BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001603
(1046 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 61/236 (25%), Positives = 96/236 (40%), Gaps = 39/236 (16%)
Query: 571 LKKFPESLGSMKDLMELFLDGTSIAEVPSSIEXXXXXXXXXXXXXXXXXXXPSCINGLRS 630
L +FP+ + L +D + E+P + + P+ I L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRAL-PASIASLNR 151
Query: 631 LKTLNLSGCSKLQNVPETLGQVES---------LEELDISGTAIRRPPSSIFVMNNLKTL 681
L+ L++ C +L +PE L ++ L+ L + T IR P+SI + NLK+L
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211
Query: 682 SFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPN 741
R+ P++ + P++ L L +LDL C P
Sbjct: 212 KI-----------------------RNSPLSALGPAIHHLPKLEELDLRGCTALRN-YPP 247
Query: 742 DIGNLCSLKQLNLSQ-NNFVTLPASINSLFNLGQLDLEDCKRLQSMP----QLPSN 792
G LK+L L +N +TLP I+ L L +LDL C L +P QLP+N
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 402 YSRIEELWNEIKYLNMLKVMKLSHSQNLIKTPDFTGVPNLEELILEGCTRLHEIHPSLLL 461
++ I L I L LK +K+ +S P +P LEEL L GCT L P
Sbjct: 192 WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251
Query: 462 HSKLVILNLKDCTSLTTLPGKI-SMKSLKTLVLSGCLKLTK 501
+ L L LKDC++L TLP I + L+ L L GC+ L++
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 26/204 (12%)
Query: 419 KVMKLSHSQN-------LIKTPD----FTGVPNLEELILEGCTRLHEIHPSLLLHSKLVI 467
+ +LSH Q+ L + PD F G LE L L L + S+ ++L
Sbjct: 99 QAFRLSHLQHXTIDAAGLXELPDTXQQFAG---LETLTLAR-NPLRALPASIASLNRLRE 154
Query: 468 LNLKDCTSLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAG---------SMNDLSELFL 518
L+++ C LT LP ++ + G + L LE+ G ++ +L L +
Sbjct: 155 LSIRACPELTELPEPLASTD-ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKI 213
Query: 519 DRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESL 578
+ + L +I HL L L+L+ C L++ LK L L CS L P +
Sbjct: 214 RNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI 273
Query: 579 GSMKDLMELFLDG-TSIAEVPSSI 601
+ L +L L G +++ +PS I
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSLI 297
Score = 38.1 bits (87), Expect = 0.028, Method: Composition-based stats.
Identities = 56/221 (25%), Positives = 89/221 (40%), Gaps = 21/221 (9%)
Query: 376 LDWHRYPLKSLPSN-FQLEKTVEFNMCYSRIEELWNEIKYLNMLKVMKLSHSQNLIKTPD 434
L+ PL P F+L + + + EL + + L+ + L+ +
Sbjct: 86 LELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPAS 145
Query: 435 FTGVPNLEELILEGCTRLHEIHPSLLL------HSKLVIL-NLK-DCTSLTTLPGKIS-M 485
+ L EL + C L E+ L H LV L +L+ + T + +LP I+ +
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205
Query: 486 KSLKTLVLSGCLKLTKKCLEFAGS----MNDLSELFLDR-TTIEELPLSIQHLTGLVLLN 540
++LK+L K+ L G + L EL L T + P L L
Sbjct: 206 QNLKSL------KIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259
Query: 541 LKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSM 581
LKDC NL +L + RL L+ L L GC L + P + +
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Score = 37.0 bits (84), Expect = 0.053, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 707 RSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASI 766
RS P+ L L + GL E +P+ L+ L L++N LPASI
Sbjct: 89 RSVPLPQFPDQAFRLSHLQHXTIDAAGLXE--LPDTXQQFAGLETLTLARNPLRALPASI 146
Query: 767 NSLFNLGQLDLEDCKRLQSMPQ 788
SL L +L + C L +P+
Sbjct: 147 ASLNRLRELSIRACPELTELPE 168
>pdb|4H09|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|C Chain C, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|D Chain D, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|E Chain E, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
Length = 379
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 4/153 (2%)
Query: 423 LSHSQNLIKTPDFTGVPNLEELILEGCTRLHEIHPSLLLHSKLVILNLKDCTSLTTLPGK 482
S+ +NL K +GV L + G L EI + S L L++CT+L TL
Sbjct: 213 FSYGKNLKKITITSGVTTLGDGAFYGXKALDEIAIPKNVTSIGSFL-LQNCTALKTLNFY 271
Query: 483 ISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLK 542
+K++ L+ SGC LTK + + +F D + + L L + + K
Sbjct: 272 AKVKTVPYLLCSGCSNLTKVVXDNSAIETLEPRVFXDCVKLSSVTLP-TALKTIQVYAFK 330
Query: 543 DCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFP 575
+CK L ++S+ + + +++ G S + K+P
Sbjct: 331 NCKALSTISYP-KSITLIESGAFEG-SSITKYP 361
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 116/314 (36%), Gaps = 43/314 (13%)
Query: 520 RTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLK------- 572
+ T++EL L TG + L +C L SL + L +L SKL+
Sbjct: 390 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 449
Query: 573 ----KFPESLGSMKDLMELFLDGTSI-AEVPSSIEXXXXXXXXXXXXXXXXXXXPSCING 627
+ P+ L +K L L LD + E+PS + P I
Sbjct: 450 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509
Query: 628 LRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRP-PSSIFVMNNLKTLSFSG- 685
L +L L LS S N+P LG SL LD++ P+++F + +F
Sbjct: 510 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 569
Query: 686 --------------CNGPPSSTSWHW-----------HFPFNLMGQRSYPVALMLPSLSG 720
C+G + + P N+ R Y P+
Sbjct: 570 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT-SRVYG-GHTSPTFDN 627
Query: 721 LHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFV-TLPASINSLFNLGQLDLED 779
S+ LD+S L G IP +IG++ L LNL N+ ++P + L L LDL
Sbjct: 628 NGSMMFLDMSYNML-SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 686
Query: 780 CKRLQSMPQLPSNL 793
K +PQ S L
Sbjct: 687 NKLDGRIPQAMSAL 700
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 116/314 (36%), Gaps = 43/314 (13%)
Query: 520 RTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLK------- 572
+ T++EL L TG + L +C L SL + L +L SKL+
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452
Query: 573 ----KFPESLGSMKDLMELFLDGTSI-AEVPSSIEXXXXXXXXXXXXXXXXXXXPSCING 627
+ P+ L +K L L LD + E+PS + P I
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
Query: 628 LRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRP-PSSIFVMNNLKTLSFSG- 685
L +L L LS S N+P LG SL LD++ P+++F + +F
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572
Query: 686 --------------CNGPPSSTSWHW-----------HFPFNLMGQRSYPVALMLPSLSG 720
C+G + + P N+ R Y P+
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT-SRVY-GGHTSPTFDN 630
Query: 721 LHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFV-TLPASINSLFNLGQLDLED 779
S+ LD+S L G IP +IG++ L LNL N+ ++P + L L LDL
Sbjct: 631 NGSMMFLDMSYNML-SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689
Query: 780 CKRLQSMPQLPSNL 793
K +PQ S L
Sbjct: 690 NKLDGRIPQAMSAL 703
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 627 GLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPS-SIFV-MNNLKTLSFS 684
G SLK L+LS + LG +E LE LD + +++ S+F+ + NL L S
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429
Query: 685 GCNGPPSSTSWHWHFPFN--------LMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGE 736
+ T ++ FN M S+ + + L +L+ LDLS C L E
Sbjct: 430 H-----THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-E 483
Query: 737 GAIPNDIGNLCSLKQLNLSQNNFVTL 762
P +L SL+ LN+S NNF +L
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSL 509
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 712 ALMLPSLSGLHSLSKLDLSDCGLGEGAIPN-DIGNLCSLKQLNLSQN--NFVTLPASINS 768
+L L + SGL SL KL + L ++ N IG+L +LK+LN++ N LP ++
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLA--SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 769 LFNLGQLDLED-------CKRLQSMPQLP 790
L NL LDL C L+ + Q+P
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 627 GLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPS-SIFV-MNNLKTLSFS 684
G SLK L+LS + LG +E LE LD + +++ S+F+ + NL L S
Sbjct: 395 GTISLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 453
Query: 685 GCNGPPSSTSWHWHFPFN--------LMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGE 736
+ T ++ FN M S+ + + L +L+ LDLS C L E
Sbjct: 454 H-----THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-E 507
Query: 737 GAIPNDIGNLCSLKQLNLSQNNFVTL 762
P +L SL+ LN+S NNF +L
Sbjct: 508 QLSPTAFNSLSSLQVLNMSHNNFFSL 533
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 712 ALMLPSLSGLHSLSKLDLSDCGLGEGAIPN-DIGNLCSLKQLNLSQN--NFVTLPASINS 768
+L L + SGL SL KL + L ++ N IG+L +LK+LN++ N LP ++
Sbjct: 114 SLALGAFSGLSSLQKLVAVETNLA--SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 171
Query: 769 LFNLGQLDLED-------CKRLQSMPQLP 790
L NL LDL C L+ + Q+P
Sbjct: 172 LTNLEHLDLSSNKIQSIYCTDLRVLHQMP 200
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 627 GLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPS-SIFV-MNNLKTLSFS 684
G SLK L+LS + LG +E LE LD + +++ S+F+ + NL L S
Sbjct: 76 GTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 134
Query: 685 GCNGPPSSTSWHWHFPFN--------LMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGE 736
+ T ++ FN M S+ + + L +L+ LDLS C L E
Sbjct: 135 H-----THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-E 188
Query: 737 GAIPNDIGNLCSLKQLNLSQNNFVTL 762
P +L SL+ LN+S NNF +L
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSL 214
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 19/187 (10%)
Query: 406 EELWNEIKYLNMLKVMKLSHSQNLIKTPDFTGV----PNLEELILEGCTRLHEIHPSLLL 461
E LW + L+ +V + S ++I+ G+ L+ L LEG I +L
Sbjct: 46 ESLW---QTLDEFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 102
Query: 462 HSKLVILNLKDCTSLTTLPGKISMKS---LKTLVLSGCLKLTKKCLEFAGSM--NDLSEL 516
+S LV LNL C+ + + + S L L LS C T+K ++ A + +++L
Sbjct: 103 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 162
Query: 517 FLD--RTTIEELPLS--IQHLTGLVLLNLKDCKNLKS-LSHTLRRLQCLKNLTLSGCSKL 571
L R +++ LS ++ LV L+L D LK+ +L L++L+LS C +
Sbjct: 163 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 222
Query: 572 KKFPESL 578
PE+L
Sbjct: 223 --IPETL 227
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 749 LKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMPQLPSNLYEVQV--NGCASLVT 806
L++L++S N +LPA + L L + +L S+P LPS L E+ V N ASL T
Sbjct: 143 LQELSVSDNQLASLPALPSELCKLWAYN----NQLTSLPMLPSGLQELSVSDNQLASLPT 198
Query: 807 LSGAL-KLCK--SKCTSINCIGS----LKLAGNNGLAISMLREYLK 845
L L KL ++ TS+ + S L ++GN ++ +L LK
Sbjct: 199 LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELK 244
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 712 ALMLPSLSGLHSLSKLDLSDCGLGEGAIPN-DIGNLCSLKQLNLSQN--NFVTLPASINS 768
+L L + SGL SL KL + L ++ N IG+L +LK+LN++ N LP ++
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLA--SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 769 LFNLGQLDLED-------CKRLQSMPQLP 790
L NL LDL C L+ + Q+P
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1O0S|A Chain A, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
pdb|1O0S|B Chain B, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
Length = 605
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 10/56 (17%)
Query: 204 KEPPNRIINILQISFDGLQDLEKKIFLDVACFFKSWDRDHVEKILEGCGFSPVIGI 259
+E PN + +Q+ DGLQD +K+F V C DHV++++ ++P +G+
Sbjct: 87 REQPNDLARYIQL--DGLQDRNEKLFYRVVC-------DHVKELMP-IVYTPTVGL 132
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 712 ALMLPSLSGLHSLSKLDLSDCGLGEGAIPN-DIGNLCSLKQLNLSQN--NFVTLPASINS 768
+L L + SGL SL KL + L ++ N IG+L +LK+LN++ N LP ++
Sbjct: 92 SLALGAFSGLSSLQKLVAVETNLA--SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 149
Query: 769 LFNLGQLDLED-------CKRLQSMPQLP 790
L NL LDL C L+ + Q+P
Sbjct: 150 LTNLEHLDLSSNKIQSIYCTDLRVLHQMP 178
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 712 ALMLPSLSGLHSLSKLDLSDCGLGEGAIPN-DIGNLCSLKQLNLSQN--NFVTLPASINS 768
+L L + SGL SL KL + L ++ N IG+L +LK+LN++ N LP ++
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLA--SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 769 LFNLGQLDLED-------CKRLQSMPQLP 790
L NL LDL C L+ + Q+P
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 712 ALMLPSLSGLHSLSKLDLSDCGLGEGAIPN-DIGNLCSLKQLNLSQN--NFVTLPASINS 768
+L L + SGL SL KL + L ++ N IG+L +LK+LN++ N LP ++
Sbjct: 91 SLALGAFSGLSSLQKLVAVETNLA--SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 148
Query: 769 LFNLGQLDLED-------CKRLQSMPQLP 790
L NL LDL C L+ + Q+P
Sbjct: 149 LTNLEHLDLSSNKIQSIYCTDLRVLHQMP 177
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 712 ALMLPSLSGLHSLSKLDLSDCGLGEGAIPN-DIGNLCSLKQLNLSQN--NFVTLPASINS 768
+L L + SGL SL KL + L ++ N IG+L +LK+LN++ N LP ++
Sbjct: 91 SLALGAFSGLSSLQKLVAVETNLA--SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 148
Query: 769 LFNLGQLDLED-------CKRLQSMPQLP 790
L NL LDL C L+ + Q+P
Sbjct: 149 LTNLEHLDLSSNKIQSIYCTDLRVLHQMP 177
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 712 ALMLPSLSGLHSLSKLDLSDCGLGEGAIPN-DIGNLCSLKQLNLSQN--NFVTLPASINS 768
+L L + SGL SL KL + L ++ N IG+L +LK+LN++ N LP ++
Sbjct: 92 SLALGAFSGLSSLQKLVALETNLA--SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 149
Query: 769 LFNLGQLDLED-------CKRLQSMPQLP 790
L NL LDL C L+ + Q+P
Sbjct: 150 LTNLEHLDLSSNKIQSIYCTDLRVLHQMP 178
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 21/99 (21%)
Query: 715 LPSLSGLHSLSKLDLSD---CGLGE--------GAIPNDIGNLC----SLKQLNLSQNNF 759
LP L SL+ LD+S+ GL E A N+I +LC SL++LN+S N
Sbjct: 272 LPELP--QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL 329
Query: 760 VTLPASINSLFNLGQLDLEDCKRLQSMPQLPSNLYEVQV 798
+ LPA L L + L +P+LP NL ++ V
Sbjct: 330 IELPALPPRLERL----IASFNHLAEVPELPQNLKQLHV 364
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 8/142 (5%)
Query: 461 LHSKLVILNLKD--CTSLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFL 518
L L LN++D T L LP ++ + + SG +L S N++ L
Sbjct: 255 LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCD 314
Query: 519 DRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGC--SKLKKFPE 576
++EEL +S L L L + + + S +H + +NL + L++FP+
Sbjct: 315 LPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPD 374
Query: 577 SLGSMKDLMELFLDGTSIAEVP 598
S++DL + +AEVP
Sbjct: 375 IPESVEDLRM----NSHLAEVP 392
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 98/228 (42%), Gaps = 21/228 (9%)
Query: 4 IWGMGGLGKTTLARVA---YDLISHEFDGSTFLANVREKSEKEGXXXXXXXXXXXXXXXX 60
I+GM G GK+ LA A + L+ F G ++ K +K G
Sbjct: 152 IYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG-KQDKSGLLMKLQNLCMRLDQEE 210
Query: 61 XXXXX--WNVDDGINIIGSRLRQK--KVLLVIDDVADVEQLQNLARKRDWFGPGSKIVIT 116
N+++ + + + +K + LL++DDV D L+ F +I++T
Sbjct: 211 SFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKA-------FDNQCQILLT 263
Query: 117 TRDKQLLVAHEVDEEHIYNLEV-LSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGG 175
TRDK + + +H+ +E L ++ L++ S+ ++ + + ++K G
Sbjct: 264 TRDKS-VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAE---AHSIIKECKG 319
Query: 176 LPLALTVLGSFLNGRSVDLWRSTLKRLKKEPPNRIINILQISFDGLQD 223
PL ++++G+ L + W L++L+ + RI ++ L +
Sbjct: 320 SPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDE 366
>pdb|2CFC|A Chain A, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
pdb|2CFC|B Chain B, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
pdb|2CFC|C Chain C, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
pdb|2CFC|D Chain D, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
Length = 250
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 14/138 (10%)
Query: 378 WHRYPLKSLPSNFQLEKTVEFNMCYSRIEELWNEIKYL-NMLKVMKLSHSQNLIKTP--- 433
WH Y K L + + N + E + I L N + S + L TP
Sbjct: 47 WHAYADKVLRVRADVADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQ 106
Query: 434 -DFTGVPNLEELILEGCTRLHEIHPSLLLHSKLVILNLKDCTSLTTLPGKISMKSLKTLV 492
D N+ + L GC + P +LL VI+N+ SL PG+ + + K V
Sbjct: 107 FDKVMAVNVRGIFL-GC---RAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAV 162
Query: 493 LSGCLKLTKK-CLEFAGS 509
L+LTK +++AGS
Sbjct: 163 ----LQLTKSVAVDYAGS 176
>pdb|1JJU|B Chain B, Structure Of A Quinohemoprotein Amine Dehydrogenase With A
Unique Redox Cofactor And Highly Unusual Crosslinking
pdb|1PBY|B Chain B, Structure Of The Phenylhydrazine Adduct Of The
Quinohemoprotein Amine Dehydrogenase From Paracoccus
Denitrificans At 1.7 A Resolution
Length = 337
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 772 LGQLDLEDCKRLQSMPQLPSNLYEVQVNGCASLVTLSGAL-KLCKSKCTSINCIGSLKLA 830
L DLE ++ +P LP + Y V V+ S V L GAL L ++ G + L
Sbjct: 262 LESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320
Query: 831 GNNGLAISMLREYLK 845
GN ++++ +R + +
Sbjct: 321 GNASMSLASVRLFTR 335
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 16/180 (8%)
Query: 413 KYLNMLKVMKLSHSQNLIKTPDFTGV----PNLEELILEGCTRLHEIHPSLLLHSKLVIL 468
++ + +V + S ++I+ G+ L+ L LEG I +L +S LV L
Sbjct: 88 EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147
Query: 469 NLKDCTSLTTLPGKISMKS---LKTLVLSGCLKLTKKCLEFAGSM--NDLSELFLD--RT 521
NL C+ + + + S L L LS C T+K ++ A + +++L L R
Sbjct: 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 207
Query: 522 TIEELPLS--IQHLTGLVLLNLKDCKNLKS-LSHTLRRLQCLKNLTLSGCSKLKKFPESL 578
+++ LS ++ LV L+L D LK+ +L L++L+LS C + PE+L
Sbjct: 208 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI--IPETL 265
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 69/172 (40%), Gaps = 35/172 (20%)
Query: 625 INGLRSLKTLNLSGCSKLQNVP-ETLGQVESLEELDISGTAIRRPPSSIFV--------- 674
NGL SL TL L ++L VP + + L EL + I PS F
Sbjct: 79 FNGLPSLNTLELFD-NRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLD 137
Query: 675 -----------------MNNLKTLSFSGCN--GPPSSTSWHWHFPFNLMGQRSYPVALML 715
+ NL+ L+ CN P+ T+ L G R + L+
Sbjct: 138 LGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNR---LDLIR 194
Query: 716 P-SLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASI 766
P S GL SL KL L + N +L SL++LNLS NN ++LP +
Sbjct: 195 PGSFQGLTSLRKLWLMHAQVATIE-RNAFDDLKSLEELNLSHNNLMSLPHDL 245
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 10/144 (6%)
Query: 399 NMCYSRIEELWNEIKY-LNMLKVMKLSHSQNLI---KTPDFTGVPNLEELILEGCTRLHE 454
N+ Y++I ++ +E Y L+ L+V+ LS+ NL+ + +F G+P + + L+
Sbjct: 296 NLAYNKINKIADEAFYGLDNLQVLNLSY--NLLGELYSSNFYGLPKVAYIDLQKNHIAII 353
Query: 455 IHPSLLLHSKLVILNLKDCTSLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLS 514
+ KL L+L+D +LTT+ + S+ + LSG +T + ++ LS
Sbjct: 354 QDQTFKFLEKLQTLDLRD-NALTTIHF---IPSIPDIFLSGNKLVTLPKINLTANLIHLS 409
Query: 515 ELFLDRTTIEELPLSIQHLTGLVL 538
E L+ I L + HL L+L
Sbjct: 410 ENRLENLDILYFLLRVPHLQILIL 433
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 422 KLSHSQN----LIKTPDFTGVPNLEELILEGCTRLHEIHPSLLLHSKLVILNLKDCTSLT 477
K+ SQN +I+ F+ +P L E+ +E L I+P + + L T +
Sbjct: 58 KIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117
Query: 478 TLPGKISMKSLKTLVLSGCLKLTKKCLE---FAGSMNDLSELFLDRTTIEELPLSIQHLT 534
LP + SL+ ++L + +E F G + L+L++ I+E+ S + T
Sbjct: 118 HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT 177
Query: 535 GLVLLNLKDCKNLKSL 550
L LNL D NL+ L
Sbjct: 178 QLDELNLSDNNNLEEL 193
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 631 LKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIF 673
+K L+L +K++++P+ + ++E+L+EL+++ ++ P IF
Sbjct: 423 IKVLDLHS-NKIKSIPKQVVKLEALQELNVASNQLKSVPDGIF 464
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 4/179 (2%)
Query: 506 FAGSMNDLSELFLDRTTIEELPL-SIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLT 564
F+G +N L +L L++ + +P ++ HL GL++L L+ ++ +RL LK L
Sbjct: 148 FSG-LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206
Query: 565 LSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPS-SIEXXXXXXXXXXXXXXXXXXXPS 623
+S L + +L L + ++ VP ++ S
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266
Query: 624 CINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIF-VMNNLKTL 681
++ L L+ + L G P + L L++SG + S+F + NL+TL
Sbjct: 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 94/230 (40%), Gaps = 25/230 (10%)
Query: 4 IWGMGGLGKTTLARVA---YDLISHEFDGSTFLANVREKSEKEGXXXXXXXXXXXXXXXX 60
I+GM G GK+ LA A + L+ F G ++ K +K G
Sbjct: 159 IYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG-KQDKSGLLMKLQNLCMRLDQEE 217
Query: 61 XXXXXWNVDDGINIIGSRLR------QKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIV 114
++ I RLR + LL++DDV D L+ F +I+
Sbjct: 218 SFSQRLPLN--IEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKA-------FDNQCQIL 268
Query: 115 ITTRDKQLLVAHEVDEEHIYNLEV-LSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYA 173
+TT DK + + +H+ +E L ++ L++ S+ ++ + + ++K
Sbjct: 269 LTTSDKS-VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAE---AHSIIKEC 324
Query: 174 GGLPLALTVLGSFLNGRSVDLWRSTLKRLKKEPPNRIINILQISFDGLQD 223
G PL ++++G+ L + W L++L+ + RI ++ L +
Sbjct: 325 KGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDE 373
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 68/169 (40%), Gaps = 35/169 (20%)
Query: 625 INGLRSLKTLNLSGCSKLQNVP-ETLGQVESLEELDISGTAIRRPPSSIFV--------- 674
NGL SL TL L ++L VP + + L EL + I PS F
Sbjct: 79 FNGLPSLNTLELFD-NRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLD 137
Query: 675 -----------------MNNLKTLSFSGCN--GPPSSTSWHWHFPFNLMGQRSYPVALML 715
+ NL+ L+ CN P+ T+ L G R + L+
Sbjct: 138 LGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNR---LDLIR 194
Query: 716 P-SLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLP 763
P S GL SL KL L + N +L SL++LNLS NN ++LP
Sbjct: 195 PGSFQGLTSLRKLWLMHAQVATIE-RNAFDDLKSLEELNLSHNNLMSLP 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,047,560
Number of Sequences: 62578
Number of extensions: 1246625
Number of successful extensions: 3001
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 2902
Number of HSP's gapped (non-prelim): 118
length of query: 1046
length of database: 14,973,337
effective HSP length: 109
effective length of query: 937
effective length of database: 8,152,335
effective search space: 7638737895
effective search space used: 7638737895
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)