+||+.||.+.+|+.|.+++..+..
T Consensus 695 ~d~~A~~IQkAWRrfv~rrky~k~ree~t~ 724 (1106)
T KOG0162|consen 695 WDGMARRIQKAWRRFVARRKYEKMREEATK 724 (1106)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888777765543
No 441
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=54.24 E-value=4.2 Score=48.27 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 519 AARETGALQAAKNKLEKQVEELTWRLQ 545 (1047)
Q Consensus 519 ~a~~~~~l~~~~~~LE~kv~el~~~l~ 545 (1047)
-+.|+..|++.+.....+++|.+.+|.
T Consensus 374 YEqEI~~LkErL~~S~rkLeEyErrLl 400 (495)
T PF12004_consen 374 YEQEIQSLKERLRMSHRKLEEYERRLL 400 (495)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666666666666666655
No 442
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=53.76 E-value=1.2e+02 Score=35.50 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEK 673 (1047)
Q Consensus 617 e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~ 673 (1047)
|..+.+..+...+.+...++-++...++..+...++-..++..++.++..++.+.+.
T Consensus 50 e~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~ 106 (604)
T KOG3564|consen 50 ELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDM 106 (604)
T ss_pred HHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333333333334444444443343444444433334444444444444444444433
No 443
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=53.37 E-value=1.3e+02 Score=31.15 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=10.3
Q ss_pred CccHHHHHHHHHhhc
Q 001598 330 SSDEVTACKRLLEKV 344 (1047)
Q Consensus 330 ~~~~~~~~~~il~~~ 344 (1047)
..|.....+.||+.+
T Consensus 59 ~~d~~~q~eeILn~I 73 (259)
T KOG4001|consen 59 HIDSEHQLEEILNCI 73 (259)
T ss_pred ccChHHHHHHHHHcc
Confidence 346667777888765
No 444
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=53.22 E-value=3e+02 Score=29.11 Aligned_cols=179 Identities=20% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 506 GKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMK 585 (1047)
Q Consensus 506 ~~~ark~l~~l~~~a~~~~~l~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~ 585 (1047)
+++.++....-.....-...+.......+.+..++..+-.....--.+.-..+..+...++.++.+|+ .+...+.....
T Consensus 7 ~yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~-~~~~~k~~qe~ 85 (206)
T PF14988_consen 7 EYLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALK-EFRRLKEQQER 85 (206)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHH
Q ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Q 001598 586 EIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLV---SSLEKKIDETEK-----------KFEETSKISEERLK 651 (1047)
Q Consensus 586 e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l---~~l~~~l~ele~-----------~~~el~~~~~e~~~ 651 (1047)
++...+.+..... .+........-..+-.++..|+.++ .-..-.-....+ ...-+.........
T Consensus 86 eI~~Le~e~~~~~--~e~~~~l~~~~~qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~ 163 (206)
T PF14988_consen 86 EIQTLEEELEKMR--AEHAEKLQEAESQFLQEKARLEKEASELKILQLGERAHKELKKKAQALELAAKKSLDEFTRSIKR 163 (206)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 652 ~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
+...+...+..+-.+...|+.....|++....|+++
T Consensus 164 EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~e 199 (206)
T PF14988_consen 164 ENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQE 199 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 445
>PRK00846 hypothetical protein; Provisional
Probab=53.10 E-value=1.3e+02 Score=26.41 Aligned_cols=20 Identities=10% Similarity=-0.001 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 001598 665 TAMHRLEEKVSDMETENQIL 684 (1047)
Q Consensus 665 ~~~~~Le~~l~~Le~E~~~L 684 (1047)
..+..|+.+++.|.+.++..
T Consensus 41 ~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 41 LTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444433
No 446
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=52.49 E-value=90 Score=36.90 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
-+++..+..+..++..++++++.+.....+++..+.+..++ +.+++.++...+.+++..++.++..+++++..+-..
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~---~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKD---KIEEIKKELKELKEELTELSAALKALEAELQDKLLS 105 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566667777777777777777666666666553322110 023344445555666666666666666666554443
Q ss_pred c
Q 001598 688 S 688 (1047)
Q Consensus 688 ~ 688 (1047)
.
T Consensus 106 l 106 (418)
T TIGR00414 106 I 106 (418)
T ss_pred C
Confidence 3
No 447
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=52.48 E-value=1.9e+02 Score=26.54 Aligned_cols=9 Identities=0% Similarity=0.154 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 001598 639 FEETSKISE 647 (1047)
Q Consensus 639 ~~el~~~~~ 647 (1047)
+-.+.+..+
T Consensus 47 yfa~mr~~d 55 (96)
T PF08647_consen 47 YFAAMRSKD 55 (96)
T ss_pred HHHHHHhHH
Confidence 333333333
No 448
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=52.18 E-value=1.4e+02 Score=33.86 Aligned_cols=24 Identities=29% Similarity=0.395 Sum_probs=14.4
Q ss_pred HHHHHHHhhhHHHHHhhhhcCCCC
Q 001598 975 IFTQTFSYINVQLFNSLLLRRECC 998 (1047)
Q Consensus 975 ~f~qlf~fin~~lfN~Ll~r~~~c 998 (1047)
++.|.|-+-|+..+-.+-...+|+
T Consensus 270 f~~~~~q~yn~~~l~~~~~~~~~~ 293 (330)
T PF07851_consen 270 FFGQFFQLYNAYTLFELSYHPECR 293 (330)
T ss_pred HHHHHHHHHHHHHHHHHHcCccch
Confidence 456677777777766664444433
No 449
>PRK10698 phage shock protein PspA; Provisional
Probab=52.14 E-value=3.3e+02 Score=29.20 Aligned_cols=11 Identities=9% Similarity=0.253 Sum_probs=5.5
Q ss_pred HHHHHHHHHHh
Q 001598 677 METENQILRQQ 687 (1047)
Q Consensus 677 Le~E~~~L~qq 687 (1047)
.++|+..|+.+
T Consensus 206 ve~ELa~LK~~ 216 (222)
T PRK10698 206 ISEQLAALKAK 216 (222)
T ss_pred HHHHHHHHHHH
Confidence 44555555543
No 450
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=52.12 E-value=23 Score=28.92 Aligned_cols=31 Identities=35% Similarity=0.574 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001598 658 SKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1047)
Q Consensus 658 ~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~ 688 (1047)
+.++.|.+.+.+|++++..|+.||..|++.+
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456788888999999999999999999854
No 451
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=52.05 E-value=1.1e+02 Score=30.66 Aligned_cols=11 Identities=55% Similarity=0.619 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 001598 618 NEKLKTLVSSL 628 (1047)
Q Consensus 618 ~~~L~~~l~~l 628 (1047)
+..|+.++..+
T Consensus 106 ~~~l~~e~~~l 116 (161)
T TIGR02894 106 NERLKNQNESL 116 (161)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 452
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=51.99 E-value=1.7e+02 Score=25.90 Aligned_cols=61 Identities=13% Similarity=0.273 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHH
Q 001598 622 KTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMH----RLEEKVSDMETENQ 682 (1047)
Q Consensus 622 ~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~----~Le~~l~~Le~E~~ 682 (1047)
+.+++.+...+...+....+.+........++...+.++-+|+..-. .-+++|.+|+.+++
T Consensus 10 r~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 10 RQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444444455555544444333 33455555555543
No 453
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=51.78 E-value=2.2e+02 Score=32.57 Aligned_cols=17 Identities=12% Similarity=0.333 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhHHHHHH
Q 001598 666 AMHRLEEKVSDMETENQ 682 (1047)
Q Consensus 666 ~~~~Le~~l~~Le~E~~ 682 (1047)
.+.+|+..+..++....
T Consensus 195 KIR~lq~~L~~~~~~~~ 211 (342)
T PF06632_consen 195 KIRELQRLLASAKEEEK 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccc
Confidence 33344444444444333
No 454
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=51.72 E-value=3.4e+02 Score=31.74 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001598 621 LKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1047)
Q Consensus 621 L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~ 683 (1047)
|..+..+.-..+..++....++......+..-|..++.+ +.+++..++..++.|++.+..
T Consensus 327 lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~---~~~N~~~i~~n~~~le~Ri~~ 386 (388)
T PF04912_consen 327 LHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK---FKENMETIEKNVKKLEERIAK 386 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence 333444444455555555555555555555555555544 334444444455555544443
No 455
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=51.46 E-value=1e+02 Score=29.24 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 649 ~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
+..++..+++.++.++.++..++.++..++..+..+.+
T Consensus 82 l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 119 (120)
T PF02996_consen 82 LKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQ 119 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444455555555666666666666666666655544
No 456
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=51.35 E-value=5.1e+02 Score=31.21 Aligned_cols=8 Identities=38% Similarity=0.219 Sum_probs=3.3
Q ss_pred hhhhhhcc
Q 001598 286 VLQQLRCG 293 (1047)
Q Consensus 286 v~~QLr~~ 293 (1047)
...|+|.-
T Consensus 25 t~~~i~~i 32 (489)
T PF05262_consen 25 TAQQIRGI 32 (489)
T ss_pred HHHHHHHH
Confidence 34444433
No 457
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=51.21 E-value=1.6e+02 Score=25.40 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001598 655 EAESKIVQLKTAMHRLEEKVS 675 (1047)
Q Consensus 655 ~~e~~l~~l~~~~~~Le~~l~ 675 (1047)
.+..+++.|...+..|.+++.
T Consensus 46 ~L~~qv~~Ls~qv~~Ls~ql~ 66 (70)
T PF04899_consen 46 ALSEQVNNLSQQVQRLSEQLE 66 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 458
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=50.84 E-value=3.5e+02 Score=29.20 Aligned_cols=28 Identities=21% Similarity=0.162 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 607 DHAVVEELTSENEKLKTLVSSLEKKIDE 634 (1047)
Q Consensus 607 ~~~~~~~L~~e~~~L~~~l~~l~~~l~e 634 (1047)
..++...|..+...++.++..++..+..
T Consensus 148 ~~a~~~~l~ae~~~l~~~~~~le~el~s 175 (240)
T PF12795_consen 148 SEAQRWLLQAELAALEAQIEMLEQELLS 175 (240)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3555566666666666666555554443
No 459
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=49.87 E-value=1.5e+02 Score=36.26 Aligned_cols=77 Identities=16% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKF------------------EETSKISEERLKQALEAESKIVQLKTAMHR 669 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~------------------~el~~~~~e~~~~l~~~e~~l~~l~~~~~~ 669 (1047)
++++..++.+++.++.+++.++..+.-++.-. .++.+...-..+++.++...+.+++..+.+
T Consensus 77 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (525)
T TIGR02231 77 RKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRE 156 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHH
Q 001598 670 LEEKVSDMETENQIL 684 (1047)
Q Consensus 670 Le~~l~~Le~E~~~L 684 (1047)
+++++..++.++..+
T Consensus 157 ~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 157 LEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHhh
No 460
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=49.30 E-value=3.4e+02 Score=28.55 Aligned_cols=150 Identities=19% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001598 515 KLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEA 594 (1047)
Q Consensus 515 ~l~~~a~~~~~l~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ 594 (1047)
+|++.-.++..--...-.|...+.+....+. ........+...+..-..+++..+.++...........
T Consensus 18 QLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~-----------~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLr 86 (202)
T PF06818_consen 18 QLKESQAEVNQKDSEIVSLRAQLRELRAELR-----------NKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLR 86 (202)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhh
Q ss_pred hccccccccchhhHHHHHH------------------------------HHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q 001598 595 EKVPVVQEVPVIDHAVVEE------------------------------LTSENEKLKTLVSSLEKKIDE----TEKKFE 640 (1047)
Q Consensus 595 ee~~~~~e~~~~~~~~~~~------------------------------L~~e~~~L~~~l~~l~~~l~e----le~~~~ 640 (1047)
+++..++............ |..++..|..+|...+...++ .+.+..
T Consensus 87 ekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~ 166 (202)
T PF06818_consen 87 EKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERR 166 (202)
T ss_pred hhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 641 ETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1047)
Q Consensus 641 el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~ 675 (1047)
....+++++..--+.++....++=.....|+..+.
T Consensus 167 ~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l~ 201 (202)
T PF06818_consen 167 TWQEEKEKVIRYQKQLQQNYVQMYQRNQALERELR 201 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 461
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=49.23 E-value=1.1e+02 Score=28.72 Aligned_cols=54 Identities=15% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKT 665 (1047)
Q Consensus 612 ~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~ 665 (1047)
.++-..+..+++++..+-.++.++++.+.++-+++..+.-+...+.+.+.+...
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 462
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=49.20 E-value=4.3e+02 Score=29.76 Aligned_cols=144 Identities=10% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001598 515 KLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEA 594 (1047)
Q Consensus 515 ~l~~~a~~~~~l~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ 594 (1047)
.+..+...+...+.....++......+.... ........++.++..++.++...+..+ ...+...
T Consensus 56 ~~~~a~a~l~~a~a~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~a~~~~ 120 (327)
T TIGR02971 56 ELDVARTQLDEAKARLAQVRAGAKKGEIAAQ-----------RAARAAAKLFKDVAAQQATLNRLEAEL----ETAQREV 120 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHH-----------HHHHHhhhhhhhHHHHHHHHHHHHHHH----HHHHHHH
Q ss_pred hccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 001598 595 EKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLK-----QALEAESKIVQLKTAMHR 669 (1047)
Q Consensus 595 ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~-----~l~~~e~~l~~l~~~~~~ 669 (1047)
+....+.+.-.....+++....+...++..++.++..+. ..+.+.+........ ++..++.++..++..+..
T Consensus 121 ~R~~~L~~~g~iS~~~~d~~~~~~~~a~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 197 (327)
T TIGR02971 121 DRYRSLFRDGAVSASDLDSKALKLRTAEEELEEALASRS---EQIDGARAALASLAEEVRETDVDLAQAEVKSALEAVQQ 197 (327)
T ss_pred HHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHh
Q 001598 670 LEEKVSD 676 (1047)
Q Consensus 670 Le~~l~~ 676 (1047)
.+..+..
T Consensus 198 a~~~l~~ 204 (327)
T TIGR02971 198 AEALLEL 204 (327)
T ss_pred HHHHHhc
No 463
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=49.12 E-value=6.8e+02 Score=31.98 Aligned_cols=174 Identities=9% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Q 001598 517 KMAARETGALQAA--KNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKL-----MKEIEV 589 (1047)
Q Consensus 517 ~~~a~~~~~l~~~--~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l-----~~e~~~ 589 (1047)
..++.-++.+-+. .+.++.+..+.+..++ =..++...+++++++.|.++++.+.+. ..+...
T Consensus 240 ~~Aa~ilN~la~~Yi~~~l~~k~~~a~~a~~-----------fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~ 308 (726)
T PRK09841 240 QLITRILNSIANNYLQQNIARQAAQDSQSLE-----------FLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKA 308 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Q ss_pred HHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 001598 590 AKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE---AESKIVQLKTA 666 (1047)
Q Consensus 590 ~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~---~e~~l~~l~~~ 666 (1047)
.-....++ +.++..++.+...+...+.+--=.+..++.+++.++++..++..++.. .+..+.+++.+
T Consensus 309 ~l~~~~~l----------~~ql~~l~~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~ 378 (726)
T PRK09841 309 VLEQIVNV----------DNQLNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRD 378 (726)
T ss_pred HHHHHHHH----------HHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHHHHHHhccccCCccccccccCCCccccCCC
Q 001598 667 MHRLEEKVSDMETENQILRQQSLLSTPIKKMSEHISAPATQSLEN 711 (1047)
Q Consensus 667 ~~~Le~~l~~Le~E~~~L~qq~~~~s~~~~~~~~~~~~~~~~~~~ 711 (1047)
.+-.++--..|-...++++.+.....+..++-.....|.....++
T Consensus 379 ~~~~~~lY~~lL~r~~e~~i~~a~~~~~~rIid~A~~p~~P~~P~ 423 (726)
T PRK09841 379 VEAGRAVYLQLLNRQQELSISKSSAIGNVRIIDPAVTQPQPVKPK 423 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCceeeccCCCCCCCCCCch
No 464
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=49.10 E-value=1e+02 Score=26.13 Aligned_cols=52 Identities=23% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhHHHHHHHHH
Q 001598 634 ETEKKFEETSKISEERLKQALEAESKIV--------------QLKTAMHRLEEKVSDMETENQILR 685 (1047)
Q Consensus 634 ele~~~~el~~~~~e~~~~l~~~e~~l~--------------~l~~~~~~Le~~l~~Le~E~~~L~ 685 (1047)
+.++++..++++..++..++...+.++. .-.+.+..++.++..+++.+..|+
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 465
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=48.75 E-value=3.4e+02 Score=28.33 Aligned_cols=132 Identities=11% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001598 548 KRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSS 627 (1047)
Q Consensus 548 ~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~ 627 (1047)
.....++.+.-.+--+.-+.-+...+.-++.++.++..-......+...+...+.....-.........++..|+..+..
T Consensus 41 ~~vk~~lA~kA~qaA~aAeAaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~ 120 (188)
T PF05335_consen 41 QQVKNQLADKAAQAAKAAEAALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKA 120 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001598 628 LEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMET 679 (1047)
Q Consensus 628 l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~ 679 (1047)
.+..+...+........++.+...-|+.++..++.|...+...+..+.+.+.
T Consensus 121 a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~ 172 (188)
T PF05335_consen 121 AQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKK 172 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 466
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=48.49 E-value=5e+02 Score=30.30 Aligned_cols=230 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 453 QTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNK 532 (1047)
Q Consensus 453 Q~~~Rg~~ar~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~v~iQ~~~R~~~ark~l~~l~~~a~~~~~l~~~~~~ 532 (1047)
+..-.+...|..-..++......+.....+..............-+.-=..|+..+.+. +.....++..|...+..
T Consensus 7 ~~~~~a~~~r~~s~~lr~es~~l~~et~~~t~~~q~~~~~~L~~Ri~di~~wk~eL~~~----l~~~~~Ei~~L~~~K~~ 82 (384)
T PF03148_consen 7 QLYNNAEAQRNDSERLRQESRRLINETDARTKWDQYDSNKRLRQRIRDIRFWKNELERE----LEELDEEIDLLEEEKRR 82 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 533 LEKQVEELTWRLQ---------------------------LEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMK 585 (1047)
Q Consensus 533 LE~kv~el~~~l~---------------------------~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~ 585 (1047)
+|+.+..+..-+. .|.............-.+...+++..++.-...++..+..
T Consensus 83 le~aL~~~~~pl~i~~ecL~~R~~R~~~dlv~D~ve~eL~kE~~li~~~~~lL~~~l~~~~eQl~~lr~ar~~Le~Dl~d 162 (384)
T PF03148_consen 83 LEKALEALRKPLSIAQECLSLREKRPGIDLVHDEVEKELLKEVELIENIKRLLQRTLEQAEEQLRLLRAARYRLEKDLSD 162 (384)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhCCCCcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhcccccccc--------------------------------------------------------------
Q 001598 586 EIEVAKKEAEKVPVVQEV-------------------------------------------------------------- 603 (1047)
Q Consensus 586 e~~~~~~~~ee~~~~~e~-------------------------------------------------------------- 603 (1047)
+.++..-...-...-...
T Consensus 163 K~~A~~ID~~~~~L~~~S~~i~~~~~~~r~~~~~~tp~~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~ 242 (384)
T PF03148_consen 163 KFEALEIDTQCLSLNNNSTNISYKPGSTRIPKNSSTPESWEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQA 242 (384)
T ss_pred HHHHHHHHHHHHhCCCccCCCcccCCcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HH
Q 001598 604 ---PVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIV-----------------QL 663 (1047)
Q Consensus 604 ---~~~~~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~-----------------~l 663 (1047)
.......+.+....+.+|+.++.....++.++++.+..+++...+...-++-++..+. .|
T Consensus 243 ~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L 322 (384)
T PF03148_consen 243 DAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGL 322 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q 001598 664 KTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 664 ~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
..++..+++.+..|+..+...+.
T Consensus 323 ~~Ev~~l~~~i~~L~~~L~~a~~ 345 (384)
T PF03148_consen 323 IEEVKELRESIEALQEKLDEAEA 345 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 467
>PF14282 FlxA: FlxA-like protein
Probab=48.43 E-value=1.1e+02 Score=28.68 Aligned_cols=58 Identities=16% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 630 KKIDETEKKFEETSKISEERLK----QALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 630 ~~l~ele~~~~el~~~~~e~~~----~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
..++.+++++..|.+++.++.. .-+..+.+...++.++..|+.+|..++.+.....++
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~ 80 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQ 80 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 468
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=48.42 E-value=2.5e+02 Score=29.81 Aligned_cols=94 Identities=18% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 556 EAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDET 635 (1047)
Q Consensus 556 ~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~l~el 635 (1047)
+.+++-...|.-+-+....+++.--+. +...++.+...+++ +.++..|..++..|..+.+.|+...+.+
T Consensus 55 ~rKr~RL~HLS~EEK~~RrKLKNRVAA-QtaRDrKKaRm~em----------e~~i~dL~een~~L~~en~~Lr~~n~~L 123 (292)
T KOG4005|consen 55 KRKRRRLDHLSWEEKVQRRKLKNRVAA-QTARDRKKARMEEM----------EYEIKDLTEENEILQNENDSLRAINESL 123 (292)
T ss_pred HHHHHhhcccCHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 636 EKKFEETSKISEERLKQALEAESKI 660 (1047)
Q Consensus 636 e~~~~el~~~~~e~~~~l~~~e~~l 660 (1047)
-.+..++..+.+.+.++|.++...+
T Consensus 124 ~~~n~el~~~le~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 124 LAKNHELDSELELLRQELAELKQQQ 148 (292)
T ss_pred HhhhHHHHHHHHHHHHHHHhhHHHH
No 469
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=48.37 E-value=2e+02 Score=25.74 Aligned_cols=69 Identities=19% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001598 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMET 679 (1047)
Q Consensus 611 ~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~ 679 (1047)
+..+.+..+++...++.++++++.+.++..++-..-.++.+++....++++.+-+.+.++-+.++.+..
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~~ 89 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELNS 89 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
No 470
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=48.31 E-value=2.1e+02 Score=25.81 Aligned_cols=71 Identities=25% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001598 614 LTSENEKLKTLVSSLEKKIDE---------TEKKFEETSKISEE-RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1047)
Q Consensus 614 L~~e~~~L~~~l~~l~~~l~e---------le~~~~el~~~~~e-~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~ 683 (1047)
|.......+.+++..-+++.+ -+.+...+++.++. .++++.+++.++..+..++..|+.++..-.+|.+.
T Consensus 2 l~~~~~~~~~ev~~~ve~vA~eLh~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~ 81 (87)
T PF12709_consen 2 LKKKLEESQKEVEKAVEKVARELHALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQE 81 (87)
T ss_pred HHhHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 001598 684 L 684 (1047)
Q Consensus 684 L 684 (1047)
|
T Consensus 82 L 82 (87)
T PF12709_consen 82 L 82 (87)
T ss_pred H
No 471
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=47.98 E-value=1e+02 Score=26.49 Aligned_cols=51 Identities=14% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 625 VSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1047)
Q Consensus 625 l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~ 675 (1047)
+.+.++++...+.++.+.++....++......+.++..+.+.+.++++..+
T Consensus 1 ~~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 472
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=47.74 E-value=1.2e+02 Score=30.56 Aligned_cols=68 Identities=18% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHH
Q 001598 619 EKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKT---AMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 619 ~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~---~~~~Le~~l~~Le~E~~~L~q 686 (1047)
+....-...--+.+...+.+..++..++..+..+|.++..++..|+. .+..|+.+|..|+.+++....
T Consensus 2 eqi~~Im~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~ 72 (155)
T PF06810_consen 2 EQIDKIMAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKE 72 (155)
T ss_pred hHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH
No 473
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=47.73 E-value=1.9e+02 Score=25.06 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001598 620 KLKTLVSSLEKKIDE-TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1047)
Q Consensus 620 ~L~~~l~~l~~~l~e-le~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L 684 (1047)
+|+.++-..-+.+.. ..++..+.+..+..+...+.........|.+.+..|-.++..|.+.++.|
T Consensus 3 eLE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 3 ELEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 474
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=47.46 E-value=2.9e+02 Score=30.39 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 611 VEELTSENEKLKTLVSSLEKKIDE-TEKKFEETSKISEERLKQALEAESKI-VQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 611 ~~~L~~e~~~L~~~l~~l~~~l~e-le~~~~el~~~~~e~~~~l~~~e~~l-~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
.+..++...+...++..-++.+.+ ..++..+.+.+..+.+++|....+.+ ...+++...|+++.+.|++|...+++.
T Consensus 321 qet~eaKr~e~~~e~qrkEee~rqmFvqrvkekE~elke~Ekel~~kf~~lkr~h~eEk~kle~~rr~Leee~~~f~~r 399 (406)
T KOG3859|consen 321 QETYEAKRNEFLGELQRKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKRLHQEEKKKLEEKRKQLEEEVNAFQRR 399 (406)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 475
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=47.32 E-value=3.8e+02 Score=28.55 Aligned_cols=123 Identities=13% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHH
Q 001598 533 LEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVE 612 (1047)
Q Consensus 533 LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~ 612 (1047)
|+.-+.+++..+. ............-..++.++.........-.......++.- .++--.
T Consensus 29 l~q~irem~~~l~-----------~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G---------~EdLAr 88 (219)
T TIGR02977 29 IRLIIQEMEDTLV-----------EVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKG---------REDLAR 88 (219)
T ss_pred HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1047)
Q Consensus 613 ~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~ 675 (1047)
+.-.++...+..+..++..+..++....+++..+.+++.++.++..+-..+.......+....
T Consensus 89 ~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~ 151 (219)
T TIGR02977 89 AALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLD 151 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=47.22 E-value=5.8e+02 Score=30.66 Aligned_cols=222 Identities=14% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHH--HHHHHHHHHHHHHHH--------HHHHH
Q 001598 457 RGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRG--KVARRELRKLKMAAR--------ETGAL 526 (1047)
Q Consensus 457 Rg~~ar~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~v~iQ~~~R~--~~ark~l~~l~~~a~--------~~~~l 526 (1047)
+.++.|..-.+-...+....|-...|+-..-+ ...-+...-.+-+.|.. .+.-..+..++...+ +-+++
T Consensus 185 ~r~l~reakl~~~lqk~f~alEk~mka~e~~r-l~~E~~lreElE~rW~~lq~l~Ee~l~al~gq~ev~~~~~~~E~~~l 263 (531)
T PF15450_consen 185 LRFLKREAKLCSFLQKSFLALEKRMKAQESSR-LRTERSLREELESRWQKLQELTEERLRALQGQQEVGLGGIQSEESKL 263 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccccch
Q 001598 527 QAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKV-PVVQEVPV 605 (1047)
Q Consensus 527 ~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~-~~~~e~~~ 605 (1047)
.+.-.++.+.|..|+.-++ .-+..++.-...|.+.-...-..++.+++++.+.+..-++......... ........
T Consensus 264 ~eq~~~ld~AV~~Ltk~v~---~~q~sL~kvl~aE~kaR~~k~~~e~sk~eeL~~~L~~~lea~q~agkla~Qe~~~~ld 340 (531)
T PF15450_consen 264 LEQCRKLDEAVAQLTKFVQ---QNQKSLNKVLNAEQKARDAKEKLEESKAEELATKLQENLEAMQLAGKLAQQETQSELD 340 (531)
T ss_pred HHHHHhHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 606 IDHAVVEELTSENEKLKTLVSSLEKKID--------------------------ETEKKFEETSKISEERLKQALEAESK 659 (1047)
Q Consensus 606 ~~~~~~~~L~~e~~~L~~~l~~l~~~l~--------------------------ele~~~~el~~~~~e~~~~l~~~e~~ 659 (1047)
...++.+.+...+..+...+.+|..++. ...+....+...-.+....+.+.+++
T Consensus 341 ~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eK 420 (531)
T PF15450_consen 341 LLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEK 420 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Q 001598 660 IVQLKTAMHRLEEKVSDMETENQ 682 (1047)
Q Consensus 660 l~~l~~~~~~Le~~l~~Le~E~~ 682 (1047)
++.+-.++..+.+++...+.+.+
T Consensus 421 Vd~LpqqI~~vs~Kc~~~Ksd~d 443 (531)
T PF15450_consen 421 VDSLPQQIEEVSDKCDLHKSDSD 443 (531)
T ss_pred HHhhhHHHHHHHHHHHHHHhhhh
No 477
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=46.89 E-value=1.6e+02 Score=29.74 Aligned_cols=68 Identities=21% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHH
Q 001598 616 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLK---QALEAESKIVQLKTAMH----RLEEKVSDMETENQI 683 (1047)
Q Consensus 616 ~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~---~l~~~e~~l~~l~~~~~----~Le~~l~~Le~E~~~ 683 (1047)
..+...+..++.....+..++.++.+..+.+..+.+ ..++++.++..++.... ..+.++..+......
T Consensus 13 k~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai 87 (155)
T PF06810_consen 13 KDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAI 87 (155)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 478
>PLN02320 seryl-tRNA synthetase
Probab=46.74 E-value=1.1e+02 Score=36.80 Aligned_cols=79 Identities=20% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001598 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1047)
Q Consensus 609 ~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~ 688 (1047)
+++-.+..+..++..++++++.+..+.-+++.. .....+.+++.++...+.+++..|++++..+++++..+-...
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-----~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKG-----KLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q ss_pred cccC
Q 001598 689 LLST 692 (1047)
Q Consensus 689 ~~~s 692 (1047)
.+.+
T Consensus 168 PN~~ 171 (502)
T PLN02320 168 PNMT 171 (502)
T ss_pred CCCC
No 479
>PLN03188 kinesin-12 family protein; Provisional
Probab=46.69 E-value=8.8e+02 Score=32.60 Aligned_cols=145 Identities=14% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 514 RKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKT---------QENAKLQSALQEMQLQFKESKEKLM 584 (1047)
Q Consensus 514 ~~l~~~a~~~~~l~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~---------~e~~~L~~~l~~le~~l~~~~~~l~ 584 (1047)
..|..+-.-..++-+...+|+++-.+|-.+-+.-.+-..++..+.+ +-+..|..++..++.+-+....-+.
T Consensus 1100 ~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~ 1179 (1320)
T PLN03188 1100 EAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLR 1179 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 001598 585 KEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI-VQL 663 (1047)
Q Consensus 585 ~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l-~~l 663 (1047)
.+...++.++... .+.-..-.+|--.+.+.++...-.+++...++.+.+++.++++.+.++. .++
T Consensus 1180 ~enk~l~~qlrdt--------------aeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~ 1245 (1320)
T PLN03188 1180 DENKSLQAQLRDT--------------AEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEI 1245 (1320)
T ss_pred HhhHHHHHHHhhH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 001598 664 KTAMHRLEE 672 (1047)
Q Consensus 664 ~~~~~~Le~ 672 (1047)
...++.|-+
T Consensus 1246 ~t~~q~~ae 1254 (1320)
T PLN03188 1246 STLNQLVAE 1254 (1320)
T ss_pred HHHHHHHhh
No 480
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=46.61 E-value=7.4e+02 Score=31.67 Aligned_cols=145 Identities=12% Similarity=0.091 Sum_probs=0.0
Q ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH
Q 001598 495 KAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKT---------QENAKL 565 (1047)
Q Consensus 495 ~a~v~iQ~~~R~~~ark~l~~l~~~a~~~~~l~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~---------~e~~~L 565 (1047)
.++..+......++...--.+...+.+...-+.+....++.++.+.+..++ .-+ .+...+
T Consensus 241 ~Aa~ilN~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~-----------~fr~~~~~~d~~~ea~~~ 309 (726)
T PRK09841 241 LITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLN-----------VYRQQRDSVDLNLEAKAV 309 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHcCCCCCCHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 001598 566 QSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDE---TEKKFEET 642 (1047)
Q Consensus 566 ~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~l~e---le~~~~el 642 (1047)
-.++.+++.++.+++... ........+. .-.+..+..+...|+++++.++.++.+ .+.++.++
T Consensus 310 l~~~~~l~~ql~~l~~~~----~~l~~~~~~~----------hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L 375 (726)
T PRK09841 310 LEQIVNVDNQLNELTFRE----AEISQLYKKD----------HPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRL 375 (726)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHhccc----------CchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001598 643 SKISEERLKQALEAESKIVQLK 664 (1047)
Q Consensus 643 ~~~~~e~~~~l~~~e~~l~~l~ 664 (1047)
+++.+-...-...+-.+..+++
T Consensus 376 ~R~~~~~~~lY~~lL~r~~e~~ 397 (726)
T PRK09841 376 SRDVEAGRAVYLQLLNRQQELS 397 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 481
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=46.57 E-value=4.3e+02 Score=28.89 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccch-------------------------------hhHHHH
Q 001598 563 AKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPV-------------------------------IDHAVV 611 (1047)
Q Consensus 563 ~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~-------------------------------~~~~~~ 611 (1047)
+.|++++..++.++++.++...+-.+.+............... ....-+
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKT 665 (1047)
Q Consensus 612 ~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~ 665 (1047)
.-...+.+..++.+.+||+++.....++..++.+.+.+.++...+=+++.=++.
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 482
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=46.29 E-value=1.5e+02 Score=27.33 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHH
Q 001598 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE-------------------AESKIVQLKTAMHRLE 671 (1047)
Q Consensus 611 ~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~-------------------~e~~l~~l~~~~~~Le 671 (1047)
..+|..++.-.+++-+-++.++.+++.+...+..++.+...+.-+ ++..+.-.+.++..|.
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls 82 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELS 82 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHhHHHHHHHH
Q 001598 672 EKVSDMETENQIL 684 (1047)
Q Consensus 672 ~~l~~Le~E~~~L 684 (1047)
.++..|+-||..+
T Consensus 83 ~kv~eLq~ENRvl 95 (96)
T PF11365_consen 83 GKVMELQYENRVL 95 (96)
T ss_pred hHHHHHhhccccc
No 483
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=46.20 E-value=3.5e+02 Score=28.12 Aligned_cols=75 Identities=9% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001598 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1047)
Q Consensus 608 ~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~ 682 (1047)
+.+...++..+..-+.....|+..++-...+..+.-..-....++...++..-...+..+..|+.+|..|+.+.+
T Consensus 111 eAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 111 EAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 484
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=45.90 E-value=2.6e+02 Score=26.20 Aligned_cols=102 Identities=24% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 001598 524 GALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEV 603 (1047)
Q Consensus 524 ~~l~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~ 603 (1047)
..|......+..+..+.+..+..-......++................+-..+++-+..+-.+++...
T Consensus 3 ~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~------------ 70 (127)
T smart00502 3 EALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQK------------ 70 (127)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 604 PVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEE 641 (1047)
Q Consensus 604 ~~~~~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~e 641 (1047)
......+...+..++..+..+...+...+..+..
T Consensus 71 ----~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~ 104 (127)
T smart00502 71 ----ENKLKVLEQQLESLTQKQEKLSHAINFTEEALNS 104 (127)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 485
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=45.78 E-value=6.1e+02 Score=30.46 Aligned_cols=174 Identities=14% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 481 CRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQ 560 (1047)
Q Consensus 481 ~R~~~~r~~~~~~~~a~v~iQ~~~R~~~ark~l~~l~~~a~~~~~l~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~ 560 (1047)
|..-..+..-.....-...-+-.-+...++..+..+.....+...+......+.....++..++. ....
T Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------~l~~ 88 (475)
T PRK10361 20 WLFASYQHAQQKAEQLAEREEMVAELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLR-----------EVTT 88 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 561 ENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFE 640 (1047)
Q Consensus 561 e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~ 640 (1047)
..+..+...++....+++.++++..+.+.....+-+ +....-.+.-...|+..+.=+++.++..+++..
T Consensus 89 ~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile-----------~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~ 157 (475)
T PRK10361 89 RMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFE-----------HSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQ 157 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 641 ETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 641 el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
+... +-.+....|.+++..|.+...++..|-..|-+
T Consensus 158 ~~~~----------~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ 193 (475)
T PRK10361 158 DSFG----------KEAQERHTLAHEIRNLQQLNAQMAQEAINLTR 193 (475)
T ss_pred HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=45.74 E-value=92 Score=25.47 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 625 VSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQL 663 (1047)
Q Consensus 625 l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l 663 (1047)
+++++.++..++-.+..++++.+++.+.++.+++.+.++
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=45.47 E-value=2.3e+02 Score=25.48 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEER-LKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 610 ~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~-~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
.+..+...+..+...=..+...++.+..++.++....... .-.+..-..++......+..+.+.+.++++....|++
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~q 92 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADKLQQ 92 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 488
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=45.26 E-value=5.1e+02 Score=29.39 Aligned_cols=172 Identities=18% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 497 AITTQCAWRGKVARRELRKLKMAAR-ETGALQAAKNKLE--------------KQVEELTWRLQLEKRMRVDMEEAKTQE 561 (1047)
Q Consensus 497 ~v~iQ~~~R~~~ark~l~~l~~~a~-~~~~l~~~~~~LE--------------~kv~el~~~l~~e~~~~~~le~~~~~e 561 (1047)
.+.-+-.-.....|.+|+.+.+.-+ ....++....++. +.-..|..-+..-+..+. ....|
T Consensus 12 ~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk----~L~~E 87 (319)
T PF09789_consen 12 LILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNK----KLKEE 87 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHH----HHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 001598 562 NAKLQSALQEMQLQFKESKEKLMK---------------EIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVS 626 (1047)
Q Consensus 562 ~~~L~~~l~~le~~l~~~~~~l~~---------------e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~ 626 (1047)
.+.|+..+.+++..+.-+...+.. +.+..-..+|++ ..++..|+.....+-.+.+
T Consensus 88 v~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~----------~~q~~qLe~d~qs~lDEke 157 (319)
T PF09789_consen 88 VEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKL----------REQIEQLERDLQSLLDEKE 157 (319)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001598 627 SLEKKIDETEKKFEETSKISEE--------------RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1047)
Q Consensus 627 ~l~~~l~ele~~~~el~~~~~e--------------~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~ 682 (1047)
++..+-+..+.+...+-.++.- +..+..-+.+.+..++++..-+...+.+-+.-++
T Consensus 158 El~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 158 ELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=44.79 E-value=1.2e+02 Score=24.43 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001598 639 FEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1047)
Q Consensus 639 ~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E 680 (1047)
.....+..........+++..+..|+.++..|+.++..|+.|
T Consensus 13 r~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 13 REAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 490
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=44.76 E-value=6e+02 Score=30.14 Aligned_cols=136 Identities=11% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchh
Q 001598 527 QAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVI 606 (1047)
Q Consensus 527 ~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~ 606 (1047)
+.....-|.-|.+|..+.. ++.+.-.+.+++..+..+.....+...-..+...++
T Consensus 222 ~aLL~~sE~~VN~Ls~rar--------------------~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlD----- 276 (434)
T PRK15178 222 QRILSFAEQHVNTVSARMQ--------------------KERILWLENDVKSAQENLGAARLELLKIQHIQKDID----- 276 (434)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC-----
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH---HhH
Q 001598 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMH------RLEEKV---SDM 677 (1047)
Q Consensus 607 ~~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~------~Le~~l---~~L 677 (1047)
.+...+.....+.+|+.++.+++.++..+..-...-.-....+..++..++.++...+..+. .+-..+ ..|
T Consensus 277 P~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L 356 (434)
T PRK15178 277 PKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDL 356 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Q ss_pred HHHHHHHHHh
Q 001598 678 ETENQILRQQ 687 (1047)
Q Consensus 678 e~E~~~L~qq 687 (1047)
+-|.+..++.
T Consensus 357 ~le~efAe~~ 366 (434)
T PRK15178 357 RLQSEIAKAR 366 (434)
T ss_pred HHHHHHHHHH
No 491
>PHA02414 hypothetical protein
Probab=44.32 E-value=1.7e+02 Score=26.58 Aligned_cols=70 Identities=30% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001598 613 ELTSENEKLKTLVSSLEKKID-----------ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1047)
Q Consensus 613 ~L~~e~~~L~~~l~~l~~~l~-----------ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~ 681 (1047)
+...++..|-.+++.++.++. +++.+.++++.-.-.+-+.+.--.++-..+-=++.+|++.++.|.+-+
T Consensus 1 ~~D~~in~Lv~~v~~ledKiQ~Gelt~kgdn~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~aL~~~n 80 (111)
T PHA02414 1 EMDKEINNLVSQVETLEDKIQEGELTDKGDNKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKISALAESN 80 (111)
T ss_pred CcchHHHHHHHHHHHHHHHHhcCccccCCchHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHHHHHhcc
Q ss_pred H
Q 001598 682 Q 682 (1047)
Q Consensus 682 ~ 682 (1047)
+
T Consensus 81 ~ 81 (111)
T PHA02414 81 K 81 (111)
T ss_pred c
No 492
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=44.24 E-value=2.4e+02 Score=25.31 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001598 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1047)
Q Consensus 614 L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq 687 (1047)
+-.-+.++...+++..+.++.++++...+.++..++..+..++.+++....+.+..+=+.+..+-+-...+.+.
T Consensus 17 l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~~s 90 (90)
T PF06103_consen 17 LIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELNSS 90 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC
No 493
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=43.96 E-value=6.8e+02 Score=30.48 Aligned_cols=174 Identities=16% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 001598 509 ARRELRKLKMAARETGALQAAKNKLEKQVE----------------ELTWRLQ----LEKRMRVDMEEAKTQENAKLQSA 568 (1047)
Q Consensus 509 ark~l~~l~~~a~~~~~l~~~~~~LE~kv~----------------el~~~l~----~e~~~~~~le~~~~~e~~~L~~~ 568 (1047)
++...++++........++.....++..+. +-..... ++......+......+...+.++
T Consensus 343 ~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~~~~~~E~~~~de~~~~~~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~e~ 422 (607)
T KOG0240|consen 343 AEEWKRKLEKKKDKNVALKEELEKLRNSLKRWRNGEEVKEDEDFSLKEEAKMSAILSEEEMSITKLKGSLEEEEDILTER 422 (607)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccCcccchhhhhHHHHHHhhhhhhhhhhhhhhcccchHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 569 LQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEE 648 (1047)
Q Consensus 569 l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e 648 (1047)
+..+..++.+...++.+...-..+...++....+.........+.+..+..+++...+..+.+..+.-..+.++......
T Consensus 423 ~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~~~~~ 502 (607)
T KOG0240|consen 423 IESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEELAVNYDQ 502 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001598 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1047)
Q Consensus 649 ~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L 684 (1047)
..++.+..-... +..++.++++-......-+..+
T Consensus 503 ~~~~~~~~~~~n--~~sel~sl~~~~~~~~~r~~~~ 536 (607)
T KOG0240|consen 503 KSEEKESKLSQN--LKSELQSLQEPSEHQSKRITEL 536 (607)
T ss_pred HHHHHhhhhhhh--hHHHHHhhhhcccchhHHHHHH
No 494
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.73 E-value=6.6e+02 Score=30.28 Aligned_cols=158 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001598 516 LKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAE 595 (1047)
Q Consensus 516 l~~~a~~~~~l~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~e 595 (1047)
++....-...++.-...+..+..+--+++. ...+|++.+.+....|....+++.+.-+.-....++...
T Consensus 576 i~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~-----------~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~ 644 (741)
T KOG4460|consen 576 ILKQDLVKEEIQRHVKLLCDQKKKQLQDLS-----------YCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLH 644 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q ss_pred cc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 596 KV----PVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLE 671 (1047)
Q Consensus 596 e~----~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le 671 (1047)
.. ..+....-.-..++.-+..+...|...++.++++.+..+...........+..=.+.+.+.+. +++.+.+|-
T Consensus 645 ~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~~~--iqsiL~~L~ 722 (741)
T KOG4460|consen 645 SFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQRKC--IQSILKELG 722 (741)
T ss_pred cccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHH--HHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHH
Q 001598 672 EKVSDMETENQILRQ 686 (1047)
Q Consensus 672 ~~l~~Le~E~~~L~q 686 (1047)
..+.+.-++.+..+.
T Consensus 723 ~~i~~~~k~VK~i~~ 737 (741)
T KOG4460|consen 723 EHIREMVKQVKDIRN 737 (741)
T ss_pred HHHHHHHHHHHHHHH
No 495
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=43.62 E-value=2.3e+02 Score=24.87 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001598 627 SLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1047)
Q Consensus 627 ~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~ 688 (1047)
++-+.+.++..++.+.+.+.+++..-+..++.++....+-...|+.+...++.. ..+..+.
T Consensus 2 ~Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~-~~~~~~~ 62 (76)
T PF11544_consen 2 ELIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS-NDLNKQE 62 (76)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHC
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccchhhh
No 496
>PHA03011 hypothetical protein; Provisional
Probab=43.60 E-value=1.7e+02 Score=26.73 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccC
Q 001598 629 EKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLLST 692 (1047)
Q Consensus 629 ~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~qq~~~~s 692 (1047)
+....+......++..+..++..+-.-.+...+.++--+++-.+++..|+.|++.|+.+..+.+
T Consensus 56 ~GD~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~s 119 (120)
T PHA03011 56 EGDINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANLS 119 (120)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhccC
No 497
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=43.53 E-value=9.7e+02 Score=32.17 Aligned_cols=216 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH----------------
Q 001598 474 SILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARREL-RKLKMAARETGALQAAKNKLEKQ---------------- 536 (1047)
Q Consensus 474 a~~IQ~~~R~~~~r~~~~~~~~a~v~iQ~~~R~~~ark~l-~~l~~~a~~~~~l~~~~~~LE~k---------------- 536 (1047)
...||........++. -..+..+-.+|....-....++. .+.+.-.+.+...-+...++.++
T Consensus 25 ~~~iq~~l~~~~~~~~-~~~k~~~~~l~~tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s 103 (1109)
T PRK10929 25 EKQITQELEQAKAAKT-PAQAEIVEALQSALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMS 103 (1109)
T ss_pred HHHHHHHHHHhhcCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Q 001598 537 VEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTS 616 (1047)
Q Consensus 537 v~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~ 616 (1047)
..+|++++........+.++....++.++.+-...+...-... .+..+...+....+.....-.+. ...++...++.
T Consensus 104 ~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~-~~~~~~l~~i~~~L~~~~~~~~~--l~~a~~~~lqa 180 (1109)
T PRK10929 104 TDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQ-TEARRQLNEIERRLQTLGTPNTP--LAQAQLTALQA 180 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhH-HHHHHHHHHHHHHHhCCCCCCCc--ccHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HhccccCC
Q 001598 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR-QQSLLSTP 693 (1047)
Q Consensus 617 e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l~~l~~~~~~Le~~l~~Le~E~~~L~-qq~~~~s~ 693 (1047)
|...++.+++.++..+.......+-.+.+.+....++...+..+..+++.+.+.+.+-.+..-+-...- ++....+|
T Consensus 181 e~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~ 258 (1109)
T PRK10929 181 ESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPK 258 (1109)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCh
No 498
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=43.48 E-value=1.2e+02 Score=28.57 Aligned_cols=50 Identities=14% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAES 658 (1047)
Q Consensus 609 ~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~ 658 (1047)
+.+..++..+..+-.++.+++..+.++-++...|+-+++.+...+.+.+.
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 499
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=43.16 E-value=6.5e+02 Score=30.06 Aligned_cols=171 Identities=15% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 518 MAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKT------------QENAKLQSALQEMQLQFKESKEKLMK 585 (1047)
Q Consensus 518 ~~a~~~~~l~~~~~~LE~kv~el~~~l~~e~~~~~~le~~~~------------~e~~~L~~~l~~le~~l~~~~~~l~~ 585 (1047)
..+......+....-+..++.+++.++...+.....-..... ++...+..++...+.........+
T Consensus 185 ~~~~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~~~~~~~~~~~~~~~ln~ql~~~~~~~~~~~a~l-- 262 (458)
T COG3206 185 QLEAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARARLAQAEARL-- 262 (458)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred HHHHHHHHhhccccccccchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 001598 586 EIEVAKKEAEKVPVVQEVPVIDHAV-VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA-LEAESKIVQL 663 (1047)
Q Consensus 586 e~~~~~~~~ee~~~~~e~~~~~~~~-~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l-~~~e~~l~~l 663 (1047)
....................... ++.|..+...+...+.++.......--+...++.+..++...+ .++..-+..+
T Consensus 263 --~~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~ 340 (458)
T COG3206 263 --ASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASL 340 (458)
T ss_pred --HHHHHhhcccccchhhhHHhccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhccccC
Q 001598 664 KTAMHRLEEKVSDMETENQILRQQSLLST 692 (1047)
Q Consensus 664 ~~~~~~Le~~l~~Le~E~~~L~qq~~~~s 692 (1047)
..+...++.+...|+++...++.+....+
T Consensus 341 ~~~~~~l~~~~~~L~~~~~~l~~~~~~~~ 369 (458)
T COG3206 341 PNELALLEQQEAALEKELAQLKGRLSKLP 369 (458)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhch
No 500
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=43.01 E-value=4.7e+02 Score=28.38 Aligned_cols=173 Identities=17% Similarity=0.306 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 502 CAWRGKVARRELRKLKMAARETGALQAAKNKLEKQV-EELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESK 580 (1047)
Q Consensus 502 ~~~R~~~ark~l~~l~~~a~~~~~l~~~~~~LE~kv-~el~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~le~~l~~~~ 580 (1047)
..+-..+....-.+...+......+++....|++.+ .+...|.+..+.+....+.....-...++..+......+...-
T Consensus 15 ~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l 94 (247)
T PF06705_consen 15 SGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQEQLQSRL 94 (247)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001598 581 EKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI 660 (1047)
Q Consensus 581 ~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~L~~~l~~l~~~l~ele~~~~el~~~~~e~~~~l~~~e~~l 660 (1047)
..+...+......+.+. ........+.....|...+.++...++.......+.+. ...+.+.+....+
T Consensus 95 ~~L~~ri~~L~~~i~ee---------~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~---~i~krl~e~~~~l 162 (247)
T PF06705_consen 95 DSLNDRIEALEEEIQEE---------KEERPQDIEELNQELVRELNELQEAFENERNEREEREE---NILKRLEEEENRL 162 (247)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q ss_pred -HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001598 661 -VQLKTAMHRLEEKVSDMETENQILRQ 686 (1047)
Q Consensus 661 -~~l~~~~~~Le~~l~~Le~E~~~L~q 686 (1047)
..+..+...=+..+..+..+++.+..
T Consensus 163 ~~~i~~Ek~~Re~~~~~l~~~le~~~~ 189 (247)
T PF06705_consen 163 QEKIEKEKNTRESKLSELRSELEEVKR 189 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!