Query 001601
Match_columns 1046
No_of_seqs 172 out of 174
Neff 4.4
Searched_HMMs 29240
Date Tue Mar 26 15:51:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001601.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_901-904//hhsearch_pdb/001601hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 1.0 1 1 62.6 12.5 20 26-45 110-129 (1184)
2 1i84_S Smooth muscle myosin he 1.0 1 1 61.6 11.5 13 522-534 605-617 (1184)
3 1c1g_A Tropomyosin; contractIl 1.0 1 1 32.0 40.5 283 84-380 1-283 (284)
4 3vkg_A Dynein heavy chain, cyt 1.0 1 1 30.6 28.9 65 177-241 2011-2075(3245)
5 3na7_A HP0958; flagellar bioge 1.0 1 1 29.4 20.8 35 375-409 110-144 (256)
6 3na7_A HP0958; flagellar bioge 1.0 1 1 26.6 19.7 32 417-448 131-162 (256)
7 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 20.9 17.0 27 19-45 87-116 (1080)
8 2qag_C Septin-7; cell cycle, c 1.0 1 1 14.1 0.0 62 389-450 339-401 (418)
9 2efr_A General control protein 1.0 1 1 14.0 18.7 124 339-469 1-124 (155)
10 2rlw_A PLNF; toxin; NMR {Lacto 1.0 1 1 13.4 1.0 32 678-709 3-34 (34)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=62.61 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=11.7
Q ss_pred HHHHHHHHCHHHEECCHHCH
Q ss_conf 99997000122200131205
Q 001601 26 DLAHAQANSVLNFTVQWKDL 45 (1046)
Q Consensus 26 ~~~~~qas~~l~~~lqw~~l 45 (1046)
+.|..-+.+||+-.=-|+.|
T Consensus 110 ~~iyT~~g~~li~vNP~~~l 129 (1184)
T 1i84_S 110 GLIYTYSGLFCVVINPYKQL 129 (1184)
T ss_dssp TCCEEEETTEEEEECCCSCC
T ss_pred CCCEEECCCCEEEECCCCCC
T ss_conf 98477037501551798677
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=61.58 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=4.4
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 5358886321389
Q 001601 522 FGEISHTLTKACD 534 (1046)
Q Consensus 522 r~Ei~~ALr~a~D 534 (1046)
..++...|+.|.+
T Consensus 605 ~~~~~~ll~~s~~ 617 (1184)
T 1i84_S 605 NDNVTSLLNQSSD 617 (1184)
T ss_dssp CHHHHHHHHTCSC
T ss_pred CHHHHHHHHHCCH
T ss_conf 1999999995853
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=1.00 E-value=1 Score=31.97 Aligned_cols=283 Identities=13% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999978674489889699899999766566788765332235558899999998663222466777311234567888
Q 001601 84 LVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRR 163 (1046)
Q Consensus 84 ~~~~e~~~ee~~~ele~Kek~l~~~r~~i~ec~~El~~k~~eL~~~~~~ieE~~~e~~~Ke~eL~~~~~~~~k~~~d~~~ 163 (1046)
|.-+..++..+..+++.-...+..+...+.++..++..-+.++......+......+..-..++..
T Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 66 (284)
T 1c1g_A 1 MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKD-------------- 66 (284)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_conf 937899999988768889999999999999999889888999999999999999999999999999--------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99989999999997799999998779999999988898665568879999999986454289999999986523235588
Q 001601 164 LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKK 243 (1046)
Q Consensus 164 ~~~~i~e~~~el~~ke~el~~~~~~ie~~~kel~~ke~~l~~~~~ei~e~~~ElE~KeK~~e~~~~~ie~~~kk~e~k~k 243 (1046)
....+..+..++...+.++......+.....++..-...+......+......+..-...+......+......+.....
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (284)
T 1c1g_A 67 AQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEI 146 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998987798899999999988988998898899999999999988888999999888777510667999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89987988999888887889989999999998773210179999999999998744456778887789999999878988
Q 001601 244 ELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELT 323 (1046)
Q Consensus 244 El~~~~~~i~e~~kele~kEk~le~~~~ei~~r~k~l~~~~~e~~~~e~e~e~~~kel~~Kekel~~~~K~iE~R~kELe 323 (1046)
.+......+.....++......+......+..-..++......+..+...+......+......+......+..-...+.
T Consensus 147 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 226 (284)
T 1c1g_A 147 QLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIK 226 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998888998899999889988888998999898788799999999999999999999758778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999998999975433355789999778988885889689999877788889968899
Q 001601 324 LKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAE 380 (1046)
Q Consensus 324 ~KEkql~~~~~~~e~k~~e~e~k~kEL~s~eK~~~~~~kELesKekel~~v~~~~~e 380 (1046)
.-...+......+......+......+...+..+...-..+..-+.+++.+...+..
T Consensus 227 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 283 (284)
T 1c1g_A 227 VLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999888989988999998899999999999999999998899999999999997436
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=30.62 Aligned_cols=65 Identities=15% Similarity=0.197 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77999999987799999999888986655688799999999864542899999999865232355
Q 001601 177 LKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCK 241 (1046)
Q Consensus 177 ~ke~el~~~~~~ie~~~kel~~ke~~l~~~~~ei~e~~~ElE~KeK~~e~~~~~ie~~~kk~e~k 241 (1046)
-|..++.+.......-..+|..++..+..++..+..+-.+++....+-+.-..+++.|..++++-
T Consensus 2011 Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA 2075 (3245)
T 3vkg_A 2011 PLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRS 2075 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 29999999999999999999999999999999999999999999999999999999999999999
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=29.43 Aligned_cols=35 Identities=11% Similarity=0.084 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96889976543466888889999998978888899
Q 001601 375 ENSAAELSDECESNELELDLIQTMAIGYLKQLKEK 409 (1046)
Q Consensus 375 ~~~~~e~~kelE~KEKele~~~k~~e~~~kele~K 409 (1046)
++.+.+.+...+.....++.....+.....++...
T Consensus 110 E~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~ 144 (256)
T 3na7_A 110 NREIENLQNEIKRKSEKQEDLKKEMLELEKLALEL 144 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=26.56 Aligned_cols=32 Identities=22% Similarity=0.070 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998999987999899999999989999
Q 001601 417 KEALDERWQDLEIKERKFEERVKEFELREKEI 448 (1046)
Q Consensus 417 ek~leer~KelesKek~fe~rvKE~elKEkq~ 448 (1046)
+..+.....++......+...+.+++.....+
T Consensus 131 ~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l 162 (256)
T 3na7_A 131 KKEMLELEKLALELESLVENEVKNIKETQQII 162 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=20.87 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=18.3
Q ss_pred HHHHHHH---HHHHHHHHCHHHEECCHHCH
Q ss_conf 9999869---99997000122200131205
Q 001601 19 EILRRSY---DLAHAQANSVLNFTVQWKDL 45 (1046)
Q Consensus 19 ~~~~~~~---~~~~~qas~~l~~~lqw~~l 45 (1046)
.+|+.-| |.|..-+.+||+--=-|+.|
T Consensus 87 ~nL~~Ry~~~~~iYTy~G~iLiavNPyk~l 116 (1080)
T 2dfs_A 87 HNLKVRFIDSKLIYTYCGIVLVAINPYEQL 116 (1080)
T ss_dssp HHHHHHHHTTCCCEEEETTEEEEECCSSCC
T ss_pred HHHHHHHHHCCCCHHCCCCEEEEECCCCCC
T ss_conf 999999985577310257426883697544
No 8
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=14.10 Aligned_cols=62 Identities=21% Similarity=0.396 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8888899999989788888999-9988869999999899998799989999999998999999
Q 001601 389 ELELDLIQTMAIGYLKQLKEKE-KQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIES 450 (1046)
Q Consensus 389 EKele~~~k~~e~~~kele~Ke-kefeskek~leer~KelesKek~fe~rvKE~elKEkq~es 450 (1046)
.+.|..++++-+.++++.+... .+++.+.+.++++.++|+-+.++++.....|+....++++
T Consensus 339 ~~~f~~~v~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 401 (418)
T 2qag_C 339 EQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQ 401 (418)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999998999899999999999999999999999999999987665422
No 9
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=1.00 E-value=1 Score=14.04 Aligned_cols=124 Identities=21% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35578999977898888588968999987778888996889976543466888889999998978888899999888699
Q 001601 339 CRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKE 418 (1046)
Q Consensus 339 k~~e~e~k~kEL~s~eK~~~~~~kELesKekel~~v~~~~~e~~kelE~KEKele~~~k~~e~~~kele~Kekefeskek 418 (1046)
+..+++.+.|+. -..-+....|.-. ++.-.....+.....+++-.+|+...+.+...+|-|+..+.....++.
T Consensus 1 r~~~lE~qlkea---ae~ad~KyeEvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd 73 (155)
T 2efr_A 1 RMKQLEDKVEEL---LSKNYHLENEVAR----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKED 73 (155)
T ss_dssp CHHHHHHHHHHH---HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 977789999999---9985877899998----987887899999999998999999999887721030334567899899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999998999987999899999999989999999998987555656677631
Q 001601 419 ALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKL 469 (1046)
Q Consensus 419 ~leer~KelesKek~fe~rvKE~elKEkq~es~~~~~e~~~ke~E~kE~~l 469 (1046)
.++++.+.|.-+=+..+.|...-+-+...++..-..++..+.....+-..+
T Consensus 74 ~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i 124 (155)
T 2efr_A 74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAI 124 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999899999789999989999999999999989999
No 10
>2rlw_A PLNF; toxin; NMR {Lactobacillus plantarum}
Probab=1.00 E-value=1 Score=13.44 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCC
Q ss_conf 66770479986310999245599987522016
Q 001601 678 HDLGHNEVLQLLHLAPDPAMFVLDFIQHWKSQ 709 (1046)
Q Consensus 678 h~~~~~Ei~~AL~~a~DPAkLVLDaieg~~~~ 709 (1046)
|-.+--.|.+..+.++.||-.|..|+.||..|
T Consensus 3 haysargvrnnyksavgpadwvisavrgfihg 34 (34)
T 2rlw_A 3 HAYSARGVRNNYKSAVGPADWVISAVRGFIHG 34 (34)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHCCCHHHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 20200002202422458077899997753169
Done!