Query 001601
Match_columns 1046
No_of_seqs 156 out of 174
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 04:51:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001601.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001601hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07899 Frigida: Frigida-like 100.0 2.6E-72 5.7E-77 610.1 24.7 270 497-908 17-290 (290)
2 PF07899 Frigida: Frigida-like 100.0 2.9E-36 6.2E-41 328.6 11.6 161 680-841 40-214 (290)
3 PRK02224 chromosome segregatio 99.1 2.1E-05 4.6E-10 98.0 54.3 75 164-238 319-393 (880)
4 PRK02224 chromosome segregatio 99.0 0.00052 1.1E-08 85.8 58.9 16 294-309 525-540 (880)
5 PRK01156 chromosome segregatio 98.7 0.0036 7.9E-08 78.8 57.1 10 692-701 823-832 (895)
6 PRK01156 chromosome segregatio 98.7 0.0049 1.1E-07 77.7 59.4 6 70-75 261-266 (895)
7 TIGR02169 SMC_prok_A chromosom 98.6 0.0016 3.4E-08 82.9 47.4 34 76-109 682-715 (1164)
8 TIGR02169 SMC_prok_A chromosom 98.6 0.0014 3.1E-08 83.3 46.2 10 1012-1021 1141-1150(1164)
9 TIGR00606 rad50 rad50. This fa 98.6 0.0097 2.1E-07 78.3 53.8 138 164-308 797-939 (1311)
10 KOG0161 Myosin class II heavy 98.6 0.015 3.2E-07 78.0 55.8 51 37-87 815-867 (1930)
11 TIGR02168 SMC_prok_B chromosom 98.5 0.0049 1.1E-07 78.2 48.6 7 402-408 973-979 (1179)
12 PRK03918 chromosome segregatio 98.5 0.011 2.4E-07 74.0 58.6 9 693-701 811-819 (880)
13 TIGR00606 rad50 rad50. This fa 98.5 0.019 4.1E-07 75.7 56.9 131 15-149 514-657 (1311)
14 KOG0161 Myosin class II heavy 98.4 0.034 7.3E-07 74.8 58.5 43 96-138 936-978 (1930)
15 COG1196 Smc Chromosome segrega 98.3 0.011 2.5E-07 76.8 43.8 17 411-427 1013-1029(1163)
16 KOG0933 Structural maintenance 98.3 0.018 3.8E-07 72.2 41.9 133 139-274 716-853 (1174)
17 COG1196 Smc Chromosome segrega 98.2 0.034 7.3E-07 72.6 45.8 21 604-624 1070-1090(1163)
18 KOG0996 Structural maintenance 97.8 0.23 5.1E-06 63.6 42.7 103 206-318 371-473 (1293)
19 PF00261 Tropomyosin: Tropomyo 97.6 0.085 1.8E-06 57.3 28.5 128 330-457 84-211 (237)
20 KOG4674 Uncharacterized conser 97.6 0.78 1.7E-05 61.8 55.0 190 185-374 1151-1375(1822)
21 PF00261 Tropomyosin: Tropomyo 97.5 0.17 3.6E-06 55.0 29.0 84 320-403 116-199 (237)
22 KOG0995 Centromere-associated 97.5 0.51 1.1E-05 57.1 43.1 99 164-276 292-393 (581)
23 KOG0250 DNA repair protein RAD 97.5 0.2 4.4E-06 63.9 32.9 67 128-194 278-351 (1074)
24 KOG0933 Structural maintenance 97.4 0.92 2E-05 57.8 52.1 39 593-631 1073-1113(1174)
25 KOG0996 Structural maintenance 97.3 1.2 2.5E-05 57.8 53.5 54 86-139 416-469 (1293)
26 PF05483 SCP-1: Synaptonemal c 97.1 1.2 2.7E-05 54.8 52.3 161 104-268 297-482 (786)
27 PF10174 Cast: RIM-binding pro 97.0 1.8 3.8E-05 54.9 52.1 73 166-238 301-373 (775)
28 KOG0964 Structural maintenance 96.9 2.2 4.7E-05 54.5 38.6 101 290-397 395-495 (1200)
29 KOG1029 Endocytic adaptor prot 96.9 2 4.4E-05 53.6 32.9 119 261-380 424-549 (1118)
30 COG0419 SbcC ATPase involved i 96.9 2.5 5.3E-05 54.4 59.1 20 314-333 563-582 (908)
31 PF10174 Cast: RIM-binding pro 96.9 2.4 5.2E-05 53.8 52.3 132 77-208 289-420 (775)
32 KOG0971 Microtubule-associated 96.9 2.4 5.2E-05 53.7 35.8 167 239-409 300-477 (1243)
33 PRK11637 AmiB activator; Provi 96.9 0.73 1.6E-05 54.1 28.1 17 253-269 113-129 (428)
34 KOG0995 Centromere-associated 96.8 2.2 4.7E-05 51.9 43.4 213 128-367 291-518 (581)
35 KOG0250 DNA repair protein RAD 96.8 3.2 6.9E-05 53.7 52.2 78 72-149 306-383 (1074)
36 KOG4674 Uncharacterized conser 96.5 6.1 0.00013 53.9 57.0 56 6-64 679-734 (1822)
37 PF12128 DUF3584: Protein of u 96.4 5.9 0.00013 52.6 59.1 55 19-73 242-296 (1201)
38 PHA02562 46 endonuclease subun 96.3 3.8 8.2E-05 49.2 30.5 68 167-237 182-249 (562)
39 PF12128 DUF3584: Protein of u 96.3 7 0.00015 52.0 48.5 62 86-147 473-534 (1201)
40 PHA02562 46 endonuclease subun 96.2 1.7 3.7E-05 52.1 26.4 59 166-224 220-278 (562)
41 KOG0976 Rho/Rac1-interacting s 95.5 10 0.00023 47.8 49.8 238 46-301 87-367 (1265)
42 PF05667 DUF812: Protein of un 95.5 9.8 0.00021 47.2 32.1 195 93-288 325-536 (594)
43 KOG0018 Structural maintenance 95.4 13 0.00029 48.3 34.7 87 66-153 661-747 (1141)
44 TIGR03185 DNA_S_dndD DNA sulfu 95.3 11 0.00023 46.9 35.9 28 28-56 171-198 (650)
45 PF07888 CALCOCO1: Calcium bin 95.2 11 0.00023 46.3 42.3 38 334-371 364-401 (546)
46 PF07888 CALCOCO1: Calcium bin 95.2 11 0.00024 46.2 42.7 22 427-448 436-457 (546)
47 PF05483 SCP-1: Synaptonemal c 95.0 14 0.0003 46.2 55.0 92 183-282 352-443 (786)
48 COG1579 Zn-ribbon protein, pos 94.9 5 0.00011 44.5 21.4 94 219-317 28-121 (239)
49 KOG0018 Structural maintenance 94.8 19 0.00041 47.0 37.7 147 163-317 224-374 (1141)
50 KOG0612 Rho-associated, coiled 94.7 21 0.00047 47.1 40.2 8 749-756 1121-1128(1317)
51 COG1579 Zn-ribbon protein, pos 94.6 7.4 0.00016 43.2 21.9 144 164-328 15-160 (239)
52 KOG0962 DNA repair protein RAD 94.0 31 0.00068 46.1 49.9 58 384-443 1012-1069(1294)
53 PRK04863 mukB cell division pr 93.9 36 0.00078 46.6 40.7 37 851-891 1209-1246(1486)
54 PF05667 DUF812: Protein of un 93.6 25 0.00054 43.8 33.5 62 165-226 320-381 (594)
55 COG1340 Uncharacterized archae 93.5 17 0.00037 41.5 31.1 31 117-147 37-67 (294)
56 KOG4643 Uncharacterized coiled 93.3 35 0.00075 44.5 42.4 52 80-138 175-226 (1195)
57 PF05701 WEMBL: Weak chloropla 93.0 28 0.0006 42.6 48.2 40 81-120 33-79 (522)
58 KOG0976 Rho/Rac1-interacting s 93.0 34 0.00074 43.6 46.7 104 164-267 104-207 (1265)
59 COG4372 Uncharacterized protei 93.0 24 0.00051 41.7 28.2 68 221-288 181-248 (499)
60 KOG0971 Microtubule-associated 93.0 37 0.0008 43.8 38.7 78 257-334 403-486 (1243)
61 KOG0979 Structural maintenance 92.6 43 0.00093 43.8 26.5 76 164-246 281-356 (1072)
62 PRK04778 septation ring format 92.6 33 0.00071 42.3 49.9 77 223-301 257-333 (569)
63 KOG4673 Transcription factor T 91.7 45 0.00098 42.0 35.0 176 298-473 476-671 (961)
64 KOG0964 Structural maintenance 91.5 57 0.0012 42.6 41.3 93 119-211 673-765 (1200)
65 PF10473 CENP-F_leu_zip: Leuci 90.9 21 0.00046 36.8 18.0 90 57-149 9-98 (140)
66 KOG0962 DNA repair protein RAD 90.5 79 0.0017 42.6 47.7 109 90-199 217-337 (1294)
67 TIGR03185 DNA_S_dndD DNA sulfu 90.1 59 0.0013 40.6 38.5 27 353-379 389-415 (650)
68 PF09726 Macoilin: Transmembra 89.8 69 0.0015 40.8 27.0 104 212-315 457-575 (697)
69 KOG0979 Structural maintenance 88.7 93 0.002 40.9 27.0 38 279-316 305-342 (1072)
70 TIGR03319 YmdA_YtgF conserved 88.6 46 0.00099 40.8 21.1 8 698-705 392-399 (514)
71 PRK04863 mukB cell division pr 88.5 1.2E+02 0.0026 41.9 45.4 21 766-786 1038-1058(1486)
72 PF00038 Filament: Intermediat 88.0 50 0.0011 37.0 32.7 47 221-267 208-254 (312)
73 PRK12704 phosphodiesterase; Pr 87.6 73 0.0016 39.2 22.0 10 698-707 398-407 (520)
74 PF09726 Macoilin: Transmembra 87.4 96 0.0021 39.6 27.7 41 170-213 538-578 (697)
75 PF15619 Lebercilin: Ciliary p 87.4 46 0.001 35.9 24.5 136 164-308 59-194 (194)
76 PF12718 Tropomyosin_1: Tropom 86.9 40 0.00086 34.6 17.3 40 418-457 97-136 (143)
77 PF15619 Lebercilin: Ciliary p 86.2 53 0.0012 35.4 22.9 185 68-278 5-192 (194)
78 PF10146 zf-C4H2: Zinc finger- 86.1 14 0.00031 40.7 13.7 103 173-275 4-107 (230)
79 KOG1029 Endocytic adaptor prot 85.7 1.2E+02 0.0026 39.0 34.8 25 1010-1036 1060-1084(1118)
80 KOG1003 Actin filament-coating 85.1 63 0.0014 35.3 23.8 63 257-323 88-150 (205)
81 COG5185 HEC1 Protein involved 84.7 1E+02 0.0023 37.5 31.7 61 285-345 368-435 (622)
82 PF00038 Filament: Intermediat 84.0 79 0.0017 35.4 37.1 69 164-232 80-148 (312)
83 PF08317 Spc7: Spc7 kinetochor 84.0 64 0.0014 37.1 18.2 26 211-236 183-208 (325)
84 PF05557 MAD: Mitotic checkpoi 83.9 9.5 0.00021 48.0 12.6 39 175-213 269-307 (722)
85 PRK09039 hypothetical protein; 83.2 99 0.0021 36.0 20.7 47 172-218 45-91 (343)
86 PF01576 Myosin_tail_1: Myosin 82.8 0.39 8.4E-06 61.3 0.0 57 518-574 466-530 (859)
87 PRK00106 hypothetical protein; 82.5 46 0.00099 41.1 17.0 9 699-707 414-422 (535)
88 KOG0977 Nuclear envelope prote 81.9 1.4E+02 0.0031 37.0 27.8 75 164-238 97-174 (546)
89 PRK00106 hypothetical protein; 81.7 45 0.00097 41.2 16.6 9 567-575 281-289 (535)
90 TIGR03319 YmdA_YtgF conserved 81.1 48 0.001 40.6 16.6 9 567-575 260-268 (514)
91 COG2433 Uncharacterized conser 80.5 32 0.0007 42.7 14.6 41 36-76 330-370 (652)
92 PF10473 CENP-F_leu_zip: Leuci 80.4 76 0.0016 32.8 15.7 106 41-146 11-116 (140)
93 PF12718 Tropomyosin_1: Tropom 79.9 77 0.0017 32.6 17.5 49 298-346 16-64 (143)
94 COG4942 Membrane-bound metallo 79.1 1.6E+02 0.0034 35.7 28.5 28 160-187 88-115 (420)
95 PF05701 WEMBL: Weak chloropla 78.5 1.7E+02 0.0038 35.9 51.6 49 323-371 298-346 (522)
96 COG2433 Uncharacterized conser 78.3 33 0.00071 42.6 13.8 13 112-124 390-402 (652)
97 PF13870 DUF4201: Domain of un 77.9 94 0.002 32.5 19.5 88 65-152 20-112 (177)
98 PF13166 AAA_13: AAA domain 77.4 2E+02 0.0043 36.0 22.8 28 34-61 256-290 (712)
99 COG5185 HEC1 Protein involved 76.8 1.9E+02 0.0041 35.4 32.8 100 167-280 331-433 (622)
100 PF15254 CCDC14: Coiled-coil d 76.6 2.4E+02 0.0052 36.5 20.7 55 21-76 358-412 (861)
101 KOG0977 Nuclear envelope prote 76.1 2.1E+02 0.0046 35.6 34.0 133 103-235 92-231 (546)
102 COG4487 Uncharacterized protei 76.1 1.9E+02 0.0041 35.1 20.9 23 325-347 196-218 (438)
103 PF01576 Myosin_tail_1: Myosin 75.9 0.87 1.9E-05 58.2 0.0 39 86-124 22-60 (859)
104 PF04949 Transcrip_act: Transc 75.4 1.1E+02 0.0024 32.1 15.6 62 341-402 59-124 (159)
105 COG4942 Membrane-bound metallo 73.6 2.2E+02 0.0047 34.5 30.1 38 180-217 38-75 (420)
106 PF10186 Atg14: UV radiation r 73.1 1.5E+02 0.0033 32.5 18.4 14 641-654 265-278 (302)
107 PF10168 Nup88: Nuclear pore c 72.4 2.6E+02 0.0057 35.9 20.1 28 243-270 639-666 (717)
108 COG4372 Uncharacterized protei 71.3 2.3E+02 0.0051 34.0 28.1 22 621-642 373-394 (499)
109 KOG0946 ER-Golgi vesicle-tethe 71.2 3.3E+02 0.0071 35.6 27.7 33 277-309 729-761 (970)
110 PF12072 DUF3552: Domain of un 71.0 1.6E+02 0.0034 31.8 16.3 22 215-236 106-127 (201)
111 COG3883 Uncharacterized protei 68.8 2.2E+02 0.0047 32.6 22.3 69 68-136 38-106 (265)
112 KOG0963 Transcription factor/C 68.8 3.2E+02 0.007 34.5 36.2 86 283-374 183-268 (629)
113 PF10186 Atg14: UV radiation r 67.2 2E+02 0.0043 31.6 18.5 38 244-281 71-108 (302)
114 smart00787 Spc7 Spc7 kinetocho 66.9 1.9E+02 0.0041 33.5 15.9 25 211-235 178-202 (312)
115 PF05911 DUF869: Plant protein 65.9 4.1E+02 0.0088 34.7 24.7 146 112-269 612-759 (769)
116 smart00787 Spc7 Spc7 kinetocho 65.7 2.6E+02 0.0057 32.4 18.9 17 194-210 182-198 (312)
117 PF10234 Cluap1: Clusterin-ass 65.4 1.7E+02 0.0036 33.5 14.6 96 320-415 158-257 (267)
118 KOG0804 Cytoplasmic Zn-finger 64.5 2.8E+02 0.006 33.9 16.7 19 306-324 328-346 (493)
119 PF05622 HOOK: HOOK protein; 64.0 5.6 0.00012 50.0 3.4 19 179-197 307-325 (713)
120 PF13863 DUF4200: Domain of un 63.9 1.5E+02 0.0032 28.9 15.6 97 167-266 8-104 (126)
121 PRK05563 DNA polymerase III su 63.7 72 0.0016 39.4 12.6 74 758-834 211-284 (559)
122 TIGR00634 recN DNA repair prot 63.4 3.7E+02 0.0079 33.3 24.1 13 734-746 548-560 (563)
123 PF13851 GAS: Growth-arrest sp 63.0 2.3E+02 0.0049 30.8 20.8 162 126-301 29-201 (201)
124 PF10498 IFT57: Intra-flagella 62.8 2.7E+02 0.0058 33.0 16.3 101 180-297 220-320 (359)
125 PRK14950 DNA polymerase III su 62.0 2.6E+02 0.0056 34.8 16.9 82 758-842 212-293 (585)
126 KOG0804 Cytoplasmic Zn-finger 61.5 2.5E+02 0.0054 34.3 15.7 31 214-246 327-357 (493)
127 PRK10869 recombination and rep 58.1 4.5E+02 0.0098 32.6 24.0 9 534-542 452-460 (553)
128 PF05557 MAD: Mitotic checkpoi 58.0 8.3 0.00018 48.5 3.4 40 167-206 179-218 (722)
129 PRK04778 septation ring format 57.8 4.6E+02 0.0099 32.6 47.2 22 13-34 34-55 (569)
130 PRK14965 DNA polymerase III su 56.6 64 0.0014 40.0 10.5 79 759-840 212-290 (576)
131 PRK00409 recombination and DNA 53.6 2.3E+02 0.005 36.7 14.9 59 217-275 511-569 (782)
132 COG1340 Uncharacterized archae 53.3 4.2E+02 0.0091 30.8 35.7 19 420-438 240-258 (294)
133 PF08317 Spc7: Spc7 kinetochor 53.3 4.1E+02 0.0089 30.7 20.6 38 176-213 212-249 (325)
134 PF02994 Transposase_22: L1 tr 52.5 37 0.0008 39.9 7.2 15 581-595 257-271 (370)
135 COG3883 Uncharacterized protei 52.4 4.1E+02 0.0089 30.4 22.6 73 164-236 36-108 (265)
136 PF12325 TMF_TATA_bd: TATA ele 51.8 2.7E+02 0.0059 28.2 13.5 56 246-301 64-119 (120)
137 PF10168 Nup88: Nuclear pore c 51.5 6.4E+02 0.014 32.6 18.1 16 183-198 557-572 (717)
138 KOG0980 Actin-binding protein 51.3 7.2E+02 0.016 32.9 28.9 17 715-731 787-803 (980)
139 PF15066 CAGE1: Cancer-associa 50.0 5.8E+02 0.013 31.5 21.5 36 259-294 392-427 (527)
140 PF10498 IFT57: Intra-flagella 49.3 4.4E+02 0.0095 31.3 15.2 101 201-318 220-320 (359)
141 KOG1853 LIS1-interacting prote 47.5 4.8E+02 0.011 29.8 17.5 52 202-256 35-86 (333)
142 PRK00409 recombination and DNA 47.5 3.9E+02 0.0085 34.7 15.6 68 168-235 504-571 (782)
143 PF04111 APG6: Autophagy prote 47.3 2.3E+02 0.0049 32.8 12.3 10 719-728 292-301 (314)
144 KOG4673 Transcription factor T 46.2 7.8E+02 0.017 31.9 33.3 112 164-285 400-512 (961)
145 PRK12705 hypothetical protein; 46.1 6.8E+02 0.015 31.1 18.9 15 606-620 327-341 (508)
146 PF05278 PEARLI-4: Arabidopsis 46.1 4.4E+02 0.0095 30.3 13.9 31 418-448 231-261 (269)
147 KOG4786 Ubinuclein, nuclear pr 44.7 29 0.00062 43.7 4.8 11 1001-1011 980-990 (1136)
148 KOG1003 Actin filament-coating 43.1 5E+02 0.011 28.7 24.0 32 107-138 8-39 (205)
149 PF05278 PEARLI-4: Arabidopsis 41.7 3E+02 0.0065 31.5 11.8 23 349-371 201-223 (269)
150 TIGR01069 mutS2 MutS2 family p 40.8 4.5E+02 0.0097 34.2 14.6 56 218-273 507-562 (771)
151 PRK14963 DNA polymerase III su 40.7 4.6E+02 0.01 32.3 14.2 79 758-840 208-286 (504)
152 KOG0249 LAR-interacting protei 40.3 9.7E+02 0.021 31.2 21.6 181 91-289 47-251 (916)
153 KOG4643 Uncharacterized coiled 39.6 1.1E+03 0.024 31.8 47.0 33 89-121 198-230 (1195)
154 PRK14952 DNA polymerase III su 38.7 2.5E+02 0.0053 35.3 11.6 17 882-898 368-384 (584)
155 PF07889 DUF1664: Protein of u 37.8 4.3E+02 0.0094 27.1 11.2 77 333-409 42-118 (126)
156 PF04949 Transcrip_act: Transc 37.8 5.2E+02 0.011 27.4 16.1 22 297-318 103-124 (159)
157 PRK14971 DNA polymerase III su 37.8 5E+02 0.011 32.8 14.1 79 759-840 214-292 (614)
158 PF05529 Bap31: B-cell recepto 37.6 2.2E+02 0.0047 30.1 9.6 69 168-236 120-189 (192)
159 KOG1937 Uncharacterized conser 36.6 9.1E+02 0.02 29.8 34.3 46 167-213 232-277 (521)
160 TIGR01069 mutS2 MutS2 family p 36.5 7E+02 0.015 32.5 15.4 58 175-232 506-563 (771)
161 KOG0980 Actin-binding protein 36.3 1.2E+03 0.026 31.1 27.9 59 207-272 458-516 (980)
162 PF13388 DUF4106: Protein of u 36.1 2E+02 0.0043 33.3 9.3 29 738-766 21-49 (422)
163 KOG0994 Extracellular matrix g 36.1 1.4E+03 0.029 31.7 39.4 24 167-190 1519-1542(1758)
164 KOG1853 LIS1-interacting prote 35.9 7.3E+02 0.016 28.5 19.6 40 241-280 32-71 (333)
165 PRK09039 hypothetical protein; 35.0 8E+02 0.017 28.8 20.1 66 252-320 139-204 (343)
166 PF06160 EzrA: Septation ring 34.5 1E+03 0.022 29.7 42.1 34 412-445 390-423 (560)
167 PF02994 Transposase_22: L1 tr 34.1 83 0.0018 37.0 6.4 8 267-274 143-150 (370)
168 PF06818 Fez1: Fez1; InterPro 34.1 5.7E+02 0.012 28.2 12.1 124 18-141 16-162 (202)
169 PF05911 DUF869: Plant protein 34.1 1.2E+03 0.026 30.6 32.0 207 164-371 90-309 (769)
170 KOG3850 Predicted membrane pro 34.0 2.4E+02 0.0053 33.7 9.8 146 857-1016 102-253 (455)
171 PF07889 DUF1664: Protein of u 33.8 5.4E+02 0.012 26.4 11.5 64 160-223 37-100 (126)
172 KOG1960 Predicted RNA-binding 33.7 50 0.0011 39.3 4.3 25 798-822 285-309 (531)
173 PRK09111 DNA polymerase III su 33.0 7.8E+02 0.017 31.1 14.7 81 758-841 224-304 (598)
174 KOG4364 Chromatin assembly fac 32.7 1E+03 0.022 30.8 15.0 10 831-840 674-683 (811)
175 KOG4360 Uncharacterized coiled 32.1 1.1E+03 0.024 29.5 17.4 105 276-394 195-300 (596)
176 KOG0994 Extracellular matrix g 32.0 1.6E+03 0.034 31.2 38.9 14 98-111 1349-1362(1758)
177 KOG0307 Vesicle coat complex C 32.0 92 0.002 41.1 6.7 31 629-659 571-601 (1049)
178 PF12777 MT: Microtubule-bindi 30.3 9.2E+02 0.02 28.0 20.1 35 50-84 11-45 (344)
179 PF04156 IncA: IncA protein; 28.8 6.9E+02 0.015 26.1 15.2 112 87-219 79-190 (191)
180 PF08614 ATG16: Autophagy prot 28.7 5.5E+02 0.012 27.4 10.9 65 173-237 95-159 (194)
181 COG1382 GimC Prefoldin, chaper 28.6 6.5E+02 0.014 25.7 11.5 88 342-430 17-106 (119)
182 PF07035 Mic1: Colon cancer-as 28.6 81 0.0018 33.4 4.6 67 766-834 46-129 (167)
183 PF10234 Cluap1: Clusterin-ass 28.0 9.7E+02 0.021 27.5 14.4 68 332-399 195-262 (267)
184 PF06476 DUF1090: Protein of u 27.8 2.9E+02 0.0063 27.7 8.0 94 9-112 17-112 (115)
185 KOG0972 Huntingtin interacting 26.9 7E+02 0.015 29.2 11.5 24 273-296 303-326 (384)
186 PF05700 BCAS2: Breast carcino 26.8 6.1E+02 0.013 27.8 11.0 72 338-412 136-207 (221)
187 KOG3859 Septins (P-loop GTPase 26.4 6.6E+02 0.014 29.5 11.3 26 162-187 322-347 (406)
188 PF07271 Cytadhesin_P30: Cytad 25.7 3.8E+02 0.0083 30.8 9.2 11 888-898 117-127 (279)
189 KOG1962 B-cell receptor-associ 25.4 2.5E+02 0.0054 31.2 7.6 41 206-246 156-196 (216)
190 PF10481 CENP-F_N: Cenp-F N-te 25.1 1.1E+03 0.024 27.3 17.4 100 242-348 31-130 (307)
191 PRK12705 hypothetical protein; 24.9 1.4E+03 0.031 28.5 19.3 19 568-586 255-273 (508)
192 PF04849 HAP1_N: HAP1 N-termin 24.8 1.2E+03 0.025 27.4 23.7 205 89-325 62-305 (306)
193 PF10481 CENP-F_N: Cenp-F N-te 24.4 1.2E+03 0.025 27.2 13.9 107 258-371 19-125 (307)
194 KOG1451 Oligophrenin-1 and rel 24.2 1.4E+02 0.0029 37.5 5.8 28 1008-1035 779-807 (812)
195 PF08614 ATG16: Autophagy prot 24.1 8.9E+02 0.019 25.8 11.6 55 164-218 128-182 (194)
196 PF06705 SF-assemblin: SF-asse 24.1 1E+03 0.022 26.3 26.7 57 180-236 128-189 (247)
197 KOG4786 Ubinuclein, nuclear pr 24.0 3.6E+02 0.0077 34.8 9.3 20 882-901 737-756 (1136)
198 PF15188 CCDC-167: Coiled-coil 23.9 2.8E+02 0.0061 26.7 6.7 57 173-229 5-64 (85)
199 COG3416 Uncharacterized protei 23.4 86 0.0019 34.6 3.7 15 882-896 63-77 (233)
200 KOG1962 B-cell receptor-associ 23.3 1E+03 0.022 26.7 11.7 48 181-228 152-199 (216)
201 PRK10869 recombination and rep 22.7 1.6E+03 0.034 28.1 26.5 53 90-150 158-210 (553)
202 KOG2264 Exostosin EXT1L [Signa 22.6 3.4E+02 0.0074 34.1 8.6 30 164-193 112-141 (907)
203 PF09787 Golgin_A5: Golgin sub 22.4 1.5E+03 0.033 27.9 33.3 30 79-108 106-135 (511)
204 PF06008 Laminin_I: Laminin Do 21.8 1.1E+03 0.024 26.1 28.9 64 345-415 171-234 (264)
205 KOG0239 Kinesin (KAR3 subfamil 21.8 1.8E+03 0.039 28.5 17.7 16 857-872 568-583 (670)
206 KOG0992 Uncharacterized conser 21.5 1.7E+03 0.036 28.1 42.0 85 46-150 53-139 (613)
207 PLN02372 violaxanthin de-epoxi 21.4 5.5E+02 0.012 31.3 9.8 26 257-282 379-404 (455)
208 KOG2880 SMAD6 interacting prot 21.4 2.7E+02 0.0058 33.2 7.2 102 875-982 128-236 (424)
209 PF06160 EzrA: Septation ring 21.1 1.7E+03 0.036 27.9 51.9 37 105-141 138-174 (560)
210 KOG0946 ER-Golgi vesicle-tethe 20.2 2.1E+03 0.046 28.8 31.0 34 235-268 729-762 (970)
211 KOG2005 26S proteasome regulat 20.1 2E+03 0.042 28.6 14.4 66 760-840 280-346 (878)
No 1
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=100.00 E-value=2.6e-72 Score=610.15 Aligned_cols=270 Identities=42% Similarity=0.672 Sum_probs=250.1
Q ss_pred hhccccchhhHHHHHHHhhhhhhhhhhhHHHhhhhcCCchhhHHHhhhccCCCCCCCCCccchhhHHHHHhHHHHhhhhh
Q 001601 497 QSCTMITGKNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSS 576 (1046)
Q Consensus 497 ~lC~~mDgkgL~~fl~e~~k~~~~lr~Ev~~ALr~a~DPAkLVLDaLEgFy~~~~k~gd~~~d~~~~RrsCilLLE~L~~ 576 (1046)
++|++|||+||++|+++|+++..++|+|||+||++|||||+||||+|+|||++..+. +.+.+...+||+||+|||+|+.
T Consensus 17 ~lC~~MD~~gL~~fv~~~~k~~~~lr~Ev~~AL~~A~DPAkLVLdai~~f~~~~~~~-~~~~~~~~~r~~cilLLE~L~~ 95 (290)
T PF07899_consen 17 SLCEKMDGKGLRKFVSENRKELASLREEVPAALRCAPDPAKLVLDAIEGFYPPGSKN-KKDSKLVDVRRACILLLEQLMR 95 (290)
T ss_pred HHHHHCCHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCChHHHHHHHHHcccCCcccc-ccCcchhhHHHHHHHHHHHHhh
Confidence 799999999999999999999999999999999999999999999999999998755 5667788999999999999999
Q ss_pred cCCCCChhHHHHHHHHHHHHHHhh-hhccCCcHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhhhhHHHHHHcCccc
Q 001601 577 VTPEINPQVRDEAMKVAGEWKKKM-RVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAE 655 (1046)
Q Consensus 577 isp~is~~VKeeAkkLA~eWK~kl-~~d~enslEalgFLqLLA~yGL~seFD~dEL~~Lv~~va~~rQapeLcraLGl~e 655 (1046)
++|.|+|+||++|++||.+||++| ..++.|++||+|||||||+|||+++||.|||++||..|++|+|+|+||++|||++
T Consensus 96 ~~~~is~~vke~A~~lA~~WK~~l~~~~~~~~lea~gFL~lla~fgi~s~Fd~del~~Lv~~va~~~~a~~L~~sLgl~~ 175 (290)
T PF07899_consen 96 ISPEISPEVKEEAKKLAEEWKSKLDGVNNENSLEALGFLQLLAAFGIVSEFDEDELLKLVVSVARRKQAPELCRSLGLSD 175 (290)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcchHhhHHHHHHcCchh
Confidence 999999999999999999999999 7888999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccchhhhhhhhccccCChhHHHHhhhcCCCchhhHHHHHhhhhccCCCCcchhhhHhHHHHHHhhhhcCCC
Q 001601 656 KAHGLQCSTTREARSCLSLLNKHDLGHNEVLQLLHLAPDPAMFVLDFIQHWKSQGTGFEEDNVKCCILVLEKLKEVLPIM 735 (1046)
Q Consensus 656 Kipg~~~s~~~~~~~~~~l~~~h~~~~~Ev~~AL~~a~DPAkLVLDaieg~~~~~~g~~~~~~rsCilLLE~L~~i~p~i 735 (1046)
||||++ ..|.++
T Consensus 176 k~~d~V----------~~LI~~---------------------------------------------------------- 187 (290)
T PF07899_consen 176 KMPDIV----------EKLIKK---------------------------------------------------------- 187 (290)
T ss_pred hhHHHH----------HHHHHC----------------------------------------------------------
Confidence 999962 111110
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHhHhccccccChHHHHHHHHHhhcccchHHHHHHhCccccchhhh
Q 001601 736 NPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVATIR 815 (1046)
Q Consensus 736 s~~Vke~A~klA~~WK~kl~~~~~~slEalaFLqLLaafGL~seFd~dEL~kLv~~va~rkqapeLcrsLGL~~~idAvr 815 (1046)
+.+|+||+
T Consensus 188 ------------------------------------------------------------------------g~~ieAv~ 195 (290)
T PF07899_consen 188 ------------------------------------------------------------------------GKQIEAVR 195 (290)
T ss_pred ------------------------------------------------------------------------CCccchHH
Confidence 12799999
Q ss_pred HHhhhcccccCCCchhHHHHHHHhhHhh---hhcCCCCchhhhhhhHHHHHHHHHHHHHhhhcccccccchHHHHHHHHH
Q 001601 816 FICAFKLTDIAKPEAIFKQYLDDNISDI---HRKGNNSSDAKVKAMDFEVNALTFLIECFKENKLESSLLIENIKQRIVQ 892 (1046)
Q Consensus 816 fi~af~Lv~kFpPVpLLK~Yl~d~Kk~~---~~kg~ns~~aq~~a~~kEl~aLraVIKcIee~KLEse~p~~~L~kRI~q 892 (1046)
|||+|||+++|||||||++||+++|++. ..+|+++ .++++|+++|++||++|||||++|||||+||+++|++||.|
T Consensus 196 fi~~f~L~dkfpPv~lLk~yl~~~k~~~~~~~~~~~~~-~a~~ea~~kel~aL~~vikcIee~kLes~~~~~~l~kri~~ 274 (290)
T PF07899_consen 196 FIYAFGLVDKFPPVPLLKSYLEDSKKAAKRIRKKGNSS-EAQNEANEKELAALKSVIKCIEEHKLESEFPLEPLQKRIEQ 274 (290)
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHHHhccccccChHHHHHHHHH
Confidence 9999999999999999999999999864 3455555 99999999999999999999999999999999999999999
Q ss_pred HHhhhhhhcccCCCCC
Q 001601 893 LEMAKADCRRHSTPAP 908 (1046)
Q Consensus 893 LEk~ka~kkr~~~~~~ 908 (1046)
||++++++||++++++
T Consensus 275 Lek~~~~~kr~~~~~~ 290 (290)
T PF07899_consen 275 LEKQKADRKRAAEAAK 290 (290)
T ss_pred HHHHHHHHhhcccccC
Confidence 9999999999987653
No 2
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=100.00 E-value=2.9e-36 Score=328.62 Aligned_cols=161 Identities=40% Similarity=0.575 Sum_probs=150.6
Q ss_pred CChhHHHHhhhcCCCchhhHHHHHhhhhccCCC-----CcchhhhHhHHHHHHhhhhcCCCChhHHHHHHHHHHHHHhhc
Q 001601 680 LGHNEVLQLLHLAPDPAMFVLDFIQHWKSQGTG-----FEEDNVKCCILVLEKLKEVLPIMNPRVKGEAMKLAVEWKTKM 754 (1046)
Q Consensus 680 ~~~~Ev~~AL~~a~DPAkLVLDaieg~~~~~~g-----~~~~~~rsCilLLE~L~~i~p~is~~Vke~A~klA~~WK~kl 754 (1046)
-.++||++||++|||||+||||||+|||+...+ ...++||+||+|||+|+.++|.++|+||++|++||.+||++|
T Consensus 40 ~lr~Ev~~AL~~A~DPAkLVLdai~~f~~~~~~~~~~~~~~~~r~~cilLLE~L~~~~~~is~~vke~A~~lA~~WK~~l 119 (290)
T PF07899_consen 40 SLREEVPAALRCAPDPAKLVLDAIEGFYPPGSKNKKDSKLVDVRRACILLLEQLMRISPEISPEVKEEAKKLAEEWKSKL 119 (290)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHcccCCccccccCcchhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999999987653 224568999999999999999999999999999999999999
Q ss_pred -CCCCCchhHHHHHHHHHhHhccccccChHHHHHHHHHhhcccchHHHHHHhCccc--------cchhhhHHhhhccccc
Q 001601 755 -GVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTD--------IVATIRFICAFKLTDI 825 (1046)
Q Consensus 755 -~~~~~~slEalaFLqLLaafGL~seFd~dEL~kLv~~va~rkqapeLcrsLGL~~--------~idAvrfi~af~Lv~k 825 (1046)
+.++++++||+||||||++|||+++||.|||++||.+||+|+|||+||++|||++ .|.-+++|.|+.++..
T Consensus 120 ~~~~~~~~lea~gFL~lla~fgi~s~Fd~del~~Lv~~va~~~~a~~L~~sLgl~~k~~d~V~~LI~~g~~ieAv~fi~~ 199 (290)
T PF07899_consen 120 DGVNNENSLEALGFLQLLAAFGIVSEFDEDELLKLVVSVARRKQAPELCRSLGLSDKMPDIVEKLIKKGKQIEAVRFIYA 199 (290)
T ss_pred HhcccCCCHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcchHhhHHHHHHcCchhhhHHHHHHHHHCCCccchHHHHHH
Confidence 8888999999999999999999999999999999999999999999999999999 7889999999999999
Q ss_pred CCCchhHHHHHHHhhH
Q 001601 826 AKPEAIFKQYLDDNIS 841 (1046)
Q Consensus 826 FpPVpLLK~Yl~d~Kk 841 (1046)
|..+.-+.+ +...|.
T Consensus 200 f~L~dkfpP-v~lLk~ 214 (290)
T PF07899_consen 200 FGLVDKFPP-VPLLKS 214 (290)
T ss_pred HcCCCCCCC-HHHHHH
Confidence 999998888 777776
No 3
>PRK02224 chromosome segregation protein; Provisional
Probab=99.10 E-value=2.1e-05 Score=97.99 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 001601 164 LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKL 238 (1046)
Q Consensus 164 ~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkl 238 (1046)
++..+.++...+.....++..+.+.++...+.+...++.+..+...+.++..+++.-+..+......+...+.++
T Consensus 319 l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el 393 (880)
T PRK02224 319 LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEI 393 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555544444444444444444444444444444444444444444444444433
No 4
>PRK02224 chromosome segregation protein; Provisional
Probab=98.97 E-value=0.00052 Score=85.83 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=5.9
Q ss_pred HHHHhhhhhHHHHHHH
Q 001601 294 MKKYFNDIELKEREFN 309 (1046)
Q Consensus 294 ~e~~~kel~~Ke~e~~ 309 (1046)
++.....++-....+.
T Consensus 525 ~~~~~e~le~~~~~~~ 540 (880)
T PRK02224 525 IAERRETIEEKRERAE 540 (880)
T ss_pred HHHHHHHHHhHHHHHH
Confidence 3333333333333333
No 5
>PRK01156 chromosome segregation protein; Provisional
Probab=98.70 E-value=0.0036 Score=78.80 Aligned_cols=10 Identities=20% Similarity=0.647 Sum_probs=6.2
Q ss_pred CCCchhhHHH
Q 001601 692 APDPAMFVLD 701 (1046)
Q Consensus 692 a~DPAkLVLD 701 (1046)
+.+|.-++||
T Consensus 823 ~~~~~~lilD 832 (895)
T PRK01156 823 NNDKSLLIMD 832 (895)
T ss_pred ccCCCeEEEe
Confidence 4566666666
No 6
>PRK01156 chromosome segregation protein; Provisional
Probab=98.66 E-value=0.0049 Score=77.67 Aligned_cols=6 Identities=0% Similarity=0.019 Sum_probs=2.2
Q ss_pred HHHHHH
Q 001601 70 LDQRAK 75 (1046)
Q Consensus 70 le~r~k 75 (1046)
++.+.+
T Consensus 261 le~~l~ 266 (895)
T PRK01156 261 AESDLS 266 (895)
T ss_pred HHHHHH
Confidence 333333
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.61 E-value=0.0016 Score=82.94 Aligned_cols=34 Identities=12% Similarity=0.154 Sum_probs=13.1
Q ss_pred HHhhhhhhHHHHHHHHhHhhHHHHHhHHHHHHHH
Q 001601 76 EIESKESDLVLAERRIKECNFELACKEKQLELVR 109 (1046)
Q Consensus 76 ~~e~~e~~l~l~e~~~ee~~~ele~Kek~l~~~r 109 (1046)
+++.+..++..++..+..+..++..-+.++...+
T Consensus 682 ~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~ 715 (1164)
T TIGR02169 682 RLEGLKRELSSLQSELRRIENRLDELSQELSDAS 715 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.59 E-value=0.0014 Score=83.26 Aligned_cols=10 Identities=20% Similarity=0.238 Sum_probs=5.6
Q ss_pred hhhhcccccc
Q 001601 1012 HIASNHLRVR 1021 (1046)
Q Consensus 1012 ~~~~~~~~~~ 1021 (1046)
.+|..+++|.
T Consensus 1141 ~~~d~~~~~~ 1150 (1164)
T TIGR02169 1141 EYADRAIGVT 1150 (1164)
T ss_pred HhcceeEeEE
Confidence 3555666654
No 9
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.56 E-value=0.0097 Score=78.29 Aligned_cols=138 Identities=12% Similarity=0.159 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHH---HHHHHHhhhhh
Q 001601 164 LENLIKDFCEQIELKEKDLRKIR--SSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEI---KKSIIQCETKL 238 (1046)
Q Consensus 164 ~~~~i~e~~~el~~ke~el~~~~--~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~---~k~ie~~~kkl 238 (1046)
+...+..+..+++..+.++.... ..++....++.+.+..++.+..+++.+..+.+...+++... ..++....-++
T Consensus 797 ~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl 876 (1311)
T TIGR00606 797 FQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQI 876 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555554444444222 14455555666666666666666666666666666665555 33333333333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 001601 239 DCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREF 308 (1046)
Q Consensus 239 e~k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~e~~~kel~~Ke~e~ 308 (1046)
.. .......+..+|+-....++....++..-..+++....++...+.++++.......++.++
T Consensus 877 ~~-------~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 939 (1311)
T TIGR00606 877 GT-------NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKA 939 (1311)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 1222233333333334444444444444444444444444444444444444444443333
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.55 E-value=0.015 Score=78.00 Aligned_cols=51 Identities=22% Similarity=0.233 Sum_probs=33.4
Q ss_pred heecchhchHHHHHHhHHHH--HHhhhhhhHHHHHHHHHHHHHhhhhhhHHHH
Q 001601 37 NFTVQWKDLEEHLDISMKSL--EKQSNDADSKIRLLDQRAKEIESKESDLVLA 87 (1046)
Q Consensus 37 ~~~l~w~~le~h~~s~~~~~--e~~~~~~~~k~~~le~r~k~~e~~e~~l~l~ 87 (1046)
.=+.+|=.|-.+++-.-..- +.+.....-..+.+.+.+...|+...+++..
T Consensus 815 lr~w~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~ 867 (1930)
T KOG0161|consen 815 LRTWPWWRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRKELEEK 867 (1930)
T ss_pred hccCHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788999999887665554 4444444445577777777777766666533
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.53 E-value=0.0049 Score=78.19 Aligned_cols=7 Identities=43% Similarity=0.619 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 001601 402 YLKQLKE 408 (1046)
Q Consensus 402 ~~kele~ 408 (1046)
+++.+..
T Consensus 973 ~i~~lg~ 979 (1179)
T TIGR02168 973 RLKRLEN 979 (1179)
T ss_pred HHHHHHH
Confidence 3333333
No 12
>PRK03918 chromosome segregation protein; Provisional
Probab=98.50 E-value=0.011 Score=74.03 Aligned_cols=9 Identities=22% Similarity=0.552 Sum_probs=5.3
Q ss_pred CCchhhHHH
Q 001601 693 PDPAMFVLD 701 (1046)
Q Consensus 693 ~DPAkLVLD 701 (1046)
.+|.-+|||
T Consensus 811 ~~~~~lilD 819 (880)
T PRK03918 811 GNIPLLILD 819 (880)
T ss_pred CCCCeEEEe
Confidence 455556666
No 13
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.48 E-value=0.019 Score=75.71 Aligned_cols=131 Identities=17% Similarity=0.171 Sum_probs=61.1
Q ss_pred HhhHHHHHHhHHHHHHhhhchhheecchhchHHHHHHhHHHHHHh---hhhh----hHHHHHHHHHHHHHhhhhhhHHHH
Q 001601 15 ESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQ---SNDA----DSKIRLLDQRAKEIESKESDLVLA 87 (1046)
Q Consensus 15 ~~k~e~~~~~~~~~~~qas~~l~~~l~w~~le~h~~s~~~~~e~~---~~~~----~~k~~~le~r~k~~e~~e~~l~l~ 87 (1046)
+-+-..|++-++.+..+|.+..-+.+-=++|.+.-.+...-+... +..+ ..+ ..+ .+++.++..++..+
T Consensus 514 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~l---~~~~~~~~~el~~~ 589 (1311)
T TIGR00606 514 DRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNK-KQL---EDWLHSKSKEINQT 589 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-HHH---HHHHHHHHHHHHHH
Confidence 344456667777777777777777776666655554443332221 1111 001 111 23333333344444
Q ss_pred HHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhh------hhHHHHHHHHHHhhhhhhhhhH
Q 001601 88 ERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELN------LVKKSVEEWLEKLDLKMKEVGL 149 (1046)
Q Consensus 88 e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~------~~~~~veE~~~e~~~Ke~el~~ 149 (1046)
..++....+++..-+..+..++..+..+..++.+.+..|. .....|.++..+++.-...++.
T Consensus 590 ~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~~~~~~~~~~L~~~~~~l~~~~~~~~~ 657 (1311)
T TIGR00606 590 RDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAM 657 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444443333333 3444556666666555555443
No 14
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.40 E-value=0.034 Score=74.79 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=23.6
Q ss_pred HHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHH
Q 001601 96 FELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLE 138 (1046)
Q Consensus 96 ~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~ 138 (1046)
.+++..++.++.....+.+...|....+.++..+.+.+..|..
T Consensus 936 ~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e 978 (1930)
T KOG0161|consen 936 QEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDE 978 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444555556666666666666666655444
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.28 E-value=0.011 Score=76.80 Aligned_cols=17 Identities=24% Similarity=0.610 Sum_probs=11.3
Q ss_pred HHHHHhHHHHHHHHHHH
Q 001601 411 KQFHSLKEALDERWQDL 427 (1046)
Q Consensus 411 kefeskek~leer~Kel 427 (1046)
.-|....+.|..-.+.|
T Consensus 1013 ~~f~~In~~F~~if~~L 1029 (1163)
T COG1196 1013 ETFDKINENFSEIFKEL 1029 (1163)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 35666667777777776
No 16
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.26 E-value=0.018 Score=72.21 Aligned_cols=133 Identities=25% Similarity=0.333 Sum_probs=66.5
Q ss_pred HhhhhhhhhhHHHhhhh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001601 139 KLDLKMKEVGLVEKSND-----KSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDY 213 (1046)
Q Consensus 139 e~~~Ke~el~~~~~~~~-----k~~~d~~~~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~ 213 (1046)
++.+|.-+|....++++ +.+.|...+...++++.-+|+.+..-+......|....+. ...+-...+..+.++
T Consensus 716 ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~---~~d~~~~re~rlkdl 792 (1174)
T KOG0933|consen 716 QLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKK---MKDAKANRERRLKDL 792 (1174)
T ss_pred HHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHhhhhhHhHHHHH
Confidence 34444444444444432 1123555577777777778877777666665555444433 234555555556666
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 214 AEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVR 274 (1046)
Q Consensus 214 ~~ElE~KeK~~e~~~k~ie~~~kkle~k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~ 274 (1046)
.++|.......++-.++.+..+...+.-..|.+..+..+.-...+++.++.++++...++.
T Consensus 793 ~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~ 853 (1174)
T KOG0933|consen 793 EKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELG 853 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655555555554444444433333333333333333333444444444443333333
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.21 E-value=0.034 Score=72.59 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=10.1
Q ss_pred cCCcHHHHHHHHHHHhhcCCC
Q 001601 604 EDNSLEVLGFLHLLAAYGLGP 624 (1046)
Q Consensus 604 ~enslEalgFLqLLA~yGL~s 624 (1046)
|+.+|-||+||-=+=.|.=+|
T Consensus 1070 GEKsLtAlAllFAi~~~~PaP 1090 (1163)
T COG1196 1070 GEKSLTALALLFAIQKYRPAP 1090 (1163)
T ss_pred cHHHHHHHHHHHHHHhhCCCC
Confidence 345566666654443333333
No 18
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.84 E-value=0.23 Score=63.65 Aligned_cols=103 Identities=20% Similarity=0.269 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 001601 206 LQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEE 285 (1046)
Q Consensus 206 ~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~ 285 (1046)
..+.+++++.++..+-.++-.....++..+.+++...+.+. .+++.. +++++.-.+.+...++-.++...
T Consensus 371 ~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~---~k~kKl-------eke~ek~~~~~~e~e~~pe~~~~ 440 (1293)
T KOG0996|consen 371 VKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLT---SKIKKL-------EKEIEKARRKKSELEKAPEKARI 440 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-------HHHHHHHHhhHHHHHhCchhhHh
Confidence 33446666666666666676777777777777754444433 333333 34444445555555555555555
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001601 286 KLDAMKEEMKKYFNDIELKEREFNGIRKCIEKR 318 (1046)
Q Consensus 286 e~~~~e~e~e~~~kel~~Ke~e~~~~~K~ie~r 318 (1046)
+...++.+++.+...++--++++.+++..+..+
T Consensus 441 ~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~ 473 (1293)
T KOG0996|consen 441 EIQKCQTEIEQLEELLEKEERELDEILDSLKQE 473 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 566666666666666666666777776666664
No 19
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.58 E-value=0.085 Score=57.30 Aligned_cols=128 Identities=27% Similarity=0.215 Sum_probs=78.9
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001601 330 KCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEK 409 (1046)
Q Consensus 330 ~~~~~e~e~k~~e~e~k~kEL~s~eK~~~~~~kEle~Kekel~~i~~~~~e~~kelE~KEKele~~~k~~e~~~kele~K 409 (1046)
+......+.+-..++.++++....-...+.+..|...+-.-++.-..........++.+-++|+.....+...++.++..
T Consensus 84 E~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~ 163 (237)
T PF00261_consen 84 ENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEAS 163 (237)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhh
Confidence 33444444445555555555555555555555555555555544444445556677777777777777777777777777
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 410 EKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVED 457 (1046)
Q Consensus 410 ekefeskek~leer~KelesKek~fe~rvKE~elKEkq~e~~~~~~e~ 457 (1046)
+.+....+..++.+++.|.-+-+..+.|....+-....++..-..++.
T Consensus 164 ~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~ 211 (237)
T PF00261_consen 164 EEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLED 211 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777776766666655555544433333
No 20
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.56 E-value=0.78 Score=61.79 Aligned_cols=190 Identities=20% Similarity=0.237 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhh-------------hhh----------
Q 001601 185 IRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKL-------------DCK---------- 241 (1046)
Q Consensus 185 ~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkl-------------e~k---------- 241 (1046)
....|...+++.+.=.+.+.=+..+..-+.-...+-.+.++..+..+-.++... =.+
T Consensus 1151 L~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~Es 1230 (1822)
T KOG4674|consen 1151 LQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRES 1230 (1822)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHh
Confidence 444444455444443444443333334444444554555555555555554431 111
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH---HHhhhhhHH-----HHHHH
Q 001601 242 ----KKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMK---KYFNDIELK-----EREFN 309 (1046)
Q Consensus 242 ----~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~e---~~~kel~~K-----e~e~~ 309 (1046)
++++....+.+.++.++++..+..+.-.+-++..-..++...+.++..++.++. .+..+|..+ =..++
T Consensus 1231 N~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~ 1310 (1822)
T KOG4674|consen 1231 NKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYE 1310 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Confidence 333334444444455555555555544444444444444444445554444442 233344444 22344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHH
Q 001601 310 GIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVI 374 (1046)
Q Consensus 310 ~~~K~ie~r~kELe~KEkql~~~~~e~e~k~~e~e~k~kEL~s~eK~~~~~~kEle~Kekel~~i 374 (1046)
.....|+.-..+|+.|+++..+.-+.+....+.+..++++|.--+.....++++++.+-..|..-
T Consensus 1311 kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~ 1375 (1822)
T KOG4674|consen 1311 KLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAA 1375 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566777777777777777777777777777777777777777777777666666433
No 21
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.47 E-value=0.17 Score=55.04 Aligned_cols=84 Identities=21% Similarity=0.094 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHHHHH
Q 001601 320 QELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMA 399 (1046)
Q Consensus 320 kELe~KEkql~~~~~e~e~k~~e~e~k~kEL~s~eK~~~~~~kEle~Kekel~~i~~~~~e~~kelE~KEKele~~~k~~ 399 (1046)
.+...|=..++.-....+.+-..++.++.+|+..=+.++..++.++..+.+....++.|...+..|+.+-++.+.+....
T Consensus 116 ~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~a 195 (237)
T PF00261_consen 116 EEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFA 195 (237)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444445555555566666666666666666666666665555555555555555545444444443
Q ss_pred HHHH
Q 001601 400 IGYL 403 (1046)
Q Consensus 400 e~~~ 403 (1046)
+.++
T Consensus 196 E~~v 199 (237)
T PF00261_consen 196 ERRV 199 (237)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 22
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.46 E-value=0.51 Score=57.06 Aligned_cols=99 Identities=20% Similarity=0.271 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhh
Q 001601 164 LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKE---KHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDC 240 (1046)
Q Consensus 164 ~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke---~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkle~ 240 (1046)
++.++..+..|++.|+.|...++..+....+.++-.. ..++.+-.+.+++..+|.-=..++|.+++++
T Consensus 292 ~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~v--------- 362 (581)
T KOG0995|consen 292 MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEV--------- 362 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 5556777777777777777777777766666654431 3334444444444444444444444443333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 241 KKKELELTQTSIIELSLELHLEEEKLESLQRIVRLR 276 (1046)
Q Consensus 241 k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r 276 (1046)
=....+++...++++.+=.++.+..+.|.+.
T Consensus 363 -----w~~~l~~~~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 363 -----WELKLEIEDFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred -----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555666666667777777777666
No 23
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.45 E-value=0.2 Score=63.93 Aligned_cols=67 Identities=10% Similarity=0.302 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHhhhhhhhhhHHHhhhhhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 128 LVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLV-------DQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEK 194 (1046)
Q Consensus 128 ~~~~~veE~~~e~~~Ke~el~~~~~~~~k~~~-------d~~~~~~~i~e~~~el~~ke~el~~~~~~Ie~~~k 194 (1046)
++.+.+..+...|.-++..+-.....+++.+. +++.++..|+++..+-+....|+...+..+...+.
T Consensus 278 ~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~r 351 (1074)
T KOG0250|consen 278 EVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRR 351 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444333332 22334445555555555555555444444444443
No 24
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.36 E-value=0.92 Score=57.79 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=29.4
Q ss_pred HHHHHHhhhh--ccCCcHHHHHHHHHHHhhcCCCCCChHHH
Q 001601 593 AGEWKKKMRV--AEDNSLEVLGFLHLLAAYGLGPSFDGIEL 631 (1046)
Q Consensus 593 A~eWK~kl~~--d~enslEalgFLqLLA~yGL~seFD~dEL 631 (1046)
..-||..+.. ++.-||-||....=+-.|.=+|-|=-||+
T Consensus 1073 G~iWKeSL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEV 1113 (1174)
T KOG0933|consen 1073 GGIWKESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEV 1113 (1174)
T ss_pred CccHHHHHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhh
Confidence 3469999974 34578999998777777888888766665
No 25
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.30 E-value=1.2 Score=57.76 Aligned_cols=54 Identities=24% Similarity=0.315 Sum_probs=33.3
Q ss_pred HHHHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHHH
Q 001601 86 LAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEK 139 (1046)
Q Consensus 86 l~e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~e 139 (1046)
-++++++.-+++..+-++-.+..++.|++|..|+..-.+.+..-+..+.+-...
T Consensus 416 Kleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~ 469 (1293)
T KOG0996|consen 416 KLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDS 469 (1293)
T ss_pred HHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666677777777776666655555555555544443
No 26
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.13 E-value=1.2 Score=54.80 Aligned_cols=161 Identities=20% Similarity=0.233 Sum_probs=85.5
Q ss_pred HHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHHHhhhhhhhhhHHHh------------------hhhhhhhHHHHHH
Q 001601 104 QLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEK------------------SNDKSLVDQRRLE 165 (1046)
Q Consensus 104 ~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~e~~~Ke~el~~~~~------------------~~~k~~~d~~~~~ 165 (1046)
+|..++-..++|..=-..-+..|.-..+-+.....+-+++..++..+.. .+..++--+...+
T Consensus 297 eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~e 376 (786)
T PF05483_consen 297 ELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNE 376 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4555555566666544555555555555555444444444444433211 1111121223366
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 001601 166 NLIKDFCEQIELKEKDLRKIRS-------SIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKL 238 (1046)
Q Consensus 166 ~~i~e~~~el~~ke~el~~~~~-------~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkl 238 (1046)
+.+.-++.+|..|..+|+.|.+ .++...+.|..+++ +-.-.+.++.++++|..++.++.-. |-.+++++
T Consensus 377 d~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qk-ll~ekk~~eki~E~lq~~eqel~~l---lq~~ekev 452 (786)
T PF05483_consen 377 DQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQK-LLDEKKQFEKIAEELQGTEQELTGL---LQIREKEV 452 (786)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhHH
Confidence 6777788888888888887765 34444555554443 2222233555666666666665443 44455555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 239 DCKKKELELTQTSIIELSLELHLEEEKLES 268 (1046)
Q Consensus 239 e~k~kEl~~~~~~i~e~~kele~kEkqle~ 268 (1046)
.--.-.|..+...=..+.++.+..+.+|+.
T Consensus 453 ~dLe~~l~~~~~~eq~yskQVeeLKtELE~ 482 (786)
T PF05483_consen 453 HDLEIQLTTIKESEQHYSKQVEELKTELEQ 482 (786)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444555555555555555666666666654
No 27
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.04 E-value=1.8 Score=54.90 Aligned_cols=73 Identities=23% Similarity=0.256 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 001601 166 NLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKL 238 (1046)
Q Consensus 166 ~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkl 238 (1046)
..|-.|--+++++..++..++.+|++..-.|..++.|-.-+...++.+.-+|+.|..+++.....++......
T Consensus 301 ~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~ 373 (775)
T PF10174_consen 301 SELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEK 373 (775)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677778888888888999999999999999999999999999998888888888877766665554443
No 28
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.95 E-value=2.2 Score=54.51 Aligned_cols=101 Identities=22% Similarity=0.237 Sum_probs=57.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhHHHhHHHHHHHHH
Q 001601 290 MKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKK 369 (1046)
Q Consensus 290 ~e~e~e~~~kel~~Ke~e~~~~~K~ie~r~kELe~KEkql~~~~~e~e~k~~e~e~k~kEL~s~eK~~~~~~kEle~Kek 369 (1046)
+-.+++++--.+...-.+-.-+++.++.=..+|+.+-.+++.+...+. +...++.++...-.++.....|+-.+++
T Consensus 395 ir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~----e~~~r~~~~~~~~~~~k~~~del~~~Rk 470 (1200)
T KOG0964|consen 395 IRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSIN----ETKGRMEEFDAENTELKRELDELQDKRK 470 (1200)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh----hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333334344455555544555555555554444444 5667777887778888888888888888
Q ss_pred HHHHHHhHHHHHhhhhhhhHHHHHHHHH
Q 001601 370 HLCVIENSAAELSDECESNELELDLIQT 397 (1046)
Q Consensus 370 el~~i~~~~~e~~kelE~KEKele~~~k 397 (1046)
.+ |..-..+...++..+..+...++
T Consensus 471 ~l---WREE~~l~~~i~~~~~dl~~~~~ 495 (1200)
T KOG0964|consen 471 EL---WREEKKLRSLIANLEEDLSRAEK 495 (1200)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88 65444444444444444444443
No 29
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=2 Score=53.55 Aligned_cols=119 Identities=17% Similarity=0.233 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001601 261 LEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELK----EREFNGIRKCIEKRSQELTLKEKQLKCVQESL 336 (1046)
Q Consensus 261 ~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~e~~~kel~~K----e~e~~~~~K~ie~r~kELe~KEkql~~~~~e~ 336 (1046)
+|.++-+..+. ++.+.++|.-..+-|..+-.++..++-|+++. --+++++.+.++.++.|...+.-++++.+..+
T Consensus 424 Qk~reqe~iv~-~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl 502 (1118)
T KOG1029|consen 424 QKNREQEWIVY-LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKL 502 (1118)
T ss_pred hhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443333 55666666555555555555666666666554 34788889999998888877777777766655
Q ss_pred ---hhhhhHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhHHHH
Q 001601 337 ---EGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAE 380 (1046)
Q Consensus 337 ---e~k~~e~e~k~kEL~s~eK~~~~~~kEle~Kekel~~i~~~~~e 380 (1046)
--...+++.+.|...+.-+.-..+..+|+....+-+.+..-++.
T Consensus 503 ~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikd 549 (1118)
T KOG1029|consen 503 QKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKD 549 (1118)
T ss_pred HhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 22345667777777777777777788888777666655444433
No 30
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.90 E-value=2.5 Score=54.37 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001601 314 CIEKRSQELTLKEKQLKCVQ 333 (1046)
Q Consensus 314 ~ie~r~kELe~KEkql~~~~ 333 (1046)
.++.+..+|......+....
T Consensus 563 ~le~~~~~l~~~~~~~~~~~ 582 (908)
T COG0419 563 QLEDRLQELKELLEELRLLR 582 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333
No 31
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.87 E-value=2.4 Score=53.78 Aligned_cols=132 Identities=20% Similarity=0.269 Sum_probs=108.1
Q ss_pred HhhhhhhHHHHHHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHHHhhhhhhhhhHHHhhhhh
Q 001601 77 IESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDK 156 (1046)
Q Consensus 77 ~e~~e~~l~l~e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~e~~~Ke~el~~~~~~~~k 156 (1046)
++..+.+|.-++.++..|..+++-..++..+.|..|+=|--++..++.+-..+.-.|+.....++.|...++.-...+.+
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~ 368 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEK 368 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777788888999999999999999999999999999999999999999999999999999999999886655544
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 001601 157 SLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQS 208 (1046)
Q Consensus 157 ~~~d~~~~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~ 208 (1046)
-..+..++-..|.++...++.++-+++..++-|+.....|..|.+.+...-.
T Consensus 369 ~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~ 420 (775)
T PF10174_consen 369 LQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKE 420 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446666667788888888888888888888888888777777665555443
No 32
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.87 E-value=2.4 Score=53.73 Aligned_cols=167 Identities=23% Similarity=0.243 Sum_probs=112.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhh----hHHHHHHH---HH
Q 001601 239 DCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDI----ELKEREFN---GI 311 (1046)
Q Consensus 239 e~k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~e~~~kel----~~Ke~e~~---~~ 311 (1046)
+..+.|+.-+.+.|+-..-.-|.-|..-++.+.+|+.=..+++....+++-+..+|+..=-+- ....++++ .+
T Consensus 300 e~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~r 379 (1243)
T KOG0971|consen 300 ERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNAR 379 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHH
Confidence 344667777777777777666677888888888888888888888888888888886652111 11112221 12
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHh---HHHHHhhhhhh
Q 001601 312 RKCIEKRSQELTLKEKQ-LKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIEN---SAAELSDECES 387 (1046)
Q Consensus 312 ~K~ie~r~kELe~KEkq-l~~~~~e~e~k~~e~e~k~kEL~s~eK~~~~~~kEle~Kekel~~i~~---~~~e~~kelE~ 387 (1046)
-|.-=-|+.+|-.-+|+ +-..++++|-+..|++ ||.....++..++...|++=-.|-...+ +..+.+..+..
T Consensus 380 LKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~----eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtd 455 (1243)
T KOG0971|consen 380 LKDALVRLRDLSASEKQDHQKLQKELEKKNSELE----ELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTD 455 (1243)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHh
Confidence 22222266677677776 4556677777766654 6777788888888888887666632221 33455788888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 001601 388 NELELDLIQTMAIGYLKQLKEK 409 (1046)
Q Consensus 388 KEKele~~~k~~e~~~kele~K 409 (1046)
|.-+++.+++.+++.+.++|.-
T Consensus 456 knlnlEekVklLeetv~dlEal 477 (1243)
T KOG0971|consen 456 KNLNLEEKVKLLEETVGDLEAL 477 (1243)
T ss_pred hccCHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888777764
No 33
>PRK11637 AmiB activator; Provisional
Probab=96.85 E-value=0.73 Score=54.06 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001601 253 IELSLELHLEEEKLESL 269 (1046)
Q Consensus 253 ~e~~kele~kEkqle~~ 269 (1046)
....++++.....+..+
T Consensus 113 ~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 113 AKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 34
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.78 E-value=2.2 Score=51.94 Aligned_cols=213 Identities=20% Similarity=0.250 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHHhhhhhhhhhHHHhhhh---hh-----h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 128 LVKKSVEEWLEKLDLKMKEVGLVEKSND---KS-----L--VDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELV 197 (1046)
Q Consensus 128 ~~~~~veE~~~e~~~Ke~el~~~~~~~~---k~-----~--~d~~~~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~ 197 (1046)
-+.+.++.-+++++.|+.|+..++..+. +. + .|-++|...+.+++.++.-...++|.+.+.+
T Consensus 291 ~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~v-------- 362 (581)
T KOG0995|consen 291 HMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEV-------- 362 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 3456666777777777777777665331 11 1 2555566666666666666665555555444
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHh-hhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 198 MKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQC-ETKL---DCKKKELELTQTSIIELSLELHLEEEKLESLQRIV 273 (1046)
Q Consensus 198 ~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~-~kkl---e~k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l 273 (1046)
-.+..+|++..++++.+-.+|....+.|..- .... +.-.....-..-.++.+++ =.-...+.+....+
T Consensus 363 ------w~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~--~~l~el~~ei~~~~ 434 (581)
T KOG0995|consen 363 ------WELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVK--PLLKELLDEISEEL 434 (581)
T ss_pred ------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhH--HHHHHHHHHHHHHH
Confidence 3344567888889999999999888888776 1111 0000000000000001110 11223344444445
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHH
Q 001601 274 RLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESL-EGCRNEFEEKENELIS 352 (1046)
Q Consensus 274 ~~r~k~l~~~~~e~~~~e~e~e~~~kel~~Ke~e~~~~~K~ie~r~kELe~KEkql~~~~~e~-e~k~~e~e~k~kEL~s 352 (1046)
..+.+++.+.+.++..+..-+.++. .+...++.+.++++++.++.+.-..+. ..|..|.+..+++|-.
T Consensus 435 ~~~~~~~~tLq~~~~~~~~~i~E~~-----------~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~ 503 (581)
T KOG0995|consen 435 HEAENELETLQEHFSNKASTIEEKI-----------QILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLN 503 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555554444333333322 444455555666666655544443333 5555555555555554
Q ss_pred HHHhHHHhHHHHHHH
Q 001601 353 VEKLIDKCSEELELK 367 (1046)
Q Consensus 353 ~eK~~~~~~kEle~K 367 (1046)
..-.+....++.+..
T Consensus 504 l~l~~~~~m~~a~~~ 518 (581)
T KOG0995|consen 504 LKLVLNTSMKEAEEL 518 (581)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444443333
No 35
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.76 E-value=3.2 Score=53.71 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=33.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHHHhhhhhhhhhH
Q 001601 72 QRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGL 149 (1046)
Q Consensus 72 ~r~k~~e~~e~~l~l~e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~e~~~Ke~el~~ 149 (1046)
++.-.+++....+-.+++.+++..-+++....+++.+|.++..-.+++..-+.+++..-..+.+-..+.+..+++++-
T Consensus 306 ~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~ 383 (1074)
T KOG0250|consen 306 EKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIAD 383 (1074)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444445555555555555555555555554433333333333333333333333333333333333333
No 36
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.53 E-value=6.1 Score=53.91 Aligned_cols=56 Identities=21% Similarity=0.294 Sum_probs=39.3
Q ss_pred chhhhhhhhHhhHHHHHHhHHHHHHhhhchhheecchhchHHHHHHhHHHHHHhhhhhh
Q 001601 6 NNKEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDAD 64 (1046)
Q Consensus 6 ~~~~~l~~~~~k~e~~~~~~~~~~~qas~~l~~~l~w~~le~h~~s~~~~~e~~~~~~~ 64 (1046)
++.+.+.+++-|=++|++.++...+.+-++. =+.++|.+++-.-...+...+.++.
T Consensus 679 k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~---er~~~l~~~i~~~~q~~~~~s~eL~ 734 (1822)
T KOG4674|consen 679 KLKNELNLAKEKLENLEKNLELTKEEVETLE---ERNKNLQSTISKQEQTVHTLSQELL 734 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888888776655 3556666666665555555555443
No 37
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.42 E-value=5.9 Score=52.65 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=37.9
Q ss_pred HHHHHhHHHHHHhhhchhheecchhchHHHHHHhHHHHHHhhhhhhHHHHHHHHH
Q 001601 19 EILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQR 73 (1046)
Q Consensus 19 e~~~~~~~~~~~qas~~l~~~l~w~~le~h~~s~~~~~e~~~~~~~~k~~~le~r 73 (1046)
+.+|..++.+..+-+++..+..|=+.|-.++.......+....++..+...+...
T Consensus 242 ~~~r~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1201)
T PF12128_consen 242 EKVRPEFDKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEE 296 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5677777888888888888888877777777777766666665555555444333
No 38
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.31 E-value=3.8 Score=49.17 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 001601 167 LIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETK 237 (1046)
Q Consensus 167 ~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kk 237 (1046)
.++.+..++.....++......|+...+.+. .....+..+++++..+....+.+++....++..-...
T Consensus 182 ~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~---~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~ 249 (562)
T PHA02562 182 QIQTLDMKIDHIQQQIKTYNKNIEEQRKKNG---ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMD 249 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444444444444444444444433322 2233334444444444444444444444444444333
No 39
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.28 E-value=7 Score=51.99 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=31.6
Q ss_pred HHHHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHHHhhhhhhhh
Q 001601 86 LAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEV 147 (1046)
Q Consensus 86 l~e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~e~~~Ke~el 147 (1046)
..+..++.+......-...+..++....++..+.+....+|...+..+.++...+..=...|
T Consensus 473 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 473 QADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444445555555555555555555555555555555555555555555544444333333
No 40
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.24 E-value=1.7 Score=52.06 Aligned_cols=59 Identities=8% Similarity=0.165 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhH
Q 001601 166 NLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLY 224 (1046)
Q Consensus 166 ~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~ 224 (1046)
..+.++..+....+.+++.++..|....+++..-...+..+...+......++.-++.+
T Consensus 220 ~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~ 278 (562)
T PHA02562 220 NKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVI 278 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433333333334444444444444444333333
No 41
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.51 E-value=10 Score=47.83 Aligned_cols=238 Identities=16% Similarity=0.152 Sum_probs=124.4
Q ss_pred HHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhh
Q 001601 46 EEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGE 125 (1046)
Q Consensus 46 e~h~~s~~~~~e~~~~~~~~k~~~le~r~k~~e~~e~~l~l~e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~e 125 (1046)
++-+---.+.+|+...+..+-++.|..+..++|+ ++--++.-++.....+..-+-+|+.......+.+.+|..++-+
T Consensus 87 triyRrdv~llEddlk~~~sQiriLQn~c~~lE~---ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~e 163 (1265)
T KOG0976|consen 87 TRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEM---EKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHD 163 (1265)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHH
Confidence 3444444556677777778888888888776544 3333444445555555555666777777777777777777777
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------H
Q 001601 126 LNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRS-----------------S 188 (1046)
Q Consensus 126 L~~~~~~veE~~~e~~~Ke~el~~~~~~~~k~~~d~~~~~~~i~e~~~el~~ke~el~~~~~-----------------~ 188 (1046)
+..+.+.+.....++..++.|+...-. .+++.+.+++.|-+.|+.-.+ .
T Consensus 164 If~~~~~L~nk~~~lt~~~~q~~tkl~--------------e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~ 229 (1265)
T KOG0976|consen 164 IFMIGEDLHDKNEELNEFNMEFQTKLA--------------EANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQK 229 (1265)
T ss_pred HHHHHHHHhhhhhHHhHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 777777666655666666666654111 111122222222222221111 1
Q ss_pred HHHHHHHHHH-HH--HhhhhhHHHH-------HHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH-------
Q 001601 189 IEECEKELVM-KE--KHASSLQSLI-------EDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTS------- 251 (1046)
Q Consensus 189 Ie~~~kel~~-ke--~~l~~~~~ei-------ee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~kEl~~~~~~------- 251 (1046)
|-.....|-+ ++ +-++..-.-| +-..++|+-|+.|++.++--+...--+.++.++++..-.+.
T Consensus 230 vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~ 309 (1265)
T KOG0976|consen 230 VLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTR 309 (1265)
T ss_pred HHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222222 11 1111111122 33368888888888888877777777777777777633222
Q ss_pred ----HHHHHHH--HH---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhh
Q 001601 252 ----IIELSLE--LH---LEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDI 301 (1046)
Q Consensus 252 ----i~e~~ke--le---~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~e~~~kel 301 (1046)
+++-.+= ++ ++-..+.-+|-.++.|. +++|.-+++..++++......+.
T Consensus 310 a~gdseqatkylh~enmkltrqkadirc~LlEarr-k~egfddk~~eLEKkrd~al~dv 367 (1265)
T KOG0976|consen 310 ADGDSEQATKYLHLENMKLTRQKADIRCALLEARR-KAEGFDDKLNELEKKRDMALMDV 367 (1265)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHhH
Confidence 2222221 22 23334455555555554 45666555555555554444333
No 42
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.45 E-value=9.8 Score=47.19 Aligned_cols=195 Identities=20% Similarity=0.260 Sum_probs=111.1
Q ss_pred HhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHHHhhhhhhhhhHHHhhh-------hhhhhHHHH--
Q 001601 93 ECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSN-------DKSLVDQRR-- 163 (1046)
Q Consensus 93 e~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~e~~~Ke~el~~~~~~~-------~k~~~d~~~-- 163 (1046)
+.-.+++.-.++|+.++..|.+|..+++.-...+..+...+++......-.+.++.- .+++ +..+..+..
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l-~~k~~~lL~d~e~ni~kL~~~v 403 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKL-KKKTVELLPDAEENIAKLQALV 403 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCcHHHHHHHHHHH
Confidence 334444444455555555555555555555555555555555544444444444432 1111 111211111
Q ss_pred --HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 001601 164 --LENLIKDFCEQIELKEKDL----RKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETK 237 (1046)
Q Consensus 164 --~~~~i~e~~~el~~ke~el----~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kk 237 (1046)
-...+.++..+|+.....| +..+........+...+-..++.+..+++++..|+..|+..+.....+++..-+.
T Consensus 404 ~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 404 EASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 2336777788887755444 4444444444445555668888888899999999999999998888888887776
Q ss_pred hhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 001601 238 LDCK--KKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLD 288 (1046)
Q Consensus 238 le~k--~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~e~~ 288 (1046)
+.+. -.-.-.+=+.|+.+..+|.-.-.+--..+++|+.=.-+|.+.+.-.+
T Consensus 484 ~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~d 536 (594)
T PF05667_consen 484 VNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTD 536 (594)
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4211 01111334555555556666666666666666666666666554444
No 43
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.38 E-value=13 Score=48.26 Aligned_cols=87 Identities=26% Similarity=0.375 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHHHhhhhhh
Q 001601 66 KIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMK 145 (1046)
Q Consensus 66 k~~~le~r~k~~e~~e~~l~l~e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~e~~~Ke~ 145 (1046)
|+|++++ ++++..+.++....+..+......+...+-++...|..+..-..|+..-+.++..+.-.|-++..+++.-++
T Consensus 661 k~rl~ee-l~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~ 739 (1141)
T KOG0018|consen 661 KERLLEE-LKEIQKRRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREG 739 (1141)
T ss_pred HHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 4444433 444555555666666777777777788888888888777777788888888887777666677777777777
Q ss_pred hhhHHHhh
Q 001601 146 EVGLVEKS 153 (1046)
Q Consensus 146 el~~~~~~ 153 (1046)
+...++++
T Consensus 740 ~~~~L~~~ 747 (1141)
T KOG0018|consen 740 EMKELEER 747 (1141)
T ss_pred HHHHHHHH
Confidence 77665553
No 44
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.34 E-value=11 Score=46.95 Aligned_cols=28 Identities=11% Similarity=0.164 Sum_probs=20.1
Q ss_pred HHHhhhchhheecchhchHHHHHHhHHHH
Q 001601 28 AHAQANSVLNFTVQWKDLEEHLDISMKSL 56 (1046)
Q Consensus 28 ~~~qas~~l~~~l~w~~le~h~~s~~~~~ 56 (1046)
+.+-.+++|.+.+ -..|..|++......
T Consensus 171 l~~Ai~~LlGl~~-~~~L~~dl~~~~~~~ 198 (650)
T TIGR03185 171 LKEAIEVLLGLDL-IDRLAGDLTNVLRRR 198 (650)
T ss_pred HHHHHHHHhCcHH-HHHHHHHHHHHHHHH
Confidence 5556677888888 778888888765543
No 45
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.25 E-value=11 Score=46.35 Aligned_cols=38 Identities=26% Similarity=0.284 Sum_probs=22.0
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHhHHHhHHHHHHHHHHH
Q 001601 334 ESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHL 371 (1046)
Q Consensus 334 ~e~e~k~~e~e~k~kEL~s~eK~~~~~~kEle~Kekel 371 (1046)
...+....+++.-..++..+++++.+.-.|-...++++
T Consensus 364 ~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql 401 (546)
T PF07888_consen 364 HSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQL 401 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555666666666666666666555555
No 46
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.17 E-value=11 Score=46.16 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001601 427 LEIKERKFEERVKEFELREKEI 448 (1046)
Q Consensus 427 lesKek~fe~rvKE~elKEkq~ 448 (1046)
|..+.+++...+.-++.+=..+
T Consensus 436 l~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 436 LQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555555444444
No 47
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.96 E-value=14 Score=46.17 Aligned_cols=92 Identities=21% Similarity=0.235 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001601 183 RKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLE 262 (1046)
Q Consensus 183 ~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~kEl~~~~~~i~e~~kele~k 262 (1046)
..++..|.....=|.+++..+...+..+.-++.||.-|-..++++.+---..+-+++.-++.|...+. |--.
T Consensus 352 ~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qk--------ll~e 423 (786)
T PF05483_consen 352 TELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQK--------LLDE 423 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--------HHHH
Confidence 33333444444444445555555666666667777777777777665443333344444444443321 1122
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 001601 263 EEKLESLQRIVRLRENELDS 282 (1046)
Q Consensus 263 Ekqle~~~~~l~~r~k~l~~ 282 (1046)
+++|+...-++..++.+|-+
T Consensus 424 kk~~eki~E~lq~~eqel~~ 443 (786)
T PF05483_consen 424 KKQFEKIAEELQGTEQELTG 443 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555433
No 48
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.85 E-value=5 Score=44.49 Aligned_cols=94 Identities=20% Similarity=0.204 Sum_probs=41.3
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001601 219 SKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYF 298 (1046)
Q Consensus 219 ~KeK~~e~~~k~ie~~~kkle~k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~e~~~ 298 (1046)
..-+.++..+.+++...+.++....+++..++++.....++.....+.+ ..+..- .-.+..+++..++.++...-
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~----~~e~kl-~~v~~~~e~~aL~~E~~~ak 102 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIK----RAEEKL-SAVKDERELRALNIEIQIAK 102 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-hccccHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555433333333222222222222 221111 22344555666666665555
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 001601 299 NDIELKEREFNGIRKCIEK 317 (1046)
Q Consensus 299 kel~~Ke~e~~~~~K~ie~ 317 (1046)
......++++...+..++.
T Consensus 103 ~r~~~le~el~~l~~~~~~ 121 (239)
T COG1579 103 ERINSLEDELAELMEEIEK 121 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555444444433
No 49
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.84 E-value=19 Score=47.04 Aligned_cols=147 Identities=14% Similarity=0.279 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhH
Q 001601 163 RLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKK 242 (1046)
Q Consensus 163 ~~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~ 242 (1046)
.++..|.+.+.++.....+..++....+...+++.-.......+..++-.....+-.|++++-+|..-|....+--+.
T Consensus 224 hvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~-- 301 (1141)
T KOG0018|consen 224 HVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHL-- 301 (1141)
T ss_pred hhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccc--
Confidence 366777888888888888888877777777777666554455555555445555555555555533333332222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH----HHHhhhhhHHHHHHHHHHHHHHH
Q 001601 243 KELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEM----KKYFNDIELKEREFNGIRKCIEK 317 (1046)
Q Consensus 243 kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~----e~~~kel~~Ke~e~~~~~K~ie~ 317 (1046)
..++.+..+.++..++........|+-.++++......-..++++| ..+-.++.+++.++.+-..+.+.
T Consensus 302 ------k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~e 374 (1141)
T KOG0018|consen 302 ------KKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEE 374 (1141)
T ss_pred ------hhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHH
Confidence 1223344445555555555555555555555533333222223333 22333555666655444444433
No 50
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.70 E-value=21 Score=47.10 Aligned_cols=8 Identities=25% Similarity=0.725 Sum_probs=4.8
Q ss_pred HHHhhcCC
Q 001601 749 EWKTKMGV 756 (1046)
Q Consensus 749 ~WK~kl~~ 756 (1046)
+|++-+.+
T Consensus 1121 ~~~~~~V~ 1128 (1317)
T KOG0612|consen 1121 DWKRIYVI 1128 (1317)
T ss_pred chheeEEe
Confidence 38876533
No 51
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.59 E-value=7.4 Score=43.19 Aligned_cols=144 Identities=19% Similarity=0.283 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhh--hhh
Q 001601 164 LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKL--DCK 241 (1046)
Q Consensus 164 ~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkl--e~k 241 (1046)
+...+..+.-..+-..+.|++.+.+++...+.++..+..+..+++++..+..+|. +.+..+..-+.++ -+.
T Consensus 15 lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~-------~~r~r~~~~e~kl~~v~~ 87 (239)
T COG1579 15 LDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQ-------EIRERIKRAEEKLSAVKD 87 (239)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcccc
Confidence 3333444444444555566666666666666666655555555555544422221 1111111111111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 001601 242 KKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQE 321 (1046)
Q Consensus 242 ~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~e~~~kel~~Ke~e~~~~~K~ie~r~kE 321 (1046)
.+ ++......+......+..-+.++.....+..++++++......+..-++.|.+.+..++..+.+
T Consensus 88 ~~--------------e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~ 153 (239)
T COG1579 88 ER--------------ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAE 153 (239)
T ss_pred HH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 2222222233333333333344444555555556666666666666667777777777766655
Q ss_pred HHHHHHH
Q 001601 322 LTLKEKQ 328 (1046)
Q Consensus 322 Le~KEkq 328 (1046)
+......
T Consensus 154 i~e~~~~ 160 (239)
T COG1579 154 IREEGQE 160 (239)
T ss_pred HHHHHHH
Confidence 5444333
No 52
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=93.98 E-value=31 Score=46.12 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=25.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 384 ECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFEL 443 (1046)
Q Consensus 384 elE~KEKele~~~k~~e~~~kele~Kekefeskek~leer~KelesKek~fe~rvKE~el 443 (1046)
.++.+.++++.....++.+.-+.. -..+.+.--.|.++..-+.+......|+.++++.
T Consensus 1012 ~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~ 1069 (1294)
T KOG0962|consen 1012 NLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEEREKLSSEKNLLLGEMKQYES 1069 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence 444555555544444433332222 1222233334444445555555555555555444
No 53
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.93 E-value=36 Score=46.64 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=24.2
Q ss_pred chhhhhhhHHHHHHHHHHHHHhhh-cccccccchHHHHHHHH
Q 001601 851 SDAKVKAMDFEVNALTFLIECFKE-NKLESSLLIENIKQRIV 891 (1046)
Q Consensus 851 ~~aq~~a~~kEl~aLraVIKcIee-~KLEse~p~~~L~kRI~ 891 (1046)
+....+..+.++..++..|+=-+. +. ++.+.+...|.
T Consensus 1209 p~et~e~Le~ei~rl~~~L~e~Er~L~----~s~eEVa~~l~ 1246 (1486)
T PRK04863 1209 PVEAIEQMEIELSRLTEELTSREQKLA----ISSESVANIIR 1246 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHHHHHHH
Confidence 344556788888888888887776 33 55555544443
No 54
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.62 E-value=25 Score=43.78 Aligned_cols=62 Identities=24% Similarity=0.274 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHH
Q 001601 165 ENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDE 226 (1046)
Q Consensus 165 ~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~ 226 (1046)
++...+-..++.....+++.+...|+....++++-...+..+..++++...+.+..++++.-
T Consensus 320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l 381 (594)
T PF05667_consen 320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKL 381 (594)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777777777777777777776666666666665555555555444444443
No 55
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=93.51 E-value=17 Score=41.52 Aligned_cols=31 Identities=29% Similarity=0.321 Sum_probs=14.2
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHhhhhhhhh
Q 001601 117 CELQLKEGELNLVKKSVEEWLEKLDLKMKEV 147 (1046)
Q Consensus 117 ~El~~k~~eL~~~~~~veE~~~e~~~Ke~el 147 (1046)
.++.++|-+||--.+..-+--.++..+..+|
T Consensus 37 ~~~~ekRdeln~kvrE~~e~~~elr~~rdei 67 (294)
T COG1340 37 SELAEKRDELNAKVRELREKAQELREERDEI 67 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555544444444444444444444
No 56
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=93.32 E-value=35 Score=44.51 Aligned_cols=52 Identities=29% Similarity=0.366 Sum_probs=33.7
Q ss_pred hhhhHHHHHHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHH
Q 001601 80 KESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLE 138 (1046)
Q Consensus 80 ~e~~l~l~e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~ 138 (1046)
++-++.+++.++--.+-++++|-..+. +|..||+-.+.++.-.++.++++.-
T Consensus 175 L~velAdle~kir~LrqElEEK~enll-------~lr~eLddleae~~klrqe~~e~l~ 226 (1195)
T KOG4643|consen 175 LEVELADLEKKIRTLRQELEEKFENLL-------RLRNELDDLEAEISKLRQEIEEFLD 226 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666654443 4447777777777777888887765
No 57
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.03 E-value=28 Score=42.57 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHhHhhHHHHHhHH-------HHHHHHHhhhhhHHHHh
Q 001601 81 ESDLVLAERRIKECNFELACKEK-------QLELVRKRIGECECELQ 120 (1046)
Q Consensus 81 e~~l~l~e~~~ee~~~ele~Kek-------~l~~~r~~i~ec~~El~ 120 (1046)
+.+|...+.++..+...+..++. +|+..++.|++...-|+
T Consensus 33 e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe 79 (522)
T PF05701_consen 33 ETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLE 79 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666665553 44445555555444443
No 58
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=93.00 E-value=34 Score=43.57 Aligned_cols=104 Identities=16% Similarity=0.142 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHH
Q 001601 164 LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKK 243 (1046)
Q Consensus 164 ~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~k 243 (1046)
.+..|-.+..-+-.+|.++-.++.-|.+..-+++.-++.++.+.....++..+|-.|.-++-..-..+-..-..|.....
T Consensus 104 ~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~ 183 (1265)
T KOG0976|consen 104 HESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNM 183 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHH
Confidence 44444455555556666666666666666666666666666666666555555555555554444444444444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 244 ELELTQTSIIELSLELHLEEEKLE 267 (1046)
Q Consensus 244 El~~~~~~i~e~~kele~kEkqle 267 (1046)
+|.-+...+.+..++++-+=++|.
T Consensus 184 q~~tkl~e~~~en~~le~k~~k~~ 207 (1265)
T KOG0976|consen 184 EFQTKLAEANREKKALEEKLEKFK 207 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444444444444444443
No 59
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.99 E-value=24 Score=41.71 Aligned_cols=68 Identities=7% Similarity=0.129 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 001601 221 EKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLD 288 (1046)
Q Consensus 221 eK~~e~~~k~ie~~~kkle~k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~e~~ 288 (1046)
--|++.++.++..+.++|+...++|+-..+.+.-..++|...+-...-....|..|..++..+..++.
T Consensus 181 ~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~ia 248 (499)
T COG4372 181 ATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIA 248 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555555555555555555554444433333
No 60
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.95 E-value=37 Score=43.84 Aligned_cols=78 Identities=24% Similarity=0.305 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 257 LELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEM------KKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLK 330 (1046)
Q Consensus 257 kele~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~------e~~~kel~~Ke~e~~~~~K~ie~r~kELe~KEkql~ 330 (1046)
|++|-|.-.+++..+--+.=+.++...+-.+..+++++ +.-|..|..|--+++++=|+.|..+-+|+..+...+
T Consensus 403 kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~E 482 (1243)
T KOG0971|consen 403 KELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNE 482 (1243)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444333333333333333344444445555 556666777767777777777777777766665555
Q ss_pred HHHH
Q 001601 331 CVQE 334 (1046)
Q Consensus 331 ~~~~ 334 (1046)
.+++
T Consensus 483 QL~E 486 (1243)
T KOG0971|consen 483 QLQE 486 (1243)
T ss_pred HHHH
Confidence 4443
No 61
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.63 E-value=43 Score=43.75 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHH
Q 001601 164 LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKK 243 (1046)
Q Consensus 164 ~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~k 243 (1046)
|++++++.+.++..+..+++.. ...+..+-..++.++.++.+....+|...+.-+.+++.|+.-.+-|.....
T Consensus 281 Le~~~~et~~~~s~~~~~~~e~-------~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~ 353 (1072)
T KOG0979|consen 281 LESEKKETRSKISQKQRELNEA-------LAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQA 353 (1072)
T ss_pred HHhHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444443332 222333445566666777777777777777777777777777776666666
Q ss_pred HHH
Q 001601 244 ELE 246 (1046)
Q Consensus 244 El~ 246 (1046)
+|.
T Consensus 354 el~ 356 (1072)
T KOG0979|consen 354 ELQ 356 (1072)
T ss_pred hhh
Confidence 665
No 62
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.57 E-value=33 Score=42.27 Aligned_cols=77 Identities=18% Similarity=0.172 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhh
Q 001601 223 LYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDI 301 (1046)
Q Consensus 223 ~~e~~~k~ie~~~kkle~k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~e~~~kel 301 (1046)
++......|..+...|.+- ++......+.....+|+..-..++.....-..=.+........+.........+..++
T Consensus 257 ~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei 333 (569)
T PRK04778 257 EIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEI 333 (569)
T ss_pred HHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444322 4555556666666666666666666666655555555555555555555554444333
No 63
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=91.69 E-value=45 Score=41.95 Aligned_cols=176 Identities=15% Similarity=0.183 Sum_probs=77.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHh-------HHHhHHHHHHHHHH
Q 001601 298 FNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKL-------IDKCSEELELKKKH 370 (1046)
Q Consensus 298 ~kel~~Ke~e~~~~~K~ie~r~kELe~KEkql~~~~~e~e~k~~e~e~k~kEL~s~eK~-------~~~~~kEle~Keke 370 (1046)
+|.|..|+++-+-+.+--...+++|.+-+..|+.+-..-+.-++...+-++.+.+.-++ ...++.+|+.+-.-
T Consensus 476 IkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a 555 (961)
T KOG4673|consen 476 IKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALA 555 (961)
T ss_pred HHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34455555554444444444555555555555555444444444444433333333333 22344455544444
Q ss_pred HHHHHhHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 001601 371 LCVIENSAAE-LSDECESNELELDLIQTMAIGYLKQLKEKEKQ----FHSLKEALDER----WQDLEIKERKFEERVKEF 441 (1046)
Q Consensus 371 l~~i~~~~~e-~~kelE~KEKele~~~k~~e~~~kele~Keke----feskek~leer----~KelesKek~fe~rvKE~ 441 (1046)
+..-.+..+. +.+.--.|..+.-.+..++-..+.+|..+-.. .--++..|-+- ++.|+.-+...++-...+
T Consensus 556 ~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v 635 (961)
T KOG4673|consen 556 EQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQV 635 (961)
T ss_pred HHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4333333333 33444445555556666666666666554111 11112222222 222222222333222222
Q ss_pred HH----HHHHHHHHHHHHHHhhhhhhhHHhhhhccc
Q 001601 442 EL----REKEIESIRKAVEDRSKNLELKEKKLSNNL 473 (1046)
Q Consensus 442 el----KEkq~e~~~~~~e~~~Ke~E~kE~~l~~~~ 473 (1046)
-. -=.|+++.+..+.++.-.-+--|.+++..+
T Consensus 636 ~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL 671 (961)
T KOG4673|consen 636 PETTRPLLRQIEALQETLSKAATAWEREERSLNERL 671 (961)
T ss_pred cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Confidence 21 224667777766665555444455555544
No 64
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.46 E-value=57 Score=42.64 Aligned_cols=93 Identities=14% Similarity=0.179 Sum_probs=46.7
Q ss_pred HhhhhhhhhhhHHHHHHHHHHhhhhhhhhhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 119 LQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVM 198 (1046)
Q Consensus 119 l~~k~~eL~~~~~~veE~~~e~~~Ke~el~~~~~~~~k~~~d~~~~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ 198 (1046)
+..-+.+|..+..++.+|..++..--.++.++..++.+---|+..+...+..+..++.+...+.-.+..+++-..+.|+.
T Consensus 673 ~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~ 752 (1200)
T KOG0964|consen 673 VNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEE 752 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHH
Confidence 33334444444444444444443333344443333222222444455555666666666666666666666666666666
Q ss_pred HHHhhhhhHHHHH
Q 001601 199 KEKHASSLQSLIE 211 (1046)
Q Consensus 199 ke~~l~~~~~eie 211 (1046)
=.+++..++...+
T Consensus 753 i~~~l~~~~~~~~ 765 (1200)
T KOG0964|consen 753 IKTSLHKLESQSN 765 (1200)
T ss_pred HHHHHHHHHHHHH
Confidence 5566555555543
No 65
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=90.93 E-value=21 Score=36.76 Aligned_cols=90 Identities=20% Similarity=0.279 Sum_probs=66.7
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHH
Q 001601 57 EKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEW 136 (1046)
Q Consensus 57 e~~~~~~~~k~~~le~r~k~~e~~e~~l~l~e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~ 136 (1046)
+.-.+++.++-..++.+ |++++.+|++.+...+....+.++.++++..++..|+.-..++.--+.+|.-++..-+..
T Consensus 9 ~~kLK~~~~e~dsle~~---v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 9 EEKLKESESEKDSLEDH---VESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred HHHHHHHHHhHhhHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555666653 567888888888888888888888888888888888887777777777777777777766
Q ss_pred HHHhhhhhhhhhH
Q 001601 137 LEKLDLKMKEVGL 149 (1046)
Q Consensus 137 ~~e~~~Ke~el~~ 149 (1046)
..++.-+.+.+.+
T Consensus 86 ~k~lq~~q~kv~e 98 (140)
T PF10473_consen 86 DKELQKKQEKVSE 98 (140)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666666
No 66
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=90.54 E-value=79 Score=42.65 Aligned_cols=109 Identities=22% Similarity=0.311 Sum_probs=58.3
Q ss_pred HHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHH---HhhhhhhhhhHHHhhh-------hhhhh
Q 001601 90 RIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLE---KLDLKMKEVGLVEKSN-------DKSLV 159 (1046)
Q Consensus 90 ~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~---e~~~Ke~el~~~~~~~-------~k~~~ 159 (1046)
+.+..+.-++.....+.+.+....||+.++..-...+.+++..+.|-.+ .+...+.+...+.+-+ .+ +.
T Consensus 217 ~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l~~~i~~-~~ 295 (1294)
T KOG0962|consen 217 RAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRLREKILK-IF 295 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cc
Confidence 4444555555666667777777778877777777777777777776555 2222233332222211 11 11
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 160 DQRR--LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMK 199 (1046)
Q Consensus 160 d~~~--~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~k 199 (1046)
|.+. +...+..+...+.+.+...+.+...+.....+..+.
T Consensus 296 ~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l 337 (1294)
T KOG0962|consen 296 DGTDEELGELLSNFEERLEEMGEKLRELEREISDLNEERSSL 337 (1294)
T ss_pred ccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 1111 223455555556666666666666555555443333
No 67
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=90.13 E-value=59 Score=40.61 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=15.2
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHhHHH
Q 001601 353 VEKLIDKCSEELELKKKHLCVIENSAA 379 (1046)
Q Consensus 353 ~eK~~~~~~kEle~Kekel~~i~~~~~ 379 (1046)
.++.+.....++...+.+++.+..++.
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKIS 415 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666666666655555443
No 68
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=89.78 E-value=69 Score=40.82 Aligned_cols=104 Identities=14% Similarity=0.211 Sum_probs=56.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------
Q 001601 212 DYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLREN------------- 278 (1046)
Q Consensus 212 e~~~ElE~KeK~~e~~~k~ie~~~kkle~k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k------------- 278 (1046)
.+--||....++.|+.+..+-...+.-+.-+.-+...+.++.+-.+.....|+||.+.++.-...+.
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r 536 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATR 536 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhcc
Confidence 3455666666667766666655555544444555566666666667777777777666654222111
Q ss_pred -hh-hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001601 279 -EL-DSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCI 315 (1046)
Q Consensus 279 -~l-~~~~~e~~~~e~e~e~~~kel~~Ke~e~~~~~K~i 315 (1046)
++ +.+......|+.|++.+-.||..||.+....+.++
T Consensus 537 ~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 537 QECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 22222333355555555555555555554444444
No 69
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.74 E-value=93 Score=40.92 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=19.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001601 279 ELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIE 316 (1046)
Q Consensus 279 ~l~~~~~e~~~~e~e~e~~~kel~~Ke~e~~~~~K~ie 316 (1046)
++.....++.-++.++.++.+++++.-++=+-+++.|+
T Consensus 305 k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~ 342 (1072)
T KOG0979|consen 305 KVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIE 342 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555566666666655555554433333333
No 70
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=88.64 E-value=46 Score=40.82 Aligned_cols=8 Identities=25% Similarity=0.177 Sum_probs=3.6
Q ss_pred hHHHHHhh
Q 001601 698 FVLDFIQH 705 (1046)
Q Consensus 698 LVLDaieg 705 (1046)
.|+++|..
T Consensus 392 ~V~~aI~~ 399 (514)
T TIGR03319 392 EVVNAIAA 399 (514)
T ss_pred HHHHHHHH
Confidence 34444443
No 71
>PRK04863 mukB cell division protein MukB; Provisional
Probab=88.47 E-value=1.2e+02 Score=41.91 Aligned_cols=21 Identities=19% Similarity=0.025 Sum_probs=13.7
Q ss_pred HHHHHHhHhccccccChHHHH
Q 001601 766 VFLQLLGTFELVASFNRVEIV 786 (1046)
Q Consensus 766 aFLqLLaafGL~seFd~dEL~ 786 (1046)
.+-+=|..+|+-.+++.++-.
T Consensus 1038 E~eqe~~~~g~~~~~~~~~~~ 1058 (1486)
T PRK04863 1038 ELKQELQDLGVPADSGAEERA 1058 (1486)
T ss_pred HHHHHHHHcCCCCCccHHHHH
Confidence 345667778888777765543
No 72
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=88.00 E-value=50 Score=36.97 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 221 EKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLE 267 (1046)
Q Consensus 221 eK~~e~~~k~ie~~~kkle~k~kEl~~~~~~i~e~~kele~kEkqle 267 (1046)
...+...+.++...+.++.+...++...+.....+...+...+.++.
T Consensus 208 ~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~ 254 (312)
T PF00038_consen 208 SEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD 254 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH
Confidence 33344444444444444444444445444444444444444443333
No 73
>PRK12704 phosphodiesterase; Provisional
Probab=87.60 E-value=73 Score=39.19 Aligned_cols=10 Identities=20% Similarity=0.302 Sum_probs=5.2
Q ss_pred hHHHHHhhhh
Q 001601 698 FVLDFIQHWK 707 (1046)
Q Consensus 698 LVLDaieg~~ 707 (1046)
.|.++|...+
T Consensus 398 ~v~~aI~~HH 407 (520)
T PRK12704 398 VVINAIAAHH 407 (520)
T ss_pred HHHHHHHHcC
Confidence 4556555433
No 74
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.40 E-value=96 Score=39.57 Aligned_cols=41 Identities=22% Similarity=0.406 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001601 170 DFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDY 213 (1046)
Q Consensus 170 e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~ 213 (1046)
+|++.++.+..+++ .+|...+.||+.++...+.++.++.++
T Consensus 538 e~~e~~r~r~~~lE---~E~~~lr~elk~kee~~~~~e~~~~~l 578 (697)
T PF09726_consen 538 ECAESCRQRRRQLE---SELKKLRRELKQKEEQIRELESELQEL 578 (697)
T ss_pred hhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655444 566666666666666666666666544
No 75
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=87.39 E-value=46 Score=35.90 Aligned_cols=136 Identities=22% Similarity=0.346 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHH
Q 001601 164 LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKK 243 (1046)
Q Consensus 164 ~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~k 243 (1046)
|-..|.-+..++.+....++..+..+-.-...+..+..++..+...+..+..= .+.|.+.++.+ ...++..-..
T Consensus 59 Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L--~~dknL~eRee----L~~kL~~~~~ 132 (194)
T PF15619_consen 59 LPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKL--SEDKNLAEREE----LQRKLSQLEQ 132 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCchhHHH----HHHHHHHHHH
Confidence 56677888888888888888888877777777777777777777776554221 33344444311 1233444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 001601 244 ELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREF 308 (1046)
Q Consensus 244 El~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~e~~~kel~~Ke~e~ 308 (1046)
.+......|..+.+++++-.+-| .+.+....++....+.+...+..++..+-.-|.-|+++|
T Consensus 133 ~l~~~~~ki~~Lek~leL~~k~~---~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer~L 194 (194)
T PF15619_consen 133 KLQEKEKKIQELEKQLELENKSF---RRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKEREL 194 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45555555666666666655543 455666666777777788888888888877777777654
No 76
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.88 E-value=40 Score=34.63 Aligned_cols=40 Identities=23% Similarity=0.444 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 418 EALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVED 457 (1046)
Q Consensus 418 k~leer~KelesKek~fe~rvKE~elKEkq~e~~~~~~e~ 457 (1046)
+...+++.+...+-..|+-+|+.++..-...+.....++.
T Consensus 97 ~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~ 136 (143)
T PF12718_consen 97 KETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEE 136 (143)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4445555556666666666666655555544444443333
No 77
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=86.21 E-value=53 Score=35.43 Aligned_cols=185 Identities=17% Similarity=0.245 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHHHhhhhhhhh
Q 001601 68 RLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEV 147 (1046)
Q Consensus 68 ~~le~r~k~~e~~e~~l~l~e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~e~~~Ke~el 147 (1046)
|++-.|...+-.+.-++..+..+++++..|...-+.----- .+.+.--++.=+.++++|--+..|+.+=...|
T Consensus 5 rvlSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq-------~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~L 77 (194)
T PF15619_consen 5 RVLSARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQ-------EKALQKYEDTEAELPQLLQRHNEEVRVLRERL 77 (194)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444544444455555555555555554443322111111 13333333444455555655555444333333
Q ss_pred hHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHhhhhhH
Q 001601 148 GLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASS---LQSLIEDYAEELESKEKLY 224 (1046)
Q Consensus 148 ~~~~~~~~k~~~d~~~~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~---~~~eiee~~~ElE~KeK~~ 224 (1046)
+- ..+........++.++.++-.++..+....+- ++.++|.. +...+..+...++.+++..
T Consensus 78 R~--------------~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L--~~dknL~eReeL~~kL~~~~~~l~~~~~ki 141 (194)
T PF15619_consen 78 RK--------------SQEQERELERKLKDKDEELLKTKDELKHLKKL--SEDKNLAEREELQRKLSQLEQKLQEKEKKI 141 (194)
T ss_pred HH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22333444445555566666666655554433 22233333 3344555566666666666
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001601 225 DEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLREN 278 (1046)
Q Consensus 225 e~~~k~ie~~~kkle~k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k 278 (1046)
....+.++...+-+ ...+..-..++.+...++.....++.....-|..+++
T Consensus 142 ~~Lek~leL~~k~~---~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 142 QELEKQLELENKSF---RRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKER 192 (194)
T ss_pred HHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666666666555 4455544444444444444444444444444444333
No 78
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=86.09 E-value=14 Score=40.71 Aligned_cols=103 Identities=19% Similarity=0.221 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 001601 173 EQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSI 252 (1046)
Q Consensus 173 ~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~kEl~~~~~~i 252 (1046)
.+|+.|-.+|..++..|-.....++.++.+|.....+++.|..|-..=..++-.+..+|..-+.-|.+-+.+-...++.|
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i 83 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI 83 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777777777777777666555555555555555555555555544455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHH
Q 001601 253 IELSLELHLEEEKLESLQRI-VRL 275 (1046)
Q Consensus 253 ~e~~kele~kEkqle~~~~~-l~~ 275 (1046)
..+..++.-.+.+++..+++ +++
T Consensus 84 ~r~~eey~~Lk~~in~~R~e~lgl 107 (230)
T PF10146_consen 84 QRLYEEYKPLKDEINELRKEYLGL 107 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55555555555555555555 443
No 79
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.69 E-value=1.2e+02 Score=39.01 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=15.9
Q ss_pred hhhhhhccccccccccccccccccccc
Q 001601 1010 FDHIASNHLRVRANMGAGQTSNVTGNQ 1036 (1046)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1046)
||..|+|.=- -+..-||.-||+|..
T Consensus 1060 YdY~AqndDE--LsF~kgdiI~Vlnkd 1084 (1118)
T KOG1029|consen 1060 YDYEAQNDDE--LSFKKGDIINVLNKD 1084 (1118)
T ss_pred eccccCCccc--ccccCCCEEEecCCC
Confidence 4667777644 334567778887754
No 80
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=85.14 E-value=63 Score=35.27 Aligned_cols=63 Identities=22% Similarity=0.284 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001601 257 LELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELT 323 (1046)
Q Consensus 257 kele~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~e~~~kel~~Ke~e~~~~~K~ie~r~kELe 323 (1046)
+.|-.++.+|+.-..-.+.-+.++.....++.. +..-.+.|..++..+......++..++.|.
T Consensus 88 rkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~----~~~nlk~l~~~ee~~~q~~d~~e~~ik~lt 150 (205)
T KOG1003|consen 88 RKLVIIEGELERAEERAEAAESQSEELEEDLRI----LDSNLKSLSAKEEKLEQKEEKYEEELKELT 150 (205)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----hHhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 667777777777776666666666665555553 344555555555555555555555444443
No 81
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=84.71 E-value=1e+02 Score=37.48 Aligned_cols=61 Identities=11% Similarity=0.172 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 001601 285 EKLDAMKEEMKKYFNDIELKEREF-------NGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEE 345 (1046)
Q Consensus 285 ~e~~~~e~e~e~~~kel~~Ke~e~-------~~~~K~ie~r~kELe~KEkql~~~~~e~e~k~~e~e~ 345 (1046)
.+++.|..+.+.++++|.--.-+. .++..+++.+.++|+.+-.++++...+|.....++-.
T Consensus 368 e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~ 435 (622)
T COG5185 368 EQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGH 435 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhh
Confidence 344444444444444443322222 2333344556777888888888888888776555444
No 82
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=83.96 E-value=79 Score=35.44 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001601 164 LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSII 232 (1046)
Q Consensus 164 ~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie 232 (1046)
+...++++...++.-......+...|....+++...--..-.++..|..+.+||....+.+++-+.++.
T Consensus 80 l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~ 148 (312)
T PF00038_consen 80 LKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELR 148 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 444555555555555555556666666666666655555555666666666666666666665444433
No 83
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.95 E-value=64 Score=37.06 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=12.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhh
Q 001601 211 EDYAEELESKEKLYDEIKKSIIQCET 236 (1046)
Q Consensus 211 ee~~~ElE~KeK~~e~~~k~ie~~~k 236 (1046)
.+....|+.+-..+..+..+++.|+.
T Consensus 183 ~~~~~~L~~e~~~Lk~~~~e~~~~D~ 208 (325)
T PF08317_consen 183 RERKAELEEELENLKQLVEEIESCDQ 208 (325)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCH
Confidence 33344444444444455555555554
No 84
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=83.93 E-value=9.5 Score=48.00 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001601 175 IELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDY 213 (1046)
Q Consensus 175 l~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~ 213 (1046)
+...-++|+++.+.++....+..+=++.+..++....++
T Consensus 269 l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el 307 (722)
T PF05557_consen 269 LREELKHLRQSQENVELLEEEKRSLQRKLERLEELEEEL 307 (722)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456778888888888888777666666666443333
No 85
>PRK09039 hypothetical protein; Validated
Probab=83.24 E-value=99 Score=36.04 Aligned_cols=47 Identities=21% Similarity=0.324 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001601 172 CEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELE 218 (1046)
Q Consensus 172 ~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE 218 (1046)
..++..++.+|+.....|.....-|.........++..+.++...++
T Consensus 45 s~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~ 91 (343)
T PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLS 91 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34577778888888888877776666677777777777766655554
No 86
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=82.76 E-value=0.39 Score=61.29 Aligned_cols=57 Identities=18% Similarity=0.040 Sum_probs=0.0
Q ss_pred hhhhhhhHHHhhhhcCCchhhHHHhhhccCCCCC--------CCCCccchhhHHHHHhHHHHhhh
Q 001601 518 HDLVFGEISHTLTKACDPASLVLDAMEGFYPPHS--------REGDMEFDVSIIRRTCILLLEQL 574 (1046)
Q Consensus 518 ~~~lr~Ev~~ALr~a~DPAkLVLDaLEgFy~~~~--------k~gd~~~d~~~~RrsCilLLE~L 574 (1046)
...-..|+..+|..+.+--....++..-+..... ...+.+-.+...|++|--=+++|
T Consensus 466 LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~l 530 (859)
T PF01576_consen 466 LEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESL 530 (859)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHH
Confidence 3334455556666655554444444444433211 11122223445788877666666
No 87
>PRK00106 hypothetical protein; Provisional
Probab=82.46 E-value=46 Score=41.10 Aligned_cols=9 Identities=22% Similarity=0.320 Sum_probs=5.0
Q ss_pred HHHHHhhhh
Q 001601 699 VLDFIQHWK 707 (1046)
Q Consensus 699 VLDaieg~~ 707 (1046)
|+++|...+
T Consensus 414 v~~aI~~HH 422 (535)
T PRK00106 414 VVNTIASHH 422 (535)
T ss_pred HHHHHHHhC
Confidence 566665544
No 88
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=81.90 E-value=1.4e+02 Score=37.02 Aligned_cols=75 Identities=21% Similarity=0.304 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---HHHHHhhhhhHHHHHHHHHHhhhhh
Q 001601 164 LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDY---AEELESKEKLYDEIKKSIIQCETKL 238 (1046)
Q Consensus 164 ~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~---~~ElE~KeK~~e~~~k~ie~~~kkl 238 (1046)
.+..|++-..+....+.+++..+.++....+.+..+++++.+....+..+ ..+++.+-..+..+++.++..-+.|
T Consensus 97 ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~L 174 (546)
T KOG0977|consen 97 ARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRL 174 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 55577777777777788888888888888888888888888888777644 4666777777777766666665555
No 89
>PRK00106 hypothetical protein; Provisional
Probab=81.72 E-value=45 Score=41.17 Aligned_cols=9 Identities=33% Similarity=0.357 Sum_probs=4.4
Q ss_pred hHHHHhhhh
Q 001601 567 CILLLEQLS 575 (1046)
Q Consensus 567 CilLLE~L~ 575 (1046)
--.-||.|.
T Consensus 281 Ar~~le~Li 289 (535)
T PRK00106 281 ARMTLESLI 289 (535)
T ss_pred HHHHHHHHH
Confidence 334455554
No 90
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=81.07 E-value=48 Score=40.65 Aligned_cols=9 Identities=33% Similarity=0.408 Sum_probs=4.6
Q ss_pred hHHHHhhhh
Q 001601 567 CILLLEQLS 575 (1046)
Q Consensus 567 CilLLE~L~ 575 (1046)
--+-||.|.
T Consensus 260 a~~~l~~li 268 (514)
T TIGR03319 260 ARMALEKLI 268 (514)
T ss_pred HHHHHHHHH
Confidence 334456664
No 91
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=80.54 E-value=32 Score=42.70 Aligned_cols=41 Identities=12% Similarity=0.069 Sum_probs=35.2
Q ss_pred hheecchhchHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHH
Q 001601 36 LNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKE 76 (1046)
Q Consensus 36 l~~~l~w~~le~h~~s~~~~~e~~~~~~~~k~~~le~r~k~ 76 (1046)
++.|+-|+-=-||---+.+.--+-.+...+|.+.+|.+..+
T Consensus 330 ~~r~~~~~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~~~~ 370 (652)
T COG2433 330 ALRTLKISVSDDHERDALAAAYKAYLAYKPKLEKVERKLPE 370 (652)
T ss_pred HHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 66788888888999888888888899999999988888774
No 92
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=80.42 E-value=76 Score=32.85 Aligned_cols=106 Identities=18% Similarity=0.162 Sum_probs=67.7
Q ss_pred chhchHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHh
Q 001601 41 QWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQ 120 (1046)
Q Consensus 41 ~w~~le~h~~s~~~~~e~~~~~~~~k~~~le~r~k~~e~~e~~l~l~e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~ 120 (1046)
.||..+.|-||....|+...+++..-..-.+.=..+.|...++..-++..++....++..-+-+|..++..-+...+++.
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq 90 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQ 90 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777776666666554444444445556666666666667777777776667777777766666667777
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhhhhh
Q 001601 121 LKEGELNLVKKSVEEWLEKLDLKMKE 146 (1046)
Q Consensus 121 ~k~~eL~~~~~~veE~~~e~~~Ke~e 146 (1046)
.+.+++..+......+..-+..++.+
T Consensus 91 ~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 91 KKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 77776666666666655555555444
No 93
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=79.89 E-value=77 Score=32.59 Aligned_cols=49 Identities=24% Similarity=0.249 Sum_probs=22.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 001601 298 FNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEK 346 (1046)
Q Consensus 298 ~kel~~Ke~e~~~~~K~ie~r~kELe~KEkql~~~~~e~e~k~~e~e~k 346 (1046)
+..++.+.++++..-..++..+..|..|-.+++.-...++..-.+....
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~ 64 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEK 64 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555444444444444443333333333
No 94
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=79.12 E-value=1.6e+02 Score=35.66 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 160 DQRRLENLIKDFCEQIELKEKDLRKIRS 187 (1046)
Q Consensus 160 d~~~~~~~i~e~~~el~~ke~el~~~~~ 187 (1046)
|+..++..|.+....+...+.+.++.+.
T Consensus 88 ~l~~~~~~I~~~~~~l~~l~~q~r~qr~ 115 (420)
T COG4942 88 DLKKLRKQIADLNARLNALEVQEREQRR 115 (420)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566666666655555544444
No 95
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=78.49 E-value=1.7e+02 Score=35.89 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhHHHhHHHHHHHHHHH
Q 001601 323 TLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHL 371 (1046)
Q Consensus 323 e~KEkql~~~~~e~e~k~~e~e~k~kEL~s~eK~~~~~~kEle~Kekel 371 (1046)
.........+...++....+++..-.++...+.+...-...+.+.+.++
T Consensus 298 ~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL 346 (522)
T PF05701_consen 298 EKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAEL 346 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHH
Confidence 3333334444444455555555544455554444443333333333333
No 96
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=78.31 E-value=33 Score=42.64 Aligned_cols=13 Identities=15% Similarity=0.263 Sum_probs=7.5
Q ss_pred hhhhHHHHhhhhh
Q 001601 112 IGECECELQLKEG 124 (1046)
Q Consensus 112 i~ec~~El~~k~~ 124 (1046)
|+||...+..++.
T Consensus 390 l~eal~~~~e~~~ 402 (652)
T COG2433 390 LAEALSKVKEEER 402 (652)
T ss_pred HHHHHHHHHhhhc
Confidence 6666665555444
No 97
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=77.91 E-value=94 Score=32.47 Aligned_cols=88 Identities=16% Similarity=0.240 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhhhh-----hhHHHHHHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHHH
Q 001601 65 SKIRLLDQRAKEIESKE-----SDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEK 139 (1046)
Q Consensus 65 ~k~~~le~r~k~~e~~e-----~~l~l~e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~e 139 (1046)
.....++.+++..+..- -+|+.++.+.+.+...++.+.++|...+..++-=.--+-.-+..|.++.........+
T Consensus 20 ~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~ 99 (177)
T PF13870_consen 20 HQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQE 99 (177)
T ss_pred HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555444433 4677888888999999999999999999888877777777788888887777777777
Q ss_pred hhhhhhhhhHHHh
Q 001601 140 LDLKMKEVGLVEK 152 (1046)
Q Consensus 140 ~~~Ke~el~~~~~ 152 (1046)
+..+...+..+++
T Consensus 100 l~~~~~~~~~~r~ 112 (177)
T PF13870_consen 100 LKDREEELAKLRE 112 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666666443
No 98
>PF13166 AAA_13: AAA domain
Probab=77.41 E-value=2e+02 Score=36.00 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=19.8
Q ss_pred chhheecc-------hhchHHHHHHhHHHHHHhhh
Q 001601 34 SVLNFTVQ-------WKDLEEHLDISMKSLEKQSN 61 (1046)
Q Consensus 34 ~~l~~~l~-------w~~le~h~~s~~~~~e~~~~ 61 (1046)
+.--||-| |..|+.||+..........+
T Consensus 256 ~~CpfC~q~~l~~~~~~~l~~~f~~~~~~~~~~l~ 290 (712)
T PF13166_consen 256 DTCPFCQQEPLSEERKERLEKYFDEEYEKLIEELE 290 (712)
T ss_pred CcCCCCCCcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777 68899999887766544443
No 99
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=76.80 E-value=1.9e+02 Score=35.43 Aligned_cols=100 Identities=19% Similarity=0.270 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHH
Q 001601 167 LIKDFCEQIELKEKDLRKIRSSIEECEKELVMKE---KHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKK 243 (1046)
Q Consensus 167 ~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke---~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~k 243 (1046)
++..+..+++.||.|+...+..+....+.+.-+. ..++.+-.+.+++..||+.-.-+.+..++.|.+.
T Consensus 331 ~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~--------- 401 (622)
T COG5185 331 KLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSR--------- 401 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhH---------
Confidence 4555555555555555555555555555544331 3444444444444444444433333333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001601 244 ELELTQTSIIELSLELHLEEEKLESLQRIVRLRENEL 280 (1046)
Q Consensus 244 El~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l 280 (1046)
.-.+.+..+.++-+=.++.+.+..|..+..++
T Consensus 402 -----~leaq~~~~slek~~~~~~sl~~~i~~~~~~i 433 (622)
T COG5185 402 -----KLEAQGIFKSLEKTLRQYDSLIQNITRSRSQI 433 (622)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 11223334444444455555555555554433
No 100
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=76.62 E-value=2.4e+02 Score=36.49 Aligned_cols=55 Identities=18% Similarity=0.317 Sum_probs=38.8
Q ss_pred HHHhHHHHHHhhhchhheecchhchHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHH
Q 001601 21 LRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKE 76 (1046)
Q Consensus 21 ~~~~~~~~~~qas~~l~~~l~w~~le~h~~s~~~~~e~~~~~~~~k~~~le~r~k~ 76 (1046)
+.|-+.++++= -|+|-.+.--.|++.|...++--++-.---+++..|.|+.+++|
T Consensus 358 ~qRLitEvE~c-islLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqqlre 412 (861)
T PF15254_consen 358 VQRLITEVEAC-ISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQLRE 412 (861)
T ss_pred HHHHHHHHHHH-HHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 44556666654 45777777788999999988777765555666666777766665
No 101
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=76.13 E-value=2.1e+02 Score=35.64 Aligned_cols=133 Identities=19% Similarity=0.191 Sum_probs=82.9
Q ss_pred HHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHHHhhhhhhhhhHHHhhhhhhhh-------HHHHHHHHHHHHHHHH
Q 001601 103 KQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLV-------DQRRLENLIKDFCEQI 175 (1046)
Q Consensus 103 k~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~e~~~Ke~el~~~~~~~~k~~~-------d~~~~~~~i~e~~~el 175 (1046)
-++..+|+.|.+--++...-+.++.-++..+.+....+.-+++.+...++.+..-+. ....+...|+.|..++
T Consensus 92 ~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~ 171 (546)
T KOG0977|consen 92 AELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDEL 171 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 345556666666555555555666666666666666565565555554444332211 2222455677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 001601 176 ELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCE 235 (1046)
Q Consensus 176 ~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~ 235 (1046)
+-...+...+..+|....+.|..+---....++.+..+-++|.-....++..+++.-...
T Consensus 172 ~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~ 231 (546)
T KOG0977|consen 172 KRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKA 231 (546)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 777777777777777777776665555555667788888888888888877766654443
No 102
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.11 E-value=1.9e+02 Score=35.08 Aligned_cols=23 Identities=17% Similarity=0.074 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHH
Q 001601 325 KEKQLKCVQESLEGCRNEFEEKE 347 (1046)
Q Consensus 325 KEkql~~~~~e~e~k~~e~e~k~ 347 (1046)
+...++......+.+..+|.+.+
T Consensus 196 ~~~~~k~~k~~ae~~~qq~q~~a 218 (438)
T COG4487 196 KWAILKKLKRRAELGSQQVQGEA 218 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 33334444444444444444443
No 103
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=75.85 E-value=0.87 Score=58.24 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhh
Q 001601 86 LAERRIKECNFELACKEKQLELVRKRIGECECELQLKEG 124 (1046)
Q Consensus 86 l~e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~ 124 (1046)
-+..++++=......-.|.+..+...|+|..-||++.+.
T Consensus 22 ~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~ 60 (859)
T PF01576_consen 22 QLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQ 60 (859)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444455555555555555555543
No 104
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=75.44 E-value=1.1e+02 Score=32.11 Aligned_cols=62 Identities=16% Similarity=0.268 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHHhHH----HhHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 001601 341 NEFEEKENELISVEKLID----KCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGY 402 (1046)
Q Consensus 341 ~e~e~k~kEL~s~eK~~~----~~~kEle~Kekel~~i~~~~~e~~kelE~KEKele~~~k~~e~~ 402 (1046)
+-+++..+.|..++.-++ =.-+|++..++.++.+-...+-+.+.|..|++++..-++.+.+.
T Consensus 59 grveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEk 124 (159)
T PF04949_consen 59 GRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEK 124 (159)
T ss_pred hHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433 34577888888888888888888999999999998877666553
No 105
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=73.55 E-value=2.2e+02 Score=34.51 Aligned_cols=38 Identities=21% Similarity=0.421 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001601 180 KDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEEL 217 (1046)
Q Consensus 180 ~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~El 217 (1046)
+.+++++..|+...+++..-+..+..++.+|.++.+++
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i 75 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEI 75 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455444444444444444444444444443333
No 106
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=73.09 E-value=1.5e+02 Score=32.51 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=6.5
Q ss_pred hhhhHHHHHHcCcc
Q 001601 641 HRQTSKLRQSLGFA 654 (1046)
Q Consensus 641 ~rQapeLcraLGl~ 654 (1046)
++-..-||.+-|++
T Consensus 265 n~nI~~L~~~q~~~ 278 (302)
T PF10186_consen 265 NKNIAQLCFSQGID 278 (302)
T ss_pred HHHHHHHHHHcCCC
Confidence 34444455544444
No 107
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=72.44 E-value=2.6e+02 Score=35.91 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 243 KELELTQTSIIELSLELHLEEEKLESLQ 270 (1046)
Q Consensus 243 kEl~~~~~~i~e~~kele~kEkqle~~~ 270 (1046)
+||....+++..+..-++...++++.+.
T Consensus 639 ~EL~~~~~~l~~l~~si~~lk~k~~~Q~ 666 (717)
T PF10168_consen 639 KELERMKDQLQDLKASIEQLKKKLDYQQ 666 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333444444444333
No 108
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=71.30 E-value=2.3e+02 Score=33.96 Aligned_cols=22 Identities=23% Similarity=0.126 Sum_probs=10.2
Q ss_pred cCCCCCChHHHHHHHHHHHhhh
Q 001601 621 GLGPSFDGIELESLLDIVAQHR 642 (1046)
Q Consensus 621 GL~seFD~dEL~~Lv~~va~~r 642 (1046)
|-+++-.++-+..+|..+++++
T Consensus 373 sagnyv~ger~i~~f~d~a~nr 394 (499)
T COG4372 373 SAGNYVTGERLIPRFCDRATNR 394 (499)
T ss_pred ccCcccccchhhHHHHhhccce
Confidence 3344444444444444444444
No 109
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.23 E-value=3.3e+02 Score=35.59 Aligned_cols=33 Identities=36% Similarity=0.425 Sum_probs=22.3
Q ss_pred HhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001601 277 ENELDSKEEKLDAMKEEMKKYFNDIELKEREFN 309 (1046)
Q Consensus 277 ~k~l~~~~~e~~~~e~e~e~~~kel~~Ke~e~~ 309 (1046)
..-.+...+++.....+.+++..+...-.++++
T Consensus 729 ~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~ 761 (970)
T KOG0946|consen 729 AEASKTQNEELNAALSENKKLENDQELLTKELN 761 (970)
T ss_pred HHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466677777777777777777666666663
No 110
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=70.98 E-value=1.6e+02 Score=31.77 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=7.9
Q ss_pred HHHHhhhhhHHHHHHHHHHhhh
Q 001601 215 EELESKEKLYDEIKKSIIQCET 236 (1046)
Q Consensus 215 ~ElE~KeK~~e~~~k~ie~~~k 236 (1046)
..|+.+.++++.+...+.....
T Consensus 106 ~~l~~~~~~l~~~~~~l~~~~~ 127 (201)
T PF12072_consen 106 EELEKKEEELEQRKEELEEREE 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 111
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.82 E-value=2.2e+02 Score=32.56 Aligned_cols=69 Identities=12% Similarity=0.162 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHH
Q 001601 68 RLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEW 136 (1046)
Q Consensus 68 ~~le~r~k~~e~~e~~l~l~e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~ 136 (1046)
..+.+=.+++--.+.++..+...+++.+++++..++++......|.....++..-+..|.....++.++
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~r 106 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKR 106 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445556677777888888888888888888888888666666666655555555555555443
No 112
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=68.79 E-value=3.2e+02 Score=34.54 Aligned_cols=86 Identities=16% Similarity=0.174 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhHHHhHH
Q 001601 283 KEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSE 362 (1046)
Q Consensus 283 ~~~e~~~~e~e~e~~~kel~~Ke~e~~~~~K~ie~r~kELe~KEkql~~~~~e~e~k~~e~e~k~kEL~s~eK~~~~~~k 362 (1046)
+++.+...+..+.+++..++.|...+..-.+......-+++++ .+++...+..++.--+.+|+-.+.++..--.
T Consensus 183 ~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~------~dee~~~k~aev~lim~eLe~aq~ri~~lE~ 256 (629)
T KOG0963|consen 183 REAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSK------YDEEVAAKAAEVSLIMTELEDAQQRIVFLER 256 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555556666666666665544444444444444443 2445555666666677788888888888888
Q ss_pred HHHHHHHHHHHH
Q 001601 363 ELELKKKHLCVI 374 (1046)
Q Consensus 363 Ele~Kekel~~i 374 (1046)
|.+.++-++..+
T Consensus 257 e~e~L~~ql~~~ 268 (629)
T KOG0963|consen 257 EVEQLREQLAKA 268 (629)
T ss_pred HHHHHHHHHHhh
Confidence 888888888554
No 113
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=67.19 E-value=2e+02 Score=31.56 Aligned_cols=38 Identities=26% Similarity=0.373 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001601 244 ELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELD 281 (1046)
Q Consensus 244 El~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~ 281 (1046)
.+..+...+....++++.+...+..+...+..|...+.
T Consensus 71 r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 71 RLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444555555555555555444443
No 114
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=66.88 E-value=1.9e+02 Score=33.48 Aligned_cols=25 Identities=16% Similarity=0.468 Sum_probs=11.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhh
Q 001601 211 EDYAEELESKEKLYDEIKKSIIQCE 235 (1046)
Q Consensus 211 ee~~~ElE~KeK~~e~~~k~ie~~~ 235 (1046)
.+....|..+-.++.....+++.|+
T Consensus 178 ~~~~~~L~~e~~~L~~~~~e~~~~d 202 (312)
T smart00787 178 RDRKDALEEELRQLKQLEDELEDCD 202 (312)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhCC
Confidence 3334444444444444444444444
No 115
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=65.89 E-value=4.1e+02 Score=34.65 Aligned_cols=146 Identities=19% Similarity=0.275 Sum_probs=75.9
Q ss_pred hhhhHHHHhhhhhhhhhhHHHHHHHHHHhhhhhhhhhHHHhhhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 112 IGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSL--VDQRRLENLIKDFCEQIELKEKDLRKIRSSI 189 (1046)
Q Consensus 112 i~ec~~El~~k~~eL~~~~~~veE~~~e~~~Ke~el~~~~~~~~k~~--~d~~~~~~~i~e~~~el~~ke~el~~~~~~I 189 (1046)
+..|..+++..+-+|......|++-..++.+ ..++ ++. ..+..+...+..+.-++...+.++..+..-|
T Consensus 612 L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~-------~keS--~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki 682 (769)
T PF05911_consen 612 LASCQDQLESLKNQLKESEQKLEELQSELES-------AKES--NSLAETQLKAMKESYESLETRLKDLEAEAEELQSKI 682 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH--HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4556666666666666665555555443331 1110 001 1222233444555555555566777777777
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 190 EECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESL 269 (1046)
Q Consensus 190 e~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~kEl~~~~~~i~e~~kele~kEkqle~~ 269 (1046)
.-...+|+.++.--......-.++..+|++..+......-. ..+.++ ...+|++.-=+++.|+-+=|.+.-+||.+.
T Consensus 683 ~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~--~~~~k~-kqe~EiaaAA~KLAECQeTI~sLGkQLksL 759 (769)
T PF05911_consen 683 SSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLA--NEDKKI-KQEKEIAAAAEKLAECQETIASLGKQLKSL 759 (769)
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhcc--cccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666665543322222333445666666665543322221 222333 234577777777777777777777766554
No 116
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=65.74 E-value=2.6e+02 Score=32.40 Aligned_cols=17 Identities=12% Similarity=0.163 Sum_probs=6.5
Q ss_pred HHHHHHHHhhhhhHHHH
Q 001601 194 KELVMKEKHASSLQSLI 210 (1046)
Q Consensus 194 kel~~ke~~l~~~~~ei 210 (1046)
..|+.+=+.|+....+|
T Consensus 182 ~~L~~e~~~L~~~~~e~ 198 (312)
T smart00787 182 DALEEELRQLKQLEDEL 198 (312)
T ss_pred HHHHHHHHHHHHhHHHH
Confidence 33333333344444443
No 117
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=65.36 E-value=1.7e+02 Score=33.46 Aligned_cols=96 Identities=26% Similarity=0.300 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH----HHHHhHHHhHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHHHHHH
Q 001601 320 QELTLKEKQLKCVQESLEGCRNEFEEKENELI----SVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLI 395 (1046)
Q Consensus 320 kELe~KEkql~~~~~e~e~k~~e~e~k~kEL~----s~eK~~~~~~kEle~Kekel~~i~~~~~e~~kelE~KEKele~~ 395 (1046)
-|+...|+.+......+...-......+..|. ..+-+|+.+--||+..+|.|.++..===.+|+++|.-|.||...
T Consensus 158 ~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 158 LELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 34444444444444443333333333333333 33444666667788888888655443336689999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001601 396 QTMAIGYLKQLKEKEKQFHS 415 (1046)
Q Consensus 396 ~k~~e~~~kele~Kekefes 415 (1046)
...+-.++..+.=-+.+++.
T Consensus 238 Y~~Y~~kfRNl~yLe~qle~ 257 (267)
T PF10234_consen 238 YEIYVEKFRNLDYLEHQLEE 257 (267)
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 88877777666655555443
No 118
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=64.52 E-value=2.8e+02 Score=33.89 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001601 306 REFNGIRKCIEKRSQELTL 324 (1046)
Q Consensus 306 ~e~~~~~K~ie~r~kELe~ 324 (1046)
-++++.++-+|..+.+++.
T Consensus 328 sqleSqr~y~e~~~~e~~q 346 (493)
T KOG0804|consen 328 SQLESQRKYYEQIMSEYEQ 346 (493)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 4666777777766655544
No 119
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=64.00 E-value=5.6 Score=49.97 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001601 179 EKDLRKIRSSIEECEKELV 197 (1046)
Q Consensus 179 e~el~~~~~~Ie~~~kel~ 197 (1046)
-..+++....|+.|.++|+
T Consensus 307 a~r~~klE~~ve~YKkKLe 325 (713)
T PF05622_consen 307 ADRADKLENEVEKYKKKLE 325 (713)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555443
No 120
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=63.87 E-value=1.5e+02 Score=28.94 Aligned_cols=97 Identities=21% Similarity=0.222 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHH
Q 001601 167 LIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELE 246 (1046)
Q Consensus 167 ~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~kEl~ 246 (1046)
.+......|..+..++..+...+....++|..++..|...-...+.+..+-+.|-.. ..+..+...+....+..++.
T Consensus 8 e~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~r---A~k~a~~e~k~~~~k~~ei~ 84 (126)
T PF13863_consen 8 EMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRER---AEKRAEEEKKKKEEKEAEIK 84 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 456667778888888888888888888888888777777777766666555554322 22223333333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001601 247 LTQTSIIELSLELHLEEEKL 266 (1046)
Q Consensus 247 ~~~~~i~e~~kele~kEkql 266 (1046)
....+|..+..++.-.+..+
T Consensus 85 ~l~~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 85 KLKAELEELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443333333
No 121
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=63.75 E-value=72 Score=39.45 Aligned_cols=74 Identities=11% Similarity=0.134 Sum_probs=43.4
Q ss_pred CCchhHHHHHHHHHhHhccccccChHHHHHHHHHhhcccchHHHHHHhCccccchhhhHHhhhcccccCCCchhHHH
Q 001601 758 TLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVATIRFICAFKLTDIAKPEAIFKQ 834 (1046)
Q Consensus 758 ~~~slEalaFLqLLaafGL~seFd~dEL~kLv~~va~rkqapeLcrsLGL~~~idAvrfi~af~Lv~kFpPVpLLK~ 834 (1046)
+++.-.|+..|.-+.+|| ....+.+.+..++. .........|+.+++-.+...|++.+..+ +-....|.-++..
T Consensus 211 ~G~~R~al~~Ldq~~~~~-~~~It~~~V~~vlg-~~~~~~i~~l~~al~~~d~~~al~~l~~l-~~~g~d~~~~l~~ 284 (559)
T PRK05563 211 EGGMRDALSILDQAISFG-DGKVTYEDALEVTG-SVSQEALDDLVDAIVEGDVAKALKILEEL-LDEGKDPNRFIED 284 (559)
T ss_pred CCCHHHHHHHHHHHHHhc-cCCCCHHHHHHHhC-CCCHHHHHHHHHHHHccCHHHHHHHHHHH-HHcCCCHHHHHHH
Confidence 467788999998888897 55566666666543 33444456666666666644444444332 1233445444433
No 122
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=63.44 E-value=3.7e+02 Score=33.28 Aligned_cols=13 Identities=15% Similarity=-0.015 Sum_probs=7.1
Q ss_pred CCChhHHHHHHHH
Q 001601 734 IMNPRVKGEAMKL 746 (1046)
Q Consensus 734 ~is~~Vke~A~kl 746 (1046)
.+++.++.-|+.|
T Consensus 548 ~~t~~~~~~A~~l 560 (563)
T TIGR00634 548 EKSDLTLAHAQEL 560 (563)
T ss_pred CccHHHHHHHHHH
Confidence 4555555555553
No 123
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=63.00 E-value=2.3e+02 Score=30.75 Aligned_cols=162 Identities=17% Similarity=0.268 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHh
Q 001601 126 LNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVM---KEKH 202 (1046)
Q Consensus 126 L~~~~~~veE~~~e~~~Ke~el~~~~~~~~k~~~d~~~~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~---ke~~ 202 (1046)
+.-++..|.+........++.+.+ +......+.+-|...+.+....++.+..+.++-.+ =+..
T Consensus 29 IksLKeei~emkk~e~~~~k~m~e--------------i~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~r 94 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAE--------------ISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKAR 94 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 203 ASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELE--------LTQTSIIELSLELHLEEEKLESLQRIVR 274 (1046)
Q Consensus 203 l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~kEl~--------~~~~~i~e~~kele~kEkqle~~~~~l~ 274 (1046)
+..++.++..+.-|-+..+..|+.+..+-..-..+++.-.-++. ..+.++......+|.++.||.+....-+
T Consensus 95 l~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~n 174 (201)
T PF13851_consen 95 LKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAAN 174 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhhh
Q 001601 275 LRENELDSKEEKLDAMKEEMKKYFNDI 301 (1046)
Q Consensus 275 ~r~k~l~~~~~e~~~~e~e~e~~~kel 301 (1046)
..-.-+......++..-..-...+++|
T Consensus 175 ldp~~~~~v~~~l~~~l~~KN~~I~~L 201 (201)
T PF13851_consen 175 LDPAALSQVSKKLEDVLDSKNQTIKDL 201 (201)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhC
No 124
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=62.83 E-value=2.7e+02 Score=32.96 Aligned_cols=101 Identities=26% Similarity=0.287 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 001601 180 KDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLEL 259 (1046)
Q Consensus 180 ~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~kEl~~~~~~i~e~~kel 259 (1046)
.|+++|+.+-..+...+..=..+|.++..+|..--+.|+++||-+-.+...+... ......+|
T Consensus 220 ~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~e-----------------Yr~~~~~l 282 (359)
T PF10498_consen 220 SHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQE-----------------YRSAQDEL 282 (359)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----------------HHHHHHHH
Confidence 4666666666666666666667777777777666666666666544332222111 11112233
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001601 260 HLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKY 297 (1046)
Q Consensus 260 e~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~e~~ 297 (1046)
.....+....-.-|..+...|-....+++.++.+|+++
T Consensus 283 s~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 283 SEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444455555555555555555555444
No 125
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.05 E-value=2.6e+02 Score=34.81 Aligned_cols=82 Identities=21% Similarity=0.114 Sum_probs=55.8
Q ss_pred CCchhHHHHHHHHHhHhccccccChHHHHHHHHHhhcccchHHHHHHhCccccchhhhHHhhhcccccCCCchhHHHHHH
Q 001601 758 TLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVATIRFICAFKLTDIAKPEAIFKQYLD 837 (1046)
Q Consensus 758 ~~~slEalaFLqLLaafGL~seFd~dEL~kLv~~va~rkqapeLcrsLGL~~~idAvrfi~af~Lv~kFpPVpLLK~Yl~ 837 (1046)
+++.-.++..|+-++.|+ ....+.+.+..++. .......-+|+.+++-.+.-.|++++..+ +.....|+.+|...+.
T Consensus 212 ~Gdlr~al~~LekL~~y~-~~~It~e~V~~ll~-~s~~~~vf~Lidal~~~d~~~al~~l~~L-~~~g~~~~~il~~L~~ 288 (585)
T PRK14950 212 TGSMRDAENLLQQLATTY-GGEISLSQVQSLLG-ISGDEEVKALAEALLAKDLKAALRTLNAV-AADGADLRQFTRDLVE 288 (585)
T ss_pred CCCHHHHHHHHHHHHHhc-CCCCCHHHHHHHhc-CCCHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCHHHHHHHHHH
Confidence 467789999999999986 33455665555543 33344466788888888877777776655 3346678888887666
Q ss_pred HhhHh
Q 001601 838 DNISD 842 (1046)
Q Consensus 838 d~Kk~ 842 (1046)
..+..
T Consensus 289 ~lR~L 293 (585)
T PRK14950 289 YLRQV 293 (585)
T ss_pred HHHHH
Confidence 66654
No 126
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=61.55 E-value=2.5e+02 Score=34.26 Aligned_cols=31 Identities=32% Similarity=0.504 Sum_probs=16.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHH
Q 001601 214 AEELESKEKLYDEIKKSIIQCETKLDCKKKELE 246 (1046)
Q Consensus 214 ~~ElE~KeK~~e~~~k~ie~~~kkle~k~kEl~ 246 (1046)
+..|++..+-+++.+.+++. .+++..+..++
T Consensus 327 ~sqleSqr~y~e~~~~e~~q--sqlen~k~~~e 357 (493)
T KOG0804|consen 327 TSQLESQRKYYEQIMSEYEQ--SQLENQKQYYE 357 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHH--HHHHhHHHHHH
Confidence 45556666666655555544 34444444444
No 127
>PRK10869 recombination and repair protein; Provisional
Probab=58.13 E-value=4.5e+02 Score=32.64 Aligned_cols=9 Identities=22% Similarity=0.667 Sum_probs=4.4
Q ss_pred CchhhHHHh
Q 001601 534 DPASLVLDA 542 (1046)
Q Consensus 534 DPAkLVLDa 542 (1046)
+|.-+|+|-
T Consensus 452 ~~~~li~DE 460 (553)
T PRK10869 452 ETPALIFDE 460 (553)
T ss_pred CCCEEEEEC
Confidence 345555554
No 128
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=58.03 E-value=8.3 Score=48.51 Aligned_cols=40 Identities=25% Similarity=0.347 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001601 167 LIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSL 206 (1046)
Q Consensus 167 ~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~ 206 (1046)
.+.....++...+.++...+..++.+..++...+..+.++
T Consensus 179 ~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e~e~~~~~L 218 (722)
T PF05557_consen 179 QAENAESQIQSLESELEELKEQLEELQSELQEAEQQLQEL 218 (722)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666666666666666655555554444
No 129
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=57.83 E-value=4.6e+02 Score=32.60 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=11.7
Q ss_pred hhHhhHHHHHHhHHHHHHhhhc
Q 001601 13 LAESKKEILRRSYDLAHAQANS 34 (1046)
Q Consensus 13 ~~~~k~e~~~~~~~~~~~qas~ 34 (1046)
|..||.++..+.+..==.++..
T Consensus 34 Le~~k~~l~~~pv~~el~kvk~ 55 (569)
T PRK04778 34 LEERKQELENLPVNDELEKVKK 55 (569)
T ss_pred HHHHHHHHhcCCHHHHHHHHhc
Confidence 4455666666555554444443
No 130
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.62 E-value=64 Score=39.96 Aligned_cols=79 Identities=13% Similarity=0.006 Sum_probs=39.3
Q ss_pred CchhHHHHHHHHHhHhccccccChHHHHHHHHHhhcccchHHHHHHhCccccchhhhHHhhhcccccCCCchhHHHHHHH
Q 001601 759 LNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVATIRFICAFKLTDIAKPEAIFKQYLDD 838 (1046)
Q Consensus 759 ~~slEalaFLqLLaafGL~seFd~dEL~kLv~~va~rkqapeLcrsLGL~~~idAvrfi~af~Lv~kFpPVpLLK~Yl~d 838 (1046)
++.-.|+..|.-+.+|+= ...+.+++..++..+.+ ...-.++.+++-.+.-.|++++..+ +.....|.-+|...+..
T Consensus 212 G~lr~al~~Ldqliay~g-~~It~edV~~llG~~~~-~~l~~ll~al~~~d~~~al~~l~~l-~~~G~~~~~~l~~Ll~~ 288 (576)
T PRK14965 212 GSMRDSLSTLDQVLAFCG-DAVGDDDVAELLGVVDR-RLLLDISAAVFGRDTRALLEIVERV-DEFGYNMRQFCQELIDH 288 (576)
T ss_pred CCHHHHHHHHHHHHHhcc-CCCCHHHHHHHhCCCCH-HHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHH
Confidence 455678888877777753 34555655555433332 2344555555554433344443332 23344454444443333
Q ss_pred hh
Q 001601 839 NI 840 (1046)
Q Consensus 839 ~K 840 (1046)
.|
T Consensus 289 ~R 290 (576)
T PRK14965 289 LR 290 (576)
T ss_pred HH
Confidence 33
No 131
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=53.58 E-value=2.3e+02 Score=36.72 Aligned_cols=59 Identities=22% Similarity=0.224 Sum_probs=43.1
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 217 LESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRL 275 (1046)
Q Consensus 217 lE~KeK~~e~~~k~ie~~~kkle~k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~ 275 (1046)
+.....+++..+..++..+++++.+..+++....+++....+++.+..+++.+...+..
T Consensus 511 ~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~ 569 (782)
T PRK00409 511 IGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLE 569 (782)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556688888888888888888888888877777777777777777777666555433
No 132
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=53.32 E-value=4.2e+02 Score=30.78 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001601 420 LDERWQDLEIKERKFEERV 438 (1046)
Q Consensus 420 leer~KelesKek~fe~rv 438 (1046)
++...+.|.++...-..+.
T Consensus 240 ~~k~ik~l~~~~~~~~~~~ 258 (294)
T COG1340 240 LEKKIKALRAKEKAAKRRE 258 (294)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333
No 133
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=53.26 E-value=4.1e+02 Score=30.65 Aligned_cols=38 Identities=26% Similarity=0.353 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001601 176 ELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDY 213 (1046)
Q Consensus 176 ~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~ 213 (1046)
.....+|.+....|+...+++...+.++..+...|+++
T Consensus 212 ~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~ 249 (325)
T PF08317_consen 212 EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEEL 249 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444
No 134
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=52.53 E-value=37 Score=39.86 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=10.5
Q ss_pred CChhHHHHHHHHHHH
Q 001601 581 INPQVRDEAMKVAGE 595 (1046)
Q Consensus 581 is~~VKeeAkkLA~e 595 (1046)
....+|++..+.|-+
T Consensus 257 l~f~~KE~IL~aAR~ 271 (370)
T PF02994_consen 257 LRFQDKEKILKAARE 271 (370)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHh
Confidence 456788888777754
No 135
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.40 E-value=4.1e+02 Score=30.42 Aligned_cols=73 Identities=10% Similarity=0.160 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 001601 164 LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCET 236 (1046)
Q Consensus 164 ~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~k 236 (1046)
=+..|.+...+....+.+++.+...|+...++..+.+........+|..+..+|.-=+..+.+|..-+..+.+
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raR 108 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRAR 108 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777788888888888888887777777776666666666666666666656666666555555544
No 136
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=51.79 E-value=2.7e+02 Score=28.16 Aligned_cols=56 Identities=14% Similarity=0.308 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhh
Q 001601 246 ELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDI 301 (1046)
Q Consensus 246 ~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~e~~~kel 301 (1046)
......+..+..++...+.+.+.....+|.+..+++.....+.-++..++..+.++
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~~l 119 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQIDQL 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444556666778888888888888899999888888888888888888777554
No 137
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=51.46 E-value=6.4e+02 Score=32.60 Aligned_cols=16 Identities=25% Similarity=0.119 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 001601 183 RKIRSSIEECEKELVM 198 (1046)
Q Consensus 183 ~~~~~~Ie~~~kel~~ 198 (1046)
+..+.+|+...+-|+.
T Consensus 557 ~~ar~ei~~rv~~Lk~ 572 (717)
T PF10168_consen 557 DLAREEIQRRVKLLKQ 572 (717)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555444
No 138
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=51.33 E-value=7.2e+02 Score=32.93 Aligned_cols=17 Identities=18% Similarity=0.479 Sum_probs=13.5
Q ss_pred chhhhHhHHHHHHhhhh
Q 001601 715 EDNVKCCILVLEKLKEV 731 (1046)
Q Consensus 715 ~~~~rsCilLLE~L~~i 731 (1046)
..+..+|..||++.+.+
T Consensus 787 e~iL~~ct~lm~aI~~L 803 (980)
T KOG0980|consen 787 ESILSACTALMEAIMAL 803 (980)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34567999999998876
No 139
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=50.00 E-value=5.8e+02 Score=31.47 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001601 259 LHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEM 294 (1046)
Q Consensus 259 le~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~ 294 (1046)
|.-.-.=+...++.|..-++.-+..+.+++++...+
T Consensus 392 lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~ny 427 (527)
T PF15066_consen 392 LQNLQEALANTQKHLQESRNEKETLQLELKKIKANY 427 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhH
Confidence 333334455555666555555666667777666555
No 140
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=49.30 E-value=4.4e+02 Score=31.26 Aligned_cols=101 Identities=16% Similarity=0.295 Sum_probs=45.0
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001601 201 KHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENEL 280 (1046)
Q Consensus 201 ~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l 280 (1046)
.|+..+..-...+..-+..=..+++....+|..---+|.++++-++ .+++.+..+.-..-.++.+..
T Consensus 220 ~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN---~qle~l~~eYr~~~~~ls~~~---------- 286 (359)
T PF10498_consen 220 SHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYIN---NQLEPLIQEYRSAQDELSEVQ---------- 286 (359)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHH----------
Confidence 4444444443334333333344444455555555555555555555 123333333333333333333
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001601 281 DSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKR 318 (1046)
Q Consensus 281 ~~~~~e~~~~e~e~e~~~kel~~Ke~e~~~~~K~ie~r 318 (1046)
.+......-+.++..+|.---.+++.+...++.|
T Consensus 287 ----~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 287 ----EKYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred ----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333344444444444445555555555554
No 141
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=47.55 E-value=4.8e+02 Score=29.84 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=35.4
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 001601 202 HASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELS 256 (1046)
Q Consensus 202 ~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~kEl~~~~~~i~e~~ 256 (1046)
+|+.-+.+-.++..||++---|++-+.+.++.+..++ ..|++..+++.+-..
T Consensus 35 El~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl---~~E~e~~Kek~e~q~ 86 (333)
T KOG1853|consen 35 ELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRL---TTEQERNKEKQEDQR 86 (333)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3444455556778888888888888888888888777 556655544444443
No 142
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=47.48 E-value=3.9e+02 Score=34.70 Aligned_cols=68 Identities=28% Similarity=0.356 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 001601 168 IKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCE 235 (1046)
Q Consensus 168 i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~ 235 (1046)
|..-..-+..-..+++.+-..++..+.+++.+..++.....+++....+++.+.+++++....+....
T Consensus 504 i~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~ 571 (782)
T PRK00409 504 IEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEA 571 (782)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555666777777777777777777777777777777777777777777766665554443
No 143
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=47.27 E-value=2.3e+02 Score=32.80 Aligned_cols=10 Identities=30% Similarity=0.354 Sum_probs=4.8
Q ss_pred hHhHHHHHHh
Q 001601 719 KCCILVLEKL 728 (1046)
Q Consensus 719 rsCilLLE~L 728 (1046)
++|=+||.-|
T Consensus 292 ~AlK~lLtnl 301 (314)
T PF04111_consen 292 KALKYLLTNL 301 (314)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3455555444
No 144
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=46.19 E-value=7.8e+02 Score=31.86 Aligned_cols=112 Identities=20% Similarity=0.179 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh-hhhhHHHHHHHHHHhhhhhhhhH
Q 001601 164 LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELES-KEKLYDEIKKSIIQCETKLDCKK 242 (1046)
Q Consensus 164 ~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~-KeK~~e~~~k~ie~~~kkle~k~ 242 (1046)
+..+.++++-.+-+.|+.+-..-++-...+++.++ + .+++..-|-. --++++++++.+...-.++--+.
T Consensus 400 ~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~ks-------l---k~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~q 469 (961)
T KOG4673|consen 400 VSSLREEYHQRVATLEKKVQALTKERDALRREQKS-------L---KKELAAALLKDELAEKDEIINQLMAEGEKLSKKQ 469 (961)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------H---HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33456666666666666544433333333333221 0 0112222211 12445677777776666652222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 001601 243 KELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEE 285 (1046)
Q Consensus 243 kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~ 285 (1046)
-.-..+-.+++-+.|+-+.++++....+..|.+.+..|.+...
T Consensus 470 l~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~ 512 (961)
T KOG4673|consen 470 LAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILR 512 (961)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 1222333334444466666677777777777777777665533
No 145
>PRK12705 hypothetical protein; Provisional
Probab=46.12 E-value=6.8e+02 Score=31.14 Aligned_cols=15 Identities=40% Similarity=0.421 Sum_probs=7.8
Q ss_pred CcHHHHHHHHHHHhh
Q 001601 606 NSLEVLGFLHLLAAY 620 (1046)
Q Consensus 606 nslEalgFLqLLA~y 620 (1046)
+|++|-.+...||.+
T Consensus 327 HSl~VA~lA~~LA~~ 341 (508)
T PRK12705 327 HSLEVAHLAGIIAAE 341 (508)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555443
No 146
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=46.09 E-value=4.4e+02 Score=30.28 Aligned_cols=31 Identities=13% Similarity=0.389 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 418 EALDERWQDLEIKERKFEERVKEFELREKEI 448 (1046)
Q Consensus 418 k~leer~KelesKek~fe~rvKE~elKEkq~ 448 (1046)
.+..+|+-+++.+--++..++.-+.+|...|
T Consensus 231 ~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 231 TEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555555555555555555444
No 147
>KOG4786 consensus Ubinuclein, nuclear protein interacting with cellular and viral transcription factors [Transcription; Signal transduction mechanisms]
Probab=44.70 E-value=29 Score=43.68 Aligned_cols=11 Identities=45% Similarity=0.504 Sum_probs=7.8
Q ss_pred ccccCcccchh
Q 001601 1001 VALSGGQMQFD 1011 (1046)
Q Consensus 1001 ~~~~~~~~~~~ 1011 (1046)
+.-+||+.||.
T Consensus 980 S~~s~GV~~~~ 990 (1136)
T KOG4786|consen 980 SSSSGGVNQFY 990 (1136)
T ss_pred cCCchhHHHHh
Confidence 34567888887
No 148
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=43.10 E-value=5e+02 Score=28.70 Aligned_cols=32 Identities=25% Similarity=0.222 Sum_probs=15.6
Q ss_pred HHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHH
Q 001601 107 LVRKRIGECECELQLKEGELNLVKKSVEEWLE 138 (1046)
Q Consensus 107 ~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~ 138 (1046)
.+++.|+=...|++.-+..+.+...-+++-..
T Consensus 8 ~lnrri~~leeele~aqErl~~a~~KL~Eaeq 39 (205)
T KOG1003|consen 8 ALNRRIQLLEEELDRAQERLATALQKLEEAEQ 39 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444445555555555555544444444
No 149
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=41.65 E-value=3e+02 Score=31.53 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=9.7
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHH
Q 001601 349 ELISVEKLIDKCSEELELKKKHL 371 (1046)
Q Consensus 349 EL~s~eK~~~~~~kEle~Kekel 371 (1046)
.|.+.+..++...++|..+++++
T Consensus 201 ~l~~~~~ELe~~~EeL~~~Eke~ 223 (269)
T PF05278_consen 201 KLELKKEELEELEEELKQKEKEV 223 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444
No 150
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=40.80 E-value=4.5e+02 Score=34.16 Aligned_cols=56 Identities=21% Similarity=0.185 Sum_probs=36.3
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 218 ESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIV 273 (1046)
Q Consensus 218 E~KeK~~e~~~k~ie~~~kkle~k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l 273 (1046)
..-..+++.....++..+++++.+..+++....+++....+++.+..+|+.+...+
T Consensus 507 ~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~ 562 (771)
T TIGR01069 507 GEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNK 562 (771)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555777777777777777777777766666666666666666666655544443
No 151
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.74 E-value=4.6e+02 Score=32.28 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=50.5
Q ss_pred CCchhHHHHHHHHHhHhccccccChHHHHHHHHHhhcccchHHHHHHhCccccchhhhHHhhhcccccCCCchhHHHHHH
Q 001601 758 TLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVATIRFICAFKLTDIAKPEAIFKQYLD 837 (1046)
Q Consensus 758 ~~~slEalaFLqLLaafGL~seFd~dEL~kLv~~va~rkqapeLcrsLGL~~~idAvrfi~af~Lv~kFpPVpLLK~Yl~ 837 (1046)
+++.-.|+..|+-+.+|| ...+.+.+..++ ...+....-+|+.+++-.+.-.|++++... +...++|..|+..-..
T Consensus 208 ~GdlR~aln~Lekl~~~~--~~It~~~V~~~l-~~~~~~~if~Li~al~~~d~~~Al~~l~~L-l~~G~~~~~Il~~L~~ 283 (504)
T PRK14963 208 DGAMRDAESLLERLLALG--TPVTRKQVEEAL-GLPPQERLRGIAAALAQGDAAEALSGAAQL-YRDGFAARTLVEGLLE 283 (504)
T ss_pred CCCHHHHHHHHHHHHhcC--CCCCHHHHHHHH-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCHHHHHHHHHH
Confidence 355667888888887774 355666655554 344555577777777766766676666653 3345778777766555
Q ss_pred Hhh
Q 001601 838 DNI 840 (1046)
Q Consensus 838 d~K 840 (1046)
..+
T Consensus 284 ~~r 286 (504)
T PRK14963 284 AFR 286 (504)
T ss_pred HHH
Confidence 554
No 152
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=40.27 E-value=9.7e+02 Score=31.24 Aligned_cols=181 Identities=18% Similarity=0.189 Sum_probs=95.2
Q ss_pred HhHhhHHHHHhHHHHHHHHHhhhhh----HHHHhhhhhhhhhhHHHHHHHHHHhhhhhhhhhHHHhhhhhhhhHHHHHHH
Q 001601 91 IKECNFELACKEKQLELVRKRIGEC----ECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLEN 166 (1046)
Q Consensus 91 ~ee~~~ele~Kek~l~~~r~~i~ec----~~El~~k~~eL~~~~~~veE~~~e~~~Ke~el~~~~~~~~k~~~d~~~~~~ 166 (1046)
.++-+..+++-.......+.++++= ++-+-+--++=.++.+...+.+.++.-|.-.+.+ +++
T Consensus 47 a~e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq--------------~ee 112 (916)
T KOG0249|consen 47 AEEMNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQ--------------NEE 112 (916)
T ss_pred HHHHHHHHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhch--------------hHH
Confidence 3344444444444444444443332 2444555556666777777777777777777777 556
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh-
Q 001601 167 LIKDFCEQIELKEKDLRKIRS---------SIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCET- 236 (1046)
Q Consensus 167 ~i~e~~~el~~ke~el~~~~~---------~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~k- 236 (1046)
+...++.++++-+.+|-+.-. ......+++---+.|-..++.-+..++.+++.+--.+...+...+-...
T Consensus 113 kn~slqerLelaE~~l~qs~rae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh 192 (916)
T KOG0249|consen 113 KNRSLQERLELAEPKLQQSLRAETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEH 192 (916)
T ss_pred hhhhhhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 677788888888888776655 1122222222223333333444445555555555444443333322211
Q ss_pred ----------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001601 237 ----------KLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDA 289 (1046)
Q Consensus 237 ----------kle~k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~e~~~ 289 (1046)
.+.-..+|.-...+.++.+..++++.+++++...++ +++|..-.+.+.+
T Consensus 193 ~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~----k~rl~~d~E~Lr~ 251 (916)
T KOG0249|consen 193 NKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHD----KDKLRTDIEDLRG 251 (916)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHHHH
Confidence 123334455555666666667777777766654433 4444444444443
No 153
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=39.61 E-value=1.1e+03 Score=31.81 Aligned_cols=33 Identities=21% Similarity=0.155 Sum_probs=24.8
Q ss_pred HHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhh
Q 001601 89 RRIKECNFELACKEKQLELVRKRIGECECELQL 121 (1046)
Q Consensus 89 ~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~ 121 (1046)
--...|+.+|+-.+.++...|-.|+|---|-.+
T Consensus 198 enll~lr~eLddleae~~klrqe~~e~l~ea~r 230 (1195)
T KOG4643|consen 198 ENLLRLRNELDDLEAEISKLRQEIEEFLDEAHR 230 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345578899999999999999888877644333
No 154
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.67 E-value=2.5e+02 Score=35.32 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=13.0
Q ss_pred chHHHHHHHHHHHhhhh
Q 001601 882 LIENIKQRIVQLEMAKA 898 (1046)
Q Consensus 882 p~~~L~kRI~qLEk~ka 898 (1046)
+...|..||.+||.+-.
T Consensus 368 ~~~~~~~~~~~le~~~~ 384 (584)
T PRK14952 368 AESALLQRVERIETRLD 384 (584)
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 45678999999987543
No 155
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=37.82 E-value=4.3e+02 Score=27.07 Aligned_cols=77 Identities=12% Similarity=0.124 Sum_probs=37.9
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001601 333 QESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEK 409 (1046)
Q Consensus 333 ~~e~e~k~~e~e~k~kEL~s~eK~~~~~~kEle~Kekel~~i~~~~~e~~kelE~KEKele~~~k~~e~~~kele~K 409 (1046)
........++++.....|...++++-+|+.-+..|-.+...+-+.++.-+.++-..-.++......+...+..|+.|
T Consensus 42 ~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~k 118 (126)
T PF07889_consen 42 SDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGK 118 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555556666666666666555555555544444444444444333344444444444444444444
No 156
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=37.81 E-value=5.2e+02 Score=27.43 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=9.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHH
Q 001601 297 YFNDIELKEREFNGIRKCIEKR 318 (1046)
Q Consensus 297 ~~kel~~Ke~e~~~~~K~ie~r 318 (1046)
.-.-..-|++++.++...|...
T Consensus 103 l~~~cqKKEkEykealea~nEk 124 (159)
T PF04949_consen 103 LGQSCQKKEKEYKEALEAFNEK 124 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334445554555544443
No 157
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.78 E-value=5e+02 Score=32.80 Aligned_cols=79 Identities=10% Similarity=-0.023 Sum_probs=34.9
Q ss_pred CchhHHHHHHHHHhHhccccccChHHHHHHHHHhhcccchHHHHHHhCccccchhhhHHhhhcccccCCCchhHHHHHHH
Q 001601 759 LNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVATIRFICAFKLTDIAKPEAIFKQYLDD 838 (1046)
Q Consensus 759 ~~slEalaFLqLLaafGL~seFd~dEL~kLv~~va~rkqapeLcrsLGL~~~idAvrfi~af~Lv~kFpPVpLLK~Yl~d 838 (1046)
++.-.|+..|.-+++|.=.. -+.+.+...+. +......-+|+.+++-.+.-.|+..+..+ +...++|..||.--+..
T Consensus 214 gdlr~al~~Lekl~~y~~~~-It~~~V~~~l~-~~~~~~iF~L~dai~~~~~~~al~ll~~L-l~~g~~~~~iL~~L~~~ 290 (614)
T PRK14971 214 GGMRDALSIFDQVVSFTGGN-ITYKSVIENLN-ILDYDYYFRLTDALLAGKVSDSLLLFDEI-LNKGFDGSHFITGLASH 290 (614)
T ss_pred CCHHHHHHHHHHHHHhccCC-ccHHHHHHHhC-CCCHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCHHHHHHHHHHH
Confidence 44556777777766663111 22222222221 11122223444444444444444444332 35678886555443333
Q ss_pred hh
Q 001601 839 NI 840 (1046)
Q Consensus 839 ~K 840 (1046)
.|
T Consensus 291 fR 292 (614)
T PRK14971 291 FR 292 (614)
T ss_pred HH
Confidence 33
No 158
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=37.65 E-value=2.2e+02 Score=30.14 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 001601 168 IKDFCEQIELKEKDLRKIRSSIEECEKELVM-KEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCET 236 (1046)
Q Consensus 168 i~e~~~el~~ke~el~~~~~~Ie~~~kel~~-ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~k 236 (1046)
+.-+..++-..++..++.++..+...+..++ ........+.+|+++.+||+.++++.+..++..+.-.+
T Consensus 120 ~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 120 VHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555555555555444333222 23344455566666666666666666666665554443
No 159
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.61 E-value=9.1e+02 Score=29.84 Aligned_cols=46 Identities=20% Similarity=0.113 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001601 167 LIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDY 213 (1046)
Q Consensus 167 ~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~ 213 (1046)
.|.++++++++- .++.+.++.-.+.-++|+++.+|+++...+++-+
T Consensus 232 e~eel~eq~een-eel~ae~kqh~v~~~ales~~sq~~e~~selE~l 277 (521)
T KOG1937|consen 232 EVEELTEQNEEN-EELQAEYKQHLVEYKALESKRSQFEEQNSELEKL 277 (521)
T ss_pred hHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 477888888877 6777888888888999999999999998887643
No 160
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=36.49 E-value=7e+02 Score=32.47 Aligned_cols=58 Identities=21% Similarity=0.214 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001601 175 IELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSII 232 (1046)
Q Consensus 175 l~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie 232 (1046)
+.....+++.+-..++....+++.+..+++....++++...+++.+.+++++.++++.
T Consensus 506 ~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~ 563 (771)
T TIGR01069 506 YGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKK 563 (771)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666666666666666666666666666666555444
No 161
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=36.27 E-value=1.2e+03 Score=31.11 Aligned_cols=59 Identities=32% Similarity=0.369 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 207 QSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRI 272 (1046)
Q Consensus 207 ~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~kEl~~~~~~i~e~~kele~kEkqle~~~~~ 272 (1046)
+.-|.+..++..-+.-+++++.+.-..-+.|.++..+-+ +....|+...-.+++.....
T Consensus 458 ~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~l-------e~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 458 EQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKAL-------ESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444333333332222 23334444444444444444
No 162
>PF13388 DUF4106: Protein of unknown function (DUF4106)
Probab=36.13 E-value=2e+02 Score=33.31 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCchhHHHH
Q 001601 738 RVKGEAMKLAVEWKTKMGVGTLNSLEVLV 766 (1046)
Q Consensus 738 ~Vke~A~klA~~WK~kl~~~~~~slEala 766 (1046)
.+-..|..|--....+|-.+..+|-||++
T Consensus 21 qanakaaqligsirtkiqadedssnealm 49 (422)
T PF13388_consen 21 QANAKAAQLIGSIRTKIQADEDSSNEALM 49 (422)
T ss_pred hhhhHHHHHHHHHHhhhhcccccchhhhh
Confidence 33334444444445555555566667765
No 163
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=36.07 E-value=1.4e+03 Score=31.72 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 167 LIKDFCEQIELKEKDLRKIRSSIE 190 (1046)
Q Consensus 167 ~i~e~~~el~~ke~el~~~~~~Ie 190 (1046)
.|.+...-|..-+.=|-.++.-|.
T Consensus 1519 ~I~e~v~sL~nVd~IL~~T~~di~ 1542 (1758)
T KOG0994|consen 1519 EIQERVASLPNVDAILSRTKGDIA 1542 (1758)
T ss_pred HHHHHHHhcccHHHHHHhhhhhHH
Confidence 444444445555555555555443
No 164
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=35.91 E-value=7.3e+02 Score=28.52 Aligned_cols=40 Identities=28% Similarity=0.329 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001601 241 KKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENEL 280 (1046)
Q Consensus 241 k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l 280 (1046)
-+.||..-+.-..|+.+++++-=-|++-+-+.+..|-.++
T Consensus 32 ~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl 71 (333)
T KOG1853|consen 32 MREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRL 71 (333)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666667777777777777777777777777776665
No 165
>PRK09039 hypothetical protein; Validated
Probab=35.04 E-value=8e+02 Score=28.76 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 001601 252 IIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQ 320 (1046)
Q Consensus 252 i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~e~~~kel~~Ke~e~~~~~K~ie~r~k 320 (1046)
|..+..|++..+.|+....-.|..=+.+.......++.++.++...+.+ +..+|...+..|-.++.
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~---~~~~l~~~~~~~~~~l~ 204 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ---RVQELNRYRSEFFGRLR 204 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444333322 45566667777766654
No 166
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=34.46 E-value=1e+03 Score=29.74 Aligned_cols=34 Identities=18% Similarity=0.366 Sum_probs=19.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 412 QFHSLKEALDERWQDLEIKERKFEERVKEFELRE 445 (1046)
Q Consensus 412 efeskek~leer~KelesKek~fe~rvKE~elKE 445 (1046)
+++.....+.+.+..|...++.....+..|..+-
T Consensus 390 ~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l 423 (560)
T PF06160_consen 390 EIEEEQEEINESLQSLRKDEKEAREKLQKLKQKL 423 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445566666666666666666666654433
No 167
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=34.14 E-value=83 Score=37.03 Aligned_cols=8 Identities=13% Similarity=-0.072 Sum_probs=2.7
Q ss_pred HHHHHHHH
Q 001601 267 ESLQRIVR 274 (1046)
Q Consensus 267 e~~~~~l~ 274 (1046)
.++..+++
T Consensus 143 ~~Ri~e~E 150 (370)
T PF02994_consen 143 NSRIDELE 150 (370)
T ss_dssp -HHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 168
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=34.13 E-value=5.7e+02 Score=28.23 Aligned_cols=124 Identities=17% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHhhhchhheecchhchHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHhHhhHH
Q 001601 18 KEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFE 97 (1046)
Q Consensus 18 ~e~~~~~~~~~~~qas~~l~~~l~w~~le~h~~s~~~~~e~~~~~~~~k~~~le~r~k~~e~~e~~l~l~e~~~ee~~~e 97 (1046)
|+-|+-|=.++..+++-|++|--|-+++-.-++.+...+..--..+++|..-++.+..++..+..+-.++..++.-...+
T Consensus 16 KqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~E 95 (202)
T PF06818_consen 16 KQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAE 95 (202)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHH
Q ss_pred HHHhHHHHHHH-----------------------HHhhhhhHHHHhhhhhhhhhhHHHHHHHHHHhh
Q 001601 98 LACKEKQLELV-----------------------RKRIGECECELQLKEGELNLVKKSVEEWLEKLD 141 (1046)
Q Consensus 98 le~Kek~l~~~-----------------------r~~i~ec~~El~~k~~eL~~~~~~veE~~~e~~ 141 (1046)
+.--...+..+ -..++.+..+++.-+.+|..-|+-.++.-..|+
T Consensus 96 l~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe 162 (202)
T PF06818_consen 96 LAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFE 162 (202)
T ss_pred HHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHH
No 169
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=34.10 E-value=1.2e+03 Score=30.57 Aligned_cols=207 Identities=21% Similarity=0.249 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHH
Q 001601 164 LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKK 243 (1046)
Q Consensus 164 ~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~k 243 (1046)
++..|.++..+|..-.-|...+...+....+-+..=.+.....+.++..+...|++-+|+.-..+-++-...|.++-+-.
T Consensus 90 le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~ 169 (769)
T PF05911_consen 90 LEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNE 169 (769)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666555555555554444444444455556666667777777777766666666666655555
Q ss_pred HHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHhhhhhH-HHHHHHHH-------
Q 001601 244 ELELTQTSIIELSLE-LHLEEE--KLESLQRIVRL-RENELDSKEEKLDAMKEEMKKYFNDIEL-KEREFNGI------- 311 (1046)
Q Consensus 244 El~~~~~~i~e~~ke-le~kEk--qle~~~~~l~~-r~k~l~~~~~e~~~~e~e~e~~~kel~~-Ke~e~~~~------- 311 (1046)
|.+.-....+--.|| +|+.+| +||..|.-|.. =+|+|=| ---+..|..+++.+=.+..- .-+-....
T Consensus 170 E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpg-paa~a~mk~ev~~~~~~~~~~r~r~~~~~~~~~~~~ 248 (769)
T PF05911_consen 170 EREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPG-PAALAQMKNEVESLGRDSGENRRRRSPSRPSSPHDF 248 (769)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-hHHHHHhHHHHHHhccccccccCCCCCCcccccccc
Confidence 555444344433333 444443 45554443321 2233322 12344455555544211100 00000000
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhHHHhHHHHHHHHHHH
Q 001601 312 -RKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHL 371 (1046)
Q Consensus 312 -~K~ie~r~kELe~KEkql~~~~~e~e~k~~e~e~k~kEL~s~eK~~~~~~kEle~Kekel 371 (1046)
-.....+.++-+..=.+|..+..+..-...=+-.+-.||...+--+-..+-.|-..+.|+
T Consensus 249 ~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 249 SPQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred cccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000111233334444445555554444444444555566666655555555555555555
No 170
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=33.97 E-value=2.4e+02 Score=33.75 Aligned_cols=146 Identities=11% Similarity=-0.009 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHhhhhhhcccCCCCCChhhHHhhhhcCCc-CCCCCCCCCCCCC
Q 001601 857 AMDFEVNALTFLIECFKENKLESSLLIENIKQRIVQLEMAKADCRRHSTPAPSATIQLQLASRNNY-NIGTSTPTNQPVP 935 (1046)
Q Consensus 857 a~~kEl~aLraVIKcIee~KLEse~p~~~L~kRI~qLEk~ka~kkr~~~~~~~q~~~~~~~~~~~~-~~~~~~p~~~~~~ 935 (1046)
-..+-+.--.-=+|-|+ +=++..|.+-.+---.-+-+.+.+-.-...+++. ...+.+.. ..+.++|+++.|+
T Consensus 102 qlqkkL~~y~~rLkeie--ng~~r~s~~~sr~~~~gi~~~~~~~~a~~~~~~~-----~~e~~~~~~~g~~~s~~~~~~~ 174 (455)
T KOG3850|consen 102 QLQKKLEQYHRRLKEIE--NGESRPSKDKSRDFPTGIRKAKGMTEAMVNPIEF-----AQEVKKAFSAGNSNSTQNGVTG 174 (455)
T ss_pred HHHHHHHHHHHHHHHHh--cCCCCCCcchhhhhhhHHHHHhcccccccccccc-----hhhhhhccccCcccCccccccC
Confidence 34555555556666676 5667777777777777777765544322222221 11111122 3344555555555
Q ss_pred CCCCCCCccCCcccCCccCCcCchhhhhcCCCCC----C-CcccCCCCcccccccccccCCCCcccCCCcccccCcccch
Q 001601 936 SHTNQPQHSGINHSIGFSASREQPQLQNNYKRPR----I-EPLTTRAYMPQIPASVNLHRSSPTMQHGPGVALSGGQMQF 1010 (1046)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~kr~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1046)
++..-.-+.-.+.+++.+.+-.- .+-.++++|- . +|.+|=...|-.-+ ..-.+|. .||+|..||.--|
T Consensus 175 ~p~e~asl~r~~~~g~~d~~v~l-~~~~~~~~~e~~~~~l~~~~tl~~~~~~gs--~~E~~S~----~~gSa~~~~n~~~ 247 (455)
T KOG3850|consen 175 KPREFASLIRNTKFGSADNIVHL-KAVLENFGPERNARALPGSATLVSPPKYGS--DDECSSS----RPGSAADETNNVP 247 (455)
T ss_pred CchhhhhcccCCCcccCCCcccc-cccccccchhhhhccCCCcccccCCCCCCC--CcccccC----CCCccccccCCCC
Confidence 44333333333343443333211 1122233331 1 33333332222211 1222222 7899999999999
Q ss_pred hhhhhc
Q 001601 1011 DHIASN 1016 (1046)
Q Consensus 1011 ~~~~~~ 1016 (1046)
.|+++|
T Consensus 248 g~~~~n 253 (455)
T KOG3850|consen 248 GHGGAN 253 (455)
T ss_pred CCCCCC
Confidence 999866
No 171
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=33.84 E-value=5.4e+02 Score=26.40 Aligned_cols=64 Identities=13% Similarity=0.200 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhh
Q 001601 160 DQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKL 223 (1046)
Q Consensus 160 d~~~~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~ 223 (1046)
-.++|.+-.+...++|+.-...+..+++++..+..-|..|......+...|.+-+.++-..-.+
T Consensus 37 Trr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~ 100 (126)
T PF07889_consen 37 TRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQ 100 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3455777888888888888888888888888777777776666666666665555544444333
No 172
>KOG1960 consensus Predicted RNA-binding protein, contains KH domains [RNA processing and modification]
Probab=33.67 E-value=50 Score=39.33 Aligned_cols=25 Identities=16% Similarity=-0.005 Sum_probs=12.1
Q ss_pred hHHHHHHhCccccchhhhHHhhhcc
Q 001601 798 APETCRALGFTDIVATIRFICAFKL 822 (1046)
Q Consensus 798 apeLcrsLGL~~~idAvrfi~af~L 822 (1046)
|+.+|.-|--+.+|+--||++-.+.
T Consensus 285 A~r~~~nl~~~v~~~~sr~~~~~~~ 309 (531)
T KOG1960|consen 285 APRRKWNLEEKVYINLSRGFHRQAI 309 (531)
T ss_pred chhHHHhHHHHHHHHhhhhhhhccc
Confidence 6666655543334444444444333
No 173
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=32.97 E-value=7.8e+02 Score=31.11 Aligned_cols=81 Identities=12% Similarity=0.055 Sum_probs=50.3
Q ss_pred CCchhHHHHHHHHHhHhccccccChHHHHHHHHHhhcccchHHHHHHhCccccchhhhHHhhhcccccCCCchhHHHHHH
Q 001601 758 TLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVATIRFICAFKLTDIAKPEAIFKQYLD 837 (1046)
Q Consensus 758 ~~~slEalaFLqLLaafGL~seFd~dEL~kLv~~va~rkqapeLcrsLGL~~~idAvrfi~af~Lv~kFpPVpLLK~Yl~ 837 (1046)
+++.-.++..|.-+.+|| ....+.+.+..++.. +.+...-.|+.+++-.+.-.|++.+... +....+|+.+|..-+.
T Consensus 224 ~Gdlr~al~~Ldkli~~g-~g~It~e~V~~llg~-~~~~~if~L~~ai~~gd~~~Al~~l~~l-~~~G~~p~~il~~L~~ 300 (598)
T PRK09111 224 EGSVRDGLSLLDQAIAHG-AGEVTAEAVRDMLGL-ADRARVIDLFEALMRGDVAAALAEFRAQ-YDAGADPVVVLTDLAE 300 (598)
T ss_pred CCCHHHHHHHHHHHHhhc-CCCcCHHHHHHHhCC-CCHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCHHHHHHHHHH
Confidence 467788889997677787 456677777666543 3444555677666665544455555443 3445677777766555
Q ss_pred HhhH
Q 001601 838 DNIS 841 (1046)
Q Consensus 838 d~Kk 841 (1046)
..+.
T Consensus 301 ~~r~ 304 (598)
T PRK09111 301 FTHL 304 (598)
T ss_pred HHHH
Confidence 5443
No 174
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=32.66 E-value=1e+03 Score=30.76 Aligned_cols=10 Identities=10% Similarity=0.135 Sum_probs=6.6
Q ss_pred hHHHHHHHhh
Q 001601 831 IFKQYLDDNI 840 (1046)
Q Consensus 831 LLK~Yl~d~K 840 (1046)
|+..|.+.+|
T Consensus 674 ii~E~qE~~k 683 (811)
T KOG4364|consen 674 IIDEDQEASK 683 (811)
T ss_pred HHHHHHHHHH
Confidence 5666666666
No 175
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=32.06 E-value=1.1e+03 Score=29.54 Aligned_cols=105 Identities=23% Similarity=0.231 Sum_probs=63.3
Q ss_pred HHhhhh-hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 001601 276 RENELD-SKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVE 354 (1046)
Q Consensus 276 r~k~l~-~~~~e~~~~e~e~e~~~kel~~Ke~e~~~~~K~ie~r~kELe~KEkql~~~~~e~e~k~~e~e~k~kEL~s~e 354 (1046)
.+.++. -..++++-....+.+..++|..|-+++.-. ..|+-....+|-..++++.-+.-|.++....|....
T Consensus 195 keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q-------~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~ 267 (596)
T KOG4360|consen 195 KEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQ-------QEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYK 267 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 345555555555555555555555555332 233444555666667777777777778777777766
Q ss_pred HhHHHhHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHHHHH
Q 001601 355 KLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDL 394 (1046)
Q Consensus 355 K~~~~~~kEle~Kekel~~i~~~~~e~~kelE~KEKele~ 394 (1046)
-.=+.-..|++ ++ ++++.+++..+..-+.+|..
T Consensus 268 da~~ql~aE~~----El---eDkyAE~m~~~~EaeeELk~ 300 (596)
T KOG4360|consen 268 DAQRQLTAELE----EL---EDKYAECMQMLHEAEEELKC 300 (596)
T ss_pred hhHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHh
Confidence 55554444433 33 67778888888877777765
No 176
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=32.03 E-value=1.6e+03 Score=31.21 Aligned_cols=14 Identities=29% Similarity=0.271 Sum_probs=7.6
Q ss_pred HHHhHHHHHHHHHh
Q 001601 98 LACKEKQLELVRKR 111 (1046)
Q Consensus 98 le~Kek~l~~~r~~ 111 (1046)
+.+-.+-|..++..
T Consensus 1349 ~~~n~~~L~el~~~ 1362 (1758)
T KOG0994|consen 1349 LAENSRLLVELRAE 1362 (1758)
T ss_pred cccccHHHHHHHHH
Confidence 44445556666655
No 177
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.01 E-value=92 Score=41.14 Aligned_cols=31 Identities=26% Similarity=0.145 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHcCccccccc
Q 001601 629 IELESLLDIVAQHRQTSKLRQSLGFAEKAHG 659 (1046)
Q Consensus 629 dEL~~Lv~~va~~rQapeLcraLGl~eKipg 659 (1046)
.|.+.++..++..++..+||..||=-...-|
T Consensus 571 ke~la~i~t~~~~~~~~elc~~Lg~rl~~~g 601 (1049)
T KOG0307|consen 571 KETLAAICTYAQTDEFSELCDMLGDRLENAG 601 (1049)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHhhcc
Confidence 3444555566666788888888864443333
No 178
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=30.35 E-value=9.2e+02 Score=28.03 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=19.4
Q ss_pred HHhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhH
Q 001601 50 DISMKSLEKQSNDADSKIRLLDQRAKEIESKESDL 84 (1046)
Q Consensus 50 ~s~~~~~e~~~~~~~~k~~~le~r~k~~e~~e~~l 84 (1046)
..|...|..+-.++..+.-.|++..++.+.+=..+
T Consensus 11 ~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i 45 (344)
T PF12777_consen 11 KETEEQVEEMQEELEEKQPELEEKQKEAEELLEEI 45 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666655555443333
No 179
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=28.84 E-value=6.9e+02 Score=26.09 Aligned_cols=112 Identities=23% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHHHhhhhhhhhhHHHhhhhhhhhHHHHHHH
Q 001601 87 AERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLEN 166 (1046)
Q Consensus 87 ~e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~e~~~Ke~el~~~~~~~~k~~~d~~~~~~ 166 (1046)
...++.+...-+..-.+++..+...+.+...++..-+....... .++...+..+.. ++.
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~l~~--------------l~~ 137 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR-------ELLKSVEERLDS--------------LDE 137 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHH--------------HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 001601 167 LIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELES 219 (1046)
Q Consensus 167 ~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~ 219 (1046)
.+.....++.....+....+..++.....+..-+.....+...+.+...-++.
T Consensus 138 ~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 190 (191)
T PF04156_consen 138 SIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQELLEQ 190 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 180
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=28.73 E-value=5.5e+02 Score=27.38 Aligned_cols=65 Identities=22% Similarity=0.340 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 001601 173 EQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETK 237 (1046)
Q Consensus 173 ~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kk 237 (1046)
.+|-....++......+......+..-+.++..+...|..+..+|.-|.+.++...-++....-.
T Consensus 95 ~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~ 159 (194)
T PF08614_consen 95 QQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQ 159 (194)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444455555566666666666666666666665555443
No 181
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=28.62 E-value=6.5e+02 Score=25.71 Aligned_cols=88 Identities=13% Similarity=0.153 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhH--HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001601 342 EFEEKENELISVEKLIDKCSEELELKKKHLCVIENS--AAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEA 419 (1046)
Q Consensus 342 e~e~k~kEL~s~eK~~~~~~kEle~Kekel~~i~~~--~~e~~kelE~KEKele~~~k~~e~~~kele~Kekefeskek~ 419 (1046)
++..+.-.+..-...++..++|++.--.+++.+.+. +...+-.+=. ...-+.-...++.+.+-++.+.+.+++-++.
T Consensus 17 qLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llv-k~~k~~~~~eL~er~E~Le~ri~tLekQe~~ 95 (119)
T COG1382 17 QLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLV-KVSKEEAVDELEERKETLELRIKTLEKQEEK 95 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555566667777766666666554332 1111111111 1123333344445555555555555555555
Q ss_pred HHHHHHHHHHH
Q 001601 420 LDERWQDLEIK 430 (1046)
Q Consensus 420 leer~KelesK 430 (1046)
+.+|+++|.++
T Consensus 96 l~e~l~eLq~~ 106 (119)
T COG1382 96 LQERLEELQSE 106 (119)
T ss_pred HHHHHHHHHHH
Confidence 66666666553
No 182
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=28.62 E-value=81 Score=33.43 Aligned_cols=67 Identities=10% Similarity=0.224 Sum_probs=41.0
Q ss_pred HHHHHHhHhccccccChHHHHHHHHHhh-----cccchHHHHHHhCccc------------cchhhhHHhhhcccccCCC
Q 001601 766 VFLQLLGTFELVASFNRVEIVELLWTIS-----EHKQAPETCRALGFTD------------IVATIRFICAFKLTDIAKP 828 (1046)
Q Consensus 766 aFLqLLaafGL~seFd~dEL~kLv~~va-----~rkqapeLcrsLGL~~------------~idAvrfi~af~Lv~kFpP 828 (1046)
..|+.+..|++.++ .-.+.-+++... .+.-+-+.++.||..+ .++|+||+..++-++..||
T Consensus 46 ~~L~qllq~~Vi~D--Sk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~ 123 (167)
T PF07035_consen 46 SQLHQLLQYHVIPD--SKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPA 123 (167)
T ss_pred HHHHHHHhhcccCC--cHHHHHHHHHhHccChHHHHHHHHHHHHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCH
Confidence 44555566666553 223333333321 1222445555555443 8899999999999999999
Q ss_pred chhHHH
Q 001601 829 EAIFKQ 834 (1046)
Q Consensus 829 VpLLK~ 834 (1046)
.-+|.+
T Consensus 124 ~~fLeA 129 (167)
T PF07035_consen 124 RKFLEA 129 (167)
T ss_pred HHHHHH
Confidence 877776
No 183
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=28.04 E-value=9.7e+02 Score=27.54 Aligned_cols=68 Identities=16% Similarity=0.165 Sum_probs=41.7
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHHHHH
Q 001601 332 VQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMA 399 (1046)
Q Consensus 332 ~~~e~e~k~~e~e~k~kEL~s~eK~~~~~~kEle~Kekel~~i~~~~~e~~kelE~KEKele~~~k~~ 399 (1046)
+...|+.+..|++.-.|-|.+.+.===...+|.|..|.+|...-+.|=.....+.--+.+++.+-+.-
T Consensus 195 Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~~~~e 262 (267)
T PF10234_consen 195 LEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEYNRRE 262 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33445555556666666666665555556778888888885555555555566666666666655443
No 184
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=27.82 E-value=2.9e+02 Score=27.72 Aligned_cols=94 Identities=18% Similarity=0.253 Sum_probs=67.8
Q ss_pred hhhhhhHhhHHHHHHhHHHHHHhhhc--hhheecchhchHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhHHH
Q 001601 9 EELRLAESKKEILRRSYDLAHAQANS--VLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVL 86 (1046)
Q Consensus 9 ~~l~~~~~k~e~~~~~~~~~~~qas~--~l~~~l~w~~le~h~~s~~~~~e~~~~~~~~k~~~le~r~k~~e~~e~~l~l 86 (1046)
..+..|+-|...+.+-++.+..+-+. |-.|.---..+.+||.-. .....+-..|..+...+.+|..+ |
T Consensus 17 ~~~~gC~~K~~~Ie~qI~~Ak~~gN~~rv~GLe~AL~~v~~~Ctd~-~l~~e~q~ki~~~~~kV~ere~e---------L 86 (115)
T PF06476_consen 17 AALTGCEAKEQAIEKQIEYAKAHGNQHRVAGLEKALEEVKAHCTDE-GLKAERQQKIAEKQQKVAEREAE---------L 86 (115)
T ss_pred cccCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcCCc-hhhHHHHHHHHHHHHHHHHHHHH---------H
Confidence 34677889999999999888877664 666676778888888653 23366667777788888888876 5
Q ss_pred HHHHHhHhhHHHHHhHHHHHHHHHhh
Q 001601 87 AERRIKECNFELACKEKQLELVRKRI 112 (1046)
Q Consensus 87 ~e~~~ee~~~ele~Kek~l~~~r~~i 112 (1046)
.+..-.+-...+..+++.|...+..+
T Consensus 87 ~eA~~~G~~~KI~K~~~KL~ea~~eL 112 (115)
T PF06476_consen 87 KEAQAKGDSDKIAKRQKKLAEAKAEL 112 (115)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 55555566677777777777777433
No 185
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=26.88 E-value=7e+02 Score=29.20 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=11.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHH
Q 001601 273 VRLRENELDSKEEKLDAMKEEMKK 296 (1046)
Q Consensus 273 l~~r~k~l~~~~~e~~~~e~e~e~ 296 (1046)
+..|-..|.+.+.+++.++.+|++
T Consensus 303 v~~rT~~L~eVm~e~E~~KqemEe 326 (384)
T KOG0972|consen 303 VSSRTETLDEVMDEIEQLKQEMEE 326 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455544444443
No 186
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=26.76 E-value=6.1e+02 Score=27.76 Aligned_cols=72 Identities=18% Similarity=0.030 Sum_probs=46.8
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 338 GCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQ 412 (1046)
Q Consensus 338 ~k~~e~e~k~kEL~s~eK~~~~~~kEle~Kekel~~i~~~~~e~~kelE~KEKele~~~k~~e~~~kele~Keke 412 (1046)
.....++...+.|+..-......+.++...||.. ...+...+..++.+|+++-++.-+++.-...|+...++
T Consensus 136 ~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~---Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~ 207 (221)
T PF05700_consen 136 IHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRR---QEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQ 207 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666666666777777777777777 55566667778888887777666665555555544333
No 187
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=26.43 E-value=6.6e+02 Score=29.48 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 162 RRLENLIKDFCEQIELKEKDLRKIRS 187 (1046)
Q Consensus 162 ~~~~~~i~e~~~el~~ke~el~~~~~ 187 (1046)
+.++.++.++--++-.||.++++++-
T Consensus 322 et~eaKr~e~~~e~qrkEee~rqmFv 347 (406)
T KOG3859|consen 322 ETYEAKRNEFLGELQRKEEEMRQMFV 347 (406)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34788999999999999999999864
No 188
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=25.68 E-value=3.8e+02 Score=30.76 Aligned_cols=11 Identities=45% Similarity=0.413 Sum_probs=5.0
Q ss_pred HHHHHHHhhhh
Q 001601 888 QRIVQLEMAKA 898 (1046)
Q Consensus 888 kRI~qLEk~ka 898 (1046)
.||.|-+++-|
T Consensus 117 ~~i~qq~~~ea 127 (279)
T PF07271_consen 117 GRISQQEETEA 127 (279)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 189
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=25.42 E-value=2.5e+02 Score=31.24 Aligned_cols=41 Identities=22% Similarity=0.325 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHH
Q 001601 206 LQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELE 246 (1046)
Q Consensus 206 ~~~eiee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~kEl~ 246 (1046)
+..+.+.+.+|++.+.++++-.++++.--.|+.++...|..
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Eyd 196 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYD 196 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 33334444555555555555555555555555555555544
No 190
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=25.12 E-value=1.1e+03 Score=27.34 Aligned_cols=100 Identities=22% Similarity=0.319 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 001601 242 KKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQE 321 (1046)
Q Consensus 242 ~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~e~~~kel~~Ke~e~~~~~K~ie~r~kE 321 (1046)
+||-.-++=+++.+..-|+--+.++++...++-.=..++-+.....+.+++-...+.-||.+|+-++...+......-
T Consensus 31 kKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~K-- 108 (307)
T PF10481_consen 31 KKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCK-- 108 (307)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHH--
Confidence 444444444444455555555555555555555555566666777777888888888999999998888877765544
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 001601 322 LTLKEKQLKCVQESLEGCRNEFEEKEN 348 (1046)
Q Consensus 322 Le~KEkql~~~~~e~e~k~~e~e~k~k 348 (1046)
++++.+..++..|..+++.-..
T Consensus 109 -----kqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 109 -----KQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666665433
No 191
>PRK12705 hypothetical protein; Provisional
Probab=24.87 E-value=1.4e+03 Score=28.46 Aligned_cols=19 Identities=21% Similarity=0.125 Sum_probs=8.2
Q ss_pred HHHHhhhhhcCCCCChhHH
Q 001601 568 ILLLEQLSSVTPEINPQVR 586 (1046)
Q Consensus 568 ilLLE~L~~isp~is~~VK 586 (1046)
.+-|+.|....+-.+..+-
T Consensus 255 ~~~l~~Li~dgri~p~rIe 273 (508)
T PRK12705 255 RLTLEKLLADGRIHPARIE 273 (508)
T ss_pred HHHHHHHHhcCCCChHHHH
Confidence 3445555544443333333
No 192
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=24.84 E-value=1.2e+03 Score=27.44 Aligned_cols=205 Identities=16% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHhHhhHHHHHhHHHHHHHHHh-------hhhhHHHHhhhhhhhhhhHHHHHHHHHHhhhhhhhhhHHHhhhhhh----
Q 001601 89 RRIKECNFELACKEKQLELVRKR-------IGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKS---- 157 (1046)
Q Consensus 89 ~~~ee~~~ele~Kek~l~~~r~~-------i~ec~~El~~k~~eL~~~~~~veE~~~e~~~Ke~el~~~~~~~~k~---- 157 (1046)
.+|+..-.=|+.|+++|...-++ =.........-+.+|+...+.|....-++..|..-|......-+.+
T Consensus 62 ~Didavt~lLeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~ 141 (306)
T PF04849_consen 62 NDIDAVTRLLEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPES 141 (306)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhccccc
Q ss_pred -----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhhhhHHH
Q 001601 158 -----------------LVDQRRLENLIKDFCEQIELKEKDLRKIRS-----------SIEECEKELVMKEKHASSLQSL 209 (1046)
Q Consensus 158 -----------------~~d~~~~~~~i~e~~~el~~ke~el~~~~~-----------~Ie~~~kel~~ke~~l~~~~~e 209 (1046)
.+.+..+..+++.+..|-.....|...... .|.+|.++ |..-...
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~Q-------L~~An~q 214 (306)
T PF04849_consen 142 SESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQ-------LSEANQQ 214 (306)
T ss_pred CCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHH-------hhhcchh
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001601 210 IEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDA 289 (1046)
Q Consensus 210 iee~~~ElE~KeK~~e~~~k~ie~~~kkle~k~kEl~~~~~~i~e~~kele~kEkqle~~~~~l~~r~k~l~~~~~e~~~ 289 (1046)
|..+..||..|..++...+.+|.+--.++ -.++.+++.+...-.++......-..
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt~Llsqi-------------------------vdlQ~r~k~~~~EnEeL~q~L~~ske 269 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEITSLLSQI-------------------------VDLQQRCKQLAAENEELQQHLQASKE 269 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHhhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 290 MKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLK 325 (1046)
Q Consensus 290 ~e~e~e~~~kel~~Ke~e~~~~~K~ie~r~kELe~K 325 (1046)
.+..+..-+.+|.-|=.+..++--+-...++.+.++
T Consensus 270 ~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~~ 305 (306)
T PF04849_consen 270 SQRQLQAELQELQDKYAECMAMLHEAQEELKTLRKR 305 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
No 193
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=24.44 E-value=1.2e+03 Score=27.25 Aligned_cols=107 Identities=23% Similarity=0.262 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001601 258 ELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLE 337 (1046)
Q Consensus 258 ele~kEkqle~~~~~l~~r~k~l~~~~~e~~~~e~e~e~~~kel~~Ke~e~~~~~K~ie~r~kELe~KEkql~~~~~e~e 337 (1046)
.|+..|.|++...++-.-|-.+|++.+--+.+-...++.-..+...-.++.... +......++.-.-+.-++.
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l-------~e~c~~lek~rqKlshdlq 91 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSL-------MESCENLEKTRQKLSHDLQ 91 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhH-------HHHHHHHHHHHHHhhHHHh
Confidence 466667777777777777778888877777766655655554444444443211 1122233333444555566
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHhHHHHHHHHHHH
Q 001601 338 GCRNEFEEKENELISVEKLIDKCSEELELKKKHL 371 (1046)
Q Consensus 338 ~k~~e~e~k~kEL~s~eK~~~~~~kEle~Kekel 371 (1046)
.++.+|....-.|.+-.+.++..--|+..-+-+|
T Consensus 92 ~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsEL 125 (307)
T PF10481_consen 92 VKESQVNFLEGQLNSCKKQIEKLEQELKRCKSEL 125 (307)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666677777776666666665555555
No 194
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=24.15 E-value=1.4e+02 Score=37.53 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=22.5
Q ss_pred cchhhhh-hcccccccccccccccccccc
Q 001601 1008 MQFDHIA-SNHLRVRANMGAGQTSNVTGN 1035 (1046)
Q Consensus 1008 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 1035 (1046)
+-|+.++ ||.-|.-...++|-|+-|+.|
T Consensus 779 t~f~nv~~S~e~Gwl~GtLnGktglip~n 807 (812)
T KOG1451|consen 779 TIFTNVYESNEDGWLVGTLNGKTGLIPSN 807 (812)
T ss_pred ceeeeecccCCCCceeeecCCCcccCccc
Confidence 3466677 898888888889999988876
No 195
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=24.11 E-value=8.9e+02 Score=25.80 Aligned_cols=55 Identities=24% Similarity=0.294 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001601 164 LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELE 218 (1046)
Q Consensus 164 ~~~~i~e~~~el~~ke~el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE 218 (1046)
++..|..+..+|+.|.+-+.-++.++....=++-.-+..++.++.+=.+++.-..
T Consensus 128 L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 128 LEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555544444445555555555555554443
No 196
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=24.11 E-value=1e+03 Score=26.35 Aligned_cols=57 Identities=14% Similarity=0.236 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-H----HHHHHHHHhhhhhHHHHHHHHHHhhh
Q 001601 180 KDLRKIRSSIEECEKELVMKEKHASSLQSL-I----EDYAEELESKEKLYDEIKKSIIQCET 236 (1046)
Q Consensus 180 ~el~~~~~~Ie~~~kel~~ke~~l~~~~~e-i----ee~~~ElE~KeK~~e~~~k~ie~~~k 236 (1046)
.++......|+........++..+.+.-.+ . ..+..|.-..+..+.....+|+....
T Consensus 128 ~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~ 189 (247)
T PF06705_consen 128 RELNELQEAFENERNEREEREENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKR 189 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555544444443332222222 1 22234444455555555555554443
No 197
>KOG4786 consensus Ubinuclein, nuclear protein interacting with cellular and viral transcription factors [Transcription; Signal transduction mechanisms]
Probab=23.96 E-value=3.6e+02 Score=34.78 Aligned_cols=20 Identities=20% Similarity=0.064 Sum_probs=13.1
Q ss_pred chHHHHHHHHHHHhhhhhhc
Q 001601 882 LIENIKQRIVQLEMAKADCR 901 (1046)
Q Consensus 882 p~~~L~kRI~qLEk~ka~kk 901 (1046)
|...+..|-.-|+..+.+++
T Consensus 737 ~~~~~~E~~~~~~~~~~E~~ 756 (1136)
T KOG4786|consen 737 EKREEKERKEIMERKKREED 756 (1136)
T ss_pred hhhHHHHHHHHhhhhhhccc
Confidence 44556667777777776666
No 198
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=23.87 E-value=2.8e+02 Score=26.71 Aligned_cols=57 Identities=28% Similarity=0.404 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHhhhhhHHHHHH
Q 001601 173 EQIELKEKDLRKIRSSIEECEKELVMKE---KHASSLQSLIEDYAEELESKEKLYDEIKK 229 (1046)
Q Consensus 173 ~el~~ke~el~~~~~~Ie~~~kel~~ke---~~l~~~~~eiee~~~ElE~KeK~~e~~~k 229 (1046)
.||+..|+.+-+.+..++.....|.+.+ ...++++++...+-+-++.-|+++...++
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3455555555555555555555555432 34445555555555555555555555444
No 199
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.41 E-value=86 Score=34.56 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=9.8
Q ss_pred chHHHHHHHHHHHhh
Q 001601 882 LIENIKQRIVQLEMA 896 (1046)
Q Consensus 882 p~~~L~kRI~qLEk~ 896 (1046)
.++.|++||..|+.-
T Consensus 63 ~i~eLe~ri~~lq~~ 77 (233)
T COG3416 63 QIKELEKRIAILQAG 77 (233)
T ss_pred HHHHHHHHHHHHhcc
Confidence 456677777777663
No 200
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=23.28 E-value=1e+03 Score=26.66 Aligned_cols=48 Identities=23% Similarity=0.362 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhHHHHH
Q 001601 181 DLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIK 228 (1046)
Q Consensus 181 el~~~~~~Ie~~~kel~~ke~~l~~~~~eiee~~~ElE~KeK~~e~~~ 228 (1046)
+.+.+....+..+.++++++..|+..++..+++.+..+.+.+++|..-
T Consensus 152 ~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLl 199 (216)
T KOG1962|consen 152 ENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLL 199 (216)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 344444444444444444444444444444444444444444444333
No 201
>PRK10869 recombination and repair protein; Provisional
Probab=22.73 E-value=1.6e+03 Score=28.12 Aligned_cols=53 Identities=9% Similarity=0.057 Sum_probs=25.2
Q ss_pred HHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHHHhhhhhhhhhHH
Q 001601 90 RIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLV 150 (1046)
Q Consensus 90 ~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~e~~~Ke~el~~~ 150 (1046)
++++++.+...-.++++.++ ........++.+++-.++|.. ..+++.||-.++
T Consensus 158 ~~~~~y~~~~~~~~~l~~l~-------~~~~~~~~~~d~l~fql~Ei~-~~~l~~gE~eeL 210 (553)
T PRK10869 158 EMRAAYQLWHQSCRDLAQHQ-------QQSQERAARKQLLQYQLKELN-EFAPQPGEFEQI 210 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHH-hCCCCCCcHHHH
Confidence 55555555555555555555 333333334444444444333 344555555543
No 202
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=22.61 E-value=3.4e+02 Score=34.12 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 164 LENLIKDFCEQIELKEKDLRKIRSSIEECE 193 (1046)
Q Consensus 164 ~~~~i~e~~~el~~ke~el~~~~~~Ie~~~ 193 (1046)
+..+|.+|...+..+..||.+.+++|+.-.
T Consensus 112 ~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq 141 (907)
T KOG2264|consen 112 INTKIEELKRLIPQKQLELSALKGEIEQAQ 141 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHH
Confidence 445666666666666666666666655433
No 203
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=22.42 E-value=1.5e+03 Score=27.86 Aligned_cols=30 Identities=33% Similarity=0.385 Sum_probs=17.7
Q ss_pred hhhhhHHHHHHHHhHhhHHHHHhHHHHHHH
Q 001601 79 SKESDLVLAERRIKECNFELACKEKQLELV 108 (1046)
Q Consensus 79 ~~e~~l~l~e~~~ee~~~ele~Kek~l~~~ 108 (1046)
++..++..+..++.++..|+.....++..+
T Consensus 106 sl~~e~a~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 106 SLSSELAVLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666666666666666665
No 204
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=21.80 E-value=1.1e+03 Score=26.12 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 345 EKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHS 415 (1046)
Q Consensus 345 ~k~kEL~s~eK~~~~~~kEle~Kekel~~i~~~~~e~~kelE~KEKele~~~k~~e~~~kele~Kekefes 415 (1046)
....+.....+.+...+.+...|=..+ +.++.+-..+.++-+..-......+.++..+...+.+
T Consensus 171 ~~~~~~~~l~~~i~~~L~~~~~kL~Dl-------~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~ 234 (264)
T PF06008_consen 171 KPQQENESLAEAIRDDLNDYNAKLQDL-------RDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSE 234 (264)
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443333 3333344444444444444444444444444443333
No 205
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=21.76 E-value=1.8e+03 Score=28.52 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHHHHh
Q 001601 857 AMDFEVNALTFLIECF 872 (1046)
Q Consensus 857 a~~kEl~aLraVIKcI 872 (1046)
+.++.+++|..||--.
T Consensus 568 ~INkSLS~LgdVi~AL 583 (670)
T KOG0239|consen 568 NINKSLSALGDVISAL 583 (670)
T ss_pred HhchhhhhhHHHHHHH
Confidence 4566666666666433
No 206
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.51 E-value=1.7e+03 Score=28.06 Aligned_cols=85 Identities=16% Similarity=0.253 Sum_probs=44.1
Q ss_pred HHHHHHhHHHHHHhhh--hhhHHHHHHHHHHHHHhhhhhhHHHHHHHHhHhhHHHHHhHHHHHHHHHhhhhhHHHHhhhh
Q 001601 46 EEHLDISMKSLEKQSN--DADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKE 123 (1046)
Q Consensus 46 e~h~~s~~~~~e~~~~--~~~~k~~~le~r~k~~e~~e~~l~l~e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~ 123 (1046)
|.||.-+-..-+.+++ +..+++...-.-+.-+-.-+.++.+.. +..-+.--|++-+.+++ +|.+.++
T Consensus 53 e~~~N~~~ql~~lr~~~~~~~~~l~~vt~~~~ql~kEK~~~~m~n----~~~~e~~~k~~~~kdik-------~E~ea~~ 121 (613)
T KOG0992|consen 53 EGFYNESEQLCELRSQCNELTTKLSTVTQGLQQLQKEKTRVDMTN----EILLESVRKAQTQKDIK-------CEEEAKI 121 (613)
T ss_pred cccccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 4555555555555554 444555333332221111112222222 45555555666666666 7888888
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhHH
Q 001601 124 GELNLVKKSVEEWLEKLDLKMKEVGLV 150 (1046)
Q Consensus 124 ~eL~~~~~~veE~~~e~~~Ke~el~~~ 150 (1046)
++|..+ +++.+.+=+..+
T Consensus 122 k~l~q~---------~~d~l~~~~~fl 139 (613)
T KOG0992|consen 122 KNLQQI---------EIDKLKNLLSFL 139 (613)
T ss_pred HHHHHH---------hHHHHHHHHHHH
Confidence 888877 555555555553
No 207
>PLN02372 violaxanthin de-epoxidase
Probab=21.40 E-value=5.5e+02 Score=31.28 Aligned_cols=26 Identities=27% Similarity=0.132 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001601 257 LELHLEEEKLESLQRIVRLRENELDS 282 (1046)
Q Consensus 257 kele~kEkqle~~~~~l~~r~k~l~~ 282 (1046)
++..+-+++++..++.|+..+..+..
T Consensus 379 ~e~~~~~~e~~~~v~~~~~~~~~~~~ 404 (455)
T PLN02372 379 KEARQIEEELEKEVEKLGKEEESLFK 404 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666665555544
No 208
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=21.38 E-value=2.7e+02 Score=33.16 Aligned_cols=102 Identities=17% Similarity=0.141 Sum_probs=52.6
Q ss_pred cccccccchHHHHHHHHHHHhhhhhhcccCCCCC--ChhhHHhhhhcCCcCCCCC----CCCCCCCCCCCCCCCccCCcc
Q 001601 875 NKLESSLLIENIKQRIVQLEMAKADCRRHSTPAP--SATIQLQLASRNNYNIGTS----TPTNQPVPSHTNQPQHSGINH 948 (1046)
Q Consensus 875 ~KLEse~p~~~L~kRI~qLEk~ka~kkr~~~~~~--~q~~~~~~~~~~~~~~~~~----~p~~~~~~~~~~~~~~~~~~~ 948 (1046)
-+||-++-.+.+.+|+.|-+.++..-- .+.+ ++.-++-+.+...++.+.+ .|+..|-.++-..+++.+
T Consensus 128 k~le~~~~~E~e~kr~aq~k~Q~l~~~---~f~~~~~~~~~q~~~s~~m~s~~~~gl~e~~~~~~~~p~~~~~~~~~--- 201 (424)
T KOG2880|consen 128 KKLEVQREEETERKRSAQTKQQQLESS---QFSPLEPPSFKQLLDSGPMPSNQSNGLPEQPIGEPLVPSNESRSLNY--- 201 (424)
T ss_pred HHhhcchhhHHHHHHHHHHhhhcCCcc---cCCccCchHHHhhhcccCCCcCCCCCCcCCCcCCCCcccccccccCC---
Confidence 367778889999999998877766433 2222 2222222333333332222 222222222222223322
Q ss_pred cCCccCCcC-chhhhhcCCCCCCCcccCCCCcccc
Q 001601 949 SIGFSASRE-QPQLQNNYKRPRIEPLTTRAYMPQI 982 (1046)
Q Consensus 949 ~~~~~~~~~-q~~~~~~~kr~~~~~~~~~~~~~~~ 982 (1046)
+...+.+-. ||+.-..--++-=.|.++|...|-+
T Consensus 202 s~~l~~~~s~ep~~s~~~n~~~k~p~~~r~l~p~a 236 (424)
T KOG2880|consen 202 SELLSVLSSPEPSDSCTTNVTIKSPSVDRVLKPGA 236 (424)
T ss_pred chhhhhccCCCccccccccccccCCCCCccccccc
Confidence 222233333 6666666666666789999988863
No 209
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=21.11 E-value=1.7e+03 Score=27.87 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=17.6
Q ss_pred HHHHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHHHhh
Q 001601 105 LELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLD 141 (1046)
Q Consensus 105 l~~~r~~i~ec~~El~~k~~eL~~~~~~veE~~~e~~ 141 (1046)
+..++..-++|.+.+-..+-.+|..-..+++.-..++
T Consensus 138 i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie 174 (560)
T PF06160_consen 138 IEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIE 174 (560)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHH
Confidence 3333333444445555555555555555554444333
No 210
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.20 E-value=2.1e+03 Score=28.76 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=20.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001601 235 ETKLDCKKKELELTQTSIIELSLELHLEEEKLES 268 (1046)
Q Consensus 235 ~kkle~k~kEl~~~~~~i~e~~kele~kEkqle~ 268 (1046)
....+.+.+|++.-.-+.+.+..+.+.-.++++.
T Consensus 729 ~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k 762 (970)
T KOG0946|consen 729 AEASKTQNEELNAALSENKKLENDQELLTKELNK 762 (970)
T ss_pred HHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345667777777766666666555555555543
No 211
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=20.08 E-value=2e+03 Score=28.59 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=42.5
Q ss_pred chhHHHHHHHHHhHhccccccCh-HHHHHHHHHhhcccchHHHHHHhCccccchhhhHHhhhcccccCCCchhHHHHHHH
Q 001601 760 NSLEVLVFLQLLGTFELVASFNR-VEIVELLWTISEHKQAPETCRALGFTDIVATIRFICAFKLTDIAKPEAIFKQYLDD 838 (1046)
Q Consensus 760 ~slEalaFLqLLaafGL~seFd~-dEL~kLv~~va~rkqapeLcrsLGL~~~idAvrfi~af~Lv~kFpPVpLLK~Yl~d 838 (1046)
+++=-.-|..+||..||--++++ +++.+++-+.- --+-|+.|| .+.++.+-=-|-.|+|+|+.|
T Consensus 280 D~~~kKQ~~ymLaR~~i~~e~~~~e~l~di~sN~~----Lse~f~~La-----------rELeimepk~pedIyK~hl~~ 344 (878)
T KOG2005|consen 280 DPLLKKQMAYMLARHGIYFELSEDEELQDILSNGK----LSEHFLYLA-----------RELEIMEPKVPEDIYKSHLED 344 (878)
T ss_pred CHHHHHHHHHHHHhcCCceecCcCHHHHHHHcccc----HHHHHHHHH-----------HHhcccCCCChHHHHHHHHhc
Confidence 34445668888999999888874 55555543322 222332222 345666666677899999999
Q ss_pred hh
Q 001601 839 NI 840 (1046)
Q Consensus 839 ~K 840 (1046)
.|
T Consensus 345 ~r 346 (878)
T KOG2005|consen 345 SR 346 (878)
T ss_pred cc
Confidence 88
Done!