Query 001600
Match_columns 1047
No_of_seqs 40 out of 42
Neff 3.1
Searched_HMMs 13730
Date Tue Mar 26 17:28:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001600.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_896-900//hhsearch_scop/001600hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b77a1 d.131.1.2 (A:1-110) gp 3.8 98 0.0071 5.2 0.9 24 780-805 84-107 (110)
2 d2htja1 a.4.5.73 (A:1-73) P fi 3.3 1.2E+02 0.0087 4.6 2.2 30 649-679 2-31 (73)
3 d1fiua_ c.52.1.10 (A:) Restric 3.2 1.2E+02 0.009 4.5 2.1 19 740-758 74-92 (286)
4 d1pb5a_ g.65.1.1 (A:) Neurogen 2.8 1.4E+02 0.01 4.0 0.4 25 933-957 1-25 (35)
5 d1lmra_ g.3.6.3 (A:) ADO1 {Ass 2.5 1.3E+02 0.0094 4.3 -0.5 17 980-1004 2-18 (35)
6 d1ef1c_ a.137.5.1 (C:) Moesin 2.4 1.7E+02 0.012 3.5 0.0 10 381-390 37-46 (90)
7 d1ov9a_ a.155.1.1 (A:) H-NS-li 2.4 1.7E+02 0.013 3.4 3.2 39 180-218 3-41 (45)
8 d1q7sa_ c.131.1.1 (A:) Bit1 (C 2.2 1.9E+02 0.014 3.2 0.4 37 791-833 50-86 (117)
9 d2jrxa1 a.284.1.1 (A:1-75) Unc 2.1 2.1E+02 0.015 2.9 5.3 52 643-694 10-61 (75)
10 d2jpqa1 a.284.1.1 (A:1-75) Hyp 2.0 2.1E+02 0.015 2.8 5.6 52 643-694 10-61 (75)
No 1
>d1b77a1 d.131.1.2 (A:1-110) gp45 sliding clamp {Bacteriophage RB69 [TaxId: 12353]}
Probab=3.82 E-value=98 Score=5.18 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCH
Q ss_conf 56785432125998031037995100
Q 001600 780 SRKRQPVRYSFGEPKVILEVPSENEV 805 (1047)
Q Consensus 780 ~~k~q~irya~gepkvilevp~~~~~ 805 (1047)
-+.+..+.|-|.+|-+| |+|+.++
T Consensus 84 ~~~~s~~~y~~adpsiI--~~P~K~i 107 (110)
T d1b77a1 84 ADTRSTVYWPAADKSTI--VFPNKPI 107 (110)
T ss_dssp ECSSEEEEECCBCGGGS--CCCSSCC
T ss_pred CCCCCEEEEECCCCCCE--ECCCCCC
T ss_conf 38972799975993405--4799768
No 2
>d2htja1 a.4.5.73 (A:1-73) P fimbrial regulatory protein PapI {Escherichia coli [TaxId: 562]}
Probab=3.27 E-value=1.2e+02 Score=4.59 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7999999998421124786776675846421
Q 001600 649 REEIQAESERLKKLEDLKIAVDYMAVSEMQR 679 (1047)
Q Consensus 649 Re~f~~~vE~lK~ckncg~~~~~~vLSdlq~ 679 (1047)
+++|+.|+-.+.+| .--++.+.+.+|+.|-
T Consensus 2 kn~Il~fl~~~~~~-~T~EIAea~gvsaYQA 31 (73)
T d2htja1 2 KNEILEFLNRHNGG-KTAEIAEALAVTDYQA 31 (73)
T ss_dssp HHHHHHHHHHSCCC-CHHHHHHHHTSCHHHH
T ss_pred CHHHHHHHHHCCCC-CHHHHHHHHHHHHHHH
T ss_conf 20899998844896-3789999963389999
No 3
>d1fiua_ c.52.1.10 (A:) Restriction endonuclease NgoIV {Neisseria gonorrhoeae [TaxId: 485]}
Probab=3.16 E-value=1.2e+02 Score=4.47 Aligned_cols=19 Identities=0% Similarity=-0.080 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHCCCCCCC
Q ss_conf 2699987998732278886
Q 001600 740 FSWIKRFADLVFKHSGENS 758 (1047)
Q Consensus 740 ~SWlrKCTskIFk~SP~Kk 758 (1047)
-.|+++|-.++..+-|++=
T Consensus 74 ~~Fi~~tf~~l~hlRPG~W 92 (286)
T d1fiua_ 74 SEFVQSAFEKLQHIRPGDW 92 (286)
T ss_dssp HHHHHHHHGGGTTTSCSCE
T ss_pred HHHHHHHHHHHHCCCCCCC
T ss_conf 9999999998615788874
No 4
>d1pb5a_ g.65.1.1 (A:) Neurogenic locus notch homolog protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.79 E-value=1.4e+02 Score=4.00 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=14.2
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf 0022013455323223368986502
Q 001600 933 EVTCEMTDADNFINQEKIDGSQNSV 957 (1047)
Q Consensus 933 evtce~~~~~~~~~qe~~~~~~~~~ 957 (1047)
|++||+..|...+.--.-|..||.-
T Consensus 1 e~~CEi~qC~~~~gNkiC~~~CNnh 25 (35)
T d1pb5a_ 1 EEACELPECQEDAGNKVCSLQCNNH 25 (35)
T ss_dssp CCSCSCTTHHHHTTSSSCCTTTCST
T ss_pred CCCCCCCHHHHHCCCCCHHHHCCCC
T ss_conf 9621021414432772312113654
No 5
>d1lmra_ g.3.6.3 (A:) ADO1 {Assassin bug (Agriosphodrus dohrni) [TaxId: 184613]}
Probab=2.53 E-value=1.3e+02 Score=4.34 Aligned_cols=17 Identities=47% Similarity=0.530 Sum_probs=12.3
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 8754552101102468863169422
Q 001600 980 DDVVLPYISEIDGMVQEKQMGNVKD 1004 (1047)
Q Consensus 980 ~~~~~p~~~~~~~~~~e~~~~~~~~ 1004 (1047)
|+|-||-|| +|+|.|++
T Consensus 2 d~dclprgs--------kclgenkq 18 (35)
T d1lmra_ 2 DDDCLPRGS--------KCLGENKQ 18 (35)
T ss_dssp CSCCCCTTC--------CCSSCCCC
T ss_pred CCCCCCCCC--------CCCCCCHH
T ss_conf 643345655--------10165400
No 6
>d1ef1c_ a.137.5.1 (C:) Moesin tail domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.45 E-value=1.7e+02 Score=3.51 Aligned_cols=10 Identities=20% Similarity=0.351 Sum_probs=3.2
Q ss_pred HHHHHHHHHH
Q ss_conf 8798899745
Q 001600 381 IIKSDLQKSL 390 (1047)
Q Consensus 381 ~lK~dlEK~r 390 (1047)
.|+.||+..+
T Consensus 37 ~L~~EL~~~k 46 (90)
T d1ef1c_ 37 ALTSELANAR 46 (90)
T ss_dssp HHHHHHHTTB
T ss_pred HHHHHHHHHH
T ss_conf 9999999965
No 7
>d1ov9a_ a.155.1.1 (A:) H-NS-like protein VicH {Vibrio cholerae [TaxId: 666]}
Probab=2.38 E-value=1.7e+02 Score=3.42 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
Q ss_conf 765431225756766798748688799986407998988
Q 001600 180 AQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKA 218 (1047)
Q Consensus 180 ~qrlLNqREe~~~e~~~~l~~kEkeLEeak~kie~~~~~ 218 (1047)
.+.++|-|.=++..|+-.+.|.|.-|+-....++.-+.+
T Consensus 3 ~K~llNiRSLRA~~ReltlEQLee~LeKl~~vV~er~ea 41 (45)
T d1ov9a_ 3 TKTLLNIRSLRAYARELTIEQLEEALDKLTTVVQERKEA 41 (45)
T ss_dssp HHHHTCHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999997898999998744999999999999999998876
No 8
>d1q7sa_ c.131.1.1 (A:) Bit1 (Cgi-147) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.22 E-value=1.9e+02 Score=3.16 Aligned_cols=37 Identities=19% Similarity=0.402 Sum_probs=0.0
Q ss_pred CCCEEEECCCCCCCHHHHCCCCCCCCCHHHHHHCCCCCCCCCH
Q ss_conf 9980310379951002220221000003333110356541002
Q 001600 791 GEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGI 833 (1047)
Q Consensus 791 gepkvilevp~~~~~~~~~~~les~~~~~~n~~~~~~~~~~~~ 833 (1047)
|-+||+|.||++.+...-. .....++-..+.|.|.|.
T Consensus 50 g~~KIvl~v~~e~~l~~l~------~~a~~~~l~~~~i~DAG~ 86 (117)
T d1q7sa_ 50 GQPKVVVKAPDEETLIALL------AHAKMLGLTVSLIQDAGR 86 (117)
T ss_dssp TCCEEEEEESSHHHHHHHH------HHHHHTTCCEEEEEECSS
T ss_pred CCCEEEEECCCHHHHHHHH------HHHHHCCCCEEEEECCCC
T ss_conf 9937999639999999999------999987998899984897
No 9
>d2jrxa1 a.284.1.1 (A:1-75) Uncharacterized protein YejL {Escherichia coli [TaxId: 562]}
Probab=2.05 E-value=2.1e+02 Score=2.87 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9989847999999998421124786776675846421034301444468753
Q 001600 643 QLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRH 694 (1047)
Q Consensus 643 E~~~~ERe~f~~~vE~lK~ckncg~~~~~~vLSdlq~s~~~~~~~ki~a~~~ 694 (1047)
++|-.==..+++-.|+++.--++..+.=-...+.+.+..++|.|+...|..|
T Consensus 10 ~qvE~il~el~~vLeKh~Ap~DLSLMvLGN~vTniln~~V~~~qR~~iAe~F 61 (75)
T d2jrxa1 10 EQVEQLLAELLNVLEKHKAPTDLSLMVLGNMVTNLINTSIAPAQRQAIANSF 61 (75)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999999999986589830599999899999998308999999999999
No 10
>d2jpqa1 a.284.1.1 (A:1-75) Hypothetical protein VP2129 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=2.04 E-value=2.1e+02 Score=2.85 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9989847999999998421124786776675846421034301444468753
Q 001600 643 QLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRH 694 (1047)
Q Consensus 643 E~~~~ERe~f~~~vE~lK~ckncg~~~~~~vLSdlq~s~~~~~~~ki~a~~~ 694 (1047)
+++-.==.++++-.|+++.--++..+.=-...+.+.+..+++.|+...|..|
T Consensus 10 ~qvE~il~el~~vLeKh~Ap~DLSLMvLGN~vTniln~~V~~~qR~~iAe~F 61 (75)
T d2jpqa1 10 EQVEKILAEVALVLEKHAASPELTLMIAGNIATNVLNQRVAASQRKLIAEKF 61 (75)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999999999986599840599999899999998307899999999999
Done!