BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001600
         (1047 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9FLH0|NMCP_ARATH Putative nuclear matrix constituent protein 1-like protein
           OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1
          Length = 1042

 Score =  821 bits (2121), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/980 (50%), Positives = 672/980 (68%), Gaps = 103/980 (10%)

Query: 1   MGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKEC 60
           MGLL+LEK EL+S+YE+IKAS + ++L    ++++++SA+AEA+KREESLKK +G+ KEC
Sbjct: 80  MGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESLKKDVGIAKEC 139

Query: 61  IASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRY 120
           I+SLEK +HE+RAE AETKV+A S  +EA  M+E+A KK A+AEAK+ AAE+LQAEANRY
Sbjct: 140 ISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEALQAEANRY 199

Query: 121 HRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDA 180
           HR AERKL+EV +REDDL+RR+ASFK++CE KE E++ ERQ+L++R+K LQQEHERLLDA
Sbjct: 200 HRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQEHERLLDA 259

Query: 181 QTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREE-- 238
           Q  LN+REDHI ++ QEL+  EK L+ ++   EE+ KA  ++KSNL++ L    KREE  
Sbjct: 260 QVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAKREEVC 319

Query: 239 -------------------------AVIEREASLQKKEQKLLVSQETLASKESNEIQKII 273
                                    AV ERE+SL KKEQ+LLV++E +ASKES  IQ ++
Sbjct: 320 FYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKIASKESELIQNVL 379

Query: 274 ANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQ 333
           AN E  LR ++S+ EAEL  K K  E EIE KRRAWELR++D+ QRE+ + E+EHDLEVQ
Sbjct: 380 ANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLVGEKEHDLEVQ 439

Query: 334 SRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSL 393
           SRAL +KEKD+ E+S  L+EKE  L+A E++ + K ++L+ EKE +  +  +LQ+SL+SL
Sbjct: 440 SRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQSLTSL 499

Query: 394 DEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFE 453
           ++K+K+V+ A  KLEA+KSE  ELS LE+KLKEELD +RAQKLE++ E D+L++EKAKFE
Sbjct: 500 EDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFE 559

Query: 454 AEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNRER 513
           AEWE ID KREELRKEAE +  +R   S  LKDERD++++ERDA+R+QHK DV+SLNRER
Sbjct: 560 AEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHKNDVESLNRER 619

Query: 514 EEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEE 573
           EEFMNKMV EHSEW +KIQ+ERADFLLGIEMQKR+LE CIE +REELE+S R+REKAFE+
Sbjct: 620 EEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELENSSRDREKAFEQ 679

Query: 574 EKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMV 633
           EK  E ++I SLKE AEKELE V +E+KRLD ER+EI +DR+RR+REWAEL +S+EEL V
Sbjct: 680 EKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSVEELKV 739

Query: 634 QRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKR 693
           QR+KLE QR +L A+R+EI+ E E LKKLE+LK+A+D M++++MQ S LE S +K+SA  
Sbjct: 740 QREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQLSNLERSWEKVSA-- 797

Query: 694 HLNQQTSLAHADLGSDQKFD-------VTNNGDRFNTPSVQKTASASPPSLARFSWIKRF 746
            L Q+       +  D + D       V+N+ D +N+ S+++    +P S   FSWIKR 
Sbjct: 798 -LKQKV------VSRDDELDLQNGVSTVSNSEDGYNS-SMERQNGLTPSSATPFSWIKRC 849

Query: 747 ADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVV 806
            +L+FK S E S                           + + + E      VPSE    
Sbjct: 850 TNLIFKTSPEKST--------------------------LMHHYEEEGG---VPSEK--- 877

Query: 807 KRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFP 866
              + LES   +  A     S++ + + A RKRR +    + SE    NNK+RK   D  
Sbjct: 878 ---LKLESSRREEKAYTEGLSIAVERLEAGRKRRGNTSGDETSE--PSNNKKRKH--DVT 930

Query: 867 RNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVD 926
           +  S+EA     ++   N+PED+H L S +++  P G+                  +++ 
Sbjct: 931 QKYSDEADTQSVISSPQNVPEDKHELPS-SQTQTPSGM------------------VVIS 971

Query: 927 KIIKISEVTCEMTDADNFIN 946
           + +KI+ VTCE T+  N + 
Sbjct: 972 ETVKITRVTCE-TEVTNKVT 990


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.124    0.322 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 347,579,067
Number of Sequences: 539616
Number of extensions: 14933361
Number of successful extensions: 140754
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 5435
Number of HSP's that attempted gapping in prelim test: 79369
Number of HSP's gapped (non-prelim): 28672
length of query: 1047
length of database: 191,569,459
effective HSP length: 128
effective length of query: 919
effective length of database: 122,498,611
effective search space: 112576223509
effective search space used: 112576223509
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 67 (30.4 bits)