BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001599
(1047 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex
Length = 861
Score = 635 bits (1637), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/821 (42%), Positives = 499/821 (60%), Gaps = 45/821 (5%)
Query: 202 PLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRES 261
P RP G++G ++AN F ++P D++ Y++ I PE R VNR ++E +V+ ++
Sbjct: 28 PPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQ 87
Query: 262 HLGKRLPAYDGRKSLYTAGPLPFLSK--EFRITLLXXXXXXXXXREREFKVVIKLAARAD 319
G R P +DGRK+LYTA PLP E +TL ++R FKV IK +
Sbjct: 88 IFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTL------PGEGKDRIFKVSIKWVSCVS 141
Query: 320 LHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESW 379
L L L GR P E +Q LD+V+R LP+ RY PVGRSF++ G PLG G E W
Sbjct: 142 LQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVW 201
Query: 380 RGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNR---DVSSRPLSDADRVKIK 436
GF+QS+RP+ + LNID+S+TAF + PVI+FV ++L+ + +PL+D+ RVK
Sbjct: 202 FGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFT 261
Query: 437 KALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVD-ESGTLK--SVVEYFYETYGFV 493
K ++G++VE+TH G M+RKYR+ +T + TFP+ ESG +V +YF + + V
Sbjct: 262 KEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLV 321
Query: 494 IQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDI 553
+++ PCLQVG +Q+ YLP+EVC IV GQR K+L + Q + +++ T + +R+ +I
Sbjct: 322 LRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEI 381
Query: 554 MQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKD-CLPQVGQWNM 612
+ + +++ DPY REFGI + +++ V R+L P + Y G+ K P G W+M
Sbjct: 382 SKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILY--GGRNKAIATPVQGVWDM 439
Query: 613 MNKKMVNGGTVNHWICINFS--RHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISAR 670
NK+ G + W F+ R + + F +L ++ +GM +P +
Sbjct: 440 RNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQG 499
Query: 671 PEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLT 730
+ VE + + H T G L L++VILP +Y ++KR+ +T LG+ +QC
Sbjct: 500 ADSVEPMFR---HLKNTYAG----LQLVVVILPGKT-PVYAEVKRVGDTVLGMATQCVQM 551
Query: 731 KHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGED 790
K+V + + Q ++N+ LKINVK+GG N +L + + P V +P I GADVTHP G+
Sbjct: 552 KNVQRTTPQTLSNLCLKINVKLGGVNNIL---LPQGRPPVFQQPVIFLGADVTHPPAGDG 608
Query: 791 SSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDL-----------FKTWQDPGTPYI 839
PSIAAVV S D +Y V Q HRQE+IQDL +K+ + T I
Sbjct: 609 KKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRII 667
Query: 840 F-PDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNA 898
F DGVSEGQF QVL +EL AIR+AC LE +YQP +TF+VVQKRHHTRLF + ++R
Sbjct: 668 FYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNER-- 725
Query: 899 VDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLT 958
V +SGNI GT VD+KI HPTEFDFYLCSHAGIQGTSRP+HYHVLWD+N+F++D LQ LT
Sbjct: 726 VGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILT 785
Query: 959 NNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 999
LC+TY RCTRSVSI PAYYAHL AFRAR+++ + DS
Sbjct: 786 YQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDS 826
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2
pdb|4EI3|A Chain A, Crystal Structure Of Human Argonaute2
Length = 859
Score = 634 bits (1634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/821 (42%), Positives = 498/821 (60%), Gaps = 45/821 (5%)
Query: 202 PLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRES 261
P RP G++G ++AN F ++P D++ Y++ I PE R VNR ++E +V+ ++
Sbjct: 26 PPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQ 85
Query: 262 HLGKRLPAYDGRKSLYTAGPLPFLSK--EFRITLLXXXXXXXXXREREFKVVIKLAARAD 319
G R P +DGRK+LYTA PLP E +TL ++R FKV IK +
Sbjct: 86 IFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTL------PGEGKDRIFKVSIKWVSCVS 139
Query: 320 LHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESW 379
L L L GR P E +Q LD+V+R LP+ RY PVGRSF++ G PLG G E W
Sbjct: 140 LQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVW 199
Query: 380 RGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNR---DVSSRPLSDADRVKIK 436
GF+QS+RP+ + LNID+S+TAF + PVI+FV ++L+ + +PL+D+ RVK
Sbjct: 200 FGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFT 259
Query: 437 KALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVD-ESGTLK--SVVEYFYETYGFV 493
K ++G++VE+TH G M+RKYR+ +T + TFP+ ESG +V +YF + + V
Sbjct: 260 KEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLV 319
Query: 494 IQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDI 553
+++ PCLQVG +Q+ YLP+EVC IV GQR K+L + Q + +++ T + +R+ +I
Sbjct: 320 LRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEI 379
Query: 554 MQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKD-CLPQVGQWNM 612
+ + ++ DPY REFGI + +++ V R+L P + Y G+ K P G W+M
Sbjct: 380 SKLMRSADFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILY--GGRNKAIATPVQGVWDM 437
Query: 613 MNKKMVNGGTVNHWICINFS--RHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISAR 670
NK+ G + W F+ R + + F +L ++ +GM +P +
Sbjct: 438 RNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQG 497
Query: 671 PEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLT 730
+ VE + + H T G L L++VILP +Y ++KR+ +T LG+ +QC
Sbjct: 498 ADSVEPMFR---HLKNTYAG----LQLVVVILPGKT-PVYAEVKRVGDTVLGMATQCVQM 549
Query: 731 KHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGED 790
K+V + + Q ++N+ LKINVK+GG N +L + + P V +P I GADVTHP G+
Sbjct: 550 KNVQRTTPQTLSNLCLKINVKLGGVNNIL---LPQGRPPVFQQPVIFLGADVTHPPAGDG 606
Query: 791 SSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDL-----------FKTWQDPGTPYI 839
PSIAAVV S D +Y V Q HRQE+IQDL +K+ + T I
Sbjct: 607 KKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRII 665
Query: 840 F-PDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNA 898
F DGVSEGQF QVL +EL AIR+AC LE +YQP +TF+VVQKRHHTRLF + ++R
Sbjct: 666 FYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNER-- 723
Query: 899 VDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLT 958
V +SGNI GT VD+KI HPTEFDFYLCSHAGIQGTSRP+HYHVLWD+N+F++D LQ LT
Sbjct: 724 VGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILT 783
Query: 959 NNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 999
LC+TY RCTRSVSI PAYYAHL AFRAR+++ + DS
Sbjct: 784 YQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDS 824
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna
Binding By Arabidopsis Ago Mid Domains
Length = 154
Score = 287 bits (735), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 131/148 (88%), Positives = 142/148 (95%)
Query: 613 MNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPE 672
MNKKM+NGGTVN+WICINFSR VQD++AR FC ELAQMCY+SGMAFNPEPV+PP+SARPE
Sbjct: 1 MNKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPE 60
Query: 673 HVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKH 732
VEKVLKTRYHDA +KL QGKE+DLLIVILPDNNGSLYGDLKRICET+LG+VSQCCLTKH
Sbjct: 61 QVEKVLKTRYHDATSKLSQGKEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKH 120
Query: 733 VFKMSKQYMANVALKINVKVGGRNTVLV 760
VFKMSKQYMANVALKINVKVGGRNTVLV
Sbjct: 121 VFKMSKQYMANVALKINVKVGGRNTVLV 148
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
In Complex With Ump
pdb|4G0Q|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
In Complex With Cmp
pdb|4G0Y|A Chain A, Crystal Structure Of Arabidopsis Ago1 In Complex With Amp
pdb|4G0Z|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
In Complex With Gmp
Length = 147
Score = 283 bits (725), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 129/146 (88%), Positives = 140/146 (95%)
Query: 614 NKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEH 673
NKKM+NGGTVN+WICINFSR VQD++AR FC ELAQMCY+SGMAFNPEPV+PP+SARPE
Sbjct: 2 NKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQ 61
Query: 674 VEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHV 733
VEKVLKTRYHDA +KL QGKE+DLLIVILPDNNGSLYGDLKRICET+LG+VSQCCLTKHV
Sbjct: 62 VEKVLKTRYHDATSKLSQGKEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHV 121
Query: 734 FKMSKQYMANVALKINVKVGGRNTVL 759
FKMSKQYMANVALKINVKVGGRNTVL
Sbjct: 122 FKMSKQYMANVALKINVKVGGRNTVL 147
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna
Binding By Arabidopsis Ago Domains
Length = 155
Score = 276 bits (706), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 128/149 (85%), Positives = 139/149 (93%), Gaps = 1/149 (0%)
Query: 613 MNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPE 672
MNKKM+NGGTVN+WICINFSR VQD++AR FC ELAQMCY+SGMAFNPEPV+PP+SARPE
Sbjct: 1 MNKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPE 60
Query: 673 HVEKVLKTRYHDAMTKLGQGKELDLLIVILPD-NNGSLYGDLKRICETDLGLVSQCCLTK 731
VEKVLKTRYHDA +KL QGKE+DLLIVILPD N LYGDLKRICET+LG+VSQCCLTK
Sbjct: 61 QVEKVLKTRYHDATSKLSQGKEIDLLIVILPDKKNSDLYGDLKRICETELGIVSQCCLTK 120
Query: 732 HVFKMSKQYMANVALKINVKVGGRNTVLV 760
HVFKMSKQYMANVALKINVKVGGRNTVLV
Sbjct: 121 HVFKMSKQYMANVALKINVKVGGRNTVLV 149
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
Length = 147
Score = 273 bits (699), Expect = 3e-73, Method: Composition-based stats.
Identities = 124/146 (84%), Positives = 135/146 (92%)
Query: 614 NKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEH 673
NKK +NGGTVN+WICINFSR VQD++AR FC ELAQ CY+SG AFNPEPV+PP+SARPE
Sbjct: 2 NKKXINGGTVNNWICINFSRQVQDNLARTFCQELAQXCYVSGXAFNPEPVLPPVSARPEQ 61
Query: 674 VEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHV 733
VEKVLKTRYHDA +KL QGKE+DLLIVILPDNNGSLYGDLKRICET+LG+VSQCCLTKHV
Sbjct: 62 VEKVLKTRYHDATSKLSQGKEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHV 121
Query: 734 FKMSKQYMANVALKINVKVGGRNTVL 759
FK SKQY ANVALKINVKVGGRNTVL
Sbjct: 122 FKXSKQYXANVALKINVKVGGRNTVL 147
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
Domains
Length = 437
Score = 180 bits (457), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 121/328 (36%), Positives = 177/328 (53%), Gaps = 39/328 (11%)
Query: 697 LLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQ--YMANVALKINVKVGG 754
++V+LP + ++Y +KR + G+ + CC+ + Q Y ANV LK+N+K GG
Sbjct: 81 FVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGG 140
Query: 755 RNTVLVDAISRRIPLVSDRPTIIFGADVTHP---HPGED--SSPSIAAVVASQDWPEVTK 809
N I IPL++ T++ G DVTHP G+ S+PSI +V++ D + +
Sbjct: 141 TN----HNIKTPIPLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQ 195
Query: 810 YAGLVCAQAHRQELIQ----DLFKT----WQD--------PGTPYIFPDGVSEGQFYQVL 853
+ +V H QE + D FKT W+ P IF DGVSEGQF V+
Sbjct: 196 WPAMVWNNPHGQESMTEQFTDKFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVI 255
Query: 854 LYELDAIRKACASLEPNYQ-PPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVD 912
EL +R AC + P + P +T +V KRH TR F + ++ +S + GTVVD
Sbjct: 256 KDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTD--PKHIHFKSKSPKEGTVVD 313
Query: 913 SKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDE-------NKFTADGLQSLTNNLCYTY 965
+ + +DF+L +HA +QGT+R AHY VL DE NK AD L+ LT+++CY +
Sbjct: 314 RGVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFRADYGNK-AADTLEQLTHDMCYLF 372
Query: 966 ARCTRSVSIVPPAYYAHLAAFRARFYME 993
R T++VSI PPAYYA L RAR + +
Sbjct: 373 GRATKAVSICPPAYYADLVCDRARIHQK 400
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With
A Guide Rna
pdb|4F1N|B Chain B, Crystal Structure Of Kluyveromyces Polysporus Argonaute With
A Guide Rna
Length = 1046
Score = 170 bits (431), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 111/324 (34%), Positives = 167/324 (51%), Gaps = 30/324 (9%)
Query: 697 LLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRN 756
+L V+ N+ ++Y LK I + G ++ C + + K S QY +NV +K+N+K+ G N
Sbjct: 684 ILYVLRRGNDSAVYDRLKYITDLKFGALNSCVVWDNFKKNSIQYNSNVVMKMNLKLLGSN 743
Query: 757 TVL-VDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVC 815
L ++ I S+ P ++ G+DVTH +P +D + SIA++V S D + T++ G
Sbjct: 744 HSLSIENNKLLIDKESNLPILVLGSDVTH-YPEKDQN-SIASLVGSYD-DKFTQFPGDYM 800
Query: 816 AQAHRQE--------LIQDLFKTWQD------PGTPYIFPDGVSEGQFYQVLLYELDAIR 861
Q E L+ + K +Q P F DGVS QF QV+ E+ +I+
Sbjct: 801 LQDGPGEEIITNVGSLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEVKSIK 860
Query: 862 KACASLEP------NYQPPVTFVVVQKRHHTRLFANNHHDRN------AVDRSGNILPGT 909
++ P Y PPVT + KR+ R + +N AV GN++PGT
Sbjct: 861 ESVRKFGPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVMPGT 920
Query: 910 VVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCT 969
VVD I FDF++ SH ++GT P HY L+DEN+ T+D LQ + NNLCY + R T
Sbjct: 921 VVDRGITSVAHFDFFIQSHQALKGTGVPCHYWCLYDENQSTSDYLQEICNNLCYIFGRST 980
Query: 970 RSVSIVPPAYYAHLAAFRARFYME 993
SV + P YYA L RA + +
Sbjct: 981 TSVKVPAPVYYADLLCTRATCFFK 1004
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain
pdb|4G0O|B Chain B, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain
Length = 139
Score = 154 bits (388), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 96/146 (65%), Gaps = 8/146 (5%)
Query: 614 NKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEH 673
+KKMVNG V W C++FS + + + FC +L MC GM F P+P IP IS PEH
Sbjct: 2 DKKMVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPPEH 61
Query: 674 VEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHV 733
+E+ L + A L LLIVILPD GS YG +KRICET+LG+VSQCC + V
Sbjct: 62 IEEALLDIHKRA-------PGLQLLIVILPDVTGS-YGKIKRICETELGIVSQCCQPRQV 113
Query: 734 FKMSKQYMANVALKINVKVGGRNTVL 759
K++KQYM NVALKINVK GGRNTVL
Sbjct: 114 NKLNKQYMENVALKINVKTGGRNTVL 139
>pdb|1R4K|A Chain A, Solution Structure Of The Drosophila Argonaute 1 Paz
Domain
Length = 169
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 109/168 (64%), Gaps = 6/168 (3%)
Query: 402 TAFIEPLPVIDFVQQLLN-RDVSS--RPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRI 458
TAF + PVIDF+ ++L+ RD++ +PL+D+ RVK K ++G+++E+TH G MRRKYR+
Sbjct: 2 TAFYKAQPVIDFMCEVLDIRDINEQRKPLTDSQRVKFTKEIKGLKIEITHCGQMRRKYRV 61
Query: 459 SGLTSQTTGELTFPVD-ESG-TLK-SVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPM 515
+T + +FP+ E+G T++ +V +YF + Y +++ PCLQVG + + YLP+
Sbjct: 62 CNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYRMKLRYPHLPCLQVGQEHKHTYLPL 121
Query: 516 EVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYH 563
EVC IV GQR K+L + Q + ++K T + +RER+I V ++
Sbjct: 122 EVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREINNLVKRADFN 169
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
Domains
Length = 388
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 148/326 (45%), Gaps = 88/326 (26%)
Query: 697 LLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQ--YMANVALKINVKVGG 754
++V+LP + ++Y +KR + G+ + CC+ + Q Y ANV LK+N+K GG
Sbjct: 81 FVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGG 140
Query: 755 RNTVLVDAISRRIPLVSDRPTIIFGADVTHP---HPGED--SSPSIAAVVASQDWPEVTK 809
N I IPL++ T++ G DVTHP G+ S+PSI +V++ D + +
Sbjct: 141 TN----HNIKTPIPLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQ 195
Query: 810 YAGLVCAQAHRQELIQ----DLFKT----WQD--------PGTPYIFPDGVSEGQFYQVL 853
+ +V H QE + D FKT W+ P IF DGVSEGQF V+
Sbjct: 196 WPAMVWNNPHGQESMTEQFTDKFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVI 255
Query: 854 LYELDAIRKACASLEPNYQ-PPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVD 912
EL +R AC + P + P +T +V +V SG+
Sbjct: 256 KDELPLVRAACKLVYPAGKLPRITLIV------------------SVKGSGS-------- 289
Query: 913 SKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDE-------NKFTADGLQSLTNNLCYTY 965
AHY VL DE NK AD L+ LT+++CY +
Sbjct: 290 -------------------------AHYTVLVDEIFRADYGNK-AADTLEQLTHDMCYLF 323
Query: 966 ARCTRSVSIVPPAYYAHLAAFRARFY 991
R T++VSI PPAYYA L RAR +
Sbjct: 324 GRATKAVSICPPAYYADLVCDRARIH 349
>pdb|1SI2|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In
Complex With A 9-Mer Sirna-Like Duplex Of
Deoxynucleotide Overhang
Length = 149
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 93/140 (66%), Gaps = 6/140 (4%)
Query: 409 PVIDFVQQLL---NRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQT 465
PVI+F+ ++L N D +PL+D+ RV+ K ++G++VEVTH G M+RKYR+ +T +
Sbjct: 7 PVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRP 66
Query: 466 TGELTFPVD-ESG-TLK-SVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVE 522
TFP+ ESG T++ +V +YF + Y +++ PCLQVG +Q+ YLP+EVC IV
Sbjct: 67 ASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVA 126
Query: 523 GQRYSKRLNERQITALLKVT 542
GQR K+L + Q + ++K T
Sbjct: 127 GQRCIKKLTDNQTSTMIKAT 146
>pdb|1SI3|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In
Complex With A 9-Mer Sirna-Like Duplex
Length = 149
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 90/140 (64%), Gaps = 6/140 (4%)
Query: 409 PVIDFVQQLL---NRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQT 465
PVI+F ++L N D +PL+D+ RV+ K ++G++VEVTH G +RKYR+ +T +
Sbjct: 7 PVIEFXCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQXKRKYRVCNVTRRP 66
Query: 466 TGELTFPVD-ESG-TLK-SVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVE 522
TFP+ ESG T++ +V +YF + Y +++ PCLQVG +Q+ YLP+EVC IV
Sbjct: 67 ASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVA 126
Query: 523 GQRYSKRLNERQITALLKVT 542
GQR K+L + Q + +K T
Sbjct: 127 GQRCIKKLTDNQTSTXIKAT 146
>pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain
pdb|4G0M|B Chain B, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain
Length = 150
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 74/151 (49%), Gaps = 9/151 (5%)
Query: 615 KKMVNGGTVNHWICINFSRHVQ-DSIARGFCFELAQMCYISGMAFNPEPVIPPIS----- 668
K + G V HW ++F+ + + + F L C+ GM P++ S
Sbjct: 3 KGVTRGSIVKHWAVLDFTASERFNKMPNDFVDNLIDRCWRLGMQMEA-PIVYKTSRMETL 61
Query: 669 ARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCC 728
+ +E++L++ +A K G + +L + ++G Y LK I ET LGLV+QC
Sbjct: 62 SNGNAIEELLRSVIDEASRKHGGARPTLVLCAMSRKDDG--YKTLKWIAETKLGLVTQCF 119
Query: 729 LTKHVFKMSKQYMANVALKINVKVGGRNTVL 759
LT K QY AN+ALK+N KVGG N L
Sbjct: 120 LTGPATKGGDQYRANLALKMNAKVGGSNVEL 150
>pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2
pdb|3LUC|B Chain B, Crystal Structure Of Mid Domain From Hago2
pdb|3LUC|C Chain C, Crystal Structure Of Mid Domain From Hago2
pdb|3LUD|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Amp
pdb|3LUD|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Amp
pdb|3LUD|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Amp
pdb|3LUG|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Cmp
pdb|3LUG|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Cmp
pdb|3LUG|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Cmp
pdb|3LUH|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Gmp
pdb|3LUH|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Gmp
pdb|3LUH|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Gmp
pdb|3LUJ|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Ump
pdb|3LUJ|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Ump
pdb|3LUJ|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Ump
pdb|3QX8|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
M7gpppg
pdb|3QX8|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
M7gpppg
pdb|3QX8|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
M7gpppg
pdb|3QX9|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Atp
pdb|3QX9|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Atp
pdb|3QX9|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Atp
Length = 138
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 10/145 (6%)
Query: 614 NKKMVNGGTVNHWICINFS--RHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARP 671
NK+ G + W F+ R + + F +L ++ +GM +P +
Sbjct: 2 NKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGA 61
Query: 672 EHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTK 731
+ VE + + H T G L L++VILP +Y ++KR+ +T LG+ +QC K
Sbjct: 62 DSVEPMFR---HLKNTYAG----LQLVVVILPGKT-PVYAEVKRVGDTVLGMATQCVQMK 113
Query: 732 HVFKMSKQYMANVALKINVKVGGRN 756
+V + + Q ++N+ LKINVK+GG N
Sbjct: 114 NVQRTTPQTLSNLCLKINVKLGGVN 138
>pdb|3LUK|A Chain A, Crystal Structure Of Mid Domain From Hago2
pdb|3LUK|B Chain B, Crystal Structure Of Mid Domain From Hago2
pdb|3LUK|C Chain C, Crystal Structure Of Mid Domain From Hago2
Length = 138
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 10/145 (6%)
Query: 614 NKKMVNGGTVNHWICINFS--RHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARP 671
NK+ G + W F+ R + + F +L ++ +G +P +
Sbjct: 2 NKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGXPIQGQPCFCKYAQGA 61
Query: 672 EHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTK 731
+ VE + H T G L L++VILP +Y ++KR+ +T LG +QC K
Sbjct: 62 DSVEPXFR---HLKNTYAG----LQLVVVILPGKT-PVYAEVKRVGDTVLGXATQCVQXK 113
Query: 732 HVFKMSKQYMANVALKINVKVGGRN 756
+V + + Q ++N+ LKINVK+GG N
Sbjct: 114 NVQRTTPQTLSNLCLKINVKLGGVN 138
>pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|A Chain A, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|Z Chain Z, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
Length = 509
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 72/137 (52%), Gaps = 7/137 (5%)
Query: 397 IDMSSTAFIEPLPVIDFVQQL-LNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMR-- 453
+D+S +F +P+I+++++ L +++ D R ++ LRG+ V T + +
Sbjct: 374 VDISHKSFPISMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSA 433
Query: 454 -RKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNY 512
R YR++GL+ TF D G ++ YF+ + + ++ Q CL VG+ +
Sbjct: 434 PRVYRVNGLSRAPASSETFEHD--GKKVTIASYFH-SRNYPLKFPQLHCLNVGSSIKSIL 490
Query: 513 LPMEVCKIVEGQRYSKR 529
LP+E+C I EGQ +++
Sbjct: 491 LPIELCSIEEGQALNRK 507
>pdb|1VYN|A Chain A, Structure And Nucleic Acid Binding Of The Drosophila
Argonaute2 Paz Domain
Length = 143
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 71/137 (51%), Gaps = 7/137 (5%)
Query: 408 LPVIDFVQQL-LNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMR---RKYRISGLTS 463
+P+I+++++ L +++ D R ++ LRG+ V T + + R YR++GL+
Sbjct: 5 MPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSR 64
Query: 464 QTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEG 523
TF D G ++ YF+ + + ++ Q CL VG+ + LP+E+C I EG
Sbjct: 65 APASSETFEHD--GKKVTIASYFH-SRNYPLKFPQLHCLNVGSSIKSILLPIELCSIEEG 121
Query: 524 QRYSKRLNERQITALLK 540
Q +++ Q+ ++K
Sbjct: 122 QALNRKDGATQVANMIK 138
>pdb|1T2R|A Chain A, Structural Basis For 3' End Recognition Of Nucleic Acids
By The Drosophila Argonaute 2 Paz Domain
pdb|1T2S|A Chain A, Structural Basis For 3' End Recognition Of Nucleic Acids
By The Drosophila Argonaute 2 Paz Domain
Length = 123
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 408 LPVIDFVQQL-LNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMR---RKYRISGLTS 463
+P+I+++++ L +++ D R ++ LRG+ V T + + R YR++GL+
Sbjct: 5 MPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSR 64
Query: 464 QTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEG 523
TF D G ++ YF+ + + ++ Q CL VG+ + LP+E+C I EG
Sbjct: 65 APASSETFEHD--GKKVTIASYFH-SRNYPLKFPQLHCLNVGSSIKSILLPIELCSIEEG 121
Query: 524 Q 524
Q
Sbjct: 122 Q 122
>pdb|3MJ0|A Chain A, Crystal Structure Of Drosophia Ago-Paz Domain In Complex
With 3'-End 2'-O-Methylated Rna
Length = 124
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 408 LPVIDFVQQL-LNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMR---RKYRISGLTS 463
+P+I+++++ L +++ D R ++ LRG+ V T + + R YR++GL+
Sbjct: 3 MPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSR 62
Query: 464 QTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEG 523
TF D G ++ YF+ + + ++ Q CL VG+ + LP+E+C I EG
Sbjct: 63 APASSETFEHD--GKKVTIASYFH-SRNYPLKFPQLHCLNVGSSIKSILLPIELCSIEEG 119
Query: 524 Q 524
Q
Sbjct: 120 Q 120
>pdb|2XDY|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid Domain
Length = 145
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 697 LLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQ--YMANVALKINVKVGG 754
++V+LP + ++Y +KR + G+ + CC+ + Q Y ANV LK+N+K GG
Sbjct: 81 FVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGG 140
Query: 755 RN 756
N
Sbjct: 141 TN 142
>pdb|1THT|A Chain A, Structure Of A Myristoyl-Acp-Specific Thioesterase From
Vibrio Harveyi
pdb|1THT|B Chain B, Structure Of A Myristoyl-Acp-Specific Thioesterase From
Vibrio Harveyi
Length = 305
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Query: 366 LGRRQPLGEGLESWRGFYQSIRPTQM---GLSLNIDMSSTAFIEPLPVIDFVQQLLNRDV 422
LG LGE L R FYQS+ + G SL ID+ FIEP DF +QL V
Sbjct: 237 LGSSHDLGENLVVLRNFYQSVTKAAIAMDGGSLEIDVD---FIEP----DF-EQLTIATV 288
Query: 423 SSRPL 427
+ R L
Sbjct: 289 NERRL 293
>pdb|4GHK|A Chain A, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|B Chain B, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|C Chain C, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|D Chain D, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
Length = 444
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 231 HQYDVTITPE--VTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFL 285
H+Y T E + +RG+ AV+ L +LYRE + R+ A D R L AG P +
Sbjct: 274 HRYGTCNTMETLLVARGIAPAVLSPLGRLYREKGVELRVDA-DARAVLEAAGVGPLV 329
>pdb|2YLA|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 379 WRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRV--KIK 436
+R Y ++R + N++ S E L +D + LN +++ ++ D + +K
Sbjct: 357 FRANYNALREELAKIPTNLEGYSK---ESLEALDAAKTALNYNLNRNKQAELDTLVANLK 413
Query: 437 KALRGVRVEVTHRGNM 452
AL+G++ VTH G++
Sbjct: 414 AALQGLKPAVTHSGSL 429
>pdb|2YL5|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 379 WRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRV--KIK 436
+R Y ++R + N++ S E L +D + LN +++ ++ D + +K
Sbjct: 357 FRANYNALREELAKIPTNLEGYSK---ESLEALDAAKTALNYNLNRNKQAELDTLVANLK 413
Query: 437 KALRGVRVEVTHRGNM 452
AL+G++ VTH G++
Sbjct: 414 AALQGLKPAVTHSGSL 429
>pdb|2YL9|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 457
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 379 WRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRV--KIK 436
+R Y ++R + N++ S E L +D + LN +++ ++ D + +K
Sbjct: 374 FRANYNALREELAKIPTNLEGYSK---ESLEALDAAKTALNYNLNRNKQAELDTLVANLK 430
Query: 437 KALRGVRVEVTHRGNM 452
AL+G++ VTH G++
Sbjct: 431 AALQGLKPAVTHSGSL 446
>pdb|3TAS|A Chain A, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|B Chain B, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|C Chain C, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TBB|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBC|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone
Length = 313
Score = 29.6 bits (65), Expect = 8.3, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 875 VTFVVVQKRHHTRLFANNHHDRNAVDRSGNIL----PGTVVDSKICHPTE-FDFYLCSHA 929
V FV++ + F + H R A +R+G + P V+D+KIC P + F F + +
Sbjct: 184 VEFVMITHGEYYHTF-HLHGHRWADNRTGMLTGPDDPSQVIDNKICGPADSFGFQVIAGE 242
Query: 930 GIQGTSRPAHYHV 942
G+ + H HV
Sbjct: 243 GVGAGAWMYHCHV 255
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,108,438
Number of Sequences: 62578
Number of extensions: 1092533
Number of successful extensions: 2193
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2132
Number of HSP's gapped (non-prelim): 31
length of query: 1047
length of database: 14,973,337
effective HSP length: 109
effective length of query: 938
effective length of database: 8,152,335
effective search space: 7646890230
effective search space used: 7646890230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)