Query 001602
Match_columns 1046
No_of_seqs 155 out of 211
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:52:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001602.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001602hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3691 Exocyst complex subuni 100.0 1E-122 2E-127 1072.6 66.3 888 33-1045 30-972 (982)
2 PF04048 Sec8_exocyst: Sec8 ex 100.0 1.4E-32 3E-37 274.0 16.6 137 15-151 1-142 (142)
3 PF10475 DUF2450: Protein of u 99.2 8.1E-10 1.8E-14 123.9 21.4 186 20-207 1-191 (291)
4 PF10474 DUF2451: Protein of u 98.4 1.2E-05 2.7E-10 87.1 18.3 142 884-1029 74-220 (234)
5 KOG2115 Vacuolar sorting prote 98.0 0.00034 7.4E-09 85.5 19.7 217 52-358 246-462 (951)
6 PF15469 Sec5: Exocyst complex 97.6 0.0017 3.8E-08 67.9 16.1 141 63-204 2-148 (182)
7 PF06248 Zw10: Centromere/kine 97.6 0.0024 5.3E-08 79.1 19.4 171 42-212 7-182 (593)
8 PF04100 Vps53_N: Vps53-like, 97.5 0.0048 1E-07 72.1 19.3 179 30-209 2-185 (383)
9 PF04124 Dor1: Dor1-like famil 97.4 0.011 2.4E-07 68.0 19.7 157 49-207 14-170 (338)
10 PF04437 RINT1_TIP1: RINT-1 / 97.3 0.023 5.1E-07 68.9 22.5 338 597-1002 97-451 (494)
11 KOG2176 Exocyst complex, subun 96.7 0.092 2E-06 64.5 19.3 173 35-208 34-206 (800)
12 PF10392 COG5: Golgi transport 96.1 0.18 3.8E-06 50.1 14.6 86 26-111 2-95 (132)
13 KOG2180 Late Golgi protein sor 96.1 0.34 7.3E-06 58.9 19.1 188 18-205 5-197 (793)
14 KOG2069 Golgi transport comple 95.6 0.35 7.5E-06 57.8 16.7 172 37-210 24-197 (581)
15 PF06148 COG2: COG (conserved 95.3 0.016 3.4E-07 57.6 3.8 126 26-151 7-132 (133)
16 PF04091 Sec15: Exocyst comple 93.5 0.54 1.2E-05 53.6 11.4 141 885-1026 162-307 (311)
17 PF08700 Vps51: Vps51/Vps67; 87.4 5.9 0.00013 36.0 10.1 76 28-103 2-80 (87)
18 KOG2307 Low density lipoprotei 85.1 15 0.00033 44.1 14.0 116 24-140 25-148 (705)
19 KOG2346 Uncharacterized conser 84.8 7.1 0.00015 46.1 11.0 179 28-212 29-210 (636)
20 PF09763 Sec3_C: Exocyst compl 80.5 33 0.00072 43.7 16.1 150 59-208 8-179 (701)
21 KOG0412 Golgi transport comple 80.0 60 0.0013 40.4 16.7 158 46-206 35-202 (773)
22 PF10191 COG7: Golgi complex c 79.8 1.9E+02 0.0041 37.5 22.4 182 26-209 4-196 (766)
23 PF02601 Exonuc_VII_L: Exonucl 70.3 1.1E+02 0.0024 34.9 15.5 78 49-126 147-230 (319)
24 PRK11637 AmiB activator; Provi 64.6 1.9E+02 0.0041 34.6 16.4 146 47-198 45-191 (428)
25 KOG2273 Membrane coat complex 60.2 1.9E+02 0.0041 35.3 15.7 162 49-214 281-446 (503)
26 PF07899 Frigida: Frigida-like 58.7 26 0.00056 39.6 7.2 81 113-199 146-226 (290)
27 KOG2211 Predicted Golgi transp 57.2 4.3E+02 0.0093 33.2 17.0 140 42-189 68-217 (797)
28 PLN03094 Substrate binding sub 56.9 1.4E+02 0.003 35.1 12.8 142 11-171 227-369 (370)
29 TIGR03185 DNA_S_dndD DNA sulfu 56.2 1.2E+02 0.0027 38.3 13.5 31 182-212 492-522 (650)
30 PF04129 Vps52: Vps52 / Sac2 f 55.7 2.9E+02 0.0064 33.9 16.1 72 138-209 79-154 (508)
31 KOG0994 Extracellular matrix g 54.7 6.7E+02 0.015 33.6 20.1 59 70-128 1573-1631(1758)
32 PF07553 Lipoprotein_Ltp: Host 54.3 39 0.00085 27.6 5.5 39 985-1023 6-45 (48)
33 PF06160 EzrA: Septation ring 52.0 2.8E+02 0.006 34.5 15.3 90 72-171 113-203 (560)
34 COG4477 EzrA Negative regulato 51.8 5.2E+02 0.011 31.6 16.4 144 7-172 43-207 (570)
35 PF05266 DUF724: Protein of un 51.4 85 0.0018 33.3 9.2 24 1-24 18-41 (190)
36 PF06046 Sec6: Exocyst complex 49.3 99 0.0021 38.3 10.9 119 850-975 352-476 (566)
37 KOG2033 Low density lipoprotei 49.0 1.2E+02 0.0027 37.7 10.8 103 63-168 38-140 (863)
38 PF08317 Spc7: Spc7 kinetochor 48.8 1.4E+02 0.003 34.4 11.3 160 24-184 136-301 (325)
39 PF07393 Sec10: Exocyst comple 47.8 6.5E+02 0.014 32.2 18.2 135 887-1025 559-698 (710)
40 KOG1961 Vacuolar sorting prote 46.6 6.7E+02 0.014 31.2 17.6 121 89-209 83-216 (683)
41 TIGR00996 Mtu_fam_mce virulenc 45.7 4.7E+02 0.01 29.2 14.9 104 15-122 131-236 (291)
42 cd07613 BAR_Endophilin_A1 The 45.0 4.5E+02 0.0097 28.7 15.7 121 49-171 88-216 (223)
43 PF09325 Vps5: Vps5 C terminal 44.1 4.4E+02 0.0094 28.3 15.4 45 51-96 33-77 (236)
44 PF09325 Vps5: Vps5 C terminal 42.8 3.5E+02 0.0076 29.0 12.8 94 48-141 81-175 (236)
45 cd07614 BAR_Endophilin_A2 The 42.4 4.9E+02 0.011 28.4 19.5 154 14-169 44-214 (223)
46 KOG2460 Signal recognition par 41.7 4.1E+02 0.0089 32.4 13.4 120 48-173 300-454 (593)
47 PRK04778 septation ring format 41.7 7E+02 0.015 31.1 16.6 107 74-183 369-475 (569)
48 PF12854 PPR_1: PPR repeat 41.5 43 0.00093 24.8 3.7 25 315-340 7-31 (34)
49 cd07623 BAR_SNX1_2 The Bin/Amp 41.2 5E+02 0.011 28.1 16.6 137 49-191 19-160 (224)
50 PF04108 APG17: Autophagy prot 41.1 5.7E+02 0.012 30.5 15.1 147 48-210 209-361 (412)
51 PRK04778 septation ring format 40.2 3E+02 0.0064 34.3 13.0 140 18-171 64-207 (569)
52 COG5491 VPS24 Conserved protei 40.1 5.1E+02 0.011 27.9 12.8 79 74-152 24-105 (204)
53 KOG3501 Molecular chaperone Pr 39.0 2.7E+02 0.0058 26.5 9.1 78 82-159 4-94 (114)
54 PF06160 EzrA: Septation ring 38.9 7.3E+02 0.016 30.9 16.1 117 52-174 347-463 (560)
55 KOG2286 Exocyst complex subuni 38.7 8.2E+02 0.018 31.1 16.1 174 853-1044 467-647 (667)
56 PTZ00464 SNF-7-like protein; P 37.8 4.1E+02 0.0088 28.7 11.9 71 131-208 77-147 (211)
57 PF10186 Atg14: UV radiation r 37.6 5.4E+02 0.012 28.6 13.7 82 49-133 27-108 (302)
58 PRK10869 recombination and rep 37.5 9E+02 0.019 30.1 18.3 25 183-207 358-382 (553)
59 KOG0963 Transcription factor/C 37.2 6.8E+02 0.015 31.2 14.6 122 69-204 230-353 (629)
60 COG3352 FlaC Putative archaeal 36.1 4.9E+02 0.011 26.6 11.2 96 9-113 42-140 (157)
61 cd07616 BAR_Endophilin_B1 The 36.0 6.2E+02 0.013 27.7 13.4 140 62-206 71-227 (229)
62 COG4915 XpaC 5-bromo-4-chloroi 33.7 5.6E+02 0.012 27.0 11.3 96 93-196 66-176 (204)
63 PF15619 Lebercilin: Ciliary p 33.3 6.2E+02 0.013 27.0 12.3 101 46-146 9-119 (194)
64 cd07592 BAR_Endophilin_A The B 33.1 4.4E+02 0.0095 28.7 11.3 139 62-208 66-220 (223)
65 PRK14140 heat shock protein Gr 31.6 2.2E+02 0.0047 30.3 8.4 17 128-144 90-106 (191)
66 KOG0612 Rho-associated, coiled 30.4 9.3E+02 0.02 32.6 14.9 122 84-207 528-650 (1317)
67 KOG0796 Spliceosome subunit [R 29.6 3.1E+02 0.0068 31.3 9.6 96 52-168 63-158 (319)
68 COG4064 MtrG Tetrahydromethano 29.4 1.2E+02 0.0027 26.5 4.9 35 48-82 14-48 (75)
69 cd07610 FCH_F-BAR The Extended 28.9 6.6E+02 0.014 25.9 14.8 33 152-184 123-155 (191)
70 cd07600 BAR_Gvp36 The Bin/Amph 28.6 6E+02 0.013 28.1 11.5 129 59-193 77-225 (242)
71 PF05615 THOC7: Tho complex su 28.5 5.9E+02 0.013 25.2 12.8 71 45-115 42-115 (139)
72 PRK00286 xseA exodeoxyribonucl 28.4 5.9E+02 0.013 30.5 12.6 61 47-107 262-324 (438)
73 KOG2911 Uncharacterized conser 27.9 4.3E+02 0.0094 31.4 10.6 109 38-154 235-362 (439)
74 PRK10884 SH3 domain-containing 27.1 7.3E+02 0.016 26.7 11.6 24 48-71 92-115 (206)
75 smart00787 Spc7 Spc7 kinetocho 26.5 8.3E+02 0.018 28.0 12.7 29 163-191 254-282 (312)
76 KOG2148 Exocyst protein Sec3 [ 25.0 6.3E+02 0.014 31.7 11.5 147 59-206 196-360 (867)
77 KOG2347 Sec5 subunit of exocys 24.9 6.2E+02 0.013 32.8 11.7 86 104-195 247-336 (934)
78 PHA02562 46 endonuclease subun 24.2 5.2E+02 0.011 31.8 11.5 21 180-200 302-322 (562)
79 KOG3745 Exocyst subunit - Sec1 24.0 1.2E+03 0.026 29.9 14.0 187 5-207 19-219 (763)
80 KOG4637 Adaptor for phosphoino 23.6 6.3E+02 0.014 29.5 10.5 35 49-84 153-187 (464)
81 COG1463 Ttg2C ABC-type transpo 23.0 9.4E+02 0.02 28.0 12.6 62 63-124 165-226 (359)
82 PF11887 DUF3407: Protein of u 23.0 8.9E+02 0.019 27.0 11.9 112 44-174 26-138 (267)
83 PRK14139 heat shock protein Gr 22.9 4E+02 0.0087 28.2 8.5 50 128-182 85-135 (185)
84 PRK15374 pathogenicity island 22.9 1.5E+03 0.032 28.0 15.1 46 58-104 126-171 (593)
85 PF07851 TMPIT: TMPIT-like pro 22.9 7.1E+02 0.015 28.9 11.1 27 84-110 35-61 (330)
86 PF09693 Phage_XkdX: Phage unc 22.7 1.3E+02 0.0028 23.5 3.6 36 986-1023 1-36 (40)
87 COG4717 Uncharacterized conser 22.6 1.8E+03 0.04 28.9 15.3 92 45-145 177-269 (984)
88 KOG2216 Conserved coiled/coile 22.4 8.7E+02 0.019 27.4 11.0 139 54-200 16-174 (303)
89 PRK14156 heat shock protein Gr 22.3 5E+02 0.011 27.3 9.0 86 90-181 36-128 (177)
90 cd07617 BAR_Endophilin_B2 The 22.0 1E+03 0.023 25.9 16.8 105 59-165 103-214 (220)
91 TIGR02606 antidote_CC2985 puta 21.7 74 0.0016 27.9 2.4 29 147-175 13-41 (69)
92 PF10136 SpecificRecomb: Site- 21.5 8.6E+02 0.019 30.8 12.3 101 7-107 93-236 (643)
93 PF04740 LXG: LXG domain of WX 21.5 5.9E+02 0.013 26.8 9.8 66 70-138 116-182 (204)
94 PF04108 APG17: Autophagy prot 21.4 1.4E+03 0.031 27.2 15.7 22 185-206 365-386 (412)
95 KOG2307 Low density lipoprotei 21.4 1.1E+03 0.023 29.2 12.3 124 49-183 43-167 (705)
96 PF08463 EcoEI_R_C: EcoEI R pr 21.4 3.3E+02 0.0071 27.7 7.5 40 168-209 125-164 (164)
97 PF07139 DUF1387: Protein of u 21.3 1.1E+03 0.024 26.9 11.9 26 139-164 243-268 (302)
98 TIGR01669 phage_XkdX phage unc 21.2 1.7E+02 0.0037 23.6 4.1 37 985-1023 5-41 (45)
99 TIGR00237 xseA exodeoxyribonuc 21.2 1.2E+03 0.026 28.0 13.2 60 48-107 258-319 (432)
100 PHA02503 putative transcriptio 21.1 69 0.0015 26.0 1.8 20 625-644 25-44 (57)
101 PF13870 DUF4201: Domain of un 20.7 9.5E+02 0.021 24.8 14.5 91 69-159 58-155 (177)
102 COG4472 Uncharacterized protei 20.3 3.6E+02 0.0078 24.5 6.2 38 11-48 15-52 (88)
103 PRK03918 chromosome segregatio 20.0 1.9E+03 0.041 28.6 16.0 9 196-204 748-756 (880)
No 1
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.8e-123 Score=1072.58 Aligned_cols=888 Identities=22% Similarity=0.299 Sum_probs=660.4
Q ss_pred CcHHHHHHhh----ccCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001602 33 DSLPHVVHIL----TSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAK 108 (1046)
Q Consensus 33 ~~~~~~l~~L----~s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k 108 (1046)
.-+-.+++-| +-+.|+.++++|++.|++.+.+|+++|+.|+|+|+++|.+|++|++.|+.||++|.++|++|.+||
T Consensus 30 G~lInvi~nL~~Se~~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rerI~~vK~~L~~~k 109 (982)
T KOG3691|consen 30 GLLINVIRNLVGSEDTEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRERIHNVKNNLEACK 109 (982)
T ss_pred chhhhHHHhhccCCcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666 344568899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCchHHHHHHHHhhHHHHHHHHHHHHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCccchHHHHHH
Q 001602 109 RRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSE 188 (1046)
Q Consensus 109 ~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~l~~~~L~~i~aL~~lr~~ 188 (1046)
.+|+|+|++|++||.++.+|++||++|++||++++||+|||++|++|+|++|+++|.+|+.++|++ |.+|++|+|||++
T Consensus 110 ~ll~~~rdeLqklw~~~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~lng~-L~~VEgLs~l~~e 188 (982)
T KOG3691|consen 110 ELLNTRRDELQKLWAENSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWELLNGP-LDGVEGLSDLRSE 188 (982)
T ss_pred HHHhcCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-chhhhhhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCc-chhhhcccccCCCCccccccccccCCCCCccccccccCCCCCCccCCCCCCCC
Q 001602 189 LTKLRGVLFYKVLEDLHAHLYNRGEY-SSAVLSMHEMDDEVPTTVAVAYTTNNSQPLSRRTRLKGDNQFGVHGLADGSHS 267 (1046)
Q Consensus 189 L~~q~~~L~d~lieEL~~hLYlKs~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (1046)
|+.+++.|+++|+||||+|+|+|+.. -..+ ..+ .+.++.. ++ ++
T Consensus 189 le~~~~~L~~~L~eELv~ily~ks~~~~l~~--~~~-~~~~~s~------------------l~-----------~~--- 233 (982)
T KOG3691|consen 189 LEGLLSHLEDILIEELVSILYLKSVAYPLVS--YCR-TNPLSSR------------------LN-----------DF--- 233 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhhHHh--hhc-CCchhhH------------------HH-----------HH---
Confidence 99999999999999999999999752 0000 000 1111000 00 00
Q ss_pred CCCCCCCCCCCcccccccccccccccc-----ccCCC----ch--HHHHHhhcC-CCchhHHHHHHHHHHHHhcCChHHH
Q 001602 268 STFDGHDEDGSLEAHDETSLDGLSIGW-----LANST----PD--EFVEAIRKS-DAPLHVKYLQTMVECLCILGKVAAA 335 (1046)
Q Consensus 268 ~~~~~~~~~~~~~~~d~~~~~~~~~~f-----l~~~~----~~--~~~ed~~~n-~~~~sf~yi~~lvesL~~LgkL~~A 335 (1046)
.++.++.++...++.+.+. ..+.. .+ ...+++.-. |++.+-.+..++++.++++.|+|.+
T Consensus 234 --------~~~~in~t~l~~sr~~~ea~~~k~~~g~~sv~~~~~~~~~~~l~~~~pe~~sslf~~il~k~~~~~~k~p~~ 305 (982)
T KOG3691|consen 234 --------LYNNINTTTLGTSRQLLEALCHKSDAGSGSVRDIRIVLEKEDLLLSLPEANSSLFRRILEKFTTVDSKSPAI 305 (982)
T ss_pred --------hhcccCccccCccHHHHHHHHHHhhcCCcchhhHHHHHhhccccccchhhHHHHHHHHHHHHhhhhhhhHHH
Confidence 0011111111111100000 00000 00 001111111 4555666888999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhhhhccccccccccccCcccccccccccccccccccccccCccccccccccCcccc
Q 001602 336 GAIICQRLRPTIHEIITSKIKAHAQLINSSRSAIGQAAQTGTTGLHFMKGQLRSYQLPKQKRQNGISLSGTLLAVSPVSA 415 (1046)
Q Consensus 336 l~~i~qRl~~EL~~iV~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 415 (1046)
+.+|..|+.+|++.+|.++...+ +.++. +. ..++ + +
T Consensus 306 ~n~i~~~~~~el~niv~kSt~~i-------~~~g~------~~---------~e~a--t----~---------------- 341 (982)
T KOG3691|consen 306 VNKISERINVELVNIVSKSTYDI-------SLSGE------TD---------REHA--T----F---------------- 341 (982)
T ss_pred HHHHHHHHHHHHHHhhhccchhh-------hcccc------ch---------hhhh--h----c----------------
Confidence 99999999999999998744433 11111 11 1110 0 0
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcccCCCCCccccccCCCCCCCccccCCCCchhhhhHHHH
Q 001602 416 LMAPMGKAQAAAKELLDSILDSVVRIFENHVVVGELLESRSSRHDINTPKSMIADANWNPDSEASVTGGYSIGFSMTVLQ 495 (1046)
Q Consensus 416 ~~~~~~~~~~~l~ell~~lf~kf~~v~q~Hrvv~e~~~~~~~r~~~~~~~~~~~~~~~~~~~~~s~~~~y~~~~vW~~iQ 495 (1046)
+....+|.+|||.||.||.+++++|++++..-.. .+.-.|. .+-...|++.++|.++|
T Consensus 342 -----~tn~f~L~ell~~if~kf~a~aq~Ha~~~~~s~~----~~vv~P~-------------~sq~d~f~~~~~W~k~q 399 (982)
T KOG3691|consen 342 -----DTNHFMLLELLEEIFTKFEAAAQKHASSLHKSLQ----NDVVSPK-------------VSQKDTFDFTDFWQKAQ 399 (982)
T ss_pred -----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----ccccCCc-------------ccCCCcccHHHHHHHHH
Confidence 0012379999999999999999999999773331 1110000 01122699999999999
Q ss_pred HHHHHHHHHHhccCCccchh-hhHhhhhhhccCCCCccccccccC-C-CC-CccccccccCCcccccCCcchhhhhcccc
Q 001602 496 SECQQLICEILRATPEAASA-DAAVQTARLASKAPSKEKSYAYRD-G-SE-DGLTFAFRFTDATISIPNQGADLIRQGWS 571 (1046)
Q Consensus 496 ~Eir~LL~~YL~~~~~~~~~-~~~~~~~~~~s~~~~~~k~~~~~~-~-~~-~~~~~~F~~~d~~~s~~~~~~~~~~~~~~ 571 (1046)
+||+.||.+|++..+..... ..+.+ .+...+.+++.+.+.. . .+ ..-.|.++|+..+....- ++.-+.++
T Consensus 400 s~ielllsE~i~~nn~~~~~~e~s~~---~sp~s~~r~~~~~f~~e~~~~~~s~~f~~~~~~~a~~k~~---~l~~qrs~ 473 (982)
T KOG3691|consen 400 SEIELLLSEYIDNNNNSVKGTEMSIN---NSPASNERKKLFDFTNEIAVEPNSNLFYHRINELANEKAP---ELILQRSN 473 (982)
T ss_pred HHHHHHHHHHhccCCCcccccccccc---CCCCCcchhHHHHhhccccCCCCcccchhHHHHHhhhccc---hhhhhhhh
Confidence 99999999999875543221 11111 1111112222111110 0 00 111244444444332110 11111111
Q ss_pred cC-CCccccCCCC--cccccCCCCcchhhhhhHhHHHHHHHHHhhCCCcccccCccchHHHHHHHHHhhhccchhHHHHH
Q 001602 572 RR-GTNVLQEGYG--TAAVLPEQGIYLAASIYRPVLQFTDKVASMLPQKYSQLGNDGLLAFVENFVKDHLLPTMFVDYRK 648 (1046)
Q Consensus 572 ~~-~~~~~~~g~~--~~~~l~~~sifn~~~il~P~L~Fi~~~~~ilp~~~s~~~~~~l~~Fld~Fv~~vFLPql~~~~~~ 648 (1046)
.. .....+.|.. ....+|+||+|||++||+|++.|++.++.++|.+ .+.+|.++.|+|+||+++||||+...+..
T Consensus 474 ~~~~~~el~~g~s~e~~e~ic~Psvfni~vI~~pll~fie~te~~l~~~--p~q~c~l~~Fm~~yi~~sFl~qv~~~m~~ 551 (982)
T KOG3691|consen 474 ASVSTIELFSGSSKEIVELICKPSVFNIKVILPPLLRFIEETESILKNP--PIQPCSLRNFMDEYIKGSFLPQVYKEMSS 551 (982)
T ss_pred hhhccchhccCcchhhhcccCCcccceeeehhhHHHHHHHHHHHHcCCC--CCCCchHHHHHHHHHHHHhHHHHHHHHHH
Confidence 11 1112233322 2346999999999999999999999999999976 45689999999999999999999999999
Q ss_pred HHHHHhcCCCccccccccccccccccccCCcchhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001602 649 GVQQAISSPAAFRPRAHTAATYVPSIEKGRPVLQGLLAIDFLAKEVLGWAQAMPKFAADLVKYVQTFLERTYERCRTSYM 728 (1046)
Q Consensus 649 ~~~~~~~~~daf~~~~~~~~~~~~~~~~~rPI~k~t~~~~~~~~~l~~ml~t~p~y~~~~~~li~~~L~~yye~c~~~y~ 728 (1046)
.|+.++++.|||+....|... +..+-.+|++|.++.+..-+.++...+++.+.|.+-|+.++|..+..|++-|.+.|+
T Consensus 552 ~ie~~~k~~~a~~l~~s~~~i--~i~k~~~~l~q~~~~ve~~L~~v~n~~~~l~~~~~~~l~m~~~~~~~Y~~~c~~a~~ 629 (982)
T KOG3691|consen 552 HIEGIMKDVDAFRLHRSWKII--PIFKCHLPLLQSFHIVEDYLPIVANLAVDLYELSDYLLNMVCNHLSDYLDICRAALR 629 (982)
T ss_pred HhHhhcccCcceeeecCHhhh--hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998652 233455677777666655667788899999999999999999999999999999999
Q ss_pred HHHh------hhhhhhhcccchhhHHhhcCcccccCCC-CCcCC--C--Cc---cCCCCchhhhhHHHHHhhc-cCCCCC
Q 001602 729 EAVL------EKQSYMLIGRHDIDKLLRLEPASASLPN-GQLDS--V--SS---VNDAETPGVESELRELFLS-LRPIRQ 793 (1046)
Q Consensus 729 ~lv~------~~~s~~~~~~~d~~~l~~~~~~~~~l~~-~~~~~--~--~~---~~~~~l~e~E~~l~~~~~~-~~~i~~ 793 (1046)
+.+. .+++++|+.++|++++++..|+|....- ++... . .. +.++...|.|+.++++.+. +..++.
T Consensus 630 g~~~~~~~~~~~is~aWl~Dddisr~l~klpNw~~~s~~~~~~~~r~E~e~~lq~~~r~~kE~e~li~nLgt~~q~~~s~ 709 (982)
T KOG3691|consen 630 GIVQHVSEVKRKISVAWLKDDDISRQLKKLPNWKNPSLEGQNELCREEEESFLQAGDRNIKESELLISNLGTDSQLSISV 709 (982)
T ss_pred cccCCCcchhhhhhHHHhccchhHHHHHhccCCcccccccccchhhhhcchHhHhhhcccchHhhhhcccchhhhcccCH
Confidence 9997 3588999999999999999999965411 22111 0 00 1122233455544443322 557899
Q ss_pred CcccCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCcccccCCC-CCCCCC------CCchhhhHHHHHHHHHHHHHH
Q 001602 794 ENLIHDENKLILLASLSDSLEYVADSIERLGRATLRESNLVEESRK-PHHNRS------SSAPSRDLASFADEYRKLAID 866 (1046)
Q Consensus 794 ~dlI~d~~~l~~La~L~~SL~Wl~~~i~~L~~~~~~~~~~~~~~~~-~~~~r~------~~~~~~~f~~l~~~f~~La~~ 866 (1046)
++|+.|...++.+|.+++||+||+.+++...+...... ...+.+. +++.-+ +.-....|+.++++|++||++
T Consensus 710 ~~il~~m~~lK~~a~m~ES~~w~a~r~rs~~~~l~~~~-ll~~n~~~~~~~~~dl~~l~dd~~~s~~ee~~~~fq~la~~ 788 (982)
T KOG3691|consen 710 SDILNDMSDLKQLANMHESLEWFADRARSGFDFLPIDN-LLGNNPALMKGYLTDLIELYDDFYKSAYEELADSFQRLAFD 788 (982)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhccccchhh-hhcCCccccccccccchhhhcchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998766555432211 0000011 111111 112345789999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccC-CCC--CCCCCCCCCChHHHHHHHHHHHHHHHhccCCchhhhhhhhccHHHHHHHHHH
Q 001602 867 CLKVLRVEMQLETIFHLQEMTS-RDY--LEDQDAEEPDDFIISLTSQITRRDEEMAPFIAEEKRNYIFGGICGIAANASI 943 (1046)
Q Consensus 867 ~Ll~LrlEvR~~~iy~L~~~~~-~~y--~~~~~~~epDp~I~~Ln~dL~~~de~ls~~L~~~k~~fIF~GL~~li~~~lI 943 (1046)
||+.||+|||+||||||+++.. ++| +-..+++||||.|+.||++|.++|++|+++|+|+|++|||+|||+|++++||
T Consensus 789 cLLlLhlEVRv~Cfh~l~~~s~~~n~~i~~~~~s~e~D~~V~aL~k~l~~~e~klk~~L~e~k~~yIFeGL~hL~s~~LI 868 (982)
T KOG3691|consen 789 CLLLLHLEVRVQCFHYLNPLSKLRNTSIVNRDVSGEPDPSVVALNKDLSTTEEKLKACLNEWKRRYIFEGLGHLVSSILI 868 (982)
T ss_pred HHHHHHHHHHHHHHhhcchhhccCCceeecccccCCCCHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999997553 443 2333499999999999999999999999999999999999999999999999
Q ss_pred HhchhhhhhcHHhHHHHHHhHHHHHHHhhcCCCCChHHHHHhHHHHHHHHHhcCCCHHHHHHHHHhCCCCCCHHHHHHHh
Q 001602 944 KALADMKNINLFGVQQICRNSIALEQALAAIPSIDSEAVRRRLDRVRTYYELLNMPFEALLAFVTEHENLFTTTEYASLL 1023 (1046)
Q Consensus 944 ~~~~~i~~iN~~Gvkkm~rNI~~LQQ~L~nI~~~~~~~v~~~l~ra~~yyeL~~~~~~~ll~~i~e~~~~Fs~~Ey~~ll 1023 (1046)
+++++|++||++|||||||||+||||+|+||+++++ +||++||+||+||+++|++|++.+.+++.+||+.||++|+
T Consensus 869 ~~a~~i~~ln~~~ikkMcRNv~~lQQ~Lsnit~~re----vdld~ar~fy~ll~nt~deile~v~d~~~qfse~e~~qll 944 (982)
T KOG3691|consen 869 SGAQYIERLNEGGIKKMCRNVSALQQILSNITESRE----VDLDKARRFYELLQNTADEILEHVIDARKQFSEPELKQLL 944 (982)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccccc----cccHHHHHHHHHHhcCHHHHHHHHHhccccccHHHHHHHH
Confidence 999999999999999999999999999999998773 4999999999999999999999999999999999999999
Q ss_pred hcccCC-CCC-----chhHHHhHHhhhc
Q 001602 1024 KVNVPG-REI-----PSDALDRVSEILS 1045 (1046)
Q Consensus 1024 ~L~~~~-~~~-----~~~~~~~~~~i~~ 1045 (1046)
+|.|++ .|+ ..++.||+++|+|
T Consensus 945 rls~rS~~g~~k~~~~~e~~qkl~n~i~ 972 (982)
T KOG3691|consen 945 RLSYRSLKGDAKRNGRDELLQKLSNIIG 972 (982)
T ss_pred HHHHHhhccccCCCchHHHHHHHHHHHh
Confidence 999985 444 4888999999984
No 2
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=100.00 E-value=1.4e-32 Score=273.97 Aligned_cols=137 Identities=40% Similarity=0.604 Sum_probs=133.6
Q ss_pred HHHHHHHHhHhhcCC---CCCCcHHHHHHhh--ccCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHH
Q 001602 15 YLREELARIEVSWVA---PRFDSLPHVVHIL--TSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRL 89 (1046)
Q Consensus 15 ~~~~~l~~i~~~w~~---~~f~~~~~~l~~L--~s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~ 89 (1046)
.|+++|+.|+++|++ ++|+|+.+||.+| +|+|+++++++|++.+++++++|+++|++|||+||++|++|++|++.
T Consensus 1 ~l~~~l~~I~~~W~~~~~~~~~pv~~al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~ 80 (142)
T PF04048_consen 1 ELDEVLNEIKDEWPFMLTDDFNPVELALSLLDDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSS 80 (142)
T ss_pred CHHHHHHHHHHHHHHHhcCCCcHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999997 8999999999999 67889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhhHHHHHHHHHHHHHHhhccHHHHHHH
Q 001602 90 FSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKL 151 (1046)
Q Consensus 90 i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~ 151 (1046)
|++||++|..+|+.|++||..|+|++++|++||.++++|++||++|++||+|++||++||+|
T Consensus 81 i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~iL~~Ie~l~~vP~kie~l 142 (142)
T PF04048_consen 81 ISESQERIRELKESLQEAKSLLGCRREELKELWQRSQEYKEMIEILDQIEELRQVPDKIESL 142 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999975
No 3
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=99.22 E-value=8.1e-10 Score=123.95 Aligned_cols=186 Identities=18% Similarity=0.285 Sum_probs=171.7
Q ss_pred HHHhHhhcCCCCCCcHHHHHHhhccCC-----hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHH
Q 001602 20 LARIEVSWVAPRFDSLPHVVHILTSKD-----REGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESA 94 (1046)
Q Consensus 20 l~~i~~~w~~~~f~~~~~~l~~L~s~~-----~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq 94 (1046)
++.|+..|-+++|||..+.+.-+...+ .+...++|....+.++..|-..|.+|+.+|-.++++...|...+.++.
T Consensus 1 l~si~~~yF~~~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~ 80 (291)
T PF10475_consen 1 LESIPAIYFDEDFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEAL 80 (291)
T ss_pred CCCCcHhhcCCCCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888888999999999998885442 245678888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCchHHHHHHHHhhHHHHHHHHHHHHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHhccc
Q 001602 95 ESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLERE 174 (1046)
Q Consensus 95 ~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~l~~~ 174 (1046)
..++.+|+.|..++..+....=++-++..+...+.++++.|..|..+.+.-..|+.++++++|..|.+++.+...+++
T Consensus 81 ~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~-- 158 (291)
T PF10475_consen 81 VICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLE-- 158 (291)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001602 175 GLQTVGALQDVRSELTKLRGVLFYKVLEDLHAH 207 (1046)
Q Consensus 175 ~L~~i~aL~~lr~~L~~q~~~L~d~lieEL~~h 207 (1046)
++.++..+++|+..|+.....+-++|=.+|...
T Consensus 159 ~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~ 191 (291)
T PF10475_consen 159 ELKGYSCVRHLSSQLQETLELIEEQLDSDLSKV 191 (291)
T ss_pred hcccchHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999988888888887654
No 4
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=98.40 E-value=1.2e-05 Score=87.12 Aligned_cols=142 Identities=13% Similarity=0.209 Sum_probs=127.4
Q ss_pred ccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHHh-----ccCCchhhhhhhhccHHHHHHHHHHHhchhhhhhcHHhHH
Q 001602 884 QEMTSRDYLEDQDAEEPDDFIISLTSQITRRDEEM-----APFIAEEKRNYIFGGICGIAANASIKALADMKNINLFGVQ 958 (1046)
Q Consensus 884 ~~~~~~~y~~~~~~~epDp~I~~Ln~dL~~~de~l-----s~~L~~~k~~fIF~GL~~li~~~lI~~~~~i~~iN~~Gvk 958 (1046)
..+....|....-..++.++|-.|.+++..+...| ...+|++-++.+++.+-+++.+.||.|...++++|..|=.
T Consensus 74 ~~Ia~vKWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~~~Lveg~s~vkKCs~eGRa 153 (234)
T PF10474_consen 74 NSIANVKWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFFAFETLVEGYSRVKKCSNEGRA 153 (234)
T ss_pred HHHHHcCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHH
Confidence 34555679777778999999999999999999888 4667888999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHhhcCCCCChHHHHHhHHHHHHHHHhcCCCHHHHHHHHHhCCCCCCHHHHHHHhhcccCC
Q 001602 959 QICRNSIALEQALAAIPSIDSEAVRRRLDRVRTYYELLNMPFEALLAFVTEHENLFTTTEYASLLKVNVPG 1029 (1046)
Q Consensus 959 km~rNI~~LQQ~L~nI~~~~~~~v~~~l~ra~~yyeL~~~~~~~ll~~i~e~~~~Fs~~Ey~~ll~L~~~~ 1029 (1046)
.|....-.+|+.|..++..++- ++.+.+-.|---|+.+++++.+.++++ ..||.....+|++..+.+
T Consensus 154 lM~lD~q~~~~~le~l~~~~~~---p~~~~Ve~YIKAyYl~e~e~~~W~~~h-~eYs~~ql~~Lv~~~~~~ 220 (234)
T PF10474_consen 154 LMQLDFQQLQNKLEKLSGIRPI---PNREYVENYIKAYYLPEEELEEWIRTH-TEYSKKQLVGLVNCAAAS 220 (234)
T ss_pred HHHHHHHHHHHHHHHHcCCCCC---ccHHHHHHHHHHHcCCHHHHHHHHHhC-cccCHHHHHHHHHHHHHh
Confidence 9999999999999999976643 277888888888889999999999998 899999999999998776
No 5
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.00034 Score=85.45 Aligned_cols=217 Identities=16% Similarity=0.203 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhhHHHHH
Q 001602 52 QILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHI 131 (1046)
Q Consensus 52 ~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~ 131 (1046)
++|...++.+|-.|-.=|..--+.|--+|.+++.+...+-+.-+.++.+|++|++.............++-.+...+.++
T Consensus 246 ekLs~yLDvVE~~La~eIs~~SdsFfha~~~~~~Lq~~~~d~~~~vk~Lre~i~~vd~~~~~~s~~Ile~~~~r~n~~kL 325 (951)
T KOG2115|consen 246 EKLSHYLDVVELHLAQEISKRSDSFFHAMTSLHNLQKELRDTMSEVKELRENIKEVDAENVRKSIKILELALTRKNVEKL 325 (951)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44555557777777777788889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001602 132 ISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNR 211 (1046)
Q Consensus 132 i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~l~~~~L~~i~aL~~lr~~L~~q~~~L~d~lieEL~~hLYlK 211 (1046)
.+-|-.|+.|.+.-..+..++++.+|..|.+++.....+|.+.+|.+|.....||.|+....+++-.++++|-...+ +
T Consensus 326 ~~kL~~i~~V~~~q~~vq~ll~~~d~~~ALdlI~t~q~~L~g~eL~gl~sfrhL~~ql~el~~tI~~m~t~eF~~~~--~ 403 (951)
T KOG2115|consen 326 LQKLRLIATVHQAQSTVQLLLSTQDFVGALDLIKTIQELLKGSELLGLHSFRHLRSQLLELYKTIDKMLTREFSTYS--K 403 (951)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhcCchhHHhhHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999975532 2
Q ss_pred CCcchhhhcccccCCCCccccccccccCCCCCccccccccCCCCCCccCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 001602 212 GEYSSAVLSMHEMDDEVPTTVAVAYTTNNSQPLSRRTRLKGDNQFGVHGLADGSHSSTFDGHDEDGSLEAHDETSLDGLS 291 (1046)
Q Consensus 212 s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 291 (1046)
+ +-+. + ++.
T Consensus 404 ~------------Dlg~---------------------------~----~~~---------------------------- 412 (951)
T KOG2115|consen 404 S------------DLGR---------------------------K----LTL---------------------------- 412 (951)
T ss_pred H------------HhCC---------------------------C----chH----------------------------
Confidence 1 1100 0 000
Q ss_pred cccccCCCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001602 292 IGWLANSTPDEFVEAIRKSDAPLHVKYLQTMVECLCILGKVAAAGAIICQRLRPTIHEIITSKIKAH 358 (1046)
Q Consensus 292 ~~fl~~~~~~~~~ed~~~n~~~~sf~yi~~lvesL~~LgkL~~Al~~i~qRl~~EL~~iV~~ti~e~ 358 (1046)
.. ...+|+ .|+.-++-.|.+..|||.+++.-.+.+..+..+++..+|.+.
T Consensus 413 ------~l-s~~lee----------~~L~~~vlgllr~~klpsf~~~~~d~l~~~~k~iikq~i~d~ 462 (951)
T KOG2115|consen 413 ------QL-SILLEE----------DRLSSLVLGLLRTRKLPSFLEGYRDKLIETFKNIIKQKITDL 462 (951)
T ss_pred ------HH-HHHHHH----------hHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 001111 378889999999999999999999999999999998887765
No 6
>PF15469 Sec5: Exocyst complex component Sec5
Probab=97.62 E-value=0.0017 Score=67.94 Aligned_cols=141 Identities=21% Similarity=0.247 Sum_probs=119.3
Q ss_pred HHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHhccCchHHHHHHHHhhHHHHHHHHHH
Q 001602 63 EVVDEVVHAYHTGFNKAIQNYSQILRLFSESAES------IKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLD 136 (1046)
Q Consensus 63 ~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~------i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~ 136 (1046)
..|+.+|.+|+..|=++-.+-..|-..+...... +..|++.+..+.......-+.+-+-..+..+++.++.+|.
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~ 81 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQ 81 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999777665 8999999999999998888889999999999999999999
Q ss_pred HHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 001602 137 QIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDL 204 (1046)
Q Consensus 137 ~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~l~~~~L~~i~aL~~lr~~L~~q~~~L~d~lieEL 204 (1046)
.-..+-.+|.+|...|..++|..|++-..++..+.+++ ...+..++.+.++.+..-..+.+.|.+.|
T Consensus 82 r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~-~~~~~vf~~v~~eve~ii~~~r~~l~~~L 148 (182)
T PF15469_consen 82 RNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKY-KQQVPVFQKVWSEVEKIIEEFREKLWEKL 148 (182)
T ss_pred HHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999873 22566666666666554444444444433
No 7
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=97.58 E-value=0.0024 Score=79.06 Aligned_cols=171 Identities=17% Similarity=0.286 Sum_probs=139.3
Q ss_pred hccCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-H-HHHHHHhccCchHHH
Q 001602 42 LTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVD-L-AEAKRRLGTRNKQLH 119 (1046)
Q Consensus 42 L~s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~-L-~~~k~~L~~~~~~L~ 119 (1046)
|+.++.+..+.++.+..+++...+...|++||.+|-..+.+=.+++.....-...|..+.+. . ......|.....++.
T Consensus 7 l~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~ 86 (593)
T PF06248_consen 7 LSKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQ 86 (593)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 34555677888999999999999999999999999998888888877766666666444332 1 223444455566777
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHhcc---cCCCCccchHHHHHHHHHHHHHH
Q 001602 120 QLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER---EGLQTVGALQDVRSELTKLRGVL 196 (1046)
Q Consensus 120 ~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~l~~---~~L~~i~aL~~lr~~L~~q~~~L 196 (1046)
.|-.+-..-..++++|..|.++.+.=+.++..+.+++|..|.++|.+.-..++. +...+...+..|+.++..++..|
T Consensus 87 ~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L 166 (593)
T PF06248_consen 87 ELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENL 166 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHH
Confidence 777777777888899999999998889999999999999999999999999986 34556789999999999999999
Q ss_pred HHHHHHHHHHhhhccC
Q 001602 197 FYKVLEDLHAHLYNRG 212 (1046)
Q Consensus 197 ~d~lieEL~~hLYlKs 212 (1046)
...|-++.++.+-.+.
T Consensus 167 ~~~L~~~w~~lv~~~~ 182 (593)
T PF06248_consen 167 QYQLSEEWERLVQWDS 182 (593)
T ss_pred HHHHHHHHHhheeecC
Confidence 9999999988887653
No 8
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=97.51 E-value=0.0048 Score=72.08 Aligned_cols=179 Identities=17% Similarity=0.298 Sum_probs=150.8
Q ss_pred CCCCcHHHHHHhhccCC----hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001602 30 PRFDSLPHVVHILTSKD----REGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLA 105 (1046)
Q Consensus 30 ~~f~~~~~~l~~L~s~~----~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~ 105 (1046)
++|||+.+.=.++.+++ -..-...+++....++..+...|.++...=+.+=.....+...|.+=-++|..+|..=+
T Consensus 2 ~dfdpv~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~ 81 (383)
T PF04100_consen 2 PDFDPVDYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAE 81 (383)
T ss_pred CCCCHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999984333 35566778888889999999999988744344445556666677777778888888888
Q ss_pred HHHHHhccCchHHHHHHHHhhHHHHHHHHHHHHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHhcc-cCCCCccchHH
Q 001602 106 EAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER-EGLQTVGALQD 184 (1046)
Q Consensus 106 ~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~l~~-~~L~~i~aL~~ 184 (1046)
.+...+..=-.++++|=..-.-....|.+|..+.-|...=++++.++..|+|.+++.+|.-...+++. ....+|+-+..
T Consensus 82 ~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~yksi~~I~~ 161 (383)
T PF04100_consen 82 ESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPYKSIPQIAE 161 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcccCcHHHHH
Confidence 88888888788999999999999999999999999999999999999999999999999998888852 26789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 001602 185 VRSELTKLRGVLFYKVLEDLHAHLY 209 (1046)
Q Consensus 185 lr~~L~~q~~~L~d~lieEL~~hLY 209 (1046)
|...+...+..|.+.+.++.+. +|
T Consensus 162 L~~~i~~l~~~L~~qI~~df~~-~f 185 (383)
T PF04100_consen 162 LSKRIDQLQNELKEQIFEDFEE-LF 185 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 9999999999999999999865 44
No 9
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=97.35 E-value=0.011 Score=68.05 Aligned_cols=157 Identities=14% Similarity=0.189 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhhHH
Q 001602 49 GEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTL 128 (1046)
Q Consensus 49 ~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~ 128 (1046)
.|-.+|.+....++..+..+-..||..|-.+=.....+...+.+..+++..+...|.+-......-....++........
T Consensus 14 ~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~r~~~ 93 (338)
T PF04124_consen 14 SEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEERKKA 93 (338)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788999999999999999999999999999999999999999999999999998776666655555556666666667
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001602 129 RHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAH 207 (1046)
Q Consensus 129 ~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~l~~~~L~~i~aL~~lr~~L~~q~~~L~d~lieEL~~h 207 (1046)
..+++-.+++-++..+|.-++..|.+++|.+|.++.....++..++ .+++-++.+..+.+..-..+-..|+.-|+.-
T Consensus 94 ~~~l~~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~--~~~~lv~~i~~ev~~~~~~ml~~Li~~L~~~ 170 (338)
T PF04124_consen 94 SLLLENHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSRF--PNIPLVKSIAQEVEAALQQMLSQLINQLRTP 170 (338)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHhc--cCchhHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 7777778889999999999999999999999999999988877664 4588889999998887777777777777655
No 10
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=97.29 E-value=0.023 Score=68.86 Aligned_cols=338 Identities=14% Similarity=0.153 Sum_probs=179.3
Q ss_pred hhhhHhHHHHHHHHHhhCCCcccccCccchHHHHHHHHHhhhccchhHHH-HHHHHHHhcCCCccccccccccccccccc
Q 001602 597 ASIYRPVLQFTDKVASMLPQKYSQLGNDGLLAFVENFVKDHLLPTMFVDY-RKGVQQAISSPAAFRPRAHTAATYVPSIE 675 (1046)
Q Consensus 597 ~~il~P~L~Fi~~~~~ilp~~~s~~~~~~l~~Fld~Fv~~vFLPql~~~~-~~~~~~~~~~~daf~~~~~~~~~~~~~~~ 675 (1046)
+.+..-++.|=+++.....-+. +....++..|..+=.-+.++ +++.+. .++++..+.++|||+.+.+... ....
T Consensus 97 ~HlI~e~~~FD~~L~~~~~y~~-d~~~~~~~vL~~~~~~~~Wl-~~E~~~a~~r~~~i~~s~~aw~~~~~~~~---~~~~ 171 (494)
T PF04437_consen 97 SHLIDEILSFDKELRSLYGYPG-DWQGSTLDVLCQPDWFDRWL-NAEKEFALERFDEIISSPDAWQIDYDDVE---ADSD 171 (494)
T ss_dssp HHHHHHHHHHHHHHHHTS---S-------CGGGS-HHHHHHHH-HHHHHHHHHHHH---------------HT---TSSG
T ss_pred HHHHHHHHHHHHHHHHHcCCCC-ccchhHHHHhcchHHHHHHH-HHHHHHHHHHHhhhcccchhhhhhhcccc---CCch
Confidence 5567778888888888864221 01111222222221223444 344444 4499999999999998754321 0112
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHhccHH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhHHhhcC
Q 001602 676 KGRPVLQGLLAIDFLAKEVLGWAQAMPK--FAADLV-KYVQTFLERTYERCRTSYMEAVLEKQSYMLIGRHDIDKLLRLE 752 (1046)
Q Consensus 676 ~~rPI~k~t~~~~~~~~~l~~ml~t~p~--y~~~~~-~li~~~L~~yye~c~~~y~~lv~~~~s~~~~~~~d~~~l~~~~ 752 (1046)
..+|= ++|..|..++..+..=...+|. |+-.|+ .+=+.+|.+|++++...|+...... +.
T Consensus 172 ~~k~t-~~A~~~~~Ll~~it~ry~~L~~~~~rl~Fl~~iql~lld~~~~~L~~~~~~~~~~~---------s~------- 234 (494)
T PF04437_consen 172 ELKPT-KSAERFVKLLESITDRYRPLPSLSHRLRFLIDIQLPLLDDYHDRLSQSLEAFESST---------ST------- 234 (494)
T ss_dssp GGG-G-GHHHHHHHHHHHHHHHHHHHHH---GG--GHHHHHHHHHHTHHHHHHHHHHHHHT-------------------
T ss_pred hhcch-HHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---------cc-------
Confidence 33444 6888888888888877777775 566777 8889999999999999998433110 00
Q ss_pred cccccCCCCCcCCCCccCCCCchhhhhHHHHHhhccCCCCCCcccCChHHHHHHHHHHHHHHHHHHHHHhhhhhh--ccC
Q 001602 753 PASASLPNGQLDSVSSVNDAETPGVESELRELFLSLRPIRQENLIHDENKLILLASLSDSLEYVADSIERLGRAT--LRE 830 (1046)
Q Consensus 753 ~~~~~l~~~~~~~~~~~~~~~l~e~E~~l~~~~~~~~~i~~~dlI~d~~~l~~La~L~~SL~Wl~~~i~~L~~~~--~~~ 830 (1046)
. ....+...+.-+|.+..|..|+...+......+ -+.
T Consensus 235 -----~------------------------------------~~~~~~~~l~~l~~~lnsa~yi~~~L~eW~e~~~Flq~ 273 (494)
T PF04437_consen 235 -----L------------------------------------ASLSGDSGLERLCKILNSANYIENVLREWSEDVFFLQM 273 (494)
T ss_dssp ------------------------------------------SCEEHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHH--
T ss_pred -----h------------------------------------hhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCeeehh
Confidence 0 011122334447777788888877665554422 100
Q ss_pred ---CcccccCCCCC--CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC-CCCCCC-----CCCCC
Q 001602 831 ---SNLVEESRKPH--HNRSSSAPSRDLASFADEYRKLAIDCLKVLRVEMQLETIFHLQEMTS-RDYLED-----QDAEE 899 (1046)
Q Consensus 831 ---~~~~~~~~~~~--~~r~~~~~~~~f~~l~~~f~~La~~~Ll~LrlEvR~~~iy~L~~~~~-~~y~~~-----~~~~e 899 (1046)
.....+ .... ..+.+..-..-|++.+..|+.|..+++-.+-=-++-..=-.+.+.++ ..|... ..+..
T Consensus 274 ~~~~~~~~~-~~~~~~~~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~v~~~~k~~lk~Y~k~~~W~~~~~~~~~~~~~ 352 (494)
T PF04437_consen 274 RAKESESSN-NSLEDIANETSSEEGSIFDETISAYEKLRKRMLESIVDRVVKEFKASLKAYFKRSQWSSIESPSDSSPLS 352 (494)
T ss_dssp -----------HHHHHHHHHTT--S-TTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHT--GGGT-----------
T ss_pred hccchhhcc-cccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCcccccccccCC
Confidence 000000 0000 00000011235999999999998776655433222222222233333 446322 22345
Q ss_pred CChHHHHHHHHHHHHHHHhccCCchhhhhhhhccHHHHHHHHHHHhchhhhhhcHHhHHHHHHhHHHHHHHhhcCCCCCh
Q 001602 900 PDDFIISLTSQITRRDEEMAPFIAEEKRNYIFGGICGIAANASIKALADMKNINLFGVQQICRNSIALEQALAAIPSIDS 979 (1046)
Q Consensus 900 pDp~I~~Ln~dL~~~de~ls~~L~~~k~~fIF~GL~~li~~~lI~~~~~i~~iN~~Gvkkm~rNI~~LQQ~L~nI~~~~~ 979 (1046)
|.|.....-.-|...=..|..+|++....-|+..+...++..|+...-...+.|..|+.++...+-+|-..+..-. .+|
T Consensus 353 ~S~el~~~L~~L~~~L~~L~~~L~~~~f~~i~r~ia~~l~~~l~~~Il~~n~Fs~~Ga~Ql~~D~~~L~~~~~~~~-~~p 431 (494)
T PF04437_consen 353 PSPELVPALSLLRSRLSFLERSLPPADFRRIWRRIASKLDDYLWESILMSNKFSRAGAAQLQFDMRALFSVFSQYT-PRP 431 (494)
T ss_dssp --GGGHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHTTTTTS-B-HHHHHHHHHHHHHHHTTS--TT-SGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhhhcCeeChhHHHHHHHHHHHHHHHHHhhc-cCH
Confidence 5566666666666666677788999999999999999999999999988889999999999999988777766644 455
Q ss_pred HHHHHhHHHHHHHHHhcCCCHHH
Q 001602 980 EAVRRRLDRVRTYYELLNMPFEA 1002 (1046)
Q Consensus 980 ~~v~~~l~ra~~yyeL~~~~~~~ 1002 (1046)
+ ..|.+.+.--.|+.++.+.
T Consensus 432 ~---~~f~~l~E~~~LL~L~~~~ 451 (494)
T PF04437_consen 432 E---AFFKRLREACKLLNLPYGS 451 (494)
T ss_dssp ----HHHHHHHHHHHHHGGGG-C
T ss_pred H---HHHHHHHHHHHHcCCCCcc
Confidence 4 3688888888888876553
No 11
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.092 Score=64.52 Aligned_cols=173 Identities=13% Similarity=0.188 Sum_probs=136.3
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 001602 35 LPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTR 114 (1046)
Q Consensus 35 ~~~~l~~L~s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~ 114 (1046)
.|.+-.++.....+.-+++|+.--..-++.+..+-+.|||||=.||.--.++.+...+=+..+...-.+|+++-..|-.+
T Consensus 34 gP~lRs~~d~~~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~ 113 (800)
T KOG2176|consen 34 GPTLRSVYDGNQHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQESGKELIVK 113 (800)
T ss_pred hhHHHHHHccCCcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 34455556666666777888877777889999999999999999999999999988888889999999999999999999
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHH
Q 001602 115 NKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRG 194 (1046)
Q Consensus 115 ~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~l~~~~L~~i~aL~~lr~~L~~q~~ 194 (1046)
.++|.+...-+....+.++.|..-=.+...-.|..++|++|+|+.|.+.+.. +...-=+.+.+-+=+..+-.+.-.-+.
T Consensus 114 ~e~lv~~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktle~-lE~~yL~~~~~~~~~~~i~~~Ip~ik~ 192 (800)
T KOG2176|consen 114 KEDLVRCRTQSRNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTLES-LEKVYLPRVSNFRFLIVIQNRIPFIKE 192 (800)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH-HHHHHHHhcccchhhHHHhhcchHHHH
Confidence 9999999999999999999999888888889999999999999999887642 222222233444444445555555566
Q ss_pred HHHHHHHHHHHHhh
Q 001602 195 VLFYKVLEDLHAHL 208 (1046)
Q Consensus 195 ~L~d~lieEL~~hL 208 (1046)
..-++...++++-|
T Consensus 193 ~i~~~~~~~~~e~L 206 (800)
T KOG2176|consen 193 VIKSKSMSDFREWL 206 (800)
T ss_pred HHHHHHHHHHHHHH
Confidence 66677777777666
No 12
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=96.07 E-value=0.18 Score=50.13 Aligned_cols=86 Identities=12% Similarity=0.249 Sum_probs=61.1
Q ss_pred hcCCCCCCcHHHHHHhhc--------cCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001602 26 SWVAPRFDSLPHVVHILT--------SKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESI 97 (1046)
Q Consensus 26 ~w~~~~f~~~~~~l~~L~--------s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i 97 (1046)
.|-.|+|||..++=.+|. ..+-.....++....+++++.|+..|.+||..+=+....=...-..++.-+..+
T Consensus 2 ~fl~~dFd~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v 81 (132)
T PF10392_consen 2 AFLSPDFDPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSV 81 (132)
T ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 356799999999999996 555578889999999999999999999999999665544444444444444444
Q ss_pred HHHHHHHHHHHHHh
Q 001602 98 KELKVDLAEAKRRL 111 (1046)
Q Consensus 98 ~~lk~~L~~~k~~L 111 (1046)
..+..+...-+..+
T Consensus 82 ~~L~~s~~RL~~eV 95 (132)
T PF10392_consen 82 ESLQSSYERLRSEV 95 (132)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 13
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=0.34 Score=58.91 Aligned_cols=188 Identities=14% Similarity=0.223 Sum_probs=138.5
Q ss_pred HHHHHhHhhcCCCCCCcHHHHHHhh----ccCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHH
Q 001602 18 EELARIEVSWVAPRFDSLPHVVHIL----TSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSES 93 (1046)
Q Consensus 18 ~~l~~i~~~w~~~~f~~~~~~l~~L----~s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~s 93 (1046)
+++..|.+..+-|+|+.+...=.++ +-.+-+.-+.+++..-.++++.|+.+|..+-+.=.+.=-+-..+..+|.+=
T Consensus 5 ~v~~~I~q~~~t~~f~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL 84 (793)
T KOG2180|consen 5 NVLYDINQMIPTPEFNFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEEL 84 (793)
T ss_pred hHHHHHHHhcCCcchhHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHH
Confidence 5778888888889999999988887 334446667777778889999999999765443333322223333333333
Q ss_pred HHHHHHHHHHHHHHHHHhccCchHHHHHHHHhhHHHHHHHHHHHHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHhcc
Q 001602 94 AESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER 173 (1046)
Q Consensus 94 q~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~l~~ 173 (1046)
-++|.++|+.-+.....+..--.++++|=-.-.....-|.+|..+.-|...=+++.++++++.|-+|+..|.--+.+++-
T Consensus 85 ~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~ 164 (793)
T KOG2180|consen 85 FQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNH 164 (793)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHH
Confidence 33444444444444444444456778888888888889999999999999999999999999999999999999998872
Q ss_pred -cCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 001602 174 -EGLQTVGALQDVRSELTKLRGVLFYKVLEDLH 205 (1046)
Q Consensus 174 -~~L~~i~aL~~lr~~L~~q~~~L~d~lieEL~ 205 (1046)
..-.+|+-+..|+..+...+..|...+-+...
T Consensus 165 F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~ 197 (793)
T KOG2180|consen 165 FIAYKSVDEIANLSESIDKLKKSLLSQIFQDFK 197 (793)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 25678888888888888888888877777664
No 14
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=0.35 Score=57.76 Aligned_cols=172 Identities=17% Similarity=0.218 Sum_probs=136.4
Q ss_pred HHHHhhc--cCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 001602 37 HVVHILT--SKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTR 114 (1046)
Q Consensus 37 ~~l~~L~--s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~ 114 (1046)
.+..+++ -+...++...+.+....+++.+..+-..+|..|-..=..++.|...+..++.....+--.+-+=.+....-
T Consensus 24 ~v~~l~~~~~e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l~l~~~~L~s~~~~f 103 (581)
T KOG2069|consen 24 YVRELTTKPLEELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKELSLQLPELTSPCKRF 103 (581)
T ss_pred HHHHHcCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHhhhHHHHH
Confidence 4444443 34446777789999999999999999999999999888899999999999888877666554443333333
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHH
Q 001602 115 NKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRG 194 (1046)
Q Consensus 115 ~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~l~~~~L~~i~aL~~lr~~L~~q~~ 194 (1046)
.+....+....-.-+.+++-.+++-++..+|+.++..|...+|.+|.++-.-+.++-++.+.. ++.++++.+....-.
T Consensus 104 ~~~~~~i~e~~~~~~~~l~~~~~l~ellelp~lM~~cir~~~~~ealel~a~~~RL~~~~~~~--pvi~~i~~~v~~tv~ 181 (581)
T KOG2069|consen 104 QDFAEEISEHRRLNSLTLDKHPQLLELLELPQLMDRCIRNGYYDEALELAAYASRLKQRFGTI--PVIQEIATEVEQTVQ 181 (581)
T ss_pred HHHHHHhhHhHHHHHHHHhhcchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcccc--hHHHHHHHHHHHHHH
Confidence 455556666666667788888899999999999999999999999999999999998875554 888888888888888
Q ss_pred HHHHHHHHHHHHhhhc
Q 001602 195 VLFYKVLEDLHAHLYN 210 (1046)
Q Consensus 195 ~L~d~lieEL~~hLYl 210 (1046)
.|-+.|++-+..-+=+
T Consensus 182 ~ll~qL~~~l~~pl~l 197 (581)
T KOG2069|consen 182 KLLEQLIQQLRTPLQL 197 (581)
T ss_pred HHHHHHHHHHhhhhhH
Confidence 8888888887766544
No 15
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=95.31 E-value=0.016 Score=57.63 Aligned_cols=126 Identities=13% Similarity=0.179 Sum_probs=38.2
Q ss_pred hcCCCCCCcHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001602 26 SWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLA 105 (1046)
Q Consensus 26 ~w~~~~f~~~~~~l~~L~s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~ 105 (1046)
++-.++|+|-..+...=.-...+.-...|....+.++.+|-++|+++|++|=+-=.+...+-..|..-+.-+..+++.+.
T Consensus 7 ~F~~~~Fd~d~Fl~~~~~~~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~ 86 (133)
T PF06148_consen 7 EFTKPDFDVDEFLSSNRRYVSLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVE 86 (133)
T ss_dssp -------------------------------------------------------------------HHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence 44458999888877732344446666777888899999999999999999999888888899999999999999999999
Q ss_pred HHHHHhccCchHHHHHHHHhhHHHHHHHHHHHHHHhhccHHHHHHH
Q 001602 106 EAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKL 151 (1046)
Q Consensus 106 ~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~ 151 (1046)
+.+..+....+.+...-.......+....|..+-.+..+=+++|.+
T Consensus 87 ~~~~~l~~~~~~i~~~l~~~~~l~~~k~~l~~~l~~~~~~~kle~l 132 (133)
T PF06148_consen 87 SVRDELDNTQEEIEDKLEERKELREEKALLKLLLDISESLEKLEDL 132 (133)
T ss_dssp HHHHS-STTHHHHHHHHHHHHHHHHHHHT-SSSSHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 9999999999988877777766666665555554444444444443
No 16
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=93.50 E-value=0.54 Score=53.59 Aligned_cols=141 Identities=18% Similarity=0.274 Sum_probs=71.1
Q ss_pred cccCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhccCCchhhhhhhhccHHHHHHHHHHHhc--hhhhhhcHHhHHHHHH
Q 001602 885 EMTSRDYLEDQDAEEPDDFIISLTSQITRRDEEMAPFIAEEKRNYIFGGICGIAANASIKAL--ADMKNINLFGVQQICR 962 (1046)
Q Consensus 885 ~~~~~~y~~~~~~~epDp~I~~Ln~dL~~~de~ls~~L~~~k~~fIF~GL~~li~~~lI~~~--~~i~~iN~~Gvkkm~r 962 (1046)
.+..-+|.+....++|+.+|.+|..-|..+=+..-..||+.-+..+.-|-..-|+..|+.-. ..+++||.+|++.+-.
T Consensus 162 ela~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~ 241 (311)
T PF04091_consen 162 ELAEYDWTPTEPPGEPSDYINDLIQFLETTFSSTLTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDL 241 (311)
T ss_dssp TT--TT--------S--HHHHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHH
T ss_pred hhcccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHH
Confidence 44556799999999999999999999988887777789988888777777777777777777 8999999999999999
Q ss_pred hHHHHHHHhhcCCCCCh--HHHHHhHHHHHHHHHhcCC-CHHHHHHHHHhCCCCCCHHHHHHHhhcc
Q 001602 963 NSIALEQALAAIPSIDS--EAVRRRLDRVRTYYELLNM-PFEALLAFVTEHENLFTTTEYASLLKVN 1026 (1046)
Q Consensus 963 NI~~LQQ~L~nI~~~~~--~~v~~~l~ra~~yyeL~~~-~~~~ll~~i~e~~~~Fs~~Ey~~ll~L~ 1026 (1046)
+|-.|.+-.+++..... .....-|...||.-.|+.. ++++..+.-.. ..+|..-.+..+..|+
T Consensus 242 Dv~~lE~f~~~~~~~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~~~r-~~kY~~v~p~~~~~lL 307 (311)
T PF04091_consen 242 DVKYLESFADSLPVPGNNIPSLRETFAELRQLVDLLLSDDWEEYLDPGIR-ERKYSRVKPEKAIKLL 307 (311)
T ss_dssp HHHHHHHHHTT-SSSS--SSTTGGGGHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHHHhcCCHHHHhCcccc-ccccCCCCHHHHHHHH
Confidence 99999999999832110 1112368888888887754 55666443322 3467666666665543
No 17
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=87.42 E-value=5.9 Score=35.98 Aligned_cols=76 Identities=17% Similarity=0.139 Sum_probs=51.4
Q ss_pred CCCCCCcHHHHHHhhccCCh---hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 001602 28 VAPRFDSLPHVVHILTSKDR---EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVD 103 (1046)
Q Consensus 28 ~~~~f~~~~~~l~~L~s~~~---~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~ 103 (1046)
..++|||-.++=.+|..... ..-..++.......+..|+.+|.+||..|=.+-..=..+-..+..-+..+..++..
T Consensus 2 ~~~~fd~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~ 80 (87)
T PF08700_consen 2 DSENFDVDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQS 80 (87)
T ss_pred CCCcCCHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999854443 24446777788999999999999999998665544444444443334444433333
No 18
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.15 E-value=15 Score=44.06 Aligned_cols=116 Identities=17% Similarity=0.186 Sum_probs=70.1
Q ss_pred HhhcCCCCCCcHHHHHHhh-ccCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHH-------
Q 001602 24 EVSWVAPRFDSLPHVVHIL-TSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAE------- 95 (1046)
Q Consensus 24 ~~~w~~~~f~~~~~~l~~L-~s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~------- 95 (1046)
+.++-.++||.=. -+... ..++.+.-++.|+-.++-++.++-+++++-|-+|=+-=.+--.+-..+..-+.
T Consensus 25 k~eFmkedFdve~-f~s~~R~~v~letLrddLrlylksl~~aMieLIN~DYADFVnLStnLVgld~aln~i~qpL~qlre 103 (705)
T KOG2307|consen 25 KTEFMKEDFDVER-FMSLARQKVDLETLRDDLRLYLKSLQNAMIELINDDYADFVNLSTNLVGLDDALNKIEQPLNQLRE 103 (705)
T ss_pred hhhhccccCCHHH-HHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccHHHHHHHHHhHHHHHHH
Confidence 3455668888544 34444 67777888889999999999999999999999997655544444444444444
Q ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHHHhhHHHHHHHHHHHHHH
Q 001602 96 SIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEG 140 (1046)
Q Consensus 96 ~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~ 140 (1046)
.|..+|+++.++-..+..+.+++..+...-+.....+.++..||+
T Consensus 104 ei~s~rgsV~ea~~alr~q~se~~~~Re~k~~lldl~~v~~~ieK 148 (705)
T KOG2307|consen 104 EIKSTRGSVGEAERALRQQCSELCSNREKKIELLDLIYVLVAIEK 148 (705)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444433
No 19
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.82 E-value=7.1 Score=46.07 Aligned_cols=179 Identities=13% Similarity=0.091 Sum_probs=127.6
Q ss_pred CCCCCCcHHHHHHhhccCChhHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001602 28 VAPRFDSLPHVVHILTSKDREGEV---QILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDL 104 (1046)
Q Consensus 28 ~~~~f~~~~~~l~~L~s~~~~~~~---~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L 104 (1046)
..+.|||=-++..++.....+.-+ .+.-.+-..+|.-++-+|.|+|+-|-++-.+-.+|.+.+..--.....+-+..
T Consensus 29 ngahFDpEvyldkL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~me~eMd~L~~~m 108 (636)
T KOG2346|consen 29 NGAHFDPEVYLDKLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGMEQEMDGLEEVM 108 (636)
T ss_pred CCCCCCHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhhcchhhhHHHHH
Confidence 348999998888887544443222 12233346889999999999999999998888888888877777776666666
Q ss_pred HHHHHHhccCchHHHHHHHHhhHHHHHHHHHHHHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCccchHH
Q 001602 105 AEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQD 184 (1046)
Q Consensus 105 ~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~l~~~~L~~i~aL~~ 184 (1046)
....+....-.+.|.+=...-.+....-.+|.++..+-..|.++..-+....|-+|+.--..|...+..|+ +.+..++
T Consensus 109 s~i~~~s~~l~g~L~ekre~I~kLg~~~~llrkvqfifdLP~rLrkc~~~~aYG~avR~~~~A~~~L~qY~--~~psfq~ 186 (636)
T KOG2346|consen 109 SSIQSKSDGLAGSLFEKRELIKKLGQRPPLLRKVQFIFDLPRRLRKCGRAPAYGAAVRGSSEATGKLRQYD--GRPSFQE 186 (636)
T ss_pred HHHhhhhccccchhHHhHHHHHHhcCCccchhhhHHHhhhHHHHHHhccccccchhhccccccccchhhcC--CCCcHHH
Confidence 65555554445555444444444445556788899999999999999999999999988777776665543 3444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 001602 185 VRSELTKLRGVLFYKVLEDLHAHLYNRG 212 (1046)
Q Consensus 185 lr~~L~~q~~~L~d~lieEL~~hLYlKs 212 (1046)
. ....+..+++++.-|...+..-+
T Consensus 187 ~----~~~seei~~rl~~qL~~rlr~~~ 210 (636)
T KOG2346|consen 187 D----DVPSEEIRLRLVAQLGTKLRSDS 210 (636)
T ss_pred h----ccchHHHHHHHHHHHHHHhccCC
Confidence 3 34556788999999988887543
No 20
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=80.52 E-value=33 Score=43.73 Aligned_cols=150 Identities=12% Similarity=0.163 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHH-------HHHHHHhhHHHHH
Q 001602 59 DIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQL-------HQLWYRSVTLRHI 131 (1046)
Q Consensus 59 ~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L-------~~L~~~s~~~~~~ 131 (1046)
+++.+.|..+=.++-+.+-.+=..-..+...|.++...+.+|-..|......|..-++++ +.|-..+.-++..
T Consensus 8 ~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L 87 (701)
T PF09763_consen 8 ERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLL 87 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHH
Confidence 344444444444444555555555677788888888888888888888888888888887 5566677777777
Q ss_pred HHHHHHHHHhhccHHHHHHHHhccCH---------HHHHHHHHHHHHHh------cccCCCCccchHHHHHHHHHHHHHH
Q 001602 132 ISLLDQIEGIAKVPARIEKLIAGKQY---------YAAVQLHAQSALML------EREGLQTVGALQDVRSELTKLRGVL 196 (1046)
Q Consensus 132 i~~L~~ie~l~~vP~~ie~~i~~k~y---------~~A~~lL~~~~~~l------~~~~L~~i~aL~~lr~~L~~q~~~L 196 (1046)
++-|+.|=.-..+|+.-...+.+..+ ..|...|..|+..+ ..+++..+.|+++=|+.++.....+
T Consensus 88 ~~eL~~Ll~~l~i~~~~l~~L~~~~l~~~~~l~~~e~a~~~L~~Al~~i~~~~~~~~~~~~~M~Av~er~~~~~~~~~~F 167 (701)
T PF09763_consen 88 LNELENLLDTLSIPEEHLEALRNASLSSPDGLEKIEEAAEALYKALKAIRPDLEKLDPGLGQMRAVKERREEYEKVSDKF 167 (701)
T ss_pred HHHHHHHHHhcCCCHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 77788777777888888777776655 45777888888883 3458889999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 001602 197 FYKVLEDLHAHL 208 (1046)
Q Consensus 197 ~d~lieEL~~hL 208 (1046)
...+++.|.+..
T Consensus 168 ~~r~~~~l~~~F 179 (701)
T PF09763_consen 168 CKRLSRFLNNMF 179 (701)
T ss_pred HHHHHHHHHHHH
Confidence 999999997766
No 21
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.00 E-value=60 Score=40.40 Aligned_cols=158 Identities=9% Similarity=0.087 Sum_probs=106.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhHHH--HH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHH
Q 001602 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTG--FN-KAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLW 122 (1046)
Q Consensus 46 ~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~--Fn-~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~ 122 (1046)
.....++++....+++++.|+.++.+-.+- +| ..|+.-.. .+.---....+++..+.....+-..-.+..+.|=
T Consensus 35 qi~~~le~~~~ee~~~~~~L~~lL~q~~~ie~~~~~~l~r~~~---~L~~v~~da~el~~~i~nt~~lAe~Vs~kVr~lD 111 (773)
T KOG0412|consen 35 QIDLLLERIAREEARVDKDLEALLSQQQTIEGENMSALTRSAE---NLLTVEGDAKELTDAIKNTCVLAETVSGKVRALD 111 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhh---hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335667778888899999999999884333 44 34433332 2223333344444444444444444567888999
Q ss_pred HHhhHHHHHHHHHHHHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHH----hcccCCCCccchHHHHHHH---HHHHHH
Q 001602 123 YRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALM----LEREGLQTVGALQDVRSEL---TKLRGV 195 (1046)
Q Consensus 123 ~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~----l~~~~L~~i~aL~~lr~~L---~~q~~~ 195 (1046)
.+.-...+.++..++|-.++-+-+-+..-|..+.|..|...+.+.+.+ ++...-..+++.+.++..+ .+-++.
T Consensus 112 la~~Rv~~clq~v~dvrdlk~C~~gv~~Al~seDyE~AA~~IhRflslD~~~i~~~~~~~~~~ts~i~~~~~~L~~a~e~ 191 (773)
T KOG0412|consen 112 LAQNRVNECLQRVDDVRDLKNCIEGVDTALESEDYEKAATHIHRFLSLDQALIESRFAKQVVPTSEISDPYETLKEAKER 191 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHhhhhhhccCCchhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998876 2332334445555554443 333444
Q ss_pred HHHHHHHHHHH
Q 001602 196 LFYKVLEDLHA 206 (1046)
Q Consensus 196 L~d~lieEL~~ 206 (1046)
|.-++-+++|.
T Consensus 192 L~~l~~~~f~e 202 (773)
T KOG0412|consen 192 LSKLFKERFTE 202 (773)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 22
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=79.76 E-value=1.9e+02 Score=37.46 Aligned_cols=182 Identities=15% Similarity=0.181 Sum_probs=112.9
Q ss_pred hcCCCCCCcHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHhhhhHHHHHHHHHHHHHHHHHH
Q 001602 26 SWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGF----NKAIQNYSQILRLFSESAESIKELK 101 (1046)
Q Consensus 26 ~w~~~~f~~~~~~l~~L~s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~F----n~sI~sy~~i~~~i~~sq~~i~~lk 101 (1046)
.+.+++||+..-+=..+.+.+.+....++......+...|+-.+.+=...+ ..++.+-=++...+..-++.+..+|
T Consensus 4 ~f~~~~FD~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~ 83 (766)
T PF10191_consen 4 AFSDDDFDVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQ 83 (766)
T ss_pred hhCcCCCCHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 355689999988888886555543333332222333333333332222222 2223333355556666666666666
Q ss_pred HHHHHHHHHhccCc-------hHHHHHHHHhhHHHHHHHHHHHHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHhccc
Q 001602 102 VDLAEAKRRLGTRN-------KQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLERE 174 (1046)
Q Consensus 102 ~~L~~~k~~L~~~~-------~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~l~~~ 174 (1046)
+.+...+..+..-. ..|.+|-.-..+-...-+.|.+=+..-..-..||.++..+.|..+.+-|.+.-+-+.-
T Consensus 84 ~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~- 162 (766)
T PF10191_consen 84 EQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRSLAV- 162 (766)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-
Confidence 66666666553211 1233333333333444455556677777888999999999999999988877776644
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001602 175 GLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLY 209 (1046)
Q Consensus 175 ~L~~i~aL~~lr~~L~~q~~~L~d~lieEL~~hLY 209 (1046)
|.+++.-.+=|..|+..++.|..++--.|..-+=
T Consensus 163 -l~~~pd~~~r~~~le~l~nrLEa~vsp~Lv~al~ 196 (766)
T PF10191_consen 163 -LQDVPDYEERRQQLEALKNRLEALVSPQLVQALN 196 (766)
T ss_pred -HcCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6788888999999999999998888777765553
No 23
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=70.29 E-value=1.1e+02 Score=34.87 Aligned_cols=78 Identities=15% Similarity=0.234 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHH-----HHHHHHHHHHHHHHHHHHH-HHHHhccCchHHHHHH
Q 001602 49 GEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQIL-----RLFSESAESIKELKVDLAE-AKRRLGTRNKQLHQLW 122 (1046)
Q Consensus 49 ~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~-----~~i~~sq~~i~~lk~~L~~-~k~~L~~~~~~L~~L~ 122 (1046)
.-.++++...+.+...+...+..+.+.++..-..+..-. ..+...++++..+++.|.. .+..|...+..|..+.
T Consensus 147 ~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~p~~~l~~~~~~Ld~l~~rL~~~~~~~l~~~~~~L~~l~ 226 (319)
T PF02601_consen 147 ELLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRLPERKLEQQQQRLDELKQRLKQAIQQKLQRKRQRLQNLS 226 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666677777777778877777777766665544 5688888888888888866 5666677777777766
Q ss_pred HHhh
Q 001602 123 YRSV 126 (1046)
Q Consensus 123 ~~s~ 126 (1046)
.+-.
T Consensus 227 ~~l~ 230 (319)
T PF02601_consen 227 NRLK 230 (319)
T ss_pred Hhhh
Confidence 4333
No 24
>PRK11637 AmiB activator; Provisional
Probab=64.64 E-value=1.9e+02 Score=34.58 Aligned_cols=146 Identities=12% Similarity=0.165 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhh
Q 001602 47 REGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSV 126 (1046)
Q Consensus 47 ~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~ 126 (1046)
.+.+++++++..+.+++.++.+=.+. +........+...|...+.++..+...+...+..|.....++.++-.+-.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~----~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQR----ASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666655555322211 12222233333444444444444444444444444444444444333322
Q ss_pred HHH-HHHHHHHHHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHH
Q 001602 127 TLR-HIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFY 198 (1046)
Q Consensus 127 ~~~-~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~l~~~~L~~i~aL~~lr~~L~~q~~~L~d 198 (1046)
+.+ .+-+.+..+-.--..+ -++-+++...+-.+.+++ .-+..+...+-.-|..+.+.+.+|..++..|-+
T Consensus 121 ~~~~~l~~rlra~Y~~g~~~-~l~vLl~a~~~~~~~r~~-~~l~~i~~~d~~~l~~l~~~~~~L~~~k~~le~ 191 (428)
T PRK11637 121 AQERLLAAQLDAAFRQGEHT-GLQLILSGEESQRGERIL-AYFGYLNQARQETIAELKQTREELAAQKAELEE 191 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCc-HHHHHhcCCChhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 2222333333333332 456666666554433221 111223333445566677777777777666543
No 25
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.23 E-value=1.9e+02 Score=35.34 Aligned_cols=162 Identities=12% Similarity=0.059 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccCchHHHHHHHHh
Q 001602 49 GEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESI---KELKVDLAEAKRRLGTRNKQLHQLWYRS 125 (1046)
Q Consensus 49 ~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i---~~lk~~L~~~k~~L~~~~~~L~~L~~~s 125 (1046)
..+.+++.....+.+.+.. +-.++..++.+++.|+.+...++...... ...=..+..+-+.+.+-.+++. .-.++
T Consensus 281 ~~i~~l~~~l~~l~~~~~~-~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~-~~~~~ 358 (503)
T KOG2273|consen 281 EKIDKLEQQLKKLSKQVQR-LVKRRRELASNLAELGKALAQLSALEGETDELSEALSGLAKVIESLSKLLEKLT-AEKDS 358 (503)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhH
Confidence 5566677777777777777 77888999999999999999999988844 3333344444444443332221 12222
Q ss_pred hHHHHHHHH-HHHHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 001602 126 VTLRHIISL-LDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDL 204 (1046)
Q Consensus 126 ~~~~~~i~~-L~~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~l~~~~L~~i~aL~~lr~~L~~q~~~L~d~lieEL 204 (1046)
..+.+.++. +.-++.++.+.+.-.. ....+..|...+......+++...+...--...+..+...+-.....-+.++
T Consensus 359 ~~~~~~l~~~i~~~~~~k~~~~~r~~--~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~k~~~~~~e~~~~~~~~~~~ 436 (503)
T KOG2273|consen 359 KKLAEQLREYIRYLESVKSLFEQRSK--ALQKLQEAQRELSSKKEQLSKLKKKNRSSFGFDKIDLAEKEIEKLEEKVNEL 436 (503)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHH
Confidence 222222221 1113444444443333 3344555555555554444442222111003334444555555555778888
Q ss_pred HHhhhccCCc
Q 001602 205 HAHLYNRGEY 214 (1046)
Q Consensus 205 ~~hLYlKs~~ 214 (1046)
++.++.+...
T Consensus 437 ~~~~~~~~~~ 446 (503)
T KOG2273|consen 437 EELLALKELE 446 (503)
T ss_pred HHHHHhhhHH
Confidence 8888877644
No 26
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=58.74 E-value=26 Score=39.63 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=69.0
Q ss_pred cCchHHHHHHHHhhHHHHHHHHHHHHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHH
Q 001602 113 TRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKL 192 (1046)
Q Consensus 113 ~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~l~~~~L~~i~aL~~lr~~L~~q 192 (1046)
...++|.+|-.....++++-++-..+-=...+|+-|+.+|.+++|..|+.. ..++.+.++ .+-+.=|+.||+.-
T Consensus 146 Fd~del~~Lv~~va~~~~a~~L~~sLgl~~k~~d~V~~LI~~g~~ieAv~f-i~~f~L~dk-----fpPv~lLk~yl~~~ 219 (290)
T PF07899_consen 146 FDEDELLKLVVSVARRKQAPELCRSLGLSDKMPDIVEKLIKKGKQIEAVRF-IYAFGLVDK-----FPPVPLLKSYLEDS 219 (290)
T ss_pred cCHHHHHHHHHHhcchHhhHHHHHHcCchhhhHHHHHHHHHCCCccchHHH-HHHHcCCCC-----CCCHHHHHHHHHHH
Confidence 357999999999999999999999988889999999999999999999998 566777766 45666799999987
Q ss_pred HHHHHHH
Q 001602 193 RGVLFYK 199 (1046)
Q Consensus 193 ~~~L~d~ 199 (1046)
+.+-..+
T Consensus 220 k~~~~~~ 226 (290)
T PF07899_consen 220 KKAAKRI 226 (290)
T ss_pred HHHHHHH
Confidence 7765543
No 27
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.19 E-value=4.3e+02 Score=33.20 Aligned_cols=140 Identities=16% Similarity=0.080 Sum_probs=98.1
Q ss_pred hccCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---Hhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 001602 42 LTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNK---AIQ----NYSQILRLFSESAESIKELKVDLAEAKRRLGTR 114 (1046)
Q Consensus 42 L~s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~---sI~----sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~ 114 (1046)
+.+.-.+...++|.+....+++.|..-|-.-|.+.=. .+. .-......+++-|+.|+.||..+.+=.+.+..+
T Consensus 68 ~~s~~ia~q~~~L~q~lr~ldrqLh~qv~~Rh~allaQat~~~~~d~~l~sl~~~v~~lqs~i~riknd~~epyk~i~~k 147 (797)
T KOG2211|consen 68 KESNRIATQCDDLTQKLRELDRQLHAQVLKRHMALLAQATEELFEDLELRSLLVKVAELQSEIKRIKNDNKEPYKIIWLK 147 (797)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3444446777888888888888888766555544322 222 234556677788888888888888888888888
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHhh---ccHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCccchHHHHHHH
Q 001602 115 NKQLHQLWYRSVTLRHIISLLDQIEGIA---KVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSEL 189 (1046)
Q Consensus 115 ~~~L~~L~~~s~~~~~~i~~L~~ie~l~---~vP~~ie~~i~~k~y~~A~~lL~~~~~~l~~~~L~~i~aL~~lr~~L 189 (1046)
.-.|.+|-...-..+...++|+-=..|+ +-|. +....|.+.+.+=..+++..+|.+|.-+..=+-++
T Consensus 148 t~vl~rLhva~~lLrrsgr~l~LskkL~~l~~~~~--------~d~traaq~lneLd~l~e~~dlsgIdvId~el~fv 217 (797)
T KOG2211|consen 148 TMVLTRLHVAENLLRRSGRALELSKKLASLNSSMV--------VDATRAAQTLNELDSLLEVLDLSGIDVIDKELMFV 217 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--------HhHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 8888888877777777777776555555 2222 23678888899999999998999987665444333
No 28
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=56.94 E-value=1.4e+02 Score=35.11 Aligned_cols=142 Identities=14% Similarity=0.137 Sum_probs=77.8
Q ss_pred cchHHHHHHHHHhHhhcCCCCCCcHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHH
Q 001602 11 PEKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLF 90 (1046)
Q Consensus 11 ~~~~~~~~~l~~i~~~w~~~~f~~~~~~l~~L~s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i 90 (1046)
..+..+.+.+..+-.......-+.+--.++.++ .-.++.+.+......+-+.+..++.++.+ ...+.+-..+...+
T Consensus 227 vsld~L~~~ltrL~~~~~~~~v~~l~~~~~~~a--~~~~~~~~ll~~l~~l~~~l~~ll~~l~~--~~lL~Nle~lt~~L 302 (370)
T PLN03094 227 VSLDELVGICTRLAREMEAIGVAKMYALAERAA--DLMEEARPLLLKIQAMAEDLQPLLSEVRD--SGLLKEVEKLTRVA 302 (370)
T ss_pred CCHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH--HHHhhcHHHHHHHHHHHHHHHHHHhhcch--hhHHHHHHHHHHHH
Confidence 667777777777766666544444333333321 11122222343444555555555555544 35555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhhHHHHHHHHHH-HHHHhhccHHHHHHHHhccCHHHHHHHHHHHHH
Q 001602 91 SESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLD-QIEGIAKVPARIEKLIAGKQYYAAVQLHAQSAL 169 (1046)
Q Consensus 91 ~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~-~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~ 169 (1046)
.++-++|.++.++|..-... ...+..+..+. .++.+.++=..|+.++.+..+..+.+-|++++.
T Consensus 303 A~as~~l~~l~~~l~~p~~~---------------~~L~qtl~sl~~t~~ni~~vs~dv~~ft~D~~~r~~Lr~li~~Ls 367 (370)
T PLN03094 303 AEASEDLRRLNSSILTPENT---------------ELLRQSIYTLTKTLKHIESISSDISGFTGDEATRRNLKQLIQSLS 367 (370)
T ss_pred HHHHHHHHHHHHhhcCHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 55555555555533321111 11122222222 345666777899999999999999999999886
Q ss_pred Hh
Q 001602 170 ML 171 (1046)
Q Consensus 170 ~l 171 (1046)
.|
T Consensus 368 ~l 369 (370)
T PLN03094 368 RL 369 (370)
T ss_pred cc
Confidence 43
No 29
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=56.24 E-value=1.2e+02 Score=38.26 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 001602 182 LQDVRSELTKLRGVLFYKVLEDLHAHLYNRG 212 (1046)
Q Consensus 182 L~~lr~~L~~q~~~L~d~lieEL~~hLYlKs 212 (1046)
|..++.++......-.+.-+.+.-+.|+-|.
T Consensus 492 l~~~~~~l~~~~~~~le~~~~~~f~~l~~k~ 522 (650)
T TIGR03185 492 LKEFREKLLERKLQQLEEEITKSFKKLMRKH 522 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5567777777766666666666767777764
No 30
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=55.68 E-value=2.9e+02 Score=33.88 Aligned_cols=72 Identities=22% Similarity=0.371 Sum_probs=47.8
Q ss_pred HHHhhccHHHHHHHHhcc---CHHH-HHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001602 138 IEGIAKVPARIEKLIAGK---QYYA-AVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLY 209 (1046)
Q Consensus 138 ie~l~~vP~~ie~~i~~k---~y~~-A~~lL~~~~~~l~~~~L~~i~aL~~lr~~L~~q~~~L~d~lieEL~~hLY 209 (1046)
|+++.--|+-|...+.+. +|.. +.+++.+-..........+..|.+|++..|+..+..-.+.+-+=|-..||
T Consensus 79 i~~i~ipP~lI~~I~~~~v~e~~~~~~~~~~~k~~~~~~~~~~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI~ 154 (508)
T PF04129_consen 79 IDDIVIPPDLIRSICEGPVNEQYIEELLELLKKKIFFSKDQSFKDSKAIKDVKPELEKLKNKAVERIRDFLLKKIK 154 (508)
T ss_pred HHHHcCCHHHHHhHhcCCCCHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566665555555555432 3444 46777766666666678999999999999987776666555555555554
No 31
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=54.65 E-value=6.7e+02 Score=33.56 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=47.8
Q ss_pred HHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhhHH
Q 001602 70 HAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTL 128 (1046)
Q Consensus 70 ~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~ 128 (1046)
.+-.++.+.+=..-..+...|..+|+.+.++.+....+...+......|.+||..-.+.
T Consensus 1573 ~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~l 1631 (1758)
T KOG0994|consen 1573 EEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEEL 1631 (1758)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666667778888889999999999999999999999999999999765544
No 32
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=54.27 E-value=39 Score=27.59 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHhC-CCCCCHHHHHHHh
Q 001602 985 RLDRVRTYYELLNMPFEALLAFVTEH-ENLFTTTEYASLL 1023 (1046)
Q Consensus 985 ~l~ra~~yyeL~~~~~~~ll~~i~e~-~~~Fs~~Ey~~ll 1023 (1046)
.+.+|+.|-+...++.++|.+.+... |-.||.+|-...+
T Consensus 6 Al~~Ak~Y~~~~~~Sk~~l~~QL~se~ge~Ft~e~A~YAv 45 (48)
T PF07553_consen 6 ALKKAKSYLKTMHMSKQGLYDQLTSEYGEGFTEEEAQYAV 45 (48)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHhhcccCCCHHHHHHHH
Confidence 78999999999999999999999874 7899999977655
No 33
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=51.97 E-value=2.8e+02 Score=34.53 Aligned_cols=90 Identities=19% Similarity=0.242 Sum_probs=58.9
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhhHHHHHHHHHH-HHHHhhccHHHHHH
Q 001602 72 YHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLD-QIEGIAKVPARIEK 150 (1046)
Q Consensus 72 h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~-~ie~l~~vP~~ie~ 150 (1046)
--+....-......++..=...+..|..+|+....+|+.|..++... ...+..|+ +++.+-.--++.+.
T Consensus 113 ~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~----------G~a~~~Le~~L~~ie~~F~~f~~ 182 (560)
T PF06160_consen 113 IEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSY----------GPAIEELEKQLENIEEEFSEFEE 182 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----------chhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555666666777777777777777776666555543 33333332 35666666789999
Q ss_pred HHhccCHHHHHHHHHHHHHHh
Q 001602 151 LIAGKQYYAAVQLHAQSALML 171 (1046)
Q Consensus 151 ~i~~k~y~~A~~lL~~~~~~l 171 (1046)
++.++.|.+|.++|...-.-+
T Consensus 183 lt~~GD~~~A~eil~~l~~~~ 203 (560)
T PF06160_consen 183 LTENGDYLEAREILEKLKEET 203 (560)
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999987665544
No 34
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=51.79 E-value=5.2e+02 Score=31.62 Aligned_cols=144 Identities=15% Similarity=0.305 Sum_probs=84.8
Q ss_pred CCCCcchHHHHH---------HHHHhHhhcCC---CCCCcHHHHHHhhccCChh---------HHHHHHHHHHHHHHHHH
Q 001602 7 LPISPEKAYLRE---------ELARIEVSWVA---PRFDSLPHVVHILTSKDRE---------GEVQILKDQNDIIEEVV 65 (1046)
Q Consensus 7 ~~~~~~~~~~~~---------~l~~i~~~w~~---~~f~~~~~~l~~L~s~~~~---------~~~~~l~~~~~~~~~~L 65 (1046)
+|++-+.++++. .......+|.+ ..|-+++-.|= .-++.. +.....+.+..-++..+
T Consensus 43 lPv~dEi~kVK~L~L~GQTe~~Fe~Wrq~W~di~~~~fadvEE~lf--eAE~~~dkfrF~kA~~~i~~ie~~l~~iE~~i 120 (570)
T COG4477 43 LPVNDEISKVKKLHLTGQTETKFEEWRQKWDDIVTNSFADVEEHLF--EAEALADKFRFNKAKHEIDDIEQQLTLIEEDI 120 (570)
T ss_pred CCchhHHHHHhcCcccCccHHHHHHHHHHHHHHHHhhcccHHHHHH--HHHHhhhhhhhHHhhhhHhhHHHHHHHHHHHH
Confidence 677777777753 45666667766 34444443321 222222 22333333334444444
Q ss_pred HHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhhHHHHHHHHHHHHHHhhccH
Q 001602 66 DEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVP 145 (1046)
Q Consensus 66 ~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP 145 (1046)
+.++ ++.|.-+.++.+=...|..+.+.-.++|..+.+=...++..-++|.+ +++.+-.--
T Consensus 121 ~~il----~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk----------------~Le~i~~~l 180 (570)
T COG4477 121 EQIL----EDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEK----------------KLENIEEEL 180 (570)
T ss_pred HHHH----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH----------------HHHHHHHHH
Confidence 4433 45666667777666666666666666666665555555444443322 455555556
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHhc
Q 001602 146 ARIEKLIAGKQYYAAVQLHAQSALMLE 172 (1046)
Q Consensus 146 ~~ie~~i~~k~y~~A~~lL~~~~~~l~ 172 (1046)
.+.+.+-+++.|.+|.++|.++-..+.
T Consensus 181 ~qf~~lt~~Gd~ieA~evl~~~ee~~~ 207 (570)
T COG4477 181 SQFVELTSSGDYIEAREVLEEAEEHMI 207 (570)
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHH
Confidence 788889999999999999988876553
No 35
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=51.44 E-value=85 Score=33.31 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=17.1
Q ss_pred CCCCCCCCCCcchHHHHHHHHHhH
Q 001602 1 MDIFDGLPISPEKAYLREELARIE 24 (1046)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~i~ 24 (1046)
|.+|-+.||.||++-+-+.-..++
T Consensus 18 mevfk~vPQ~PHF~pL~~~~e~~R 41 (190)
T PF05266_consen 18 MEVFKKVPQSPHFSPLQEFKEELR 41 (190)
T ss_pred HHHHHcCCCCCCChhhhcCcHHhh
Confidence 356888999999988765544443
No 36
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=49.30 E-value=99 Score=38.28 Aligned_cols=119 Identities=13% Similarity=0.208 Sum_probs=82.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhccCCchhhhhh
Q 001602 850 SRDLASFADEYRKLAIDCLKVLRVEMQLETIFHLQEMTSRDYLEDQDAEEPDDFIISLTSQITRRDEEMAPFIAEEKRNY 929 (1046)
Q Consensus 850 ~~~f~~l~~~f~~La~~~Ll~LrlEvR~~~iy~L~~~~~~~y~~~~~~~epDp~I~~Ln~dL~~~de~ls~~L~~~k~~f 929 (1046)
...|+.+...|.+++..|.-.|--+|=..+=-++..++...|..+ ..+..+-..+..+-.-+..+|.+.-++.
T Consensus 352 ~~~~~~~~~~~~~l~~~~~~~L~~~if~Dl~p~~~~Lft~~W~~~-------~~~~~I~~Ti~dY~~d~~~~l~~~~~~~ 424 (566)
T PF06046_consen 352 SSDLEELMDGFDDLAKECCQYLLEEIFNDLKPHFKKLFTKKWYSG-------EAVDTICATIEDYLQDFQHYLRPPYFQE 424 (566)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHHHHHHHCTHHHHCTTTSGGGCTS--------HHHHHHHHHHHHHHHHCCCS-HHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCcCcCcCc-------chHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 456889999999999999988887776654445566777778755 5566666667777777888787776666
Q ss_pred hhccHHHH-HHHHHHHhch-hh----hhhcHHhHHHHHHhHHHHHHHhhcCC
Q 001602 930 IFGGICGI-AANASIKALA-DM----KNINLFGVQQICRNSIALEQALAAIP 975 (1046)
Q Consensus 930 IF~GL~~l-i~~~lI~~~~-~i----~~iN~~Gvkkm~rNI~~LQQ~L~nI~ 975 (1046)
+...+-.- +-.++-.-.+ .+ +.....+..||.+++-.|++-+....
T Consensus 425 l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D~~~l~~~F~~~~ 476 (566)
T PF06046_consen 425 LIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRDAEQLKSFFSKLG 476 (566)
T ss_dssp HHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 65554433 3333333222 12 34577899999999999999999887
No 37
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=48.96 E-value=1.2e+02 Score=37.71 Aligned_cols=103 Identities=13% Similarity=0.081 Sum_probs=60.9
Q ss_pred HHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 001602 63 EVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIA 142 (1046)
Q Consensus 63 ~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~ 142 (1046)
..|+..|-+-|.+.=.+--+-..+.+.-..--+.|+.++.+...-...=-.+++-+.+++-....|. -+--+|..|.
T Consensus 38 EELRqmVGeRYRDLleAADtI~hM~sla~~L~~~I~~t~~ncrsL~a~svA~tp~raeqnp~~e~~Y---g~aaqVKyLv 114 (863)
T KOG2033|consen 38 EELRQMVGERYRDLLEAADTIRHMCSLADKLASDIANTRVNCRSLHANSVAKTPGRAEQNPAGEHLY---GTAAQVKYLV 114 (863)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCcchhhcCchhhHHH---HHHHHHHHHH
Confidence 4456666666666544433333333322223333444444333322222344666776663333333 3456899999
Q ss_pred ccHHHHHHHHhccCHHHHHHHHHHHH
Q 001602 143 KVPARIEKLIAGKQYYAAVQLHAQSA 168 (1046)
Q Consensus 143 ~vP~~ie~~i~~k~y~~A~~lL~~~~ 168 (1046)
..|++|=..+.+.+|++|+.+...+-
T Consensus 115 ~~PE~IWg~lD~s~fl~At~ly~~~~ 140 (863)
T KOG2033|consen 115 SSPELIWGHLDSSEFLDATVLYCMVE 140 (863)
T ss_pred hCHHHhhccccccchHHHHHHHHHHH
Confidence 99999999999999999999876554
No 38
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=48.76 E-value=1.4e+02 Score=34.35 Aligned_cols=160 Identities=17% Similarity=0.191 Sum_probs=0.0
Q ss_pred HhhcCCCCCCcHHHHHHhh--ccCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHH-HHHHHHHHH
Q 001602 24 EVSWVAPRFDSLPHVVHIL--TSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFS-ESAESIKEL 100 (1046)
Q Consensus 24 ~~~w~~~~f~~~~~~l~~L--~s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~-~sq~~i~~l 100 (1046)
+..|..=+-.-+.-....| ...+...++..+.+..+.++..+..++..| +....-+..-..+...+. .-++.+..+
T Consensus 136 K~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~-~~L~~e~~~Lk~~~~e~~~~D~~eL~~l 214 (325)
T PF08317_consen 136 KKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERK-AELEEELENLKQLVEEIESCDQEELEAL 214 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhcCHHHHHHH
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHhhHHHHHHHHHHH-HHHhhccHHHHHHHHhccC--HHHHHHHHHHHHHHhcccCCC
Q 001602 101 KVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQ-IEGIAKVPARIEKLIAGKQ--YYAAVQLHAQSALMLEREGLQ 177 (1046)
Q Consensus 101 k~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~-ie~l~~vP~~ie~~i~~k~--y~~A~~lL~~~~~~l~~~~L~ 177 (1046)
|+.|.+.+..|..++.+|.+|-.+-...+.-++-+.+ +.+++.-=...+....+.+ =..-+.-|...+..+.+-.-|
T Consensus 215 r~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~gw 294 (325)
T PF08317_consen 215 RQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLTGW 294 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHCc
Q ss_pred CccchHH
Q 001602 178 TVGALQD 184 (1046)
Q Consensus 178 ~i~aL~~ 184 (1046)
.+-.+.+
T Consensus 295 ~~~~~~~ 301 (325)
T PF08317_consen 295 KIVSISG 301 (325)
T ss_pred EEEEEeC
No 39
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=47.80 E-value=6.5e+02 Score=32.23 Aligned_cols=135 Identities=11% Similarity=0.126 Sum_probs=104.5
Q ss_pred cCCCCCCCCCCC----CCChHHHHHHHHHHHHHHHhccCCchhhhhhhhccHHHHHHHHHHHhchhhhhhcHHhHHHHHH
Q 001602 887 TSRDYLEDQDAE----EPDDFIISLTSQITRRDEEMAPFIAEEKRNYIFGGICGIAANASIKALADMKNINLFGVQQICR 962 (1046)
Q Consensus 887 ~~~~y~~~~~~~----epDp~I~~Ln~dL~~~de~ls~~L~~~k~~fIF~GL~~li~~~lI~~~~~i~~iN~~Gvkkm~r 962 (1046)
.+.+|.|..+.. .|.|.....-.-|...-+.+..+|...=..-...=||.=+-.+++...+. -.+|..|.-.+.+
T Consensus 559 kk~Df~p~~~~~~~~~~~T~ac~~vv~~L~~~~~~~~~~l~~~nl~~f~~elg~~l~~~l~~h~kk-~~vs~~Gg~~l~~ 637 (710)
T PF07393_consen 559 KKTDFKPKEDDLSLDQQPTPACQEVVEFLERHCSLLKGSLDGSNLDVFLQELGERLHRLLLKHLKK-FTVSSTGGLQLIK 637 (710)
T ss_pred CCCCCCCCccccccccCCCHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHh-CccCchhHHHHHH
Confidence 346798854332 68899999999999999999999987655555555666666666544322 2679999999999
Q ss_pred hHHHHHHHhhcCCCCChHHHHHhHHHHHHHHHhcCCCHHHHHHHHHhCCC-CCCHHHHHHHhhc
Q 001602 963 NSIALEQALAAIPSIDSEAVRRRLDRVRTYYELLNMPFEALLAFVTEHEN-LFTTTEYASLLKV 1025 (1046)
Q Consensus 963 NI~~LQQ~L~nI~~~~~~~v~~~l~ra~~yyeL~~~~~~~ll~~i~e~~~-~Fs~~Ey~~ll~L 1025 (1046)
.|...|..++....+ .|..-|+.-+.--.||..+|+.+-..+.+... .|+.+|.+..+++
T Consensus 638 Dl~~Y~~~~~~~~~~---~v~~~F~~L~~l~nl~~v~~~~l~~~~~~~~~~~~~~~~i~~fi~~ 698 (710)
T PF07393_consen 638 DLNEYQDFIRSWGIP---SVDEKFEALKELGNLFIVDPENLKELCREGQLGRFSPEEIYEFIQR 698 (710)
T ss_pred HHHHHHHHHHHcCCc---hHHHHHHHHHHHHhheeecHHHHHHHHhhccccCCCHHHHHHHHHH
Confidence 999999999998632 24457888888889999999999988888643 6999999988865
No 40
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=46.62 E-value=6.7e+02 Score=31.17 Aligned_cols=121 Identities=15% Similarity=0.200 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhhHHHHHHHHH--------HHHHHhhccHHHHHHHHh----ccC
Q 001602 89 LFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLL--------DQIEGIAKVPARIEKLIA----GKQ 156 (1046)
Q Consensus 89 ~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L--------~~ie~l~~vP~~ie~~i~----~k~ 156 (1046)
.|.+|..-+.+|-..|..=...|+.-..+++.|-.+|..-.--++-. .-||.+.--|+-|+.-+. +..
T Consensus 83 qi~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~Nrq~v~s~Ls~fVdd~iVpp~lI~~I~~g~vne~~ 162 (683)
T KOG1961|consen 83 QIRACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLRLENRQAVESKLSQFVDDLIVPPELIKTIVDGDVNEPE 162 (683)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHhccccCCHHHHHHHHcCCCCchH
Confidence 33444444444444444444444444444544444444332222211 125555555555555544 348
Q ss_pred HHHHHHHHHHHHHHhc-ccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001602 157 YYAAVQLHAQSALMLE-REGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLY 209 (1046)
Q Consensus 157 y~~A~~lL~~~~~~l~-~~~L~~i~aL~~lr~~L~~q~~~L~d~lieEL~~hLY 209 (1046)
|.+|.+.|..=++..+ ..+..+-.|++|++.-|+..+..-...+-+=|-.-||
T Consensus 163 f~~~LeeL~~Kl~~v~~dq~~k~a~a~~Dv~~lLdkLR~KAi~kir~~IlqkI~ 216 (683)
T KOG1961|consen 163 FLEALEELSHKLKLVELDQSNKDAKALKDVEPLLDKLRLKAIEKIREFILQKIK 216 (683)
T ss_pred HHHHHHHHHHHHHhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 7799999999999999987776655555554444444
No 41
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=45.65 E-value=4.7e+02 Score=29.19 Aligned_cols=104 Identities=14% Similarity=0.239 Sum_probs=64.0
Q ss_pred HHHHHHHHhHhhcCCCCCCcHHHHHHhhc--cCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHH
Q 001602 15 YLREELARIEVSWVAPRFDSLPHVVHILT--SKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSE 92 (1046)
Q Consensus 15 ~~~~~l~~i~~~w~~~~f~~~~~~l~~L~--s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~ 92 (1046)
.+.++++.+..--...+-+.+...+.-+. -.++..++.++. +.++..++ .++.....+...|.+...+.+.+.+
T Consensus 131 ~l~~ll~~~~~ll~~~~~~~l~~~l~~l~~~l~~~~~~l~~~l---~~l~~l~~-~l~~~~~~i~~ll~~l~~l~~~l~~ 206 (291)
T TIGR00996 131 EIDDLLGSLTRLLNGLDPEKLNAILNALAEALAGQGPQLRNLL---DGLAQLTA-ALNARDGDIGALIDNLNRVLDVLAD 206 (291)
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcHHHHHHH---HHHHHHHH-HHHhcchhHHHHHHHHHHHHHHHHh
Confidence 44555555554433332233444444431 122333343433 44443333 3455677888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCchHHHHHH
Q 001602 93 SAESIKELKVDLAEAKRRLGTRNKQLHQLW 122 (1046)
Q Consensus 93 sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~ 122 (1046)
.++.+..+-+++...-..|..++++|.++-
T Consensus 207 ~~~~l~~~v~~l~~~~~~l~~~~~~l~~~l 236 (291)
T TIGR00996 207 RSDQLDRLLDNLATLTAQLADRDDALDDAL 236 (291)
T ss_pred hhHHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 898888888888888888877777776553
No 42
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=45.03 E-value=4.5e+02 Score=28.71 Aligned_cols=121 Identities=19% Similarity=0.259 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHhh
Q 001602 49 GEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYS-QILRLFSESAESIKELKVDLAEAKRRLGT-RNKQLHQLWYRSV 126 (1046)
Q Consensus 49 ~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~-~i~~~i~~sq~~i~~lk~~L~~~k~~L~~-~~~~L~~L~~~s~ 126 (1046)
.-+..+=+..+++-.+-...+..=.+.|...+.+|. .-+..|+..+.++..-|=.+-.||..++. .+++|+.-..+-.
T Consensus 88 ~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~dik~i~k~RKkLe~rRLd~D~~K~r~~k~~eeElr~A~~kFe 167 (223)
T cd07613 88 PALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFD 167 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 444455555566767777777777789999999976 55668899999999999999999999975 4788888866555
Q ss_pred HHHH-----HHHHHHH-HHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHh
Q 001602 127 TLRH-----IISLLDQ-IEGIAKVPARIEKLIAGKQYYAAVQLHAQSALML 171 (1046)
Q Consensus 127 ~~~~-----~i~~L~~-ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~l 171 (1046)
+.++ |..+|+. +|.++++-+-|++-+. -|.+|.++|.+-..-+
T Consensus 168 es~E~a~~~M~n~l~~e~e~~~~L~~fveAQl~--Yh~qa~eiL~~l~~~l 216 (223)
T cd07613 168 ESKEIAESSMFNLLEMDIEQVSQLSALVQAQLE--YHKQATQILQQVTVKL 216 (223)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 5544 5558887 8888877777776654 4555555555444333
No 43
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=44.06 E-value=4.4e+02 Score=28.30 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHH
Q 001602 51 VQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAES 96 (1046)
Q Consensus 51 ~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~ 96 (1046)
...|+...+.+.+.+..+|. |.++...+++.|+.....++.+...
T Consensus 33 ~~~le~~Lk~l~~~~~~l~~-~~~~l~~~~~e~~~~~~~la~~E~~ 77 (236)
T PF09325_consen 33 VDKLEEQLKKLYKSLERLVK-RRQELASALAEFGSSFSQLAKSEEE 77 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcccCC
Confidence 35556666666666666554 4688888999999988888877665
No 44
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=42.82 E-value=3.5e+02 Score=29.02 Aligned_cols=94 Identities=14% Similarity=0.223 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHh-h
Q 001602 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRS-V 126 (1046)
Q Consensus 48 ~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s-~ 126 (1046)
..-+..|-+..+.+...+..........|...+.-|...+.++.+.=.+=..+-..+..+...|..++..+.++-..+ .
T Consensus 81 ~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~ 160 (236)
T PF09325_consen 81 SEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKN 160 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchh
Confidence 455566667777888888888888888899999999999999988877777777888999999999998888887663 2
Q ss_pred HHHHHHHHHHHHHHh
Q 001602 127 TLRHIISLLDQIEGI 141 (1046)
Q Consensus 127 ~~~~~i~~L~~ie~l 141 (1046)
..+.+-+...+|+++
T Consensus 161 ~~~k~~~~~~ei~~~ 175 (236)
T PF09325_consen 161 RQDKVEQAENEIEEA 175 (236)
T ss_pred hhHHHHHHHHHHHHH
Confidence 334444444444433
No 45
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=42.38 E-value=4.9e+02 Score=28.41 Aligned_cols=154 Identities=16% Similarity=0.177 Sum_probs=93.6
Q ss_pred HHHHHHHHHhHhhcCCCCC-CcHHHHHHhhccCC--------hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhH
Q 001602 14 AYLREELARIEVSWVAPRF-DSLPHVVHILTSKD--------REGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYS 84 (1046)
Q Consensus 14 ~~~~~~l~~i~~~w~~~~f-~~~~~~l~~L~s~~--------~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~ 84 (1046)
..+-+.++.|+..++.+.. .|..+.=..|...| .+.-+..+=+...++-.+-...+..=.+.|+..+.++-
T Consensus 44 ~~~~~~~~k~rg~~k~~~~p~~~~~Lg~~M~~~G~~lg~dS~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~l 123 (223)
T cd07614 44 LTMLNTVSKIRGQVKNPGYPQSEGLLGETMIRYGKELGDESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLC 123 (223)
T ss_pred HHHHHHHHHHhccccCCCCCChHhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777776532 22332222232111 23444445555566666666666777788999999996
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-hHHHHHHHHhhHH-----HHHHHHHHH-HHHhhccHHHHHHHHhccC
Q 001602 85 -QILRLFSESAESIKELKVDLAEAKRRLGTRN-KQLHQLWYRSVTL-----RHIISLLDQ-IEGIAKVPARIEKLIAGKQ 156 (1046)
Q Consensus 85 -~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~-~~L~~L~~~s~~~-----~~~i~~L~~-ie~l~~vP~~ie~~i~~k~ 156 (1046)
.-+..|+..+.++..-|=.+-.||+.+..+. ++|+.-..+-.+. ..|..+++. .+.++++-+-|++-+. .
T Consensus 124 e~dik~i~k~RKkLe~rRLdyD~~K~r~~k~~eeelr~a~ekFees~E~a~~~M~~il~~e~e~~~~L~~lveAQl~--Y 201 (223)
T cd07614 124 DKDLKEIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQAMEKFEESKEVAETSMHNLLETDIEQVSQLSALVDAQLD--Y 201 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH--H
Confidence 7788999999999999999999999987643 5665554432222 345555555 5666555555555443 3
Q ss_pred HHHHHHHHHHHHH
Q 001602 157 YYAAVQLHAQSAL 169 (1046)
Q Consensus 157 y~~A~~lL~~~~~ 169 (1046)
|.+|.++|.+-..
T Consensus 202 h~qa~eiL~~l~~ 214 (223)
T cd07614 202 HRQAVQILDELAE 214 (223)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 46
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.69 E-value=4.1e+02 Score=32.44 Aligned_cols=120 Identities=17% Similarity=0.259 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh----HHHHH----HHhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--
Q 001602 48 EGEVQILKDQNDIIEEVVDEVVHAY----HTGFN----KAIQ---NYSQILRLFSESAESIKELKVDLAEAKRRLGTR-- 114 (1046)
Q Consensus 48 ~~~~~~l~~~~~~~~~~L~~~V~~h----~~~Fn----~sI~---sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~-- 114 (1046)
+..+..||+...+++.+++.|-++- .|.|- ..|. +|-+++.+|+--..-+..+++....-......+
T Consensus 300 ~~K~~llEkala~~edaI~~v~D~~~~d~~~~~~t~~~q~i~aYL~Y~~l~~tisR~~~~~~n~~~~~ls~~~~~~~k~r 379 (593)
T KOG2460|consen 300 DQKLSLLEKALARCEDAIQNVRDEIKIDEKQRNSTLNGQIILAYLKYNKLLTTISRNEDAFTNLWNQWLSQQTSDPKKLR 379 (593)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccchHhhhhhhcchHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHhCcccccccC
Confidence 4567889988888888888876532 12221 1222 355566666555444444444444433332222
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHhhcc------HHH----------------HHHHHhccCHHHHHHHHHHHHHHhc
Q 001602 115 NKQLHQLWYRSVTLRHIISLLDQIEGIAKV------PAR----------------IEKLIAGKQYYAAVQLHAQSALMLE 172 (1046)
Q Consensus 115 ~~~L~~L~~~s~~~~~~i~~L~~ie~l~~v------P~~----------------ie~~i~~k~y~~A~~lL~~~~~~l~ 172 (1046)
-.+|.+|+ +-+|+.|..|-+|--+ -.+ -..|.+.++|-+|+-|-+++++.++
T Consensus 380 pqdl~RLY------d~iiknl~e~~elPG~~~D~~l~sqle~~~~~fkafRC~~iA~sY~a~~K~~EAlALy~Ra~sylq 453 (593)
T KOG2460|consen 380 PQDLERLY------DSIIKNLSEIMELPGLESDKELQSQLELKKLYFKAFRCFYIAVSYQAKKKYSEALALYVRAYSYLQ 453 (593)
T ss_pred HHHHHHHH------HHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443 4444444433332111 112 2467889999999999999999886
Q ss_pred c
Q 001602 173 R 173 (1046)
Q Consensus 173 ~ 173 (1046)
.
T Consensus 454 e 454 (593)
T KOG2460|consen 454 E 454 (593)
T ss_pred H
Confidence 5
No 47
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=41.65 E-value=7e+02 Score=31.10 Aligned_cols=107 Identities=12% Similarity=0.122 Sum_probs=66.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhhHHHHHHHHHHHHHHhhccHHHHHHHHh
Q 001602 74 TGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIA 153 (1046)
Q Consensus 74 ~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~ 153 (1046)
+.++..-..|+.+...+.+..+++..++..-.+-+..|..-+.+-.+.-..-.+++..+.-+...=+-..+|.--+.++.
T Consensus 369 ~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~ 448 (569)
T PRK04778 369 ERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLE 448 (569)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHH
Confidence 55666666688888888888888888777777777777766655555555555555555544443334444544444433
Q ss_pred ccCHHHHHHHHHHHHHHhcccCCCCccchH
Q 001602 154 GKQYYAAVQLHAQSALMLEREGLQTVGALQ 183 (1046)
Q Consensus 154 ~k~y~~A~~lL~~~~~~l~~~~L~~i~aL~ 183 (1046)
.|-.+.+-+.+-...++. .=.++.|+.
T Consensus 449 --~~~~~~~~i~~l~~~L~~-g~VNm~ai~ 475 (569)
T PRK04778 449 --MFFEVSDEIEALAEELEE-KPINMEAVN 475 (569)
T ss_pred --HHHHHHHHHHHHHHHhcc-CCCCHHHHH
Confidence 344566666666666666 556666665
No 48
>PF12854 PPR_1: PPR repeat
Probab=41.51 E-value=43 Score=24.84 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHH
Q 001602 315 HVKYLQTMVECLCILGKVAAAGAIIC 340 (1046)
Q Consensus 315 sf~yi~~lvesL~~LgkL~~Al~~i~ 340 (1046)
.+.| .+||.++.+-|++++|.+++.
T Consensus 7 ~~ty-~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 7 VVTY-NTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HhHH-HHHHHHHHHCCCHHHHHHHHH
Confidence 3334 789999999999999998864
No 49
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=41.20 E-value=5e+02 Score=28.14 Aligned_cols=137 Identities=15% Similarity=0.191 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhhH-
Q 001602 49 GEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT- 127 (1046)
Q Consensus 49 ~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~- 127 (1046)
..+..|+...+.+-++++.+|. |+.+...+++.|+.....++.+-. ...|..+=..++..-+.++++..+...
T Consensus 19 ~~i~~Le~~Lk~l~~~~e~lv~-~r~ela~~~~~f~~s~~~L~~~E~-----~~~Ls~al~~la~~~~ki~~~~~~qa~~ 92 (224)
T cd07623 19 QQIENLDQQLRKLHASVESLVN-HRKELALNTGSFAKSAAMLSNCEE-----HTSLSRALSQLAEVEEKIEQLHGEQADT 92 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccc-----chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777788888877775 558999999999999999998774 245666667777777777777766332
Q ss_pred -HHHHHHHHHH-HHHhhccHHHHHHHHhcc-CHHHHHHHHHHHHHHhcccCCCC-ccchHHHHHHHHH
Q 001602 128 -LRHIISLLDQ-IEGIAKVPARIEKLIAGK-QYYAAVQLHAQSALMLEREGLQT-VGALQDVRSELTK 191 (1046)
Q Consensus 128 -~~~~i~~L~~-ie~l~~vP~~ie~~i~~k-~y~~A~~lL~~~~~~l~~~~L~~-i~aL~~lr~~L~~ 191 (1046)
...+.+.|+. +.-+.+||+-+.....-- .|..|..-|...-..+.+....+ ..-+..+..++..
T Consensus 93 d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~ 160 (224)
T cd07623 93 DFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKE 160 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Confidence 2333444433 444556677666655433 34444444544444444433322 1124444555443
No 50
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=41.10 E-value=5.7e+02 Score=30.49 Aligned_cols=147 Identities=10% Similarity=0.103 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH----H--HHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHH
Q 001602 48 EGEVQILKDQNDIIEEVVDEV----V--HAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQL 121 (1046)
Q Consensus 48 ~~~~~~l~~~~~~~~~~L~~~----V--~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L 121 (1046)
+.-++.|-..|+.|..+++.. . .++.+-|.--..-=..+=.-+.+-++++..|......+++.|....+.+..+
T Consensus 209 a~lL~sLt~HfDqC~~a~~~~eg~~~~~~e~~e~l~Vl~~Da~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~ 288 (412)
T PF04108_consen 209 ASLLESLTNHFDQCVTAVRHTEGEPMSEEERQEMLEVLENDAQELPDVVKELQERLDEMENNEERTKKLLQSQRDHIREL 288 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667788888888733 2 3344444444444455555677788888888888888888888777777766
Q ss_pred HHHhhHHHHHHHHHHHHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHH
Q 001602 122 WYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVL 201 (1046)
Q Consensus 122 ~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~l~~~~L~~i~aL~~lr~~L~~q~~~L~d~li 201 (1046)
+..... +++.|+.+.+ ++-.+ ..+..-+.+-+.....+-...+..+.+|+........ -|+.++
T Consensus 289 ~~~~~~---~~~~l~~~~~------~l~~y------l~~~~~~~~~~~~~~~~i~~~~~~l~~L~~~Y~~F~~-aY~~LL 352 (412)
T PF04108_consen 289 YNALSE---ALEELRKFGE------RLPSY------LAAFHDFEERWEEEKESIQAYIDELEQLCEFYEGFLS-AYDSLL 352 (412)
T ss_pred HHHHHH---HHHHHHHHHH------HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 554332 2222222222 23322 2333333333333322344456677788777777765 677788
Q ss_pred HHHHHhhhc
Q 001602 202 EDLHAHLYN 210 (1046)
Q Consensus 202 eEL~~hLYl 210 (1046)
-|++.-=+.
T Consensus 353 ~Ev~RRr~~ 361 (412)
T PF04108_consen 353 LEVERRRAV 361 (412)
T ss_pred HHHHHHHHH
Confidence 888876654
No 51
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=40.23 E-value=3e+02 Score=34.34 Aligned_cols=140 Identities=12% Similarity=0.202 Sum_probs=76.5
Q ss_pred HHHHHhHhhcCC---CCCCcHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHH
Q 001602 18 EELARIEVSWVA---PRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESA 94 (1046)
Q Consensus 18 ~~l~~i~~~w~~---~~f~~~~~~l~~L~s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq 94 (1046)
+.++..+.+|.+ ..|..++..+--. ....+.-+|.+....+ ..++..++.--+...........++..=.+.+
T Consensus 64 ~~f~~w~~~~~~i~~~~~~~ie~~l~~a---e~~~~~~~f~~a~~~~-~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr 139 (569)
T PRK04778 64 EKFEEWRQKWDEIVTNSLPDIEEQLFEA---EELNDKFRFRKAKHEI-NEIESLLDLIEEDIEQILEELQELLESEEKNR 139 (569)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHH---HHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777776 3444444433322 1111111222221111 12223333333333344444555555556667
Q ss_pred HHHHHHHHHHHHHHHHhccCchHHHHHHHHhhHHHHHHHHHH-HHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHh
Q 001602 95 ESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLD-QIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALML 171 (1046)
Q Consensus 95 ~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~-~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~l 171 (1046)
..|..+|..-...|+.|..++..+. ..+..|+ +++.+-.--++.+.+..++.|.+|.+.|.+.-.-+
T Consensus 140 ~~v~~l~~~y~~~rk~ll~~~~~~G----------~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~ 207 (569)
T PRK04778 140 EEVEQLKDLYRELRKSLLANRFSFG----------PALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEEL 207 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccc----------chHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 7777777777777766666555433 3333332 35555566779999999999999999887655443
No 52
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=40.05 E-value=5.1e+02 Score=27.90 Aligned_cols=79 Identities=13% Similarity=0.135 Sum_probs=60.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhhHH---HHHHHHHHHHHHhhccHHHHHH
Q 001602 74 TGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTL---RHIISLLDQIEGIAKVPARIEK 150 (1046)
Q Consensus 74 ~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~---~~~i~~L~~ie~l~~vP~~ie~ 150 (1046)
+-+++-++.+-.....+.+.--++...+..|..++..|+..+..+.+--..+..+ ..+-....+++.|+.+|+.+++
T Consensus 24 ~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et 103 (204)
T COG5491 24 QVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFET 103 (204)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666777777777766666999999999999999999877776555555444 4455677889999999999998
Q ss_pred HH
Q 001602 151 LI 152 (1046)
Q Consensus 151 ~i 152 (1046)
..
T Consensus 104 ~~ 105 (204)
T COG5491 104 QF 105 (204)
T ss_pred HH
Confidence 76
No 53
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=38.97 E-value=2.7e+02 Score=26.52 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccCchHHHHHHHHhhHHHHHHHHH-----H-----HHHHhhccHHHH
Q 001602 82 NYSQILRLFSESAESIKELK---VDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLL-----D-----QIEGIAKVPARI 148 (1046)
Q Consensus 82 sy~~i~~~i~~sq~~i~~lk---~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L-----~-----~ie~l~~vP~~i 148 (1046)
.|++++....++|.++..+- ..+.-++.-.+-.+.++-.+-.+...|..|-++. . .-+++++..++|
T Consensus 4 af~~lQ~K~~dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~a~~s~leak~k~see~I 83 (114)
T KOG3501|consen 4 AFSQLQEKAVDTQQQLRTIMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKAAVRSHLEAKMKSSEEKI 83 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHHH
Confidence 47888888888998888665 4455666666667777777777777776665432 2 235778888888
Q ss_pred HHHHhccCHHH
Q 001602 149 EKLIAGKQYYA 159 (1046)
Q Consensus 149 e~~i~~k~y~~ 159 (1046)
+++=.+|.|++
T Consensus 84 eaLqkkK~YlE 94 (114)
T KOG3501|consen 84 EALQKKKTYLE 94 (114)
T ss_pred HHHHHHHHHHH
Confidence 88888888875
No 54
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=38.93 E-value=7.3e+02 Score=30.90 Aligned_cols=117 Identities=14% Similarity=0.184 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhhHHHHH
Q 001602 52 QILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHI 131 (1046)
Q Consensus 52 ~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~ 131 (1046)
..+.+..+.+++....+ -+.++..-..|+.|...+.+..+++..+.+...+.+..|..-+.+=++-...-..++..
T Consensus 347 ~~l~~~l~~l~~~~~~~----~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~ 422 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDL----EERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQK 422 (560)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433333 35677777888988888888888888888888888777776666666665555555555
Q ss_pred HHHHHHHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHhccc
Q 001602 132 ISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLERE 174 (1046)
Q Consensus 132 i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~l~~~ 174 (1046)
+.-...-=+=..+|..=+.++. .|..|.+-+.+-...++..
T Consensus 423 l~~ikR~lek~nLPGlp~~y~~--~~~~~~~~i~~l~~~L~~~ 463 (560)
T PF06160_consen 423 LREIKRRLEKSNLPGLPEDYLD--YFFDVSDEIEELSDELNQV 463 (560)
T ss_pred HHHHHHHHHHcCCCCCCHHHHH--HHHHHHHHHHHHHHHHhcC
Confidence 5444432222334444444444 5777888888888888773
No 55
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.75 E-value=8.2e+02 Score=31.12 Aligned_cols=174 Identities=12% Similarity=0.180 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhccCCchhhhh
Q 001602 853 LASFADEYRKLAID----CLKVLRVEMQLETIFHLQEMTSRDYLEDQDAEEPDDFIISLTSQITRRDEEMAPFIAEEKRN 928 (1046)
Q Consensus 853 f~~l~~~f~~La~~----~Ll~LrlEvR~~~iy~L~~~~~~~y~~~~~~~epDp~I~~Ln~dL~~~de~ls~~L~~~k~~ 928 (1046)
+..++..|.+++.. ++--+++|++++ +..+++..|... . -.+--|..|---+.-+-+.|..+ ..+
T Consensus 467 ~~~~l~~~~~i~~~~~~~l~e~~~~d~~~~----~~~lf~~~W~~g-~--~~~~Iv~T~~dy~~D~~~~~~~~----f~~ 535 (667)
T KOG2286|consen 467 LKGLLDGFIEIAKHGVSGLLEEIFLDLQPL----LNKLFTKEWCAG-S--VTENIVATLDDYLPDFKELMGEY----FVR 535 (667)
T ss_pred hHHHhHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHhhhhhhch-h--hHHHHHHHHHHHHHHHHHHhhhH----HHH
Confidence 44555555555543 333457777765 567888889865 3 23456666666666666666644 677
Q ss_pred hhhccHHHHHHHHHHHhchhhhhhcHHhHHHHHHhHHHHHHHhhcCCCCChHHHHHhHHHHHHHHHhcCCCHHHHH---H
Q 001602 929 YIFGGICGIAANASIKALADMKNINLFGVQQICRNSIALEQALAAIPSIDSEAVRRRLDRVRTYYELLNMPFEALL---A 1005 (1046)
Q Consensus 929 fIF~GL~~li~~~lI~~~~~i~~iN~~Gvkkm~rNI~~LQQ~L~nI~~~~~~~v~~~l~ra~~yyeL~~~~~~~ll---~ 1005 (1046)
||=+-..+++=..+.+-++.=-.++ +++.+|.++.-.+++.++-+.+ +-+..-.-+.-.+.++.+ .+|+.+. .
T Consensus 536 fi~e~~~~~v~~Yl~~l~~kr~~~~-~~~~~i~~d~~~~~~~f~~~~~-~~~~~~~~~~~l~el~~~--~d~d~~~~~~~ 611 (667)
T KOG2286|consen 536 FIEEASLELVIEYLRALSKKRASIQ-ELIEKIKSDAETLYHFFRKYGS-DVDTLISTISTLAELISL--QDPDLIKLEVS 611 (667)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHhhHHHHHHHHHHhCc-chhhhhhhhHHHHHHHhc--CChHHHHHHHH
Confidence 8877777777666665554333466 9999999999999999999885 211111112222333322 2555543 3
Q ss_pred HHHhCCCCCCHHHHHHHhhcccCCCCCchhHHHhHHhhh
Q 001602 1006 FVTEHENLFTTTEYASLLKVNVPGREIPSDALDRVSEIL 1044 (1046)
Q Consensus 1006 ~i~e~~~~Fs~~Ey~~ll~L~~~~~~~~~~~~~~~~~i~ 1044 (1046)
.+.+.-+-+..+-..++|.+- ...+.+-+|+|-+++
T Consensus 612 ~l~~~YpD~~~~~l~~il~~R---~dls~~~~k~i~~~~ 647 (667)
T KOG2286|consen 612 TLLECYPDIPKDHLEAILKIR---GDLSRSEKKKIVDIL 647 (667)
T ss_pred HHHHHCCCCcHHHHHHHHHHh---cCCCHHHHHHHHHHH
Confidence 334444555555555555432 222444455555443
No 56
>PTZ00464 SNF-7-like protein; Provisional
Probab=37.76 E-value=4.1e+02 Score=28.75 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001602 131 IISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHL 208 (1046)
Q Consensus 131 ~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~l~~~~L~~i~aL~~lr~~L~~q~~~L~d~lieEL~~hL 208 (1046)
+-++..+...|-++-..||..-.+.....|...=..+++.+++ .+ +|.-+.+|..++..+-. ..+|+++.|
T Consensus 77 l~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k-~i-~id~Vd~l~Dei~E~~e-----~~~EI~e~L 147 (211)
T PTZ00464 77 QDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFK-KL-NVDKVEDLQDELADLYE-----DTQEIQEIM 147 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 3345556666666777788888888888888888899999988 66 78888887777765543 245555544
No 57
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=37.58 E-value=5.4e+02 Score=28.58 Aligned_cols=82 Identities=21% Similarity=0.356 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhhHH
Q 001602 49 GEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTL 128 (1046)
Q Consensus 49 ~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~ 128 (1046)
.++.++....+.+...++.++. .+++............+...+.++..+|..+...+..+...+..+.++-..-...
T Consensus 27 ~~l~~~~~~~~~l~~~i~~~l~---~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~ 103 (302)
T PF10186_consen 27 SELQQLKEENEELRRRIEEILE---SDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQR 103 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555544 1222266677778888888899999999999999988888888888777766666
Q ss_pred HHHHH
Q 001602 129 RHIIS 133 (1046)
Q Consensus 129 ~~~i~ 133 (1046)
+..+.
T Consensus 104 ~~~l~ 108 (302)
T PF10186_consen 104 RSRLS 108 (302)
T ss_pred HHHHH
Confidence 66555
No 58
>PRK10869 recombination and repair protein; Provisional
Probab=37.51 E-value=9e+02 Score=30.06 Aligned_cols=25 Identities=8% Similarity=0.057 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001602 183 QDVRSELTKLRGVLFYKVLEDLHAH 207 (1046)
Q Consensus 183 ~~lr~~L~~q~~~L~d~lieEL~~h 207 (1046)
..+...|...+..-...|-++++.+
T Consensus 358 ~~~A~~LS~~R~~aA~~l~~~v~~~ 382 (553)
T PRK10869 358 LETAQKLHQSRQRYAKELAQLITES 382 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 59
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=37.16 E-value=6.8e+02 Score=31.22 Aligned_cols=122 Identities=15% Similarity=0.143 Sum_probs=70.1
Q ss_pred HHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-chHHHHHHHHhh-HHHHHHHHHHHHHHhhccHH
Q 001602 69 VHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTR-NKQLHQLWYRSV-TLRHIISLLDQIEGIAKVPA 146 (1046)
Q Consensus 69 V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~-~~~L~~L~~~s~-~~~~~i~~L~~ie~l~~vP~ 146 (1046)
|..-+...|-.+..+-.....|-..+.++..+++.|..++...... .+++..+..--- +=+.+.++...|+.++..-.
T Consensus 230 ~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~ 309 (629)
T KOG0963|consen 230 VAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLV 309 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555566666666666677777778999999998887664 344433332221 44555566666777665433
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 001602 147 RIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDL 204 (1046)
Q Consensus 147 ~ie~~i~~k~y~~A~~lL~~~~~~l~~~~L~~i~aL~~lr~~L~~q~~~L~d~lieEL 204 (1046)
+.. +-....+..+++.-=.-++.|..++..|+++ +.||.|-.||
T Consensus 310 ~e~------------e~~~~qI~~le~~l~~~~~~leel~~kL~~~--sDYeeIK~EL 353 (629)
T KOG0963|consen 310 EER------------EKHKAQISALEKELKAKISELEELKEKLNSR--SDYEEIKKEL 353 (629)
T ss_pred HHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--ccHHHHHHHH
Confidence 321 1122223333331112345777888888777 6677777777
No 60
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=36.10 E-value=4.9e+02 Score=26.59 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=65.6
Q ss_pred CCcchHHHHHHHHHhHhhcCC--CCCCcHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHH
Q 001602 9 ISPEKAYLREELARIEVSWVA--PRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQI 86 (1046)
Q Consensus 9 ~~~~~~~~~~~l~~i~~~w~~--~~f~~~~~~l~~L~s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i 86 (1046)
++-+...+.+.++.|+.+++. ..|.-....+.-. ..++++|++..+. |...|..=.++||--...|.++
T Consensus 42 dne~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~-----~eelerLe~~iKd----l~~lye~Vs~d~Npf~s~~~qe 112 (157)
T COG3352 42 DNEVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDI-----KEELERLEENIKD----LVSLYELVSRDFNPFMSKTPQE 112 (157)
T ss_pred ChHHHHHHHHHHHHHHhhcccccccccchhhhHHHH-----HHHHHHHHHHHHH----HHHHHHHHHHhhhhHHhhhHHH
Confidence 455677788888888888875 3444444433322 2344455544333 3444555678899999999999
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhcc
Q 001602 87 LRL-FSESAESIKELKVDLAEAKRRLGT 113 (1046)
Q Consensus 87 ~~~-i~~sq~~i~~lk~~L~~~k~~L~~ 113 (1046)
++. +.+-.++|.++|.-++.++..++-
T Consensus 113 s~~~veel~eqV~el~~i~emv~~d~~~ 140 (157)
T COG3352 113 SRGIVEELEEQVNELKMIVEMVIKDLRE 140 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 888 788888999999888888877654
No 61
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=35.95 E-value=6.2e+02 Score=27.74 Aligned_cols=140 Identities=13% Similarity=0.117 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-H--------H----hccCchHHHHHHHHhhHH
Q 001602 62 EEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAK-R--------R----LGTRNKQLHQLWYRSVTL 128 (1046)
Q Consensus 62 ~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k-~--------~----L~~~~~~L~~L~~~s~~~ 128 (1046)
...|..+.-+|-.+|... ..|+..+...++++++|..++..+...- + . |..-....++|-.+...|
T Consensus 71 ~~~Lg~~M~~~g~~~g~~-S~~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~dik~i~k~RKkLe~rRLdy 149 (229)
T cd07616 71 PELLGQYMIDAGNEFGPG-TAYGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEGDYKTITKERKLLQNKRLDL 149 (229)
T ss_pred HHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666543 3466666666666666666666655441 1 1 111123445555555555
Q ss_pred HHHHHHHHH--HHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHH--HHHHHHHHHH
Q 001602 129 RHIISLLDQ--IEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRG--VLFYKVLEDL 204 (1046)
Q Consensus 129 ~~~i~~L~~--ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~l~~~~L~~i~aL~~lr~~L~~q~~--~L~d~lieEL 204 (1046)
+..-.-+.. -++-+.+| ..|-..++-+|.++.+.-.....-+..- ++.-+..|+.-++.|-. .-.-.++++|
T Consensus 150 D~~K~r~~kAk~~~~~~~~-e~elr~ae~efees~E~a~~~m~~i~~~---~~e~~~~L~~lv~AQl~Yh~~~~e~L~~L 225 (229)
T cd07616 150 DAAKTRLKKAKVAEARAAA-EQELRITQSEFDRQAEITRLLLEGISST---HAHHLRCLNDFVEAQMTYYAQCYQYMLDL 225 (229)
T ss_pred HHHHHHHhcCCcchhhcch-HHHHHHHHHHHHHHHHHHHHHHHhhhhc---ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554432 22233232 2233346677888888777766555421 34456666666655542 2233444555
Q ss_pred HH
Q 001602 205 HA 206 (1046)
Q Consensus 205 ~~ 206 (1046)
+.
T Consensus 226 ~~ 227 (229)
T cd07616 226 QK 227 (229)
T ss_pred Hh
Confidence 44
No 62
>COG4915 XpaC 5-bromo-4-chloroindolyl phosphate hydrolysis protein [General function prediction only]
Probab=33.71 E-value=5.6e+02 Score=26.99 Aligned_cols=96 Identities=18% Similarity=0.342 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhhHHHHHHHHHHHHHHhhccHHHHHHHHhc--cCHHHHHH--------
Q 001602 93 SAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAG--KQYYAAVQ-------- 162 (1046)
Q Consensus 93 sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~--k~y~~A~~-------- 162 (1046)
+....+=+|++|++|+..+.. |.......+-|+...++.+..++-.+|=.++.+ ++|..|-+
T Consensus 66 T~kdykyiR~nLeearqki~~--------l~K~l~q~kslq~f~q~n~~l~iskriy~~vkq~Pk~fykae~FfyshLdn 137 (204)
T COG4915 66 TDKDYKYIRENLEEARQKIKR--------LEKLLKQEKSLQVFEQVNGGLEISKRIYKYVKQEPKRFYKAEEFFYSHLDN 137 (204)
T ss_pred ccchHHHHHHhHHHHHHHHHH--------HHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhhHH
Confidence 344444555556655555532 223333334444555555544444444444433 23333322
Q ss_pred --HHHHHHHHhcccCCCCcc---chHHHHHHHHHHHHHH
Q 001602 163 --LHAQSALMLEREGLQTVG---ALQDVRSELTKLRGVL 196 (1046)
Q Consensus 163 --lL~~~~~~l~~~~L~~i~---aL~~lr~~L~~q~~~L 196 (1046)
-|++.+.-+.+.+..+.. .|++.|--|....++|
T Consensus 138 ~veLtekya~L~kqpvKskei~q~LseTrilL~elsr~i 176 (204)
T COG4915 138 MVELTEKYAFLKKQPVKSKEINQDLSETRILLKELSRSI 176 (204)
T ss_pred HHHHHHHHHHHHhCCcccHHHHhhHHHHHHHHHHHHHHH
Confidence 256777778777777766 6777777776655544
No 63
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=33.28 E-value=6.2e+02 Score=26.95 Aligned_cols=101 Identities=10% Similarity=0.166 Sum_probs=71.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 001602 46 DREGEVQILKDQNDIIEEVVDEVVHAY----------HTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRN 115 (1046)
Q Consensus 46 ~~~~~~~~l~~~~~~~~~~L~~~V~~h----------~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~ 115 (1046)
.+.+.+.+|.....+++..++.+..++ --+.++--++-+.+-..|..-.+.|+.+|+.|..++.......
T Consensus 9 ar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~ 88 (194)
T PF15619_consen 9 ARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELE 88 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777666554 3345555555588888899999999999999999999888888
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHhhccHH
Q 001602 116 KQLHQLWYRSVTLRHIISLLDQIEGIAKVPA 146 (1046)
Q Consensus 116 ~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~ 146 (1046)
..|++.-.+-..-+.-++-|.++-+=+.+|+
T Consensus 89 ~klk~~~~el~k~~~~l~~L~~L~~dknL~e 119 (194)
T PF15619_consen 89 RKLKDKDEELLKTKDELKHLKKLSEDKNLAE 119 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Confidence 8888666666666666665555555555554
No 64
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=33.06 E-value=4.4e+02 Score=28.72 Aligned_cols=139 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHhccCchHHHHHHHHhhHH
Q 001602 62 EEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAE-------------AKRRLGTRNKQLHQLWYRSVTL 128 (1046)
Q Consensus 62 ~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~-------------~k~~L~~~~~~L~~L~~~s~~~ 128 (1046)
...|..+..+|-++|...= .|+..+..+++++.+|..++..+.. ....|..=...-++|-.+...|
T Consensus 66 ~~~Lg~~M~~~g~elg~~S-~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLdy 144 (223)
T cd07592 66 EGLLGEVMLKYGRELGEDS-NFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKDLKEINHHRKKLEGRRLDY 144 (223)
T ss_pred ccHHHHHHHHHHhhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCccchHHH---HHHHHHHHHHHHHHHHHHHH
Q 001602 129 RHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDV---RSELTKLRGVLFYKVLEDLH 205 (1046)
Q Consensus 129 ~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~l~~~~L~~i~aL~~l---r~~L~~q~~~L~d~lieEL~ 205 (1046)
+..-.-+... .+-|--.++.+|.++.+.....+.-+-..+-..|..|..+ ....-.+-..+...|..+|+
T Consensus 145 D~~k~k~~k~-------~eeEl~~Ae~kfe~s~E~a~~~M~~il~~e~e~~~~L~~lveAQl~Yh~~~~e~L~~l~~~L~ 217 (223)
T cd07592 145 DYKKRKQGKG-------PDEELKQAEEKFEESKELAENSMFNLLENDVEQVSQLSALVEAQLDYHRQSAEILEELQSKLQ 217 (223)
T ss_pred HHHHHhcccC-------chHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhh
Q 001602 206 AHL 208 (1046)
Q Consensus 206 ~hL 208 (1046)
..|
T Consensus 218 ~~~ 220 (223)
T cd07592 218 ERI 220 (223)
T ss_pred HHh
No 65
>PRK14140 heat shock protein GrpE; Provisional
Probab=31.63 E-value=2.2e+02 Score=30.33 Aligned_cols=17 Identities=18% Similarity=0.382 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhhcc
Q 001602 128 LRHIISLLDQIEGIAKV 144 (1046)
Q Consensus 128 ~~~~i~~L~~ie~l~~v 144 (1046)
.+.+|.++|.++...+.
T Consensus 90 ~~~LLpvlDnLerAl~~ 106 (191)
T PRK14140 90 ASDLLPALDNFERALQI 106 (191)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 45666666666665543
No 66
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=30.43 E-value=9.3e+02 Score=32.55 Aligned_cols=122 Identities=15% Similarity=0.105 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhhHHHHHHHHHHHHHHhhccHHHHHHHHhccCHH-HHHH
Q 001602 84 SQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYY-AAVQ 162 (1046)
Q Consensus 84 ~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~-~A~~ 162 (1046)
.+......++-+++..++..|.++...+....++.++|-.-+..|..+|+.+.. +.+.+-++++.+...+.-+ ....
T Consensus 528 q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e--~~~~~~d~l~~le~~k~~ls~~~~ 605 (1317)
T KOG0612|consen 528 QKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE--ENRDLEDKLSLLEESKSKLSKENK 605 (1317)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh--ccccHHHHHHHHHHHHHHHHHHHH
Confidence 556667778889999999999999999999999999999999999988887665 5666666666655543222 1111
Q ss_pred HHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001602 163 LHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAH 207 (1046)
Q Consensus 163 lL~~~~~~l~~~~L~~i~aL~~lr~~L~~q~~~L~d~lieEL~~h 207 (1046)
.+........+..-...+...+++..+...+..+-..-.+++.-.
T Consensus 606 ~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~ 650 (1317)
T KOG0612|consen 606 KLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVE 650 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHH
Confidence 222222222221222233444555555555554444444444333
No 67
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=29.60 E-value=3.1e+02 Score=31.29 Aligned_cols=96 Identities=17% Similarity=0.132 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhhHHHHH
Q 001602 52 QILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHI 131 (1046)
Q Consensus 52 ~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~ 131 (1046)
..|...|....+..+.. .+|- -..-|...+.+++.+|...|+.|++... +. -...+.-.+-
T Consensus 63 ~~lk~~Ye~~~k~~~~~-----~E~d----~~~~l~~~v~d~~rri~~~kerL~e~~e-------e~---~~e~~~k~~~ 123 (319)
T KOG0796|consen 63 EALKADYERASKERDYG-----YEWD----ALEILERFVADVDRRIEKAKERLAETVE-------ER---SEEAARKAEK 123 (319)
T ss_pred HHHHHHHhhchHhhhhh-----hhHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hh---hhHHHHHHHH
Confidence 45566666666554432 2222 3445666788999999999999999833 11 1111111222
Q ss_pred HHHHHHHHHhhccHHHHHHHHhccCHHHHHHHHHHHH
Q 001602 132 ISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSA 168 (1046)
Q Consensus 132 i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~ 168 (1046)
|..|+ |.|..+=+++|+|..++....|+.++.++=
T Consensus 124 v~~l~--e~I~~~l~~~E~LG~eG~Veeaq~~~~e~E 158 (319)
T KOG0796|consen 124 VHELE--EKIGKLLEKAEELGEEGNVEEAQKAMKEVE 158 (319)
T ss_pred HHHHH--HHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 33333 566667789999999999999988876653
No 68
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=29.38 E-value=1.2e+02 Score=26.50 Aligned_cols=35 Identities=23% Similarity=0.188 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 001602 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQN 82 (1046)
Q Consensus 48 ~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~s 82 (1046)
..+++++.+..+++++.++-++.+.+|-|-+-|+.
T Consensus 14 ~~dfne~~kRLdeieekvef~~~Ev~Qr~GkkiGR 48 (75)
T COG4064 14 PDDFNEIHKRLDEIEEKVEFVNGEVYQRIGKKIGR 48 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 67889999999999999999999999999998875
No 69
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=28.85 E-value=6.6e+02 Score=25.87 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=19.1
Q ss_pred HhccCHHHHHHHHHHHHHHhcccCCCCccchHH
Q 001602 152 IAGKQYYAAVQLHAQSALMLEREGLQTVGALQD 184 (1046)
Q Consensus 152 i~~k~y~~A~~lL~~~~~~l~~~~L~~i~aL~~ 184 (1046)
-+++.|..+++-+.+.........+..+..+++
T Consensus 123 k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~q~ 155 (191)
T cd07610 123 KADEEYREQVEKLNPAQSEYEEEKLNKIQAEQE 155 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 456678888877777666555433333333333
No 70
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.59 E-value=6e+02 Score=28.08 Aligned_cols=129 Identities=13% Similarity=0.146 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHH----hhhhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhc----cCchHHHHH
Q 001602 59 DIIEEVVDEVVHAYHTGFNKA----IQNYSQILRLFSESAESIKELKVDLAEA---------KRRLG----TRNKQLHQL 121 (1046)
Q Consensus 59 ~~~~~~L~~~V~~h~~~Fn~s----I~sy~~i~~~i~~sq~~i~~lk~~L~~~---------k~~L~----~~~~~L~~L 121 (1046)
+-+..+|..+..+|-+.|..+ -..|++++..+++++++|...|...... +..|. .-...-++|
T Consensus 77 kTl~~aLs~~m~~~~~~l~~~~~~~~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkl 156 (242)
T cd07600 77 KTLNHALSRAALASSLELKSLEPEDEDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSFQKAHKARKKV 156 (242)
T ss_pred CcHHHHHHHHHHHHHHHhCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888775 6678888888888888888755443321 22222 112333555
Q ss_pred HHHhhHHHHHHHHHHHH---HHhhccHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHH
Q 001602 122 WYRSVTLRHIISLLDQI---EGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLR 193 (1046)
Q Consensus 122 ~~~s~~~~~~i~~L~~i---e~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~l~~~~L~~i~aL~~lr~~L~~q~ 193 (1046)
-.+...|+-+-.-+... +.--...+++| -++.+|..|++.-+..+.-+- .+..-++.|+.-++.|-
T Consensus 157 e~~RLd~D~~K~~~~ka~~~~k~~~~~~e~E--~aEdef~~a~E~a~~~M~~il----~~~e~i~~L~~fv~AQl 225 (242)
T cd07600 157 EDKRLQLDTARAELKSAEPAEKQEAARVEVE--TAEDEFVSATEEAVELMKEVL----DNPEPLQLLKELVKAQL 225 (242)
T ss_pred HHHHHHHHHHHHHHHhccccccccchHHHHH--HHHHHHHHhHHHHHHHHHHHH----hhhHHHHHHHHHHHHHH
Confidence 56666666665555433 11112333343 477788888876666665552 23445666666666543
No 71
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=28.46 E-value=5.9e+02 Score=25.22 Aligned_cols=71 Identities=18% Similarity=0.122 Sum_probs=49.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 001602 45 KDREGEVQILKDQNDIIEEVVD---EVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRN 115 (1046)
Q Consensus 45 ~~~~~~~~~l~~~~~~~~~~L~---~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~ 115 (1046)
+..+..++.|...+..++-.+. -++..+..+--+-=..+..|...|...++.|..+|..|..||.....+.
T Consensus 42 e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~ 115 (139)
T PF05615_consen 42 EESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKE 115 (139)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677766666665544 3455544444444455677788899999999999999999998776654
No 72
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=28.39 E-value=5.9e+02 Score=30.49 Aligned_cols=61 Identities=13% Similarity=0.215 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHHH
Q 001602 47 REGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYS--QILRLFSESAESIKELKVDLAEA 107 (1046)
Q Consensus 47 ~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~--~i~~~i~~sq~~i~~lk~~L~~~ 107 (1046)
......++.....++..++...+..+.+.++.--..+. .-...+...++++..+.+.|..+
T Consensus 262 ~~e~~q~Ld~l~~rL~~a~~~~L~~~~~~L~~L~~rL~~~~P~~~l~~~~q~L~~l~~rL~~a 324 (438)
T PRK00286 262 RAELLQRLQQLQQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQRA 324 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677777788888888888888888877555542 23345566666777776666655
No 73
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.95 E-value=4.3e+02 Score=31.40 Aligned_cols=109 Identities=10% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHhh-ccCChhHHHHHHHHHHHHHHHHHHHHH------------------HHhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 001602 38 VVHIL-TSKDREGEVQILKDQNDIIEEVVDEVV------------------HAYHTGFNKAIQNYSQILRLFSESAESIK 98 (1046)
Q Consensus 38 ~l~~L-~s~~~~~~~~~l~~~~~~~~~~L~~~V------------------~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~ 98 (1046)
|..++ +-....++.+.|++..++++..++..+ .+|+..-.++..+--.|++.|.+||.+
T Consensus 235 V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~n-- 312 (439)
T KOG2911|consen 235 VADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTN-- 312 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhccc--
Q ss_pred HHHHHHHHHHHHhccCchHHHHHHHHhhHHHHHHHHHHHHHHhhccHHHHHHHHhc
Q 001602 99 ELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAG 154 (1046)
Q Consensus 99 ~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~ 154 (1046)
+..=..+..-.+-|+........+.++=++|++|++...--++|++.|+.
T Consensus 313 ------kvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~ 362 (439)
T KOG2911|consen 313 ------KVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALAS 362 (439)
T ss_pred ------HHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhc
No 74
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.08 E-value=7.3e+02 Score=26.72 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 001602 48 EGEVQILKDQNDIIEEVVDEVVHA 71 (1046)
Q Consensus 48 ~~~~~~l~~~~~~~~~~L~~~V~~ 71 (1046)
...+++++++.+++...|+++-.+
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 456678888888888888776544
No 75
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=26.54 E-value=8.3e+02 Score=28.03 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=15.5
Q ss_pred HHHHHHHHhcccCCCCccchHHHHHHHHH
Q 001602 163 LHAQSALMLEREGLQTVGALQDVRSELTK 191 (1046)
Q Consensus 163 lL~~~~~~l~~~~L~~i~aL~~lr~~L~~ 191 (1046)
-|.++-+..+.-.-|+..=+..|+..+..
T Consensus 254 ~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~ 282 (312)
T smart00787 254 EIAEAEKKLEQCRGFTFKEIEKLKEQLKL 282 (312)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34444444544455666666666666543
No 76
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.99 E-value=6.3e+02 Score=31.70 Aligned_cols=147 Identities=15% Similarity=0.191 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhhH-------HHHH
Q 001602 59 DIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT-------LRHI 131 (1046)
Q Consensus 59 ~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~-------~~~~ 131 (1046)
+++.+.|+.+=-++-|..-.|=..-.++++.|.++-..+..+-+.|..|...|+.-|+++...-.+... -...
T Consensus 196 E~L~reLq~LdgANiqsilaSE~~Vn~ll~~ldaAl~~vd~~e~~Ld~yediL~hvre~iE~Ieekn~lie~~n~Nn~kL 275 (867)
T KOG2148|consen 196 ERLKRELQALDAANIQSILASEPLVNELLNGLDAALNEVDDMEEWLDSYEDILRHVREDIESIEEKNNLIEMQNVNNKKL 275 (867)
T ss_pred HHHHHHHHhhhcccHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhccchHHH
Confidence 455666666666666666666667778888899999999999999999999888888777655433321 2333
Q ss_pred HHHHHH-HHHhhccHHHHHHHHhccCHHHH------HHHHHHHHHHhcccCC----CCccchHHHHHHHHHHHHHHHHHH
Q 001602 132 ISLLDQ-IEGIAKVPARIEKLIAGKQYYAA------VQLHAQSALMLEREGL----QTVGALQDVRSELTKLRGVLFYKV 200 (1046)
Q Consensus 132 i~~L~~-ie~l~~vP~~ie~~i~~k~y~~A------~~lL~~~~~~l~~~~L----~~i~aL~~lr~~L~~q~~~L~d~l 200 (1046)
++=|+. |+.|. ||..=-+-+.+..|..| ..-..+|+.-+..++| .++.|.+|=|++|+..+..+.+.+
T Consensus 276 ~eEl~kvin~L~-vp~shi~aL~egdf~~a~~~ieact~aA~al~q~~~~~ldp~~l~m~Avkdqr~eleklk~~Fvrrl 354 (867)
T KOG2148|consen 276 IEELDKVINRLD-VPSSHIAALTEGDFDEADQGIEACTWAAKALRQLMNPNLDPIYLNMRAVKDQRAELEKLKATFVRRL 354 (867)
T ss_pred HHHHHHHHHhcc-CcHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 45555 88877777777777655 3334455555544444 466789999999988887777777
Q ss_pred HHHHHH
Q 001602 201 LEDLHA 206 (1046)
Q Consensus 201 ieEL~~ 206 (1046)
.+=|.+
T Consensus 355 ssfLnn 360 (867)
T KOG2148|consen 355 SSFLNN 360 (867)
T ss_pred HHHHHH
Confidence 666644
No 77
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.85 E-value=6.2e+02 Score=32.83 Aligned_cols=86 Identities=14% Similarity=0.248 Sum_probs=55.2
Q ss_pred HHHHHHHhccCchHH-HHHHHHhhHH---HHHHHHHHHHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCc
Q 001602 104 LAEAKRRLGTRNKQL-HQLWYRSVTL---RHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTV 179 (1046)
Q Consensus 104 L~~~k~~L~~~~~~L-~~L~~~s~~~---~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~l~~~~L~~i 179 (1046)
|..|-.....+.+-+ ..+..|..+. +-++-+|.....|-..|..||.-|.+++|..++.=-.+|..+.-+
T Consensus 247 l~n~i~~~~s~ad~iF~~vl~Rk~~ADstRsvL~~lqRfkfLFnLp~~ier~i~kGeYd~vvndYekAKsl~~~------ 320 (934)
T KOG2347|consen 247 LENCIKNSTSRADLIFEDVLERKDKADSTRSVLGVLQRFKFLFNLPSNIERSIKKGEYDTVVNDYEKAKSLFGK------ 320 (934)
T ss_pred HHHHHHHhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcchhhhhHhhcCCceeeccchhhHHHhhcc------
Confidence 555555555443332 3333333333 356677777778888999999999999999888877777766644
Q ss_pred cchHHHHHHHHHHHHH
Q 001602 180 GALQDVRSELTKLRGV 195 (1046)
Q Consensus 180 ~aL~~lr~~L~~q~~~ 195 (1046)
--+.-+|.+|++-++.
T Consensus 321 t~v~~Fkk~l~Eve~~ 336 (934)
T KOG2347|consen 321 TEVNLFKKVLEEVEKR 336 (934)
T ss_pred cccHHHHHHHHHHHHH
Confidence 3344555555554443
No 78
>PHA02562 46 endonuclease subunit; Provisional
Probab=24.15 E-value=5.2e+02 Score=31.76 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=9.6
Q ss_pred cchHHHHHHHHHHHHHHHHHH
Q 001602 180 GALQDVRSELTKLRGVLFYKV 200 (1046)
Q Consensus 180 ~aL~~lr~~L~~q~~~L~d~l 200 (1046)
..|.+.+.+|+.+.+.|-+.+
T Consensus 302 ~~l~d~i~~l~~~l~~l~~~i 322 (562)
T PHA02562 302 TKIKDKLKELQHSLEKLDTAI 322 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555544444444433
No 79
>KOG3745 consensus Exocyst subunit - Sec10p [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.97 E-value=1.2e+03 Score=29.92 Aligned_cols=187 Identities=11% Similarity=0.136 Sum_probs=118.5
Q ss_pred CCCCCCcchHHHHHHHHHhHh---hcC-CCCCCcHHHHHHhh--------ccCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001602 5 DGLPISPEKAYLREELARIEV---SWV-APRFDSLPHVVHIL--------TSKDREGEVQILKDQNDIIEEVVDEVVHAY 72 (1046)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~i~~---~w~-~~~f~~~~~~l~~L--------~s~~~~~~~~~l~~~~~~~~~~L~~~V~~h 72 (1046)
+-.|.+.+ .+|+.....++- ... .++|+|..+.-... -.+.-+...+.+++.....+..=..-|+..
T Consensus 19 ~~~~~~~~-e~Ie~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~eL~~L~e~~qnk~~~~e~~~~~~q~s~~kkv~~l 97 (763)
T KOG3745|consen 19 SCKDINSD-EFIEKLVWRLPLVNRSFQQSKDLDPKGLIKTFENEIKELTLLDERYQNKIRMLEEQMSTEQNSYKKKVDKL 97 (763)
T ss_pred cCCCcchH-HHHHHHHhcCccccccccchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444433 345555555531 111 15677776654442 111234556667777776677777778888
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhhHHHHHHHHHHHHHHhhccHHHHHHHH
Q 001602 73 HTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLI 152 (1046)
Q Consensus 73 ~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i 152 (1046)
+..+..++-.|......++.-...+-.+++.|+.+...= .+...-.+.++.-++.-.... +.-.+.+-
T Consensus 98 r~k~~~a~~l~~~ld~~~~~v~~~vv~lgq~Le~v~~~r-----------~r~~~a~~lir~~~eF~s~~~-~~i~s~i~ 165 (763)
T KOG3745|consen 98 REKNSTALLLFLQLDDNIFPVSYKVVHLGQQLETVIKPR-----------SRAVDAQELIRYYNEFLSGGR-QYINSDIF 165 (763)
T ss_pred HHhhHHHHHHHhhhhccccccccccccHHHHHHHhhhhH-----------HHHHHHHHHHHHHHHHhccCc-hhHHHHHh
Confidence 888888999999999999988889999999888876543 122222222222222222221 11111111
Q ss_pred -h-ccCHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001602 153 -A-GKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAH 207 (1046)
Q Consensus 153 -~-~k~y~~A~~lL~~~~~~l~~~~L~~i~aL~~lr~~L~~q~~~L~d~lieEL~~h 207 (1046)
+ -++-++|++++..=+.+.+..+.. --+..+..++..-+.|-..++||-.+.
T Consensus 166 ~~~~~k~leaa~~~~kLl~isnel~~~---~f~~tka~I~k~~~~lE~~lleeF~~~ 219 (763)
T KOG3745|consen 166 TSAFDKNLEAADRIKKLLLISNELPYG---KFSETKARIEKKYEVLEQNLLEEFNSA 219 (763)
T ss_pred cChhhhHHHHHHHHHHHHHHhccCCcc---hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 257789999999999999886665 677888899999999999999998654
No 80
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=23.59 E-value=6.3e+02 Score=29.47 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhH
Q 001602 49 GEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYS 84 (1046)
Q Consensus 49 ~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~ 84 (1046)
.+++++-+.|+.+.+.|+. -..|+.+||.+|.-|-
T Consensus 153 ~~~er~~~~y~~~~qElq~-k~t~~~afn~tikife 187 (464)
T KOG4637|consen 153 LEYERLYEEYTRTSQELQM-KRTAIEAFNETIKIFE 187 (464)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHH
Confidence 4455666666666666554 3567889998887664
No 81
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.03 E-value=9.4e+02 Score=28.01 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=36.1
Q ss_pred HHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHH
Q 001602 63 EVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYR 124 (1046)
Q Consensus 63 ~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~ 124 (1046)
..+...+..+...||..|.+-.++...+++-.+.|..+=.++...-..+..+.+++.++-..
T Consensus 165 ~~~~~~~~g~~~~l~~~l~~l~~~~~~ln~~~~~i~~~i~~l~~~~~~~~~~~~~l~~~~~~ 226 (359)
T COG1463 165 NEAAAALAGTGPQLNALLDNLAQFTDALNARDGDIGALIANLNQLLDSLAAASDQLDRLLDN 226 (359)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444455566666666666666666666666666666666666555555555555554433
No 82
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=22.99 E-value=8.9e+02 Score=27.02 Aligned_cols=112 Identities=13% Similarity=0.187 Sum_probs=79.7
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHH
Q 001602 44 SKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWY 123 (1046)
Q Consensus 44 s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~ 123 (1046)
-.+|+.++.+.. +.+++.|+. ++.|-..+...|.....+...+.++...+..+=.++...-.-|..++.+|..|..
T Consensus 26 l~GrG~~lg~~l---~~l~~~l~~-ln~~~~~l~~~l~~l~~v~~~~a~aapdL~~~l~~~~~~s~tL~~~~~~L~~lL~ 101 (267)
T PF11887_consen 26 LDGRGEQLGETL---DDLNTLLAT-LNPRLPQLREDLRNLADVADTYADAAPDLLDALDNLTTTSRTLVDQRQQLDALLL 101 (267)
T ss_pred HcCcchhHHHHH---HHHHHHHHH-HhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 356666655555 444444433 3456677888899999999999999999999999999999999999999998887
Q ss_pred HhhHHHHHHH-HHHHHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHhccc
Q 001602 124 RSVTLRHIIS-LLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLERE 174 (1046)
Q Consensus 124 ~s~~~~~~i~-~L~~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~l~~~ 174 (1046)
.......... +|+. .+.....+++.|.....++.++
T Consensus 102 ~~~~~a~~~~~~l~~---------------n~~~L~~~~~~L~p~~~lL~~~ 138 (267)
T PF11887_consen 102 SATGLADTGTDFLAD---------------NRDNLIRALDDLRPTTDLLAKY 138 (267)
T ss_pred HHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHHHHHHHHHh
Confidence 7665533221 1111 1235667888888888888763
No 83
>PRK14139 heat shock protein GrpE; Provisional
Probab=22.94 E-value=4e+02 Score=28.22 Aligned_cols=50 Identities=10% Similarity=0.169 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhccCHHHHHHHHHHHH-HHhcccCCCCccch
Q 001602 128 LRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSA-LMLEREGLQTVGAL 182 (1046)
Q Consensus 128 ~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~-~~l~~~~L~~i~aL 182 (1046)
.+.+|.++|.+|........ ..+.|..-++++.+.+ +.+.+..+..|+++
T Consensus 85 ~~~LLpv~DnLerAl~~~~~-----~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~ 135 (185)
T PRK14139 85 AESLLPVKDSLEAALADESG-----DLEKLREGVELTLKQLTSAFEKGRVVEINPV 135 (185)
T ss_pred HHHHhhHHhHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHCCCceeCCC
Confidence 35677777777765543211 0123455555555444 44455555555554
No 84
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=22.93 E-value=1.5e+03 Score=28.00 Aligned_cols=46 Identities=7% Similarity=0.196 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001602 58 NDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDL 104 (1046)
Q Consensus 58 ~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L 104 (1046)
-+.++.+|+. +.+|-++...+|++|....+.+.+.|.++..+...+
T Consensus 126 S~~ledaL~a-aq~~ad~l~q~~~~~~~Aq~~l~~aq~~l~~lq~~a 171 (593)
T PRK15374 126 SKEFQTALGE-AQEATDLYEASIKKTDTAKSVYDAAEKKLTQAQNKL 171 (593)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3566677765 588999999999999999999999999999886554
No 85
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=22.92 E-value=7.1e+02 Score=28.85 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001602 84 SQILRLFSESAESIKELKVDLAEAKRR 110 (1046)
Q Consensus 84 ~~i~~~i~~sq~~i~~lk~~L~~~k~~ 110 (1046)
.+..++|+..+.+++.++.+|+.|+..
T Consensus 35 ~~C~ssI~~QkkrLk~L~~sLk~~~~~ 61 (330)
T PF07851_consen 35 DKCSSSISHQKKRLKELKKSLKRCKKS 61 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 344556667777788888888887766
No 86
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=22.75 E-value=1.3e+02 Score=23.54 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhCCCCCCHHHHHHHh
Q 001602 986 LDRVRTYYELLNMPFEALLAFVTEHENLFTTTEYASLL 1023 (1046)
Q Consensus 986 l~ra~~yyeL~~~~~~~ll~~i~e~~~~Fs~~Ey~~ll 1023 (1046)
|+..+.||++=..+++++-..+.-+ ..|.+||+.+.
T Consensus 1 f~~iK~~Y~~g~~t~~~v~~~V~~g--~IT~eey~eIT 36 (40)
T PF09693_consen 1 FEDIKRYYDWGLYTKEDVKNFVEAG--WITKEEYKEIT 36 (40)
T ss_pred ChHHHHHHHcCCCCHHHHHHHhhcC--eECHHHHHHhh
Confidence 4678999999888999988877774 69999998764
No 87
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=22.57 E-value=1.8e+03 Score=28.89 Aligned_cols=92 Identities=17% Similarity=0.298 Sum_probs=65.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHH
Q 001602 45 KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYR 124 (1046)
Q Consensus 45 ~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~ 124 (1046)
.||.+.++++.+..++....+++--.+ -++||..+..-.....+..+++++|.+-+.-+...++ .-+||-.
T Consensus 177 ~GrnP~iNq~l~klkq~~~ei~e~eke--------~a~yh~lLe~r~~~~~rl~~l~~elr~~~~~i~~~~~-~v~l~~~ 247 (984)
T COG4717 177 SGRNPQINQLLEKLKQERNEIDEAEKE--------YATYHKLLESRRAEHARLAELRSELRADRDHIRALRD-AVELWPR 247 (984)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHH
Confidence 455666666665555555554443333 3789999999999999999999999998888877654 4678999
Q ss_pred hhHHHHHHHHHHH-HHHhhccH
Q 001602 125 SVTLRHIISLLDQ-IEGIAKVP 145 (1046)
Q Consensus 125 s~~~~~~i~~L~~-ie~l~~vP 145 (1046)
.++.+..-+-|+. -++.-..|
T Consensus 248 lqE~k~Leqel~~~~~e~~~fP 269 (984)
T COG4717 248 LQEWKQLEQELTRRREELATFP 269 (984)
T ss_pred HHHHHHHHHHhccchhhhccCC
Confidence 9999877777764 34444444
No 88
>KOG2216 consensus Conserved coiled/coiled coil protein [Function unknown]
Probab=22.39 E-value=8.7e+02 Score=27.37 Aligned_cols=139 Identities=19% Similarity=0.236 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH--HHH---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhhHH
Q 001602 54 LKDQNDIIEEVVDEVVHAYHTGF--NKA---IQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTL 128 (1046)
Q Consensus 54 l~~~~~~~~~~L~~~V~~h~~~F--n~s---I~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~ 128 (1046)
+..+++++++++.++-+.-.++= -.. +..|-.....-..+..+...+|...+.+|..+...+=+|+.|-.+-+-+
T Consensus 16 l~t~f~qlqk~ia~ikeak~rg~~~e~~~q~~~~fv~Lr~aNR~~~~q~~~~r~~t~e~k~~vD~~~LQLqnl~yev~Hl 95 (303)
T KOG2216|consen 16 LNTQFDQLQKAIAGIKEAKSRGPIEENRIQTMSKFVLLRHANRLLHAQLKKARKETEEAKNKVDAKHLQLQNLLYEVQHL 95 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCHhhhhHHHHHHHHHHH
Confidence 44555566665555554444443 333 4444444455556667888899999999999999999999988888877
Q ss_pred HHHH-------------HHHHHHHHhhccHHHHHH--HHhccCHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHH
Q 001602 129 RHII-------------SLLDQIEGIAKVPARIEK--LIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLR 193 (1046)
Q Consensus 129 ~~~i-------------~~L~~ie~l~~vP~~ie~--~i~~k~y~~A~~lL~~~~~~l~~~~L~~i~aL~~lr~~L~~q~ 193 (1046)
+..| ++...+|..+..|+-+.. .-++..+ ..-+..++- +|..=..|..++++|..++
T Consensus 96 kkeI~~c~~fks~~~el~Lvs~eEf~kEaP~i~a~ae~sssn~H-------~q~larL~~-ElkQRk~L~~~~~eLl~~K 167 (303)
T KOG2216|consen 96 KKEIKRCLDFKSKYTELELVSEEEFNKEAPEIIADAEESSSNPH-------KQMLARLDF-ELKQRKELSKLYQELLSRK 167 (303)
T ss_pred HHHHHHHHHhhccCcccccccHHHHhhhCCcchhhhHhhcCCcH-------HHHHHHhHH-HHHHHHHHHHHHHHHHHHH
Confidence 6655 455566777777766654 4444444 333344443 6666778999999999999
Q ss_pred HHHHHHH
Q 001602 194 GVLFYKV 200 (1046)
Q Consensus 194 ~~L~d~l 200 (1046)
..|-..+
T Consensus 168 ~~Ll~di 174 (303)
T KOG2216|consen 168 AALLSDI 174 (303)
T ss_pred HHHHHHH
Confidence 8775443
No 89
>PRK14156 heat shock protein GrpE; Provisional
Probab=22.27 E-value=5e+02 Score=27.29 Aligned_cols=86 Identities=16% Similarity=0.226 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCch----HHHH--HHHHhhHHHHHHHHHHHHHHhhccHHHHHHHHhccCHHHHHHH
Q 001602 90 FSESAESIKELKVDLAEAKRRLGTRNK----QLHQ--LWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQL 163 (1046)
Q Consensus 90 i~~sq~~i~~lk~~L~~~k~~L~~~~~----~L~~--L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~l 163 (1046)
+...++.+..+|..+.-+...+..-|. +..+ -+....-.+.+|.++|.++.....+..- ..|...+++
T Consensus 36 l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~~~------~~l~~Gv~m 109 (177)
T PRK14156 36 LELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSLDNLERALAVEGLT------DDVKKGLEM 109 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhCcccc------hhHHHHHHH
Confidence 344555555555555544444433221 1111 2333344578888888888877664322 235667777
Q ss_pred HHHHH-HHhcccCCCCccc
Q 001602 164 HAQSA-LMLEREGLQTVGA 181 (1046)
Q Consensus 164 L~~~~-~~l~~~~L~~i~a 181 (1046)
+.+.+ +.+.+..+..|++
T Consensus 110 i~k~l~~~L~~~GV~~i~~ 128 (177)
T PRK14156 110 VQESLIQALKEEGVEEVAV 128 (177)
T ss_pred HHHHHHHHHHHCCCeecCC
Confidence 77776 6667778888876
No 90
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=22.04 E-value=1e+03 Score=25.86 Aligned_cols=105 Identities=11% Similarity=0.160 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhhHHHH-----HH
Q 001602 59 DIIEEVVDEVVHAYHTGFNKAIQNYSQ-ILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRH-----II 132 (1046)
Q Consensus 59 ~~~~~~L~~~V~~h~~~Fn~sI~sy~~-i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~-----~i 132 (1046)
+++-.+=...+..=.+.|...+.+|-. -+..|+..+.++..-|=.+-.||..+..-.++|+.--..-.+..+ |-
T Consensus 103 ~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~D~~K~r~~kae~elr~A~~kf~~~~E~a~~~M~ 182 (220)
T cd07617 103 KRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISKERRLLQNRRLDLDACKARLKKAEHELRVAQTEFDRQAEVTRLLLE 182 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444445778888887776 566788888888888888888888776654555443333333322 33
Q ss_pred HHHHH-HHHhhccHHHHHHHHhccCHHHHHHHHH
Q 001602 133 SLLDQ-IEGIAKVPARIEKLIAGKQYYAAVQLHA 165 (1046)
Q Consensus 133 ~~L~~-ie~l~~vP~~ie~~i~~k~y~~A~~lL~ 165 (1046)
.+++. +|.|+++-+-|++-+. .|.+|.++|.
T Consensus 183 ~il~~~~e~l~~L~~lv~AQl~--Yh~q~~e~L~ 214 (220)
T cd07617 183 GISSTHVNHLRCLHEFVEAQAT--YYAQCYRHML 214 (220)
T ss_pred HHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 34444 4555554444444442 3334444443
No 91
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=21.69 E-value=74 Score=27.95 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=24.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHhcccC
Q 001602 147 RIEKLIAGKQYYAAVQLHAQSALMLEREG 175 (1046)
Q Consensus 147 ~ie~~i~~k~y~~A~~lL~~~~~~l~~~~ 175 (1046)
-|++.+..++|-.|.+++..+++++...+
T Consensus 13 ~i~~~V~sG~Y~s~SEVir~aLR~le~~e 41 (69)
T TIGR02606 13 FIRSQVQSGRYGSASEVVRAALRLLEERE 41 (69)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Confidence 45667788999999999999999998755
No 92
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=21.51 E-value=8.6e+02 Score=30.82 Aligned_cols=101 Identities=15% Similarity=0.305 Sum_probs=64.8
Q ss_pred CCCCcchHHHHHHHHHh-----HhhcCC-------------------CCC-------CcHHHHHHhh----ccCChhHHH
Q 001602 7 LPISPEKAYLREELARI-----EVSWVA-------------------PRF-------DSLPHVVHIL----TSKDREGEV 51 (1046)
Q Consensus 7 ~~~~~~~~~~~~~l~~i-----~~~w~~-------------------~~f-------~~~~~~l~~L----~s~~~~~~~ 51 (1046)
+|-++|.+++.+++..+ |.+|-+ .+. +.+..++.+| +..+.+.|+
T Consensus 93 lP~~~d~~~l~~lf~~lF~~~~D~~Wl~ai~~~~w~~L~~lL~~~~~~~~~~~~~~~~~ll~Ai~~Ls~~I~a~glepel 172 (643)
T PF10136_consen 93 LPAPPDPNDLSDLFNLLFPRPSDAEWLEAIPDETWLRLFELLGAEEEEDQDASPHWRQELLDAIEMLSYRIAAEGLEPEL 172 (643)
T ss_pred CCCCCChhHHHHHHHHHCCCCCcHHHHHhCCHHHHHHHHHHhCcCccccchhHHHHHHHHHHHHHHHHHHHHhcccCHHH
Confidence 68999999999998766 344442 111 1222334444 344444443
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHhHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001602 52 -------QILKDQNDIIEEVVDEVVHAYHTGFNKAI-QNYSQILRLFSESAESIKELKVDLAEA 107 (1046)
Q Consensus 52 -------~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI-~sy~~i~~~i~~sq~~i~~lk~~L~~~ 107 (1046)
...+..+-.+++.+..+++.|.++-+... ..+..+.--+.+|++.|..+++++...
T Consensus 173 ~r~~p~~~~~~sPF~al~~e~~~~~~~~~~~~~~~~~~d~~~l~vll~qCr~~v~~v~~~~~~~ 236 (643)
T PF10136_consen 173 RRRMPELEERDSPFVALQREVEAFLEAYRQQDEDPDSEDLKHLRVLLDQCREQVDRVRKHLEKY 236 (643)
T ss_pred HhhCCCCcccCCCHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 33445566778888888888777665321 167777778888888888888887766
No 93
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=21.48 E-value=5.9e+02 Score=26.77 Aligned_cols=66 Identities=21% Similarity=0.270 Sum_probs=31.3
Q ss_pred HHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhh-HHHHHHHHHHHH
Q 001602 70 HAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSV-TLRHIISLLDQI 138 (1046)
Q Consensus 70 ~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~-~~~~~i~~L~~i 138 (1046)
...++..|+.+...+.|+.. ..-....+...+..+++.+...-+.|..+...+. .+..+.+++..|
T Consensus 116 ~~~~~~~~~~~~~vsdiv~~---~~~~~~~~~~~~~~~~~~l~~~lekL~~fd~~~~~~~~~~~~~~~~l 182 (204)
T PF04740_consen 116 EDLQDEINSILSSVSDIVSL---PKPSSSSFIDSLEKAKKKLQETLEKLRAFDQQSSSIFSEIEELLQAL 182 (204)
T ss_pred HHHHHHHhhhccchHHHHhh---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444455555555544332 1112345555566666655555555555555443 234443333333
No 94
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=21.45 E-value=1.4e+03 Score=27.16 Aligned_cols=22 Identities=9% Similarity=-0.041 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001602 185 VRSELTKLRGVLFYKVLEDLHA 206 (1046)
Q Consensus 185 lr~~L~~q~~~L~d~lieEL~~ 206 (1046)
++..+......|...--+|...
T Consensus 365 ~~~i~~~~~eeL~~l~eeE~~~ 386 (412)
T PF04108_consen 365 MKKIIREANEELDKLREEEQRR 386 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444466653
No 95
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.39 E-value=1.1e+03 Score=29.24 Aligned_cols=124 Identities=10% Similarity=0.078 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhhHH
Q 001602 49 GEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTL 128 (1046)
Q Consensus 49 ~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~ 128 (1046)
+.+..|+...+.+.--|+.+=++--+-.|+--+-|-.+.+.+-.-++.+..|++-|.+-++.+...|+...
T Consensus 43 R~~v~letLrddLrlylksl~~aMieLIN~DYADFVnLStnLVgld~aln~i~qpL~qlreei~s~rgsV~--------- 113 (705)
T KOG2307|consen 43 RQKVDLETLRDDLRLYLKSLQNAMIELINDDYADFVNLSTNLVGLDDALNKIEQPLNQLREEIKSTRGSVG--------- 113 (705)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccHHHHHHHHHhHHHHHHHHHHHHHhhHH---------
Confidence 34455777778888888888888888899999999999999999999999999999888888777555432
Q ss_pred HHHHHHHH-HHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCccchH
Q 001602 129 RHIISLLD-QIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQ 183 (1046)
Q Consensus 129 ~~~i~~L~-~ie~l~~vP~~ie~~i~~k~y~~A~~lL~~~~~~l~~~~L~~i~aL~ 183 (1046)
+-+..|. +.++..+.-++.+.+.+-.+++.|++-|.+-+..--+ .=+.+||.+
T Consensus 114 -ea~~alr~q~se~~~~Re~k~~lldl~~v~~~ieKL~k~L~s~ps-k~q~~~a~s 167 (705)
T KOG2307|consen 114 -EAERALRQQCSELCSNREKKIELLDLIYVLVAIEKLSKMLLSPPS-KEQQDGATS 167 (705)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cccccccch
Confidence 2333444 7888888888888888888999998888764433222 224566655
No 96
>PF08463 EcoEI_R_C: EcoEI R protein C-terminal; InterPro: IPR013670 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type I restriction endonucleases are components of prokaryotic DNA restriction-modification mechanisms that protects the organism against invading foreign DNA. Type I enzymes have three different subunits subunits - M (modification), S (specificity) and R (restriction) - that form multifunctional enzymes with restriction (3.1.21.3 from EC), methylase (2.1.1.72 from EC) and ATPase activities [, ]. The S subunit is required for both restriction and modification and is responsible for recognition of the DNA sequence specific for the system. The M subunit is necessary for modification, and the R subunit is required for restriction. These enzymes use S-Adenosyl-L-methionine (AdoMet) as the methyl group donor in the methylation reaction, and have a requirement for ATP. They recognise asymmetric DNA sequences split into two domains of specific sequence, one 3-4 bp long and another 4-5 bp long, separated by a nonspecific spacer 6-8 bp in length. Cleavage occurs a considerable distance from the recognition sites, rarely less than 400 bp away and up to 7000 bp away. Adenosyl residues are methylated, one on each strand of the recognition sequence. These enzymes are widespread in eubacteria and archaea. In enteric bacteria they have been subdivide into four families: types IA, IB, IC and ID. Type III restriction endonucleases (3.1.21.5 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. Type III enzymes are hetero-oligomeric, multifunctional proteins composed of two subunits, Res and Mod. The Mod subunit recognises the DNA sequence specific for the system and is a modification methyltransferase; as such it is functionally equivalent to the M and S subunits of type I restriction endonuclease. Res is required for restriction, although it has no enzymatic activity on its own. Type III enzymes recognise short 5-6 bp long asymmetric DNA sequences and cleave 25-27 bp downstream to leave short, single-stranded 5' protrusions. They require the presence of two inversely oriented unmethylated recognition sites for restriction to occur. These enzymes methylate only one strand of the DNA, at the N-6 position of adenosyl residues, so newly replicated DNA will have only one strand methylated, which is sufficient to protect against restriction. Type III enzymes belong to the beta-subfamily of N6 adenine methyltransferases, containing the nine motifs that characterise this family, including motif I, the AdoMet binding pocket (FXGXG), and motif IV, the catalytic region (S/D/N (PP) Y/F) [, ]. This entry represents the C-terminal domain found in both the R subunit of type I enzymes and the Res subunit of type III enzymes. The type I enzyme represented is EcoEI, which recognises 5'-GAGN(7)ATGC-3; the R protein (HsdR) is required for both nuclease and ATPase activity [, ]. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=21.37 E-value=3.3e+02 Score=27.71 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=33.4
Q ss_pred HHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001602 168 ALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLY 209 (1046)
Q Consensus 168 ~~~l~~~~L~~i~aL~~lr~~L~~q~~~L~d~lieEL~~hLY 209 (1046)
...+..+++...|+...+..-+...+ =...+|+||+++||
T Consensus 125 ~~~l~~~pF~~~G~~~~~~~~Fg~~~--~l~~~~~~l~~~Ly 164 (164)
T PF08463_consen 125 PEDLKEPPFSDLGGPGGIIRVFGGKE--QLDEILNELNKNLY 164 (164)
T ss_pred HHHhCCCchhhcCCHHHHHHHcCCHH--HHHHHHHHHHhhcC
Confidence 45667778999999999999997766 56788999999998
No 97
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=21.34 E-value=1.1e+03 Score=26.91 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=19.7
Q ss_pred HHhhccHHHHHHHHhccCHHHHHHHH
Q 001602 139 EGIAKVPARIEKLIAGKQYYAAVQLH 164 (1046)
Q Consensus 139 e~l~~vP~~ie~~i~~k~y~~A~~lL 164 (1046)
++|..+-..|..++++++|.+.....
T Consensus 243 ~Ql~ELRadIK~fvs~rk~de~lg~~ 268 (302)
T PF07139_consen 243 EQLAELRADIKHFVSERKYDEELGRA 268 (302)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHhHh
Confidence 44556667999999999998876543
No 98
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=21.22 E-value=1.7e+02 Score=23.57 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=31.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHhCCCCCCHHHHHHHh
Q 001602 985 RLDRVRTYYELLNMPFEALLAFVTEHENLFTTTEYASLL 1023 (1046)
Q Consensus 985 ~l~ra~~yyeL~~~~~~~ll~~i~e~~~~Fs~~Ey~~ll 1023 (1046)
.|+..++||++=..+++++-..+.-+ .-|.+||+.+-
T Consensus 5 ~~e~iK~~Y~~g~~t~e~v~~~V~~~--~IT~eey~eIT 41 (45)
T TIGR01669 5 SFEKVKTYYLWGYYSNEDVNKFVEKK--LITREQYKVIT 41 (45)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHhhcC--ccCHHHHHHHh
Confidence 58899999999999999998887764 58999998764
No 99
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=21.17 E-value=1.2e+03 Score=27.99 Aligned_cols=60 Identities=12% Similarity=0.138 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHHH
Q 001602 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYS--QILRLFSESAESIKELKVDLAEA 107 (1046)
Q Consensus 48 ~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~--~i~~~i~~sq~~i~~lk~~L~~~ 107 (1046)
....+++.....++..++...+..+.+.++..-..+. .-...+...++++..+.+.|..+
T Consensus 258 ~el~qrLd~l~~RL~~am~~~L~~~r~rL~~L~~RL~~~~P~~~L~~~~qrLd~L~~RL~~a 319 (432)
T TIGR00237 258 DELLQRLDGFNVRLHRAFDTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRKQAA 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777778888888888888888876655543 22344566667777777766654
No 100
>PHA02503 putative transcription regulator; Provisional
Probab=21.06 E-value=69 Score=25.98 Aligned_cols=20 Identities=20% Similarity=0.685 Sum_probs=17.2
Q ss_pred chHHHHHHHHHhhhccchhH
Q 001602 625 GLLAFVENFVKDHLLPTMFV 644 (1046)
Q Consensus 625 ~l~~Fld~Fv~~vFLPql~~ 644 (1046)
.|..|-.+|++|..+|||.|
T Consensus 25 ~l~~~s~~fl~~slipql~e 44 (57)
T PHA02503 25 KLSVYSKDFLQNSLIPQLYE 44 (57)
T ss_pred HHHHHHHHHHHhhhhHHHHH
Confidence 46778889999999999974
No 101
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=20.65 E-value=9.5e+02 Score=24.81 Aligned_cols=91 Identities=16% Similarity=0.205 Sum_probs=53.3
Q ss_pred HHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhccCchHHHHHHHHhhHHHHHHHHHHHHHHh
Q 001602 69 VHAYHTGFNKAIQNYSQILRLFSESAESIKELK-------VDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGI 141 (1046)
Q Consensus 69 V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~lk-------~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l 141 (1046)
+++--.++.+-=..++..+..++.-+++...+. ..|......+..-+++|..+-.+...+..-..-|..=-.+
T Consensus 58 IeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~ 137 (177)
T PF13870_consen 58 IEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGL 137 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 333344444444555555666666666555544 4444444444555555555555555555555556656667
Q ss_pred hccHHHHHHHHhccCHHH
Q 001602 142 AKVPARIEKLIAGKQYYA 159 (1046)
Q Consensus 142 ~~vP~~ie~~i~~k~y~~ 159 (1046)
..+|+-+..|+..+....
T Consensus 138 ~~~P~ll~Dy~~~~~~~~ 155 (177)
T PF13870_consen 138 LGVPALLRDYDKTKEEVE 155 (177)
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 788999988887666544
No 102
>COG4472 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.25 E-value=3.6e+02 Score=24.46 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=32.5
Q ss_pred cchHHHHHHHHHhHhhcCCCCCCcHHHHHHhhccCChh
Q 001602 11 PEKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDRE 48 (1046)
Q Consensus 11 ~~~~~~~~~l~~i~~~w~~~~f~~~~~~l~~L~s~~~~ 48 (1046)
.+...++++|+.+=....+..+||+-..++.|-|.+++
T Consensus 15 ~~~~~v~e~L~~VY~sL~ekGYNpiNQiVGYllSGDPa 52 (88)
T COG4472 15 SDKKDVKETLNDVYNSLEEKGYNPINQIVGYLLSGDPA 52 (88)
T ss_pred ChHHHHHHHHHHHHHHHHHcCCChHHHHHhhhccCCcc
Confidence 35678899999998888899999999999999777763
No 103
>PRK03918 chromosome segregation protein; Provisional
Probab=20.03 E-value=1.9e+03 Score=28.65 Aligned_cols=9 Identities=22% Similarity=0.563 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 001602 196 LFYKVLEDL 204 (1046)
Q Consensus 196 L~d~lieEL 204 (1046)
.++.+..+|
T Consensus 748 ~~~~if~~l 756 (880)
T PRK03918 748 IASEIFEEL 756 (880)
T ss_pred HHHHHHHHH
Confidence 333444444
Done!