Query 001600
Match_columns 1047
No_of_seqs 40 out of 42
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 04:49:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001600.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001600hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02224 chromosome segregatio 99.4 3.9E-06 8.5E-11 100.7 64.6 18 421-438 622-639 (880)
2 KOG0161 Myosin class II heavy 99.3 5.8E-05 1.2E-09 97.8 77.4 557 80-658 904-1530(1930)
3 PRK02224 chromosome segregatio 99.1 9.9E-05 2.1E-09 88.9 71.9 92 43-138 148-239 (880)
4 TIGR00606 rad50 rad50. This fa 98.9 0.00094 2E-08 84.9 77.7 75 62-136 397-471 (1311)
5 PRK03918 chromosome segregatio 98.8 0.0012 2.7E-08 79.4 71.9 44 145-188 243-286 (880)
6 TIGR02168 SMC_prok_B chromosom 98.7 0.0029 6.2E-08 76.9 77.9 9 743-751 1019-1027(1179)
7 TIGR00606 rad50 rad50. This fa 98.7 0.0046 1E-07 78.9 76.2 84 422-505 884-967 (1311)
8 TIGR02168 SMC_prok_B chromosom 98.7 0.0031 6.7E-08 76.6 79.8 29 612-640 993-1021(1179)
9 PRK03918 chromosome segregatio 98.5 0.0075 1.6E-07 72.8 66.8 23 424-446 457-479 (880)
10 PRK01156 chromosome segregatio 98.4 0.016 3.5E-07 70.7 74.7 57 588-644 671-727 (895)
11 PRK01156 chromosome segregatio 98.3 0.025 5.5E-07 69.1 66.2 55 608-662 677-731 (895)
12 KOG0161 Myosin class II heavy 98.3 0.051 1.1E-06 71.9 79.7 41 415-455 1290-1330(1930)
13 PF12128 DUF3584: Protein of u 98.3 0.041 8.8E-07 70.1 69.0 207 413-623 594-810 (1201)
14 COG1196 Smc Chromosome segrega 98.0 0.11 2.4E-06 66.0 77.6 75 6-80 232-309 (1163)
15 KOG1029 Endocytic adaptor prot 97.8 0.027 5.8E-07 68.5 31.3 217 281-521 316-566 (1118)
16 TIGR02169 SMC_prok_A chromosom 97.8 0.21 4.5E-06 61.7 82.2 32 629-660 982-1013(1164)
17 KOG4674 Uncharacterized conser 97.8 0.36 7.9E-06 63.8 74.4 415 13-462 926-1382(1822)
18 COG0419 SbcC ATPase involved i 97.6 0.36 7.9E-06 60.0 66.0 15 618-632 742-756 (908)
19 COG1196 Smc Chromosome segrega 97.6 0.55 1.2E-05 60.0 78.3 169 40-215 195-366 (1163)
20 PF10174 Cast: RIM-binding pro 97.5 0.55 1.2E-05 58.2 63.5 323 229-563 181-533 (775)
21 PF07888 CALCOCO1: Calcium bin 97.4 0.5 1.1E-05 56.5 41.1 44 618-661 409-452 (546)
22 COG0419 SbcC ATPase involved i 97.3 0.93 2E-05 56.5 72.3 65 408-473 555-619 (908)
23 PF01576 Myosin_tail_1: Myosin 97.3 5.9E-05 1.3E-09 92.2 0.0 302 277-632 259-566 (859)
24 PF07888 CALCOCO1: Calcium bin 96.8 1.9 4.2E-05 51.8 41.3 96 422-521 353-448 (546)
25 KOG0250 DNA repair protein RAD 96.7 3.1 6.7E-05 53.2 33.5 69 599-667 732-800 (1074)
26 PF00261 Tropomyosin: Tropomyo 96.7 0.79 1.7E-05 48.8 24.3 60 168-227 92-151 (237)
27 PF00261 Tropomyosin: Tropomyo 96.6 1.2 2.7E-05 47.4 26.1 225 107-351 10-234 (237)
28 PF01576 Myosin_tail_1: Myosin 96.2 0.0011 2.5E-08 81.3 0.0 522 83-637 158-739 (859)
29 PRK12704 phosphodiesterase; Pr 96.2 0.21 4.5E-06 59.1 18.0 77 284-367 59-135 (520)
30 PRK11637 AmiB activator; Provi 96.2 2.2 4.7E-05 48.9 25.3 46 232-277 90-135 (428)
31 KOG0964 Structural maintenance 96.1 6.5 0.00014 50.2 34.8 300 139-455 172-489 (1200)
32 TIGR03319 YmdA_YtgF conserved 95.7 0.44 9.5E-06 56.4 18.0 75 284-365 53-127 (514)
33 PRK11637 AmiB activator; Provi 95.7 5.2 0.00011 45.9 26.4 43 369-411 172-214 (428)
34 PF08317 Spc7: Spc7 kinetochor 95.7 2.3 4.9E-05 47.5 22.3 166 331-502 127-292 (325)
35 PF00038 Filament: Intermediat 95.5 4.5 9.9E-05 43.9 36.8 232 423-669 58-295 (312)
36 PRK00106 hypothetical protein; 95.4 1.2 2.5E-05 53.4 20.0 75 284-365 74-148 (535)
37 PF12128 DUF3584: Protein of u 95.4 13 0.00029 48.3 72.2 68 38-105 274-341 (1201)
38 PF00038 Filament: Intermediat 95.0 6.5 0.00014 42.7 32.6 248 132-433 53-304 (312)
39 PRK12704 phosphodiesterase; Pr 95.0 0.33 7.2E-06 57.5 13.8 63 293-358 57-119 (520)
40 PHA02562 46 endonuclease subun 94.8 11 0.00024 43.9 27.6 93 388-480 306-398 (562)
41 PRK00106 hypothetical protein; 94.7 1.4 3E-05 52.8 18.0 13 829-841 475-487 (535)
42 TIGR03319 YmdA_YtgF conserved 94.7 0.42 9.1E-06 56.6 13.7 70 293-365 51-120 (514)
43 KOG0018 Structural maintenance 94.3 23 0.00049 45.9 31.8 95 425-522 302-399 (1141)
44 PF12072 DUF3552: Domain of un 94.2 1.1 2.3E-05 46.9 14.0 70 290-359 61-130 (201)
45 KOG0977 Nuclear envelope prote 93.9 20 0.00043 43.6 29.4 311 64-433 68-384 (546)
46 PHA02562 46 endonuclease subun 93.4 19 0.00042 41.9 33.4 98 368-472 307-404 (562)
47 KOG0964 Structural maintenance 93.2 34 0.00074 44.2 33.9 114 248-363 170-296 (1200)
48 PRK04863 mukB cell division pr 92.8 48 0.001 44.7 42.7 145 61-210 232-397 (1486)
49 PF05701 WEMBL: Weak chloropla 90.8 43 0.00094 40.1 47.6 147 357-521 282-428 (522)
50 PF10174 Cast: RIM-binding pro 90.8 57 0.0012 41.4 61.8 76 375-450 278-353 (775)
51 KOG0996 Structural maintenance 89.6 84 0.0018 41.5 41.6 136 380-515 475-612 (1293)
52 COG1340 Uncharacterized archae 89.6 43 0.00093 38.1 30.4 54 328-381 30-83 (294)
53 KOG1029 Endocytic adaptor prot 89.4 73 0.0016 40.6 29.9 116 373-508 316-431 (1118)
54 PRK12705 hypothetical protein; 89.3 22 0.00047 42.9 18.5 61 291-358 61-121 (508)
55 PF12072 DUF3552: Domain of un 88.9 12 0.00026 39.4 14.4 59 308-366 72-130 (201)
56 KOG0996 Structural maintenance 87.8 1.1E+02 0.0024 40.6 42.1 223 405-661 384-611 (1293)
57 PF05667 DUF812: Protein of un 87.3 84 0.0018 38.8 24.7 216 188-423 320-544 (594)
58 PF13851 GAS: Growth-arrest sp 86.7 47 0.001 35.3 19.1 143 414-573 22-168 (201)
59 KOG4674 Uncharacterized conser 86.2 1.6E+02 0.0034 40.8 75.8 344 98-457 710-1098(1822)
60 PF05557 MAD: Mitotic checkpoi 86.1 5.4 0.00012 48.9 11.5 119 102-220 90-209 (722)
61 smart00787 Spc7 Spc7 kinetocho 85.0 76 0.0016 36.1 21.8 167 330-502 121-287 (312)
62 TIGR03185 DNA_S_dndD DNA sulfu 83.9 1.1E+02 0.0025 37.3 33.6 32 39-72 160-195 (650)
63 PF08317 Spc7: Spc7 kinetochor 83.5 84 0.0018 35.4 18.7 35 426-460 230-264 (325)
64 PF05557 MAD: Mitotic checkpoi 83.0 14 0.0003 45.4 13.1 38 9-46 64-101 (722)
65 PF12718 Tropomyosin_1: Tropom 81.2 66 0.0014 32.7 16.5 90 116-216 11-100 (143)
66 PF10146 zf-C4H2: Zinc finger- 81.0 63 0.0014 35.5 15.6 77 562-646 4-80 (230)
67 KOG0612 Rho-associated, coiled 80.3 2.2E+02 0.0048 38.1 42.2 28 620-648 1016-1043(1317)
68 PRK09039 hypothetical protein; 80.2 1.2E+02 0.0025 34.9 18.7 115 49-167 64-178 (343)
69 KOG0994 Extracellular matrix g 79.5 2.4E+02 0.0051 37.9 31.6 205 155-365 1519-1740(1758)
70 PF13863 DUF4200: Domain of un 77.8 58 0.0013 31.2 12.8 88 298-395 12-99 (126)
71 TIGR01005 eps_transp_fam exopo 77.6 1.9E+02 0.0041 35.9 20.0 71 82-152 185-263 (754)
72 PF05262 Borrelia_P83: Borreli 76.4 1.3E+02 0.0028 36.5 17.7 70 339-408 189-258 (489)
73 PF06818 Fez1: Fez1; InterPro 75.1 99 0.0022 33.7 14.8 130 378-529 32-170 (202)
74 PRK12705 hypothetical protein; 74.1 1.6E+02 0.0036 35.8 17.8 60 284-347 65-124 (508)
75 TIGR02680 conserved hypothetic 73.2 3.4E+02 0.0074 36.6 29.5 88 39-128 743-830 (1353)
76 PF00769 ERM: Ezrin/radixin/mo 73.2 1.2E+02 0.0026 33.3 15.2 107 377-501 12-118 (246)
77 PF09755 DUF2046: Uncharacteri 72.1 2E+02 0.0042 33.4 20.6 30 504-533 113-142 (310)
78 PF09726 Macoilin: Transmembra 72.0 2.8E+02 0.006 35.1 26.4 54 291-352 543-597 (697)
79 TIGR03185 DNA_S_dndD DNA sulfu 71.5 2.5E+02 0.0055 34.4 36.5 47 592-638 422-468 (650)
80 PF11559 ADIP: Afadin- and alp 70.3 50 0.0011 33.0 10.7 75 331-408 72-146 (151)
81 PRK09039 hypothetical protein; 69.7 2.1E+02 0.0046 32.8 20.3 51 399-449 117-167 (343)
82 KOG0250 DNA repair protein RAD 69.0 3.9E+02 0.0084 35.6 52.0 130 63-196 278-408 (1074)
83 PF10473 CENP-F_leu_zip: Leuci 67.1 1.6E+02 0.0035 30.4 18.4 90 402-491 7-96 (140)
84 PF04111 APG6: Autophagy prote 66.9 91 0.002 35.4 13.0 16 619-634 166-181 (314)
85 KOG3200 Uncharacterized conser 66.2 12 0.00027 40.0 5.8 56 742-797 69-160 (224)
86 PF04111 APG6: Autophagy prote 65.4 88 0.0019 35.4 12.6 68 406-473 17-90 (314)
87 PF09755 DUF2046: Uncharacteri 65.4 2.7E+02 0.0057 32.3 24.5 164 436-606 30-200 (310)
88 TIGR03007 pepcterm_ChnLen poly 65.1 2.8E+02 0.0061 32.5 18.9 23 95-117 165-187 (498)
89 PF10146 zf-C4H2: Zinc finger- 62.5 1.8E+02 0.004 32.0 13.9 96 407-502 3-104 (230)
90 PF00769 ERM: Ezrin/radixin/mo 61.8 2E+02 0.0042 31.7 14.0 123 96-218 3-125 (246)
91 KOG0804 Cytoplasmic Zn-finger 61.4 2.3E+02 0.0049 34.5 15.1 108 426-556 347-454 (493)
92 KOG0612 Rho-associated, coiled 60.9 5.7E+02 0.012 34.7 48.0 38 898-936 1127-1164(1317)
93 PF12126 DUF3583: Protein of u 60.5 2.8E+02 0.0061 32.1 15.0 121 382-513 4-124 (324)
94 KOG4643 Uncharacterized coiled 60.4 5.5E+02 0.012 34.3 46.5 131 330-460 413-550 (1195)
95 PRK04863 mukB cell division pr 59.9 6.3E+02 0.014 34.9 46.1 45 119-167 293-337 (1486)
96 PF09728 Taxilin: Myosin-like 57.7 3.4E+02 0.0073 31.0 34.9 66 577-642 230-309 (309)
97 PLN03188 kinesin-12 family pro 56.8 4.8E+02 0.01 35.4 18.0 151 45-221 1079-1250(1320)
98 COG4942 Membrane-bound metallo 56.7 4.3E+02 0.0093 31.9 29.3 78 375-455 169-246 (420)
99 COG4026 Uncharacterized protei 56.0 73 0.0016 35.5 9.5 82 415-500 119-205 (290)
100 KOG0977 Nuclear envelope prote 55.0 5.1E+02 0.011 32.2 35.5 57 552-619 321-377 (546)
101 COG1579 Zn-ribbon protein, pos 54.5 3.5E+02 0.0076 30.3 22.9 91 438-532 94-184 (239)
102 COG1340 Uncharacterized archae 52.1 4.3E+02 0.0093 30.5 28.8 24 550-573 133-156 (294)
103 PF05483 SCP-1: Synaptonemal c 49.5 6.9E+02 0.015 32.1 67.8 309 145-472 231-566 (786)
104 PF10186 Atg14: UV radiation r 49.1 3.6E+02 0.0078 28.8 17.1 91 184-274 65-155 (302)
105 COG2433 Uncharacterized conser 48.0 1.9E+02 0.004 36.3 12.0 73 400-476 424-496 (652)
106 PRK00409 recombination and DNA 45.8 4.5E+02 0.0098 33.6 15.3 105 190-294 489-593 (782)
107 PF12329 TMF_DNA_bd: TATA elem 44.6 2.1E+02 0.0046 26.3 9.3 67 386-462 3-69 (74)
108 PRK00409 recombination and DNA 43.8 3.3E+02 0.0072 34.7 13.8 45 358-402 518-562 (782)
109 PF03962 Mnd1: Mnd1 family; I 42.9 3.8E+02 0.0082 28.5 12.1 38 380-417 65-102 (188)
110 PF07926 TPR_MLP1_2: TPR/MLP1/ 42.1 3.6E+02 0.0078 26.8 17.0 99 377-478 17-115 (132)
111 PF04871 Uso1_p115_C: Uso1 / p 41.7 4E+02 0.0086 27.2 14.3 37 406-442 78-114 (136)
112 PRK06800 fliH flagellar assemb 41.6 84 0.0018 34.2 7.1 49 610-658 36-84 (228)
113 TIGR01843 type_I_hlyD type I s 40.2 5.7E+02 0.012 28.6 19.1 49 134-182 131-179 (423)
114 PF05701 WEMBL: Weak chloropla 40.2 7.6E+02 0.017 30.0 48.6 111 141-261 124-234 (522)
115 PF07106 TBPIP: Tat binding pr 39.5 3.1E+02 0.0068 28.0 10.6 32 377-408 72-103 (169)
116 PTZ00266 NIMA-related protein 39.5 3.2E+02 0.0069 36.1 12.9 8 993-1000 918-925 (1021)
117 PF03962 Mnd1: Mnd1 family; I 39.1 4.9E+02 0.011 27.7 12.2 27 424-450 74-100 (188)
118 PF08614 ATG16: Autophagy prot 38.4 3.2E+02 0.007 28.6 10.8 77 150-226 70-146 (194)
119 PF14988 DUF4515: Domain of un 38.3 5.5E+02 0.012 27.8 14.7 111 515-625 7-127 (206)
120 PF11932 DUF3450: Protein of u 37.5 5.7E+02 0.012 27.8 13.6 70 422-491 38-114 (251)
121 PF06476 DUF1090: Protein of u 36.7 1.2E+02 0.0026 30.2 6.9 44 61-104 45-90 (115)
122 KOG0804 Cytoplasmic Zn-finger 36.3 8.7E+02 0.019 29.9 14.7 75 323-400 373-447 (493)
123 PF03904 DUF334: Domain of unk 35.9 6.8E+02 0.015 28.2 14.8 111 426-542 43-154 (230)
124 PF10473 CENP-F_leu_zip: Leuci 35.4 5.3E+02 0.011 26.8 16.6 100 166-265 1-100 (140)
125 PF14662 CCDC155: Coiled-coil 35.4 6.4E+02 0.014 27.7 19.2 167 60-226 9-188 (193)
126 TIGR01069 mutS2 MutS2 family p 34.4 8.5E+02 0.019 31.2 15.2 101 189-289 483-583 (771)
127 TIGR01005 eps_transp_fam exopo 34.3 1E+03 0.022 29.7 18.4 51 62-112 211-265 (754)
128 TIGR01069 mutS2 MutS2 family p 33.9 7.5E+02 0.016 31.7 14.6 22 9-30 34-55 (771)
129 KOG1853 LIS1-interacting prote 33.4 8E+02 0.017 28.3 15.4 82 124-212 50-131 (333)
130 KOG0946 ER-Golgi vesicle-tethe 33.4 1.3E+03 0.027 30.6 26.6 75 194-276 679-753 (970)
131 KOG4661 Hsp27-ERE-TATA-binding 33.0 5.7E+02 0.012 32.3 12.7 20 519-538 681-700 (940)
132 KOG3915 Transcription regulato 32.6 2.7E+02 0.0059 34.0 9.9 30 419-448 507-536 (641)
133 PRK15422 septal ring assembly 32.1 3E+02 0.0065 26.4 8.2 55 399-453 12-66 (79)
134 PF02841 GBP_C: Guanylate-bind 32.0 7.6E+02 0.016 27.6 15.5 9 60-68 41-49 (297)
135 KOG1103 Predicted coiled-coil 31.4 9.8E+02 0.021 28.7 15.8 26 753-778 421-447 (561)
136 TIGR03017 EpsF chain length de 31.4 8.6E+02 0.019 28.0 19.4 43 80-122 160-202 (444)
137 PRK04778 septation ring format 31.1 1.1E+03 0.023 29.0 43.8 411 145-661 89-521 (569)
138 PF09789 DUF2353: Uncharacteri 31.0 9.2E+02 0.02 28.2 23.2 206 370-591 2-228 (319)
139 TIGR03007 pepcterm_ChnLen poly 30.8 9.4E+02 0.02 28.3 17.9 24 53-76 169-192 (498)
140 PTZ00266 NIMA-related protein 30.8 5.1E+02 0.011 34.4 12.7 10 651-660 528-537 (1021)
141 KOG0976 Rho/Rac1-interacting s 30.4 1.4E+03 0.031 30.2 45.8 373 238-659 92-471 (1265)
142 PF15066 CAGE1: Cancer-associa 28.4 1.2E+03 0.026 28.8 21.7 85 410-498 406-490 (527)
143 PF09789 DUF2353: Uncharacteri 28.3 1E+03 0.022 27.9 26.1 40 627-666 190-229 (319)
144 PF06428 Sec2p: GDP/GTP exchan 27.7 1.5E+02 0.0032 29.1 5.7 66 53-121 2-67 (100)
145 PF11068 YlqD: YlqD protein; 27.4 6.7E+02 0.015 25.7 10.5 73 575-663 18-90 (131)
146 PF05622 HOOK: HOOK protein; 27.4 20 0.00044 44.0 0.0 154 126-293 193-357 (713)
147 PRK15422 septal ring assembly 27.1 5.8E+02 0.013 24.6 9.6 59 417-479 6-64 (79)
148 PF10234 Cluap1: Clusterin-ass 26.9 5.3E+02 0.011 29.4 10.6 84 348-434 157-244 (267)
149 COG1842 PspA Phage shock prote 26.6 9E+02 0.02 26.7 12.7 106 64-182 29-134 (225)
150 KOG3859 Septins (P-loop GTPase 26.4 6.1E+02 0.013 29.8 10.9 52 330-384 350-401 (406)
151 KOG2350 Zn-finger protein join 26.0 75 0.0016 34.7 3.8 50 732-788 55-110 (221)
152 PRK11519 tyrosine kinase; Prov 25.8 1.4E+03 0.031 28.7 15.4 40 81-120 257-296 (719)
153 PRK10884 SH3 domain-containing 25.4 7.4E+02 0.016 27.0 11.0 22 424-445 144-165 (206)
154 PF02841 GBP_C: Guanylate-bind 25.2 9.9E+02 0.021 26.7 13.8 8 358-365 199-206 (297)
155 cd07647 F-BAR_PSTPIP The F-BAR 24.6 9.1E+02 0.02 26.1 18.2 48 494-542 168-215 (239)
156 TIGR02680 conserved hypothetic 24.3 2E+03 0.043 29.9 28.3 59 547-605 1085-1145(1353)
157 PF09744 Jnk-SapK_ap_N: JNK_SA 24.1 8.6E+02 0.019 25.6 12.5 68 319-392 83-157 (158)
158 PF09787 Golgin_A5: Golgin sub 24.1 1.3E+03 0.029 27.9 28.5 18 602-619 410-427 (511)
159 PF10212 TTKRSYEDQ: Predicted 23.8 7.8E+02 0.017 30.6 11.8 112 127-244 403-514 (518)
160 PF05622 HOOK: HOOK protein; 23.4 27 0.00058 43.1 0.0 79 316-395 303-381 (713)
161 smart00502 BBC B-Box C-termina 22.9 6E+02 0.013 23.4 11.4 37 526-562 50-86 (127)
162 PF15254 CCDC14: Coiled-coil d 22.9 1.7E+03 0.036 29.4 14.5 97 447-550 441-537 (861)
163 COG4942 Membrane-bound metallo 22.8 1.4E+03 0.031 27.7 27.1 40 167-206 51-90 (420)
164 KOG0980 Actin-binding protein 22.7 1.9E+03 0.042 29.2 26.7 236 50-293 349-603 (980)
165 KOG2891 Surface glycoprotein [ 22.7 1.3E+03 0.028 27.1 13.7 93 185-283 344-438 (445)
166 PRK10246 exonuclease subunit S 22.6 1.9E+03 0.041 29.1 72.5 51 41-91 164-223 (1047)
167 TIGR01010 BexC_CtrB_KpsE polys 22.4 1E+03 0.023 26.9 12.0 20 163-182 216-235 (362)
168 PRK09841 cryptic autophosphory 22.0 1.7E+03 0.036 28.2 17.0 35 219-253 351-385 (726)
169 smart00806 AIP3 Actin interact 20.9 1.6E+03 0.034 27.5 15.7 126 66-193 155-307 (426)
170 PF05262 Borrelia_P83: Borreli 20.8 1.6E+03 0.035 27.7 16.2 38 182-219 185-222 (489)
171 KOG1003 Actin filament-coating 20.6 1.2E+03 0.026 26.0 22.3 120 241-394 84-203 (205)
172 KOG0018 Structural maintenance 20.6 2.2E+03 0.049 29.2 56.6 224 426-666 652-901 (1141)
173 PRK10884 SH3 domain-containing 20.4 7E+02 0.015 27.2 9.7 52 175-226 118-169 (206)
174 PF10498 IFT57: Intra-flagella 20.4 1.4E+03 0.029 27.0 12.6 135 267-404 198-337 (359)
175 PF05529 Bap31: B-cell recepto 20.2 5.9E+02 0.013 26.5 8.8 35 422-456 157-191 (192)
176 PRK11281 hypothetical protein; 20.1 2.3E+03 0.049 29.0 27.2 122 152-273 126-262 (1113)
No 1
>PRK02224 chromosome segregation protein; Provisional
Probab=99.37 E-value=3.9e-06 Score=100.67 Aligned_cols=18 Identities=33% Similarity=0.329 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 001600 421 EIKLKEELDVVRAQKLEL 438 (1047)
Q Consensus 421 QseLKeEId~~R~Qke~L 438 (1047)
..+++++|...|.+...|
T Consensus 622 ~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 622 NDERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334555555555555444
No 2
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.25 E-value=5.8e-05 Score=97.85 Aligned_cols=557 Identities=21% Similarity=0.260 Sum_probs=308.6
Q ss_pred hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHH
Q 001600 80 VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRE 159 (1047)
Q Consensus 80 ~taesKLaEA~aLv~~~eeKs~EaE~KL~aAea~~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~aE~ea~E~~~~~q 159 (1047)
...+..|.+...=+...+++...++.+...++... .++...+.++|.--..++++...........++++...
T Consensus 904 ~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~-------~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~ 976 (1930)
T KOG0161|consen 904 QELEKELKELKERLEEEEEKNAELERKKRKLEQEV-------QELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSL 976 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555554444221 22333333444433444444444445555555556655
Q ss_pred HhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhh-------hhhHhHHH
Q 001600 160 RQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKS-------NLDLTLVS 232 (1047)
Q Consensus 160 Re~L~eweKkLqe~eeRL~e~qrlLNqREe~~~e~~~~l~~kEkeLEeak~kie~~~~~Lk~ke~-------dl~~rl~~ 232 (1047)
++.+...-|.=...++++.+.+.-|...++.++.-.+...+++-.|++....++.+.....+-+. ++...-..
T Consensus 977 ~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~ 1056 (1930)
T KOG0161|consen 977 DENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQES 1056 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 65555555444456677777777777778888877777777777777777777766666555442 22222222
Q ss_pred HhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhh--hHHHHHHHHH-----------------hHHHhhhhhhhHHHHHHH
Q 001600 233 LLKREEAVIEREASLQKKEQKLLVSQETLASKE--SNEIQKIIAN-----------------HESALRVKQSEFEAELAI 293 (1047)
Q Consensus 233 l~~rEee~~~~~~~Le~KEkeLl~leEKL~aRE--~~EIQKLlde-----------------h~a~L~~KK~EFElElE~ 293 (1047)
+..-......+...|.++|-+|..++.++..-. ....||.+.+ ..+.++..++++..+++.
T Consensus 1057 ~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~ 1136 (1930)
T KOG0161|consen 1057 IEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEE 1136 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222334455666777777888777777765433 2223333322 234555666666666666
Q ss_pred HhhhHHHHHHHHHHHH---HhhhhhhhhhHHHHHhhhhhHHHHHHHHH----HhhhhHHHHhhhhHHHHhhhHHHHHHhH
Q 001600 294 KYKLAEDEIEKKRRAW---ELRDLDLGQREESLLEREHDLEVQSRALV----DKEKDLVERSHLLEEKENKLIAFEKEAD 366 (1047)
Q Consensus 294 krKs~eeEle~K~~~~---E~rEvel~h~Eekl~kREqaLe~k~~~lk----EKEkdl~~Ksk~LKEkEksLkaeEK~le 366 (1047)
...-+++-......-. .++|.++..+-..+.+.....+.++..+. +.=.++.+-+..++.....+......++
T Consensus 1137 l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq 1216 (1930)
T KOG0161|consen 1137 LKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQ 1216 (1930)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665533333322 34555555554444444444444443333 2233455555556655556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHH
Q 001600 367 LKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQ 446 (1047)
Q Consensus 367 ~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk 446 (1047)
.+-..|..+-..+...+.++++..-.++ .++.+.+.++.-+..-++++..-.++|..|+..+=.|.++....+..+-
T Consensus 1217 ~e~~~l~~ev~~~~~~k~~~e~~~k~~E---~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~ 1293 (1930)
T KOG0161|consen 1217 REIADLAAELEQLSSEKKDLEKKDKKLE---AQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALS 1293 (1930)
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHH
Confidence 6666666666666677777777775555 4556666677777777777888888888888888888888888888888
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhh
Q 001600 447 LEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSE 526 (1047)
Q Consensus 447 ~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelEsL~~ekEsF~~kMehErs~ 526 (1047)
..+..|+.+-+.+ +.+| ...+..+-++..-+. ++..+.+.++.+|.-+.+....-.-. ..+-.-+=+.
T Consensus 1294 r~~~~~~~qle~~---k~ql----e~e~r~k~~l~~~l~----~l~~e~~~l~e~leee~e~~~~l~r~-lsk~~~e~~~ 1361 (1930)
T KOG0161|consen 1294 RDKQALESQLEEL---KRQL----EEETREKSALENALR----QLEHELDLLREQLEEEQEAKNELERK-LSKANAELAQ 1361 (1930)
T ss_pred HHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 8888888877766 3333 334444444444333 45556777777777766665421100 1112223344
Q ss_pred HHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhH----------------------------------HHHHHHHHH
Q 001600 527 WFTKIQQERADFLLGIEMQKRDLENCIEKRREELESS----------------------------------FREREKAFE 572 (1047)
Q Consensus 527 ~~eKiq~Erad~l~d~EmqkreLE~~i~~R~EEiE~~----------------------------------L~EREk~FE 572 (1047)
|-.|++....+-+-+++.-|+.|...++.-++.+|-. |..+-+.|+
T Consensus 1362 ~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~ 1441 (1930)
T KOG0161|consen 1362 WKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFE 1441 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555556655665555555544444322 222222332
Q ss_pred H---HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhH
Q 001600 573 E---EKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADR 649 (1047)
Q Consensus 573 e---ek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ER 649 (1047)
. +-.+-...+....+.+.++..+...+..++...=.+.....+.+.++-..|...|.+|..+-.-+-.....+...+
T Consensus 1442 k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~ 1521 (1930)
T KOG0161|consen 1442 KLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEK 1521 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1122233444555555556555555666655555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHH
Q 001600 650 EEIQAESER 658 (1047)
Q Consensus 650 e~f~~~vE~ 658 (1047)
..+-..++.
T Consensus 1522 r~le~e~~e 1530 (1930)
T KOG0161|consen 1522 RRLEQEKEE 1530 (1930)
T ss_pred HHHHHHHHH
Confidence 544444333
No 3
>PRK02224 chromosome segregation protein; Provisional
Probab=99.12 E-value=9.9e-05 Score=88.90 Aligned_cols=92 Identities=14% Similarity=0.208 Sum_probs=63.8
Q ss_pred HHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchh
Q 001600 43 ARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHR 122 (1047)
Q Consensus 43 aeKREEnLkKALgvEKqCVadLEKAL~Emr~E~AeiK~taesKLaEA~aLv~~~eeKs~EaE~KL~aAea~~AEa~Rk~s 122 (1047)
...|.+=+.+.+|+.. +-.+...+.+.+..+..++-...+++......+.. .....+...|..+...++++....+
T Consensus 148 p~~R~~ii~~l~~l~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~l~~~l~~~~~~l~el~~~i~ 223 (880)
T PRK02224 148 PSDRQDMIDDLLQLGK--LEEYRERASDARLGVERVLSDQRGSLDQLKAQIEE--KEEKDLHERLNGLESELAELDEEIE 223 (880)
T ss_pred HHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999999833 35567778888888888888888888888777766 2245566667777777766666666
Q ss_pred HHhhhhHHHhhhhhHH
Q 001600 123 SAERKLQEVVAREDDL 138 (1047)
Q Consensus 123 ~aeRKL~eVEaRE~~L 138 (1047)
.+...+..+...-..|
T Consensus 224 ~~~~~~~~l~~~l~~l 239 (880)
T PRK02224 224 RYEEQREQARETRDEA 239 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6555555554444444
No 4
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.91 E-value=0.00094 Score=84.87 Aligned_cols=75 Identities=8% Similarity=0.034 Sum_probs=52.5
Q ss_pred HhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhh
Q 001600 62 ASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARED 136 (1047)
Q Consensus 62 adLEKAL~Emr~E~AeiK~taesKLaEA~aLv~~~eeKs~EaE~KL~aAea~~AEa~Rk~s~aeRKL~eVEaRE~ 136 (1047)
..|.+.++....+....+-..+..+..+..-+..+..+....+..+..+........+....+.++|..+..-++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~ 471 (1311)
T TIGR00606 397 TLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSD 471 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChH
Confidence 446677777777777777777777777777777777777777777777766666666666666666665544444
No 5
>PRK03918 chromosome segregation protein; Provisional
Probab=98.81 E-value=0.0012 Score=79.36 Aligned_cols=44 Identities=7% Similarity=0.161 Sum_probs=24.8
Q ss_pred hhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001600 145 FKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNERE 188 (1047)
Q Consensus 145 f~aE~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNqRE 188 (1047)
...+....+..+..-...+.+|+..+.+.+.++...+.++.+.+
T Consensus 243 l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~ 286 (880)
T PRK03918 243 LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK 286 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555566666666666666666665554433
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.69 E-value=0.0029 Score=76.86 Aligned_cols=9 Identities=0% Similarity=-0.005 Sum_probs=4.2
Q ss_pred HHHHHHHHh
Q 001600 743 IKRFADLVF 751 (1047)
Q Consensus 743 lrKCTskIF 751 (1047)
|.+++..+|
T Consensus 1019 i~~~~~~~f 1027 (1179)
T TIGR02168 1019 LEEAIEEID 1027 (1179)
T ss_pred HHHHHHHHH
Confidence 444444444
No 7
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.68 E-value=0.0046 Score=78.86 Aligned_cols=84 Identities=13% Similarity=0.162 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 001600 422 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ 501 (1047)
Q Consensus 422 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~ 501 (1047)
..|+.+|+.+..+...+-.+..+++.+.+-...+|+.+-..+..+......-..+-..--.-+...-+.|..--..+++|
T Consensus 884 ~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y 963 (1311)
T TIGR00606 884 QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENK 963 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444433333222221111111112222334444445555555
Q ss_pred HHhh
Q 001600 502 HKRD 505 (1047)
Q Consensus 502 ~kre 505 (1047)
+...
T Consensus 964 ~~~~ 967 (1311)
T TIGR00606 964 IQDG 967 (1311)
T ss_pred HHcC
Confidence 5544
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.68 E-value=0.0031 Score=76.58 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=14.4
Q ss_pred hhhhhhhHHHHHHHhhHHHHHHHHHHHHH
Q 001600 612 MDRQRRDREWAELNNSIEELMVQRQKLEE 640 (1047)
Q Consensus 612 ~~ke~le~e~aEm~kdIeeL~~ls~KLk~ 640 (1047)
..-..+..+..++...++.|...-.++.+
T Consensus 993 er~~~l~~q~~dL~~~~~~L~~~i~~i~~ 1021 (1179)
T TIGR02168 993 EEYEELKERYDFLTAQKEDLTEAKETLEE 1021 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555554444
No 9
>PRK03918 chromosome segregation protein; Provisional
Probab=98.52 E-value=0.0075 Score=72.85 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHH
Q 001600 424 LKEELDVVRAQKLELMVETDKLQ 446 (1047)
Q Consensus 424 LKeEId~~R~Qke~LlkEae~Lk 446 (1047)
+.++|..++.+...|.++...|.
T Consensus 457 ~~~ei~~l~~~~~~l~~~~~~l~ 479 (880)
T PRK03918 457 YTAELKRIEKELKEIEEKERKLR 479 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 10
>PRK01156 chromosome segregation protein; Provisional
Probab=98.39 E-value=0.016 Score=70.72 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001600 588 KAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQL 644 (1047)
Q Consensus 588 ~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~ 644 (1047)
....++..+..+..++..+...+..+...+.....++..+|+.|..--.++.++...
T Consensus 671 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~ 727 (895)
T PRK01156 671 EITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLES 727 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 445566666667777777777777777777777777777666655444444444433
No 11
>PRK01156 chromosome segregation protein; Provisional
Probab=98.30 E-value=0.025 Score=69.14 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=33.2
Q ss_pred HHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 001600 608 MEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKL 662 (1047)
Q Consensus 608 ~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~f~~~vE~lK~c 662 (1047)
..+......+..+...++.+|..|...-..|+++-..+..+...+..+++.++.+
T Consensus 677 ~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~~~ 731 (895)
T PRK01156 677 NDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKI 731 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666666677777777666666666555555555666665555554
No 12
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.29 E-value=0.051 Score=71.91 Aligned_cols=41 Identities=24% Similarity=0.205 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 001600 415 GELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 455 (1047)
Q Consensus 415 ~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E 455 (1047)
+.+++....+..+|+.++.|.+.-...--.|-..-.+++.|
T Consensus 1290 ~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e 1330 (1930)
T KOG0161|consen 1290 SALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHE 1330 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444444433333333333333
No 13
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.27 E-value=0.041 Score=70.14 Aligned_cols=207 Identities=14% Similarity=0.275 Sum_probs=150.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 001600 413 EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLR 492 (1047)
Q Consensus 413 ER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~erLK 492 (1047)
++.+|......|.+++..+..+...+.+..+.+..+.......-+.+...-+..+-+++........+..-......++.
T Consensus 594 ~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 673 (1201)
T PF12128_consen 594 DVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE 673 (1201)
T ss_pred CCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999988888888888888888888887777777777666666677777777
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 001600 493 QERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFE 572 (1047)
Q Consensus 493 ~Ek~~~r~~~krelEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~i~~R~EEiE~~L~EREk~FE 572 (1047)
..+..-+..+...+..+..+-..|- .++..|....+........++--+..+++..+....+.+...+..+...|.
T Consensus 674 ~~~~~~~~~~~~~l~~l~~~l~~~~----~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~ 749 (1201)
T PF12128_consen 674 EAKEERKEQIEEQLNELEEELKQLK----QELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAK 749 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777788877777777665553 455566666666666666666666666666666666666666665555554
Q ss_pred H-------HHHHHhhh--hhh-HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHH
Q 001600 573 E-------EKMREFQQ--ISS-LKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAE 623 (1047)
Q Consensus 573 e-------ek~~EL~~--IN~-lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aE 623 (1047)
+ ....+|.. |+- .-..++.+++++.-++.+++.-|..|..=+.=+...|..
T Consensus 750 ~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~ 810 (1201)
T PF12128_consen 750 EQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDK 810 (1201)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4 33344432 222 445567888889999999999888887766666666654
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.03 E-value=0.11 Score=66.03 Aligned_cols=75 Identities=19% Similarity=0.221 Sum_probs=38.1
Q ss_pred eehhhhhhhHHHHHHHHHHHHH---HHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhh
Q 001600 6 LEKKELASKYEQIKASAEAAEL---LQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKV 80 (1047)
Q Consensus 6 iEkKEwtSKyEeLkqa~~eae~---~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~Emr~E~AeiK~ 80 (1047)
.+-..+..+++++...+...+. .+......+.-.+...+.+-+.++..+..--+++..+...+.++-.+.+.++-
T Consensus 232 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~ 309 (1163)
T COG1196 232 AKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRE 309 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555554442 22333333444445555555555555555555666555556666555555553
No 15
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.027 Score=68.50 Aligned_cols=217 Identities=24% Similarity=0.338 Sum_probs=130.3
Q ss_pred hhhhhhHH---HHHHHHhhhHHHHHHHHHHHHHhhhhh---hhhhH--HHHHhhhhhHHHHHHHHHHhhhhHH-HHhhhh
Q 001600 281 RVKQSEFE---AELAIKYKLAEDEIEKKRRAWELRDLD---LGQRE--ESLLEREHDLEVQSRALVDKEKDLV-ERSHLL 351 (1047)
Q Consensus 281 ~~KK~EFE---lElE~krKs~eeEle~K~~~~E~rEve---l~h~E--ekl~kREqaLe~k~~~lkEKEkdl~-~Ksk~L 351 (1047)
|.|+-.|+ +|||.+|+-+++.-...+..++++|.+ -+.+| ++=.|++-+|++++++--+.|..-+ .+-+.+
T Consensus 316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkei 395 (1118)
T KOG1029|consen 316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEI 395 (1118)
T ss_pred hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665 788888888888877777777666543 23333 3334555667777777666654332 223333
Q ss_pred HHHHhhhHHHHHH--hHHH-------HHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHH
Q 001600 352 EEKENKLIAFEKE--ADLK-------KSLLQKEKEEVNIIK---SDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSV 419 (1047)
Q Consensus 352 KEkEksLkaeEK~--le~e-------k~~L~~eKEel~~lK---~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lr 419 (1047)
..+|-.-+-.||. ++-+ .+|...+.+.|-.++ ..++--+..|..+++++..--....+-.
T Consensus 396 e~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~-------- 467 (1118)
T KOG1029|consen 396 ERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDI-------- 467 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheecc--------
Confidence 3333322222221 1111 122223333333332 2344444455555555554444333222
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh-------------hh
Q 001600 420 LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSL-------------KD 486 (1047)
Q Consensus 420 LQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~-------------~~ 486 (1047)
..-|++|+.++-|.+..+.|.+.|+++.. |++.-+.+++-||..|..-+ ++
T Consensus 468 --tt~kt~ie~~~~q~e~~isei~qlqarik--------------E~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s 531 (1118)
T KOG1029|consen 468 --TTQKTEIEEVTKQRELMISEIDQLQARIK--------------ELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKS 531 (1118)
T ss_pred --chHHHHHHHhhhHHHHHHHHHHHHHHHHH--------------HHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHH
Confidence 35689999999999999999999998754 34444455555555554322 56
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 001600 487 ERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV 521 (1047)
Q Consensus 487 E~erLK~Ek~~~r~~~krelEsL~~ekEsF~~kMe 521 (1047)
+.+++...|+.++.+++-.++.|+-+.+|=.+.|.
T Consensus 532 ~L~aa~~~ke~irq~ikdqldelskE~esk~~eid 566 (1118)
T KOG1029|consen 532 ELEAARRKKELIRQAIKDQLDELSKETESKLNEID 566 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77788888999999999999999998888777776
No 16
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.80 E-value=0.21 Score=61.68 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001600 629 EELMVQRQKLEEQRQLLHADREEIQAESERLK 660 (1047)
Q Consensus 629 eeL~~ls~KLk~QRE~~~~ERe~f~~~vE~lK 660 (1047)
+++...-..|.+|++.+...+..|...|+.++
T Consensus 982 ~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~ 1013 (1164)
T TIGR02169 982 EEVLKRLDELKEKRAKLEEERKAILERIEEYE 1013 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445566666666666666666666665
No 17
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.78 E-value=0.36 Score=63.79 Aligned_cols=415 Identities=17% Similarity=0.220 Sum_probs=219.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHH
Q 001600 13 SKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCM 92 (1047)
Q Consensus 13 SKyEeLkqa~~eae~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~Emr~E~AeiK~taesKLaEA~aL 92 (1047)
|+..++++.+-..+.+|.+....|=-...+++.+-+++.+-+.-=..=+..|++-.-.++.+++-.....+.+++.+..-
T Consensus 926 s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e 1005 (1822)
T KOG4674|consen 926 SQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSRE 1005 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHH
Confidence 56677888889999999999999988888888888887765544444456677777788888877778888888888888
Q ss_pred HHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHH---HhchHHHHHH
Q 001600 93 VENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRE---RQSLSDRKKI 169 (1047)
Q Consensus 93 v~~~eeKs~EaE~KL~aAea~~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~aE~ea~E~~~~~q---Re~L~eweKk 169 (1047)
+.++..-...+.... -.+++..+.+-. +|..++.+......-|+.++..- .+.|.....-
T Consensus 1006 ~~sl~ne~~~~~~~~-------s~~~~~~~~~k~----------dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee 1068 (1822)
T KOG4674|consen 1006 ISSLQNELKSLLKAA-------SQANEQIEDLQN----------DLKTETEQLRKAQSKYESELVQHADLTQKLIKLREE 1068 (1822)
T ss_pred hHHHHHHHHHHHHHH-------HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887776555444333 233333333333 23333444444444444443221 2334444444
Q ss_pred HHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHH----HhhcHH---HHHHHHhhhhhhhhHhHH--HHhhhHHHH
Q 001600 170 LQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEA----SRANVE---EKFKALNEEKSNLDLTLV--SLLKREEAV 240 (1047)
Q Consensus 170 Lqe~eeRL~e~qrlLNqREe~~~e~~~~l~~kEkeLEe----ak~kie---~~~~~Lk~ke~dl~~rl~--~l~~rEee~ 240 (1047)
+......+.+.....-++..-.-+..+-....++-|+. ..+.|. ..+..|...=+.+....+ .++.-..-.
T Consensus 1069 ~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~ 1148 (1822)
T KOG4674|consen 1069 FAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGL 1148 (1822)
T ss_pred HHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccch
Confidence 44445555555444444443333333333333222222 222221 112222222222222211 111111110
Q ss_pred HHHHHH--HHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHhhhhhhhHHHHHHHHhhhH---------HHHHHHHHHHH
Q 001600 241 IEREAS--LQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLA---------EDEIEKKRRAW 309 (1047)
Q Consensus 241 ~~~~~~--Le~KEkeLl~leEKL~aRE~~EIQKLldeh~a~L~~KK~EFElElE~krKs~---------eeEle~K~~~~ 309 (1047)
..+... .--+|+++..-+-.+.-+|...... +-+.+.....++...|...|.++ +.+|-.++..|
T Consensus 1149 sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~q----q~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~v 1224 (1822)
T KOG4674|consen 1149 SDLQNIVSFLRKEKEIAETKLDTLKRENARLKQ----QVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEV 1224 (1822)
T ss_pred HHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHH
Confidence 001100 1124444444444444444433222 22233334444444455555555 34455555555
Q ss_pred H-hhhh------hhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHH-------H---
Q 001600 310 E-LRDL------DLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSL-------L--- 372 (1047)
Q Consensus 310 E-~rEv------el~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~-------L--- 372 (1047)
. .+|- +..+-.+++ +.|..+.+++.-.=.-|..-++.|+..=....|+=+.++.+... |
T Consensus 1225 Nll~EsN~~LRee~~~~~~k~----qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1225 NLLRESNKVLREENEANLEKI----QELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 2222 223333333 44444444444333333444444444333333333333333221 2
Q ss_pred --HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHH
Q 001600 373 --QKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKA 450 (1047)
Q Consensus 373 --~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKe 450 (1047)
..|+.++.+++.+|......+++....|.+-... +.++|-++|...|..-..+..+.++...|+.-+-
T Consensus 1301 ~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~----------~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~ 1370 (1822)
T KOG4674|consen 1301 YKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKE----------LNRLQEKIKKQLDELNNEKANLTKELEQLEDLKT 1370 (1822)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2347778888888888877777666666555443 4455578888888888888889999999999999
Q ss_pred HHHHHHhhhHHH
Q 001600 451 KFEAEWEMIDEK 462 (1047)
Q Consensus 451 kFE~EWE~LDEK 462 (1047)
+.+.-|.-.-++
T Consensus 1371 rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1371 RLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHH
Confidence 999988876665
No 18
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.64 E-value=0.36 Score=59.96 Aligned_cols=15 Identities=13% Similarity=0.009 Sum_probs=10.7
Q ss_pred hHHHHHHHhhHHHHH
Q 001600 618 DREWAELNNSIEELM 632 (1047)
Q Consensus 618 e~e~aEm~kdIeeL~ 632 (1047)
=.-|..++.-+....
T Consensus 742 ~~~~~~l~~~~~~~~ 756 (908)
T COG0419 742 LELLEELREKLGKAG 756 (908)
T ss_pred HHHHHHHHHHHhHHH
Confidence 355777888777775
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.56 E-value=0.55 Score=60.04 Aligned_cols=169 Identities=23% Similarity=0.317 Sum_probs=98.8
Q ss_pred HHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhc
Q 001600 40 IAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANR 119 (1047)
Q Consensus 40 LsEaeKREEnLkKALgvEKqCVadLEKAL~Emr~E~AeiK~taesKLaEA~aLv~~~eeKs~EaE~KL~aAea~~AEa~R 119 (1047)
+.+.+++=+.|++---.- +|-.+|...++.++..+.-.+ +-.++.-...+.+....+++-+.+....+.++..
T Consensus 195 ~~el~~~l~~L~~q~~~a-~~y~~l~~e~~~~~~~~~~~~------~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 267 (1163)
T COG1196 195 LEELEKQLEKLERQAEKA-ERYQELKAELRELELALLLAK------LKELRKELEELEEELSRLEEELEELQEELEEAEK 267 (1163)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455545544433322 234456667777766665554 2233333444444455555555555556666666
Q ss_pred chhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhh---HH
Q 001600 120 YHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSK---LQ 196 (1047)
Q Consensus 120 k~s~aeRKL~eVEaRE~~LrRerlSf~aE~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNqREe~~~e~---~~ 196 (1047)
.-..+..+++++.+.-..++.+-+.+......++.++...++.+..-...+.+.+.++...+.-+-.+...+... ..
T Consensus 268 ~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (1163)
T COG1196 268 EIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLE 347 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 666677777777777777766666666677778888887777777777777777777666666666666666655 33
Q ss_pred HHhHhHHHHHHHhhcHHHH
Q 001600 197 ELSRKEKELEASRANVEEK 215 (1047)
Q Consensus 197 ~l~~kEkeLEeak~kie~~ 215 (1047)
.+......+.......+..
T Consensus 348 e~~~~~~~~~~~~~e~~~~ 366 (1163)
T COG1196 348 ELEQLLAELEEAKEELEEK 366 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444433333333
No 20
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.49 E-value=0.55 Score=58.19 Aligned_cols=323 Identities=19% Similarity=0.273 Sum_probs=191.8
Q ss_pred hHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh-----hhh---HHHHHHHHHhHHHhhhhhhhH-------HHHHHH
Q 001600 229 TLVSLLKREEAVIEREASLQKKEQKLLVSQETLAS-----KES---NEIQKIIANHESALRVKQSEF-------EAELAI 293 (1047)
Q Consensus 229 rl~~l~~rEee~~~~~~~Le~KEkeLl~leEKL~a-----RE~---~EIQKLldeh~a~L~~KK~EF-------ElElE~ 293 (1047)
....+.-.|-.+..++..|+.+|++...+-+.|-- ++. ..+|++|+.- +++...| |.|+..
T Consensus 181 ~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~K----d~ki~~lEr~l~~le~Ei~~ 256 (775)
T PF10174_consen 181 ALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEK----DTKIASLERMLRDLEDEIYR 256 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 33345555666777788888899888766443322 222 2468887764 4445555 444444
Q ss_pred HhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHH
Q 001600 294 KYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQ 373 (1047)
Q Consensus 294 krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~ 373 (1047)
.+..++---.. +.-..++++.........|-. ++.-.=.|..+.-.+.+...-|.-....-.....-|+.=+..|-
T Consensus 257 L~~~~~~~~~~--r~~~~k~le~~~s~~~~mK~k--~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~ 332 (775)
T PF10174_consen 257 LRSRGELSEAD--RDRLDKQLEVYKSHSLAMKSK--MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLR 332 (775)
T ss_pred HHhcccccccc--hHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 43333211110 112222333333333333311 33333445566666666666666666666666777777788888
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q 001600 374 KEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFE 453 (1047)
Q Consensus 374 ~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE 453 (1047)
+--.....|..|++-++..++..-.++...+..+..+++|.+-+..==.+|+..+|..=..-..|.+.+|.|...-..=+
T Consensus 333 ~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd 412 (775)
T PF10174_consen 333 AKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKD 412 (775)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999887765544455666666666666666666555543322111
Q ss_pred HHHhhhHHHHHHHH------------HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 001600 454 AEWEMIDEKREELR------------KEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV 521 (1047)
Q Consensus 454 ~EWE~LDEKR~eL~------------KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelEsL~~ekEsF~~kMe 521 (1047)
..|++-++.|. -.++.-..+++.+..-+...+++.-.++..--+.|++++..++..-++|-..+
T Consensus 413 ---~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eL- 488 (775)
T PF10174_consen 413 ---RQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKEL- 488 (775)
T ss_pred ---HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-
Confidence 11222222222 33333334444444444444444444444444667777777777777777655
Q ss_pred hhhhhHHHHHHHHHHHhhhhhHhhhhh---hHHHHHHHHHHHHhH
Q 001600 522 HEHSEWFTKIQQERADFLLGIEMQKRD---LENCIEKRREELESS 563 (1047)
Q Consensus 522 hErs~~~eKiq~Erad~l~d~Emqkre---LE~~i~~R~EEiE~~ 563 (1047)
||+..-+.-++.+-+.+.-+.+-+..+ |++.+++.++++++-
T Consensus 489 sEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl 533 (775)
T PF10174_consen 489 SEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKL 533 (775)
T ss_pred HHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHH
Confidence 677777777777777776666555544 446666666666543
No 21
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.43 E-value=0.5 Score=56.49 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=39.5
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 001600 618 DREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKK 661 (1047)
Q Consensus 618 e~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~f~~~vE~lK~ 661 (1047)
.=+.+|-++.|.+|+..=+-+++-.|+|..++-.++..|++|..
T Consensus 409 ~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~ 452 (546)
T PF07888_consen 409 RVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQ 452 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34889999999999999999999999999999999999998863
No 22
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.29 E-value=0.93 Score=56.49 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=29.4
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001600 408 EAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERV 473 (1047)
Q Consensus 408 kitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I 473 (1047)
....++...+..+..+|+...+.++.-. ....+.++++..-..+..-|..|...-..++......
T Consensus 555 ~~l~~e~~~le~~~~~l~~~~~~~~~~~-~~~~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~ 619 (908)
T COG0419 555 QQLKEELRQLEDRLQELKELLEELRLLR-TRKEELEELRERLKELKKKLKELEERLSQLEELLQSL 619 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333344444455544444444333 2224444444444444555555555555555444444
No 23
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.28 E-value=5.9e-05 Score=92.17 Aligned_cols=302 Identities=23% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHhhhhhhhHHHHHHHHhhhHHHHHHHHHHH---HHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHH
Q 001600 277 ESALRVKQSEFEAELAIKYKLAEDEIEKKRRA---WELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEE 353 (1047)
Q Consensus 277 ~a~L~~KK~EFElElE~krKs~eeEle~K~~~---~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKE 353 (1047)
+..|..+.+..+.+++..+..++++-++|... +..-..+|..+-.+ -+.......+.|.+--+.|..++..+.+
T Consensus 259 k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K---~e~e~~~~~EelEeaKKkL~~~L~el~e 335 (859)
T PF01576_consen 259 KQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKK---YEEEAEQRTEELEEAKKKLERKLQELQE 335 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888888776542 22333333333322 2333444455566666777777777777
Q ss_pred HHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 001600 354 KENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLS---SLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDV 430 (1047)
Q Consensus 354 kEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra---~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~ 430 (1047)
.-..+.+.--.|+.-+..|+.+-+.+.. +|++..+ .++...++++.....++.- -..+..+.|.
T Consensus 336 ~le~~~~~~~~LeK~k~rL~~EleDl~~---eLe~~~~~~~~LeKKqr~fDk~l~e~k~~----------~~~~~~e~d~ 402 (859)
T PF01576_consen 336 QLEEANAKVSSLEKTKKRLQGELEDLTS---ELEKAQAAAAELEKKQRKFDKQLAEWKAK----------VEELQAERDA 402 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHH----------HHHHHHHHHH
Confidence 7777777777777778888877666554 4554443 5566666666544433322 1356667777
Q ss_pred HHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhh
Q 001600 431 VRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLN 510 (1047)
Q Consensus 431 ~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelEsL~ 510 (1047)
.-.....+..++-.|+.+.......|+.+.-....|+.|+.++..+.-...+-++ +-++.+.....-.+.++..++-+.
T Consensus 403 ~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~-eLek~kr~LE~e~~El~~~leE~E 481 (859)
T PF01576_consen 403 AQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVH-ELEKAKRRLEQEKEELQEQLEEAE 481 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888888888888888788888877777888887777666444433332 222222222221122222222221
Q ss_pred hhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 001600 511 REREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAE 590 (1047)
Q Consensus 511 ~ekEsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~i~~R~EEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~ 590 (1047)
+-+...|-.+.-|+..|+.-+-++++.|.+|+..|+..|..=...|-+|..-+.
T Consensus 482 --------------------------~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE 535 (859)
T PF01576_consen 482 --------------------------DALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELE 535 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHH
Confidence 122244555667888888889999999999999999877654444444333332
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHH
Q 001600 591 KELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELM 632 (1047)
Q Consensus 591 kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~ 632 (1047)
.| -+.|.++.-.|++++.+..+|.-.++..+
T Consensus 536 ~E-----------~k~r~~~~r~kkKLE~~l~eLe~~ld~~n 566 (859)
T PF01576_consen 536 EE-----------RKERAEALREKKKLESDLNELEIQLDHAN 566 (859)
T ss_dssp ------------------------------------------
T ss_pred HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 23344555555555555555544444443
No 24
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.80 E-value=1.9 Score=51.78 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 001600 422 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ 501 (1047)
Q Consensus 422 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~ 501 (1047)
+.+-+|...+.+..+..-.++.+|+.++.+-+. .|+|+|.+=++=...|+.++..= +++-+|..|.-.|..++=.-
T Consensus 353 ~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~---~lqEer~E~qkL~~ql~ke~D~n-~vqlsE~~rel~Elks~lrv 428 (546)
T PF07888_consen 353 SQWAQEKQALQHSAEADKDEIEKLSRELQMLEE---HLQEERMERQKLEKQLGKEKDCN-RVQLSENRRELQELKSSLRV 428 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHH
Confidence 445555555554444444567778888877776 68899888777666776665443 57888888888776665555
Q ss_pred HHhhhhhhhhhHHHHHHhhh
Q 001600 502 HKRDVDSLNREREEFMNKMV 521 (1047)
Q Consensus 502 ~krelEsL~~ekEsF~~kMe 521 (1047)
.+.+-|.|..++-+.|.-|.
T Consensus 429 ~qkEKEql~~EkQeL~~yi~ 448 (546)
T PF07888_consen 429 AQKEKEQLQEEKQELLEYIE 448 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554444443
No 25
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.73 E-value=3.1 Score=53.16 Aligned_cols=69 Identities=25% Similarity=0.266 Sum_probs=40.6
Q ss_pred HHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhHHh
Q 001600 599 EIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKI 667 (1047)
Q Consensus 599 E~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~f~~~vE~lK~ckncg~ 667 (1047)
+...++.+-.+|...-+..+..-+.+-+-=+++..+....+.-++.|-+.|..|--.+++|-.+++=.-
T Consensus 732 ~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~ 800 (1074)
T KOG0250|consen 732 DISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELK 800 (1074)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344555555666655555555544444444445555555566667777778777777776666554433
No 26
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.70 E-value=0.79 Score=48.83 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhh
Q 001600 168 KILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLD 227 (1047)
Q Consensus 168 KkLqe~eeRL~e~qrlLNqREe~~~e~~~~l~~kEkeLEeak~kie~~~~~Lk~ke~dl~ 227 (1047)
-++.+.+.+|-+....+..-+.+.-+..+.|...+.+|+.+...++..-..+.+-+..|.
T Consensus 92 eri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~ 151 (237)
T PF00261_consen 92 ERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELK 151 (237)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Confidence 344444444444555555555555555555555555555555555544444444444333
No 27
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.65 E-value=1.2 Score=47.41 Aligned_cols=225 Identities=21% Similarity=0.260 Sum_probs=125.6
Q ss_pred hhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhh
Q 001600 107 LHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNE 186 (1047)
Q Consensus 107 L~aAea~~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~aE~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNq 186 (1047)
+-.|......+......++.++..+++.-..|.|..-.+..+.+ .--+.|..-..+|.+.+.++-+..+.+..
T Consensus 10 ld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le-------~~eerL~~~~~kL~~~e~~~de~er~~k~ 82 (237)
T PF00261_consen 10 LDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELE-------RAEERLEEATEKLEEAEKRADESERARKV 82 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-------HHHCCCCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444445555555555566555555444433 33355666677777777777777777777
Q ss_pred hhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhh
Q 001600 187 REDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKES 266 (1047)
Q Consensus 187 REe~~~e~~~~l~~kEkeLEeak~kie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkeLl~leEKL~aRE~ 266 (1047)
=+.+....+..+..++..|.+++...+..-..+.+-...|...-..|.--|.-++..++.+...|.+|..+-..|-+=|-
T Consensus 83 lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~ 162 (237)
T PF00261_consen 83 LENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEA 162 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhh
Confidence 77777777888888888888887777776666655555555555555555555555555555555555555555543332
Q ss_pred HHHHHHHHHhHHHhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHH
Q 001600 267 NEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVE 346 (1047)
Q Consensus 267 ~EIQKLldeh~a~L~~KK~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~ 346 (1047)
.+.+ . .+=+-.++.+-+.|..-|..=..-++--|..+...|..+..-+-.|..--.+.+....+|+.
T Consensus 163 ~~~~---------~----~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 163 SEEK---------A----SEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHH---------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhh---------h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 1 11112222233334444444344444445555666666666666666666666666666665
Q ss_pred Hhhhh
Q 001600 347 RSHLL 351 (1047)
Q Consensus 347 Ksk~L 351 (1047)
-+..|
T Consensus 230 ~l~el 234 (237)
T PF00261_consen 230 TLNEL 234 (237)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 55443
No 28
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.24 E-value=0.0011 Score=81.32 Aligned_cols=522 Identities=21% Similarity=0.272 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhh---------------------HHHHH
Q 001600 83 DSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARED---------------------DLSRR 141 (1047)
Q Consensus 83 esKLaEA~aLv~~~eeKs~EaE~KL~aAea~~AEa~Rk~s~aeRKL~eVEaRE~---------------------~LrRe 141 (1047)
+.-+.+..+-++++.+--..+|.+....++.+++++.+..++++-+.++.+.-. .|.|.
T Consensus 158 ~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~ 237 (859)
T PF01576_consen 158 EAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQRE 237 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666666666666666665555555555544444 44444
Q ss_pred HhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHh-
Q 001600 142 IASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALN- 220 (1047)
Q Consensus 142 rlSf~aE~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNqREe~~~e~~~~l~~kEkeLEeak~kie~~~~~Lk- 220 (1047)
+.++.+..+.....+...=..-......|+..+..+...+..+..=.+...+-.+.|.....+|..|+++++.......
T Consensus 238 k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~E 317 (859)
T PF01576_consen 238 KSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTE 317 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHH
Confidence 4444444443333332221122222333444444443333333333344555566777888888888888888766633
Q ss_pred ---hhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHh---HHHhhhhhhhHHHHHHHH
Q 001600 221 ---EEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANH---ESALRVKQSEFEAELAIK 294 (1047)
Q Consensus 221 ---~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh---~a~L~~KK~EFElElE~k 294 (1047)
+-+-.+..+|..+...-+++......|++. -.-|+.-+ ....--|+.+ .+.|+.|.+-|+..+..-
T Consensus 318 elEeaKKkL~~~L~el~e~le~~~~~~~~LeK~---k~rL~~El-----eDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~ 389 (859)
T PF01576_consen 318 ELEEAKKKLERKLQELQEQLEEANAKVSSLEKT---KKRLQGEL-----EDLTSELEKAQAAAAELEKKQRKFDKQLAEW 389 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333344444444444433333333333321 11111111 1111222222 346788888888888777
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhh-------hhHHHHhhhhHHHHhhhHHHHHHhHH
Q 001600 295 YKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKE-------KDLVERSHLLEEKENKLIAFEKEADL 367 (1047)
Q Consensus 295 rKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKE-------kdl~~Ksk~LKEkEksLkaeEK~le~ 367 (1047)
+.-++... ..++.-..+....+..+.+=.++|+.....+...+ .++..=...+.+-.+++.. |+.
T Consensus 390 k~~~~~~~----~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~e----Lek 461 (859)
T PF01576_consen 390 KAKVEELQ----AERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHE----LEK 461 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH----HHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHH----HHH
Confidence 66655332 22233334444444445444444444433333322 2222222233333333222 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh------------hhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 001600 368 KKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE------------AMKSEAGELSVLEIKLKEELDVVRAQK 435 (1047)
Q Consensus 368 ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~Lk------------itkeER~E~lrLQseLKeEId~~R~Qk 435 (1047)
.+..|..++.++...=.+++-.+-..+...+.+.-+-+.++ -+++-|--|.+-=-.|..++|.=|..+
T Consensus 462 ~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r 541 (859)
T PF01576_consen 462 AKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKER 541 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHH
Confidence 23344444433333333333222222222222221111111 111112212211122222223333333
Q ss_pred HHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH----------HHhh
Q 001600 436 LELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ----------HKRD 505 (1047)
Q Consensus 436 e~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~----------~kre 505 (1047)
..++..--+|..+..-.+.-|+...-=..++.|.++.+..+=.-+...+. .-....++++.+ .+.+
T Consensus 542 ~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~le----e~~~~~~~~~~~~~~~e~r~~~l~~e 617 (859)
T PF01576_consen 542 AEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELE----EAQRAREELREQLAVSERRLRALQAE 617 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444554444444455544444333333222222 111222223222 2233
Q ss_pred hhhhhhhHHHHHH---hhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 001600 506 VDSLNREREEFMN---KMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQI 582 (1047)
Q Consensus 506 lEsL~~ekEsF~~---kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~i~~R~EEiE~~L~EREk~FEeek~~EL~~I 582 (1047)
++.+....+..+- .++.|+.++.+.+..=.++- .++.-+++-||..|.-=+.++|-...+-.-+.+.-
T Consensus 618 lee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~-~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~-------- 688 (859)
T PF01576_consen 618 LEELREALEQAERARKQAESELDELQERLNELTSQN-SSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKA-------- 688 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 4444333333222 33445555555443322111 12334667777766655555554433332222221
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHH
Q 001600 583 SSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQK 637 (1047)
Q Consensus 583 N~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~K 637 (1047)
..|...+..|..|+..-..-.+.+...|..|+.+..+|+-=|+++-....+
T Consensus 689 ----kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~ 739 (859)
T PF01576_consen 689 ----KKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALK 739 (859)
T ss_dssp -------------------------------------------------------
T ss_pred ----HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 123344555666666666677778888899999999999888888765543
No 29
>PRK12704 phosphodiesterase; Provisional
Probab=96.19 E-value=0.21 Score=59.12 Aligned_cols=77 Identities=25% Similarity=0.325 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001600 284 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 363 (1047)
Q Consensus 284 K~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK 363 (1047)
+.+++.|+...|..++.++..+ +.+|..+|..|.+|+..|+.+.+.|..++.+|..+-+.|..+++.|...++
T Consensus 59 ~leaeeE~~~~R~Ele~e~~~~-------e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~ 131 (520)
T PRK12704 59 LLEAKEEIHKLRNEFEKELRER-------RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE 131 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555443 444555666677777777777777777777777776666666666665555
Q ss_pred HhHH
Q 001600 364 EADL 367 (1047)
Q Consensus 364 ~le~ 367 (1047)
+++.
T Consensus 132 ~~~~ 135 (520)
T PRK12704 132 ELEE 135 (520)
T ss_pred HHHH
Confidence 5543
No 30
>PRK11637 AmiB activator; Provisional
Probab=96.16 E-value=2.2 Score=48.90 Aligned_cols=46 Identities=9% Similarity=0.096 Sum_probs=22.1
Q ss_pred HHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhH
Q 001600 232 SLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHE 277 (1047)
Q Consensus 232 ~l~~rEee~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh~ 277 (1047)
.|...+.++......+...+.+|..++.+|..+...-=+.+-+-+.
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555555555555555554433333444444
No 31
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.13 E-value=6.5 Score=50.15 Aligned_cols=300 Identities=23% Similarity=0.292 Sum_probs=178.1
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHH---HH
Q 001600 139 SRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE---EK 215 (1047)
Q Consensus 139 rRerlSf~aE~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNqREe~~~e~~~~l~~kEkeLEeak~kie---~~ 215 (1047)
|++.++.--|-+-+...|..-=+.+.++=..|.+..+.|..-|.+=++| +.-+++.-.++|-++...++ ..
T Consensus 172 reeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~r------r~lEYtiYdrEl~E~~~~l~~le~~ 245 (1200)
T KOG0964|consen 172 REESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKER------RSLEYTIYDRELNEINGELERLEED 245 (1200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH------hhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 3455666677788888888888888888888888888888888776655 34456666667766666544 33
Q ss_pred HHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHH---HHhhhhhHHHHHHHHHhHHHhhhhhhhHHHHHH
Q 001600 216 FKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQE---TLASKESNEIQKIIANHESALRVKQSEFEAELA 292 (1047)
Q Consensus 216 ~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkeLl~leE---KL~aRE~~EIQKLldeh~a~L~~KK~EFElElE 292 (1047)
+.+.-++-+++. ..+..++.+.......+..-|..|..|-+ .+.+++..-+++. +.|..+..+|--+++
T Consensus 246 r~~~~e~s~~~~---~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~k-----t~lel~~kdlq~~i~ 317 (1200)
T KOG0964|consen 246 RSSAPEESEQYI---DALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKK-----TKLELKIKDLQDQIT 317 (1200)
T ss_pred HhccchhhhhHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhhhhhHHHHHHhh
Confidence 344444433333 33445556666666666666665555533 4445555444433 334444444433333
Q ss_pred HH---hhhHHHHHHHHHHHHHhhhhhhhhhH---HHHHhhhhhHHHHHHHHHHhhhhHHHH------hhhhHHHHhhhHH
Q 001600 293 IK---YKLAEDEIEKKRRAWELRDLDLGQRE---ESLLEREHDLEVQSRALVDKEKDLVER------SHLLEEKENKLIA 360 (1047)
Q Consensus 293 ~k---rKs~eeEle~K~~~~E~rEvel~h~E---ekl~kREqaLe~k~~~lkEKEkdl~~K------sk~LKEkEksLka 360 (1047)
-- |++.-..++.=-...+.++.+++..+ ..+...|..+...+..+..+..||-+| ++.-+++++=|+.
T Consensus 318 ~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ 397 (1200)
T KOG0964|consen 318 GNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRS 397 (1200)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHH
Confidence 21 11111111111111222222222222 122333344444444444444444433 3444667777776
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 001600 361 FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMV 440 (1047)
Q Consensus 361 eEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~Llk 440 (1047)
+=..| +.-+..-++..+.+.-|++-....+++...+|..-...+.-++..-.++...-..||++.|..-.....|--
T Consensus 398 ei~~l---~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWR 474 (1200)
T KOG0964|consen 398 EIEKL---KRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWR 474 (1200)
T ss_pred HHHHH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666 777888888888888888888888888777777777777777777788888888888888887666666767
Q ss_pred hhHHHHHHHHHHHHH
Q 001600 441 ETDKLQLEKAKFEAE 455 (1047)
Q Consensus 441 Eae~Lk~eKekFE~E 455 (1047)
|.-.|+..-++.+-+
T Consensus 475 EE~~l~~~i~~~~~d 489 (1200)
T KOG0964|consen 475 EEKKLRSLIANLEED 489 (1200)
T ss_pred HHHHHHHHHHHHHHH
Confidence 766777666665543
No 32
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=95.75 E-value=0.44 Score=56.45 Aligned_cols=75 Identities=28% Similarity=0.319 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001600 284 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 363 (1047)
Q Consensus 284 K~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK 363 (1047)
+.+++.|+...|..++.+++.+ +.++..+|..|.+|+..|+.+.+.|..+++.|..+.+.|..+++.|....+
T Consensus 53 ~~EaeeE~~~~R~Ele~el~~~-------e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~ 125 (514)
T TIGR03319 53 LLEAKEEVHKLRAELERELKER-------RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEE 125 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555565555555444 444555566666666666666666666666666666666666665555555
Q ss_pred Hh
Q 001600 364 EA 365 (1047)
Q Consensus 364 ~l 365 (1047)
++
T Consensus 126 e~ 127 (514)
T TIGR03319 126 EL 127 (514)
T ss_pred HH
Confidence 44
No 33
>PRK11637 AmiB activator; Provisional
Probab=95.73 E-value=5.2 Score=45.91 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhh
Q 001600 369 KSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMK 411 (1047)
Q Consensus 369 k~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~Lkitk 411 (1047)
-.++..++.++...+.+++..++.++..+......+..|...+
T Consensus 172 l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k 214 (428)
T PRK11637 172 IAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQAR 214 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555566665555555555555555444444444
No 34
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.69 E-value=2.3 Score=47.46 Aligned_cols=166 Identities=20% Similarity=0.169 Sum_probs=117.0
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhh
Q 001600 331 EVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAM 410 (1047)
Q Consensus 331 e~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~Lkit 410 (1047)
=+...++..|..=++=+++.+..--..|...-..|......|.+..+.+..+...+....+.+..+...+...... +.
T Consensus 127 vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e--~~ 204 (325)
T PF08317_consen 127 VKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE--IE 204 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hh
Confidence 3444555556666666666666666655555555555555555555555555555555555555555544444333 22
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001600 411 KSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDS 490 (1047)
Q Consensus 411 keER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~er 490 (1047)
.-+..++ ..||++|.....+-..+-++.++|+.++..-...++.+.+++.++..+.......++....|=.+|-.+
T Consensus 205 ~~D~~eL----~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~ 280 (325)
T PF08317_consen 205 SCDQEEL----EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKR 280 (325)
T ss_pred hcCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 2334444 346677777777888888889999999999999999999999999999999999999889999999999
Q ss_pred hHHHHHHHHHHH
Q 001600 491 LRQERDAMRDQH 502 (1047)
Q Consensus 491 LK~Ek~~~r~~~ 502 (1047)
||..-+.++...
T Consensus 281 Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 281 LKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHH
Confidence 999988887654
No 35
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.54 E-value=4.5 Score=43.88 Aligned_cols=232 Identities=21% Similarity=0.340 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhhhhHHHHHHHH
Q 001600 423 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSK---SLKDERDSLRQERDAMR 499 (1047)
Q Consensus 423 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek---~~~~E~erLK~Ek~~~r 499 (1047)
.|...||.+-.++--|..+.+.|+.+...|..-|+..-..+..++.+...+...-..... .+.+.-..|+.+.+-++
T Consensus 58 ~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 58 ELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 344677777777777777777777788888888887777777776666555543333222 24456677888888888
Q ss_pred HHHHhhhhhhhhhHH-HHHHhhhhh-hhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001600 500 DQHKRDVDSLNRERE-EFMNKMVHE-HSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMR 577 (1047)
Q Consensus 500 ~~~krelEsL~~ekE-sF~~kMehE-rs~~~eKiq~Erad~l~d~EmqkreLE~~i~~R~EEiE~~L~EREk~FEeek~~ 577 (1047)
..|..++..|...-. .+...|..- ...+..-+..=| ...+..+.+-+.++|..++.+-......-..
T Consensus 138 ~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR-----------~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~ 206 (312)
T PF00038_consen 138 QNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIR-----------AQYEEIAQKNREELEEWYQSKLEELRQQSEK 206 (312)
T ss_dssp HHHHHHHHTTSTT----------------HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhccccccceeecccccccchhhhhhHH-----------HHHHHHHhhhhhhhhhhcccccccccccccc
Confidence 888888888877553 222222210 122222233333 3444445555555555555544443333333
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001600 578 EFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEE-LMVQRQKLEEQRQLLHADREEIQAES 656 (1047)
Q Consensus 578 EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIee-L~~ls~KLk~QRE~~~~ERe~f~~~v 656 (1047)
--..+.+ +..|+-.++..+..|..+-.-+......|+.+..++....+. +......+......+..=|..+-.++
T Consensus 207 ~~~~~~~----~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 207 SSEELES----AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccch----hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 2222222 233444444444444444444444455555555554433332 22233333344444444455555555
Q ss_pred HHhhhhhhHHhHH
Q 001600 657 ERLKKLEDLKIAV 669 (1047)
Q Consensus 657 E~lK~ckncg~~~ 669 (1047)
..+..+-|-+...
T Consensus 283 ~ey~~Ll~~K~~L 295 (312)
T PF00038_consen 283 REYQELLDVKLAL 295 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH
Confidence 5555555554443
No 36
>PRK00106 hypothetical protein; Provisional
Probab=95.43 E-value=1.2 Score=53.42 Aligned_cols=75 Identities=27% Similarity=0.297 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001600 284 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 363 (1047)
Q Consensus 284 K~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK 363 (1047)
+.+++.|+...|..++.++...+.. +..+|..|.+|+..|+.+.+.|..+++.|..+.+.|..+++.+....+
T Consensus 74 ~lEaeeEi~~~R~ElEkel~eEr~r-------L~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~ 146 (535)
T PRK00106 74 LLEAKEEARKYREEIEQEFKSERQE-------LKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREE 146 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555444433 444455555555555555555555555555555555555555544444
Q ss_pred Hh
Q 001600 364 EA 365 (1047)
Q Consensus 364 ~l 365 (1047)
++
T Consensus 147 ~~ 148 (535)
T PRK00106 147 QV 148 (535)
T ss_pred HH
Confidence 44
No 37
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.38 E-value=13 Score=48.27 Aligned_cols=68 Identities=18% Similarity=0.273 Sum_probs=46.5
Q ss_pred hHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHH
Q 001600 38 SAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEA 105 (1047)
Q Consensus 38 ~ALsEaeKREEnLkKALgvEKqCVadLEKAL~Emr~E~AeiK~taesKLaEA~aLv~~~eeKs~EaE~ 105 (1047)
.+...++.+...++..+.--..=...|.....+.+.++..-+-++.+.++..+.-+..|+.+...-+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~ 341 (1201)
T PF12128_consen 274 ADEQQLEQEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYED 341 (1201)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555566666555556666777777777777777788888888888888888777666543
No 38
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.02 E-value=6.5 Score=42.70 Aligned_cols=248 Identities=19% Similarity=0.237 Sum_probs=123.3
Q ss_pred hhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhc
Q 001600 132 VAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRAN 211 (1047)
Q Consensus 132 EaRE~~LrRerlSf~aE~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNqREe~~~e~~~~l~~kEkeLEeak~k 211 (1047)
++--..||+..-....+....+-++..-+..+.++..++... .......+.++...++-
T Consensus 53 e~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e---------------------~~~~~~le~el~~lrk~ 111 (312)
T PF00038_consen 53 EEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE---------------------LAERKDLEEELESLRKD 111 (312)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHhhhhhh
Confidence 444456777777777888888888888888888888777766 44445556666666666
Q ss_pred HHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHH-HHHHhHHHhhhhhhhHHHH
Q 001600 212 VEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQK-IIANHESALRVKQSEFEAE 290 (1047)
Q Consensus 212 ie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQK-Lldeh~a~L~~KK~EFElE 290 (1047)
++.+..+..+-+..|. .|. ++++-+ -..-+.++..|...+...-.+++.. --.+-..+|..=+.+|+..
T Consensus 112 ld~~~~~r~~le~~i~----~L~---eEl~fl---~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~ 181 (312)
T PF00038_consen 112 LDEETLARVDLENQIQ----SLK---EELEFL---KQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEI 181 (312)
T ss_dssp HHHHHHHHHHHHHHHH----HHH---HHHHHH---HHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHH
T ss_pred hhhhhhhHhHHHHHHH----HHH---HHHHHH---HhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHH
Confidence 6655554433333222 221 122222 2334567777777665333333221 1122344455555667777
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhh---HHHHhhhhHHHHhhhHHHHHHhHH
Q 001600 291 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKD---LVERSHLLEEKENKLIAFEKEADL 367 (1047)
Q Consensus 291 lE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkd---l~~Ksk~LKEkEksLkaeEK~le~ 367 (1047)
+...+..++.-...|+.++... +..-..++..-...+.+.-.. |...+..|+.+- .+.+..|..
T Consensus 182 ~~~~~~e~e~~y~~k~~~l~~~----------~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~---~~Le~~l~~ 248 (312)
T PF00038_consen 182 AQKNREELEEWYQSKLEELRQQ----------SEKSSEELESAKEELKELRRQIQSLQAELESLRAKN---ASLERQLRE 248 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred Hhhhhhhhhhhccccccccccc----------ccccccccchhHhHHHHHHhhhhHhhhhhhccccch---hhhhhhHHH
Confidence 7777777777777776665432 111222222222222222222 222222222221 122222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 001600 368 KKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRA 433 (1047)
Q Consensus 368 ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~ 433 (1047)
-...+..+. ....+.+..-..++...+..+...-.|-.+++...+.|--||..||.
T Consensus 249 le~~~~~~~----------~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~ 304 (312)
T PF00038_consen 249 LEQRLDEER----------EEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRK 304 (312)
T ss_dssp HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----------HHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 122222222 22222333333344444455555566677888888999999999996
No 39
>PRK12704 phosphodiesterase; Provisional
Probab=94.98 E-value=0.33 Score=57.48 Aligned_cols=63 Identities=32% Similarity=0.339 Sum_probs=30.9
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhh
Q 001600 293 IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKL 358 (1047)
Q Consensus 293 ~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL 358 (1047)
..+..++.++...+.+++ .++..++..+.+||..|+.+.+.|..++..|+.+-..|..+++.|
T Consensus 57 e~~leaeeE~~~~R~Ele---~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~L 119 (520)
T PRK12704 57 EALLEAKEEIHKLRNEFE---KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKEL 119 (520)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344456655555554 445555666666665555544444444444444444444333333
No 40
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.75 E-value=11 Score=43.93 Aligned_cols=93 Identities=19% Similarity=0.296 Sum_probs=53.8
Q ss_pred HhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 001600 388 KSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELR 467 (1047)
Q Consensus 388 K~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~ 467 (1047)
..++.++.++..+......++....+..++..--.+|...|..+|.....+..+...|+.+..+.+..=..+.++-..+.
T Consensus 306 d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~ 385 (562)
T PHA02562 306 DKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQ 385 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHH
Confidence 34555555566666666655555556666655556666666666666666666666666666666665444444444444
Q ss_pred HHHHHHHHHHHHH
Q 001600 468 KEAERVAVERVVV 480 (1047)
Q Consensus 468 KEa~~I~eEre~l 480 (1047)
.++..+..++..+
T Consensus 386 ~~l~~~~~~~~~~ 398 (562)
T PHA02562 386 DELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 41
>PRK00106 hypothetical protein; Provisional
Probab=94.73 E-value=1.4 Score=52.82 Aligned_cols=13 Identities=23% Similarity=0.393 Sum_probs=9.9
Q ss_pred cccchhhhhhccC
Q 001600 829 SEDGIHAARKRRV 841 (1047)
Q Consensus 829 ~~~~~~agrkrr~ 841 (1047)
.--++||||-=||
T Consensus 475 ~~yaiqaGREiRv 487 (535)
T PRK00106 475 NSFALQAGREIRI 487 (535)
T ss_pred HHHHHhcCCeEEE
Confidence 3456899998886
No 42
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=94.72 E-value=0.42 Score=56.58 Aligned_cols=70 Identities=29% Similarity=0.291 Sum_probs=36.5
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHh
Q 001600 293 IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA 365 (1047)
Q Consensus 293 ~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~l 365 (1047)
..+..++.++..++.+++ .++..++..+.+||..|+.+.+.|..++..|+.+-..|..+++.|..-++++
T Consensus 51 e~~~EaeeE~~~~R~Ele---~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eL 120 (514)
T TIGR03319 51 EALLEAKEEVHKLRAELE---RELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNL 120 (514)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344456655555554 4455556666666666555555555555555554444444444444444433
No 43
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.34 E-value=23 Score=45.89 Aligned_cols=95 Identities=20% Similarity=0.264 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHhhhhhhhhhHHHHHHHHHH
Q 001600 425 KEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERV---VVSKSLKDERDSLRQERDAMRDQ 501 (1047)
Q Consensus 425 KeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre---~lek~~~~E~erLK~Ek~~~r~~ 501 (1047)
+-.|...........+.+..++..-++|+++|..++-++++..+|.+.....|- ++..-...|.++|+.+-...-
T Consensus 302 k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~-- 379 (1141)
T KOG0018|consen 302 KKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEA-- 379 (1141)
T ss_pred hhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhh--
Confidence 334444444555566778889999999999999999999999999999887654 455556667888887655443
Q ss_pred HHhhhhhhhhhHHHHHHhhhh
Q 001600 502 HKRDVDSLNREREEFMNKMVH 522 (1047)
Q Consensus 502 ~krelEsL~~ekEsF~~kMeh 522 (1047)
..+|+.|++...+=-+...|
T Consensus 380 -~~el~~ln~~~r~~~~~ld~ 399 (1141)
T KOG0018|consen 380 -LEELEVLNRNMRSDQDTLDH 399 (1141)
T ss_pred -HHHHHHHHHHHHHHHHHHhh
Confidence 66777776665554444443
No 44
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=94.22 E-value=1.1 Score=46.93 Aligned_cols=70 Identities=33% Similarity=0.395 Sum_probs=45.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhH
Q 001600 290 ELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLI 359 (1047)
Q Consensus 290 ElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLk 359 (1047)
++...|..++.++..++.++..+|..|..+|+.|..+...|+.+...|..++.+|..+...|+.++..+.
T Consensus 61 e~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~ 130 (201)
T PF12072_consen 61 EAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555777888888888888777777666666666666666666666665555555555555555544444
No 45
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.94 E-value=20 Score=43.64 Aligned_cols=311 Identities=17% Similarity=0.187 Sum_probs=170.4
Q ss_pred HHHHHHHHH----hhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHH
Q 001600 64 LEKAVHEIR----AESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLS 139 (1047)
Q Consensus 64 LEKAL~Emr----~E~AeiK~taesKLaEA~aLv~~~eeKs~EaE~KL~aAea~~AEa~Rk~s~aeRKL~eVEaRE~~Lr 139 (1047)
|+.-+..+| .+...||+.++.=++.|.-+|+.+......++..+.....-+.++-.+.-.+
T Consensus 68 L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~--------------- 132 (546)
T KOG0977|consen 68 LEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKA--------------- 132 (546)
T ss_pred HHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---------------
Confidence 455555555 4678899999999999999999998888888777766655555543332222
Q ss_pred HHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHH
Q 001600 140 RRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKAL 219 (1047)
Q Consensus 140 RerlSf~aE~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNqREe~~~e~~~~l~~kEkeLEeak~kie~~~~~L 219 (1047)
++...--|+++.+|...|-+.+.-++-.++.+..=++.+...-+...++..+|..+++-++.+...-
T Consensus 133 -------------~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr 199 (546)
T KOG0977|consen 133 -------------EKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLR 199 (546)
T ss_pred -------------HHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 1222234677788888888888888888877777777777777778888888888888887775443
Q ss_pred hhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhh-HHHHHHH-HHhHHHhhhhhhhHHHHHHHHhhh
Q 001600 220 NEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKES-NEIQKII-ANHESALRVKQSEFEAELAIKYKL 297 (1047)
Q Consensus 220 k~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkeLl~leEKL~aRE~-~EIQKLl-deh~a~L~~KK~EFElElE~krKs 297 (1047)
.+-...+..-+..|.-.. ..=+.+|.+..-+ ..|+. ...+... ++-..++.-=+.+||.-+..-|+.
T Consensus 200 ~d~~n~~q~Lleel~f~~----------~~h~~eI~e~~~~-~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~d 268 (546)
T KOG0977|consen 200 VDLQNRVQTLLEELAFLK----------RIHKQEIEEERRK-ARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKD 268 (546)
T ss_pred HHHHhHHHHHHHHHHHHH----------hccHHHHHHHHHH-HhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333322222222221111 1122233322221 12221 1111110 011122222344566666667777
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHH
Q 001600 298 AEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKE 377 (1047)
Q Consensus 298 ~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKE 377 (1047)
++.=.+.|+.++...=.--+ ..-+..-+.|...-.-+.+-..-|-+-|..-.+.++.|+.=+.+|..|+.
T Consensus 269 iE~~Y~~kI~~i~~~~~~~~----------~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r 338 (546)
T KOG0977|consen 269 IESWYKRKIQEIRTSAERAN----------VEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQR 338 (546)
T ss_pred HHHHHHHHHHHHHhhhcccc----------chhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhh
Confidence 77777777766653100000 00011111222222222222222333344555556666666777777766
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 001600 378 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRA 433 (1047)
Q Consensus 378 el~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~ 433 (1047)
.....=.+.+...+.+-++..++.- |...|+-.+.-|--||..||.
T Consensus 339 ~~e~~L~~kd~~i~~mReec~~l~~----------Elq~LlD~ki~Ld~EI~~YRk 384 (546)
T KOG0977|consen 339 SFEQALNDKDAEIAKMREECQQLSV----------ELQKLLDTKISLDAEIAAYRK 384 (546)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH----------HHHHhhchHhHHHhHHHHHHH
Confidence 6655555555444444444444443 444455555788889999985
No 46
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.43 E-value=19 Score=41.93 Aligned_cols=98 Identities=27% Similarity=0.278 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHH
Q 001600 368 KKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQL 447 (1047)
Q Consensus 368 ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~ 447 (1047)
+...|.++...+.....+++.......+...++.+-...+....+. -..+..++..++...+.|.....++..
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~-------i~~~~~~~~~l~~ei~~l~~~~~~~~~ 379 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQS-------LITLVDKAKKVKAAIEELQAEFVDNAE 379 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhchHH
Confidence 4444444444444444444444443333333333333333333322 233666777777777778777888888
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Q 001600 448 EKAKFEAEWEMIDEKREELRKEAER 472 (1047)
Q Consensus 448 eKekFE~EWE~LDEKR~eL~KEa~~ 472 (1047)
+....+.+|..+...++++.++...
T Consensus 380 ~l~~l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 380 ELAKLQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999876
No 47
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.24 E-value=34 Score=44.19 Aligned_cols=114 Identities=22% Similarity=0.285 Sum_probs=59.7
Q ss_pred HHhHHhHHHHHHHHhhhhhHHHHHHHHH---hHHHhhhhhhhHHH--HHHHHhhhHH-----HHHHHHHHHHHhhhhhhh
Q 001600 248 QKKEQKLLVSQETLASKESNEIQKIIAN---HESALRVKQSEFEA--ELAIKYKLAE-----DEIEKKRRAWELRDLDLG 317 (1047)
Q Consensus 248 e~KEkeLl~leEKL~aRE~~EIQKLlde---h~a~L~~KK~EFEl--ElE~krKs~e-----eEle~K~~~~E~rEvel~ 317 (1047)
+.+|.-|.+++|+-..+++ |+.||.. -=-.|+.-|-+++. +|+..|++++ .|+..=+..++.-|.+..
T Consensus 170 erreeSlkim~ET~qK~ek--I~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~ 247 (1200)
T KOG0964|consen 170 ERREESLKIMEETKQKREK--INELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRS 247 (1200)
T ss_pred HhHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 4566777788888887765 5555543 22333333433332 5667777764 333333344444444333
Q ss_pred h---hHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001600 318 Q---REESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 363 (1047)
Q Consensus 318 h---~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK 363 (1047)
. .=..+.-+-....-.++.++..=+.|+.++..|.+--..+.+.+-
T Consensus 248 ~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t 296 (1200)
T KOG0964|consen 248 SAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARET 296 (1200)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222222222233334555555666677777777775555555543
No 48
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.82 E-value=48 Score=44.73 Aligned_cols=145 Identities=19% Similarity=0.253 Sum_probs=75.4
Q ss_pred HHhHHHHHHHHHhhhhhhhhhh-hhh-----hh---------------HHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhc
Q 001600 61 IASLEKAVHEIRAESAETKVAA-DSK-----FA---------------EARCMVENAQKKFAEAEAKLHAAESLQAEANR 119 (1047)
Q Consensus 61 VadLEKAL~Emr~E~AeiK~ta-esK-----La---------------EA~aLv~~~eeKs~EaE~KL~aAea~~AEa~R 119 (1047)
|.+|+.+|++.|--.-.||+|. +.- +. +-+.|++.| +-.-.|+..|..++..+..
T Consensus 232 i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~~r~~eERR~liEEA----ag~r~rk~eA~kkLe~tE~ 307 (1486)
T PRK04863 232 FQDMEAALRENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRVHLEEA----LELRRELYTSRRQLAAEQY 307 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 4566677777666666666543 111 11 222333333 2233566666666666666
Q ss_pred chhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHh
Q 001600 120 YHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELS 199 (1047)
Q Consensus 120 k~s~aeRKL~eVEaRE~~LrRerlSf~aE~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNqREe~~~e~~~~l~ 199 (1047)
+...++..+.+++.+...|++++-....-....+ ++...-..+..+...+.+...++.+....+.+-.+.+.+....+.
T Consensus 308 nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEle 386 (1486)
T PRK04863 308 RLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAE 386 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777777777777776665543322222 222223344444444555555555555555555555555555555
Q ss_pred HhHHHHHHHhh
Q 001600 200 RKEKELEASRA 210 (1047)
Q Consensus 200 ~kEkeLEeak~ 210 (1047)
..+.++..++.
T Consensus 387 elEeeLeeLqe 397 (1486)
T PRK04863 387 AAEEEVDELKS 397 (1486)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 49
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=90.83 E-value=43 Score=40.13 Aligned_cols=147 Identities=22% Similarity=0.281 Sum_probs=78.1
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001600 357 KLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKL 436 (1047)
Q Consensus 357 sLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke 436 (1047)
.|.+..++|+.-+..|.+-+.++..|...++.++.+++..+..+..-+++.......- .-|..++..+|..-.
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v-------~~L~~eL~~~r~eLe 354 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEV-------SSLEAELNKTRSELE 354 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------hhHHHHHHHHHHHHH
Confidence 3667777787778888888888888888888888888877777777777665555433 334444444444443
Q ss_pred HhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHH
Q 001600 437 ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEF 516 (1047)
Q Consensus 437 ~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelEsL~~ekEsF 516 (1047)
....+..+.+ ..|..|--.-.++..|++....+. .....|-..++.+-..++..+.-=-..|......+
T Consensus 355 a~~~~e~~~k-------~~~~~l~~~Lqql~~Eae~Ak~ea----~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~ 423 (522)
T PF05701_consen 355 AAKAEEEKAK-------EAMSELPKALQQLSSEAEEAKKEA----EEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEA 423 (522)
T ss_pred HHHhhhcchh-------hhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322221 123333333333333333332111 12233455555555555555544444444444444
Q ss_pred HHhhh
Q 001600 517 MNKMV 521 (1047)
Q Consensus 517 ~~kMe 521 (1047)
.+-..
T Consensus 424 eaaKa 428 (522)
T PF05701_consen 424 EAAKA 428 (522)
T ss_pred HHHHH
Confidence 44333
No 50
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=90.79 E-value=57 Score=41.41 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHH
Q 001600 375 EKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKA 450 (1047)
Q Consensus 375 eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKe 450 (1047)
.+-...-+|..+......+......+-.-+-+|+.+.+.=+++-.==..||..+-........|..++|.|+..-+
T Consensus 278 ~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle 353 (775)
T PF10174_consen 278 YKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLE 353 (775)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333444555566666666666655666666666666555555433445666777777777777888777766543
No 51
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.57 E-value=84 Score=41.54 Aligned_cols=136 Identities=18% Similarity=0.218 Sum_probs=95.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhh
Q 001600 380 NIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMI 459 (1047)
Q Consensus 380 ~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~L 459 (1047)
..+..++.++...+..-..++.+++..+.+.++|=.-|+-.+..+..-.+.+-....-+++..++.+..--....+...+
T Consensus 475 ~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~ 554 (1293)
T KOG0996|consen 475 EGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSL 554 (1293)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34566777777888888889999999999999998888888888887788777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH--hhhhhhhhhHHH
Q 001600 460 DEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHK--RDVDSLNREREE 515 (1047)
Q Consensus 460 DEKR~eL~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~k--relEsL~~ekEs 515 (1047)
--+..++.+++.....+=..+...++.=+.++-.-+..|...-. .=+.+|.+.+++
T Consensus 555 k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kes 612 (1293)
T KOG0996|consen 555 KQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKES 612 (1293)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHc
Confidence 77777777777776666666665555444444444443332222 235667666664
No 52
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=89.55 E-value=43 Score=38.14 Aligned_cols=54 Identities=22% Similarity=0.354 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHH
Q 001600 328 HDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNI 381 (1047)
Q Consensus 328 qaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~ 381 (1047)
..|..++..+.++--+|-.+.+.+.++=+++++....|..+-.+|-..+.+++.
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~ 83 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINA 83 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777777777777777777776666666666665543
No 53
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.45 E-value=73 Score=40.63 Aligned_cols=116 Identities=23% Similarity=0.302 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q 001600 373 QKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKF 452 (1047)
Q Consensus 373 ~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekF 452 (1047)
.+-++.+.+=.++|++-|-.+++|.++-.++.++.+--+.+|-+-.|++.+=|.+++ |.++.++-+
T Consensus 316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlE--------lekqLerQR------ 381 (1118)
T KOG1029|consen 316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLE--------LEKQLERQR------ 381 (1118)
T ss_pred hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH------
Confidence 356778888899999999999999999999999999999998888888776665544 333332211
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhh
Q 001600 453 EAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDS 508 (1047)
Q Consensus 453 E~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelEs 508 (1047)
|.=-.+-++-.|+.++-.--|+.+++...-|-++.|. ..|.+|..|+-|-
T Consensus 382 ----eiE~qrEEerkkeie~rEaar~ElEkqRqlewErar~--qem~~Qk~reqe~ 431 (1118)
T KOG1029|consen 382 ----EIERQREEERKKEIERREAAREELEKQRQLEWERARR--QEMLNQKNREQEW 431 (1118)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHH
Confidence 1111122223334444444556666666666665543 3444444444443
No 54
>PRK12705 hypothetical protein; Provisional
Probab=89.27 E-value=22 Score=42.90 Aligned_cols=61 Identities=26% Similarity=0.396 Sum_probs=34.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhh
Q 001600 291 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKL 358 (1047)
Q Consensus 291 lE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL 358 (1047)
+...|..++.+++.++.++..+ |..+.+||+.|+.+.+.|..++..|..+.+.|..+++.+
T Consensus 61 ~~~~~~~~e~e~~~~~~~~~~~-------e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~ 121 (508)
T PRK12705 61 LLRERNQQRQEARREREELQRE-------EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELEL 121 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666655555 444666666666666666666665555555444444433
No 55
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=88.95 E-value=12 Score=39.41 Aligned_cols=59 Identities=25% Similarity=0.383 Sum_probs=38.4
Q ss_pred HHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhH
Q 001600 308 AWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEAD 366 (1047)
Q Consensus 308 ~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le 366 (1047)
++..+..++..+|..+.+||..|+.+.+.|..++..|+.+...|..+...|..-+..++
T Consensus 72 E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~ 130 (201)
T PF12072_consen 72 ELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777777777776666666666666655555555553
No 56
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.77 E-value=1.1e+02 Score=40.60 Aligned_cols=223 Identities=21% Similarity=0.308 Sum_probs=124.1
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001600 405 DKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSL 484 (1047)
Q Consensus 405 E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~ 484 (1047)
++....+.++.++-+--.+.++....+-.....|+++.+..+-.+..|++.-|-.+..-+..+.|...+.+..+..++-+
T Consensus 384 n~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l 463 (1293)
T KOG0996|consen 384 NKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEEREL 463 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667777777777888888888888888888888888888888888888888888888888877777776666666
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHh---hhhhHhhhhhhHHHHHHHHHHHH
Q 001600 485 KDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADF---LLGIEMQKRDLENCIEKRREELE 561 (1047)
Q Consensus 485 ~~E~erLK~Ek~~~r~~~krelEsL~~ekEsF~~kMehErs~~~eKiq~Erad~---l~d~EmqkreLE~~i~~R~EEiE 561 (1047)
....+.|+++=.+.+..+ +.....|. -|..++..-|+.+ --++++.. ...+...++.++..
T Consensus 464 ~e~~~~l~~~t~~~~~e~-----------~~~ekel~----~~~~~~n~~~~e~~vaesel~~L~-~~~~~~~~~~e~lk 527 (1293)
T KOG0996|consen 464 DEILDSLKQETEGIREEI-----------EKLEKELM----PLLKQVNEARSELDVAESELDILL-SRHETGLKKVEELK 527 (1293)
T ss_pred HHHHHHHhhhhhhhHHHH-----------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 655555555555544444 33333332 2333333333322 22233322 23445566667776
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHH
Q 001600 562 SSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQ 641 (1047)
Q Consensus 562 ~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~Q 641 (1047)
+.|..-.....+.+. .|+.++..+ ..++.|+....+ +-.++-.. ++.---.|..+++++.+-
T Consensus 528 ~~L~~~~~~~~e~~~----~l~~~k~~l----~~~k~e~~~~~k-------~l~~~~~e---~~~~~~~~~~~rqrveE~ 589 (1293)
T KOG0996|consen 528 GKLLASSESLKEKKT----ELDDLKEEL----PSLKQELKEKEK-------ELPKLRKE---ERNLKSQLNKLRQRVEEA 589 (1293)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHhh----hhHHHHHHHHHH-------hHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 666655444444332 234444333 223333332222 22222221 222222344445555555
Q ss_pred HHHHHH--hHHHHHHHHHHhhh
Q 001600 642 RQLLHA--DREEIQAESERLKK 661 (1047)
Q Consensus 642 RE~~~~--ERe~f~~~vE~lK~ 661 (1047)
+..+.+ -|..++.++-++|.
T Consensus 590 ks~~~~~~s~~kVl~al~r~ke 611 (1293)
T KOG0996|consen 590 KSSLSSSRSRNKVLDALMRLKE 611 (1293)
T ss_pred HHHHHhhhhhhHHHHHHHHHHH
Confidence 554433 34556666666654
No 57
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=87.33 E-value=84 Score=38.79 Aligned_cols=216 Identities=18% Similarity=0.199 Sum_probs=119.9
Q ss_pred hHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhH
Q 001600 188 EDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESN 267 (1047)
Q Consensus 188 Ee~~~e~~~~l~~kEkeLEeak~kie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkeLl~leEKL~aRE~~ 267 (1047)
+....+..+.+..+++.|+++...|+.-...++.-...+......+...+.....++..+..+++=...|...=..- .
T Consensus 320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni--~ 397 (594)
T PF05667_consen 320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENI--A 397 (594)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH--H
Confidence 34455666677777777777777666666666555555555555555555455555544444444322222110000 2
Q ss_pred HHHHHHHHhHHHhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHH
Q 001600 268 EIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 347 (1047)
Q Consensus 268 EIQKLldeh~a~L~~KK~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~K 347 (1047)
.+|.+++. -..|..++..+.+..|.-+.++++.=+.... .++-+.-.+...++........-
T Consensus 398 kL~~~v~~----s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~--------------~~~~e~~~~~~~ik~~r~~~k~~ 459 (594)
T PF05667_consen 398 KLQALVEA----SEQRLVELAQQWEKHRAPLIEEYRRLKEKAS--------------NRESESKQKLQEIKELREEIKEI 459 (594)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh--------------hcchHHHHHHHHHHHHHHHHHHH
Confidence 22333322 2334455555555566555555443322222 22222223334444444444444
Q ss_pred hhhhHHHHhhhHHHHHHhHHH---------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHH
Q 001600 348 SHLLEEKENKLIAFEKEADLK---------KSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS 418 (1047)
Q Consensus 348 sk~LKEkEksLkaeEK~le~e---------k~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~l 418 (1047)
...++.|+...+...+.++.- ...++.=.-.|.+-|.||.|++..+-.=.++|+.-..+|.-|-.-.+|++
T Consensus 460 ~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEli 539 (594)
T PF05667_consen 460 EEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELI 539 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444444444444433333221 23455556678888999999999999999999999999999998888887
Q ss_pred HHHHH
Q 001600 419 VLEIK 423 (1047)
Q Consensus 419 rLQse 423 (1047)
-=.++
T Consensus 540 frdAK 544 (594)
T PF05667_consen 540 FRDAK 544 (594)
T ss_pred HHHhh
Confidence 76666
No 58
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=86.73 E-value=47 Score=35.35 Aligned_cols=143 Identities=20% Similarity=0.289 Sum_probs=92.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 001600 414 AGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQ 493 (1047)
Q Consensus 414 R~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~erLK~ 493 (1047)
|..-+.|-.-||++|...|......-+...++.++-.+.-.--..+.+.+++|++.+......+..|..... +++
T Consensus 22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~----rl~- 96 (201)
T PF13851_consen 22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKA----RLK- 96 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-
Confidence 445667778899999999999999999999999999999988888999999999888876665555544322 111
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHH---HhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhh-HHHHHHHHHHHHhHHHHHHH
Q 001600 494 ERDAMRDQHKRDVDSLNREREEFM---NKMVHEHSEWFTKIQQERADFLLGIEMQKRDL-ENCIEKRREELESSFREREK 569 (1047)
Q Consensus 494 Ek~~~r~~~krelEsL~~ekEsF~---~kMehErs~~~eKiq~Erad~l~d~EmqkreL-E~~i~~R~EEiE~~L~EREk 569 (1047)
....++..|..+.+.+. .+++.||.+|..+-.. +++|+. ||-.+ ..-++++...+...|..|+.
T Consensus 97 -------~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~----~i~evq-Qk~~~kn~lLEkKl~~l~~~lE~kea 164 (201)
T PF13851_consen 97 -------ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES----AIQEVQ-QKTGLKNLLLEKKLQALSEQLEKKEA 164 (201)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23455566666665553 3444555555554442 222322 22222 23445556666666666665
Q ss_pred HHHH
Q 001600 570 AFEE 573 (1047)
Q Consensus 570 ~FEe 573 (1047)
.+.+
T Consensus 165 qL~e 168 (201)
T PF13851_consen 165 QLNE 168 (201)
T ss_pred HHHH
Confidence 5543
No 59
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=86.19 E-value=1.6e+02 Score=40.84 Aligned_cols=344 Identities=18% Similarity=0.183 Sum_probs=166.4
Q ss_pred hhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhh-------hhhhHHHHHHHHHHhchHHHHHHH
Q 001600 98 KKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFK-------ADCEEKEREIIRERQSLSDRKKIL 170 (1047)
Q Consensus 98 eKs~EaE~KL~aAea~~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~-------aE~ea~E~~~~~qRe~L~eweKkL 170 (1047)
+.......=++..+.....++--...+..++.-+++.=+.|+.+-..|. .|.+++....+.++..|...+-..
T Consensus 710 er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~ 789 (1822)
T KOG4674|consen 710 ERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQK 789 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455556666777777777777788888888888888887776654 445555555555555555555444
Q ss_pred HHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHH----HhhhHHHH------
Q 001600 171 QQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVS----LLKREEAV------ 240 (1047)
Q Consensus 171 qe~eeRL~e~qrlLNqREe~~~e~~~~l~~kEkeLEeak~kie~~~~~Lk~ke~dl~~rl~~----l~~rEee~------ 240 (1047)
...++....+..-+++ .+..++.+|..++++++....-++.-..+++.-+.. +..-....
T Consensus 790 ~~~e~s~~~~k~~~e~----------~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~ 859 (1822)
T KOG4674|consen 790 NELEESEMATKDKCES----------RIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTS 859 (1822)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444442 234455555556665555555544444433333322 12222223
Q ss_pred -HHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHh---HHHhhhhhhhHHHHHHHH---hhhHHHHH---HHHHHHHH
Q 001600 241 -IEREASLQKKEQKLLVSQETLASKESNEIQKIIANH---ESALRVKQSEFEAELAIK---YKLAEDEI---EKKRRAWE 310 (1047)
Q Consensus 241 -~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh---~a~L~~KK~EFElElE~k---rKs~eeEl---e~K~~~~E 310 (1047)
+.....+.+.|..+..|..+|. .+.++.+..+. .....-+-..|..++++- +..|-... .+=-...-
T Consensus 860 l~~~~~~~~~le~k~~eL~k~l~---~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~ 936 (1822)
T KOG4674|consen 860 LDSVSTNIAKLEIKLSELEKRLK---SAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYS 936 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444443 35666666665 233333334466665554 22222222 11112222
Q ss_pred hhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhH--------HHHHH---hHHHHHHHHHHHHHH
Q 001600 311 LRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLI--------AFEKE---ADLKKSLLQKEKEEV 379 (1047)
Q Consensus 311 ~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLk--------aeEK~---le~ek~~L~~eKEel 379 (1047)
.-|.-|..+...+.+--+.++.+.+.+..+--.|+.++..|+..=..|. -.+++ +..+..-++.+...+
T Consensus 937 s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~ 1016 (1822)
T KOG4674|consen 937 SLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSL 1016 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHH
Confidence 3333344444444444444444444444444444444333332222221 11221 222333344444444
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh----hhHH---HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q 001600 380 NIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEA----GELS---VLEIKLKEELDVVRAQKLELMVETDKLQLEKAKF 452 (1047)
Q Consensus 380 ~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER----~E~l---rLQseLKeEId~~R~Qke~LlkEae~Lk~eKekF 452 (1047)
.....+..+....+...+..+ .+.+....+.- ..|. ..=.+|+++..+|-.+-..|-+.++-+...-..|
T Consensus 1017 ~~~~s~~~~~~~~~k~dl~~~---~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~ 1093 (1822)
T KOG4674|consen 1017 LKAASQANEQIEDLQNDLKTE---TEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQ 1093 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhc
Confidence 444444444333333333222 22222222211 1111 1224567777888888888888888888888888
Q ss_pred HHHHh
Q 001600 453 EAEWE 457 (1047)
Q Consensus 453 E~EWE 457 (1047)
++-|.
T Consensus 1094 ~~~w~ 1098 (1822)
T KOG4674|consen 1094 ERDWS 1098 (1822)
T ss_pred ccchH
Confidence 88885
No 60
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=86.10 E-value=5.4 Score=48.85 Aligned_cols=119 Identities=20% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhch-HHHHHHHHHHHHHHHHH
Q 001600 102 EAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSL-SDRKKILQQEHERLLDA 180 (1047)
Q Consensus 102 EaE~KL~aAea~~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~aE~ea~E~~~~~qRe~L-~eweKkLqe~eeRL~e~ 180 (1047)
+.|.++...........++..+++..++.+..++..+..++.....+....+..+......| .+-.-.+.+..+.....
T Consensus 90 ~le~~~~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el~~~~e~~~~~k~~le~~~~~L~~E~~~~~~e~~~~~~~l 169 (722)
T PF05557_consen 90 ELEKELRELQRQLEREFKRNQELEARLKQLEEREEELEEELEEAEEELEQLKRKLEEEKRRLQREKEQLLEEAREEISSL 169 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444455555555555555555444444444444444443222222 11111111111111112
Q ss_pred hhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHh
Q 001600 181 QTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALN 220 (1047)
Q Consensus 181 qrlLNqREe~~~e~~~~l~~kEkeLEeak~kie~~~~~Lk 220 (1047)
+.-+.+=.-.+......++..+.++++.+..++.-...+.
T Consensus 170 ~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~ 209 (722)
T PF05557_consen 170 KNELSELERQAENAESQIQSLESELEELKEQLEELQSELQ 209 (722)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2112222222344445556666666666666655554443
No 61
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.00 E-value=76 Score=36.12 Aligned_cols=167 Identities=23% Similarity=0.203 Sum_probs=114.4
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Q 001600 330 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA 409 (1047)
Q Consensus 330 Le~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~Lki 409 (1047)
|-+...++..|.-=++=|++-++.-...|...-..+......|.++-+-+..+...+....+.+..+..++......+..
T Consensus 121 lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~ 200 (312)
T smart00787 121 LVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELED 200 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 44555666666667777777766666666655555555555555555555666665555555555555554444433322
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001600 410 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD 489 (1047)
Q Consensus 410 tkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~e 489 (1047)
- +..++..+..+|++ .=.+-....++.++++.+...-...++..-+++.+++.+.......++....|=-.|-.
T Consensus 201 ~--d~~eL~~lk~~l~~----~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~ 274 (312)
T smart00787 201 C--DPTELDRAKEKLKK----LLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIE 274 (312)
T ss_pred C--CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 1 24556555555444 34445556677888999999999999999999999999998888888888889899999
Q ss_pred hhHHHHHHHHHHH
Q 001600 490 SLRQERDAMRDQH 502 (1047)
Q Consensus 490 rLK~Ek~~~r~~~ 502 (1047)
+|+..-..++..+
T Consensus 275 ~Lk~~~~~Le~l~ 287 (312)
T smart00787 275 KLKEQLKLLQSLT 287 (312)
T ss_pred HHHHHHHHHHHHh
Confidence 9999888887654
No 62
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=83.94 E-value=1.1e+02 Score=37.31 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=17.5
Q ss_pred HHHHHHHhhHhhhhh----hhhHHHHHHhHHHHHHHHH
Q 001600 39 AIAEARKREESLKKT----LGVEKECIASLEKAVHEIR 72 (1047)
Q Consensus 39 ALsEaeKREEnLkKA----LgvEKqCVadLEKAL~Emr 72 (1047)
.|+......+.|+.| ||+.- +..|.+-|..+.
T Consensus 160 ~la~~~~~~~~l~~Ai~~LlGl~~--~~~L~~dl~~~~ 195 (650)
T TIGR03185 160 ALANPDRLASLLKEAIEVLLGLDL--IDRLAGDLTNVL 195 (650)
T ss_pred HHhccccchHHHHHHHHHHhCcHH--HHHHHHHHHHHH
Confidence 344444445555555 78777 555555555543
No 63
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.47 E-value=84 Score=35.42 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhH
Q 001600 426 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMID 460 (1047)
Q Consensus 426 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LD 460 (1047)
.+|+.++.+...+....+.+..++..+..+=..++
T Consensus 230 ~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 230 KELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444433333
No 64
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=83.02 E-value=14 Score=45.43 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHh
Q 001600 9 KELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKR 46 (1047)
Q Consensus 9 KEwtSKyEeLkqa~~eae~~lKREqaAhl~ALsEaeKR 46 (1047)
.+..+++..|++.+...+.-+++.+-.|-.++++..++
T Consensus 64 ~~~k~~l~~Le~e~~~~~~e~~~~~~~le~~~~~l~~~ 101 (722)
T PF05557_consen 64 IELKAQLNQLEYELEQLKQEHERAQLELEKELRELQRQ 101 (722)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777777666666655544
No 65
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=81.24 E-value=66 Score=32.69 Aligned_cols=90 Identities=19% Similarity=0.289 Sum_probs=67.9
Q ss_pred HHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhH
Q 001600 116 EANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKL 195 (1047)
Q Consensus 116 Ea~Rk~s~aeRKL~eVEaRE~~LrRerlSf~aE~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNqREe~~~e~~ 195 (1047)
.|.-+...++-++++++.|-..+-.++.||..=..-.|.++..-...|.+-...|.++..+..... .-.
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E-----------~l~ 79 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE-----------QLN 79 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH-----------HHH
Confidence 344455667778888888888888889999888888888888888888888888888888776655 334
Q ss_pred HHHhHhHHHHHHHhhcHHHHH
Q 001600 196 QELSRKEKELEASRANVEEKF 216 (1047)
Q Consensus 196 ~~l~~kEkeLEeak~kie~~~ 216 (1047)
+-+..+|.+|+.+..++..+.
T Consensus 80 rriq~LEeele~ae~~L~e~~ 100 (143)
T PF12718_consen 80 RRIQLLEEELEEAEKKLKETT 100 (143)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 456667777777766665443
No 66
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=80.97 E-value=63 Score=35.46 Aligned_cols=77 Identities=26% Similarity=0.319 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHH
Q 001600 562 SSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQ 641 (1047)
Q Consensus 562 ~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~Q 641 (1047)
..++.+-..|+.-+..-++.+.++...- +=+++..-|+..|..||+ ..-+++-.|+.||..|.+.=..++..
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er~-------~h~eeLrqI~~DIn~lE~iIkqa~~e 75 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQERM-------AHVEELRQINQDINTLENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888888888777654 455555555555555554 45677888999999999888888877
Q ss_pred HHHHH
Q 001600 642 RQLLH 646 (1047)
Q Consensus 642 RE~~~ 646 (1047)
|....
T Consensus 76 r~~~~ 80 (230)
T PF10146_consen 76 RNKRQ 80 (230)
T ss_pred HHHHH
Confidence 77643
No 67
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=80.29 E-value=2.2e+02 Score=38.12 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=21.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 001600 620 EWAELNNSIEELMVQRQKLEEQRQLLHAD 648 (1047)
Q Consensus 620 e~aEm~kdIeeL~~ls~KLk~QRE~~~~E 648 (1047)
--.|++| +-+|..++.+|...|....++
T Consensus 1016 kE~EkrK-v~~L~qlr~~l~k~~l~~q~~ 1043 (1317)
T KOG0612|consen 1016 KEKEKRK-VMELSQLRTKLNKLRLKNQKE 1043 (1317)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhhhhHHH
Confidence 3457788 999999999998887665544
No 68
>PRK09039 hypothetical protein; Validated
Probab=80.20 E-value=1.2e+02 Score=34.87 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=73.3
Q ss_pred hhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhh
Q 001600 49 SLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKL 128 (1047)
Q Consensus 49 nLkKALgvEKqCVadLEKAL~Emr~E~AeiK~taesKLaEA~aLv~~~eeKs~EaE~KL~aAea~~AEa~Rk~s~aeRKL 128 (1047)
.|=-.|+.+...-++|+-.|.+|++.+. ++...-+.+....++...-..+++..+....+.+++..-.++++.+..
T Consensus 64 ~L~e~L~le~~~~~~l~~~l~~l~~~l~----~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V 139 (343)
T PRK09039 64 ELADLLSLERQGNQDLQDSVANLRASLS----AAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQV 139 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3777899999999999999999999888 233333333333332222233566666666666666666666777777
Q ss_pred HHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHH
Q 001600 129 QEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRK 167 (1047)
Q Consensus 129 ~eVEaRE~~LrRerlSf~aE~ea~E~~~~~qRe~L~ewe 167 (1047)
.-+-+.=.+||.++-+..++..+.+......+..+.+.+
T Consensus 140 ~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 140 ELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777766666666666655544333333333
No 69
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=79.46 E-value=2.4e+02 Score=37.94 Aligned_cols=205 Identities=20% Similarity=0.252 Sum_probs=106.9
Q ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHh----HHHHHHHhhcHHHHHHHHhhhhhhhhHhH
Q 001600 155 EIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRK----EKELEASRANVEEKFKALNEEKSNLDLTL 230 (1047)
Q Consensus 155 ~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNqREe~~~e~~~~l~~k----EkeLEeak~kie~~~~~Lk~ke~dl~~rl 230 (1047)
.|..--.+|..-+-+|....--+.-+.. |-++-+++++....++.. ..-|+++.......-.+++.-..+|...-
T Consensus 1519 ~I~e~v~sL~nVd~IL~~T~~di~ra~~-L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~ 1597 (1758)
T KOG0994|consen 1519 EIQERVASLPNVDAILSRTKGDIARAEN-LQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQ 1597 (1758)
T ss_pred HHHHHHHhcccHHHHHHhhhhhHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3444445555555555555444443332 334455555554444332 33466666666666666666666666655
Q ss_pred HHHhhhHHHHHHHH-------HHHHHhHHhHHHHHHHH--hhhhhHHHHHHHHHhHHHhhhhhhhHHHHHHHHhhhHHHH
Q 001600 231 VSLLKREEAVIERE-------ASLQKKEQKLLVSQETL--ASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDE 301 (1047)
Q Consensus 231 ~~l~~rEee~~~~~-------~~Le~KEkeLl~leEKL--~aRE~~EIQKLldeh~a~L~~KK~EFElElE~krKs~eeE 301 (1047)
..|..-.+++...+ ..|...|.-+..|.-+. ++++-..|+++.+--...--.-++.|+ .|....+.++.=
T Consensus 1598 ~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~-~lq~~~~~~~~l 1676 (1758)
T KOG0994|consen 1598 QLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLE-ILQKYYELVDRL 1676 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 55555544444444 33444444444444443 356677888888765554444556666 777777766666
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHhhh----hhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHh
Q 001600 302 IEKKRRAWELRDLDLGQREESLLERE----HDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA 365 (1047)
Q Consensus 302 le~K~~~~E~rEvel~h~Eekl~kRE----qaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~l 365 (1047)
++.|..... .-..+=++|..|- .+-+.++..|++.|-.+.....+|.-+...|--.++++
T Consensus 1677 ~~~r~~g~~----~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~ 1740 (1758)
T KOG0994|consen 1677 LEKRMEGSQ----AARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRV 1740 (1758)
T ss_pred HHHHhhcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH
Confidence 665543221 1111122222221 23345566666666666666566655555555555544
No 70
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=77.78 E-value=58 Score=31.18 Aligned_cols=88 Identities=26% Similarity=0.302 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHH
Q 001600 298 AEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKE 377 (1047)
Q Consensus 298 ~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKE 377 (1047)
++..|..|+.+...++..+..++..|.++++.|....-.+..-=++-+ ....-..+..+.+......--.
T Consensus 12 ~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~----------~k~~rA~k~a~~e~k~~~~k~~ 81 (126)
T PF13863_consen 12 VQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENE----------AKRERAEKRAEEEKKKKEEKEA 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888888888888888888888888888877766654433333 3333334444444444444445
Q ss_pred HHHHHHHHHHHhhhhhHH
Q 001600 378 EVNIIKSDLQKSLSSLDE 395 (1047)
Q Consensus 378 el~~lK~dlEK~ra~~e~ 395 (1047)
+|..+..+|..+.+.+..
T Consensus 82 ei~~l~~~l~~l~~~~~k 99 (126)
T PF13863_consen 82 EIKKLKAELEELKSEISK 99 (126)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666555554443
No 71
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=77.60 E-value=1.9e+02 Score=35.87 Aligned_cols=71 Identities=11% Similarity=0.052 Sum_probs=36.4
Q ss_pred hhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHH--------hhhhHHHhhhhhHHHHHHhHhhhhhhHH
Q 001600 82 ADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSA--------ERKLQEVVAREDDLSRRIASFKADCEEK 152 (1047)
Q Consensus 82 aesKLaEA~aLv~~~eeKs~EaE~KL~aAea~~AEa~Rk~s~a--------eRKL~eVEaRE~~LrRerlSf~aE~ea~ 152 (1047)
.+.|...+..-..-+.+...++..+|.+|++.++.--+++... ..+|.++..+=...+-++....+-....
T Consensus 185 ~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l 263 (754)
T TIGR01005 185 GAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSV 263 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555566666667777777776666655543332 2344444444444444444444333333
No 72
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=76.41 E-value=1.3e+02 Score=36.50 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=43.9
Q ss_pred HhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 001600 339 DKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 408 (1047)
Q Consensus 339 EKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~Lk 408 (1047)
+++++++.+-.-...+|..-....+..+..+.++.....++...+...++-...++.+...+.++++..+
T Consensus 189 ~~dk~~~~rk~m~D~KEreaeea~k~aq~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kqqeak 258 (489)
T PF05262_consen 189 DKDKGIDKRKDMVDIKEREAEEAAKRAQEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQQEAK 258 (489)
T ss_pred ccccChhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4455666655556666666666666666666667666667776666666666666666666555555443
No 73
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=75.12 E-value=99 Score=33.70 Aligned_cols=130 Identities=22% Similarity=0.322 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHh
Q 001600 378 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE 457 (1047)
Q Consensus 378 el~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE 457 (1047)
+|-.|+..+--.++.+.....++......+..- . -|++.|-.+-.-...|++-|+..-..++.|+-
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K---~-----------~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~ 97 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQELQDSLRTK---Q-----------LELEVCENELQRKKNEAELLREKLGQLEAELA 97 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---h-----------HhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHH
Confidence 455555555555555555555555544443221 1 23444444444455555555555555555554
Q ss_pred hhHHHHHHH---HHHHH------HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHH
Q 001600 458 MIDEKREEL---RKEAE------RVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWF 528 (1047)
Q Consensus 458 ~LDEKR~eL---~KEa~------~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelEsL~~ekEsF~~kMehErs~~~ 528 (1047)
.|..--..+ ....- ....++.. -......|+.+-+.+ +.+|-..+..++.|+...++||..|.
T Consensus 98 ~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~----~~~~~~~l~~e~erL----~aeL~~er~~~e~q~~~Fe~ER~~W~ 169 (202)
T PF06818_consen 98 ELREELACAGRLKRQCQLLSESDEAKAQRQA----GEDELGSLRREVERL----RAELQRERQRREEQRSSFEQERRTWQ 169 (202)
T ss_pred HHHHHHHhhccchhhhccccccchhHHhhcc----ccccchhHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 443333332 00000 00000100 011223333333333 34555667788999999999999997
Q ss_pred H
Q 001600 529 T 529 (1047)
Q Consensus 529 e 529 (1047)
+
T Consensus 170 e 170 (202)
T PF06818_consen 170 E 170 (202)
T ss_pred H
Confidence 4
No 74
>PRK12705 hypothetical protein; Provisional
Probab=74.05 E-value=1.6e+02 Score=35.81 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHH
Q 001600 284 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 347 (1047)
Q Consensus 284 K~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~K 347 (1047)
+.++|-|+...|..+... ..-+.+||-.+..+.+.+.+++..|+.+...+..++.++..+
T Consensus 65 ~~~~e~e~~~~~~~~~~~----e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 124 (508)
T PRK12705 65 RNQQRQEARREREELQRE----EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEEL 124 (508)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444332 112444444444444444444444444444444444444443
No 75
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=73.23 E-value=3.4e+02 Score=36.64 Aligned_cols=88 Identities=23% Similarity=0.225 Sum_probs=57.2
Q ss_pred HHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHh
Q 001600 39 AIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEAN 118 (1047)
Q Consensus 39 ALsEaeKREEnLkKALgvEKqCVadLEKAL~Emr~E~AeiK~taesKLaEA~aLv~~~eeKs~EaE~KL~aAea~~AEa~ 118 (1047)
-|++.+.|=.-|.-.+..=..=++.|+..+..+..+.+. |.++.-|..|+..+..+......+...+..|+..++.+-
T Consensus 743 ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~--~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~ 820 (1353)
T TIGR02680 743 RIAELDARLAAVDDELAELARELRALGARQRALADELAG--APSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAA 820 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666666677788888888888776 777777888887777776666666666655555555555
Q ss_pred cchhHHhhhh
Q 001600 119 RYHRSAERKL 128 (1047)
Q Consensus 119 Rk~s~aeRKL 128 (1047)
+....+.+.+
T Consensus 821 ~~~~~a~~~l 830 (1353)
T TIGR02680 821 AAWKQARREL 830 (1353)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 76
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=73.18 E-value=1.2e+02 Score=33.29 Aligned_cols=107 Identities=21% Similarity=0.302 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 001600 377 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEW 456 (1047)
Q Consensus 377 Eel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW 456 (1047)
+.|..+..+..+....+......+..--+++++.++++..|-....++.+++..++.+..-..+|-..|.++
T Consensus 12 ~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e-------- 83 (246)
T PF00769_consen 12 ERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQE-------- 83 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 346677788888888999999999999999999999999888888888888877777666655555555444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 001600 457 EMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ 501 (1047)
Q Consensus 457 E~LDEKR~eL~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~ 501 (1047)
..+++-++..+.+++..-+ .|-.+|+.+-..++..
T Consensus 84 ------~~e~~~~i~~l~ee~~~ke----~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 84 ------LREAEAEIARLEEESERKE----EEAEELQEELEEARED 118 (246)
T ss_dssp ------HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 4444444444444443322 2444555555444443
No 77
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=72.07 E-value=2e+02 Score=33.36 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=12.9
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhhHHHHHHH
Q 001600 504 RDVDSLNREREEFMNKMVHEHSEWFTKIQQ 533 (1047)
Q Consensus 504 relEsL~~ekEsF~~kMehErs~~~eKiq~ 533 (1047)
+.+..|..+|-...+.|++|+.-++.+++.
T Consensus 113 rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k 142 (310)
T PF09755_consen 113 RKLNQLRQEKVELENQLEQEQEYLVNKLQK 142 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334444444444444444444444444333
No 78
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=71.97 E-value=2.8e+02 Score=35.11 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=30.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHH-HHhhhhHHHHhhhhH
Q 001600 291 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRAL-VDKEKDLVERSHLLE 352 (1047)
Q Consensus 291 lE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~l-kEKEkdl~~Ksk~LK 352 (1047)
+-++|+.+|.|++.-++++-.+|-.+..+|..+ ..++.. ++-++|.+.-+.+|-
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~--------~~lr~~~~e~~~~~e~L~~aL~ 597 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL--------QELRKYEKESEKDTEVLMSALS 597 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhhhhhHHHHHHHHH
Confidence 444555666666666666666666666666655 223333 445556665555553
No 79
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=71.46 E-value=2.5e+02 Score=34.45 Aligned_cols=47 Identities=17% Similarity=0.170 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHH
Q 001600 592 ELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKL 638 (1047)
Q Consensus 592 E~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KL 638 (1047)
.+.++.-++..++++..++..+...+.++...++++|+.+...-.++
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666666666666666666666666655544443
No 80
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=70.30 E-value=50 Score=32.96 Aligned_cols=75 Identities=24% Similarity=0.286 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 001600 331 EVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 408 (1047)
Q Consensus 331 e~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~Lk 408 (1047)
.....+|+++-.++..++..+..++..+...-+ .....+...++++..++.-++-.++....+.++...+.++|+
T Consensus 72 ~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~---~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 72 QNDVERLKEQLEELERELASAEEKERQLQKQLK---SLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555555544444 447788889999999999999999999999999888888776
No 81
>PRK09039 hypothetical protein; Validated
Probab=69.71 E-value=2.1e+02 Score=32.85 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=33.3
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Q 001600 399 QVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEK 449 (1047)
Q Consensus 399 qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eK 449 (1047)
++..-...|..++..-.+-..-=.-|+++|+.+|.|.-.|..+.+.++++-
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344666666666666666667778888888888666666666655544
No 82
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=68.98 E-value=3.9e+02 Score=35.56 Aligned_cols=130 Identities=20% Similarity=0.267 Sum_probs=84.0
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHH
Q 001600 63 SLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRI 142 (1047)
Q Consensus 63 dLEKAL~Emr~E~AeiK~taesKLaEA~aLv~~~eeKs~EaE~KL~aAea~~AEa~Rk~s~aeRKL~eVEaRE~~LrRer 142 (1047)
+.++.|.....++.. .+-|++.+..=+.....+.-++..|+-.-+|+.+++.......+..+.+.-+.-++++|+-
T Consensus 278 ~~~~ql~~~~~~i~~----~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~ 353 (1074)
T KOG0250|consen 278 EVERQLNNQEEEIKK----KQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREV 353 (1074)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 344444444444432 2334555555666666666666666666667777777777777888888888888899988
Q ss_pred hHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHH-HHHhhhhhhhhHhhHhhHH
Q 001600 143 ASFKADCEEKEREIIRERQSLSDRKKILQQEHERL-LDAQTLLNEREDHILSKLQ 196 (1047)
Q Consensus 143 lSf~aE~ea~E~~~~~qRe~L~eweKkLqe~eeRL-~e~qrlLNqREe~~~e~~~ 196 (1047)
.-+..+.--.+..|..-+......+|.+-..+.++ -.++.-+-++++.++-..+
T Consensus 354 ~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~ 408 (1074)
T KOG0250|consen 354 NDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKK 408 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 88888777777777777777777777777666666 4444444455444443333
No 83
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=67.11 E-value=1.6e+02 Score=30.42 Aligned_cols=90 Identities=21% Similarity=0.319 Sum_probs=65.8
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001600 402 CAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVS 481 (1047)
Q Consensus 402 ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~le 481 (1047)
+-.+.|+.++.+.+=+---=--|-.+++.....++.+..+++.-+.+-..++.+-+.+...+..|.-|+..+..+|+.|.
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555554443332222335567778888888899999999999999999999999999999999999998888887
Q ss_pred Hhhhhhhhhh
Q 001600 482 KSLKDERDSL 491 (1047)
Q Consensus 482 k~~~~E~erL 491 (1047)
+.+.....++
T Consensus 87 k~lq~~q~kv 96 (140)
T PF10473_consen 87 KELQKKQEKV 96 (140)
T ss_pred HHHHHHHHHH
Confidence 7766544443
No 84
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=66.88 E-value=91 Score=35.36 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=9.4
Q ss_pred HHHHHHHhhHHHHHHH
Q 001600 619 REWAELNNSIEELMVQ 634 (1047)
Q Consensus 619 ~e~aEm~kdIeeL~~l 634 (1047)
-.|.||+-=...+.-|
T Consensus 166 V~W~EINAA~Gq~~LL 181 (314)
T PF04111_consen 166 VEWNEINAAWGQTALL 181 (314)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHH
Confidence 3788888766655443
No 85
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.17 E-value=12 Score=40.00 Aligned_cols=56 Identities=30% Similarity=0.513 Sum_probs=34.7
Q ss_pred HHHHHHHHHhccCCCCccccc---CCCCCCC---CCCCccc---------------------------cccccCCccccc
Q 001600 742 WIKRFADLVFKHSGENSVEND---EEKSPTS---DHEDASL---------------------------TINSRKRQPVRY 788 (1047)
Q Consensus 742 WlrKCTskIFk~SP~Kk~~~~---~e~~~~s---~~~~~~~---------------------------~~~~~k~q~iry 788 (1047)
||++.+.+|=+++-=++...| ++-.|+- .|+|.+. ++...+.||.||
T Consensus 69 wLq~~v~kinnlglF~s~~NHVLVNeY~pgqGImPHtDGPaf~piVstiSlGsh~vldf~~p~r~e~~d~te~~dqp~R~ 148 (224)
T KOG3200|consen 69 WLQYYVDKINNLGLFKSPANHVLVNEYLPGQGIMPHTDGPAFHPIVSTISLGSHTVLDFYDPVRQEVNDGTESKDQPLRY 148 (224)
T ss_pred HHHHHHHHhhcccccCCCcceeEeecccCCCCcCcCCCCCcccceEEEEecCCceEEecccccccccCCccccCCCCccc
Confidence 999999999776654555555 2222222 2343332 224778999999
Q ss_pred ccC---CCeeee
Q 001600 789 SFG---EPKVIL 797 (1047)
Q Consensus 789 a~g---epkvil 797 (1047)
.|. +|++.|
T Consensus 149 ~fsllleprslL 160 (224)
T KOG3200|consen 149 LFSLLLEPRSLL 160 (224)
T ss_pred eeeeeeccceEE
Confidence 998 555433
No 86
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=65.42 E-value=88 Score=35.44 Aligned_cols=68 Identities=28% Similarity=0.373 Sum_probs=18.6
Q ss_pred hhhhhhhhhhhHHHHHHHHH------HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001600 406 KLEAMKSEAGELSVLEIKLK------EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERV 473 (1047)
Q Consensus 406 ~LkitkeER~E~lrLQseLK------eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I 473 (1047)
.+..+..|+..|...-.+|. .+++.+......|.+|...|.++-...|.|=+.|+.-...++.+...+
T Consensus 17 ~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 17 QLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp -------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444443 333333333333444444444444444444444444444444444333
No 87
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=65.42 E-value=2.7e+02 Score=32.35 Aligned_cols=164 Identities=21% Similarity=0.321 Sum_probs=107.8
Q ss_pred HHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 001600 436 LELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVE----RVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNR 511 (1047)
Q Consensus 436 e~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eE----re~lek~~~~E~erLK~Ek~~~r~~~krelEsL~~ 511 (1047)
..|..+-.-||.+-..+-..|-.|-+.-..|+..+-.|.-. =|-++..+..=-+.|+++|..+--.|.++=|.|.-
T Consensus 30 ~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn 109 (310)
T PF09755_consen 30 ESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTN 109 (310)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444445555555544554444444322 23334444444678999999998888888777765
Q ss_pred hHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHhhhhhhHHHH
Q 001600 512 EREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFRER---EKAFEEEKMREFQQISSLKEK 588 (1047)
Q Consensus 512 ekEsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~i~~R~EEiE~~L~ER---Ek~FEeek~~EL~~IN~lkE~ 588 (1047)
.=-.=.+.+.+|+..+-..+.+|...++.-+--+=..|+.++...+.++++-.+++ |.+.|.+-+ +|-..
T Consensus 110 ~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE-------~lvN~ 182 (310)
T PF09755_consen 110 DLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQE-------ALVNR 182 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHH-------HHHHH
Confidence 54555778889999999999999999888888887888888888888888655554 333333332 34455
Q ss_pred HHHHHHHHHHHHHHhHHH
Q 001600 589 AEKELEQVTLEIKRLDLE 606 (1047)
Q Consensus 589 a~kE~Eev~lE~~rLekE 606 (1047)
+-+-|.++..|...|+..
T Consensus 183 L~Kqm~~l~~eKr~Lq~~ 200 (310)
T PF09755_consen 183 LWKQMDKLEAEKRRLQEK 200 (310)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677788888888877765
No 88
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=65.05 E-value=2.8e+02 Score=32.48 Aligned_cols=23 Identities=26% Similarity=0.170 Sum_probs=10.6
Q ss_pred HHhhhhHHHHHhhhhhhHHHHHH
Q 001600 95 NAQKKFAEAEAKLHAAESLQAEA 117 (1047)
Q Consensus 95 ~~eeKs~EaE~KL~aAea~~AEa 117 (1047)
-++....+++.+|..|+..+..-
T Consensus 165 fl~~ql~~~~~~L~~ae~~l~~f 187 (498)
T TIGR03007 165 FIDEQIKTYEKKLEAAENRLKAF 187 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555444443
No 89
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=62.47 E-value=1.8e+02 Score=31.98 Aligned_cols=96 Identities=19% Similarity=0.288 Sum_probs=61.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHH---HhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-
Q 001600 407 LEAMKSEAGELSVLEIKLKEELDVVRAQKL---ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSK- 482 (1047)
Q Consensus 407 LkitkeER~E~lrLQseLKeEId~~R~Qke---~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek- 482 (1047)
++-...=+.+|-.+-..|.++++.++.... ++.+|.+.|-+||..+..|--.|..=.-.|+...+....+|.+...
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~ 82 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEK 82 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566777777888888777776543 4456777777777777777777777666666666666655554332
Q ss_pred --hhhhhhhhhHHHHHHHHHHH
Q 001600 483 --SLKDERDSLRQERDAMRDQH 502 (1047)
Q Consensus 483 --~~~~E~erLK~Ek~~~r~~~ 502 (1047)
.++.|...||.+-+.||..|
T Consensus 83 i~r~~eey~~Lk~~in~~R~e~ 104 (230)
T PF10146_consen 83 IQRLYEEYKPLKDEINELRKEY 104 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 23346666666666666553
No 90
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=61.79 E-value=2e+02 Score=31.72 Aligned_cols=123 Identities=20% Similarity=0.209 Sum_probs=54.7
Q ss_pred HhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHH
Q 001600 96 AQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHE 175 (1047)
Q Consensus 96 ~eeKs~EaE~KL~aAea~~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~aE~ea~E~~~~~qRe~L~eweKkLqe~ee 175 (1047)
|+.+..+.+.+|...+.....+.........+...++..-..++.++..+...+...+..+..-+..-..-.+--.....
T Consensus 3 aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~ 82 (246)
T PF00769_consen 3 AEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQ 82 (246)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666555555555555555555544444444444444433333333222222221111222222333
Q ss_pred HHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHH
Q 001600 176 RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKA 218 (1047)
Q Consensus 176 RL~e~qrlLNqREe~~~e~~~~l~~kEkeLEeak~kie~~~~~ 218 (1047)
.+.+.+..+.+-.+-...++.....++.+|..++.....+...
T Consensus 83 e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~ 125 (246)
T PF00769_consen 83 ELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEE 125 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444445555556666666666666555444333
No 91
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=61.35 E-value=2.3e+02 Score=34.45 Aligned_cols=108 Identities=20% Similarity=0.237 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhh
Q 001600 426 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRD 505 (1047)
Q Consensus 426 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~kre 505 (1047)
.+++..|+.-+++..|++.|+++--.-+++=..+.-|-.+++--+++...|...+. .+...|....+.-+..++..
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~----E~n~~l~knq~vw~~kl~~~ 422 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER----EENKKLIKNQDVWRGKLKEL 422 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHH
Confidence 58899999999999999999998888888888887777777777777777665544 45556666666666666666
Q ss_pred hhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHH
Q 001600 506 VDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKR 556 (1047)
Q Consensus 506 lEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~i~~R 556 (1047)
-+.++.+.-+.-. ++.|++-|=|+|=.-|...
T Consensus 423 ~e~~~~~~~s~d~-------------------~I~dLqEQlrDlmf~le~q 454 (493)
T KOG0804|consen 423 EEREKEALGSKDE-------------------KITDLQEQLRDLMFFLEAQ 454 (493)
T ss_pred HHHHHHHHHHHHH-------------------HHHHHHHHHHhHheehhhh
Confidence 5555544443332 2336666666665544443
No 92
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=60.87 E-value=5.7e+02 Score=34.66 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=27.1
Q ss_pred CCCCCccccccccCCCCCCCcccceeeeeeeeeeeceee
Q 001600 898 SNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTC 936 (1047)
Q Consensus 898 ~~~~~~~~~~~s~nqtqg~~ee~~~~~~d~ii~isevtc 936 (1047)
-.|+++-+...+..+-.++ .-.=+|-|++.|||-.||-
T Consensus 1127 V~~s~~~~l~~~~~~~k~~-~~~~il~i~k~~~v~~vt~ 1164 (1317)
T KOG0612|consen 1127 VIVSSKKILFYVSEQDKEQ-SGPLILDIKKLFHVRQVTQ 1164 (1317)
T ss_pred EeecccceEeeeccccccc-cchhhhhhhhceeEEeecc
Confidence 3566777777777777773 2234667889999999974
No 93
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=60.46 E-value=2.8e+02 Score=32.13 Aligned_cols=121 Identities=20% Similarity=0.292 Sum_probs=99.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHH
Q 001600 382 IKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDE 461 (1047)
Q Consensus 382 lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDE 461 (1047)
|-..|+.-...|.+---+++.+.-+|..-..++.|+.+ ....+=|+.+++|..+|+..++ .+|+++++.|.-
T Consensus 4 mtq~LqeQ~~~F~aahaqm~sav~qL~~~r~~teelIr--~rVrq~V~hVqaqEreLLe~v~------~rYqR~y~ema~ 75 (324)
T PF12126_consen 4 MTQALQEQDGAFGAAHAQMRSAVSQLGRARADTEELIR--ARVRQVVAHVQAQERELLEAVE------ARYQRDYEEMAG 75 (324)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 44455666667777778899999999999999999998 4567889999999999997665 578899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhH
Q 001600 462 KREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNRER 513 (1047)
Q Consensus 462 KR~eL~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelEsL~~ek 513 (1047)
+--.|..=+.+|..==.-++++++.-.| +|-.+|...+..-|+.|+.++
T Consensus 76 ~L~~LeavLqRir~G~~LVekM~~YASD---QEVLdMh~FlreAL~rLrqee 124 (324)
T PF12126_consen 76 QLGRLEAVLQRIRTGGALVEKMKLYASD---QEVLDMHGFLREALERLRQEE 124 (324)
T ss_pred HHhHHHHHHHHHHhHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999998777777887776655 678888888888888887653
No 94
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=60.41 E-value=5.5e+02 Score=34.28 Aligned_cols=131 Identities=21% Similarity=0.156 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001600 330 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLL-------QKEKEEVNIIKSDLQKSLSSLDEKKKQVNC 402 (1047)
Q Consensus 330 Le~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L-------~~eKEel~~lK~dlEK~ra~~e~q~~qi~e 402 (1047)
|.++.+-|.+.=.++.-..-.|...+|.|.-+.+++..+.... ..+.+.+..+-.......+..++-.-+|..
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ikn 492 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKN 492 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444443332222 224445555555555556666666666666
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhH
Q 001600 403 AKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMID 460 (1047)
Q Consensus 403 e~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LD 460 (1047)
....|.-..-|.+-+.-+-.+||+.+-+|=-|-..+..=++.|.+.+-..|.|-..|=
T Consensus 493 lnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~Ll 550 (1195)
T KOG4643|consen 493 LNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLL 550 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6666666666666666667889999999999999999999999999999888877664
No 95
>PRK04863 mukB cell division protein MukB; Provisional
Probab=59.92 E-value=6.3e+02 Score=34.86 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=26.1
Q ss_pred cchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHH
Q 001600 119 RYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRK 167 (1047)
Q Consensus 119 Rk~s~aeRKL~eVEaRE~~LrRerlSf~aE~ea~E~~~~~qRe~L~ewe 167 (1047)
.+..++.++|..++.+-..+.... .|.+.....+..+.+.+..|.
T Consensus 293 ~rk~eA~kkLe~tE~nL~rI~diL----~ELe~rL~kLEkQaEkA~kyl 337 (1486)
T PRK04863 293 RELYTSRRQLAAEQYRLVEMAREL----AELNEAESDLEQDYQAASDHL 337 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777666665544 344444455555555555553
No 96
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=57.71 E-value=3.4e+02 Score=31.00 Aligned_cols=66 Identities=26% Similarity=0.396 Sum_probs=44.7
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhh--------------hhhhhHHHHHHHhhHHHHHHHHHHHHHHH
Q 001600 577 REFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMD--------------RQRRDREWAELNNSIEELMVQRQKLEEQR 642 (1047)
Q Consensus 577 ~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~--------------ke~le~e~aEm~kdIeeL~~ls~KLk~QR 642 (1047)
.-|++=|.+=.....||+.|.--+.+|++|....-.- +..++.+..-+.+-|+.|..|-+-|+.+|
T Consensus 230 ~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~er 309 (309)
T PF09728_consen 230 DTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAER 309 (309)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4577788888999999999999999999998765443 44444444444444444544444444443
No 97
>PLN03188 kinesin-12 family protein; Provisional
Probab=56.78 E-value=4.8e+02 Score=35.43 Aligned_cols=151 Identities=25% Similarity=0.299 Sum_probs=86.9
Q ss_pred HhhHhhhhhhhhHHHHHHhHHHHHHH-HH------hhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHH
Q 001600 45 KREESLKKTLGVEKECIASLEKAVHE-IR------AESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEA 117 (1047)
Q Consensus 45 KREEnLkKALgvEKqCVadLEKAL~E-mr------~E~AeiK~taesKLaEA~aLv~~~eeKs~EaE~KL~aAea~~AEa 117 (1047)
-+-|.|+--|..||.|...|.-||+- |. .-||+.-=..-.=|+--+.++++|. |-|..||.|
T Consensus 1079 ~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~------dvkkaaaka----- 1147 (1320)
T PLN03188 1079 ALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGID------DVKKAAARA----- 1147 (1320)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHh-----
Confidence 45578999999999999999999973 32 2333322111112222233333332 223333322
Q ss_pred hcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHH-----H---------HHHHHHhhh
Q 001600 118 NRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQE-----H---------ERLLDAQTL 183 (1047)
Q Consensus 118 ~Rk~s~aeRKL~eVEaRE~~LrRerlSf~aE~ea~E~~~~~qRe~L~eweKkLqe~-----e---------eRL~e~qrl 183 (1047)
.+|.. + -|=+.+|-+|.-+...+-.++|..|++=-|.||.- + =||-++..-
T Consensus 1148 g~kg~------------~---~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea 1212 (1320)
T PLN03188 1148 GVRGA------------E---SKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEA 1212 (1320)
T ss_pred ccccc------------h---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 1 23344555555555556666677776666666532 1 244444444
Q ss_pred hhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhh
Q 001600 184 LNEREDHILSKLQELSRKEKELEASRANVEEKFKALNE 221 (1047)
Q Consensus 184 LNqREe~~~e~~~~l~~kEkeLEeak~kie~~~~~Lk~ 221 (1047)
+.-=+++++.-.++-...-|.++.+++|-+.+..+|+.
T Consensus 1213 ~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q 1250 (1320)
T PLN03188 1213 LTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQ 1250 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556777777777777778888888888888777776
No 98
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=56.69 E-value=4.3e+02 Score=31.89 Aligned_cols=78 Identities=18% Similarity=0.219 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q 001600 375 EKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEA 454 (1047)
Q Consensus 375 eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~ 454 (1047)
+...|...+..|+--++.+....-.....+.+|..+..|+.. +..+|-.+|..-+...++|-+.+..|+.+.++-|.
T Consensus 169 ~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk---~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~ 245 (420)
T COG4942 169 TLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKK---TLAQLNSELSADQKKLEELRANESRLKNEIASAEA 245 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333333444444444444444444455555666666655544 44677777777788888888888888888877665
Q ss_pred H
Q 001600 455 E 455 (1047)
Q Consensus 455 E 455 (1047)
+
T Consensus 246 ~ 246 (420)
T COG4942 246 A 246 (420)
T ss_pred H
Confidence 4
No 99
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=56.01 E-value=73 Score=35.50 Aligned_cols=82 Identities=26% Similarity=0.365 Sum_probs=66.4
Q ss_pred hhHHHHH-----HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001600 415 GELSVLE-----IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD 489 (1047)
Q Consensus 415 ~E~lrLQ-----seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~e 489 (1047)
.=+-+|| |.||+-.+.||-.-+++.+|-+.|..+-+..+.|++.+.+.-..|+.|.-.+.+.+.++. .|-.
T Consensus 119 AGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~----~ev~ 194 (290)
T COG4026 119 AGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP----GEVY 194 (290)
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch----hHHH
Confidence 3445566 899999999999999999999999999999999999999999999999988887765543 4566
Q ss_pred hhHHHHHHHHH
Q 001600 490 SLRQERDAMRD 500 (1047)
Q Consensus 490 rLK~Ek~~~r~ 500 (1047)
+|+..-+.+.+
T Consensus 195 ~L~~r~~ELe~ 205 (290)
T COG4026 195 DLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHhcc
Confidence 67766555543
No 100
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=54.98 E-value=5.1e+02 Score=32.24 Aligned_cols=57 Identities=25% Similarity=0.384 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhH
Q 001600 552 CIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDR 619 (1047)
Q Consensus 552 ~i~~R~EEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~ 619 (1047)
.+.++.+.++..|.+=-+.|+..=..- ..+|..|.-|+..|-.|.+.+--.+.-|+-
T Consensus 321 ~L~~~I~dL~~ql~e~~r~~e~~L~~k-----------d~~i~~mReec~~l~~Elq~LlD~ki~Ld~ 377 (546)
T KOG0977|consen 321 ALEKRIEDLEYQLDEDQRSFEQALNDK-----------DAEIAKMREECQQLSVELQKLLDTKISLDA 377 (546)
T ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhhH-----------HHHHHHHHHHHHHHHHHHHHhhchHhHHHh
Confidence 455677788888888888888643221 234555555666666655555555555554
No 101
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=54.47 E-value=3.5e+02 Score=30.25 Aligned_cols=91 Identities=24% Similarity=0.306 Sum_probs=58.9
Q ss_pred hHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 001600 438 LMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFM 517 (1047)
Q Consensus 438 LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelEsL~~ekEsF~ 517 (1047)
|.-|.+-++......+.|-..|++.++.|++++....+.-.++++-+...+.++..+-..++. +...+..+++...
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e----~~~~~~~~~~~L~ 169 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE----EGQELSSKREELK 169 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 344444455555555555556666666666666666666666666666666666666655543 4567778888888
Q ss_pred HhhhhhhhhHHHHHH
Q 001600 518 NKMVHEHSEWFTKIQ 532 (1047)
Q Consensus 518 ~kMehErs~~~eKiq 532 (1047)
.+|.-+=...++++-
T Consensus 170 ~~l~~ell~~yeri~ 184 (239)
T COG1579 170 EKLDPELLSEYERIR 184 (239)
T ss_pred HhcCHHHHHHHHHHH
Confidence 888876666666553
No 102
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=52.09 E-value=4.3e+02 Score=30.53 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q 001600 550 ENCIEKRREELESSFREREKAFEE 573 (1047)
Q Consensus 550 E~~i~~R~EEiE~~L~EREk~FEe 573 (1047)
|..+-.+..+++..|..+.++.+.
T Consensus 133 E~~lvq~I~~L~k~le~~~k~~e~ 156 (294)
T COG1340 133 ERELVQKIKELRKELEDAKKALEE 156 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666677777776665543
No 103
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=49.49 E-value=6.9e+02 Score=32.15 Aligned_cols=309 Identities=16% Similarity=0.231 Sum_probs=142.3
Q ss_pred hhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhH-------hHHHHHHHhhcHHHHHH
Q 001600 145 FKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSR-------KEKELEASRANVEEKFK 217 (1047)
Q Consensus 145 f~aE~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNqREe~~~e~~~~l~~-------kEkeLEeak~kie~~~~ 217 (1047)
+..|+-.+|++++.=---+.+-+-++++..--|.+.|.-+||=++..+.-...|+. +..+|+.++..+..+-.
T Consensus 231 y~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~ 310 (786)
T PF05483_consen 231 YKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESES 310 (786)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666554443444444444444444555555555555544444444444 44455555554444333
Q ss_pred HHhhhhhhhhHhHHHHhh----hHHHHHHHHHHHHHhHHhHHHHHHHHhhhh---hHHHHHHHHHhHHHhhhhhhhHHHH
Q 001600 218 ALNEEKSNLDLTLVSLLK----REEAVIEREASLQKKEQKLLVSQETLASKE---SNEIQKIIANHESALRVKQSEFEAE 290 (1047)
Q Consensus 218 ~Lk~ke~dl~~rl~~l~~----rEee~~~~~~~Le~KEkeLl~leEKL~aRE---~~EIQKLldeh~a~L~~KK~EFElE 290 (1047)
+-+.-+.++......+.. +|-.+.............+..|+-+++.=. ..|+|.+-. ++....-+=+|
T Consensus 311 tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~-----~ed~lk~l~~e 385 (786)
T PF05483_consen 311 TQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKK-----NEDQLKILTME 385 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHH
Confidence 333333344333333221 111222222233333344445555544322 244444432 22222333455
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhh------hhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHH
Q 001600 291 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLERE------HDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKE 364 (1047)
Q Consensus 291 lE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kRE------qaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~ 364 (1047)
|..+-..+++..+.+.. +|+++...-.-|++.. ..+++-.+.|+..+.+|... |.-+++.+.-.+-.
T Consensus 386 Lqkks~eleEmtk~k~~----ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~l---lq~~ekev~dLe~~ 458 (786)
T PF05483_consen 386 LQKKSSELEEMTKQKNN----KEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGL---LQIREKEVHDLEIQ 458 (786)
T ss_pred HHHhhHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHH
Confidence 55555555555544432 2333322222222222 33555555555666655544 33334444444333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh-------hhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001600 365 ADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE-------AMKSEAGELSVLEIKLKEELDVVRAQKLE 437 (1047)
Q Consensus 365 le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~Lk-------itkeER~E~lrLQseLKeEId~~R~Qke~ 437 (1047)
| -...+.=+.+-..++..+..++.+..+-.+-..+.. .+.-+++...-==.++.+-|...+.|.+-
T Consensus 459 l-------~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~ 531 (786)
T PF05483_consen 459 L-------TTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEK 531 (786)
T ss_pred H-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3 333333333333334444444433322222211111 11122222222223567788888999999
Q ss_pred hHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001600 438 LMVETDKLQLEKAKFEAEWEMIDEKREELRKEAER 472 (1047)
Q Consensus 438 LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~ 472 (1047)
++++++.|......+-.|.+.+-+.-+.-.-|.++
T Consensus 532 ~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~ 566 (786)
T PF05483_consen 532 MLKQIENLEETNTQLRNELESVKEELKQKGEEVKC 566 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888887777777766655554445444
No 104
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=49.11 E-value=3.6e+02 Score=28.82 Aligned_cols=91 Identities=23% Similarity=0.324 Sum_probs=52.9
Q ss_pred hhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh
Q 001600 184 LNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLAS 263 (1047)
Q Consensus 184 LNqREe~~~e~~~~l~~kEkeLEeak~kie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkeLl~leEKL~a 263 (1047)
+.+...++......+....+.++..+..++.-+..|......+...........+.+......+......+..++..+..
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 144 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLAR 144 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555555555555555555555555333333444455566666777777777777777777
Q ss_pred hhhHHHHHHHH
Q 001600 264 KESNEIQKIIA 274 (1047)
Q Consensus 264 RE~~EIQKLld 274 (1047)
+-+.-++.|..
T Consensus 145 ~r~~l~~~l~~ 155 (302)
T PF10186_consen 145 RRRQLIQELSE 155 (302)
T ss_pred HHHHHHHHHHH
Confidence 77766666544
No 105
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=47.98 E-value=1.9e+02 Score=36.29 Aligned_cols=73 Identities=22% Similarity=0.271 Sum_probs=50.3
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001600 400 VNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVE 476 (1047)
Q Consensus 400 i~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eE 476 (1047)
+..-...++-.+.|-++|.+.=.+||.+|++++.+-..+-.+++ .+.+-.+|-+.+|..-..|++++..=...
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~~~~~~I~~L~~~L~e~~~~ 496 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR----DKVRKDREIRARDRRIERLEKELEEKKKR 496 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455556666677777777888888888888888877776 45556677777888878787776654333
No 106
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=45.84 E-value=4.5e+02 Score=33.56 Aligned_cols=105 Identities=16% Similarity=0.162 Sum_probs=57.7
Q ss_pred hhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHH
Q 001600 190 HILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEI 269 (1047)
Q Consensus 190 ~~~e~~~~l~~kEkeLEeak~kie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkeLl~leEKL~aRE~~EI 269 (1047)
++++..+.+-.=..-++.|+..+......+.+--.+|...-..+-.+..++......++....+|....++|..+....+
T Consensus 489 ~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~ 568 (782)
T PRK00409 489 NAFEIAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLL 568 (782)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555554444433333333444433444444445555555666666666666666666666777
Q ss_pred HHHHHHhHHHhhhhhhhHHHHHHHH
Q 001600 270 QKIIANHESALRVKQSEFEAELAIK 294 (1047)
Q Consensus 270 QKLldeh~a~L~~KK~EFElElE~k 294 (1047)
+++..+.+.+|..-+.+.+.=+...
T Consensus 569 ~~~~~~a~~~l~~a~~~~~~~i~~l 593 (782)
T PRK00409 569 EEAEKEAQQAIKEAKKEADEIIKEL 593 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776666666665554444333
No 107
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=44.61 E-value=2.1e+02 Score=26.34 Aligned_cols=67 Identities=28% Similarity=0.395 Sum_probs=50.2
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHH
Q 001600 386 LQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEK 462 (1047)
Q Consensus 386 lEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEK 462 (1047)
+++..++=.++..++-++=++|-.++ .++-.-|.++|.+-..+.+.+..|+...+..+.+-+.|-.+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~e----------l~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKE----------LKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666665554 88888999999999999999999998888888887766543
No 108
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=43.80 E-value=3.3e+02 Score=34.71 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=20.1
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001600 358 LIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNC 402 (1047)
Q Consensus 358 LkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~e 402 (1047)
+...=..|+.++..++..++++..+..++++.+..++.++.++.+
T Consensus 518 ~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~ 562 (782)
T PRK00409 518 LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQE 562 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444444433
No 109
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=42.91 E-value=3.8e+02 Score=28.52 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhH
Q 001600 380 NIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGEL 417 (1047)
Q Consensus 380 ~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~ 417 (1047)
..++..+.++...++.-...|...+..+..++..|.+-
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~ 102 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES 102 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34444555555555555555555555555555555443
No 110
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=42.05 E-value=3.6e+02 Score=26.80 Aligned_cols=99 Identities=26% Similarity=0.278 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 001600 377 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEW 456 (1047)
Q Consensus 377 Eel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW 456 (1047)
..+..+...+...+..+..+-.....++++.+.-=---.+-..-=..||.+...++.+...|-.+++..+.....-+.-|
T Consensus 17 ~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw 96 (132)
T PF07926_consen 17 EQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASW 96 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444555666666666666666677766644211111111222256777777888888888888888877777777777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 001600 457 EMIDEKREELRKEAERVAVERV 478 (1047)
Q Consensus 457 E~LDEKR~eL~KEa~~I~eEre 478 (1047)
+ +-+..|.++...+..-..
T Consensus 97 ~---~qk~~le~e~~~~~~r~~ 115 (132)
T PF07926_consen 97 E---EQKEQLEKELSELEQRIE 115 (132)
T ss_pred H---HHHHHHHHHHHHHHHHHH
Confidence 5 345555555555444333
No 111
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=41.69 E-value=4e+02 Score=27.15 Aligned_cols=37 Identities=27% Similarity=0.188 Sum_probs=30.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 001600 406 KLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVET 442 (1047)
Q Consensus 406 ~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEa 442 (1047)
.++.++.|-.+|++|=..|-.-|.+||..-..|=-++
T Consensus 78 ~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eV 114 (136)
T PF04871_consen 78 ARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEV 114 (136)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCc
Confidence 4467888999999999999999999998877665444
No 112
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=41.63 E-value=84 Score=34.23 Aligned_cols=49 Identities=33% Similarity=0.445 Sum_probs=30.0
Q ss_pred hhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001600 610 INMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESER 658 (1047)
Q Consensus 610 i~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~f~~~vE~ 658 (1047)
+..+.+.|..+|.++++....|..-.++|.+-|.+|-+||+.|...+.+
T Consensus 36 ~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e 84 (228)
T PRK06800 36 IQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQ 84 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666666666666555544
No 113
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=40.24 E-value=5.7e+02 Score=28.60 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=21.3
Q ss_pred hhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhh
Q 001600 134 REDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQT 182 (1047)
Q Consensus 134 RE~~LrRerlSf~aE~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qr 182 (1047)
+...+..+...|.++...++..+..-+..+..++..+...+..+...+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~ 179 (423)
T TIGR01843 131 QQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISE 179 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444433333
No 114
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=40.24 E-value=7.6e+02 Score=30.02 Aligned_cols=111 Identities=21% Similarity=0.189 Sum_probs=60.7
Q ss_pred HHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHh
Q 001600 141 RIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALN 220 (1047)
Q Consensus 141 erlSf~aE~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNqREe~~~e~~~~l~~kEkeLEeak~kie~~~~~Lk 220 (1047)
+..+-.++..+-..++.+-|..|..---.--....+..+.... +..+...+..+-.+|..++.-++..+.+-.
T Consensus 124 q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~-------a~~~~~kve~L~~Ei~~lke~l~~~~~a~~ 196 (522)
T PF05701_consen 124 QYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSA-------AEENEEKVEELSKEIIALKESLESAKLAHI 196 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555544433211111112222222222 234555666666677777766666655433
Q ss_pred hhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHH
Q 001600 221 EEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETL 261 (1047)
Q Consensus 221 ~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkeLl~leEKL 261 (1047)
+-+ ..++..+..++.....++..|...+.+|..|...+
T Consensus 197 eAe---ee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 197 EAE---EERIEIAAEREQDAEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 34555556677777788888888888888877776
No 115
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=39.54 E-value=3.1e+02 Score=27.98 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 001600 377 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 408 (1047)
Q Consensus 377 Eel~~lK~dlEK~ra~~e~q~~qi~ee~E~Lk 408 (1047)
+++..|..+|..++..+..-...+......|.
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333333333333
No 116
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=39.52 E-value=3.2e+02 Score=36.14 Aligned_cols=8 Identities=50% Similarity=0.783 Sum_probs=3.0
Q ss_pred hhHHhhcc
Q 001600 993 MVQEKQMG 1000 (1047)
Q Consensus 993 ~~~e~~~~ 1000 (1047)
|+-|+-+|
T Consensus 918 ~~~~~~~~ 925 (1021)
T PTZ00266 918 MLMEKEKG 925 (1021)
T ss_pred HHHHHhhh
Confidence 33333333
No 117
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=39.11 E-value=4.9e+02 Score=27.70 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHH
Q 001600 424 LKEELDVVRAQKLELMVETDKLQLEKA 450 (1047)
Q Consensus 424 LKeEId~~R~Qke~LlkEae~Lk~eKe 450 (1047)
|+.+|+.++.....|....+.++..|.
T Consensus 74 l~~~~~~~~~~i~~l~~~i~~~~~~r~ 100 (188)
T PF03962_consen 74 LQKEIEELEKKIEELEEKIEEAKKGRE 100 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344444444444444444444444333
No 118
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=38.43 E-value=3.2e+02 Score=28.64 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhh
Q 001600 150 EEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNL 226 (1047)
Q Consensus 150 ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNqREe~~~e~~~~l~~kEkeLEeak~kie~~~~~Lk~ke~dl 226 (1047)
.+.+..+...|++|.+-.|.--+...+|.....-|...+..+.+....+..++.++...+.+|..-...|+++...+
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888888888888888888888888888888888888888888888777777666655555555444433
No 119
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=38.33 E-value=5.5e+02 Score=27.84 Aligned_cols=111 Identities=22% Similarity=0.370 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHhhhhhhHHHHHHHH
Q 001600 515 EFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKM--REFQQISSLKEKAEKE 592 (1047)
Q Consensus 515 sF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~i~~R~EEiE~~L~EREk~FEeek~--~EL~~IN~lkE~a~kE 592 (1047)
+|+.+=.+++..-..++...-.+-...|+-.|.+|......+..+++..|-++++.+-.-+. ..|..|..+++.-.+|
T Consensus 7 ~yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~e 86 (206)
T PF14988_consen 7 EYLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQERE 86 (206)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHH--------hhhhhhhhhHHHHHHH
Q 001600 593 LEQVTLEIKRLDLERME--------INMDRQRRDREWAELN 625 (1047)
Q Consensus 593 ~Eev~lE~~rLekER~E--------i~~~ke~le~e~aEm~ 625 (1047)
|..+.-++.++..+-.+ .-..|.+++.+..+++
T Consensus 87 I~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~ 127 (206)
T PF14988_consen 87 IQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELK 127 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 120
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=37.51 E-value=5.7e+02 Score=27.77 Aligned_cols=70 Identities=17% Similarity=0.273 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhHHh-------hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 001600 422 IKLKEELDVVRAQKLELMVE-------TDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSL 491 (1047)
Q Consensus 422 seLKeEId~~R~Qke~LlkE-------ae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~erL 491 (1047)
.+.-+.|+.+-.++..|..+ .+.|+......++-=..+....+.|+.....|..-+..+.-++..-.+.|
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444 44444444444444444445555555555555555555555544444333
No 121
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=36.74 E-value=1.2e+02 Score=30.15 Aligned_cols=44 Identities=32% Similarity=0.496 Sum_probs=27.2
Q ss_pred HHhHHHHHHHHHhhhhhhhhhhh--hhhhHHHHHHHHHhhhhHHHH
Q 001600 61 IASLEKAVHEIRAESAETKVAAD--SKFAEARCMVENAQKKFAEAE 104 (1047)
Q Consensus 61 VadLEKAL~Emr~E~AeiK~tae--sKLaEA~aLv~~~eeKs~EaE 104 (1047)
|+-|++||.++++.|.....-++ .|+.+...=|...+.-+.++-
T Consensus 45 v~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~ 90 (115)
T PF06476_consen 45 VAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQ 90 (115)
T ss_pred HHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67799999999999987664433 344444444444444443333
No 122
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=36.28 E-value=8.7e+02 Score=29.87 Aligned_cols=75 Identities=19% Similarity=0.196 Sum_probs=45.0
Q ss_pred HHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001600 323 LLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQV 400 (1047)
Q Consensus 323 l~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi 400 (1047)
+..+.+.++.++-.+..|-+.+...++.++|-.+.|.... ..-+.+|.+..+.........+.....|++|++.|
T Consensus 373 ~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq---~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 373 LEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQ---DVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3456677777888888888888888888887777776433 22244444444444444444444455555555543
No 123
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=35.85 E-value=6.8e+02 Score=28.16 Aligned_cols=111 Identities=16% Similarity=0.210 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 001600 426 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAV-ERVVVSKSLKDERDSLRQERDAMRDQHKR 504 (1047)
Q Consensus 426 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~e-Ere~lek~~~~E~erLK~Ek~~~r~~~kr 504 (1047)
+||+++-.|-.++.+....+......||++=+.|--+-++-++...+.+. .+-.|-..++.+-++++.+ +....+.+
T Consensus 43 ee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~td--e~k~~~~~ 120 (230)
T PF03904_consen 43 EEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTD--ELKNIAQN 120 (230)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH--HHHHHHHH
Confidence 58999999999999999999999999999999888888887777776654 3556777777788877555 56666666
Q ss_pred hhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhh
Q 001600 505 DVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGI 542 (1047)
Q Consensus 505 elEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~ 542 (1047)
+.-.++ .+-..|-+|.-.--++-++--..|..+|
T Consensus 121 ei~k~r----~e~~~ml~evK~~~E~y~k~~k~~~~gi 154 (230)
T PF03904_consen 121 EIKKVR----EENKSMLQEVKQSHEKYQKRQKSMYKGI 154 (230)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 655554 4555666665555556666555555554
No 124
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=35.44 E-value=5.3e+02 Score=26.78 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHH
Q 001600 166 RKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREA 245 (1047)
Q Consensus 166 weKkLqe~eeRL~e~qrlLNqREe~~~e~~~~l~~kEkeLEeak~kie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~ 245 (1047)
|+++.....+-|-..++--.-=+.||..-.+.|...+..++.+-.-.+-+...+..-+..|......+..=+-+++.+.+
T Consensus 1 de~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 1 DEEKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred CcHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777877777666667788888888888888888888777777777777777777777777777888888888
Q ss_pred HHHHhHHhHHHHHHHHhhhh
Q 001600 246 SLQKKEQKLLVSQETLASKE 265 (1047)
Q Consensus 246 ~Le~KEkeLl~leEKL~aRE 265 (1047)
.-+.-.++|-..++++..=|
T Consensus 81 Ek~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 81 EKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888776544
No 125
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=35.36 E-value=6.4e+02 Score=27.70 Aligned_cols=167 Identities=20% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHH---HHHHhhhhHHHHHhhhhh---hHHHHHHhcchhHHhhhhHHHhh
Q 001600 60 CIASLEKAVHEIRAESAETKVAADSKFAEARCM---VENAQKKFAEAEAKLHAA---ESLQAEANRYHRSAERKLQEVVA 133 (1047)
Q Consensus 60 CVadLEKAL~Emr~E~AeiK~taesKLaEA~aL---v~~~eeKs~EaE~KL~aA---ea~~AEa~Rk~s~aeRKL~eVEa 133 (1047)
||.||+-.=+.++.|++..+-+-+.=-.-...| +.++.....-.=-=++-| +--+....--...++-...-+-|
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~a 88 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLA 88 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHhHhhhhhhHHHHH---HHHHHhchHHHHHHHHHH----HHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHH
Q 001600 134 REDDLSRRIASFKADCEEKERE---IIRERQSLSDRKKILQQE----HERLLDAQTLLNEREDHILSKLQELSRKEKELE 206 (1047)
Q Consensus 134 RE~~LrRerlSf~aE~ea~E~~---~~~qRe~L~eweKkLqe~----eeRL~e~qrlLNqREe~~~e~~~~l~~kEkeLE 206 (1047)
+-..|-++--++.++.+.+..+ +.-+++-|...-+-|..+ +--++....++++|+.-++++.+-...+..-++
T Consensus 89 q~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ie 168 (193)
T PF14662_consen 89 QARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIE 168 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred HHhhcHHHHHHHHhhhhhhh
Q 001600 207 ASRANVEEKFKALNEEKSNL 226 (1047)
Q Consensus 207 eak~kie~~~~~Lk~ke~dl 226 (1047)
+....++.-+...-.-+..+
T Consensus 169 Ey~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 169 EYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 126
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=34.35 E-value=8.5e+02 Score=31.21 Aligned_cols=101 Identities=17% Similarity=0.123 Sum_probs=57.2
Q ss_pred HhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHH
Q 001600 189 DHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNE 268 (1047)
Q Consensus 189 e~~~e~~~~l~~kEkeLEeak~kie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkeLl~leEKL~aRE~~E 268 (1047)
.++++..+.+-.-..-++.|+..+......+.+--.+|......+-.+..++......++...++|....++|..+....
T Consensus 483 S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~ 562 (771)
T TIGR01069 483 SYAFEIAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNK 562 (771)
T ss_pred cHHHHHHHHhCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666555544444444444444444444455555555566666666666666666666666
Q ss_pred HHHHHHHhHHHhhhhhhhHHH
Q 001600 269 IQKIIANHESALRVKQSEFEA 289 (1047)
Q Consensus 269 IQKLldeh~a~L~~KK~EFEl 289 (1047)
++++-.+.+.++..-+.+.+.
T Consensus 563 ~~~a~~ea~~~~~~a~~~~~~ 583 (771)
T TIGR01069 563 KLELEKEAQEALKALKKEVES 583 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666655555554444333
No 127
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=34.28 E-value=1e+03 Score=29.74 Aligned_cols=51 Identities=24% Similarity=0.186 Sum_probs=23.9
Q ss_pred HhHHHHHHHHHhhhhhhhhh----hhhhhhHHHHHHHHHhhhhHHHHHhhhhhhH
Q 001600 62 ASLEKAVHEIRAESAETKVA----ADSKFAEARCMVENAQKKFAEAEAKLHAAES 112 (1047)
Q Consensus 62 adLEKAL~Emr~E~AeiK~t----aesKLaEA~aLv~~~eeKs~EaE~KL~aAea 112 (1047)
...|.+|...+.++.-+-.. ++.+|++.+.-...++-....+++.+.....
T Consensus 211 ~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~ 265 (754)
T TIGR01005 211 RDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKK 265 (754)
T ss_pred HHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777777766554321 1234444444444444444444444443333
No 128
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=33.87 E-value=7.5e+02 Score=31.70 Aligned_cols=22 Identities=14% Similarity=-0.031 Sum_probs=14.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHh
Q 001600 9 KELASKYEQIKASAEAAELLQK 30 (1047)
Q Consensus 9 KEwtSKyEeLkqa~~eae~~lK 30 (1047)
-.+...++++...++.+.++..
T Consensus 34 l~P~~~~~~i~~~l~~~~e~~~ 55 (771)
T TIGR01069 34 LKPPKSVEESKEIIIKLTALGS 55 (771)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 3455667777777777776654
No 129
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=33.45 E-value=8e+02 Score=28.29 Aligned_cols=82 Identities=17% Similarity=0.311 Sum_probs=43.3
Q ss_pred HhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHH
Q 001600 124 AERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEK 203 (1047)
Q Consensus 124 aeRKL~eVEaRE~~LrRerlSf~aE~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNqREe~~~e~~~~l~~kEk 203 (1047)
++-.|.+++.|-.+|.-+---+.+|.++....+..||-..---+ -+.+.-|.....+-.|=-+ .-+.|.|-.-
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~---s~Leddlsqt~aikeql~k----yiReLEQaND 122 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQE---SQLEDDLSQTHAIKEQLRK----YIRELEQAND 122 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHhcc
Confidence 34456666777666666666666777777776666663322222 2223333333333322223 3345556666
Q ss_pred HHHHHhhcH
Q 001600 204 ELEASRANV 212 (1047)
Q Consensus 204 eLEeak~ki 212 (1047)
+||-++...
T Consensus 123 dLErakRat 131 (333)
T KOG1853|consen 123 DLERAKRAT 131 (333)
T ss_pred HHHHhhhhh
Confidence 777666543
No 130
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.36 E-value=1.3e+03 Score=30.56 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=47.3
Q ss_pred hHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHH
Q 001600 194 KLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKII 273 (1047)
Q Consensus 194 ~~~~l~~kEkeLEeak~kie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLl 273 (1047)
-...++..-++|++.=+..-+.+..|++.-++|+.++-..+..-.+...-.........+|..+ ..++++|.
T Consensus 679 ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~--------~~e~k~l~ 750 (970)
T KOG0946|consen 679 MEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAA--------LSENKKLE 750 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHH--------HHHHHHHH
Confidence 3445555566666666666677888888888888888877666655555444455555555443 34555555
Q ss_pred HHh
Q 001600 274 ANH 276 (1047)
Q Consensus 274 deh 276 (1047)
.+|
T Consensus 751 ~~q 753 (970)
T KOG0946|consen 751 NDQ 753 (970)
T ss_pred HHH
Confidence 443
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=33.02 E-value=5.7e+02 Score=32.25 Aligned_cols=20 Identities=25% Similarity=0.425 Sum_probs=10.7
Q ss_pred hhhhhhhhHHHHHHHHHHHh
Q 001600 519 KMVHEHSEWFTKIQQERADF 538 (1047)
Q Consensus 519 kMehErs~~~eKiq~Erad~ 538 (1047)
+++|||..-.++|-++|+++
T Consensus 681 ~ve~eRr~eqeRihreReel 700 (940)
T KOG4661|consen 681 KVEEERRDEQERIHREREEL 700 (940)
T ss_pred HHHHhhcchhhhhhhhHHHH
Confidence 44455555555555555543
No 132
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=32.60 E-value=2.7e+02 Score=34.05 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHHHHH
Q 001600 419 VLEIKLKEELDVVRAQKLELMVETDKLQLE 448 (1047)
Q Consensus 419 rLQseLKeEId~~R~Qke~LlkEae~Lk~e 448 (1047)
-.|.=||--||+.|.|..-+.-|-.+||-+
T Consensus 507 niq~llkva~dnar~qekQiq~Ek~ELkmd 536 (641)
T KOG3915|consen 507 NIQGLLKVAIDNARAQEKQIQLEKTELKMD 536 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999998887776666543
No 133
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=32.08 E-value=3e+02 Score=26.44 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=32.8
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q 001600 399 QVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFE 453 (1047)
Q Consensus 399 qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE 453 (1047)
+|..+-+-+..++=|=.|+----..|.+|++.+|+....|..|.+.||++...|.
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq 66 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444456666777777777777777777777766543
No 134
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=32.03 E-value=7.6e+02 Score=27.57 Aligned_cols=9 Identities=56% Similarity=0.508 Sum_probs=3.3
Q ss_pred HHHhHHHHH
Q 001600 60 CIASLEKAV 68 (1047)
Q Consensus 60 CVadLEKAL 68 (1047)
|.+-+++|+
T Consensus 41 ~~~A~~~A~ 49 (297)
T PF02841_consen 41 NRAAVEKAV 49 (297)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 135
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=31.43 E-value=9.8e+02 Score=28.69 Aligned_cols=26 Identities=12% Similarity=-0.049 Sum_probs=11.9
Q ss_pred cCCCCcccccCC-CCCCCCCCCccccc
Q 001600 753 HSGENSVENDEE-KSPTSDHEDASLTI 778 (1047)
Q Consensus 753 ~SP~Kk~~~~~e-~~~~s~~~~~~~~~ 778 (1047)
+||+-++..+.- .+++|.--..+++|
T Consensus 421 lspS~~ASSSlt~~pcSSPV~~k~llG 447 (561)
T KOG1103|consen 421 LSPSLPASSSLTPRPCSSPVKKKPLLG 447 (561)
T ss_pred cCCCCcccccCCCCCCCCccccccccc
Confidence 556555544432 33444444444444
No 136
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=31.41 E-value=8.6e+02 Score=28.02 Aligned_cols=43 Identities=14% Similarity=0.017 Sum_probs=31.1
Q ss_pred hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchh
Q 001600 80 VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHR 122 (1047)
Q Consensus 80 ~taesKLaEA~aLv~~~eeKs~EaE~KL~aAea~~AEa~Rk~s 122 (1047)
+..+.+...+.....-++...-++..+|.+|+..+..--+++.
T Consensus 160 ~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~ 202 (444)
T TIGR03017 160 TNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKG 202 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4445666677777777788888888888888887777666543
No 137
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=31.14 E-value=1.1e+03 Score=29.00 Aligned_cols=411 Identities=17% Similarity=0.198 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhh
Q 001600 145 FKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKS 224 (1047)
Q Consensus 145 f~aE~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNqREe~~~e~~~~l~~kEkeLEeak~kie~~~~~Lk~ke~ 224 (1047)
|.+|--+..=.|.+-+..+.+-+-.|...+..+.....-|++=-+.-..+...+..+.....+.++.+-.-+-.+=.
T Consensus 89 ~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~--- 165 (569)
T PRK04778 89 FEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGP--- 165 (569)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc---
Q ss_pred hhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHhhhhhhhHHHHHHHHhhhHHHHHHH
Q 001600 225 NLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEK 304 (1047)
Q Consensus 225 dl~~rl~~l~~rEee~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh~a~L~~KK~EFElElE~krKs~eeEle~ 304 (1047)
+++.++..|..-|.+...|.+=-++=.=++-..++..
T Consensus 166 --------------a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~----------------------------- 202 (569)
T PRK04778 166 --------------ALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQ----------------------------- 202 (569)
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH-----------------------------
Q ss_pred HHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhH---------HHHHHhHHHHHHHHHH
Q 001600 305 KRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLI---------AFEKEADLKKSLLQKE 375 (1047)
Q Consensus 305 K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLk---------aeEK~le~ek~~L~~e 375 (1047)
.+..+..=++.++.==.=+.+..+.|-+-+..|+.==+.|. ..+++|..=+.+|..-
T Consensus 203 --------------l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~ 268 (569)
T PRK04778 203 --------------LEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDEN 268 (569)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHH-------
Q 001600 376 KEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLE------- 448 (1047)
Q Consensus 376 KEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~e------- 448 (1047)
...|..+ +|....+.+..=..+|+.--+.|+--..-+...-.....+..-|+.++.+-..|..|.+.|++.
T Consensus 269 ~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e 346 (569)
T PRK04778 269 LALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESE 346 (569)
T ss_pred HHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchh
Q ss_pred ---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhh
Q 001600 449 ---KAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHS 525 (1047)
Q Consensus 449 ---KekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelEsL~~ekEsF~~kMehErs 525 (1047)
...|+.+-+.|...-..+..........-..+..-+. .+...++.+..++.+|-..+.
T Consensus 347 ~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~le---------------el~e~leeie~eq~ei~e~l~---- 407 (569)
T PRK04778 347 LESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELE---------------EILKQLEEIEKEQEKLSEMLQ---- 407 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH----
Q ss_pred hHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHH
Q 001600 526 EWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDL 605 (1047)
Q Consensus 526 ~~~eKiq~Erad~l~d~EmqkreLE~~i~~R~EEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLek 605 (1047)
.=+.-|..+.++...+...|. +-.+.-+..++..+=+-.-.-+..+.-++.+|..
T Consensus 408 -------------------~Lrk~E~eAr~kL~~~~~~L~------~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~ 462 (569)
T PRK04778 408 -------------------GLRKDELEAREKLERYRNKLH------EIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAE 462 (569)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHhhh
Q 001600 606 ERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLH---ADREEIQAESERLKK 661 (1047)
Q Consensus 606 ER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~---~ERe~f~~~vE~lK~ 661 (1047)
+......|-...+.+..+...+++.|..+..-|-+...++- ..+++|..+......
T Consensus 463 ~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~V~~ 521 (569)
T PRK04778 463 ELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQYANRYRSDNEEVAE 521 (569)
T ss_pred HhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHH
No 138
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=30.99 E-value=9.2e+02 Score=28.21 Aligned_cols=206 Identities=27% Similarity=0.332 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHH--------------HHHHHHHHHHHHHHHHH
Q 001600 370 SLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS--------------VLEIKLKEELDVVRAQK 435 (1047)
Q Consensus 370 ~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER~E~l--------------rLQseLKeEId~~R~Qk 435 (1047)
..|++-.+-|..|-.+|++.+.+-..=+..+.+=+++...++.-..++. .=+..|=+-+-.+|.+-
T Consensus 2 rKL~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~N 81 (319)
T PF09789_consen 2 RKLQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQN 81 (319)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHH
Confidence 3566666677777777777766666666666655544444443333332 12234444455555555
Q ss_pred HHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH---HHHHhhhhhhhhh
Q 001600 436 LELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMR---DQHKRDVDSLNRE 512 (1047)
Q Consensus 436 e~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r---~~~krelEsL~~e 512 (1047)
.-|..|.+.|++...--..+--+|-++-+..+-....+. -+ -+. .|++.|=..-..++ .++++++-++--+
T Consensus 82 k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~-~~----~~~-~ere~lV~qLEk~~~q~~qLe~d~qs~lDE 155 (319)
T PF09789_consen 82 KKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIG-AR----HFP-HEREDLVEQLEKLREQIEQLERDLQSLLDE 155 (319)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccc-cc----ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655555555555555554444332222221 00 000 22222222222222 2344555555555
Q ss_pred HHHHHHhhhhhhhhHHHHH---HHHHHHhhhhhHhhhhhhHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 001600 513 REEFMNKMVHEHSEWFTKI---QQERADFLLGIEMQKRDLENC-IEKRREELESSFREREKAFEEEKMREFQQISSLKEK 588 (1047)
Q Consensus 513 kEsF~~kMehErs~~~eKi---q~Erad~l~d~EmqkreLE~~-i~~R~EEiE~~L~EREk~FEeek~~EL~~IN~lkE~ 588 (1047)
+++++ -||+..-.|+ ..|-+.+|.+=+..--+++.- |+| +||++|=+..++|+.---.+|+-.|.+
T Consensus 156 keEl~----~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~EN------RyL~erl~q~qeE~~l~k~~i~KYK~~ 225 (319)
T PF09789_consen 156 KEELV----TERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMEN------RYLKERLKQLQEEKELLKQTINKYKSA 225 (319)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55543 3555554444 345566665544433333332 233 599999999999999999999988877
Q ss_pred HHH
Q 001600 589 AEK 591 (1047)
Q Consensus 589 a~k 591 (1047)
+.+
T Consensus 226 le~ 228 (319)
T PF09789_consen 226 LER 228 (319)
T ss_pred HHh
Confidence 653
No 139
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=30.85 E-value=9.4e+02 Score=28.28 Aligned_cols=24 Identities=8% Similarity=0.224 Sum_probs=12.2
Q ss_pred hhhhHHHHHHhHHHHHHHHHhhhh
Q 001600 53 TLGVEKECIASLEKAVHEIRAESA 76 (1047)
Q Consensus 53 ALgvEKqCVadLEKAL~Emr~E~A 76 (1047)
-+..-++=+...|.+|.+.|.++.
T Consensus 169 ql~~~~~~L~~ae~~l~~f~~~~~ 192 (498)
T TIGR03007 169 QIKTYEKKLEAAENRLKAFKQENG 192 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 334444445555555555555544
No 140
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=30.78 E-value=5.1e+02 Score=34.41 Aligned_cols=10 Identities=10% Similarity=-0.280 Sum_probs=4.1
Q ss_pred HHHHHHHHhh
Q 001600 651 EIQAESERLK 660 (1047)
Q Consensus 651 ~f~~~vE~lK 660 (1047)
.++.-++.-.
T Consensus 528 ~~~~~~~~~~ 537 (1021)
T PTZ00266 528 YFLKGMENGL 537 (1021)
T ss_pred hhhhhccccc
Confidence 3444444433
No 141
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=30.41 E-value=1.4e+03 Score=30.24 Aligned_cols=373 Identities=17% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q 001600 238 EAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLG 317 (1047)
Q Consensus 238 ee~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh~a~L~~KK~EFElElE~krKs~eeEle~K~~~~E~rEvel~ 317 (1047)
+++...+--|.-.+..|.+||-++.-+| ++.|+|-|--.+.-+-+|.. +-+|++-...++.-|.+|+
T Consensus 92 rdv~llEddlk~~~sQiriLQn~c~~lE-~ekq~lQ~ti~~~q~d~ke~------------etelE~~~srlh~le~eLs 158 (1265)
T KOG0976|consen 92 RDVNLLEDDLKHHESQIRILQNKCLRLE-MEKQKLQDTIQGAQDDKKEN------------EIEIENLNSRLHKLEDELS 158 (1265)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH------------HHHHHhhHHHHHHHHHHHh
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 001600 318 QREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKK 397 (1047)
Q Consensus 318 h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~ 397 (1047)
-.=.-|--.-.+|--+-..|.+++..|..|+...-+.-+.+.-.-+++ ..-...+.++-..-...+-.+-.+-...
T Consensus 159 Ak~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~----~e~~~~nD~~sle~~~~q~~tq~vl~ev 234 (1265)
T KOG0976|consen 159 AKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKF----KEDLIEKDQKSLELHKDQENTQKVLKEV 234 (1265)
T ss_pred hhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhcchHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001600 398 KQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVER 477 (1047)
Q Consensus 398 ~qi~ee~E~LkitkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEr 477 (1047)
.|+.--.+-|....-.- +.|++..+-+-+--.+|..-.-+|+.-......|--.-.+--.+++.++.....-|
T Consensus 235 ~QLss~~q~ltp~rk~~-------s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~ 307 (1265)
T KOG0976|consen 235 MQLSSQKQTLTPLRKTC-------SMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTR 307 (1265)
T ss_pred HHHHHhHhhhhhHhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred -------HHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhH
Q 001600 478 -------VVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLE 550 (1047)
Q Consensus 478 -------e~lek~~~~E~erLK~Ek~~~r~~~krelEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE 550 (1047)
+--.+|++.|--.|+.++.++|-..... ++.=|+|-.+.. |+|-++-.++
T Consensus 308 t~a~gdseqatkylh~enmkltrqkadirc~LlEa----rrk~egfddk~~-------------------eLEKkrd~al 364 (1265)
T KOG0976|consen 308 TRADGDSEQATKYLHLENMKLTRQKADIRCALLEA----RRKAEGFDDKLN-------------------ELEKKRDMAL 364 (1265)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhcchhHHHH-------------------HHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHH
Q 001600 551 NCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEE 630 (1047)
Q Consensus 551 ~~i~~R~EEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIee 630 (1047)
++...-++-.+..=.+.-...+..-+++ +.|.-||..+-+ +++.+----....|-++....-..+..+....-.-..-
T Consensus 365 ~dvr~i~e~k~nve~elqsL~~l~aerq-eQidelKn~if~-~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~ 442 (1265)
T KOG0976|consen 365 MDVRSIQEKKENVEEELQSLLELQAERQ-EQIDELKNHIFR-LEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSN 442 (1265)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhh-hhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001600 631 LMVQRQKLEEQRQLLHADREEIQAESERL 659 (1047)
Q Consensus 631 L~~ls~KLk~QRE~~~~ERe~f~~~vE~l 659 (1047)
..+|-.--+--|+.-|.--+..++||.-+
T Consensus 443 fk~Lke~aegsrrraIeQcnemv~rir~l 471 (1265)
T KOG0976|consen 443 FKVLKEHAEGSRRRAIEQCNEMVDRIRAL 471 (1265)
T ss_pred HHHHHHhhhhhHhhHHHHHHHHHHHHHHH
No 142
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=28.41 E-value=1.2e+03 Score=28.84 Aligned_cols=85 Identities=19% Similarity=0.208 Sum_probs=67.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001600 410 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD 489 (1047)
Q Consensus 410 tkeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~e 489 (1047)
+.+=|.|--.||++||.=--.|++=.+.-+.|. ++|-+|=-.|=.+|-=--.=..|..++...|-.+++-.-+=-+
T Consensus 406 LqEsr~eKetLqlelkK~k~nyv~LQEry~~ei----QqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALd 481 (527)
T PF15066_consen 406 LQESRNEKETLQLELKKIKANYVHLQERYMTEI----QQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALD 481 (527)
T ss_pred HHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHH----HHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777889999988888888888888886 6788888888887765555566778888888888888888888
Q ss_pred hhHHHHHHH
Q 001600 490 SLRQERDAM 498 (1047)
Q Consensus 490 rLK~Ek~~~ 498 (1047)
+||.||..-
T Consensus 482 lLkrEKe~~ 490 (527)
T PF15066_consen 482 LLKREKETR 490 (527)
T ss_pred HHHHHHHHH
Confidence 888888764
No 143
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=28.27 E-value=1e+03 Score=27.87 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhHH
Q 001600 627 SIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLK 666 (1047)
Q Consensus 627 dIeeL~~ls~KLk~QRE~~~~ERe~f~~~vE~lK~ckncg 666 (1047)
|||.|-+=.+-|+.+=.++..|++=...-|-+||+.=+|+
T Consensus 190 DIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~k 229 (319)
T PF09789_consen 190 DIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALERK 229 (319)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999876664
No 144
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=27.72 E-value=1.5e+02 Score=29.10 Aligned_cols=66 Identities=29% Similarity=0.261 Sum_probs=45.5
Q ss_pred hhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcch
Q 001600 53 TLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYH 121 (1047)
Q Consensus 53 ALgvEKqCVadLEKAL~Emr~E~AeiK~taesKLaEA~aLv~~~eeKs~EaE~KL~aAea~~AEa~Rk~ 121 (1047)
.|.-|+.=...+|.....|-.|.-+. +.+=|.+||.||+.+......++.|...++..+.++....
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeL---TasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l 67 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEEL---TASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALL 67 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566777777787777763 3455799999999888877777777766666665555443
No 145
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=27.43 E-value=6.7e+02 Score=25.68 Aligned_cols=73 Identities=22% Similarity=0.332 Sum_probs=46.5
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001600 575 KMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQA 654 (1047)
Q Consensus 575 k~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~f~~ 654 (1047)
|+.=+..+......+..||+++.++.+|+.+|-.-.+. ..+..++..+...|..+..-+..++.
T Consensus 18 K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~----------------~~~~~i~~q~~~e~~~r~e~k~~l~~ 81 (131)
T PF11068_consen 18 KEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNA----------------QQIQSIQQQFEQEKQERLEQKNQLLQ 81 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----------------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777888889999999999999888654443 33344445555555555555555666
Q ss_pred HHHHhhhhh
Q 001600 655 ESERLKKLE 663 (1047)
Q Consensus 655 ~vE~lK~ck 663 (1047)
+++++..++
T Consensus 82 ql~qv~~L~ 90 (131)
T PF11068_consen 82 QLEQVQKLE 90 (131)
T ss_dssp HHHHHHHS-
T ss_pred HHHHHhcCC
Confidence 666655544
No 146
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=27.39 E-value=20 Score=44.04 Aligned_cols=154 Identities=19% Similarity=0.212 Sum_probs=0.0
Q ss_pred hhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHH-------h----chHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhh
Q 001600 126 RKLQEVVAREDDLSRRIASFKADCEEKEREIIRER-------Q----SLSDRKKILQQEHERLLDAQTLLNEREDHILSK 194 (1047)
Q Consensus 126 RKL~eVEaRE~~LrRerlSf~aE~ea~E~~~~~qR-------e----~L~eweKkLqe~eeRL~e~qrlLNqREe~~~e~ 194 (1047)
.+.++++..-..|+.++-++..+.......+..-- . .+.++..++...++.+......+..=.-++...
T Consensus 193 q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~l 272 (713)
T PF05622_consen 193 QRCHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEEL 272 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666677777777766655544433211 1 123334444444443332221111112222233
Q ss_pred HHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHH
Q 001600 195 LQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIA 274 (1047)
Q Consensus 195 ~~~l~~kEkeLEeak~kie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLld 274 (1047)
...+..+..+.+++...-+ +..+|+++-|-+..+...+...|-++...+..|+ ++-.+. ..+ +.|.
T Consensus 273 e~ei~~L~q~~~eL~~~A~-~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLe----d~~~lk--------~qv-k~Le 338 (713)
T PF05622_consen 273 EKEIDELRQENEELQAEAR-EARALRDELDELREKADRADKLENEVEKYKKKLE----DLEDLK--------RQV-KELE 338 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH--------HHH-HHHH
Confidence 3333444444444333322 4566777777666666666666665555554332 222221 112 4566
Q ss_pred HhHHHhhhhhhhHHHHHHH
Q 001600 275 NHESALRVKQSEFEAELAI 293 (1047)
Q Consensus 275 eh~a~L~~KK~EFElElE~ 293 (1047)
++++.|--.+..+|-++..
T Consensus 339 e~N~~l~e~~~~LEeel~~ 357 (713)
T PF05622_consen 339 EDNAVLLETKAMLEEELKK 357 (713)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777777777777766643
No 147
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=27.07 E-value=5.8e+02 Score=24.62 Aligned_cols=59 Identities=22% Similarity=0.360 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 001600 417 LSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVV 479 (1047)
Q Consensus 417 ~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~ 479 (1047)
|..|+++.++=||.+ ..|.-|+++||.+......|-..+-.-|..|..+...+..++-+
T Consensus 6 leqLE~KIqqAvdtI----~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~ 64 (79)
T PRK15422 6 FEKLEAKVQQAIDTI----TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 64 (79)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 456888888888876 56777888888766666555555555555555555544444433
No 148
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=26.92 E-value=5.3e+02 Score=29.37 Aligned_cols=84 Identities=21% Similarity=0.295 Sum_probs=61.0
Q ss_pred hhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh----hhHHHHHHH
Q 001600 348 SHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEA----GELSVLEIK 423 (1047)
Q Consensus 348 sk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkitkeER----~E~lrLQse 423 (1047)
--.+.+-|+.|+..=+.+ ..++.+=+..+.++..|--.+-+-|+..+..+...+.+|..+++=| +||-.|+.+
T Consensus 157 ~~e~~~iE~~l~~ai~~~---~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~E 233 (267)
T PF10234_consen 157 PLELNEIEKALKEAIKAV---QQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEE 233 (267)
T ss_pred CcCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 334555666666655555 4445555566777777777777778888888888888999998877 789999999
Q ss_pred HHHHHHHHHHH
Q 001600 424 LKEELDVVRAQ 434 (1047)
Q Consensus 424 LKeEId~~R~Q 434 (1047)
|++--+.|=..
T Consensus 234 L~~lY~~Y~~k 244 (267)
T PF10234_consen 234 LQKLYEIYVEK 244 (267)
T ss_pred HHHHHHHHHHH
Confidence 99987776443
No 149
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=26.60 E-value=9e+02 Score=26.71 Aligned_cols=106 Identities=22% Similarity=0.237 Sum_probs=71.5
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHh
Q 001600 64 LEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIA 143 (1047)
Q Consensus 64 LEKAL~Emr~E~AeiK~taesKLaEA~aLv~~~eeKs~EaE~KL~aAea~~AEa~Rk~s~aeRKL~eVEaRE~~LrRerl 143 (1047)
|+-++++|+.++..++-+...-++..+.+-..+..=...++.=-..|...+.-.+ +.=||+-.- ++-
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~-----------E~LAr~al~--~~~ 95 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN-----------EDLAREALE--EKQ 95 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------HHHHHHHHH--HHH
Confidence 7888999999999988888777777777776666655555554444554444333 333333322 344
Q ss_pred HhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhh
Q 001600 144 SFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQT 182 (1047)
Q Consensus 144 Sf~aE~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qr 182 (1047)
++..-+.+++..+..+++.+-..++.+...+..+.+...
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~ 134 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRA 134 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888888887777777777777777776653
No 150
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=26.43 E-value=6.1e+02 Score=29.82 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001600 330 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKS 384 (1047)
Q Consensus 330 Le~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~ 384 (1047)
+..+-..|++.|++|-+|+..||.-- .-+.++|+..+.+|..|.-.++.-|+
T Consensus 350 vkekE~elke~Ekel~~kf~~lkr~h---~eEk~kle~~rr~Leee~~~f~~rk~ 401 (406)
T KOG3859|consen 350 VKEKEAELKEAEKELHEKFDRLKRLH---QEEKKKLEEKRKQLEEEVNAFQRRKT 401 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667888888888888777532 23445677777788777766665544
No 151
>KOG2350 consensus Zn-finger protein joined to JAZF1 (predicted suppressor) [General function prediction only]
Probab=26.04 E-value=75 Score=34.71 Aligned_cols=50 Identities=22% Similarity=0.149 Sum_probs=37.4
Q ss_pred cCCCCCcchhHHHHHHHHHhccCCCCcccccCCCCCCCCCCCccc-cc-----cccCCccccc
Q 001600 732 ASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASL-TI-----NSRKRQPVRY 788 (1047)
Q Consensus 732 ~SP~s~g~~SWlrKCTskIFk~SP~Kk~~~~~e~~~~s~~~~~~~-~~-----~~~k~q~iry 788 (1047)
.+|.+.+|+-=+-+||.++|.-+-.-++++ |+++...+ +. -.+-+||.++
T Consensus 55 ~~~~~~~p~t~i~~~~p~~~att~k~~aer-------sd~~v~~l~lhkRqffHS~t~qPl~l 110 (221)
T KOG2350|consen 55 NGPVKRTPITHILVCRPKRTATTMKEFAER-------SDGEVEQLRLHKRQFFHSDTCQPLRL 110 (221)
T ss_pred CCCCCCCcchhhhccchHhhhhcccccccc-------cccceeeeccccceeeeccccCCCCH
Confidence 567777888889999999999887555555 66666666 33 2677888886
No 152
>PRK11519 tyrosine kinase; Provisional
Probab=25.77 E-value=1.4e+03 Score=28.72 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=20.2
Q ss_pred hhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcc
Q 001600 81 AADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRY 120 (1047)
Q Consensus 81 taesKLaEA~aLv~~~eeKs~EaE~KL~aAea~~AEa~Rk 120 (1047)
..+.|...|...++-+++...++..+|..|+..++.--+.
T Consensus 257 ~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 257 NIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555444333
No 153
>PRK10884 SH3 domain-containing protein; Provisional
Probab=25.42 E-value=7.4e+02 Score=26.96 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhHHhhHHH
Q 001600 424 LKEELDVVRAQKLELMVETDKL 445 (1047)
Q Consensus 424 LKeEId~~R~Qke~LlkEae~L 445 (1047)
|++++...+.+-..|-++.+++
T Consensus 144 L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 144 LKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 154
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=25.24 E-value=9.9e+02 Score=26.70 Aligned_cols=8 Identities=50% Similarity=0.405 Sum_probs=2.5
Q ss_pred hHHHHHHh
Q 001600 358 LIAFEKEA 365 (1047)
Q Consensus 358 LkaeEK~l 365 (1047)
|...+|.+
T Consensus 199 L~~~ek~~ 206 (297)
T PF02841_consen 199 LTEKEKEI 206 (297)
T ss_dssp S-HHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 155
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=24.63 E-value=9.1e+02 Score=26.10 Aligned_cols=48 Identities=19% Similarity=0.334 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhh
Q 001600 494 ERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGI 542 (1047)
Q Consensus 494 Ek~~~r~~~krelEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~ 542 (1047)
.-...++.|+.-++.|..-+..|+..|.. =...|-.+..+|-+|++++
T Consensus 168 ~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~-~~~~~Q~lEe~Ri~~lk~~ 215 (239)
T cd07647 168 SAEEADSAYKSSIGCLEDARVEWESEHAT-ACQVFQNMEEERIKFLRNA 215 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34457889999999999999999999985 3444455666777777654
No 156
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=24.27 E-value=2e+03 Score=29.88 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=41.5
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHhHH
Q 001600 547 RDLENCIEKRREELESSFREREKA-FEEEKMREF-QQISSLKEKAEKELEQVTLEIKRLDL 605 (1047)
Q Consensus 547 reLE~~i~~R~EEiE~~L~EREk~-FEeek~~EL-~~IN~lkE~a~kE~Eev~lE~~rLek 605 (1047)
-.|=..|....++.+..|.||++. ||+=-..++ .+|...--.|+.=+..|.-.|..+..
T Consensus 1085 ~~l~~~l~~~i~~~~~ll~e~er~l~E~~L~~~v~~~l~~ri~~A~~~v~~mN~~l~~~~~ 1145 (1353)
T TIGR02680 1085 AGLLARLEQEIAQRRELLTARERELLENHLQGEIARHLQSLILAAERQVAAMNTELAKRPT 1145 (1353)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 456677888888888999999875 666554444 34556666666677777777777665
No 157
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=24.12 E-value=8.6e+02 Score=25.63 Aligned_cols=68 Identities=21% Similarity=0.287 Sum_probs=36.6
Q ss_pred hHHHHHhhhhhHHHHHHHHHHhhhhHHHHh-------hhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001600 319 REESLLEREHDLEVQSRALVDKEKDLVERS-------HLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLS 391 (1047)
Q Consensus 319 ~Eekl~kREqaLe~k~~~lkEKEkdl~~Ks-------k~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra 391 (1047)
.|+..-...++|..+...|.+--+-|..++ ..|.+.+-.|+..-+.+ -..+++-+..++.-+++.+.
T Consensus 83 ~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l------~er~~e~l~~~~e~ver~k~ 156 (158)
T PF09744_consen 83 LEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRL------HERERELLRKLKEHVERQKD 156 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444 44455555554444444 34566777788888887765
Q ss_pred h
Q 001600 392 S 392 (1047)
Q Consensus 392 ~ 392 (1047)
.
T Consensus 157 ~ 157 (158)
T PF09744_consen 157 E 157 (158)
T ss_pred c
Confidence 4
No 158
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=24.10 E-value=1.3e+03 Score=27.85 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=10.7
Q ss_pred HhHHHHHHhhhhhhhhhH
Q 001600 602 RLDLERMEINMDRQRRDR 619 (1047)
Q Consensus 602 rLekER~Ei~~~ke~le~ 619 (1047)
.|-.||.-+.+.-+++..
T Consensus 410 ~l~~ek~al~lqlErl~~ 427 (511)
T PF09787_consen 410 SLGSEKNALRLQLERLET 427 (511)
T ss_pred HHHhhhhhccccHHHHHH
Confidence 555666666666555554
No 159
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=23.80 E-value=7.8e+02 Score=30.55 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=71.8
Q ss_pred hhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHH
Q 001600 127 KLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELE 206 (1047)
Q Consensus 127 KL~eVEaRE~~LrRerlSf~aE~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNqREe~~~e~~~~l~~kEkeLE 206 (1047)
...|.++||+.++ .+|....+-.-..+..-.--......-.+-...||.-.........+.+.+-.+.+.+++.+|+
T Consensus 403 ~~~E~esRE~LIk---~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~ 479 (518)
T PF10212_consen 403 ESPEEESREQLIK---SYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELE 479 (518)
T ss_pred cCCchhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3668888885533 3444444444444433333333444445555556665555566666778888889999999999
Q ss_pred HHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHH
Q 001600 207 ASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIERE 244 (1047)
Q Consensus 207 eak~kie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~ 244 (1047)
..+..-+.-+.++-+--..++.+|+ ...++++.++
T Consensus 480 TTr~NYE~QLs~MSEHLasmNeqL~---~Q~eeI~~LK 514 (518)
T PF10212_consen 480 TTRRNYEEQLSMMSEHLASMNEQLA---KQREEIQTLK 514 (518)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 9999999998888887777666554 3344555443
No 160
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=23.40 E-value=27 Score=43.05 Aligned_cols=79 Identities=20% Similarity=0.225 Sum_probs=0.0
Q ss_pred hhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 001600 316 LGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDE 395 (1047)
Q Consensus 316 l~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~ 395 (1047)
+.|.=+++.+.|..+++=-.+|.+. .+|..+.+.|++.=..+.----.||.+....-.-+..+..++..|..+...+.+
T Consensus 303 lR~~a~r~~klE~~ve~YKkKLed~-~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~ 381 (713)
T PF05622_consen 303 LREKADRADKLENEVEKYKKKLEDL-EDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSE 381 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666555555553 355556666665444333222233333333333333444444444444333333
No 161
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=22.93 E-value=6e+02 Score=23.37 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHh
Q 001600 526 EWFTKIQQERADFLLGIEMQKRDLENCIEKRREELES 562 (1047)
Q Consensus 526 ~~~eKiq~Erad~l~d~EmqkreLE~~i~~R~EEiE~ 562 (1047)
.+...+...+..|+..|+-........|......++.
T Consensus 50 ~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~ 86 (127)
T smart00502 50 ELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQ 86 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444433333333
No 162
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=22.90 E-value=1.7e+03 Score=29.38 Aligned_cols=97 Identities=23% Similarity=0.286 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhh
Q 001600 447 LEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSE 526 (1047)
Q Consensus 447 ~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelEsL~~ekEsF~~kMehErs~ 526 (1047)
.|..--.+.-|+|--|.++|-|..+...+|..+|.+.++.=...|+. .+.+|.-+...++++=++-+.+|++=+
T Consensus 441 ~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~----~kq~~d~e~~rik~ev~eal~~~k~~q-- 514 (861)
T PF15254_consen 441 NQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLE----NKQQFDIETTRIKIEVEEALVNVKSLQ-- 514 (861)
T ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 33334445566777788888888888888888887777654444443 345666667778888888888888544
Q ss_pred HHHHHHHHHHHhhhhhHhhhhhhH
Q 001600 527 WFTKIQQERADFLLGIEMQKRDLE 550 (1047)
Q Consensus 527 ~~eKiq~Erad~l~d~EmqkreLE 550 (1047)
|.-...|...++++|.++-|+-|
T Consensus 515 -~kLe~sekEN~iL~itlrQrDaE 537 (861)
T PF15254_consen 515 -FKLEASEKENQILGITLRQRDAE 537 (861)
T ss_pred -hhHHHHHhhhhHhhhHHHHHHHH
Confidence 34445677777888877766654
No 163
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=22.84 E-value=1.4e+03 Score=27.72 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHH
Q 001600 167 KKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELE 206 (1047)
Q Consensus 167 eKkLqe~eeRL~e~qrlLNqREe~~~e~~~~l~~kEkeLE 206 (1047)
++++.+........+.-|++=+..++..+..|...+.+|.
T Consensus 51 ~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~ 90 (420)
T COG4942 51 EKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLK 90 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3333333333333333333333333333333333333333
No 164
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=22.71 E-value=1.9e+03 Score=29.20 Aligned_cols=236 Identities=17% Similarity=0.148 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhH
Q 001600 50 LKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQ 129 (1047)
Q Consensus 50 LkKALgvEKqCVadLEKAL~Emr~E~AeiK~taesKLaEA~aLv~~~eeKs~EaE~KL~aAea~~AEa~Rk~s~aeRKL~ 129 (1047)
|-.+.+--..-++-++-.|.+|..+.++..+.++.-+.+.. ++-.-.+-|.+...-.-.|.+...+++++-.
T Consensus 349 l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~e--------qLr~elaql~a~r~q~eka~~~~ee~e~~~l 420 (980)
T KOG0980|consen 349 LENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQE--------QLRNELAQLLASRTQLEKAQVLVEEAENKAL 420 (980)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred HHhhhhhHHHHHHhHhhhh-------hhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhH
Q 001600 130 EVVAREDDLSRRIASFKAD-------CEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKE 202 (1047)
Q Consensus 130 eVEaRE~~LrRerlSf~aE-------~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNqREe~~~e~~~~l~~kE 202 (1047)
-.+.|=..|---.--|..+ ..-.-+.+.-++++..+.++...+....|.+.++-...=+-...+....+...+
T Consensus 421 ~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~ 500 (980)
T KOG0980|consen 421 AAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLR 500 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhH---------HHHHHHHhhh---hhHHHH
Q 001600 203 KELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKL---------LVSQETLASK---ESNEIQ 270 (1047)
Q Consensus 203 keLEeak~kie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkeL---------l~leEKL~aR---E~~EIQ 270 (1047)
.+|..+...++.--.++..-...-+..++.|...++.-|..-..+-.+|.++ .+.+-.|..+ |-...|
T Consensus 501 ~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~~~~~e~e~si~ql~l~~~~~~ea~~tQ 580 (980)
T KOG0980|consen 501 QELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEEREALRLEAERSINQLELDSSASTEAGITQ 580 (980)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcccccchHHHHHH
Q ss_pred HHHHHhHHHhhhhhhhHHHHHHH
Q 001600 271 KIIANHESALRVKQSEFEAELAI 293 (1047)
Q Consensus 271 KLldeh~a~L~~KK~EFElElE~ 293 (1047)
-..+....+|+.-.-.-+-.|..
T Consensus 581 ~~~~~~~~il~~~~~~~~q~lq~ 603 (980)
T KOG0980|consen 581 LQDDLNDPILDGSLASGIQALQN 603 (980)
T ss_pred HHHHhccHHHHHHHHHHHHHHHH
No 165
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=22.67 E-value=1.3e+03 Score=27.07 Aligned_cols=93 Identities=19% Similarity=0.234 Sum_probs=56.0
Q ss_pred hhhhHhhHhhHHHHhHhHHHHHHHhhcHHHH--HHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHh
Q 001600 185 NEREDHILSKLQELSRKEKELEASRANVEEK--FKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLA 262 (1047)
Q Consensus 185 NqREe~~~e~~~~l~~kEkeLEeak~kie~~--~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkeLl~leEKL~ 262 (1047)
..|++.+.++.+.-...++++|+....---. ...|+-.-..+..|-.--..+| +..|..-++.+-.|+|++-
T Consensus 344 kkr~eeaeerqraeekeq~eaee~~ra~kr~egvkllkf~fekieareerrkqke------eeklk~e~qkikeleek~~ 417 (445)
T KOG2891|consen 344 KKREEEAEERQRAEEKEQKEAEELERARKREEGVKLLKFEFEKIEAREERRKQKE------EEKLKAEEQKIKELEEKIK 417 (445)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777554322111 1233333334433332222222 2345556677888999999
Q ss_pred hhhhHHHHHHHHHhHHHhhhh
Q 001600 263 SKESNEIQKIIANHESALRVK 283 (1047)
Q Consensus 263 aRE~~EIQKLldeh~a~L~~K 283 (1047)
.-|..-.+-|+.-+.+-|...
T Consensus 418 eeedal~~all~~qeirl~~~ 438 (445)
T KOG2891|consen 418 EEEDALLLALLNLQEIRLIAE 438 (445)
T ss_pred HHHHHHHHHHHhhHHHHHHHH
Confidence 999988888888888776543
No 166
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=22.64 E-value=1.9e+03 Score=29.06 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=29.4
Q ss_pred HHHHHhhHhhhhhhhhHHHHHH---------hHHHHHHHHHhhhhhhhhhhhhhhhHHHH
Q 001600 41 AEARKREESLKKTLGVEKECIA---------SLEKAVHEIRAESAETKVAADSKFAEARC 91 (1047)
Q Consensus 41 sEaeKREEnLkKALgvEKqCVa---------dLEKAL~Emr~E~AeiK~taesKLaEA~a 91 (1047)
+...-|.+-|.+.+|++.---. .....+..++.....+-..++..++....
T Consensus 164 a~~~eR~~il~~l~g~~~y~~~~~~l~er~k~~~~~l~~l~~~l~~~~~ls~e~~~~l~~ 223 (1047)
T PRK10246 164 AKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQVQSLTA 223 (1047)
T ss_pred CChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHH
Confidence 3567789999999999985421 12334445555555444444444444433
No 167
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=22.38 E-value=1e+03 Score=26.89 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 001600 163 LSDRKKILQQEHERLLDAQT 182 (1047)
Q Consensus 163 L~eweKkLqe~eeRL~e~qr 182 (1047)
+.+.+..|.+.+..|...+.
T Consensus 216 i~~L~~~l~~~~~~l~~l~~ 235 (362)
T TIGR01010 216 ISTLEGELIRVQAQLAQLRS 235 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444443
No 168
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=21.95 E-value=1.7e+03 Score=28.17 Aligned_cols=35 Identities=11% Similarity=0.267 Sum_probs=17.3
Q ss_pred HhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHh
Q 001600 219 LNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQK 253 (1047)
Q Consensus 219 Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEke 253 (1047)
|..+...+..++..+...|.++..++...+..+.-
T Consensus 351 L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~l 385 (726)
T PRK09841 351 LEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAV 385 (726)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555555555544444433
No 169
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=20.85 E-value=1.6e+03 Score=27.46 Aligned_cols=126 Identities=17% Similarity=0.285 Sum_probs=80.6
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhh----HHHHHHhcchhHHhhhhHHHhhhhhHHH--
Q 001600 66 KAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAE----SLQAEANRYHRSAERKLQEVVAREDDLS-- 139 (1047)
Q Consensus 66 KAL~Emr~E~AeiK~taesKLaEA~aLv~~~eeKs~EaE~KL~aAe----a~~AEa~Rk~s~aeRKL~eVEaRE~~Lr-- 139 (1047)
..|+.||.+.|-+|.++.+-.++-...|.++-.|...+=. .++. |-.|=++.-+..+......+-++=|+|+
T Consensus 155 ~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~--~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~ 232 (426)
T smart00806 155 AELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKS--SSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDI 232 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6688889999999988888888888888888887765532 1111 1112122122222222233333333222
Q ss_pred -----------------HHHhHhhhhhhHHHHHHHHHHhchH----HHHHHHHHHHHHHHHHhhhhhhhhHhhHh
Q 001600 140 -----------------RRIASFKADCEEKEREIIRERQSLS----DRKKILQQEHERLLDAQTLLNEREDHILS 193 (1047)
Q Consensus 140 -----------------RerlSf~aE~ea~E~~~~~qRe~L~----eweKkLqe~eeRL~e~qrlLNqREe~~~e 193 (1047)
++.-+...|..+..+++....+++. -|.|.-...=+.+|+.|..||--|+-+..
T Consensus 233 vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~D 307 (426)
T smart00806 233 IEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIAD 307 (426)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677777777777776665 48888777788999999999988877654
No 170
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=20.84 E-value=1.6e+03 Score=27.66 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=20.1
Q ss_pred hhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHH
Q 001600 182 TLLNEREDHILSKLQELSRKEKELEASRANVEEKFKAL 219 (1047)
Q Consensus 182 rlLNqREe~~~e~~~~l~~kEkeLEeak~kie~~~~~L 219 (1047)
.+...++.-+..+...+..+|++-+++.++.......+
T Consensus 185 ~l~~~~dk~~~~rk~m~D~KEreaeea~k~aq~~K~ea 222 (489)
T PF05262_consen 185 ELREDKDKGIDKRKDMVDIKEREAEEAAKRAQEAKKEA 222 (489)
T ss_pred HHhhccccChhhhhhhHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444555555555556666666665555544443333
No 171
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=20.62 E-value=1.2e+03 Score=25.95 Aligned_cols=120 Identities=26% Similarity=0.361 Sum_probs=66.8
Q ss_pred HHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhH
Q 001600 241 IEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQRE 320 (1047)
Q Consensus 241 ~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh~a~L~~KK~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~E 320 (1047)
+.+-..|-++|.+|-..+++..+-|+.-. .|..+ + +-+...+++ |...+
T Consensus 84 eEVarkL~iiE~dLE~~eeraE~~Es~~~-eLeEe---------------~----~~~~~nlk~-----------l~~~e 132 (205)
T KOG1003|consen 84 EEVARKLVIIEGELERAEERAEAAESQSE-ELEED---------------L----RILDSNLKS-----------LSAKE 132 (205)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHH---------------H----HHhHhHHHH-----------HHHHH
Confidence 34456788889999888888887775321 12111 1 111222222 33345
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 001600 321 ESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLD 394 (1047)
Q Consensus 321 ekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e 394 (1047)
+++..++-..+.+++.+.+|=+.-+.+-... |++..+.+|.+..=-..|...++....++.+|-.+..+++
T Consensus 133 e~~~q~~d~~e~~ik~ltdKLkEaE~rAE~a---ERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L~ 203 (205)
T KOG1003|consen 133 EKLEQKEEKYEEELKELTDKLKEAETRAEFA---ERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQELE 203 (205)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhhhhhhHHHH---HHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566666666666666666555544444443 3555555555554455556666666666666666655553
No 172
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.59 E-value=2.2e+03 Score=29.18 Aligned_cols=224 Identities=22% Similarity=0.277 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH----
Q 001600 426 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ---- 501 (1047)
Q Consensus 426 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~eL~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~---- 501 (1047)
.++|.++.+++-|+.+.++|.. +.+ |-....-|..-|+..+.+..-+-+.+.+.+ +.+.+|...+.+.
T Consensus 652 k~~~~L~~~k~rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l----~~~~~El~~~~~~i~~~ 723 (1141)
T KOG0018|consen 652 KEVDQLKEKKERLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSL----EQNELELQRTESEIDEF 723 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhh
Confidence 4555555555555555555555 333 444455555555555555554444444222 2334444444443
Q ss_pred ------HHhhhhhhhhhHHHHHHhhhhhhhhHHH----------------HHHHHHHHhhhhhHhhhhhhHHHHHHHHHH
Q 001600 502 ------HKRDVDSLNREREEFMNKMVHEHSEWFT----------------KIQQERADFLLGIEMQKRDLENCIEKRREE 559 (1047)
Q Consensus 502 ------~krelEsL~~ekEsF~~kMehErs~~~e----------------Kiq~Erad~l~d~EmqkreLE~~i~~R~EE 559 (1047)
++|.++.......+...+|..=-+.+|. ..+++.++=++.|+-|+--|++.|+=-+..
T Consensus 724 ~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~~ 803 (1141)
T KOG0018|consen 724 GPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQK 803 (1141)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheecc
Confidence 3455555555555555555522222221 127888888888999998888887643331
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHH
Q 001600 560 LESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLE 639 (1047)
Q Consensus 560 iE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk 639 (1047)
--..=-+|...+=+.-+.++..+---.+.+.+++-.+ .+|.. ++ ..-=+..+.+|.+.++...-|+..-.||.
T Consensus 804 d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~--k~----k~~~~~~~~e~~e~~k~~~~~~~~~tkl~ 876 (1141)
T KOG0018|consen 804 DTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK--KN----KSKFEKKEDEINEVKKILRRLVKELTKLD 876 (1141)
T ss_pred cHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111123444444555566666666666666666665 44433 22 22234456677777777777777777776
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhhhhHH
Q 001600 640 EQRQLLHADREEIQAESERLKKLEDLK 666 (1047)
Q Consensus 640 ~QRE~~~~ERe~f~~~vE~lK~ckncg 666 (1047)
.++-.+-..++++.. |.+.-+..|+
T Consensus 877 ~~i~~~es~ie~~~~--er~~lL~~ck 901 (1141)
T KOG0018|consen 877 KEITSIESKIERKES--ERHNLLSKCK 901 (1141)
T ss_pred hhhhhhhhHHHHHHH--HHHHHHHHhh
Confidence 666555555555543 2333344454
No 173
>PRK10884 SH3 domain-containing protein; Provisional
Probab=20.45 E-value=7e+02 Score=27.16 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=33.6
Q ss_pred HHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhh
Q 001600 175 ERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNL 226 (1047)
Q Consensus 175 eRL~e~qrlLNqREe~~~e~~~~l~~kEkeLEeak~kie~~~~~Lk~ke~dl 226 (1047)
++..+.+..+++++..+++-.....++..+|+.++.+++.....+...++++
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666777777777777777777777766655555555544
No 174
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=20.44 E-value=1.4e+03 Score=27.02 Aligned_cols=135 Identities=15% Similarity=0.230 Sum_probs=80.5
Q ss_pred HHHHHHHHHhHHHhhhhhhhHHHHHH---HHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhh
Q 001600 267 NEIQKIIANHESALRVKQSEFEAELA---IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKD 343 (1047)
Q Consensus 267 ~EIQKLldeh~a~L~~KK~EFElElE---~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkd 343 (1047)
.|+.+++-.-++...+.-.+-=.=++ +-++++..-+..-..-+.+--.+|..-=++|..||.-|+.+++-+-..=..
T Consensus 198 lEvERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~ 277 (359)
T PF10498_consen 198 LEVERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRS 277 (359)
T ss_pred HHHHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444444444444444444444333 445667777777778888888899999999999999999999888776555
Q ss_pred HHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHHHHHH
Q 001600 344 LVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEK--KKQVNCAK 404 (1047)
Q Consensus 344 l~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q--~~qi~ee~ 404 (1047)
...+++.+.++= +..-..+......|-.=.++|...|.+++.--+++.+. +-+|.++.
T Consensus 278 ~~~~ls~~~~~y---~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl 337 (359)
T PF10498_consen 278 AQDELSEVQEKY---KQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQAL 337 (359)
T ss_pred HHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 555555555443 33334444334444444555555555555544444433 23444443
No 175
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.16 E-value=5.9e+02 Score=26.51 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 001600 422 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEW 456 (1047)
Q Consensus 422 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW 456 (1047)
.++++||+++..+-....+|++.||.|-+.+.+|.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677777777777778888999999988888875
No 176
>PRK11281 hypothetical protein; Provisional
Probab=20.07 E-value=2.3e+03 Score=29.03 Aligned_cols=122 Identities=18% Similarity=0.181 Sum_probs=61.9
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHH-----------HhhcHHHHHHHHh
Q 001600 152 KEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEA-----------SRANVEEKFKALN 220 (1047)
Q Consensus 152 ~E~~~~~qRe~L~eweKkLqe~eeRL~e~qrlLNqREe~~~e~~~~l~~kEkeLEe-----------ak~kie~~~~~Lk 220 (1047)
.|..+..-...|.+|+..|.+....|...+...-..-..+.++.+.+......|.. .+..+..+...|+
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~ 205 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLN 205 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 55556666667777777777777777766665555555556666666666655532 2333344444443
Q ss_pred hhhhhhhHhHHHHhhhH----HHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHH
Q 001600 221 EEKSNLDLTLVSLLKRE----EAVIEREASLQKKEQKLLVSQETLASKESNEIQKII 273 (1047)
Q Consensus 221 ~ke~dl~~rl~~l~~rE----ee~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLl 273 (1047)
-+-+-...-+.+-+.+- ...+-....+..-|..+..||+.++.|-..+-++-+
T Consensus 206 ~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~ 262 (1113)
T PRK11281 206 AQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTV 262 (1113)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222222222211111 122333344455555666666666665555544433
Done!