Query 001599
Match_columns 1047
No_of_seqs 426 out of 1427
Neff 7.6
Searched_HMMs 29240
Date Tue Mar 26 16:59:15 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001599.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_896-900//hhsearch_pdb/001599hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 1.0 1 1 1585.2 70.8 822 192-1047 18-861 (861)
2 4f1n_A Kpago; argonaute, RNAI, 1.0 1 1 1473.0 51.4 824 192-1047 10-1046(1046)
3 1yvu_A Hypothetical protein AQ 1.0 1 1 844.8 33.4 650 217-995 6-696 (706)
4 2yhb_A QDE-2, post-transcripti 1.0 1 1 837.8 20.1 401 612-1047 2-437 (437)
5 1u04_A Argonaute, hypothetical 1.0 1 1 741.8 35.3 651 213-995 3-759 (771)
6 2yha_A Post-transcriptional ge 1.0 1 1 681.6 20.8 353 612-1047 2-388 (388)
7 3ho1_A Argonaute; argonaute, p 1.0 1 1 663.7 45.7 629 212-990 5-669 (685)
8 2w42_A PIWI, putative uncharac 1.0 1 1 443.5 12.2 353 586-994 5-407 (427)
9 4g0x_A Protein argonaute 1; MI 1.0 1 1 228.1 14.8 146 614-759 2-147 (147)
10 1vyn_A Argonaute2; nucleic aci 1.0 1 1 222.8 9.8 138 405-545 2-143 (143)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=1.00 E-value=1 Score=1585.22 Aligned_cols=822 Identities=43% Similarity=0.746 Sum_probs=710.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 99998775687899999999834598325886659985266578972776531000999999999997400398442451
Q 001599 192 APPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYD 271 (1047)
Q Consensus 192 ~p~~~~~~~~p~RP~~Gt~G~~v~l~tN~F~i~~~~~~iy~YdV~I~pe~~~k~~~r~i~~~l~~~~~~~~~~~~~~~yD 271 (1047)
+|.+.+...+|+||++||.|++|.|+||||++++++..+|||||+|+|+..+++++|++++++++.++...|++..+|||
T Consensus 18 ~~~~~~~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afD 97 (861)
T 4f3t_A 18 PPIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFD 97 (861)
T ss_dssp -------CCCCBCCCCCCCSEEEEEEESEEEEECCSCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCCEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 85445456679899789888478999556998778886265037847876767799999999998755665068607875
Q ss_pred CCCEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 66338841778999731899982499999998886899999992550746588874168999927899999999804988
Q 001599 272 GRKSLYTAGPLPFLSKEFRITLLDDDDGQGGQREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPT 351 (1047)
Q Consensus 272 G~~~lys~~~Lp~~~~~~~v~~~~~~~~~~~~~~~~~~V~Ik~~~~i~l~~l~~~l~~~~~~~~~~~lq~Lniilr~~~~ 351 (1047)
|+++|||+.+||+++..+++.+..+.+ .+++.|+|+|++++++++.+|.+||.+...+.+.++||+||||||+.++
T Consensus 98 G~~~l~s~~~L~~~~~~~~~~v~~~~~----~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~~~ 173 (861)
T 4f3t_A 98 GRKNLYTAMPLPIGRDKVELEVTLPGE----GKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPS 173 (861)
T ss_dssp SSSEEEESSCCSCSSCEEEEECCC-----------CEEEEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCEEEEEECCCC----CCCCEEEEEEEEEEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 863178887678778636999863788----9872799999990243889999996499878828999999999976221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCEEEEEEECCCCEEECCCCHHHHHHHHHCCCCC---CCCCC
Q ss_conf 872354654469998996458997699502201220037704664415511010575199999998427999---99999
Q 001599 352 TRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVS---SRPLS 428 (1047)
Q Consensus 352 ~~~~~~Gr~ff~~~~~~~~~lg~Gle~~~G~~~Svr~~~~~l~LniD~s~~~F~~~~~l~d~l~~~~~~~~~---~~~~~ 428 (1047)
++++.+||+||++..+...++++|+|+|+||++|||+++++|+||+|+++++|+++++|+|++.++++.... .+.++
T Consensus 174 ~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~~~~~~~ 253 (861)
T 4f3t_A 174 MRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLT 253 (861)
T ss_dssp HHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC---CCCC
T ss_pred CCCCCCCCCCCCCCCCCEECCCCCEEEEECEEEEEEECCCCCEEEECCCCEEEEECCCHHHHHHHHHCCCCHHHHCCCCC
T ss_conf 24642687755898775011689879984506789851785278541431027607709999999863455022035657
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCEEEEECCCCCCCCCEEEEEC-CCC--CEEEHHHHHHHHCCCCCCCCCCCEEEEC
Q ss_conf 6789999987043099994359867249994457899864054316-999--3521999999881986678999389935
Q 001599 429 DADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVD-ESG--TLKSVVEYFYETYGFVIQHTQWPCLQVG 505 (1047)
Q Consensus 429 ~~~~~~~~~~Lkgl~V~~~~~~~~~r~~~I~~i~~~~~~~~~F~~~-~~g--~~isV~~Yf~~~Y~i~L~~p~lP~v~~g 505 (1047)
+.++.+++++|+|++|.++|.+..+|+|+|.+|+..++.+.+|.++ ++| ++|||+|||+++|||+|+||+||||++|
T Consensus 254 ~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p~lPll~~g 333 (861)
T 4f3t_A 254 DSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVG 333 (861)
T ss_dssp HHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCTTSEEEEES
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCCEEEEHHHHHHHHCCCCCCCCCCCEEEEC
T ss_conf 78999999985793899830377886599953788998776787652789841688899998753952479997638834
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEE
Q ss_conf 68878422465247317953234599999999987415993577999999998426999710111372873653186637
Q 001599 506 NQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEAR 585 (1047)
Q Consensus 506 ~~~~~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~~~l~~fGi~i~~~~~~v~gr 585 (1047)
++++++|||||||.|+|||+|+++|+++|+++|||+++..|.+|.+.|.++++.+.++.+++|++|||+|+++|++|+||
T Consensus 334 ~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~~~~~~l~~~~~~~l~~fGi~i~~~~~~v~gR 413 (861)
T 4f3t_A 334 QEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGR 413 (861)
T ss_dssp CTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCGGGCHHHHHTTCEECSSCEEEEEE
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEECCEEEEEEE
T ss_conf 88887525656689407844556689899999999875497999999999998716897568997797883875689779
Q ss_pred EECCCCEEECCCCCCCCCCCCCCCEECCCCEEEECCCCCEEEEEEECC--CCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 708994541479984335997750110273353072104149999368--612689999999999998842964689992
Q 001599 586 ILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSR--HVQDSIARGFCFELAQMCYISGMAFNPEPV 663 (1047)
Q Consensus 586 vL~~P~i~y~~~~~~~~~~p~~G~Wn~~~~kf~~~~~i~~W~~v~~~~--~~~~~~~~~f~~~l~~~~~~~Gi~i~~~p~ 663 (1047)
|||||+|.|+++++. .+.|.+|+||+++++|+++++|++|++++|.. ...++.++.|++.|.+.|+.+||.+...|.
T Consensus 414 vL~~P~I~y~~~~~~-~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~ 492 (861)
T 4f3t_A 414 VLQPPSILYGGRNKA-IATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPC 492 (861)
T ss_dssp ECCCCCEECCSSSCC-EECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSCCS
T ss_pred EECCCEEEECCCCCC-CCCCCCCCEECCCCEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 825864885687643-3378878513569887027544405999845754445899999999999998507865479973
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 06899990559999999999998650699985199999518998415555576211357112767312113454879999
Q 001599 664 IPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMAN 743 (1047)
Q Consensus 664 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lil~ilp~~~~~~Y~~IK~~~d~~~GI~TQci~~~~~~k~~~q~~~N 743 (1047)
+.......+.++..++.+.+ .. .++||||||||++ .++|+.||++||+++||+||||+.+++.|.++||+.|
T Consensus 493 ~~~~~~~~~~~~~~~~~l~~----~~---~~~qlvl~Ilp~~-~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~n 564 (861)
T 4f3t_A 493 FCKYAQGADSVEPMFRHLKN----TY---AGLQLVVVILPGK-TPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSN 564 (861)
T ss_dssp EEEECCSSSSHHHHHHHHHH----HS---TTCCEEEEEESSS-CTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHH----HC---CCCCEEEEEECCC-CCHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 77725845789999999985----26---8983899995898-4289999997430678422899721225556789999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCHHH
Q ss_conf 99999873295233222010147777579994999653048999999998189999730788866147899960571358
Q 001599 744 VALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQEL 823 (1047)
Q Consensus 744 i~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~r~Ei 823 (1047)
|+||||+||||+||.+.+. ..|.+...+|||||+||+||++++...|||||||||+| .++++|.+.+++|.+++|+
T Consensus 565 i~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~E~ 640 (861)
T 4f3t_A 565 LCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEI 640 (861)
T ss_dssp HHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----CCCEEEEEEEECS-SSSCCEEEEEEEESTTCCS
T ss_pred HHHHHHHHCCCCCEECCCC---CCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEECC-CCCCEEEEEEEECCCCCCH
T ss_conf 9999988619833044665---46534689658998772146888778865999999847-9856587899975899558
Q ss_pred HHHHHHH-------HCC--CCCC---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCC
Q ss_conf 9999998-------429--9994---896389992569999999999999999950999999899999932012321224
Q 001599 824 IQDLFKT-------WQD--PGTP---YIFPDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFAN 891 (1047)
Q Consensus 824 I~~l~~~-------~~~--~~~P---IiyRDGVSEgq~~~Vl~~El~~Ik~A~~~~~~~~~P~it~Ivv~KrHhtRff~~ 891 (1047)
|++|.+| |.+ ...| ||||||||||||.+|+++|+++|++||.+++++|+|+||||||+||||||||+.
T Consensus 641 i~~l~~~~~~~L~~~~~~~~~~P~~IiiyRDGVsegq~~~v~~~Ev~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~ 720 (861)
T 4f3t_A 641 IQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCT 720 (861)
T ss_dssp CTTHHHHHHHHHHHHHHHHSCCCSEEEEEEESCCGGGHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEECCSCCCEEES
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEC
T ss_conf 99899999999999999828998459999268776889999999999999999985447798579999972566356225
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89997867788987672001576557985528962046874433587379994399889778999999843055423576
Q 001599 892 NHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRS 971 (1047)
Q Consensus 892 ~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTsrPthY~VL~De~~~~~d~lq~lT~~LCy~y~r~t~s 971 (1047)
+.++ ..++.+|++||||||++||||.+||||||||.++|||+|||||+||+||+++++|+||+|||+|||+|+|||++
T Consensus 721 ~~~~--~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~d~~~~~~d~lq~lty~Lc~~y~~~t~~ 798 (861)
T 4f3t_A 721 DKNE--RVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRS 798 (861)
T ss_dssp SGGG--CBTTTTBCCTTEEECSSSSCSSBCEEEEECSCCCSSCCCCEEEEEEEETTCCCHHHHHHHHHHHTTCCTTSSBC
T ss_pred CCCC--CCCCCCCCCCCEECCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8753--33446898984011575025887779998885141366676689983799999999999999986552104788
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 4467578889999999864027777899--987556778889888877766789998877899900111023580419
Q 001599 972 VSIVPPAYYAHLAAFRARFYMEPETSDS--GSMTSGTIGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVMFYC 1047 (1047)
Q Consensus 972 VSip~P~yYA~l~a~Rar~~~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~M~y~ 1047 (1047)
|||||||||||++|+|||+|+.+...++ +|+.++.+. . ....+...++.||++++|+||||
T Consensus 799 vsvpaP~yYA~~~a~R~r~~l~~~~~~~~~~~~~~~~~~-------------~--~~~~~~~~~~~vh~~~~~~M~y~ 861 (861)
T 4f3t_A 799 VSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSN-------------G--RDHQALAKAVQVHQDTLRTMYFA 861 (861)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCCC-------------------------------CCSTTHHHHTCCCHHHHTTTTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-------------C--CCHHHHHHHHHHHHHHCCCCEEC
T ss_conf 877628899999999999751101356776654468876-------------6--55355544534316551583039
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=1.00 E-value=1 Score=1472.99 Aligned_cols=824 Identities=24% Similarity=0.365 Sum_probs=659.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC---------------------CEEEEEEEECCCCCC-------
Q ss_conf 9999877568789999999983459832588665998---------------------526657897277653-------
Q 001599 192 APPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELPDK---------------------DLHQYDVTITPEVTS------- 243 (1047)
Q Consensus 192 ~p~~~~~~~~p~RP~~Gt~G~~v~l~tN~F~i~~~~~---------------------~iy~YdV~I~pe~~~------- 243 (1047)
.+.......+|.||+|||.|++|.||||||.+.+.+. .||+|+|+|.|+...
T Consensus 10 ~~~~~~~~~~p~Rp~yGt~G~~v~l~aN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~~~~~~~~~~~~~ 89 (1046)
T 4f1n_A 10 KEDTHAIYKVENRHDYGTKGTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKPQQKGPPRRGKP 89 (1046)
T ss_dssp --CCCCCCCCCBCCCCCCCSEEEEEEESEEEEECCTTSCTTTSCTTTSCCCCSTTTSCEEEEEEEEEC------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCC
T ss_conf 87761135478999889899678999637998547775433221112334443335415899889975645665444566
Q ss_pred -------CHHHHHHHHHHHHH--HHHHCCCCCCCEEECCCEEEECCCCC---CCCCEEEEEEE-----CCCCC-------
Q ss_conf -------10009999999999--97400398442451663388417789---99731899982-----49999-------
Q 001599 244 -------RGVNRAVMEQLVKL--YRESHLGKRLPAYDGRKSLYTAGPLP---FLSKEFRITLL-----DDDDG------- 299 (1047)
Q Consensus 244 -------k~~~r~i~~~l~~~--~~~~~~~~~~~~yDG~~~lys~~~Lp---~~~~~~~v~~~-----~~~~~------- 299 (1047)
++.+++|+.+|+++ .. ..+.. .+||||+++|||+.+|| +....+.|.+. ++.++
T Consensus 90 ~~~~~~~~~k~~~ii~~ll~e~~~~-~~~~~-~ia~d~~~~L~s~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 167 (1046)
T 4f1n_A 90 VPPQELSKPKKYELIEALLDEDEIL-YKYRD-RIAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQKKKVVPGMGAPSNKAS 167 (1046)
T ss_dssp -----CCHHHHHHHHHHHHHSCTTT-GGGTT-SEEECSSSEEEESSCGGGSTTCTTCCC---------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCHH-HHCCC-CEEECCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 7653221237999999999726135-64288-604647221687876776535777669865533446677665443322
Q ss_pred -----CCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCH-----HHHHHHHHHHHHCCCCCC---CCCCCC-CCCCCC
Q ss_conf -----999888689999999255074658887416899992-----789999999980498887---235465-446999
Q 001599 300 -----QGGQREREFKVVIKLAARADLHHLGLFLQGRQADAP-----QEALQVLDIVLRELPTTR---YCPVGR-SFYSPD 365 (1047)
Q Consensus 300 -----~~~~~~~~~~V~Ik~~~~i~l~~l~~~l~~~~~~~~-----~~~lq~Lniilr~~~~~~---~~~~Gr-~ff~~~ 365 (1047)
.+..++++|+|+|++++++++.+|.+||.+...+.+ .+++++|++||++.+.+. ..++|+ +||..+
T Consensus 168 ~~~~~~~~~~~~~~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~~~~~~i~~vg~nkFF~~~ 247 (1046)
T 4f1n_A 168 LQKKIDPELEEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNKFFIFN 247 (1046)
T ss_dssp ----------CGGGGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHHCSSSCEEEETTTEEEECS
T ss_pred CCCCCCCCCCCCEEEEEEEEEEECCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 23455555668459999987105179999999728985544333416789999999755655358964875784304679
Q ss_pred C-CCCCCCCCCEEEEECCEEEEECCCCEEEEEEECCCCEEECC-----------------CCHHHHHHHHHCCCC-----
Q ss_conf 8-99645899769950220122003770466441551101057-----------------519999999842799-----
Q 001599 366 L-GRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEP-----------------LPVIDFVQQLLNRDV----- 422 (1047)
Q Consensus 366 ~-~~~~~lg~Gle~~~G~~~Svr~~~~~l~LniD~s~~~F~~~-----------------~~l~d~l~~~~~~~~----- 422 (1047)
. ....+|++|+|+|+|||||||+++++|+||||+++++||++ ++|+|+|.++++...
T Consensus 248 ~~~~~~~Lg~Gle~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~~~~~~~~~~ 327 (1046)
T 4f1n_A 248 NFAKAIPFQIGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECYHQSKAIRDI 327 (1046)
T ss_dssp TTCCEEECSSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCEEEEEEEEEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 87751037881799976766678518940899725511178466667653100013568860999999986333332222
Q ss_pred -----CCCCCCHHHH-------HHHHHHCCCEEEEEEECC-------C-----CCCEEEEECCCCCCCCCEEEEECCC--
Q ss_conf -----9999996789-------999987043099994359-------8-----6724999445789986405431699--
Q 001599 423 -----SSRPLSDADR-------VKIKKALRGVRVEVTHRG-------N-----MRRKYRISGLTSQTTGELTFPVDES-- 476 (1047)
Q Consensus 423 -----~~~~~~~~~~-------~~~~~~Lkgl~V~~~~~~-------~-----~~r~~~I~~i~~~~~~~~~F~~~~~-- 476 (1047)
..+.++..++ .+++++||||+|+++|.+ + ..+.++|.||+..++.+++|++++.
T Consensus 328 ~~~~~~~~~~~~~d~~~f~~~~~kl~k~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~~~a~~~~F~~~~~~~ 407 (1046)
T 4f1n_A 328 RYNPKTAPPPSVKDLNYFVEKNTDISALLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTRESAVSMRFNVLESSL 407 (1046)
T ss_dssp SCTTTTSCCCCSSHHHHHHHHCHHHHHHHTTCEECCTTCC--------------CCCEECCEECSSCSSSCC--------
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECCCCCC
T ss_conf 22322357875566544567889999984897899986675445566524434666469863468997731996168754
Q ss_pred -----------CCEEEHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf -----------935219999998819866789993899356887842246524731795323459999999998741599
Q 001599 477 -----------GTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQR 545 (1047)
Q Consensus 477 -----------g~~isV~~Yf~~~Y~i~L~~p~lP~v~~g~~~~~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~ 545 (1047)
+++|||+|||+++|||+|+||+||||++|++ .+|||||||.|+|||+|+++|++ +++|||+||++
T Consensus 408 ~~~~~~~~g~~~~~iTVadYFk~kYni~LkyP~LPcV~VG~~--~~ylPmElC~I~pGQr~~kKL~~--ts~MIKfAa~r 483 (1046)
T 4f1n_A 408 KKNSAPKPNEKPININTIDYFKRKYDITLKYPDMKLVNLGGK--NDVVPPECLTIVPGQKLKGQIFD--TKTYIDFSAIR 483 (1046)
T ss_dssp ---------------CHHHHHHHHSCCCCSCTTSCCEECSTT--TCEECGGGCCBCTTCBCCSCCCC--HHHHHHHHCCC
T ss_pred CCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCEEEECCC--CCCCCCCEEEECCCCCCCCCCCC--HHHHHHHHCCC
T ss_conf 445666677675278899999987394047999877997897--74213104796689624512351--78999987569
Q ss_pred CHHHHHHHHHHHH-----HCCCCCCCCCCCCCEEECCCCEEEEEEEECCCCEEECCCCCC-------CCCCCCCCCEECC
Q ss_conf 3577999999998-----426999710111372873653186637708994541479984-------3359977501102
Q 001599 546 PHERERDIMQTVH-----HNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKE-------KDCLPQVGQWNMM 613 (1047)
Q Consensus 546 P~~R~~~I~~~~~-----~~~~~~~~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~~-------~~~~p~~G~Wn~~ 613 (1047)
|.+|++.|.+... .+.++.+++|++|| +|+.+|++|+|||||||.|+|+++... ..+.|++|+|||+
T Consensus 484 P~eR~~~I~~~~~~~~~~~l~~~~~~~l~~FG-~I~~~m~~V~gRVLppP~L~Yg~~~~~~~~~p~~~~~~p~~G~Wnm~ 562 (1046)
T 4f1n_A 484 PTEKFDLISRLSMPAIKRGLTDSEKEESSAPH-NSAYQFMRVPSRILDAPVVQFKESTFEYKDKSYGTKHEESKGNWNMK 562 (1046)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCC---------CCSSSCCEEEEEECCCCCEECSSCEECCCCCCSSSSGGGGTTBCCCT
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCC-CCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 49999999999887541024666557678628-75685036778874897576168754555565434457667852688
Q ss_pred CCEEEECCC-CCEEEEEEEC-C-C----CHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCC------C--CC-------
Q ss_conf 733530721-0414999936-8-6----126899999999999988429646899--92068------9--99-------
Q 001599 614 NKKMVNGGT-VNHWICINFS-R-H----VQDSIARGFCFELAQMCYISGMAFNPE--PVIPP------I--SA------- 669 (1047)
Q Consensus 614 ~~kf~~~~~-i~~W~~v~~~-~-~----~~~~~~~~f~~~l~~~~~~~Gi~i~~~--p~~~~------~--~~------- 669 (1047)
+++|++++. +.+|.++.+. . + ...+.++.|++.|++.|+.+||.+..+ |.+.. . ..
T Consensus 563 ~~kf~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~Gm~i~~~~~p~~~~~~~~~~~~~~~~~~~~r~ 642 (1046)
T 4f1n_A 563 GHQFISTPAKQVNLRAIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQGGGRGGRG 642 (1046)
T ss_dssp TCCCSBCCSSCEEEEEEEEECSSSCCCGGGHHHHHHHHHHHHHHHHTTTCCEECCSCCEEEESCCSCBC-----------
T ss_pred CCEEECCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88771378666407999972787666542389999999999999986698547877874121345543111233433323
Q ss_pred --------------------CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC-CCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf --------------------905599999999999986506999851999995189-98415555576211357112767
Q 001599 670 --------------------RPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDN-NGSLYGDLKRICETDLGLVSQCC 728 (1047)
Q Consensus 670 --------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~lil~ilp~~-~~~~Y~~IK~~~d~~~GI~TQci 728 (1047)
...+.+..|..+++. . ..++|||||||++ +.++|..||++||+++||+||||
T Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~---~~~~lvl~Ilp~~~~~~~Y~~IK~~~d~~~gV~TQcv 715 (1046)
T 4f1n_A 643 GRGSRGGRGGRGAPSGPPTFETSPGEISLLNLLEN----I---PSNTYILYVLRRGNDSAVYDRLKYITDLKFGALNSCV 715 (1046)
T ss_dssp -----------------CCCBCCTTHHHHHHHHHT----C---CTTEEEEEEESSSCCHHHHHHHHHHHTTTTCCCEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH----C---CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEE
T ss_conf 33333333333344443211123179999999974----5---8997899996688871689999997613578144898
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC----CCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCC
Q ss_conf 312113454879999999998732952332220101477775----7999499965304899999999818999973078
Q 001599 729 LTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLV----SDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDW 804 (1047)
Q Consensus 729 ~~~~~~k~~~q~~~Ni~lKiN~KlGG~N~~l~~~~~~~~p~~----~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~ 804 (1047)
+.+++.|.++||++||+||||+||||+||.|++.. ++.+ +..+|||||+||+|++++. .+||||||||+|
T Consensus 716 ~~~t~~k~~~q~~~NI~lKiN~KLGG~n~~l~~~~---~~~l~~~~~~~ptMiiG~DVtH~p~~~--~~SiaavVaS~d- 789 (1046)
T 4f1n_A 716 VWDNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIEN---NKLLIDKESNLPILVLGSDVTHYPEKD--QNSIASLVGSYD- 789 (1046)
T ss_dssp EHHHHTTCCHHHHHHHHHHHHHHTTCBCCEECTTG---GGGGEETTTTEECEEEEEEEECCSSTT--CEEEEEEEECCS-
T ss_pred EHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCCC---CCCCCCCCCCCCEEEEEEEEECCCCCC--CCEEEEEEEEEC-
T ss_conf 42351354278999999999986098511436654---432344456773499853111179899--872669999987-
Q ss_pred CCCCCEEEEEEEECC-CHHHHHHHH-------HHHCCC-C--CC---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHC--
Q ss_conf 886614789996057-135899999-------984299-9--94---8963899925699999999999999999509--
Q 001599 805 PEVTKYAGLVCAQAH-RQELIQDLF-------KTWQDP-G--TP---YIFPDGVSEGQFYQVLLYELDAIRKACASLE-- 868 (1047)
Q Consensus 805 ~~~~ky~~~~~~Q~~-r~EiI~~l~-------~~~~~~-~--~P---IiyRDGVSEgq~~~Vl~~El~~Ik~A~~~~~-- 868 (1047)
.++++|.+.+++|.+ ++|+|++|. +.|++. + .| ||||||||||||.+|+++|+++|++||.++.
T Consensus 790 ~~~t~y~s~~~~Q~~~~~Eii~~L~~~~~~~L~~y~~~n~~~lP~~IIiYRDGVSEGQf~~Vl~~Ev~~Ik~a~~~~~~~ 869 (1046)
T 4f1n_A 790 DKFTQFPGDYMLQDGPGEEIITNVGSLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEVKSIKESVRKFGPQ 869 (1046)
T ss_dssp SSCCCCCEEEEEEEEETCCSCTTGGGGHHHHHHHHHHTTTTCCCSSEEEEEESCCGGGHHHHHHTHHHHHHHHHHHHTHH
T ss_pred CCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98585835999845887248988999999999999986379998579998068765778999999999999999985430
Q ss_pred ----CCCCCCEEEEEEEECCCCCCCCCCCCCCC------CCCCCCCCCCCEECCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf ----99999899999932012321224899978------67788987672001576557985528962046874433587
Q 001599 869 ----PNYQPPVTFVVVQKRHHTRLFANNHHDRN------AVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 938 (1047)
Q Consensus 869 ----~~~~P~it~Ivv~KrHhtRff~~~~~~~~------~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTsrPt 938 (1047)
++|+|+||||||+||||||||+.+.++.+ +.++++|++||||||++||||.+||||||||.++|||||||
T Consensus 870 ~~~~~~y~Pkit~IVV~KRhhtRfF~~~~~~~d~~g~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTarPt 949 (1046)
T 4f1n_A 870 LNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVMPGTVVDRGITSVAHFDFFIQSHQALKGTGVPC 949 (1046)
T ss_dssp HHTSCCCCCCEEEEEEECSCSCCEEECCSEEECTTSCEEECEETTEECTTEEECSSSSCSSBEEEEEECSCCCSSSCCCE
T ss_pred CCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCC
T ss_conf 03455779877999996576423511455543333443234566799997286466456674128997033477766573
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 37999439988977899999984305542357644675788899999998640277778999875567788898888777
Q 001599 939 HYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGTIGRGGMGGGVGA 1018 (1047)
Q Consensus 939 hY~VL~De~~~~~d~lq~lT~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1018 (1047)
||+||+||++|++|+||+|||+|||+|+|||++|||||||||||++|+|||+|+.....+..+..++ +.++
T Consensus 950 hY~VL~De~~~~~d~lQ~LTy~LC~~y~r~t~sVsvPaP~yYAhlla~R~r~~~~~~~~~~~~~~~~-~~~~-------- 1020 (1046)
T 4f1n_A 950 HYWCLYDENQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRATCFFKAGFELNMAQAPK-EKGS-------- 1020 (1046)
T ss_dssp EEEEEEESSCCCHHHHHHHHHHTTSCCTTSSBCCSSCHHHHHHHHHHHHHHHHHHHTSHHHHHCC---------------
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCC--------
T ss_conf 7999967999998999999999865533517886255789999999999999998641202222455-6677--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 66789998877899900111023580419
Q 001599 1019 RSTRGPGVGAAVRPLPALKENVKRVMFYC 1047 (1047)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~~h~~~~~~M~y~ 1047 (1047)
++ ......+++|+.||++|+++||||
T Consensus 1021 --~~-~~~~~~~~~~~~~~~~~~~~mf~i 1046 (1046)
T 4f1n_A 1021 --KD-QPTVSKNVLLPQVNDNIKSVMYYI 1046 (1046)
T ss_dssp -------CCCHHHHSCCCCGGGTTSCTTC
T ss_pred --CC-CCCCCCCCCCCHHHHHHCCCEEEC
T ss_conf --66-555676654511335540152359
No 3
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=1.00 E-value=1 Score=844.76 Aligned_cols=650 Identities=14% Similarity=0.146 Sum_probs=485.3
Q ss_pred EEEEEEEECC-CCCEE-EEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCCCCCCEEEEEEE
Q ss_conf 8325886659-98526-657897277653100099999999999740039844245166338841778999731899982
Q 001599 217 KANHFFAELP-DKDLH-QYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLL 294 (1047)
Q Consensus 217 ~tN~F~i~~~-~~~iy-~YdV~I~pe~~~k~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~lys~~~Lp~~~~~~~v~~~ 294 (1047)
..|.|++... ..+-| .+ +-+.|+...++++.-|+.++. . | ++.|......|++.+...+ .+-....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~--~--~~~~~~~~~~~~~~~~~~~--~~~~~~~ 73 (706)
T 1yvu_A 6 LLNLYRIEYRPKDTTFTVF--KPTHEIQKEKLNKVRWRVFLQ----T--G--LPTFRREDEFWCAGKVEKD--TLYLTLS 73 (706)
T ss_dssp EESEEEEEECCSSCEEBCC--EESSCCCHHHHHHHHHHHHHH----H--C--SCEEEETTEEEESSCCTTC--CCEEEEC
T ss_pred HHHHHEEEECCCCCEEEEE--CCHHHHHHHHHHHEEEEEEEE----C--C--CCCCCCCCCCEECCCCCCC--EEEEECC
T ss_conf 5354425513677336763--450788787641201476510----1--7--8652015310343520132--4899817
Q ss_pred CCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf 499999998886899999992550746588874168999927899999999804988872354654469998996458--
Q 001599 295 DDDDGQGGQREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPL-- 372 (1047)
Q Consensus 295 ~~~~~~~~~~~~~~~V~Ik~~~~i~l~~l~~~l~~~~~~~~~~~lq~Lniilr~~~~~~~~~~Gr~ff~~~~~~~~~l-- 372 (1047)
+ .. +|+|+++++++. .......+++|+++++|+.. ..++..+||+||++. ....+
T Consensus 74 ~---------~~--~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~l~~~~igr~~~~~~--~~~~i~~ 130 (706)
T 1yvu_A 74 N---------GE--IVELKRVGEEEF---------RGFQNERECQELFRDFLTKT-KVKDKFISDFYKKFR--DKITVQG 130 (706)
T ss_dssp S---------SS--CEEEEECCCEEC---------CCCSCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH--HHHEEEC
T ss_pred C---------CC--EEEEEEEEEEEC---------CCCCCCHHHHHHHHHHHHHC-CCHHHHHCCCCCCCC--CCCCCCC
T ss_conf 9---------97--899999988615---------67899989999999999975-774755172445833--5620567
Q ss_pred -CCCEEEEECCEEEEECCC-CEEEEEEECCCCEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECC
Q ss_conf -997699502201220037-704664415511010575199999998427999999996789999987043099994359
Q 001599 373 -GEGLESWRGFYQSIRPTQ-MGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRG 450 (1047)
Q Consensus 373 -g~Gle~~~G~~~Svr~~~-~~l~LniD~s~~~F~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~Lkgl~V~~~~~~ 450 (1047)
..+||+|+||..||+..+ ++++||+|++|. |.+..+|+|+|.+ ... .. ..+..+|.
T Consensus 131 ~~~~l~iwPG~~tsi~~~e~~~~~L~~DvshK-vlr~~Tvld~l~~-~~~------~~-------------~~~~~~y~- 188 (706)
T 1yvu_A 131 KNRKIALIPEVNEKVLKSEEGYFLLHLDLKFR-IQPFETLQTLLER-NDF------NP-------------KRIRVKPI- 188 (706)
T ss_dssp SSCEEEEEEEEEEEEEEBSSSCEEEEEEEEEE-EEESSCHHHHHHH-CCC------CC-------------TTCEEEET-
T ss_pred CCCCEEECCCEEEEEEECCCCCEEEEEEEEEE-ECCCCHHHHHHHH-HHH------CC-------------HHHHHHCC-
T ss_conf 78767981686889885267875999973404-5566539999997-230------46-------------56886432-
Q ss_pred CCCCEE--EEECC-CCCCCCCEEEEECCCCCEEEHHHHHHHHCCCC--------CCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf 867249--99445-78998640543169993521999999881986--------67899938993568878422465247
Q 001599 451 NMRRKY--RISGL-TSQTTGELTFPVDESGTLKSVVEYFYETYGFV--------IQHTQWPCLQVGNQQRPNYLPMEVCK 519 (1047)
Q Consensus 451 ~~~r~~--~I~~i-~~~~~~~~~F~~~~~g~~isV~~Yf~~~Y~i~--------L~~p~lP~v~~g~~~~~~ylP~Elc~ 519 (1047)
+++| +|+++ ++...+..+|. + |..+| ||+++|+++ .+.+.+|++.... + -.|+++|.
T Consensus 189 --n~ty~~riddi~~~~~~P~~~f~-~--g~~iS---Yyk~~~~~~q~ll~~r~~~~~~~~~~v~~~--~--~~p~~lL~ 256 (706)
T 1yvu_A 189 --GIDFVGRVQDVFKAKEKGEEFFR-L--CMERS---THKSSKKAWEELLKNRELREKAFLVVLEKG--Y--TYPATILK 256 (706)
T ss_dssp --TCCCCEEEEEEEESTTSCHHHHH-H--HHHTC---SSHHHHHHHHHHHHCHHHHHHCEEEEETTS--C--EEEGGGEE
T ss_pred --CCEECCCCCCCCCCCCCCCEEEC-C--CCCCC---EEECCCCCCHHHHHCCCCCCCCCEEEECCC--C--CCCCEEEC
T ss_conf --55633365740046889513842-8--99755---585146754144430244567724884268--8--77864430
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEEEECCCCEEECCCCC
Q ss_conf 31795323459999999998741599357799999999842699971011137287365318663770899454147998
Q 001599 520 IVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGK 599 (1047)
Q Consensus 520 i~~gQ~~~~kl~~~q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~ 599 (1047)
.+ -+..+|+++|+++|+++++.+|.+|.+.|.++++.+ ++.|+.|||+|+++|++|+|||||+|+|.+..+..
T Consensus 257 pl---c~~t~Ltd~q~~~mik~t~~~P~~R~~~i~~~~~~~----~~~L~~fGi~i~~~~~~v~gRVLp~P~i~~~~g~~ 329 (706)
T 1yvu_A 257 PV---LTYENLEDEERNEVADIVRMEPGKRLNLIRYILRRY----VKALRDYGWYISPEEERAKGKLNFKDTVLDAKGKN 329 (706)
T ss_dssp EC---CCCC------HHHHTSTTSCCHHHHHHHHHHHHHHH----HHHHHTTTEEECSSCEECCEECCCCCCEECSSCCE
T ss_pred CC---CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----HHHHHHCCCEECCCEEECCCEECCCCEEECCCCCC
T ss_conf 01---213799999999999998259999999999999998----99999769888886422136873895066478974
Q ss_pred CCCCCCCCCCEECCCCEEEECCCCCE---EEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 43359977501102733530721041---499993686126899999999999988429646899920689999055999
Q 001599 600 EKDCLPQVGQWNMMNKKMVNGGTVNH---WICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEK 676 (1047)
Q Consensus 600 ~~~~~p~~G~Wn~~~~kf~~~~~i~~---W~~v~~~~~~~~~~~~~f~~~l~~~~~~~Gi~i~~~p~~~~~~~~~~~~~~ 676 (1047)
.....+..+.|+++ .+|+.++.+++ |.++ +..+ +..++.|++.|.+.|+.+||.++.++..... .+.++.
T Consensus 330 ~~~~~~~~~~~~~~-~~~~~~~~l~~~~lW~~i-~~~~--~~~~~~f~~~L~~~~~~~G~~i~~p~~~~~~---~~~~~~ 402 (706)
T 1yvu_A 330 TKVITNLRKFLELC-RPFVKKDVLSVEIISVSV-YKKL--EWRKEEFLKELINFLKNKGIKLKIKGKSLIL---AQTREE 402 (706)
T ss_dssp ECCSSCCHHHHHHC-CCCCSCSEEEEEEEEEEC--------CHHHHHHHHHHHHHHTTTCEEEEEEEEEEE---CSSTTH
T ss_pred CEECCCCCCCCCCC-CCEECCCCCCCCEEEEEE-ECCH--HHHHHHHHHHHHHHHHHCCCEECCCCCCCCC---CHHHHH
T ss_conf 30236875430003-741114325643389998-1661--6899999999999998749620687422334---001999
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEEECC-------CCCHHHHHHHHHHCCCCCEEEEEEECCCCCC-CHHHHHHHHHHH
Q ss_conf 99999999986506999851999995189-------9841555557621135711276731211345-487999999999
Q 001599 677 VLKTRYHDAMTKLGQGKELDLLIVILPDN-------NGSLYGDLKRICETDLGLVSQCCLTKHVFKM-SKQYMANVALKI 748 (1047)
Q Consensus 677 ~l~~~~~~~~~~~~~~~~~~lil~ilp~~-------~~~~Y~~IK~~~d~~~GI~TQci~~~~~~k~-~~q~~~Ni~lKi 748 (1047)
.++.+...+.+ ..+++|+|||+|++ +.++|..||++|+ ++||+||||..+++.+. +.|++.||+|||
T Consensus 403 ~~~~l~~~~~~----~~~~qlvlvIlp~~~~~~~~~~~~~Y~~IK~~~~-~~GI~TQcv~~~tl~~~~~~q~~~NI~lki 477 (706)
T 1yvu_A 403 AKEKLIPVINK----IKDVDLVIVFLEEYPKVDPYKSFLLYDFVKRELL-KKMIPSQVILNRTLKNENLKFVLLNVAEQV 477 (706)
T ss_dssp HHHHHHHHHTT----TSSCSEEEEEEC----------CHHHHHHHHHHH-HTTCCCEEEEHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC----CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH-CCCCCEEEEEHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999987500----5899589999777444455567547999999985-289854998010216653078999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCC--CCCEEEEEEEECCCHHHHHH
Q ss_conf 8732952332220101477775799949996530489999999981899997307888--66147899960571358999
Q 001599 749 NVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPE--VTKYAGLVCAQAHRQELIQD 826 (1047)
Q Consensus 749 N~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~--~~ky~~~~~~Q~~r~EiI~~ 826 (1047)
|+||||+||.|+.. ...+|||||+||+||+.+. ..||++|+|||+| .. +.+|.+....| .++|++++
T Consensus 478 N~KLGG~nw~L~~~--------~~~~tmiIGiDVsH~~~~~-~~pSv~g~vas~d-~~g~~~~~~~~~~~q-~~~ei~~~ 546 (706)
T 1yvu_A 478 LAKTGNIPYKLKEI--------EGKVDAFVGIDISRITRDG-KTVNAVAFTKIFN-SKGELVRYYLTSYPA-FGEKLTEK 546 (706)
T ss_dssp HHHTTCCSCEESCC--------TTCCSEEEEECEEECCCSS-SCCCEEEEEEEEC-TTSCEEEEEEEEECS-CTTHHHHH
T ss_pred HHHHCCEEEEECCC--------CCCCEEEEEEEEECCCCCC-CCCEEEEEEEEEC-CCCCEEEEEEEECCC-CCCHHHHH
T ss_conf 99849861560258--------8885599999886168788-8856999999985-899889999873366-64269999
Q ss_pred HHHH----HCCCC--CC---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 9998----42999--94---896389992569999999999999999950999999899999932012321224899978
Q 001599 827 LFKT----WQDPG--TP---YIFPDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRN 897 (1047)
Q Consensus 827 l~~~----~~~~~--~P---IiyRDGVSEgq~~~Vl~~El~~Ik~A~~~~~~~~~P~it~Ivv~KrHhtRff~~~~~~~~ 897 (1047)
+..+ |++.+ .| ||||||||| ++|+++|++||.+ |.|+||||||+||||||||+.+
T Consensus 547 l~~~~l~~~~~~~~~~P~rIIiyRDGVse-------~~El~~Ik~A~~~----~~pkit~IvV~Krh~tRfF~~~----- 610 (706)
T 1yvu_A 547 AIGDVFSLLEKLGFKKGSKIVVHRDGRLY-------RDEVAAFKKYGEL----YGYSLELLEIIKRNNPRFFSNE----- 610 (706)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEEESSCCC-------HHHHHHHHHHHHH----HTCEEEEEEEECSSCCCEECSC-----
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCC-------HHHHHHHHHHHHH----CCCCEEEEEEEECCCEEEECCC-----
T ss_conf 99999999998649998379999688885-------8999999999997----2994799999704671587889-----
Q ss_pred CCCCCCCCCCCEECCCCCCCCCCCCEEEEECCC-CCCCCCCCEEE-EEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 677889876720015765579855289620468-74433587379-9943998897789999998430554235764467
Q 001599 898 AVDRSGNILPGTVVDSKICHPTEFDFYLCSHAG-IQGTSRPAHYH-VLWDENKFTADGLQSLTNNLCYTYARCTRSVSIV 975 (1047)
Q Consensus 898 ~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~-~qGTsrPthY~-VL~De~~~~~d~lq~lT~~LCy~y~r~t~sVSip 975 (1047)
||+||||||. ..+||||++|.+ +|||+||+||+ |++|+ ++|+||+|||+|||+|+|||++||+|
T Consensus 611 ------np~pGTvVD~-----~~~~ffL~ss~~~~qGT~rPthY~vv~~D~---~~d~Lq~lty~Lc~ly~r~t~svslP 676 (706)
T 1yvu_A 611 ------KFIKGYFYKL-----SEDSVILATYNQVYEGTHQPIKVRKVYGEL---PVEVLCSQILSLTLMNYSSFQPIKLP 676 (706)
T ss_dssp ------SCCTTEEEEB-----SSSEEEECCSCCCSTTCCCCEEEEEEECSS---CHHHHHHHHHHGGGGGCCSSSCCCSC
T ss_pred ------CCCCEEEEEC-----CCCEEEEEECCCCCCCCCCCEEEEEEECCC---CHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf ------9997389972-----797699994477667887887999991899---99999999999898601648996047
Q ss_pred CHHHHHHHHHHHHHHHCCCC
Q ss_conf 57888999999986402777
Q 001599 976 PPAYYAHLAAFRARFYMEPE 995 (1047)
Q Consensus 976 ~P~yYA~l~a~Rar~~~~~~ 995 (1047)
+|+||||++|+|++.++.++
T Consensus 677 aPiyYAhllA~r~~~~~~p~ 696 (706)
T 1yvu_A 677 ATVHYSDKITKLMLRGIEPI 696 (706)
T ss_dssp TTTTTHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHHHCCCCC
T ss_conf 58999999999997427811
No 4
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=1.00 E-value=1 Score=837.80 Aligned_cols=401 Identities=31% Similarity=0.531 Sum_probs=335.7
Q ss_pred CCCCEEEE-CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 02733530-72104149999368612689999999999998842964689992-06899990559999999999998650
Q 001599 612 MMNKKMVN-GGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPV-IPPISARPEHVEKVLKTRYHDAMTKL 689 (1047)
Q Consensus 612 ~~~~kf~~-~~~i~~W~~v~~~~~~~~~~~~~f~~~l~~~~~~~Gi~i~~~p~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 689 (1047)
|++++|++ +++|++|++++++.+.+...++.|++.|.+.|+.+||.+..+.. +... .. ++.++.+ .++++.+.
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~-~~-~~~~~~~--~~~~~~~~- 76 (437)
T 2yhb_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSM-SV-PGSEKEF--FAKVKELM- 76 (437)
T ss_dssp ---CCCSBCCCCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEE-EC-CSSHHHH--HHHHHHHH-
T ss_pred CCCCEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEC-CC-CCHHHHH--HHHHHHCC-
T ss_conf 9888862699727779999912777879999999999999987697717998764103-77-8658887--99875045-
Q ss_pred CCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCHH--HHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 69998519999951899841555557621135711276731211345487--9999999998732952332220101477
Q 001599 690 GQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQ--YMANVALKINVKVGGRNTVLVDAISRRI 767 (1047)
Q Consensus 690 ~~~~~~~lil~ilp~~~~~~Y~~IK~~~d~~~GI~TQci~~~~~~k~~~q--~~~Ni~lKiN~KlGG~N~~l~~~~~~~~ 767 (1047)
.++||||||||+++.++|..||++||+++||+||||+.+++.|.++| |++||+||||+||||+||.|++. +
T Consensus 77 ---~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~~----~ 149 (437)
T 2yhb_A 77 ---SSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----I 149 (437)
T ss_dssp ---HTCSEEEEEESSCCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSSC----C
T ss_pred ---CCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEECCCC----C
T ss_conf ---898389999788983489999998701568541897266724766289999999999999849924023666----4
Q ss_pred CCCCCCCEEEEEEEECCCC---CC--CCCCCCEEEEEEECCCCCCCCEEEEEEEEC-CCHHHHHHHHHH-------HCC-
Q ss_conf 7757999499965304899---99--999981899997307888661478999605-713589999998-------429-
Q 001599 768 PLVSDRPTIIFGADVTHPH---PG--EDSSPSIAAVVASQDWPEVTKYAGLVCAQA-HRQELIQDLFKT-------WQD- 833 (1047)
Q Consensus 768 p~~~~~~tmiiG~DVsHp~---~g--~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~-~r~EiI~~l~~~-------~~~- 833 (1047)
|++.+.+|||||+||+||+ +| ....|||+|||||+| .++++|.+.+++|. +++|+|++|.++ |++
T Consensus 150 ~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l~~~~~~~L~~~~~~ 228 (437)
T 2yhb_A 150 PLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQFTDKFKTRLELWRSN 228 (437)
T ss_dssp HHHHTTCEEEEEEEECCCSCCCTTCCSTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECC-CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 54577877999888752565567776789997999987349-99674402789867764448999999999999999865
Q ss_pred --CC--CC---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEEEEEEEECCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf --99--94---8963899925699999999999999999509999-99899999932012321224899978677-8898
Q 001599 834 --PG--TP---YIFPDGVSEGQFYQVLLYELDAIRKACASLEPNY-QPPVTFVVVQKRHHTRLFANNHHDRNAVD-RSGN 904 (1047)
Q Consensus 834 --~~--~P---IiyRDGVSEgq~~~Vl~~El~~Ik~A~~~~~~~~-~P~it~Ivv~KrHhtRff~~~~~~~~~~~-~~~N 904 (1047)
.+ .| ||||||||||||.+|+++|+++|++||.+++++| +|+||||||+||||||||+.+..+ .+ +++|
T Consensus 229 ~~~~~~~P~rIiiyRDGVseGqf~~V~~~El~~i~~a~~~~~~~~~~p~it~Ivv~Krh~tRff~~~~~~---~~~~~~N 305 (437)
T 2yhb_A 229 PANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTDPKH---IHFKSKS 305 (437)
T ss_dssp GGGTTCCCSEEEEEEESCCTTTHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC------------------------
T ss_pred HHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEECCCCCCC---CCCCCCC
T ss_conf 5433799863899917756677999999999999999998504367987799999714553254677543---3446689
Q ss_pred CCCCEECCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCC------CCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 7672001576557985528962046874433587379994399------8897789999998430554235764467578
Q 001599 905 ILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDEN------KFTADGLQSLTNNLCYTYARCTRSVSIVPPA 978 (1047)
Q Consensus 905 ~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTsrPthY~VL~De~------~~~~d~lq~lT~~LCy~y~r~t~sVSip~P~ 978 (1047)
|+||||||++||||.+||||||||.++|||+|||||+||+||+ ++++|+||+|||+|||+|+|||++||||||+
T Consensus 306 ~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~f~~~~~~~~~d~lq~lTy~Lc~~y~r~t~sVsipaP~ 385 (437)
T 2yhb_A 306 PKEGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATKAVSICPPA 385 (437)
T ss_dssp ----------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHTC----------CHHH
T ss_pred CCCCEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 99855715644677773289973312104687638999937854323579998999999999877520315887748789
Q ss_pred HHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 88999999986402777789--9987556778889888877766789998877899900111023580419
Q 001599 979 YYAHLAAFRARFYMEPETSD--SGSMTSGTIGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVMFYC 1047 (1047)
Q Consensus 979 yYA~l~a~Rar~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~M~y~ 1047 (1047)
||||++|+|||+|+.+...+ ++|+.+++. + .+...++++|++|+++||||
T Consensus 386 yYAh~~a~R~r~~l~~~~~~~~~~~~~~~~~-------------~------~~~~~~~~~~~~l~~~mfyl 437 (437)
T 2yhb_A 386 YYADLVCDRARIHQKELFDALDENDSVKTDD-------------F------ARWGNSGAVHPNLRNSMYYI 437 (437)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTSCCCHHH-------------H------HHHHHHTSCCGGGTTSCTTC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-------------C------CCCCCCCCCCHHHCCCCEEC
T ss_conf 9999999999987454115777777667777-------------4------32223466597663783569
No 5
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=1.00 E-value=1 Score=741.77 Aligned_cols=651 Identities=14% Similarity=0.087 Sum_probs=471.5
Q ss_pred CCEEEEEEEEEEC---CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCE-EEECCCCCCCCCE
Q ss_conf 3459832588665---99852665789727765310009999999999974003984424516633-8841778999731
Q 001599 213 RCIVKANHFFAEL---PDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKS-LYTAGPLPFLSKE 288 (1047)
Q Consensus 213 ~v~l~tN~F~i~~---~~~~iy~YdV~I~pe~~~k~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~-lys~~~Lp~~~~~ 288 (1047)
++.|.+|||++.. |+ .||+|.|++.|++..+ +...++. .+++. +| -.+|||..- ||+.++|+.
T Consensus 3 ~~~~~~n~~~~~~~~~~~-~~y~y~v~~~p~~~~~-~~~~~~~----~~~~~-~g--~~~fdg~~~~l~~~~~l~~---- 69 (771)
T 1u04_A 3 KAIVVINLVKINKKIIPD-KIYVYRLFNDPEEELQ-KEGYSIY----RLAYE-NV--GIVIDPENLIIATTKELEY---- 69 (771)
T ss_dssp EEEEEBSEEEBCGGGSCS-CEEEEEC-------------CCHH----HHHHH-TT--EEEEETTTTEEEESSCCCC----
T ss_pred CEEEEEEEEEEECCCCCC-EEEEEEEECCCHHHHH-HHHHHHH----HHHHH-CC--CEEECCCCEEEECCCEECC----
T ss_conf 069994068873246887-0599986238758889-9998999----87865-37--1896475203222532146----
Q ss_pred EEEEEECCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHC-CCCCC-----CCCCCCCCC
Q ss_conf 899982499999998886899999992550746588874168999927899999999804-98887-----235465446
Q 001599 289 FRITLLDDDDGQGGQREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRE-LPTTR-----YCPVGRSFY 362 (1047)
Q Consensus 289 ~~v~~~~~~~~~~~~~~~~~~V~Ik~~~~i~l~~l~~~l~~~~~~~~~~~lq~Lniilr~-~~~~~-----~~~~Gr~ff 362 (1047)
....++++++.+.+++ +|++|+++|. +...+ +..+||+||
T Consensus 70 ---------------~~~~~~~~~~~~~~~~-------------------~~~~n~i~r~~l~~~~~~~~~l~~~~r~~~ 115 (771)
T 1u04_A 70 ---------------EGEFIPEGEISFSELR-------------------NDYQSKLVLRLLKENGIGEYELSKLLRKFR 115 (771)
T ss_dssp ---------------SSCCEEEEEECGGGSC-------------------HHHHHHHHHHHHHHTTCSHHHHHHHHTTTS
T ss_pred ---------------CCCEEEEEEEECCEEC-------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf ---------------8973789999904402-------------------999999999999874620588999766207
Q ss_pred CCCCCCCCCCCCCEEEEECCEEEEECCCCEEEEEEECCCCEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCE
Q ss_conf 99989964589976995022012200377046644155110105751999999984279999999967899999870430
Q 001599 363 SPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGV 442 (1047)
Q Consensus 363 ~~~~~~~~~lg~Gle~~~G~~~Svr~~~~~l~LniD~s~~~F~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~Lkgl 442 (1047)
++. .+ ..+++|.|+-.|||..+.+++||+|++|++ .+..+|+|+|.+.. .....+.+.+.|.
T Consensus 116 ~~~-----~~-~~~~~~~~~~tsi~~~e~~~ll~~di~hkv-~r~~t~~d~~~~~~-----------~~~~~~~~~~~g~ 177 (771)
T 1u04_A 116 KPK-----TF-GDYKVIPSVEMSVIKHDEDFYLVIHIIHQI-QSMKTLWELVNKDP-----------KELEEFLMTHKEN 177 (771)
T ss_dssp CCE-----EE-TTEEEEEEEEEEEEECSSCEEEEEEEEEEE-EESSCHHHHTTTCH-----------HHHHHHHHHSTTT
T ss_pred CCC-----CC-CCCEEEECCEEEEEECCCCEEEEEEEEEEE-EEHHHHHHHHHHHH-----------HHHHHHHHHCCCC
T ss_conf 983-----34-662799873466885378438999866567-55567999999999-----------9999888735673
Q ss_pred EEEEE--------ECCCCCCEEEEECCCCCCCCCE--EE---EECCCC-CEEEHHHHHHHHCCCCCCCCCCCEEEECCC-
Q ss_conf 99994--------3598672499944578998640--54---316999-352199999988198667899938993568-
Q 001599 443 RVEVT--------HRGNMRRKYRISGLTSQTTGEL--TF---PVDESG-TLKSVVEYFYETYGFVIQHTQWPCLQVGNQ- 507 (1047)
Q Consensus 443 ~V~~~--------~~~~~~r~~~I~~i~~~~~~~~--~F---~~~~~g-~~isV~~Yf~~~Y~i~L~~p~lP~v~~g~~- 507 (1047)
-|.+. |.-+ ++.|+|+. .++..+.. +| ..+ +| ..++..+||+++|+| ++++||+|....+
T Consensus 178 ~~~~~~~~~~~~vy~~n-~~~Y~~~~-~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~y~~~y~i--~d~~QPllvs~~~~ 252 (771)
T 1u04_A 178 LMLKDIASPLKTVYKPC-FEEYTKKP-KLDHNQEIVKYWYNYHIE-RYWNTPEAKLEFYRKFGQ--VDLKQPAILAKFAS 252 (771)
T ss_dssp CEEEETTSTTCCEEEEC-BCTTSSCB-CEECCHHHHHHHHHHHHH-HHCCSHHHHHHHHHHHCS--CCTTSCEEEEEESC
T ss_pred EEEEECCCCCEEEEECC-CCEEECCC-CCCCCCCCHHHEECEEEC-CCCCCCCHHHHHHHHCCC--CCCCCCEEEECCHH
T ss_conf 78531134442686046-62441588-512378985440130213-778874116878876486--76788769851443
Q ss_pred ------CCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--C-CC----CCCCCCCCEE
Q ss_conf ------878422465247317953234599999999987415993577999999998426--9-99----7101113728
Q 001599 508 ------QRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNA--Y-HE----DPYAREFGIK 574 (1047)
Q Consensus 508 ------~~~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~P~~R~~~I~~~~~~~~--~-~~----~~~l~~fGi~ 574 (1047)
.+.+||.||||.++. ..++++.+.+++|..++...|.+|.+.+.++.+.+. + .+ .+.|+.|+ .
T Consensus 253 ~~~~~~~~~i~LiPELc~~TG---~~~~~~~~~MK~la~~trl~P~~R~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~-~ 328 (771)
T 1u04_A 253 KIKKNKNYKIYLLPQLVVPTY---NAEQLESDVAKEILEYTKLMPEERKELLENILAEVDSDIIDKSLSEIEVEKIAQ-E 328 (771)
T ss_dssp C-----CCCEEECTTTEEEEE---EGGGC----CCHHHHHHCCCHHHHHHHHHHHHHHCCCSSBCSSCCEEEEEECCG-G
T ss_pred HCCCCCCCEEEECHHHHHHCC---CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-C
T ss_conf 246788960364247653367---435666899999999877798999999999999861544307988999975554-1
Q ss_pred ECCCCEEEEEEEECCCCEEECCCCCCCCCCCCCCCEE--CCCCEEEECCC----CCE------EEEEEECCCCHHHHHHH
Q ss_conf 7365318663770899454147998433599775011--02733530721----041------49999368612689999
Q 001599 575 ISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWN--MMNKKMVNGGT----VNH------WICINFSRHVQDSIARG 642 (1047)
Q Consensus 575 i~~~~~~v~grvL~~P~i~y~~~~~~~~~~p~~G~Wn--~~~~kf~~~~~----i~~------W~~v~~~~~~~~~~~~~ 642 (1047)
++.. +.|.++++.+-.|.+.+. .....+.|. +++.+++.+.. +++ |.++ .++. ...+.+
T Consensus 329 l~~~-~~v~~~~~~~~~i~~~~~-----~~~~~adW~~~~~~~~~~~~~~~p~~l~~~~~i~~wil~-~~~~--~~~~~~ 399 (771)
T 1u04_A 329 LENK-IRVRDDKGNSVPISQLNV-----QKSQLLLWTNYSRKYPVILPYEVPEKFRKIREIPMFIIL-DSGL--LADIQN 399 (771)
T ss_dssp GGSS-EEEECSSSCEEESCCC-------------CGGGGSCCCCCCCCSBCCTHHHHCCCCCEEEEE-ETTS--CHHHHH
T ss_pred CCCC-CCCCCCCCCCCCEEECCC-----CCCCCCCCCHHHCCCCCEECCCCHHHHHCCCCCCEEEEE-ECCC--HHHHHH
T ss_conf 1767-500254566453263276-----777667760553778511046542655043555359999-5771--688998
Q ss_pred HH---------HHHHHHHHHCC-----------CCCCCC-----CC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 99---------99999988429-----------646899-----92-068999905599999999999986506999851
Q 001599 643 FC---------FELAQMCYISG-----------MAFNPE-----PV-IPPISARPEHVEKVLKTRYHDAMTKLGQGKELD 696 (1047)
Q Consensus 643 f~---------~~l~~~~~~~G-----------i~i~~~-----p~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 696 (1047)
|+ +.|.+.+..++ |.++.. +. +.....+.+.++..++.+... ++ ...++
T Consensus 400 f~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~i~~dl~~~~~i~~~l~~~~~~----~~-~~~~~ 474 (771)
T 1u04_A 400 FATNEFRELVKSMYYSLAKKYNSLAKKARSTNEIGLPFLDFRGKEKVITEDLNSDKGIIEVVEQVSSF----MK-GKELG 474 (771)
T ss_dssp HHHHHHHHHHHHHCC-----------------------------CEEEEECTTSHHHHHHHHHHHHHH----HT-TCSCE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHH----CC-CCCCC
T ss_conf 88887666778999987532231011035664225787333467514315655347799999999975----15-78987
Q ss_pred EEEEEEE-CCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCC----C-----HHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 9999951-899841555557621135711276731211345----4-----87999999999873295233222010147
Q 001599 697 LLIVILP-DNNGSLYGDLKRICETDLGLVSQCCLTKHVFKM----S-----KQYMANVALKINVKVGGRNTVLVDAISRR 766 (1047)
Q Consensus 697 lil~ilp-~~~~~~Y~~IK~~~d~~~GI~TQci~~~~~~k~----~-----~q~~~Ni~lKiN~KlGG~N~~l~~~~~~~ 766 (1047)
|+||+++ .++.++|..||++| +++||+||||..+|+.+. + .+++.||+||||+||||+||.|+.
T Consensus 475 lvlv~l~~~~~~d~Y~~IK~~~-~~~gIpTQcV~~~Tl~~~~~k~~~~~l~~sia~NIalqIn~KLGG~pW~L~~----- 548 (771)
T 1u04_A 475 LAFIAARNKLSSEKFEEIKRRL-FNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLFQVLSKLGVKYYVLDY----- 548 (771)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH-HHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHHHHHHHHHHTTCBCCEESC-----
T ss_pred EEEEEECCCCCCCHHHHHHHHH-HCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECC-----
T ss_conf 8999975898866689999998-5489663998435006765443323132899999999999985983326068-----
Q ss_pred CCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCHH-----HHHHHHHHHCCC--C-CC-
Q ss_conf 77757999499965304899999999818999973078886614789996057135-----899999984299--9-94-
Q 001599 767 IPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQE-----LIQDLFKTWQDP--G-TP- 837 (1047)
Q Consensus 767 ~p~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~r~E-----iI~~l~~~~~~~--~-~P- 837 (1047)
| ..+|||||+||+|++++. ..+|++|+|+|.| ....+|.+.+..|.++++ ++..++..|++. . .|
T Consensus 549 -p---~~~tmiIGiDV~H~~~~~-~svs~~A~V~s~d-g~~~~~~s~~~~~~~~E~i~l~~~l~~~L~~y~~~n~~~lP~ 622 (771)
T 1u04_A 549 -R---FNYDYIIGIDVAPMKRSE-GYIGGSAVMFDSQ-GYIRKIVPIKIGEQRGESVDMNEFFKEMVDKFKEFNIKLDNK 622 (771)
T ss_dssp -C---CSSSEEEEEEEEEECCTT-TCEEEEEEEEETT-SCEEEEEEEECCCCSSSSCCHHHHHHHHHHHHHHTTCCCTTC
T ss_pred -C---CCCEEEEEEEEECCCCCC-CCEEEEEEEECCC-CCEEEEEEEEEECCCCCEECHHHHHHHHHHHHHHHHCCCCCC
T ss_conf -9---998799999987479899-7469999997799-978999888730377637739999999999999970799997
Q ss_pred --EEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf --896389992569999999999999999950999999899999932012321224899978677889876720015765
Q 001599 838 --YIFPDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKI 915 (1047)
Q Consensus 838 --IiyRDGVSEgq~~~Vl~~El~~Ik~A~~~~~~~~~P~it~Ivv~KrHhtRff~~~~~~~~~~~~~~N~~pGTVVD~~I 915 (1047)
||||||+ |+++|+++|++||.++ .|+||||+|+|||||||| .+ .+||||||
T Consensus 623 RIIiyRDG~-------v~~~El~~i~ea~~~~----~p~itfIvV~Krh~tRfF-~~------------~~pGTVV~--- 675 (771)
T 1u04_A 623 KILLLRDGR-------ITNNEEEGLKYISEMF----DIEVVTMDVIKNHPVRAF-AN------------MKMYFNLG--- 675 (771)
T ss_dssp EEEEECSBC-------CCHHHHHHHHHHHHHH----TCEEEEEEEESCCCCCBS-SC------------SCEEEEET---
T ss_pred EEEEECCCC-------CCHHHHHHHHHHHHHC----CCCEEEEEEEECCCEEEE-CC------------CCCEEEEE---
T ss_conf 799991888-------8789999999999855----998899999945751564-69------------99804996---
Q ss_pred CCCCCCCEEEEECC--CCCCCCCCCEE--EEEECCCCCC----HHHHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHHHH
Q ss_conf 57985528962046--87443358737--9994399889----77899999984305542357-6446757888999999
Q 001599 916 CHPTEFDFYLCSHA--GIQGTSRPAHY--HVLWDENKFT----ADGLQSLTNNLCYTYARCTR-SVSIVPPAYYAHLAAF 986 (1047)
Q Consensus 916 t~p~~~DFyL~Sh~--~~qGTsrPthY--~VL~De~~~~----~d~lq~lT~~LCy~y~r~t~-sVSip~P~yYA~l~a~ 986 (1047)
. ||||+||. ++|||+||+|| +||+|+++++ +|+||.|||+|||+|+||++ +||+||||||||++|+
T Consensus 676 ----~-DFyL~Sh~v~~~qGTprPthY~~~Vi~D~~~~~~~~~~D~lq~lty~Lchlyyn~~~~svrvPAP~~YAhklA~ 750 (771)
T 1u04_A 676 ----G-AIYLIPHKLKQAKGTPIPIKLAKKRIIKNGKVEKQSITRQDVLDIFILTRLNYGSISADMRLPAPVHYAHKFAN 750 (771)
T ss_dssp ----T-EEEEECSCCSSSCSCCCCEEEEEEEEEETTEEEECCCCHHHHHHHHHHHTCCTTCSSCCCCSCHHHHHHHHHHH
T ss_pred ----C-CEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf ----8-88998345458888888789997887527887877789999999998655014579999647812799999999
Q ss_pred HHHHHCCCC
Q ss_conf 986402777
Q 001599 987 RARFYMEPE 995 (1047)
Q Consensus 987 Rar~~~~~~ 995 (1047)
+++.++..+
T Consensus 751 lvgq~~~~~ 759 (771)
T 1u04_A 751 AIRNEWKIK 759 (771)
T ss_dssp HHHTTCCCC
T ss_pred HHHHHHCCC
T ss_conf 997662457
No 6
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=1.00 E-value=1 Score=681.61 Aligned_cols=353 Identities=30% Similarity=0.506 Sum_probs=291.8
Q ss_pred CCCCEEEE-CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 02733530-72104149999368612689999999999998842964689992-06899990559999999999998650
Q 001599 612 MMNKKMVN-GGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPV-IPPISARPEHVEKVLKTRYHDAMTKL 689 (1047)
Q Consensus 612 ~~~~kf~~-~~~i~~W~~v~~~~~~~~~~~~~f~~~l~~~~~~~Gi~i~~~p~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 689 (1047)
|++++|++ ++++++|++++|..+.+...++.|++.|.+.|+.+||.++.+.. +... .. ++.++.+ .++++.+.
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~-~~-~~~~~~~--~~~~~~~~- 76 (388)
T 2yha_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSM-SV-PGSEKEF--FAKVKELM- 76 (388)
T ss_dssp ---CCCSBCCSCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEE-EC-CSSHHHH--HHHHHHHH-
T ss_pred CCCCEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEC-CC-CCHHHHH--HHHHHHCC-
T ss_conf 9888851699727789999902777879999999999999987697747998754103-77-8638785--89875045-
Q ss_pred CCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCHH--HHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 69998519999951899841555557621135711276731211345487--9999999998732952332220101477
Q 001599 690 GQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQ--YMANVALKINVKVGGRNTVLVDAISRRI 767 (1047)
Q Consensus 690 ~~~~~~~lil~ilp~~~~~~Y~~IK~~~d~~~GI~TQci~~~~~~k~~~q--~~~Ni~lKiN~KlGG~N~~l~~~~~~~~ 767 (1047)
.++||||||||+++.++|..||++||+++||+||||+.+++.|.++| |++||+||||+||||+||.|++. +
T Consensus 77 ---~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~~----~ 149 (388)
T 2yha_A 77 ---SSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----I 149 (388)
T ss_dssp ---HTCSEEEEEESSSCHHHHHHHHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCSC----C
T ss_pred ---CCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEECCCC----C
T ss_conf ---898299999789983489999998710579750898345605767489999999999999718933122566----5
Q ss_pred CCCCCCCEEEEEEEECCCC---CC--CCCCCCEEEEEEECCCCCCCCEEEEEEEEC-CCHHHHHHHHHH-------HCC-
Q ss_conf 7757999499965304899---99--999981899997307888661478999605-713589999998-------429-
Q 001599 768 PLVSDRPTIIFGADVTHPH---PG--EDSSPSIAAVVASQDWPEVTKYAGLVCAQA-HRQELIQDLFKT-------WQD- 833 (1047)
Q Consensus 768 p~~~~~~tmiiG~DVsHp~---~g--~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~-~r~EiI~~l~~~-------~~~- 833 (1047)
|++.+.+|||||+||+||+ || ....|||||||||+| .++++|.+.+++|. +++|+|++|.++ |++
T Consensus 150 ~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaavVaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l~~~~~~~L~~~~~~ 228 (388)
T 2yha_A 150 PLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQFTDKFKTRLELWRSN 228 (388)
T ss_dssp HHHHTSCEEEEEEEEECSCCCSSSSCCTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECC-CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 54577877999877751565677776789987999877759-99777978999868886257999999999999999875
Q ss_pred --C--CCC---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --9--994---8963899925699999999999999999509999-9989999993201232122489997867788987
Q 001599 834 --P--GTP---YIFPDGVSEGQFYQVLLYELDAIRKACASLEPNY-QPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNI 905 (1047)
Q Consensus 834 --~--~~P---IiyRDGVSEgq~~~Vl~~El~~Ik~A~~~~~~~~-~P~it~Ivv~KrHhtRff~~~~~~~~~~~~~~N~ 905 (1047)
. ..| ||||||||||||.+|+++|+++|++||.+++++| +|+||||||+||
T Consensus 229 ~~~~~~~P~rIiiyRDGVseGQf~~V~~~El~~i~~a~~~~~~~~~~P~it~Ivv~Kr---------------------- 286 (388)
T 2yha_A 229 PANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKG---------------------- 286 (388)
T ss_dssp GGGTTCCCSEEEEEEESCCGGGHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC------------------------
T ss_pred HHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC----------------------
T ss_conf 6543789752899946867257999999999999999998514467986799996466----------------------
Q ss_pred CCCEECCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCC------CCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 672001576557985528962046874433587379994399------88977899999984305542357644675788
Q 001599 906 LPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDEN------KFTADGLQSLTNNLCYTYARCTRSVSIVPPAY 979 (1047)
Q Consensus 906 ~pGTVVD~~It~p~~~DFyL~Sh~~~qGTsrPthY~VL~De~------~~~~d~lq~lT~~LCy~y~r~t~sVSip~P~y 979 (1047)
+|||||+||+||+ ++++|+||+|||+|||+|+|||++||||||+|
T Consensus 287 -----------------------------arPthY~Vl~De~f~~~~~~~~~d~lq~lty~Lc~~y~r~t~sVsipaP~y 337 (388)
T 2yha_A 287 -----------------------------SGSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATKAVSICPPAY 337 (388)
T ss_dssp ---------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHHC----------CHHHH
T ss_pred -----------------------------CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
T ss_conf -----------------------------688269998278643345799999999999999777533258877575899
Q ss_pred HHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 899999998640277778--99987556778889888877766789998877899900111023580419
Q 001599 980 YAHLAAFRARFYMEPETS--DSGSMTSGTIGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVMFYC 1047 (1047)
Q Consensus 980 YA~l~a~Rar~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~M~y~ 1047 (1047)
|||++|+|||+|+.+... +++|+.++++ ..+...++++|++|+++||||
T Consensus 338 YAh~~a~R~r~~l~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~mfyl 388 (388)
T 2yha_A 338 YADLVCDRARIHQKELFDALDENDSVKTDD-------------------FARWGNSGAVHPNLRNSMYYI 388 (388)
T ss_dssp HHHHHHHHHHHHCHHHHHHHTTCSCCCHHH-------------------HHHHHHHTCCCGGGTTSCTTC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-------------------CCCCCCCCCCCHHHCCCCEEC
T ss_conf 999999999998554126777666667776-------------------433223466597763784369
No 7
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=1.00 E-value=1 Score=663.67 Aligned_cols=629 Identities=16% Similarity=0.141 Sum_probs=451.9
Q ss_pred CCCEEEEEEEEEE-CC--CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCCCCCCE
Q ss_conf 8345983258866-59--98526657897277653100099999999999740039844245166338841778999731
Q 001599 212 TRCIVKANHFFAE-LP--DKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKE 288 (1047)
Q Consensus 212 ~~v~l~tN~F~i~-~~--~~~iy~YdV~I~pe~~~k~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~lys~~~Lp~~~~~ 288 (1047)
.++.|.-|-|.++ +. +.+.|.|++.+.|....... ..++..++.+ +|. ++--....|+|..+ |. ...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~-~~-~~~ 74 (685)
T 3ho1_A 5 GKTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEV-YPLLAQVARR-----AGG--VTVRMGDGLASWSP-PE-VLV 74 (685)
T ss_dssp CCEEEEEEEEEEEECCTTTSSCEEEEEEEESCCCTTTH-HHHHHHHHHH-----TCS--SEEEETTEEEESSC-TT-TSC
T ss_pred CCEEEEEEEEECCCCCHHHCCEEEEEEECCCCCCCCHH-HHHHHHHHHH-----HCC--EEEEECCCEECCCC-CH-HHH
T ss_conf 52058975003454885348505899850799884147-7899999987-----387--47863274000467-05-541
Q ss_pred EEEEEECCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCHHHHHHHH-----HHHHHCCCCCCCCCCCCCCCC
Q ss_conf 899982499999998886899999992550746588874168999927899999-----999804988872354654469
Q 001599 289 FRITLLDDDDGQGGQREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVL-----DIVLRELPTTRYCPVGRSFYS 363 (1047)
Q Consensus 289 ~~v~~~~~~~~~~~~~~~~~~V~Ik~~~~i~l~~l~~~l~~~~~~~~~~~lq~L-----niilr~~~~~~~~~~Gr~ff~ 363 (1047)
.+-.+... .....|.+.-.-.+.+|...- ..+++|..| +-.|+.. +++..-|.-.+-
T Consensus 75 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 136 (685)
T 3ho1_A 75 LEGTLARM------GQTYAYRLYPKGRRPLDPKDP----------GERSVLSALARRLLQERLRRL--EGVWVEGLAVYR 136 (685)
T ss_dssp CEEEEECS------SCEEEEEEEEEEECCCCTTSH----------HHHHHHHHHHHHHHHHHHHTC--SSSEEETTEEEE
T ss_pred CCCHHCCC------CCCCCEEEEECCCCCCCCCCH----------HHHHHHHHHHHHHHHHHHHHH--HCEEECCEEEEE
T ss_conf 02200023------688663653056645788986----------788999999999999998765--333776478984
Q ss_pred CCCCCCCCCCCCEEEEECCEEEEECCC-CEEEEEEECCCCEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCE
Q ss_conf 998996458997699502201220037-7046644155110105751999999984279999999967899999870430
Q 001599 364 PDLGRRQPLGEGLESWRGFYQSIRPTQ-MGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGV 442 (1047)
Q Consensus 364 ~~~~~~~~lg~Gle~~~G~~~Svr~~~-~~l~LniD~s~~~F~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~Lkgl 442 (1047)
.. ..-|.|.|+.+|+.-.|-++. ++++|.||+.+. |+.+.++.+++.+.. . |. .
T Consensus 137 ~~----~~~~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r-~~~~~~~~~~l~~~~------------------~-~~-~ 191 (685)
T 3ho1_A 137 RE----HARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYR-ILCEMSLEAWLAQGH------------------P-LP-K 191 (685)
T ss_dssp EE----EEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEE-EEECSCHHHHHHHSC------------------C-CC-S
T ss_pred EC----CCCCCCEEEECCEEEEEEECCCCCEEEEEEEHEE-ECCHHHHHHHHHHCC------------------C-CC-H
T ss_conf 06----8877743884366999998778867999740301-147644999998179------------------8-32-7
Q ss_pred EEEEEECCCCCCEEEEECCCCCCCCCEEEEECCCCCEEEHHHHHHHHCCCCCCCCCCCEEEECCC----CC-----CCCC
Q ss_conf 99994359867249994457899864054316999352199999988198667899938993568----87-----8422
Q 001599 443 RVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQ----QR-----PNYL 513 (1047)
Q Consensus 443 ~V~~~~~~~~~r~~~I~~i~~~~~~~~~F~~~~~g~~isV~~Yf~~~Y~i~L~~p~lP~v~~g~~----~~-----~~yl 513 (1047)
.|..+|+ .++|+|..|+. ..++..|.. + .+|.+||++++|.+ +.-++|.|+-..+ .+ .+||
T Consensus 192 ~v~~~y~---~~~~~~~~~~~-~~p~~~~l~---~-~~s~~~y~~~k~~~--~~~~~~~vv~~~~~~~~~~~i~~~~~~l 261 (685)
T 3ho1_A 192 RVRNAYD---RRTWELLRLGE-EDPKELPLP---G-GLSLLDYHASKGRL--QGREGGRVAWVADPKDPRKPIPHLTGLL 261 (685)
T ss_dssp EEEESSS---CCEECCCEEEC-CCTTCC----------CSTTTTTTTSTT--TTSCCCSEEEECSCC---CCEEEETTSE
T ss_pred HHHHHCC---CCEEEEEECCC-CCCHHEECC---C-CCCHHHHHHHCCCC--CCCCCCEEEEEECCCCCCCCCEEEEEEE
T ss_conf 7764316---62489863366-893323457---8-86599997542653--3467865999955445787332442563
Q ss_pred CCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEEEECCCCEE
Q ss_conf 46524731795323459999999998741599357799999999842699971011137287365318663770899454
Q 001599 514 PMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLK 593 (1047)
Q Consensus 514 P~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~~~l~~fGi~i~~~~~~v~grvL~~P~i~ 593 (1047)
.|||| + ++ |++.+.. .++...|.+|.+.+.++++. +++.|||+ +.+|+.|+||+||||+|
T Consensus 262 ~p~l~-m-~~------l~~~~~~---~~trlsP~~R~~~l~~~~~~-------i~~~~Gl~-~~~~i~v~gRvLppp~I- 321 (685)
T 3ho1_A 262 VPVLT-L-ED------LHEEEGS---LALSLPWEERRRRTREIASW-------IGRRLGLG-TPEAVRAQAYRLSIPKL- 321 (685)
T ss_dssp EEECC-T-TT------TSSCSSC---CCCCCCHHHHHHHHHHHHHH-------HHHTTCSC-CCEEEEEEEEECCCCCE-
T ss_pred CHHHH-H-HH------HHHHHHH---CCCCCCHHHHHHHHHHHHHH-------HHHHCCCC-CCCCCEEEEEECCHHHH-
T ss_conf 22767-8-77------7666640---62567989999999999999-------88853999-89711687788388995-
Q ss_pred ECCCCCCCCCCCCCCCEECCCCEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
Q ss_conf 14799843359977501102733530721041499993686126899999999999988429646899920689999055
Q 001599 594 YHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEH 673 (1047)
Q Consensus 594 y~~~~~~~~~~p~~G~Wn~~~~kf~~~~~i~~W~~v~~~~~~~~~~~~~f~~~l~~~~~~~Gi~i~~~p~~~~~~~~~~~ 673 (1047)
+++. . + ...|++.+.+|+.++.+ .|+++++... ...+++|++.|.+.|+.+||.|.. |..... +++
T Consensus 322 ~g~~-~---~---~~~~d~~~~~~~~~~~~-~~ail~l~~~--~~~~~~f~~~L~~va~~~G~~i~~-~~~~~~---~~d 387 (685)
T 3ho1_A 322 MGRR-A---V---SKPADALRVGFYRAQET-ALALLRLDGA--QGWPEFLRRALLRAFGASGASLRL-HTLHAH---PSQ 387 (685)
T ss_dssp ESSS-B---C---SSGGGHHHHCCSSCCCE-EEEEEECSSC--CSCCHHHHHHHHHHHHSSSSCEEE-EECCCC---GGG
T ss_pred CCCC-C---C---CCCHHHCCCCCEECCCC-EEEEEECCCC--HHHHHHHHHHHHHHHHHCCCEECC-CEEECC---CCC
T ss_conf 5899-7---5---78621114753113673-5999962672--678999999999988767937635-511047---773
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99999999999986506999851999995189984155555762113571127673121134548799999999987329
Q 001599 674 VEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVG 753 (1047)
Q Consensus 674 ~~~~l~~~~~~~~~~~~~~~~~~lil~ilp~~~~~~Y~~IK~~~d~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~KlG 753 (1047)
.. .+...+++..+ .++||||||+|+++.+.|..||++| +++||+||||. +++.+.+.+++.||+||||+|||
T Consensus 388 ~~-~~~~~l~~~~~-----~~~qlvvvIlp~~~~~~y~~IKk~~-~~~GIpTQcV~-~tl~k~~~~ia~NIaLkINaKLG 459 (685)
T 3ho1_A 388 GL-AFREALRKAKE-----EGVQAVLVLTPPMAWEDRNRLKALL-LREGLPSQILN-VPLREEERHRWENALLGLLAKAG 459 (685)
T ss_dssp TH-HHHHHHHHHHH-----TTCCEEEEEESCCCHHHHHHHHHHH-HHTTCCEEEEE-SSCCTTCHHHHHHHHHHHHHHHT
T ss_pred HH-HHHHHHHHHHH-----CCCCEEEEEECCCCCCHHHHHHHHH-HCCCCCCEEEE-CCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 69-99999998642-----3998899997799954789999998-63997638996-12256407199999999988739
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCC-CCCCCEEEEEEEECCCHHHHHHHHHH--
Q ss_conf 523322201014777757999499965304899999999818999973078-88661478999605713589999998--
Q 001599 754 GRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDW-PEVTKYAGLVCAQAHRQELIQDLFKT-- 830 (1047)
Q Consensus 754 G~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~-~~~~ky~~~~~~Q~~r~EiI~~l~~~-- 830 (1047)
|+||.|+. | ..++||||+||+|++. .++++++++++- ....+| ..+..|.+.++.++++..+
T Consensus 460 G~pW~L~~------P---~~~tmiIGiDVsH~~~-----~~~~~~aav~~~dg~~~~~-~~~~~Q~~e~l~~~~L~~~l~ 524 (685)
T 3ho1_A 460 LQVVALSG------A---YPAELAVGFDAGGRES-----FRFGGAACAVGGDGGHLLW-TLPEAQAGERIPQEVVWDLLE 524 (685)
T ss_dssp CCCCEECS------C---CSCSEEEEEEEEETTE-----EEEEEEEEEECC--CCCEE-ECCCCCCSCCCHHHHHHHHHH
T ss_pred CEEEEECC------C---CCCEEEEEEEEECCCC-----CCCCEEEEEEECCCCEEEE-EEEECCCCCEECHHHHHHHHH
T ss_conf 83578568------9---9986999999973898-----9612399999788887776-788726785864999999999
Q ss_pred -----HCCC--CCC---EEECCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf -----4299--994---8963899-9256999999999999999995099999989999993201232122489997867
Q 001599 831 -----WQDP--GTP---YIFPDGV-SEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAV 899 (1047)
Q Consensus 831 -----~~~~--~~P---IiyRDGV-SEgq~~~Vl~~El~~Ik~A~~~~~~~~~P~it~Ivv~KrHhtRff~~~~~~~~~~ 899 (1047)
|++. ..| ||||||| ||+||. +|++||.++ .+++|||+|+||||||||+.+
T Consensus 525 eaL~~Y~k~ng~lP~RIIIyRDGV~se~E~~--------~I~eAl~~~----~~~~t~IvVqKRh~tRfF~~n------- 585 (685)
T 3ho1_A 525 ETLWAFRRKAGRLPSRVLLLRNGRVPQDEFA--------LALEALARE----GIAYDLVSVRKSGGGRVYPVQ------- 585 (685)
T ss_dssp HHHHHHHHHHSSCCSEEEEEECSSSCSGGGH--------HHHHHHHHT----TCEEEEEEEESSCCCCEEESS-------
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCHHHHH--------HHHHHHHHC----CCCEEEEEEEECCCCEEECCC-------
T ss_conf 9999999983899848999958989989999--------999999861----998799999916871374689-------
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCEEEEECC--CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC-CCCCCCC
Q ss_conf 788987672001576557985528962046--8744335873799943998897789999998430554235-7644675
Q 001599 900 DRSGNILPGTVVDSKICHPTEFDFYLCSHA--GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCT-RSVSIVP 976 (1047)
Q Consensus 900 ~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~--~~qGTsrPthY~VL~De~~~~~d~lq~lT~~LCy~y~r~t-~sVSip~ 976 (1047)
.++.+||+|+ .++||||++|. ++|||+||+||+ +|++++++|+||+|||+|||+|+||| ++||+|+
T Consensus 586 ---~pp~~Gt~v~------~e~d~flL~s~gsv~qGT~rPthy~--~D~~~~s~D~LQ~ltY~Lchmy~nst~~svsvPA 654 (685)
T 3ho1_A 586 ---GRLADGLYVP------LEDKTFLLLTVHRDFRGTPRPLKLV--HEAGDTPLEALAHQIFHLTRLYPASGFAFPRLPA 654 (685)
T ss_dssp ---SCCCSSEEEE------CSTTEEEEECCCCCSSSCCCCEEEE--EEEECSCHHHHHHHHHHGGGCCSSCSSSCCSSCH
T ss_pred ---CCCCCEEEEE------CCCCEEEEEECCCCCCCCCCEEEEE--ECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf ---8998759980------7897899996688876678619999--8989989999999999977751168999998675
Q ss_pred HHHHHHHHH-HHHHH
Q ss_conf 788899999-99864
Q 001599 977 PAYYAHLAA-FRARF 990 (1047)
Q Consensus 977 P~yYA~l~a-~Rar~ 990 (1047)
|+||||++| .|+|.
T Consensus 655 P~~YAhklAk~~~r~ 669 (685)
T 3ho1_A 655 PLHLADRLVKEVGRL 669 (685)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 789999999999873
No 8
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=1.00 E-value=1 Score=443.52 Aligned_cols=353 Identities=13% Similarity=0.027 Sum_probs=244.1
Q ss_pred EECCCCEEEC--CCCCCC---CCCCCCCCEECCCCEEEECCCC--CEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 7089945414--799843---3599775011027335307210--41499993686126899999999999988429646
Q 001599 586 ILPAPWLKYH--DTGKEK---DCLPQVGQWNMMNKKMVNGGTV--NHWICINFSRHVQDSIARGFCFELAQMCYISGMAF 658 (1047)
Q Consensus 586 vL~~P~i~y~--~~~~~~---~~~p~~G~Wn~~~~kf~~~~~i--~~W~~v~~~~~~~~~~~~~f~~~l~~~~~~~Gi~i 658 (1047)
-|..|.+.|+ ++.+.. ..+|..| +++...+....+ .+|++|+..+..+ .++.|.+.+.... ..++.+
T Consensus 5 ~~~ep~~~~~~~~~~~~~~~~~~~~~~g---l~~~gpy~~~~~~~~~w~vI~~~~~~~--~l~~l~~~~~~~~-g~~f~~ 78 (427)
T 2w42_A 5 KIVENGLTYRIGNGASVPISNTGELIKG---LRNYGPYEVPSLKYNQIALIHNNQFSS--LINQLKSQISSKI-DEVWHI 78 (427)
T ss_dssp ------CEEECGGGCEEESSCHHHHHHH---HHHHCCSBCCCCSSSEEEEEESCTTCH--HHHHHHHHHHHHH-HHTTCC
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCHHHH---HHHCCCCCCCCCCCCEEEEEECCCCHH--HHHHHHHHHHHCC-CCCEEE
T ss_conf 4478753441247973444456787899---986699746778898899997733089--9999987533128-984053
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE--------ECCCCCHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 89992068999905599999999999986506999851999995--------1899841555557621135711276731
Q 001599 659 NPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVIL--------PDNNGSLYGDLKRICETDLGLVSQCCLT 730 (1047)
Q Consensus 659 ~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lil~il--------p~~~~~~Y~~IK~~~d~~~GI~TQci~~ 730 (1047)
.. +. .+.+.+.+.+++... .+++++|||+ |+++.. |-.+|+ +++++||+||||..
T Consensus 79 ~~-~~-----~~~~~y~~~i~~~l~---------~~~~lvlvilp~~~~~~~~~~~~~-~y~~K~-~~~~~gvptQ~I~~ 141 (427)
T 2w42_A 79 HN-IN-----ISEFIYDSPHFDSIK---------SQVDNAIDTGVDGIMLVLPEYNTP-LYYKLK-SYLINSIPSQFMRY 141 (427)
T ss_dssp CS-CE-----EEEEECSSSSHHHHH---------HHHHHHHHHCCSEEEEEESSCCHH-HHHHHH-HHHHTTSCEEEEEG
T ss_pred CC-CC-----CCHHHHHHHHHHHHC---------CCCCEEEEEEECCCCCCCCCCCCC-HHHHHH-HHHCCCCCCEEEEH
T ss_conf 57-76-----780789999999743---------799799999976010458987750-599999-98679967589873
Q ss_pred CCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 2113454879-999999998732952332220101477775799949996530489999999981899997307888661
Q 001599 731 KHVFKMSKQY-MANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTK 809 (1047)
Q Consensus 731 ~~~~k~~~q~-~~Ni~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~k 809 (1047)
+|+.+.+.++ +.||+||||+||||+||.|+.. .| ..+|||||+||+|++++ +++|++.+.| .+...
T Consensus 142 ~tl~~~~~~~~~~nIalqi~~KlGG~pW~l~~~----~~---~~~~miiGidv~h~~~~-----~v~g~a~v~~-~~g~~ 208 (427)
T 2w42_A 142 DILSNRNLTFYVDNLLVQFVSKLGGKPWILNVD----PE---KGSDIIIGTGATRIDNV-----NLFCFAMVFK-KDGTM 208 (427)
T ss_dssp GGCCTTTHHHHHHHHHHHHHHHTTCBCCEECCC----TT---SSCSEEEEEEEEESSSS-----EEEEEEEEEC-TTSCE
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHCCCCEECCCC----CC---CCCEEEEEEEEEECCCC-----CEEEEEEEEC-CCCCE
T ss_conf 354556505699999999978738966064567----89---89869997899876999-----5799999983-89978
Q ss_pred EEEEEEEECCCHHHHHHHHHH-------HCC-CC--CC-----EEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC----C
Q ss_conf 478999605713589999998-------429-99--94-----89638999256999999999999999995099----9
Q 001599 810 YAGLVCAQAHRQELIQDLFKT-------WQD-PG--TP-----YIFPDGVSEGQFYQVLLYELDAIRKACASLEP----N 870 (1047)
Q Consensus 810 y~~~~~~Q~~r~EiI~~l~~~-------~~~-~~--~P-----IiyRDGVSEgq~~~Vl~~El~~Ik~A~~~~~~----~ 870 (1047)
+...+..|...+|++++|..+ |++ .+ .| ||| |||.+|+++|+++|++||.++.. +
T Consensus 209 ~~~~~~~~~~~~E~~~~l~~~l~~aL~~y~~~~~~~~P~~~rIii~------gq~~~v~~~Ei~~i~~a~~~~~~~~~~~ 282 (427)
T 2w42_A 209 LWNEISPIVTSSEYLTYLKSTIKKVVYGFKKSNPDWDVEKLTLHVS------GKRPKMKDGETKILKETVEELKKQEMVS 282 (427)
T ss_dssp EEEEECCCEEGGGHHHHHHHHHHHHHHHHHHHCTTCCCSEEEEEEE------SSCCSCHHHHHHHHHHHHHHHHHTTSSC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE------EECCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9998884277067999999999999999998742789982599999------2141116999999999998715443457
Q ss_pred CCCCEEEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEECCCCCC------CCC---CCEE
Q ss_conf 999899999932012-321224899978677889876720015765579855289620468744------335---8737
Q 001599 871 YQPPVTFVVVQKRHH-TRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQG------TSR---PAHY 940 (1047)
Q Consensus 871 ~~P~it~Ivv~KrHh-tRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qG------Tsr---PthY 940 (1047)
|+|+||||+|+|||| +|||..+. .+||+||||||.+ ++|||++|.+.|+ |.+ ||||
T Consensus 283 ~~~~l~~IvV~Kr~~~~r~f~~~~--------~~nP~~GTvVd~~------~~~~l~~~~g~q~~~~~~~~~~~~~Pt~y 348 (427)
T 2w42_A 283 RDVKYAILHLNETHPFWVMGDPNN--------RFHPYEGTKVKLS------SKRYLLTLLQPYLKRNGLEMVTPIKPLSV 348 (427)
T ss_dssp TTCEEEEEEEEECCCEEEEC----------------CCSEEEESS------SSEEEEEEEC---------CEEEEEEEEE
T ss_pred CCCCEEEEEEECCCCCEEEECCCC--------CCCCCCCEEEECC------CCEEEEEEEEEECCCCCCCCCCCCCCEEE
T ss_conf 888779999981666546654788--------8998996499758------98089999745236566565358898799
Q ss_pred EEEEC----CCCC-CHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 99943----9988-977899999984305542357644675788899999998640277
Q 001599 941 HVLWD----ENKF-TADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEP 994 (1047)
Q Consensus 941 ~VL~D----e~~~-~~d~lq~lT~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~~~ 994 (1047)
+|++| |+.+ ++|+||++||+|||+|+|||++||+|+|+||||++|+++.....-
T Consensus 349 ~vi~d~~~~~~~~~~~d~lq~lty~L~~~nw~~t~~v~vPap~~YAhklA~l~~~~~~~ 407 (427)
T 2w42_A 349 EIVSDNWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAGIIANVNRY 407 (427)
T ss_dssp EEEEECCCTTTHHHHHHHHHHHHHHHHTCCTTSSSCCSSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 99966876844598999999999985476568888898376507699999998656425
No 9
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=1.00 E-value=1 Score=228.15 Aligned_cols=146 Identities=88% Similarity=1.424 Sum_probs=129.2
Q ss_pred CCEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 73353072104149999368612689999999999998842964689992068999905599999999999986506999
Q 001599 614 NKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGK 693 (1047)
Q Consensus 614 ~~kf~~~~~i~~W~~v~~~~~~~~~~~~~f~~~l~~~~~~~Gi~i~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 693 (1047)
+++|++|++|++|++|+|++..+++.++.|++.|.+.|+.+||.++.+|.+.....+++++++.|+++++++.+++....
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (147)
T 4g0x_A 2 NKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATSKLSQGK 81 (147)
T ss_dssp CCCEEECCEECSEEEEECCTTCCHHHHHHHHHHHHHHHHHTTCEECSSCSSCCEECCGGGHHHHHHHHHHHHHHTSSTTC
T ss_pred CCEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 88770277467489998468776799999999999999984997799986521478817799999999999986404489
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 851999995189984155555762113571127673121134548799999999987329523322
Q 001599 694 ELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 759 (1047)
Q Consensus 694 ~~~lil~ilp~~~~~~Y~~IK~~~d~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~KlGG~N~~l 759 (1047)
+++|||||||+++.++|+.||++||+++||+||||+.+++.|.++||++||+||||+||||+||.|
T Consensus 82 ~~~lv~~il~~~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 147 (147)
T 4g0x_A 82 EIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 147 (147)
T ss_dssp CCCEEEEEECSSCTTHHHHHHHHCCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 971999996899940789999987327891658854455167778899999999977657545639
No 10
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=1.00 E-value=1 Score=222.81 Aligned_cols=138 Identities=25% Similarity=0.500 Sum_probs=120.9
Q ss_pred ECCCCHHHHHHHHHCC-CCCCCCCCHHHHHHHHHHCCCEEEEEEECC---CCCCEEEEECCCCCCCCCEEEEECCCCCEE
Q ss_conf 0575199999998427-999999996789999987043099994359---867249994457899864054316999352
Q 001599 405 IEPLPVIDFVQQLLNR-DVSSRPLSDADRVKIKKALRGVRVEVTHRG---NMRRKYRISGLTSQTTGELTFPVDESGTLK 480 (1047)
Q Consensus 405 ~~~~~l~d~l~~~~~~-~~~~~~~~~~~~~~~~~~Lkgl~V~~~~~~---~~~r~~~I~~i~~~~~~~~~F~~~~~g~~i 480 (1047)
++++||+||++++++. ........+.++.+++++|+|++|.++|.+ ..+|+|+|.+|++.++++.+|+++ |.+|
T Consensus 2 ~~~~~vidfl~~~~~~~~~~~~~~~~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~--g~~i 79 (143)
T 1vyn_A 2 AMAMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHD--GKKV 79 (143)
T ss_dssp --CEEHHHHHHHHTTSSCCSSSSCHHHHHHHSHHHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEEESS--SCEE
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEECC--CCEE
T ss_conf 88634999999986216666557566899999997498399995687766787359981056899521289749--9779
Q ss_pred EHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 19999998819866789993899356887842246524731795323459999999998741599
Q 001599 481 SVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQR 545 (1047)
Q Consensus 481 sV~~Yf~~~Y~i~L~~p~lP~v~~g~~~~~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~ 545 (1047)
||+|||+++ |++|+||+||||++|++.+++|||||||.|++||+|+++|+++|+++||++||++
T Consensus 80 sv~~Yf~~~-~~~l~~p~lP~l~~g~~~k~~ylP~ElC~i~~gQ~~~~kl~~~q~~~mik~a~~~ 143 (143)
T 1vyn_A 80 TIASYFHSR-NYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDGATQVANMIKYAATS 143 (143)
T ss_dssp EHHHHHHHT-TCCCSSTTSEEEEEECSSSEEEEEGGGEEECC-----------------------
T ss_pred EHHHHHHHC-CCCCCCCCCCEEEECCCCCCEEECCEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 899999872-9977899987587437889758511858805895224318989999999998359
Done!