BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001600
(1047 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1HEX|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With Nad+: Ligand-Induced Loop-Closing And Mechanism For
Cofactor Specificity
pdb|1XAA|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (100k)
Structure
pdb|1XAB|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (150k)
Structure
pdb|2ZTW|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With The Inhibitor And Nad+
Length = 345
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 790 FGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPS 849
FGEP+ + E E+ N + ++ + V+ AARKRR V VD +
Sbjct: 140 FGEPRGMSEA-------------EAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKA 186
Query: 850 ELLMQNNKRRKQQEDFPRNSSEEAINHGAV 879
+L RK E+ R + A+ H V
Sbjct: 187 NVLEVGEFWRKTVEEVGRGYPDVALEHQYV 216
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable
Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus
Thermophilus At 2.2 Angstroms Resolution
Length = 345
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 790 FGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPS 849
FGEP+ + E E+ N + ++ + V+ AARKRR V VD +
Sbjct: 140 FGEPRGMSEA-------------EAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKA 186
Query: 850 ELLMQNNKRRKQQEDFPRNSSEEAINHGAV 879
+L RK E+ R + A+ H V
Sbjct: 187 NVLEVGEFWRKTVEEVGRGYPDVALEHQYV 216
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from
Thermus Thermophilus
Length = 345
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 790 FGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPS 849
FGEP+ + E E+ N + ++ + V+ AARKRR V VD +
Sbjct: 140 FGEPRGMSEA-------------EAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKA 186
Query: 850 ELLMQNNKRRKQQEDFPRNSSEEAINHGAV 879
+L RK E+ R + A+ H V
Sbjct: 187 NVLEVGEFWRKTVEEVGRGYPDVALEHQYV 216
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
Length = 343
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 790 FGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPS 849
FGEP+ + E E+ N + ++ + V+ AARKRR V VD +
Sbjct: 138 FGEPRGMSEA-------------EAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKA 184
Query: 850 ELLMQNNKRRKQQEDFPRNSSEEAINHGAV 879
+L RK E+ R + A+ H V
Sbjct: 185 NVLEVGEFWRKTVEEVGRGYPDVALEHQYV 214
>pdb|3UX9|A Chain A, Structural Insights Into A Human Anti-Ifn Antibody Exerting
Therapeutic Potential For Systemic Lupus Erythematosus
pdb|3UX9|C Chain C, Structural Insights Into A Human Anti-Ifn Antibody Exerting
Therapeutic Potential For Systemic Lupus Erythematosus
Length = 169
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 16/107 (14%)
Query: 921 SILIVDKIIKISEVTCEMTDADNFINQEKIDGSQ-------NSVAESVQDIVKVGGTNDH 973
+++++ ++ +IS +C M D QE+ DG+Q + + E +Q I + T D
Sbjct: 17 TLMLLAQMSRISPSSCLMDRHDFGFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKD- 75
Query: 974 STPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKL 1020
S+ A +D++ + +E+ + DL C + +GE L
Sbjct: 76 SSAAWDEDLLDKFCTEL--------YQQLNDLEACVMQEERVGETPL 114
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (100k) Structure.
pdb|1XAD|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (150k) Structure
Length = 345
Score = 30.8 bits (68), Expect = 4.6, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 790 FGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPS 849
FGEP+ + E E+ N + ++ + V+ AARKRR V VD +
Sbjct: 140 FGEPRGMSEA-------------EAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKA 186
Query: 850 ELLMQNNKRRKQQEDFPRNSSEEAINHGAV 879
+L RK E+ R + A+ H V
Sbjct: 187 NVLEVGEFWRKTVEEVGRGYPDVALEHQYV 216
>pdb|1RJ5|A Chain A, Crystal Structure Of The Extracellular Domain Of Murine
Carbonic Anhydrase Xiv
pdb|1RJ5|B Chain B, Crystal Structure Of The Extracellular Domain Of Murine
Carbonic Anhydrase Xiv
pdb|1RJ6|A Chain A, Crystal Structure Of The Extracellular Domain Of Murine
Carbonic Anhydrase Xiv In Complex With Acetazolamide
pdb|1RJ6|B Chain B, Crystal Structure Of The Extracellular Domain Of Murine
Carbonic Anhydrase Xiv In Complex With Acetazolamide
Length = 261
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 177 LLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEE--KSNLDLTLVSLL 234
L++ N DHILS+L E+ K+++ +V E F E+ + N LT
Sbjct: 146 LIEVGETENPAYDHILSRLHEIRYKDQKTSVPPFSVRELFPQQLEQFFRYNGSLTTPPCY 205
Query: 235 KRE-EAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANH 276
+ V R A + + + L QETL+S E + + ++ N+
Sbjct: 206 QSVLWTVFNRRAQISMGQLEKL--QETLSSTEEDPSEPLVQNY 246
>pdb|2JES|A Chain A, Portal Protein From Bacteriophage Spp1
pdb|2JES|C Chain C, Portal Protein From Bacteriophage Spp1
pdb|2JES|E Chain E, Portal Protein From Bacteriophage Spp1
pdb|2JES|G Chain G, Portal Protein From Bacteriophage Spp1
pdb|2JES|I Chain I, Portal Protein From Bacteriophage Spp1
pdb|2JES|K Chain K, Portal Protein From Bacteriophage Spp1
pdb|2JES|M Chain M, Portal Protein From Bacteriophage Spp1
pdb|2JES|O Chain O, Portal Protein From Bacteriophage Spp1
pdb|2JES|Q Chain Q, Portal Protein From Bacteriophage Spp1
pdb|2JES|S Chain S, Portal Protein From Bacteriophage Spp1
pdb|2JES|U Chain U, Portal Protein From Bacteriophage Spp1
pdb|2JES|W Chain W, Portal Protein From Bacteriophage Spp1
pdb|2JES|Y Chain Y, Portal Protein From Bacteriophage Spp1
Length = 503
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 257 SQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAW 309
S + +A ++ IQK+I H +K ++Y + E++IEKKRR +
Sbjct: 22 SAKEIAEPDTTMIQKLIDEHNPEPLLK--------GVRYYMCENDIEKKRRTY 66
>pdb|2VGI|A Chain A, Human Erythrocyte Pyruvate Kinase: R486w Mutant
pdb|2VGI|B Chain B, Human Erythrocyte Pyruvate Kinase: R486w Mutant
pdb|2VGI|C Chain C, Human Erythrocyte Pyruvate Kinase: R486w Mutant
pdb|2VGI|D Chain D, Human Erythrocyte Pyruvate Kinase: R486w Mutant
Length = 528
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 64 LEKAVHEIRAESAETKVAADSKFAEARCMV---ENAQKKFAEAEAKLHAAESLQAEANRY 120
LE + + R AET A++ A C++ E A+ F K+ A + +AEA Y
Sbjct: 328 LESMITKPRPTRAETSDVANAVLDGADCIMLSGETAKGNFPVEAVKMQHAIAREAEAAVY 387
Query: 121 HRSAERKLQEVVAREDDLSR 140
H R+L E + R LSR
Sbjct: 388 H----RQLFEELRRAAPLSR 403
>pdb|4IMA|A Chain A, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
pdb|4IMA|B Chain B, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
pdb|4IMA|C Chain C, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
pdb|4IMA|D Chain D, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
Length = 543
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 64 LEKAVHEIRAESAETKVAADSKFAEARCMV---ENAQKKFAEAEAKLHAAESLQAEANRY 120
LE + + R AET A++ A C++ E A+ F K+ A + +AEA Y
Sbjct: 343 LESMITKARPTRAETSDVANAVLDGADCIMLSGETAKGNFPVEAVKMQHAIAREAEAAVY 402
Query: 121 HRSAERKLQEVVAREDDLSR 140
H R+L E + R LSR
Sbjct: 403 H----RQLFEELRRAAPLSR 418
>pdb|2VGG|A Chain A, Human Erythrocyte Pyruvate Kinase: R479h Mutant
pdb|2VGG|B Chain B, Human Erythrocyte Pyruvate Kinase: R479h Mutant
pdb|2VGG|C Chain C, Human Erythrocyte Pyruvate Kinase: R479h Mutant
pdb|2VGG|D Chain D, Human Erythrocyte Pyruvate Kinase: R479h Mutant
Length = 528
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 64 LEKAVHEIRAESAETKVAADSKFAEARCMV---ENAQKKFAEAEAKLHAAESLQAEANRY 120
LE + + R AET A++ A C++ E A+ F K+ A + +AEA Y
Sbjct: 328 LESMITKPRPTRAETSDVANAVLDGADCIMLSGETAKGNFPVEAVKMQHAIAREAEAAVY 387
Query: 121 HRSAERKLQEVVAREDDLSR 140
H R+L E + R LSR
Sbjct: 388 H----RQLFEELRRAAPLSR 403
>pdb|2VGB|A Chain A, Human Erythrocyte Pyruvate Kinase
pdb|2VGB|B Chain B, Human Erythrocyte Pyruvate Kinase
pdb|2VGB|C Chain C, Human Erythrocyte Pyruvate Kinase
pdb|2VGB|D Chain D, Human Erythrocyte Pyruvate Kinase
Length = 528
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 64 LEKAVHEIRAESAETKVAADSKFAEARCMV---ENAQKKFAEAEAKLHAAESLQAEANRY 120
LE + + R AET A++ A C++ E A+ F K+ A + +AEA Y
Sbjct: 328 LESMITKPRPTRAETSDVANAVLDGADCIMLSGETAKGNFPVEAVKMQHAIAREAEAAVY 387
Query: 121 HRSAERKLQEVVAREDDLSR 140
H R+L E + R LSR
Sbjct: 388 H----RQLFEELRRAAPLSR 403
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.125 0.327
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,426,839
Number of Sequences: 62578
Number of extensions: 840875
Number of successful extensions: 2354
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 2256
Number of HSP's gapped (non-prelim): 136
length of query: 1047
length of database: 14,973,337
effective HSP length: 109
effective length of query: 938
effective length of database: 8,152,335
effective search space: 7646890230
effective search space used: 7646890230
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.6 bits)