BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001601
         (1046 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Y3A|B Chain B, Crystal Structure Of P110beta In Complex With Icsh2 Of
           P85beta And The Drug Gdc-0941
          Length = 302

 Score = 35.0 bits (79), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 29/164 (17%)

Query: 283 KEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLK----------------- 325
           KE+ ++A+  ++K Y    + K RE++ + +   + SQEL +K                 
Sbjct: 9   KEDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQ 68

Query: 326 -EKQLKCVQESLEGCRNEFEEKENE--LISVEKLIDKCSEELELKKKHLCVIENSAAELS 382
            + Q KC +E LE  R E  EKE +  L++ E+L  + +E  E + K   + ++  A+ S
Sbjct: 69  GQTQEKCSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTK---LEQDLRAQAS 125

Query: 383 DECE----SNELELDLIQTMAI--GYLKQLKEKEKQFHSLKEAL 420
           D  E     N L+ DL+Q   I   YL  L +K  +   + E L
Sbjct: 126 DNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQKGARQRKINEWL 169


>pdb|3GNN|A Chain A, Crystal Structure Of Nicotinate-Nucleotide
           Pyrophosphorylase From Burkholderi Pseudomallei
 pdb|3GNN|B Chain B, Crystal Structure Of Nicotinate-Nucleotide
           Pyrophosphorylase From Burkholderi Pseudomallei
          Length = 298

 Score = 33.5 bits (75), Expect = 0.62,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 11/87 (12%)

Query: 535 PASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSS------VTPEINPQ---- 584
           P S+ +DA+   +   SRE    FD +I R     L E + S      + P+  P+    
Sbjct: 2   PGSMTIDAVSPLFADISREYGAAFDAAIARNVADALAEDVGSGDQTGRLVPDGAPRRARV 61

Query: 585 -VRDEAMKVAGEWKKKMRVAEDNSLEV 610
            VR++A+     W   +  A D S+EV
Sbjct: 62  IVREDAVLCGVPWFDAVVRAVDPSIEV 88


>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii
           Mevalonate Kinase
          Length = 317

 Score = 32.3 bits (72), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 8/74 (10%)

Query: 175 IELKEKDLRKIRSSIEE----CEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKS 230
           +E+K    RKI+   EE    C+  +V  EK       L+ + A ++E+K++++ EI K 
Sbjct: 170 LEIKNNKFRKIKGEFEEFLKNCKFLIVYAEKRKKKTAELVNEVA-KIENKDEIFKEIDKV 228

Query: 231 IIQCETKLDCKKKE 244
           I   +  L  K KE
Sbjct: 229 I---DEALKIKNKE 239


>pdb|1VIS|A Chain A, Crystal Structure Of Mevalonate Kinase
          Length = 324

 Score = 32.3 bits (72), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 8/74 (10%)

Query: 175 IELKEKDLRKIRSSIEE----CEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKS 230
           +E+K    RKI+   EE    C+  +V  EK       L+ + A ++E+K++++ EI K 
Sbjct: 167 LEIKNNKFRKIKGEFEEFLKNCKFLIVYAEKRKKKTAELVNEVA-KIENKDEIFKEIDKV 225

Query: 231 IIQCETKLDCKKKE 244
           I   +  L  K KE
Sbjct: 226 I---DEALKIKNKE 236


>pdb|3MTT|A Chain A, Crystal Structure Of Ish2 Domain Of Human P85beta,
           Northeast Structural Genomics Consortium Target Hr5531c
          Length = 187

 Score = 29.6 bits (65), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 20/100 (20%)

Query: 283 KEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLK----------------- 325
           KE+ ++A+  ++K Y    + K RE++ + +   + SQEL +K                 
Sbjct: 4   KEDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQ 63

Query: 326 -EKQLKCVQESLEGCRNEFEEKENE--LISVEKLIDKCSE 362
            + Q KC +E LE  R E  EKE +  L++ E+L  + +E
Sbjct: 64  GQTQEKCSKEYLERFRREGNEKEMQRILLNSERLKSRIAE 103


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,313,613
Number of Sequences: 62578
Number of extensions: 1051896
Number of successful extensions: 3751
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 3511
Number of HSP's gapped (non-prelim): 233
length of query: 1046
length of database: 14,973,337
effective HSP length: 109
effective length of query: 937
effective length of database: 8,152,335
effective search space: 7638737895
effective search space used: 7638737895
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)