Query 001603
Match_columns 1046
No_of_seqs 877 out of 5466
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 04:54:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 4.1E-98 9E-103 953.5 76.2 852 1-992 209-1101(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 6.3E-59 1.4E-63 560.1 25.8 432 1-449 181-652 (889)
3 PLN00113 leucine-rich repeat r 100.0 3.1E-40 6.7E-45 423.9 33.7 505 296-808 42-588 (968)
4 PLN00113 leucine-rich repeat r 100.0 5.4E-38 1.2E-42 403.2 29.6 463 340-804 108-607 (968)
5 PF00931 NB-ARC: NB-ARC domain 100.0 5E-36 1.1E-40 329.3 11.9 250 1-256 21-284 (287)
6 KOG4194 Membrane glycoprotein 100.0 8.3E-31 1.8E-35 281.9 10.0 419 372-871 53-487 (873)
7 KOG4194 Membrane glycoprotein 100.0 7E-31 1.5E-35 282.5 4.8 378 353-756 55-448 (873)
8 KOG0472 Leucine-rich repeat pr 100.0 3.7E-33 8E-38 287.7 -14.3 257 352-615 47-307 (565)
9 KOG0444 Cytoskeletal regulator 100.0 1.9E-31 4.2E-36 287.8 -3.3 364 374-788 10-380 (1255)
10 KOG0472 Leucine-rich repeat pr 100.0 9.8E-32 2.1E-36 277.2 -12.7 412 340-783 81-541 (565)
11 KOG0444 Cytoskeletal regulator 99.9 1.2E-28 2.6E-33 266.3 -1.9 349 435-810 28-381 (1255)
12 PLN03210 Resistant to P. syrin 99.9 1.4E-24 3E-29 278.5 25.3 326 408-808 580-910 (1153)
13 KOG0618 Serine/threonine phosp 99.9 4.7E-28 1E-32 275.1 -5.9 401 342-782 37-488 (1081)
14 KOG0618 Serine/threonine phosp 99.9 1.3E-26 2.8E-31 263.5 -2.3 433 352-804 23-489 (1081)
15 PRK15387 E3 ubiquitin-protein 99.7 3.3E-17 7.1E-22 194.7 18.1 71 372-449 202-272 (788)
16 KOG4237 Extracellular matrix p 99.7 9.5E-19 2.1E-23 181.7 -0.0 276 366-642 62-359 (498)
17 PRK15387 E3 ubiquitin-protein 99.7 1.3E-16 2.8E-21 189.6 15.6 257 353-668 204-460 (788)
18 PRK15370 E3 ubiquitin-protein 99.7 1.8E-16 4E-21 189.9 12.9 53 373-428 180-232 (754)
19 PRK15370 E3 ubiquitin-protein 99.7 2.6E-16 5.5E-21 188.7 13.1 227 351-599 179-405 (754)
20 KOG4237 Extracellular matrix p 99.7 3.1E-18 6.7E-23 178.0 -4.3 369 336-732 77-498 (498)
21 cd00116 LRR_RI Leucine-rich re 99.6 5.2E-16 1.1E-20 173.6 0.5 258 506-781 18-318 (319)
22 KOG0617 Ras suppressor protein 99.5 3.5E-15 7.5E-20 137.6 -2.1 169 580-802 31-201 (264)
23 cd00116 LRR_RI Leucine-rich re 99.5 1.1E-14 2.3E-19 163.0 0.7 250 516-783 3-291 (319)
24 KOG0617 Ras suppressor protein 99.4 5.9E-15 1.3E-19 136.1 -4.3 156 386-567 26-182 (264)
25 PRK04841 transcriptional regul 99.3 4.3E-11 9.2E-16 153.8 22.8 272 1-293 34-335 (903)
26 KOG4658 Apoptotic ATPase [Sign 99.3 5.8E-12 1.3E-16 153.8 7.3 134 386-568 516-652 (889)
27 TIGR03015 pepcterm_ATPase puta 99.1 6.1E-09 1.3E-13 113.1 19.0 178 1-187 45-242 (269)
28 KOG3207 Beta-tubulin folding c 99.0 7.6E-11 1.7E-15 125.4 2.1 187 577-784 141-340 (505)
29 PF05729 NACHT: NACHT domain 99.0 2.7E-09 5.7E-14 106.6 13.0 144 1-152 2-163 (166)
30 KOG1259 Nischarin, modulator o 99.0 1.4E-10 3E-15 116.9 1.1 133 581-763 283-415 (490)
31 KOG3207 Beta-tubulin folding c 98.9 3.1E-10 6.8E-15 120.8 2.0 211 510-760 120-339 (505)
32 KOG0532 Leucine-rich repeat (L 98.9 1.3E-10 2.7E-15 127.4 -1.1 177 573-802 112-291 (722)
33 COG4886 Leucine-rich repeat (L 98.9 2E-09 4.3E-14 124.0 7.2 182 579-788 113-295 (394)
34 KOG1909 Ran GTPase-activating 98.9 1.4E-10 3E-15 120.4 -2.5 246 508-782 27-310 (382)
35 KOG1259 Nischarin, modulator o 98.9 1.3E-09 2.7E-14 110.2 3.2 110 504-617 277-386 (490)
36 KOG0532 Leucine-rich repeat (L 98.8 9E-11 2E-15 128.5 -5.5 192 581-802 74-271 (722)
37 COG4886 Leucine-rich repeat (L 98.8 3.8E-09 8.3E-14 121.6 7.4 194 354-575 97-294 (394)
38 TIGR00635 ruvB Holliday juncti 98.8 4E-08 8.8E-13 108.7 13.4 244 2-274 33-292 (305)
39 PRK00411 cdc6 cell division co 98.8 1.7E-07 3.7E-12 107.9 17.6 221 2-235 58-308 (394)
40 PF14580 LRR_9: Leucine-rich r 98.8 7.8E-09 1.7E-13 101.4 5.2 62 719-782 61-125 (175)
41 PRK00080 ruvB Holliday junctio 98.7 4.3E-08 9.3E-13 109.1 9.9 157 110-274 151-313 (328)
42 PF14580 LRR_9: Leucine-rich r 98.7 8.8E-09 1.9E-13 101.0 3.8 124 348-471 17-148 (175)
43 PRK06893 DNA replication initi 98.7 3.2E-07 6.9E-12 96.1 14.3 148 2-184 42-204 (229)
44 COG3903 Predicted ATPase [Gene 98.6 2E-08 4.3E-13 108.0 4.7 275 2-292 17-316 (414)
45 COG2909 MalT ATP-dependent tra 98.6 6.7E-07 1.5E-11 104.1 16.3 273 1-294 39-342 (894)
46 PF01637 Arch_ATPase: Archaeal 98.6 2.3E-07 4.9E-12 98.5 11.7 178 1-182 22-233 (234)
47 TIGR02928 orc1/cdc6 family rep 98.6 1.7E-06 3.6E-11 98.6 19.3 220 2-233 43-298 (365)
48 COG3899 Predicted ATPase [Gene 98.6 1.9E-07 4.1E-12 115.3 10.8 209 80-292 152-388 (849)
49 KOG1909 Ran GTPase-activating 98.5 1.7E-08 3.6E-13 105.1 -0.4 112 530-641 181-310 (382)
50 COG2256 MGS1 ATPase related to 98.5 4.5E-07 9.8E-12 96.9 10.1 216 3-249 52-290 (436)
51 TIGR03420 DnaA_homol_Hda DnaA 98.5 1.8E-06 3.8E-11 91.1 14.6 149 2-185 41-203 (226)
52 PF13173 AAA_14: AAA domain 98.4 6.8E-07 1.5E-11 84.4 8.4 120 1-144 4-127 (128)
53 PRK08727 hypothetical protein; 98.4 6.8E-06 1.5E-10 86.3 15.1 144 2-180 44-201 (233)
54 PRK09087 hypothetical protein; 98.4 1.1E-05 2.3E-10 84.1 16.1 136 2-183 47-195 (226)
55 PRK15386 type III secretion pr 98.4 1.8E-06 3.8E-11 95.1 10.3 61 581-646 51-111 (426)
56 PLN03150 hypothetical protein; 98.3 1E-06 2.2E-11 106.3 8.7 105 560-664 420-526 (623)
57 KOG4341 F-box protein containi 98.3 2.1E-08 4.6E-13 106.6 -4.9 63 440-502 139-206 (483)
58 PRK15386 type III secretion pr 98.3 1.2E-06 2.5E-11 96.5 8.2 156 625-823 48-210 (426)
59 KOG2120 SCF ubiquitin ligase, 98.3 1E-08 2.2E-13 103.9 -7.2 106 582-687 185-297 (419)
60 PF13401 AAA_22: AAA domain; P 98.3 3.3E-06 7.1E-11 80.4 9.7 111 1-119 6-125 (131)
61 PLN03150 hypothetical protein; 98.3 1.3E-06 2.8E-11 105.5 7.6 106 583-688 419-527 (623)
62 KOG0531 Protein phosphatase 1, 98.3 1.4E-07 3.1E-12 108.7 -0.9 191 558-780 72-265 (414)
63 KOG0531 Protein phosphatase 1, 98.3 1.9E-07 4.1E-12 107.7 0.1 34 584-617 234-267 (414)
64 KOG4341 F-box protein containi 98.2 4.7E-08 1E-12 104.0 -4.6 135 556-690 292-440 (483)
65 PRK14087 dnaA chromosomal repl 98.2 3.9E-05 8.5E-10 88.3 18.5 164 2-185 144-321 (450)
66 PRK13342 recombination factor 98.2 1E-05 2.2E-10 92.9 13.6 152 2-184 39-197 (413)
67 TIGR00678 holB DNA polymerase 98.2 2.3E-05 5E-10 79.7 14.5 90 81-179 95-187 (188)
68 PF00308 Bac_DnaA: Bacterial d 98.2 2.3E-05 5.1E-10 81.2 14.5 154 2-181 37-206 (219)
69 PRK14961 DNA polymerase III su 98.2 4.4E-05 9.6E-10 86.0 17.2 98 81-181 118-218 (363)
70 PRK05642 DNA replication initi 98.2 3.4E-05 7.3E-10 81.1 15.1 150 2-184 48-209 (234)
71 PF13855 LRR_8: Leucine rich r 98.2 9.4E-07 2E-11 71.0 2.5 59 722-781 1-60 (61)
72 PRK14963 DNA polymerase III su 98.2 5.9E-05 1.3E-09 87.7 17.7 97 81-180 115-214 (504)
73 KOG2120 SCF ubiquitin ligase, 98.1 1.3E-07 2.8E-12 96.1 -3.7 175 487-663 186-373 (419)
74 PRK08084 DNA replication initi 98.1 3E-05 6.5E-10 81.6 13.8 147 2-183 48-209 (235)
75 PRK14949 DNA polymerase III su 98.1 3.4E-05 7.3E-10 92.6 15.1 101 80-183 117-220 (944)
76 PRK14960 DNA polymerase III su 98.1 0.00011 2.4E-09 85.6 18.0 99 81-181 117-217 (702)
77 PRK07471 DNA polymerase III su 98.1 0.00019 4.1E-09 80.1 19.5 98 81-184 140-239 (365)
78 KOG2982 Uncharacterized conser 98.1 7.8E-07 1.7E-11 90.5 0.5 86 722-809 199-286 (418)
79 KOG1859 Leucine-rich repeat pr 98.1 7.4E-08 1.6E-12 108.7 -7.7 174 347-524 106-292 (1096)
80 PRK12402 replication factor C 98.1 4.8E-05 1E-09 85.6 14.5 98 82-182 125-225 (337)
81 PRK14962 DNA polymerase III su 98.1 0.00018 3.9E-09 83.0 19.1 102 81-185 116-221 (472)
82 KOG1859 Leucine-rich repeat pr 98.1 9.7E-08 2.1E-12 107.8 -7.5 125 630-782 165-291 (1096)
83 PF13855 LRR_8: Leucine rich r 98.1 3E-06 6.6E-11 68.1 3.1 57 583-639 2-59 (61)
84 TIGR01242 26Sp45 26S proteasom 98.1 2.3E-05 4.9E-10 88.7 11.4 145 2-177 159-328 (364)
85 PRK07003 DNA polymerase III su 98.0 0.00012 2.6E-09 86.2 16.7 100 81-182 118-220 (830)
86 PRK09376 rho transcription ter 98.0 6.3E-06 1.4E-10 89.7 5.9 90 2-94 172-268 (416)
87 KOG2982 Uncharacterized conser 98.0 1.1E-06 2.5E-11 89.4 0.1 181 580-760 69-262 (418)
88 cd01128 rho_factor Transcripti 98.0 6.3E-06 1.4E-10 86.4 5.5 90 2-94 19-115 (249)
89 PRK08903 DnaA regulatory inact 98.0 5.4E-05 1.2E-09 79.6 12.6 149 2-187 45-203 (227)
90 PF05496 RuvB_N: Holliday junc 98.0 5.8E-05 1.3E-09 75.8 11.8 152 2-187 53-225 (233)
91 PRK14088 dnaA chromosomal repl 98.0 0.00011 2.3E-09 84.7 15.7 157 2-181 133-303 (440)
92 PRK06645 DNA polymerase III su 98.0 0.00017 3.6E-09 83.6 16.8 97 81-180 127-226 (507)
93 PRK14956 DNA polymerase III su 98.0 3.5E-05 7.6E-10 87.2 11.0 98 80-180 119-219 (484)
94 PRK05564 DNA polymerase III su 98.0 0.00013 2.8E-09 80.7 15.4 154 2-183 29-190 (313)
95 PRK14957 DNA polymerase III su 98.0 0.00017 3.7E-09 84.0 16.6 101 80-183 117-221 (546)
96 PRK12323 DNA polymerase III su 98.0 0.00011 2.3E-09 85.5 14.6 100 80-182 122-224 (700)
97 PF14516 AAA_35: AAA-like doma 98.0 0.00056 1.2E-08 75.9 20.0 181 2-190 34-246 (331)
98 PLN03025 replication factor C 98.0 0.00011 2.4E-09 81.4 14.4 157 2-180 37-197 (319)
99 cd00009 AAA The AAA+ (ATPases 97.9 6.1E-05 1.3E-09 73.1 10.6 103 1-121 21-131 (151)
100 TIGR00362 DnaA chromosomal rep 97.9 0.00026 5.7E-09 81.4 17.5 156 2-181 139-308 (405)
101 PRK07940 DNA polymerase III su 97.9 0.00023 4.9E-09 80.2 16.0 95 81-183 116-213 (394)
102 KOG2028 ATPase related to the 97.9 0.00011 2.4E-09 77.2 11.9 124 2-151 165-293 (554)
103 PRK14964 DNA polymerase III su 97.9 0.00023 5E-09 81.7 15.6 97 81-180 115-214 (491)
104 PRK04195 replication factor C 97.9 0.00023 5.1E-09 83.5 16.1 186 2-219 42-239 (482)
105 PRK08691 DNA polymerase III su 97.9 9E-05 2E-09 87.1 12.4 99 81-182 118-219 (709)
106 PRK12422 chromosomal replicati 97.9 0.00034 7.5E-09 80.3 16.8 152 2-177 144-307 (445)
107 PRK05707 DNA polymerase III su 97.9 0.00031 6.7E-09 77.3 15.7 96 82-183 106-203 (328)
108 PRK00440 rfc replication facto 97.9 0.0003 6.5E-09 78.5 15.8 158 2-181 41-201 (319)
109 PRK08116 hypothetical protein; 97.8 6.5E-05 1.4E-09 80.4 9.8 100 2-120 117-221 (268)
110 PRK13341 recombination factor 97.8 0.0002 4.2E-09 86.7 14.7 147 2-180 55-214 (725)
111 PRK00149 dnaA chromosomal repl 97.8 0.00024 5.1E-09 82.8 14.9 156 2-181 151-320 (450)
112 PRK06620 hypothetical protein; 97.8 0.00012 2.7E-09 75.4 10.6 134 2-180 47-186 (214)
113 PRK09112 DNA polymerase III su 97.8 0.00043 9.3E-09 76.9 15.5 99 81-184 140-241 (351)
114 PRK07994 DNA polymerase III su 97.8 0.00023 5E-09 84.3 14.0 101 80-183 117-220 (647)
115 PTZ00112 origin recognition co 97.8 0.0004 8.6E-09 82.3 15.5 215 2-230 784-1027(1164)
116 PRK14954 DNA polymerase III su 97.8 0.00027 5.7E-09 83.9 14.3 96 81-179 126-224 (620)
117 TIGR02397 dnaX_nterm DNA polym 97.8 0.00052 1.1E-08 77.8 16.4 101 81-184 116-219 (355)
118 PRK14951 DNA polymerase III su 97.8 0.00043 9.4E-09 81.8 15.8 99 81-182 123-224 (618)
119 PRK14958 DNA polymerase III su 97.8 0.00037 7.9E-09 81.4 15.0 98 81-181 118-218 (509)
120 TIGR00767 rho transcription te 97.8 3.8E-05 8.2E-10 84.3 6.4 90 2-94 171-267 (415)
121 PRK14086 dnaA chromosomal repl 97.8 0.0006 1.3E-08 79.6 16.4 155 2-180 317-485 (617)
122 PRK14959 DNA polymerase III su 97.7 0.00063 1.4E-08 79.9 16.1 103 81-186 118-224 (624)
123 PRK03992 proteasome-activating 97.7 0.00035 7.5E-09 79.4 13.8 145 2-177 168-337 (389)
124 COG1474 CDC6 Cdc6-related prot 97.7 0.0011 2.3E-08 74.0 17.2 175 2-183 45-238 (366)
125 PF00004 AAA: ATPase family as 97.7 0.00022 4.7E-09 67.8 10.2 23 2-24 1-23 (132)
126 TIGR02881 spore_V_K stage V sp 97.7 0.00027 5.8E-09 75.9 11.9 130 2-154 45-193 (261)
127 PRK14955 DNA polymerase III su 97.7 0.00017 3.6E-09 82.4 10.7 98 81-181 126-226 (397)
128 PRK14969 DNA polymerase III su 97.7 0.00038 8.2E-09 81.9 13.5 97 81-180 118-217 (527)
129 PRK14952 DNA polymerase III su 97.7 0.0014 3.1E-08 77.3 17.7 100 81-183 117-220 (584)
130 PRK14970 DNA polymerase III su 97.7 0.0009 1.9E-08 76.0 15.8 154 2-180 42-206 (367)
131 PRK05896 DNA polymerase III su 97.6 0.00086 1.9E-08 78.3 14.8 94 83-179 120-216 (605)
132 PTZ00361 26 proteosome regulat 97.6 0.00029 6.4E-09 80.0 10.8 130 2-155 220-370 (438)
133 TIGR02880 cbbX_cfxQ probable R 97.6 0.00084 1.8E-08 72.7 13.7 131 2-154 61-210 (284)
134 PLN00020 ribulose bisphosphate 97.6 0.0011 2.3E-08 71.8 13.9 150 1-178 150-333 (413)
135 PRK12377 putative replication 97.6 0.00033 7.2E-09 73.4 9.7 33 2-34 104-136 (248)
136 TIGR03689 pup_AAA proteasome A 97.6 0.00066 1.4E-08 78.3 12.9 131 2-153 219-379 (512)
137 PF12799 LRR_4: Leucine Rich r 97.6 6.5E-05 1.4E-09 55.2 3.1 39 723-763 2-40 (44)
138 COG0593 DnaA ATPase involved i 97.5 0.0015 3.2E-08 72.6 14.8 132 2-156 116-261 (408)
139 COG5238 RNA1 Ran GTPase-activa 97.5 1.1E-05 2.3E-10 81.4 -1.8 245 508-781 27-314 (388)
140 PRK14950 DNA polymerase III su 97.5 0.002 4.3E-08 77.3 16.9 100 81-183 119-221 (585)
141 PRK08181 transposase; Validate 97.5 0.00032 7E-09 74.5 9.0 33 2-34 109-141 (269)
142 CHL00181 cbbX CbbX; Provisiona 97.5 0.0022 4.7E-08 69.4 15.4 132 2-155 62-212 (287)
143 PRK09111 DNA polymerase III su 97.5 0.0029 6.2E-08 75.2 17.6 99 81-182 131-232 (598)
144 PF12799 LRR_4: Leucine Rich r 97.5 6.1E-05 1.3E-09 55.3 2.2 41 747-788 1-41 (44)
145 PRK14953 DNA polymerase III su 97.5 0.0026 5.6E-08 73.9 16.9 100 81-183 118-220 (486)
146 PRK08451 DNA polymerase III su 97.5 0.0013 2.9E-08 76.2 14.3 100 81-183 116-218 (535)
147 PRK07764 DNA polymerase III su 97.5 0.0033 7.2E-08 77.3 18.4 97 81-180 119-218 (824)
148 PTZ00454 26S protease regulato 97.5 0.00086 1.9E-08 75.7 12.4 150 2-179 182-353 (398)
149 PHA02544 44 clamp loader, smal 97.5 0.00093 2E-08 74.3 12.5 123 2-150 46-171 (316)
150 PRK07133 DNA polymerase III su 97.4 0.0023 5E-08 76.4 15.7 97 81-180 117-216 (725)
151 PRK14971 DNA polymerase III su 97.4 0.0052 1.1E-07 73.6 18.7 97 81-180 120-219 (614)
152 PRK06526 transposase; Provisio 97.4 0.00027 5.8E-09 74.8 7.1 25 2-26 101-125 (254)
153 CHL00176 ftsH cell division pr 97.4 0.0027 5.9E-08 76.0 16.2 145 2-175 219-386 (638)
154 PRK14948 DNA polymerase III su 97.4 0.0022 4.7E-08 76.8 14.4 100 81-183 120-222 (620)
155 COG3267 ExeA Type II secretory 97.4 0.0058 1.3E-07 62.3 15.1 175 1-185 53-247 (269)
156 PRK06305 DNA polymerase III su 97.4 0.0033 7.1E-08 72.7 15.4 97 81-180 120-219 (451)
157 PRK09183 transposase/IS protei 97.4 0.0006 1.3E-08 72.7 8.6 33 2-34 105-137 (259)
158 TIGR02903 spore_lon_C ATP-depe 97.3 0.0016 3.5E-08 78.1 13.1 112 72-186 282-398 (615)
159 PF01695 IstB_IS21: IstB-like 97.3 0.00026 5.7E-09 70.7 5.4 33 2-34 50-82 (178)
160 PRK07952 DNA replication prote 97.3 0.00093 2E-08 69.9 9.5 72 2-93 102-173 (244)
161 KOG4579 Leucine-rich repeat (L 97.3 1.1E-05 2.5E-10 72.8 -4.1 98 353-450 30-134 (177)
162 PRK10536 hypothetical protein; 97.3 0.00096 2.1E-08 69.1 9.1 116 1-121 76-214 (262)
163 KOG3665 ZYG-1-like serine/thre 97.3 7.3E-05 1.6E-09 90.0 0.8 110 485-595 147-263 (699)
164 PRK08769 DNA polymerase III su 97.3 0.0056 1.2E-07 66.8 14.8 95 81-184 112-209 (319)
165 cd01133 F1-ATPase_beta F1 ATP 97.3 0.00078 1.7E-08 71.0 7.9 90 2-94 72-175 (274)
166 PRK06647 DNA polymerase III su 97.2 0.006 1.3E-07 72.2 16.1 99 81-182 118-219 (563)
167 smart00382 AAA ATPases associa 97.2 0.001 2.2E-08 63.8 8.1 33 1-33 4-36 (148)
168 PRK06921 hypothetical protein; 97.2 0.00097 2.1E-08 71.2 8.5 33 2-34 120-153 (266)
169 TIGR01241 FtsH_fam ATP-depende 97.2 0.0025 5.4E-08 75.2 12.4 147 2-177 91-260 (495)
170 KOG1644 U2-associated snRNP A' 97.2 0.00067 1.5E-08 66.1 6.1 98 353-450 22-124 (233)
171 PRK06090 DNA polymerase III su 97.2 0.017 3.6E-07 63.0 17.4 93 81-184 107-202 (319)
172 KOG3665 ZYG-1-like serine/thre 97.2 0.00019 4.1E-09 86.5 2.7 133 534-667 122-264 (699)
173 CHL00195 ycf46 Ycf46; Provisio 97.2 0.0027 5.8E-08 73.5 11.8 127 2-155 262-408 (489)
174 KOG0989 Replication factor C, 97.1 0.0021 4.5E-08 66.9 9.2 165 2-183 60-231 (346)
175 PRK06835 DNA replication prote 97.1 0.0018 4E-08 71.0 9.4 33 2-34 186-218 (329)
176 COG1373 Predicted ATPase (AAA+ 97.1 0.0044 9.5E-08 70.4 12.5 121 1-148 39-163 (398)
177 COG5238 RNA1 Ran GTPase-activa 97.1 0.00014 3.1E-09 73.4 0.5 15 652-666 119-133 (388)
178 PRK06871 DNA polymerase III su 97.1 0.016 3.5E-07 63.3 16.2 93 81-181 106-201 (325)
179 PHA00729 NTP-binding motif con 97.1 0.0015 3.3E-08 66.6 7.6 23 2-24 20-42 (226)
180 PRK14965 DNA polymerase III su 97.1 0.0077 1.7E-07 71.9 14.7 100 81-183 118-221 (576)
181 PRK08939 primosomal protein Dn 97.0 0.0016 3.4E-08 71.0 8.1 96 2-119 159-260 (306)
182 KOG4579 Leucine-rich repeat (L 97.0 7.6E-05 1.6E-09 67.7 -1.8 60 721-782 76-135 (177)
183 KOG1947 Leucine rich repeat pr 97.0 0.00017 3.6E-09 85.9 0.4 186 485-690 242-441 (482)
184 PF13191 AAA_16: AAA ATPase do 97.0 0.00066 1.4E-08 68.9 4.7 26 1-26 26-51 (185)
185 COG1222 RPT1 ATP-dependent 26S 97.0 0.0083 1.8E-07 64.0 12.6 142 2-177 188-357 (406)
186 PF05673 DUF815: Protein of un 97.0 0.022 4.7E-07 58.6 15.1 25 2-26 55-79 (249)
187 PRK05563 DNA polymerase III su 97.0 0.015 3.2E-07 69.2 16.2 97 81-180 118-217 (559)
188 PRK12608 transcription termina 97.0 0.0017 3.7E-08 71.1 7.7 90 2-94 136-232 (380)
189 COG1484 DnaC DNA replication p 96.9 0.0028 6E-08 67.2 8.5 71 2-93 108-178 (254)
190 PF04665 Pox_A32: Poxvirus A32 96.9 0.0014 3.1E-08 67.6 5.8 33 2-34 16-48 (241)
191 TIGR03345 VI_ClpV1 type VI sec 96.9 0.0074 1.6E-07 75.3 13.0 129 2-152 211-363 (852)
192 PRK07993 DNA polymerase III su 96.9 0.02 4.3E-07 63.3 14.9 95 81-183 107-204 (334)
193 PRK06964 DNA polymerase III su 96.9 0.064 1.4E-06 59.2 18.6 93 81-184 131-226 (342)
194 KOG1644 U2-associated snRNP A' 96.8 0.0021 4.6E-08 62.7 6.0 77 373-450 21-99 (233)
195 TIGR02639 ClpA ATP-dependent C 96.8 0.0065 1.4E-07 75.2 11.9 128 2-152 206-358 (731)
196 TIGR01243 CDC48 AAA family ATP 96.8 0.0092 2E-07 74.1 13.2 147 2-177 490-657 (733)
197 PRK08699 DNA polymerase III su 96.8 0.036 7.8E-07 61.1 16.3 88 82-179 113-202 (325)
198 KOG2543 Origin recognition com 96.8 0.025 5.4E-07 60.9 14.2 143 2-152 33-193 (438)
199 PRK08058 DNA polymerase III su 96.8 0.017 3.7E-07 64.1 14.0 70 81-151 109-181 (329)
200 PF02562 PhoH: PhoH-like prote 96.8 0.0042 9.2E-08 62.7 8.3 113 1-121 21-157 (205)
201 PTZ00202 tuzin; Provisional 96.8 0.013 2.9E-07 64.7 12.4 137 1-152 288-434 (550)
202 COG2255 RuvB Holliday junction 96.8 0.0092 2E-07 61.6 10.4 149 2-184 55-224 (332)
203 PRK07399 DNA polymerase III su 96.8 0.03 6.5E-07 61.4 15.3 96 81-183 123-221 (314)
204 KOG2739 Leucine-rich acidic nu 96.8 0.00089 1.9E-08 68.3 3.0 85 717-803 60-155 (260)
205 KOG0741 AAA+-type ATPase [Post 96.7 0.012 2.6E-07 65.6 11.5 124 2-152 541-686 (744)
206 PF05621 TniB: Bacterial TniB 96.7 0.026 5.7E-07 59.9 13.7 176 2-183 64-261 (302)
207 PRK04132 replication factor C 96.7 0.018 3.8E-07 70.6 14.2 153 7-182 574-730 (846)
208 cd01120 RecA-like_NTPases RecA 96.7 0.0053 1.1E-07 60.6 8.2 34 1-34 1-34 (165)
209 KOG0735 AAA+-type ATPase [Post 96.7 0.021 4.5E-07 66.1 13.4 159 2-183 434-616 (952)
210 KOG1947 Leucine rich repeat pr 96.7 0.00036 7.8E-09 82.9 -0.8 110 533-642 187-308 (482)
211 TIGR02640 gas_vesic_GvpN gas v 96.7 0.019 4.1E-07 61.6 12.5 24 2-25 24-47 (262)
212 PRK05541 adenylylsulfate kinas 96.6 0.0058 1.3E-07 61.3 7.6 34 1-34 9-42 (176)
213 PF13207 AAA_17: AAA domain; P 96.6 0.0015 3.3E-08 60.9 3.1 23 1-23 1-23 (121)
214 TIGR01243 CDC48 AAA family ATP 96.6 0.017 3.7E-07 71.8 13.2 148 2-179 215-383 (733)
215 PRK04296 thymidine kinase; Pro 96.5 0.0056 1.2E-07 62.1 7.1 111 1-121 4-117 (190)
216 PRK08118 topology modulation p 96.5 0.002 4.3E-08 63.8 3.7 31 2-32 4-37 (167)
217 COG1618 Predicted nucleotide k 96.5 0.0028 6E-08 59.7 4.3 37 2-38 8-46 (179)
218 PF07728 AAA_5: AAA domain (dy 96.5 0.0024 5.1E-08 61.3 4.1 22 2-23 2-23 (139)
219 KOG0730 AAA+-type ATPase [Post 96.5 0.014 3E-07 67.3 10.1 128 2-157 471-620 (693)
220 PF01583 APS_kinase: Adenylyls 96.5 0.0018 3.9E-08 62.2 2.7 34 1-34 4-37 (156)
221 PRK10733 hflB ATP-dependent me 96.5 0.022 4.9E-07 69.1 12.8 129 2-154 188-337 (644)
222 cd01131 PilT Pilus retraction 96.4 0.01 2.2E-07 60.7 8.2 108 1-122 3-111 (198)
223 TIGR00602 rad24 checkpoint pro 96.4 0.013 2.8E-07 69.7 10.0 24 1-24 112-135 (637)
224 COG4608 AppF ABC-type oligopep 96.4 0.013 2.9E-07 60.8 8.7 145 1-149 41-199 (268)
225 cd00544 CobU Adenosylcobinamid 96.4 0.016 3.4E-07 57.2 9.0 80 1-91 1-82 (169)
226 PF13177 DNA_pol3_delta2: DNA 96.4 0.022 4.8E-07 56.0 9.9 59 81-139 101-161 (162)
227 TIGR03346 chaperone_ClpB ATP-d 96.4 0.034 7.3E-07 70.1 13.9 130 2-152 197-349 (852)
228 CHL00095 clpC Clp protease ATP 96.3 0.029 6.3E-07 70.4 13.1 129 2-151 203-353 (821)
229 KOG0991 Replication factor C, 96.3 0.03 6.6E-07 55.8 10.2 24 2-25 51-74 (333)
230 PRK10865 protein disaggregatio 96.2 0.034 7.3E-07 69.8 12.9 24 2-25 202-225 (857)
231 TIGR01359 UMP_CMP_kin_fam UMP- 96.2 0.033 7.1E-07 56.3 10.5 23 1-23 1-23 (183)
232 PRK07261 topology modulation p 96.2 0.016 3.4E-07 57.7 7.9 22 2-23 3-24 (171)
233 PRK11331 5-methylcytosine-spec 96.1 0.013 2.8E-07 66.0 7.5 33 2-34 197-231 (459)
234 PF07693 KAP_NTPase: KAP famil 96.1 0.21 4.6E-06 55.7 17.4 58 1-58 22-81 (325)
235 PRK10865 protein disaggregatio 96.1 0.064 1.4E-06 67.3 14.4 24 2-25 601-624 (857)
236 TIGR00763 lon ATP-dependent pr 96.1 0.027 5.9E-07 70.2 11.0 27 1-27 349-375 (775)
237 PRK06762 hypothetical protein; 96.1 0.031 6.8E-07 55.4 9.5 23 1-23 4-26 (166)
238 KOG0744 AAA+-type ATPase [Post 96.1 0.029 6.3E-07 58.9 9.2 34 1-34 179-216 (423)
239 cd02027 APSK Adenosine 5'-phos 96.0 0.04 8.6E-07 53.4 9.6 24 1-24 1-24 (149)
240 PF13671 AAA_33: AAA domain; P 96.0 0.0086 1.9E-07 57.7 4.8 24 1-24 1-24 (143)
241 PF00448 SRP54: SRP54-type pro 96.0 0.021 4.5E-07 58.0 7.6 34 1-34 3-36 (196)
242 KOG0733 Nuclear AAA ATPase (VC 95.9 0.047 1E-06 62.2 10.7 25 2-26 226-250 (802)
243 COG0466 Lon ATP-dependent Lon 95.9 0.035 7.6E-07 64.7 9.8 136 1-153 352-509 (782)
244 COG2884 FtsE Predicted ATPase 95.9 0.037 8E-07 53.8 8.2 55 71-127 144-204 (223)
245 cd03115 SRP The signal recogni 95.8 0.043 9.4E-07 54.8 9.3 26 1-26 2-27 (173)
246 COG2812 DnaX DNA polymerase II 95.8 0.054 1.2E-06 62.4 11.0 95 81-177 118-214 (515)
247 KOG0729 26S proteasome regulat 95.8 0.042 9.1E-07 55.8 8.7 91 2-120 214-326 (435)
248 TIGR02237 recomb_radB DNA repa 95.8 0.011 2.5E-07 61.1 5.2 34 1-34 14-47 (209)
249 PRK11034 clpA ATP-dependent Cl 95.8 0.037 8.1E-07 67.7 10.2 130 2-152 210-362 (758)
250 KOG2739 Leucine-rich acidic nu 95.8 0.0064 1.4E-07 62.2 2.8 85 603-687 63-154 (260)
251 PF13238 AAA_18: AAA domain; P 95.8 0.008 1.7E-07 56.6 3.5 22 2-23 1-22 (129)
252 PRK09361 radB DNA repair and r 95.8 0.014 3E-07 61.2 5.5 34 1-34 25-58 (225)
253 PF00485 PRK: Phosphoribulokin 95.7 0.0074 1.6E-07 61.6 3.3 26 1-26 1-26 (194)
254 COG1223 Predicted ATPase (AAA+ 95.6 0.085 1.8E-06 53.7 10.0 144 2-176 154-318 (368)
255 PF00406 ADK: Adenylate kinase 95.6 0.038 8.1E-07 53.8 7.6 88 4-102 1-94 (151)
256 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.6 0.037 8.1E-07 53.2 7.4 98 1-124 28-131 (144)
257 PRK09280 F0F1 ATP synthase sub 95.6 0.031 6.8E-07 63.5 7.8 90 2-94 147-250 (463)
258 PRK14722 flhF flagellar biosyn 95.6 0.085 1.9E-06 58.7 11.0 27 1-27 139-165 (374)
259 PRK05800 cobU adenosylcobinami 95.6 0.017 3.8E-07 57.1 5.0 79 1-91 3-85 (170)
260 TIGR03574 selen_PSTK L-seryl-t 95.6 0.073 1.6E-06 56.7 10.2 26 1-26 1-26 (249)
261 KOG0734 AAA+-type ATPase conta 95.6 0.079 1.7E-06 59.4 10.3 123 2-154 340-486 (752)
262 cd02019 NK Nucleoside/nucleoti 95.5 0.013 2.9E-07 48.1 3.5 23 1-23 1-23 (69)
263 cd03223 ABCD_peroxisomal_ALDP 95.5 0.046 9.9E-07 54.1 8.0 23 1-23 29-51 (166)
264 KOG0651 26S proteasome regulat 95.5 0.063 1.4E-06 56.2 8.9 26 1-26 168-193 (388)
265 cd03238 ABC_UvrA The excision 95.5 0.044 9.5E-07 54.5 7.7 20 1-20 23-42 (176)
266 TIGR02639 ClpA ATP-dependent C 95.5 0.12 2.6E-06 64.1 13.2 23 2-24 487-509 (731)
267 KOG0731 AAA+-type ATPase conta 95.5 0.12 2.6E-06 61.8 12.3 147 2-180 347-521 (774)
268 COG2607 Predicted ATPase (AAA+ 95.5 0.1 2.3E-06 52.7 10.0 91 2-121 88-184 (287)
269 PTZ00088 adenylate kinase 1; P 95.5 0.036 7.8E-07 57.7 7.1 92 2-101 9-105 (229)
270 cd01394 radB RadB. The archaea 95.4 0.027 5.8E-07 58.8 6.3 34 1-34 21-54 (218)
271 COG0464 SpoVK ATPases of the A 95.4 0.084 1.8E-06 62.6 11.2 128 2-156 279-427 (494)
272 PRK11889 flhF flagellar biosyn 95.4 0.094 2E-06 58.0 10.4 26 1-26 243-268 (436)
273 PRK12724 flagellar biosynthesi 95.4 0.079 1.7E-06 59.4 10.0 23 1-23 225-247 (432)
274 TIGR03345 VI_ClpV1 type VI sec 95.4 0.061 1.3E-06 67.3 10.2 24 2-25 599-622 (852)
275 cd01124 KaiC KaiC is a circadi 95.4 0.055 1.2E-06 54.8 8.2 34 1-34 1-34 (187)
276 PF07726 AAA_3: ATPase family 95.4 0.011 2.3E-07 54.2 2.6 28 2-29 2-29 (131)
277 COG0470 HolB ATPase involved i 95.4 0.11 2.5E-06 57.9 11.6 63 81-144 108-173 (325)
278 PRK00889 adenylylsulfate kinas 95.4 0.048 1E-06 54.6 7.6 25 1-25 6-30 (175)
279 PRK06067 flagellar accessory p 95.4 0.045 9.8E-07 57.8 7.7 34 1-34 27-60 (234)
280 cd00561 CobA_CobO_BtuR ATP:cor 95.3 0.027 5.9E-07 54.4 5.2 115 1-121 4-139 (159)
281 cd01135 V_A-ATPase_B V/A-type 95.3 0.05 1.1E-06 57.4 7.5 89 2-94 72-178 (276)
282 PRK00771 signal recognition pa 95.3 0.077 1.7E-06 60.6 9.7 26 1-26 97-122 (437)
283 KOG0743 AAA+-type ATPase [Post 95.3 0.22 4.7E-06 55.4 12.6 146 3-187 239-413 (457)
284 PRK08356 hypothetical protein; 95.3 0.093 2E-06 53.5 9.4 20 1-20 7-26 (195)
285 TIGR01039 atpD ATP synthase, F 95.3 0.052 1.1E-06 61.5 8.0 90 2-94 146-249 (461)
286 PTZ00301 uridine kinase; Provi 95.3 0.013 2.7E-07 60.1 3.0 27 1-27 5-31 (210)
287 cd03214 ABC_Iron-Siderophores_ 95.3 0.064 1.4E-06 53.9 8.1 121 1-123 27-161 (180)
288 PF00006 ATP-synt_ab: ATP synt 95.2 0.04 8.7E-07 56.5 6.5 86 2-93 18-116 (215)
289 cd01393 recA_like RecA is a b 95.2 0.065 1.4E-06 56.2 8.4 34 1-34 21-60 (226)
290 COG0542 clpA ATP-binding subun 95.2 0.068 1.5E-06 64.2 9.3 91 3-106 525-619 (786)
291 TIGR03346 chaperone_ClpB ATP-d 95.2 0.061 1.3E-06 67.8 9.5 25 2-26 598-622 (852)
292 KOG0733 Nuclear AAA ATPase (VC 95.2 0.23 5E-06 56.9 12.7 125 2-153 548-693 (802)
293 PRK12597 F0F1 ATP synthase sub 95.2 0.051 1.1E-06 62.1 7.9 88 2-93 146-248 (461)
294 COG1121 ZnuC ABC-type Mn/Zn tr 95.2 0.032 6.9E-07 58.0 5.7 52 72-125 147-204 (254)
295 PRK14974 cell division protein 95.2 0.087 1.9E-06 58.0 9.4 26 1-26 142-167 (336)
296 PF00910 RNA_helicase: RNA hel 95.1 0.013 2.8E-07 53.1 2.4 25 2-26 1-25 (107)
297 KOG2123 Uncharacterized conser 95.1 0.00086 1.9E-08 68.3 -5.7 80 373-453 21-102 (388)
298 TIGR02858 spore_III_AA stage I 95.1 0.07 1.5E-06 57.0 8.2 112 2-123 114-232 (270)
299 cd03216 ABC_Carb_Monos_I This 95.1 0.055 1.2E-06 53.4 6.9 113 1-124 28-146 (163)
300 COG0563 Adk Adenylate kinase a 95.1 0.066 1.4E-06 53.3 7.4 21 2-22 3-23 (178)
301 cd03222 ABC_RNaseL_inhibitor T 95.1 0.075 1.6E-06 52.9 7.8 102 1-124 27-136 (177)
302 KOG2228 Origin recognition com 95.0 0.16 3.5E-06 54.0 10.2 149 2-152 52-219 (408)
303 PRK11034 clpA ATP-dependent Cl 95.0 0.12 2.6E-06 63.4 10.9 23 2-24 491-513 (758)
304 COG0572 Udk Uridine kinase [Nu 95.0 0.021 4.6E-07 57.6 3.7 26 1-26 10-35 (218)
305 TIGR01420 pilT_fam pilus retra 95.0 0.056 1.2E-06 60.4 7.5 107 1-121 124-231 (343)
306 cd01129 PulE-GspE PulE/GspE Th 95.0 0.077 1.7E-06 56.8 8.2 89 1-103 82-170 (264)
307 PF13604 AAA_30: AAA domain; P 95.0 0.061 1.3E-06 54.8 7.1 103 1-122 20-133 (196)
308 COG1875 NYN ribonuclease and A 95.0 0.097 2.1E-06 56.2 8.5 36 83-121 352-389 (436)
309 PRK05480 uridine/cytidine kina 95.0 0.017 3.7E-07 59.8 3.0 23 1-23 8-30 (209)
310 TIGR00455 apsK adenylylsulfate 95.0 0.094 2E-06 53.0 8.4 24 1-24 20-43 (184)
311 cd01125 repA Hexameric Replica 95.0 0.15 3.2E-06 54.0 10.2 24 1-24 3-26 (239)
312 PRK03839 putative kinase; Prov 95.0 0.02 4.3E-07 57.7 3.4 25 1-25 2-26 (180)
313 PRK04040 adenylate kinase; Pro 94.9 0.022 4.8E-07 57.5 3.6 24 1-24 4-27 (188)
314 cd01123 Rad51_DMC1_radA Rad51_ 94.9 0.061 1.3E-06 56.9 7.2 34 1-34 21-60 (235)
315 PRK08972 fliI flagellum-specif 94.9 0.04 8.7E-07 62.1 6.0 87 2-94 165-264 (444)
316 cd01121 Sms Sms (bacterial rad 94.9 0.05 1.1E-06 61.0 6.8 34 1-34 84-117 (372)
317 COG1428 Deoxynucleoside kinase 94.9 0.018 4E-07 57.2 2.9 24 1-24 6-29 (216)
318 PRK12723 flagellar biosynthesi 94.9 0.14 3E-06 57.6 10.2 24 1-24 176-199 (388)
319 cd02028 UMPK_like Uridine mono 94.9 0.032 7E-07 55.9 4.7 25 1-25 1-25 (179)
320 PRK00625 shikimate kinase; Pro 94.9 0.023 5E-07 56.4 3.5 23 2-24 3-25 (173)
321 PRK08233 hypothetical protein; 94.8 0.018 3.8E-07 58.2 2.7 24 1-24 5-28 (182)
322 PRK12726 flagellar biosynthesi 94.8 0.17 3.6E-06 55.9 10.2 34 1-34 208-241 (407)
323 cd03228 ABCC_MRP_Like The MRP 94.8 0.12 2.6E-06 51.4 8.7 113 1-124 30-159 (171)
324 TIGR00235 udk uridine kinase. 94.8 0.02 4.3E-07 59.1 3.1 24 1-24 8-31 (207)
325 PF07724 AAA_2: AAA domain (Cd 94.8 0.036 7.7E-07 54.9 4.7 32 2-33 6-38 (171)
326 PRK07667 uridine kinase; Provi 94.8 0.031 6.6E-07 56.9 4.4 26 1-26 19-44 (193)
327 cd04121 Rab40 Rab40 subfamily. 94.8 0.16 3.5E-06 51.4 9.6 20 2-21 9-28 (189)
328 PRK10867 signal recognition pa 94.8 0.13 2.8E-06 58.7 9.6 26 1-26 102-127 (433)
329 cd00071 GMPK Guanosine monopho 94.8 0.023 5.1E-07 54.1 3.2 26 1-26 1-26 (137)
330 KOG2227 Pre-initiation complex 94.8 0.44 9.4E-06 53.1 13.0 147 2-154 178-340 (529)
331 cd03247 ABCC_cytochrome_bd The 94.8 0.15 3.2E-06 51.3 9.1 33 1-34 30-62 (178)
332 PRK06696 uridine kinase; Valid 94.7 0.029 6.3E-07 58.6 4.1 26 1-26 24-49 (223)
333 PRK00279 adk adenylate kinase; 94.7 0.11 2.3E-06 54.0 8.2 22 2-23 3-24 (215)
334 TIGR03499 FlhF flagellar biosy 94.7 0.097 2.1E-06 56.7 8.1 25 1-25 196-220 (282)
335 KOG2123 Uncharacterized conser 94.7 0.002 4.3E-08 65.7 -4.5 97 349-445 18-123 (388)
336 COG1126 GlnQ ABC-type polar am 94.7 0.29 6.2E-06 49.0 10.3 56 71-126 143-202 (240)
337 smart00534 MUTSac ATPase domai 94.6 0.019 4.1E-07 58.0 2.2 21 1-21 1-21 (185)
338 cd01132 F1_ATPase_alpha F1 ATP 94.6 0.092 2E-06 55.4 7.3 95 2-101 72-181 (274)
339 PRK14529 adenylate kinase; Pro 94.6 0.13 2.7E-06 53.2 8.2 91 2-100 3-95 (223)
340 cd02023 UMPK Uridine monophosp 94.6 0.028 6.1E-07 57.6 3.4 23 1-23 1-23 (198)
341 cd02025 PanK Pantothenate kina 94.6 0.027 5.9E-07 58.4 3.4 24 1-24 1-24 (220)
342 TIGR02012 tigrfam_recA protein 94.6 0.06 1.3E-06 58.6 6.1 34 1-34 57-90 (321)
343 cd02024 NRK1 Nicotinamide ribo 94.6 0.027 5.9E-07 56.4 3.2 23 1-23 1-23 (187)
344 COG4088 Predicted nucleotide k 94.6 0.059 1.3E-06 53.0 5.3 25 2-26 4-28 (261)
345 PRK12678 transcription termina 94.6 0.053 1.2E-06 62.2 5.8 91 2-95 419-516 (672)
346 PF08433 KTI12: Chromatin asso 94.5 0.069 1.5E-06 57.1 6.4 25 1-25 3-27 (270)
347 cd02021 GntK Gluconate kinase 94.5 0.13 2.7E-06 50.0 7.8 22 1-22 1-22 (150)
348 PRK14526 adenylate kinase; Pro 94.5 0.12 2.7E-06 53.0 8.0 22 2-23 3-24 (211)
349 PF13481 AAA_25: AAA domain; P 94.5 0.03 6.4E-07 57.2 3.5 25 1-25 34-58 (193)
350 TIGR01351 adk adenylate kinase 94.5 0.094 2E-06 54.3 7.2 22 2-23 2-23 (210)
351 PF00560 LRR_1: Leucine Rich R 94.5 0.012 2.6E-07 35.8 0.3 20 748-767 1-20 (22)
352 TIGR00064 ftsY signal recognit 94.5 0.11 2.4E-06 55.8 7.8 33 1-33 74-106 (272)
353 PRK13947 shikimate kinase; Pro 94.5 0.031 6.8E-07 55.7 3.4 25 2-26 4-28 (171)
354 PRK10787 DNA-binding ATP-depen 94.4 0.13 2.9E-06 63.5 9.4 27 1-27 351-377 (784)
355 cd00983 recA RecA is a bacter 94.4 0.068 1.5E-06 58.2 6.1 34 1-34 57-90 (325)
356 TIGR00959 ffh signal recogniti 94.4 0.19 4E-06 57.4 9.8 24 1-24 101-124 (428)
357 TIGR03877 thermo_KaiC_1 KaiC d 94.4 0.14 3E-06 54.1 8.2 34 1-34 23-56 (237)
358 cd03230 ABC_DR_subfamily_A Thi 94.4 0.14 3E-06 51.1 7.8 113 1-124 28-159 (173)
359 cd03283 ABC_MutS-like MutS-lik 94.3 0.11 2.3E-06 53.1 7.1 22 1-22 27-48 (199)
360 cd03246 ABCC_Protease_Secretio 94.3 0.11 2.3E-06 52.0 6.9 33 1-34 30-62 (173)
361 CHL00206 ycf2 Ycf2; Provisiona 94.3 0.34 7.4E-06 63.3 12.6 22 2-23 1633-1654(2281)
362 PRK08533 flagellar accessory p 94.3 0.19 4.2E-06 52.6 9.0 33 1-34 26-59 (230)
363 KOG1969 DNA replication checkp 94.3 0.11 2.3E-06 60.8 7.4 70 1-94 328-399 (877)
364 TIGR02902 spore_lonB ATP-depen 94.3 0.19 4E-06 59.7 9.9 22 2-23 89-110 (531)
365 PRK06547 hypothetical protein; 94.3 0.035 7.5E-07 55.1 3.2 23 1-23 17-39 (172)
366 KOG0728 26S proteasome regulat 94.3 1.1 2.4E-05 45.4 13.5 121 2-152 184-331 (404)
367 TIGR03305 alt_F1F0_F1_bet alte 94.2 0.095 2.1E-06 59.5 6.9 89 2-94 141-244 (449)
368 PRK00131 aroK shikimate kinase 94.2 0.036 7.8E-07 55.5 3.3 24 1-24 6-29 (175)
369 cd01122 GP4d_helicase GP4d_hel 94.2 0.33 7.2E-06 52.5 11.1 34 1-34 32-66 (271)
370 cd01130 VirB11-like_ATPase Typ 94.2 0.067 1.5E-06 54.1 5.3 92 1-101 27-119 (186)
371 PF03969 AFG1_ATPase: AFG1-lik 94.2 0.1 2.2E-06 58.3 7.0 99 2-121 65-168 (362)
372 TIGR00176 mobB molybdopterin-g 94.2 0.053 1.2E-06 52.7 4.3 26 1-26 1-26 (155)
373 PRK09354 recA recombinase A; P 94.2 0.086 1.9E-06 57.9 6.3 34 1-34 62-95 (349)
374 CHL00095 clpC Clp protease ATP 94.2 0.15 3.2E-06 64.2 9.2 24 2-25 542-565 (821)
375 COG1120 FepC ABC-type cobalami 94.2 0.06 1.3E-06 56.3 4.8 54 72-126 146-205 (258)
376 COG0468 RecA RecA/RadA recombi 94.2 0.094 2E-06 55.8 6.4 35 1-35 62-96 (279)
377 PF13306 LRR_5: Leucine rich r 94.2 0.18 3.9E-06 47.3 7.8 83 341-425 3-90 (129)
378 cd01428 ADK Adenylate kinase ( 94.2 0.29 6.2E-06 49.9 9.9 23 1-23 1-23 (194)
379 PRK14528 adenylate kinase; Pro 94.2 0.15 3.3E-06 51.4 7.7 22 2-23 4-25 (186)
380 PF13306 LRR_5: Leucine rich r 94.2 0.11 2.3E-06 48.9 6.3 81 578-662 31-112 (129)
381 cd00267 ABC_ATPase ABC (ATP-bi 94.1 0.087 1.9E-06 51.6 5.7 113 1-125 27-145 (157)
382 COG2274 SunT ABC-type bacterio 94.1 0.083 1.8E-06 64.2 6.6 48 74-124 619-673 (709)
383 TIGR02782 TrbB_P P-type conjug 94.1 0.081 1.7E-06 57.7 6.0 86 2-100 135-222 (299)
384 COG1124 DppF ABC-type dipeptid 94.1 0.041 8.9E-07 55.9 3.3 21 1-21 35-55 (252)
385 KOG2035 Replication factor C, 94.1 1.4 3.1E-05 45.7 14.0 135 85-221 130-282 (351)
386 PRK14527 adenylate kinase; Pro 94.0 0.12 2.6E-06 52.6 6.6 23 1-23 8-30 (191)
387 PRK03846 adenylylsulfate kinas 94.0 0.055 1.2E-06 55.4 4.2 34 1-34 26-59 (198)
388 cd03232 ABC_PDR_domain2 The pl 94.0 0.23 5.1E-06 50.5 8.8 22 1-22 35-56 (192)
389 TIGR01069 mutS2 MutS2 family p 94.0 0.08 1.7E-06 65.3 6.2 113 81-203 401-521 (771)
390 cd02020 CMPK Cytidine monophos 94.0 0.049 1.1E-06 52.6 3.6 23 1-23 1-23 (147)
391 PRK07132 DNA polymerase III su 94.0 1.4 3.1E-05 47.8 15.1 94 81-183 89-185 (299)
392 COG0396 sufC Cysteine desulfur 94.0 0.17 3.6E-06 51.1 7.1 60 71-130 151-214 (251)
393 COG0529 CysC Adenylylsulfate k 94.0 0.062 1.3E-06 51.7 4.0 30 1-30 25-54 (197)
394 cd03217 ABC_FeS_Assembly ABC-t 93.9 0.16 3.4E-06 52.1 7.4 22 1-22 28-49 (200)
395 PRK12727 flagellar biosynthesi 93.9 0.13 2.9E-06 59.1 7.3 26 1-26 352-377 (559)
396 PF12775 AAA_7: P-loop contain 93.9 0.048 1E-06 58.5 3.6 23 2-24 36-58 (272)
397 COG1066 Sms Predicted ATP-depe 93.9 0.13 2.9E-06 56.2 6.9 84 1-93 95-179 (456)
398 PF03266 NTPase_1: NTPase; In 93.9 0.069 1.5E-06 52.7 4.4 24 2-25 2-25 (168)
399 COG5635 Predicted NTPase (NACH 93.9 0.46 1E-05 59.8 12.9 194 2-204 225-449 (824)
400 PRK05922 type III secretion sy 93.9 0.13 2.7E-06 58.4 7.0 87 2-94 160-259 (434)
401 PF10443 RNA12: RNA12 protein; 93.9 1.5 3.2E-05 49.2 15.0 105 83-188 149-283 (431)
402 PRK06217 hypothetical protein; 93.9 0.045 9.7E-07 55.3 3.2 23 2-24 4-26 (183)
403 PRK11823 DNA repair protein Ra 93.9 0.13 2.7E-06 59.6 7.2 34 1-34 82-115 (446)
404 COG0488 Uup ATPase components 93.8 0.15 3.4E-06 59.7 7.8 56 75-138 450-511 (530)
405 PRK10416 signal recognition pa 93.8 0.18 4E-06 55.3 8.0 26 1-26 116-141 (318)
406 PRK08149 ATP synthase SpaL; Va 93.8 0.15 3.3E-06 57.7 7.5 88 1-94 153-253 (428)
407 PRK13949 shikimate kinase; Pro 93.8 0.051 1.1E-06 53.8 3.3 23 2-24 4-26 (169)
408 PRK08927 fliI flagellum-specif 93.8 0.12 2.7E-06 58.5 6.7 86 2-93 161-259 (442)
409 TIGR03575 selen_PSTK_euk L-ser 93.8 0.17 3.6E-06 55.7 7.5 24 1-24 1-24 (340)
410 PRK01184 hypothetical protein; 93.7 0.12 2.7E-06 52.1 6.1 20 1-21 3-22 (184)
411 CHL00060 atpB ATP synthase CF1 93.7 0.2 4.3E-06 57.4 8.2 89 2-94 164-274 (494)
412 PF00158 Sigma54_activat: Sigm 93.7 0.19 4.1E-06 49.7 7.1 21 2-22 25-45 (168)
413 CHL00059 atpA ATP synthase CF1 93.7 0.16 3.4E-06 58.0 7.3 88 2-94 144-245 (485)
414 cd00227 CPT Chloramphenicol (C 93.7 0.055 1.2E-06 54.1 3.4 25 1-25 4-28 (175)
415 PRK05703 flhF flagellar biosyn 93.7 0.17 3.8E-06 57.9 7.8 34 1-34 223-258 (424)
416 COG0055 AtpD F0F1-type ATP syn 93.7 0.15 3.2E-06 54.9 6.5 101 2-105 150-268 (468)
417 PF03215 Rad17: Rad17 cell cyc 93.7 0.32 6.9E-06 57.0 10.0 31 1-33 47-77 (519)
418 COG0194 Gmk Guanylate kinase [ 93.6 0.058 1.3E-06 52.7 3.3 23 1-23 6-28 (191)
419 cd00464 SK Shikimate kinase (S 93.6 0.06 1.3E-06 52.5 3.5 23 2-24 2-24 (154)
420 PF03205 MobB: Molybdopterin g 93.6 0.082 1.8E-06 50.4 4.3 34 1-34 2-36 (140)
421 KOG2004 Mitochondrial ATP-depe 93.6 0.067 1.5E-06 62.2 4.2 28 1-28 440-467 (906)
422 PRK04328 hypothetical protein; 93.6 0.17 3.7E-06 53.8 7.1 34 1-34 25-58 (249)
423 TIGR03881 KaiC_arch_4 KaiC dom 93.6 0.21 4.5E-06 52.5 7.7 34 1-34 22-55 (229)
424 TIGR02322 phosphon_PhnN phosph 93.6 0.049 1.1E-06 54.8 2.9 24 1-24 3-26 (179)
425 KOG1051 Chaperone HSP104 and r 93.6 0.34 7.4E-06 59.3 10.2 78 2-95 594-673 (898)
426 TIGR01360 aden_kin_iso1 adenyl 93.6 0.053 1.1E-06 55.0 3.1 23 1-23 5-27 (188)
427 TIGR00416 sms DNA repair prote 93.6 0.14 3.1E-06 59.2 6.9 34 1-34 96-129 (454)
428 PRK06002 fliI flagellum-specif 93.6 0.17 3.6E-06 57.5 7.2 22 1-22 167-188 (450)
429 KOG1514 Origin recognition com 93.5 0.86 1.9E-05 53.5 12.8 167 2-184 425-622 (767)
430 TIGR01425 SRP54_euk signal rec 93.5 0.33 7.1E-06 55.1 9.5 26 1-26 102-127 (429)
431 PRK14531 adenylate kinase; Pro 93.5 0.25 5.5E-06 49.7 7.9 22 2-23 5-26 (183)
432 PF10236 DAP3: Mitochondrial r 93.5 0.74 1.6E-05 50.5 12.0 48 133-180 258-306 (309)
433 PF00437 T2SE: Type II/IV secr 93.5 0.22 4.8E-06 53.8 7.9 100 2-119 130-231 (270)
434 COG3854 SpoIIIAA ncharacterize 93.5 0.4 8.7E-06 48.2 8.7 107 2-119 140-252 (308)
435 PRK06936 type III secretion sy 93.5 0.13 2.8E-06 58.3 6.1 87 2-94 165-264 (439)
436 PRK10751 molybdopterin-guanine 93.5 0.059 1.3E-06 53.0 3.1 25 1-25 8-32 (173)
437 COG4240 Predicted kinase [Gene 93.4 0.12 2.7E-06 51.5 5.1 81 1-83 52-134 (300)
438 COG3640 CooC CO dehydrogenase 93.4 0.1 2.2E-06 52.7 4.6 26 1-26 2-27 (255)
439 PRK02496 adk adenylate kinase; 93.4 0.22 4.7E-06 50.3 7.3 22 2-23 4-25 (184)
440 cd03233 ABC_PDR_domain1 The pl 93.4 0.3 6.6E-06 50.1 8.4 24 1-24 35-58 (202)
441 COG0703 AroK Shikimate kinase 93.4 0.068 1.5E-06 52.0 3.3 26 2-27 5-30 (172)
442 COG1936 Predicted nucleotide k 93.4 0.056 1.2E-06 52.0 2.6 20 1-20 2-21 (180)
443 PRK14723 flhF flagellar biosyn 93.4 0.5 1.1E-05 57.4 11.1 23 1-23 187-209 (767)
444 cd03287 ABC_MSH3_euk MutS3 hom 93.3 0.069 1.5E-06 55.3 3.4 116 1-126 33-160 (222)
445 COG1102 Cmk Cytidylate kinase 93.2 0.065 1.4E-06 50.7 2.8 25 1-25 2-26 (179)
446 PRK05057 aroK shikimate kinase 93.2 0.07 1.5E-06 53.1 3.2 23 2-24 7-29 (172)
447 PRK13946 shikimate kinase; Pro 93.2 0.072 1.6E-06 53.8 3.3 24 1-24 12-35 (184)
448 PRK04301 radA DNA repair and r 93.2 0.28 6E-06 54.3 8.2 34 1-34 104-143 (317)
449 TIGR03324 alt_F1F0_F1_al alter 93.2 0.23 4.9E-06 57.0 7.6 88 2-94 165-266 (497)
450 PF00154 RecA: recA bacterial 93.2 0.28 6.1E-06 53.3 7.9 84 1-94 55-143 (322)
451 TIGR01041 ATP_syn_B_arch ATP s 93.2 0.25 5.4E-06 56.6 7.9 89 2-93 144-249 (458)
452 PRK13948 shikimate kinase; Pro 93.2 0.074 1.6E-06 53.2 3.3 24 2-25 13-36 (182)
453 cd03282 ABC_MSH4_euk MutS4 hom 93.2 0.069 1.5E-06 54.7 3.1 21 1-21 31-51 (204)
454 cd03243 ABC_MutS_homologs The 93.1 0.056 1.2E-06 55.6 2.5 21 1-21 31-51 (202)
455 cd02029 PRK_like Phosphoribulo 93.1 0.12 2.5E-06 54.3 4.7 26 1-26 1-26 (277)
456 PRK13975 thymidylate kinase; P 93.1 0.072 1.6E-06 54.5 3.3 25 1-25 4-28 (196)
457 PRK09270 nucleoside triphospha 93.1 0.066 1.4E-06 56.2 3.1 26 1-26 35-60 (229)
458 cd00046 DEXDc DEAD-like helica 93.1 0.45 9.8E-06 45.0 8.8 33 2-34 3-37 (144)
459 COG1116 TauB ABC-type nitrate/ 93.1 0.061 1.3E-06 55.2 2.6 21 1-21 31-51 (248)
460 KOG0739 AAA+-type ATPase [Post 93.1 1.6 3.5E-05 45.7 12.6 23 2-24 169-191 (439)
461 TIGR02788 VirB11 P-type DNA tr 93.1 0.22 4.8E-06 54.7 7.2 107 2-121 147-254 (308)
462 PLN02459 probable adenylate ki 93.1 0.31 6.6E-06 51.3 7.8 92 2-101 32-128 (261)
463 TIGR02524 dot_icm_DotB Dot/Icm 93.1 0.13 2.8E-06 57.4 5.4 92 1-102 136-232 (358)
464 PRK15453 phosphoribulokinase; 93.0 0.11 2.3E-06 54.9 4.4 25 1-25 7-31 (290)
465 PRK10078 ribose 1,5-bisphospho 93.0 0.058 1.3E-06 54.6 2.4 23 1-23 4-26 (186)
466 cd01983 Fer4_NifH The Fer4_Nif 93.0 0.13 2.8E-06 45.3 4.4 25 1-25 1-25 (99)
467 TIGR01313 therm_gnt_kin carboh 93.0 0.067 1.4E-06 52.8 2.7 22 2-23 1-22 (163)
468 KOG3354 Gluconate kinase [Carb 92.9 0.091 2E-06 49.1 3.2 27 1-27 14-40 (191)
469 TIGR00554 panK_bact pantothena 92.9 0.073 1.6E-06 57.3 3.0 24 1-24 64-87 (290)
470 COG2401 ABC-type ATPase fused 92.9 0.33 7.1E-06 53.1 7.8 53 72-129 515-577 (593)
471 KOG0736 Peroxisome assembly fa 92.9 0.99 2.1E-05 53.5 12.1 26 1-26 433-458 (953)
472 PF14532 Sigma54_activ_2: Sigm 92.9 0.081 1.8E-06 50.5 3.1 22 2-23 24-45 (138)
473 cd01136 ATPase_flagellum-secre 92.9 0.24 5.2E-06 54.1 7.0 24 1-24 71-94 (326)
474 cd03281 ABC_MSH5_euk MutS5 hom 92.9 0.43 9.3E-06 49.3 8.6 21 1-21 31-51 (213)
475 TIGR02525 plasmid_TraJ plasmid 92.9 0.37 8E-06 54.0 8.6 93 1-102 151-245 (372)
476 cd02034 CooC The accessory pro 92.9 0.15 3.3E-06 46.8 4.6 25 2-26 2-26 (116)
477 TIGR03263 guanyl_kin guanylate 92.9 0.068 1.5E-06 53.8 2.6 23 1-23 3-25 (180)
478 COG3638 ABC-type phosphate/pho 92.8 0.12 2.5E-06 52.4 4.1 33 1-34 32-64 (258)
479 PF08477 Miro: Miro-like prote 92.8 0.092 2E-06 48.5 3.2 20 2-21 2-21 (119)
480 cd03213 ABCG_EPDR ABCG transpo 92.8 0.59 1.3E-05 47.6 9.4 23 1-23 37-59 (194)
481 cd00820 PEPCK_HprK Phosphoenol 92.8 0.073 1.6E-06 47.5 2.4 20 1-20 17-36 (107)
482 PF13504 LRR_7: Leucine rich r 92.8 0.057 1.2E-06 30.5 1.1 16 748-763 2-17 (17)
483 PRK09281 F0F1 ATP synthase sub 92.8 0.22 4.9E-06 57.7 6.9 88 2-94 165-266 (502)
484 KOG0652 26S proteasome regulat 92.8 2 4.2E-05 44.0 12.5 135 2-167 208-371 (424)
485 PF00625 Guanylate_kin: Guanyl 92.8 0.097 2.1E-06 52.8 3.5 30 1-30 4-33 (183)
486 PRK00300 gmk guanylate kinase; 92.7 0.078 1.7E-06 54.7 2.8 23 1-23 7-29 (205)
487 PRK13768 GTPase; Provisional 92.7 0.12 2.6E-06 55.1 4.3 26 1-26 4-29 (253)
488 PRK07594 type III secretion sy 92.7 0.15 3.3E-06 57.8 5.3 23 1-23 157-179 (433)
489 COG1419 FlhF Flagellar GTP-bin 92.7 0.37 8E-06 53.4 8.0 34 1-34 205-240 (407)
490 COG2019 AdkA Archaeal adenylat 92.7 0.092 2E-06 50.0 2.9 23 1-23 6-28 (189)
491 COG1157 FliI Flagellar biosynt 92.6 0.37 7.9E-06 53.1 7.8 86 2-93 166-264 (441)
492 PRK05439 pantothenate kinase; 92.6 0.085 1.8E-06 57.2 3.0 25 1-25 88-112 (311)
493 COG3910 Predicted ATPase [Gene 92.5 1 2.2E-05 44.0 9.8 63 72-138 137-203 (233)
494 TIGR00708 cobA cob(I)alamin ad 92.5 0.25 5.3E-06 48.5 5.8 114 1-121 7-141 (173)
495 COG0488 Uup ATPase components 92.5 0.4 8.6E-06 56.3 8.6 49 74-127 163-217 (530)
496 PRK14530 adenylate kinase; Pro 92.5 0.1 2.2E-06 54.3 3.3 22 2-23 6-27 (215)
497 PF00560 LRR_1: Leucine Rich R 92.5 0.059 1.3E-06 32.8 1.0 19 395-413 2-20 (22)
498 TIGR00150 HI0065_YjeE ATPase, 92.5 0.098 2.1E-06 48.9 2.8 23 1-23 24-46 (133)
499 PRK04182 cytidylate kinase; Pr 92.4 0.095 2.1E-06 52.7 3.0 24 1-24 2-25 (180)
500 PRK06995 flhF flagellar biosyn 92.4 0.39 8.4E-06 55.4 8.2 24 1-24 258-281 (484)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.1e-98 Score=953.53 Aligned_cols=852 Identities=33% Similarity=0.548 Sum_probs=639.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEec--hhh---hc-----ccCCHHHHHHHHHHHHhhccCcccccccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANV--REK---SE-----KEGSVVSLQKQLLSDLLKLADISIWNVDD 70 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~~---~~-----~~~~~~~l~~~ll~~l~~~~~~~~~~~~~ 70 (1046)
|||||||||+||||||+++|+++..+|++.+|+.+. +.. .. .......++++++.++....+....
T Consensus 209 vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~---- 284 (1153)
T PLN03210 209 MVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIY---- 284 (1153)
T ss_pred EEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccC----
Confidence 689999999999999999999999999999998642 111 00 0111345677777777654433211
Q ss_pred hHHHHHHhhcCCeEEEEEecCCChHHHHHHhhccCCCCCCCEEEEEeCChhhHHHhcCCCcceEecCCCChHHHHHHHHH
Q 001603 71 GINIIGSRLRQKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSM 150 (1046)
Q Consensus 71 ~~~~i~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 150 (1046)
....+++++++||+||||||||+.++|+.+.+...|+++||+||||||+++++..++++. +|+|+.|+.+|||+||++
T Consensus 285 ~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~--~~~v~~l~~~ea~~LF~~ 362 (1153)
T PLN03210 285 HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDH--IYEVCLPSNELALEMFCR 362 (1153)
T ss_pred CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCe--EEEecCCCHHHHHHHHHH
Confidence 135688999999999999999999999999998889999999999999999987776665 999999999999999999
Q ss_pred hhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhcCCCChHHHHHHHHHHhcCCCCchHHHHhhcccccch-hhhhhh
Q 001603 151 KAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSFLNGRSVDLWRSTLKRLKKEPPNRIINILQISFDGLQD-LEKKIF 229 (1046)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~-~~k~~f 229 (1046)
+||++..+.+++++++++|+++|+|+||||+++|++|++++.++|+.++++++..++.+|..+|++||++|++ .+|.||
T Consensus 363 ~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~F 442 (1153)
T PLN03210 363 SAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIF 442 (1153)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhh
Confidence 9999887778899999999999999999999999999999999999999999998889999999999999986 589999
Q ss_pred ceeecccCCCCHHHHHHHHHhcCCCcccchhheeccceEEEecCCeEEehHHHHHHHHHHHhhcCCCCCCCccccccchh
Q 001603 230 LDVACFFKSWDRDHVEKILEGCGFSPVIGIEVLIEKSLLTVDDGNRLWMHDLLQELGHQIVQRQSPEQPGKRSRIWRDEE 309 (1046)
Q Consensus 230 l~~a~f~~~~~~~~l~~~~~~~g~~~~~~l~~L~~~~Li~~~~~~~~~mHdli~e~~~~i~~~e~~~~~~~~~rl~~~~~ 309 (1046)
+++||||.+++.+.+..++..+++.+..+++.|++++||+.. .++++|||++|+||++++++++ .+|++++|+|.+++
T Consensus 443 l~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~d 520 (1153)
T PLN03210 443 RHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKD 520 (1153)
T ss_pred heehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHH
Confidence 999999999999999999999999999999999999999987 6789999999999999999998 78999999999999
Q ss_pred HHHHhccCCCceeEEEEEeeccccccccccccChhhhcCCCCccEEEeCCc----------cCCCchhccccCccEEEec
Q 001603 310 VRHMLTENTGSEVVEGIIVDAYFLENEGYLSAGAKAFSQMTNLRLLKIDNL----------QLPEGLEYLSNKLRLLDWH 379 (1046)
Q Consensus 310 ~~~~l~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~----------~l~~~~~~l~~~Lr~L~l~ 379 (1046)
+++++..+.|++.+++|+++..... .+.+...+|.+|++|++|++..+ ++|+++..+|.+||+|+|.
T Consensus 521 i~~vl~~~~g~~~v~~i~l~~~~~~---~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~ 597 (1153)
T PLN03210 521 ICDVLEDNTGTKKVLGITLDIDEID---ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWD 597 (1153)
T ss_pred HHHHHHhCcccceeeEEEeccCccc---eeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEec
Confidence 9999999999999999999988876 78899999999999999999654 3688899999999999999
Q ss_pred CCCCCCCCCCCCCCCceEEEcCCCCchhhcccccCCCCCcEEEcCCCcCCCCCCCCCCCCCCCEEEeeCCCCCccccccc
Q 001603 380 RYPLKSLPSNFQLEKTVEFNMCYSRIEELWNEIKYLNMLKVMKLSHSQNLIKTPDFTGVPNLEELILEGCTRLHEIHPSL 459 (1046)
Q Consensus 380 ~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l 459 (1046)
+|+++.+|..+.+.+|++|+|++|+++.+|.++..+++|+.|+|+++..+..+|+++.+++|++|+|++|..+..+|..+
T Consensus 598 ~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si 677 (1153)
T PLN03210 598 KYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSI 677 (1153)
T ss_pred CCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhh
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred cCCCCccEEeccCCCCCCccCCcCCccccceeeccCCcCCccccccccccCCCCCeEecccccccccchhcccCCCCcEE
Q 001603 460 LLHSKLVILNLKDCTSLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLL 539 (1046)
Q Consensus 460 ~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L 539 (1046)
+++++|+.|++++|+.+..+|..+.+++|+.|++++|..+.... ....+|+.|++++|.++.+|..+ .+++|+.|
T Consensus 678 ~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p----~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L 752 (1153)
T PLN03210 678 QYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFP----DISTNISWLDLDETAIEEFPSNL-RLENLDEL 752 (1153)
T ss_pred hccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccc----cccCCcCeeecCCCccccccccc-cccccccc
Confidence 99999999999999999999998899999999999996654321 22467888888888888887654 46666666
Q ss_pred ecCCCCCCccchhhhhccCcCcEEeccCCCCCCcCCccccCCcccceeeccCcc-ccccCcccccCCCCCEEecCCCCCC
Q 001603 540 NLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTS-IAEVPSSIELLTGLQLLNLNNCSNL 618 (1046)
Q Consensus 540 ~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~-i~~lp~~l~~l~~L~~L~L~~~~~~ 618 (1046)
.+.++..... +..+ ....+......++|+.|++++|. +.++|.+++++++|+.|++++|..+
T Consensus 753 ~l~~~~~~~l-~~~~----------------~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L 815 (1153)
T PLN03210 753 ILCEMKSEKL-WERV----------------QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL 815 (1153)
T ss_pred cccccchhhc-cccc----------------cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCc
Confidence 6655432110 0000 00001111122345555555542 3345555555666666666666555
Q ss_pred CccCCccCCCCCCCEEeccCCCCCCCcCcccCCCCCCceeeccCccccCCCcchhhccCCceeecCCCCCCCCCCCcccC
Q 001603 619 VRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWH 698 (1046)
Q Consensus 619 ~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~p~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 698 (1046)
+.+|..+ ++++|++|++++|..+..+|.. .++|+.|+|++|.++.
T Consensus 816 ~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~------------------------------- 860 (1153)
T PLN03210 816 ETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE------------------------------- 860 (1153)
T ss_pred CeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCcc-------------------------------
Confidence 5555544 4556666666665555444432 2334444444444444
Q ss_pred cccccccCcCCcccccCCCccCCCCCCEEecCCCCCCCCCCcccccCcCCCCeeeCCCC-CCcccchhhhhccccCeecc
Q 001603 699 FPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQN-NFVTLPASINSLFNLGQLDL 777 (1046)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~Ls~n-~l~~lp~~i~~l~~L~~L~L 777 (1046)
+|..+..+++|+.|+|++| ++..+|..+..+++|+.|++
T Consensus 861 ----------------------------------------iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l 900 (1153)
T PLN03210 861 ----------------------------------------VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDF 900 (1153)
T ss_pred ----------------------------------------ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeec
Confidence 4444445555555555542 44455555555666666666
Q ss_pred ccccccccCCC--CCCCCceeecCCCcccccccccccccccccccccccccccccCCchhHHHHHHHHHhhccCCCcceE
Q 001603 778 EDCKRLQSMPQ--LPSNLYEVQVNGCASLVTLSGALKLCKSKCTSINCIGSLKLAGNNGLAISMLREYLKAVSDPMKEFN 855 (1046)
Q Consensus 778 ~~c~~l~~ip~--lp~~L~~L~~~~C~~L~~l~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 855 (1046)
++|+.++.++- .|.++. .+.++. ...++. .....+.||.. +.... ++++. .....
T Consensus 901 ~~C~~L~~~~l~~~~~~~~--~~~~n~-~~~~p~-----~~~l~f~nC~~---L~~~a---------~l~~~---~~~~~ 957 (1153)
T PLN03210 901 SDCGALTEASWNGSPSEVA--MATDNI-HSKLPS-----TVCINFINCFN---LDQEA---------LLQQQ---SIFKQ 957 (1153)
T ss_pred CCCcccccccCCCCchhhh--hhcccc-cccCCc-----hhccccccccC---CCchh---------hhccc---ccceE
Confidence 66665554432 221111 111110 011111 11234556632 11100 11111 12346
Q ss_pred EEecCCCCCCCCCcCCCCceEE-EEcCCCCcCCCceeeEEEEEEEecCCCCcc--cccccceeeEEccCCceEEEeeccc
Q 001603 856 IVVPGSEIPKWFMYQNEGSSIT-VTRPSYLYNMNKVVGYAICCVFHVPKRSTR--SHLIQMLPCFFNGSGVHYFIRFKEK 932 (1046)
Q Consensus 856 ~~~pg~~iP~wf~~~~~g~si~-~~lp~~~~~~~~~~gfa~c~v~~~~~~~~~--~~~~~~~~c~~~~~~~~~~~~~~~~ 932 (1046)
+++||.++|+||.||+.|++++ |.+|+.|. ...|.||++|+|+++...... ...++|. |++.+..+..+.
T Consensus 958 ~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~-~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~-c~~~~~~~~~~~----- 1030 (1153)
T PLN03210 958 LILSGEEVPSYFTHRTTGASLTNIPLLHISP-CQPFFRFRACAVVDSESFFIISVSFDIQVC-CRFIDRLGNHFD----- 1030 (1153)
T ss_pred EECCCccCchhccCCcccceeeeeccCCccc-CCCccceEEEEEEecCccccCCCceeEEEE-EEEECCCCCccc-----
Confidence 7899999999999999999998 99999998 778999999999977653222 3344554 778766444332
Q ss_pred CCCCCCCeEEEEEEechhhh----------cc--CCCCCcceEEEEEecCCC-CCeEEEEeeeEEEeeccccc
Q 001603 933 FGQGRSDHLWLLYLSREACR----------ES--NWHFESNHIELAFKPMSG-PGLKVTRCGIHPVYMDEVEQ 992 (1046)
Q Consensus 933 ~~~~~s~h~~~~~~~~~~~~----------~~--~~~~~~~~~~~~f~~~~~-~~~~vk~cGv~l~y~~~~~~ 992 (1046)
....+|+|+.|....++. +. .....++|+++.|+.... ..++||+||||++|+.+..+
T Consensus 1031 --~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~cg~~~~~~~~~~~ 1101 (1153)
T PLN03210 1031 --SPYQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLTNKNSQLKLKGCGIRLSEDDSSLN 1101 (1153)
T ss_pred --cCCCceeEeeeccccceEEecccccccccccchhccCCceeeEEEEEecCCCCeEEEeeeEEEeccCCCcc
Confidence 223445554444322111 00 112357888888865432 34799999999999776543
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.3e-59 Score=560.07 Aligned_cols=432 Identities=28% Similarity=0.360 Sum_probs=341.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH---HccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhcc-CcccccccchHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDL---ISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLA-DISIWNVDDGINIIG 76 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~-~~~~~~~~~~~~~i~ 76 (1046)
+|||+||||+||||||++++|+ +.++|+.++|+. +++.+. ...++++++..++... .......++....|.
T Consensus 181 iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~-~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~ 255 (889)
T KOG4658|consen 181 IVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFT-TRKIQQTILERLGLLDEEWEDKEEDELASKLL 255 (889)
T ss_pred EEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----Eccccc-HHhHHHHHHHHhccCCcccchhhHHHHHHHHH
Confidence 5899999999999999999983 678999999999 444555 8999999999988422 222223367888999
Q ss_pred HhhcCCeEEEEEecCCChHHHHHHhhccCCCCCCCEEEEEeCChhhHHH-hcCCCcceEecCCCChHHHHHHHHHhhcCC
Q 001603 77 SRLRQKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQLLVA-HEVDEEHIYNLEVLSNDEALQLFSMKAFKT 155 (1046)
Q Consensus 77 ~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 155 (1046)
+.|++||++||+||||+..+|+.+..+++....|++|++|||++.|+.. ++++. .++++.|+.+|||+||++.||..
T Consensus 256 ~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~--~~~v~~L~~~eaW~LF~~~v~~~ 333 (889)
T KOG4658|consen 256 NLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDY--PIEVECLTPEEAWDLFQKKVGPN 333 (889)
T ss_pred HHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCc--cccccccCccccHHHHHHhhccc
Confidence 9999999999999999999999999999988889999999999999877 55544 89999999999999999999987
Q ss_pred C-CCCchHHHHHHHHHHHhCCCchHHHHHhhhcCCC-ChHHHHHHHHHHhcC-----C--CCchHHHHhhcccccchhhh
Q 001603 156 R-QPMGEYVELSKRVLKYAGGLPLALTVLGSFLNGR-SVDLWRSTLKRLKKE-----P--PNRIINILQISFDGLQDLEK 226 (1046)
Q Consensus 156 ~-~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~-~~~~w~~~l~~l~~~-----~--~~~i~~~l~~sy~~L~~~~k 226 (1046)
. ...+..+++|++++++|+|+|||++++|+.|+.+ ++.+|+.+.+.+... + .+.|..+++.|||.||++.|
T Consensus 334 ~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK 413 (889)
T KOG4658|consen 334 TLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELK 413 (889)
T ss_pred cccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHH
Confidence 3 3446689999999999999999999999999986 788999999988654 1 35788999999999998899
Q ss_pred hhhceeecccCCC--CHHHHHHHHHhcCCCcc------------cchhheeccceEEEecC----CeEEehHHHHHHHHH
Q 001603 227 KIFLDVACFFKSW--DRDHVEKILEGCGFSPV------------IGIEVLIEKSLLTVDDG----NRLWMHDLLQELGHQ 288 (1046)
Q Consensus 227 ~~fl~~a~f~~~~--~~~~l~~~~~~~g~~~~------------~~l~~L~~~~Li~~~~~----~~~~mHdli~e~~~~ 288 (1046)
.||+|||.||+++ +.+.++..|+++||+.. ..++.|++++|+..... ..+.|||++||||.+
T Consensus 414 ~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ 493 (889)
T KOG4658|consen 414 SCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALW 493 (889)
T ss_pred HHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHH
Confidence 9999999999998 78999999999998743 23899999999988642 689999999999999
Q ss_pred HHhhcCCCCCCCccccccchhHHHHhccCCCceeEEEEEeeccccccccccccChhhhcCCCCccEEEeCCcc--C---C
Q 001603 289 IVQRQSPEQPGKRSRIWRDEEVRHMLTENTGSEVVEGIIVDAYFLENEGYLSAGAKAFSQMTNLRLLKIDNLQ--L---P 363 (1046)
Q Consensus 289 i~~~e~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~--l---~ 363 (1046)
++.+....... .+.....-.+...+......++++++....... + ... ...++|++|-+.+|. + +
T Consensus 494 ias~~~~~~e~---~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~---~---~~~-~~~~~L~tLll~~n~~~l~~is 563 (889)
T KOG4658|consen 494 IASDFGKQEEN---QIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH---I---AGS-SENPKLRTLLLQRNSDWLLEIS 563 (889)
T ss_pred Hhccccccccc---eEEECCcCccccccccchhheeEEEEeccchhh---c---cCC-CCCCccceEEEeecchhhhhcC
Confidence 99854432222 111110000001222333455555554443321 1 111 123368888887774 2 4
Q ss_pred CchhccccCccEEEecCC-CCCCCCCCC-CCCCceEEEcCCCCchhhcccccCCCCCcEEEcCCCcCCCCCCCCCC-CCC
Q 001603 364 EGLEYLSNKLRLLDWHRY-PLKSLPSNF-QLEKTVEFNMCYSRIEELWNEIKYLNMLKVMKLSHSQNLIKTPDFTG-VPN 440 (1046)
Q Consensus 364 ~~~~~l~~~Lr~L~l~~~-~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~l~~-l~~ 440 (1046)
..++...+.||+||+++| .+..+|..+ .+-+|++|+++++.|+.+|.++.+|++|.+||+..+.....++.+.. +++
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~ 643 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQS 643 (889)
T ss_pred HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhccc
Confidence 444444455999999965 478899998 69999999999999999999999999999999998887777766544 899
Q ss_pred CCEEEeeCC
Q 001603 441 LEELILEGC 449 (1046)
Q Consensus 441 L~~L~L~~~ 449 (1046)
||+|.+...
T Consensus 644 Lr~L~l~~s 652 (889)
T KOG4658|consen 644 LRVLRLPRS 652 (889)
T ss_pred ccEEEeecc
Confidence 999988764
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.1e-40 Score=423.91 Aligned_cols=505 Identities=23% Similarity=0.250 Sum_probs=360.0
Q ss_pred CCCCCccccccchh-HHHHhccCC--CceeEEEEEeeccccccccccccChhhhcCCCCccEEEeCCccC----CCchhc
Q 001603 296 EQPGKRSRIWRDEE-VRHMLTENT--GSEVVEGIIVDAYFLENEGYLSAGAKAFSQMTNLRLLKIDNLQL----PEGLEY 368 (1046)
Q Consensus 296 ~~~~~~~rl~~~~~-~~~~l~~~~--~~~~~~~i~l~~~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~l----~~~~~~ 368 (1046)
..|.+..+.|...+ .+.+ .... ....+..+.+.... .....+..|..+++|++|++++|++ |..+..
T Consensus 42 ~~~~~~~~~w~~~~~~c~w-~gv~c~~~~~v~~L~L~~~~-----i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~ 115 (968)
T PLN00113 42 NDPLKYLSNWNSSADVCLW-QGITCNNSSRVVSIDLSGKN-----ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFT 115 (968)
T ss_pred CCCcccCCCCCCCCCCCcC-cceecCCCCcEEEEEecCCC-----ccccCChHHhCCCCCCEEECCCCccCCcCChHHhc
Confidence 44666667786433 2322 1111 12234444433322 2233467899999999999999875 445554
Q ss_pred cccCccEEEecCCCCCCCCCCCCCCCceEEEcCCCCch-hhcccccCCCCCcEEEcCCCcCCCCCCC-CCCCCCCCEEEe
Q 001603 369 LSNKLRLLDWHRYPLKSLPSNFQLEKTVEFNMCYSRIE-ELWNEIKYLNMLKVMKLSHSQNLIKTPD-FTGVPNLEELIL 446 (1046)
Q Consensus 369 l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~Ls~~~~~~~~~~-l~~l~~L~~L~L 446 (1046)
...+|++|++++|.+....+...+++|++|++++|.+. .+|..+..+++|++|+|++|.+....|. +.++++|++|+|
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 45679999999999864333446889999999999987 6788899999999999999987766654 888999999999
Q ss_pred eCCCCCccccccccCCCCccEEeccCCCCCCccCCcC-CccccceeeccCCcCCccccccccccCCCCCeEeccccccc-
Q 001603 447 EGCTRLHEIHPSLLLHSKLVILNLKDCTSLTTLPGKI-SMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIE- 524 (1046)
Q Consensus 447 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~- 524 (1046)
++|.....+|..++.+++|+.|++++|.....+|..+ .+++|++|++++| .+....+..++++++|+.|++++|.+.
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN-NLTGPIPSSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc-eeccccChhHhCCCCCCEEECcCCeeec
Confidence 9998888888899999999999999887777777665 4888999999887 445556667788888888888888876
Q ss_pred ccchhcccCCCCcEEecCCCCCCccchhhhhccCcCcEEeccCCCCCCcCCccccCCcccceeeccCcccc-ccCccccc
Q 001603 525 ELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIA-EVPSSIEL 603 (1046)
Q Consensus 525 ~lp~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~i~-~lp~~l~~ 603 (1046)
.+|..+.++++|+.|++++|...+.+|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+. .+|..++.
T Consensus 275 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 354 (968)
T PLN00113 275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354 (968)
T ss_pred cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence 57777888888888888888877778887888888888888888877777777778888888888887776 56777777
Q ss_pred CCCCCEEecCCCCCCCccCCccCCCCCCCEEeccCCCCCCCcCcccCCCCCCceeeccCccccCC-CcchhhccCCceee
Q 001603 604 LTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRP-PSSIFVMNNLKTLS 682 (1046)
Q Consensus 604 l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~-p~~~~~l~~L~~L~ 682 (1046)
+++|+.|++++|.+.+.+|..+..+++|+.|++++|+..+.+|..+..+++|+.|++++|.+++. |..+..+++|+.|+
T Consensus 355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 434 (968)
T PLN00113 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434 (968)
T ss_pred CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence 77777777777777666666666666666666666655555555555555555555555555432 44444455555555
Q ss_pred cCCC------------------------CCCCCCCCcccCccccccc-CcCCcccccCCCccCCCCCCEEecCCCCCCCC
Q 001603 683 FSGC------------------------NGPPSSTSWHWHFPFNLMG-QRSYPVALMLPSLSGLHSLSKLDLSDCGLGEG 737 (1046)
Q Consensus 683 L~~~------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 737 (1046)
+++| ......+.......+.... ..+......+..+..+++|+.|+|++|.+ .+
T Consensus 435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~ 513 (968)
T PLN00113 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL-SG 513 (968)
T ss_pred CcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcc-ee
Confidence 5444 4332221111111111111 11222234556677888899999999988 57
Q ss_pred CCcccccCcCCCCeeeCCCCCCc-ccchhhhhccccCeeccccccccccCCCC---CCCCceeecCCCccccccc
Q 001603 738 AIPNDIGNLCSLKQLNLSQNNFV-TLPASINSLFNLGQLDLEDCKRLQSMPQL---PSNLYEVQVNGCASLVTLS 808 (1046)
Q Consensus 738 ~ip~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~l~~ip~l---p~~L~~L~~~~C~~L~~l~ 808 (1046)
.+|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|+....+|.. ..+|+.|++++|.-...+|
T Consensus 514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 78888889999999999999988 57888889999999999999888888863 3568888998887554444
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.4e-38 Score=403.18 Aligned_cols=463 Identities=21% Similarity=0.226 Sum_probs=288.5
Q ss_pred ccChhhhcCCCCccEEEeCCccCCCchh-ccccCccEEEecCCCCC-CCCCCC-CCCCceEEEcCCCCch-hhcccccCC
Q 001603 340 SAGAKAFSQMTNLRLLKIDNLQLPEGLE-YLSNKLRLLDWHRYPLK-SLPSNF-QLEKTVEFNMCYSRIE-ELWNEIKYL 415 (1046)
Q Consensus 340 ~~~~~~f~~l~~Lr~L~l~~~~l~~~~~-~l~~~Lr~L~l~~~~l~-~lp~~~-~l~~L~~L~L~~~~i~-~l~~~~~~l 415 (1046)
.++...|.++++||+|++++|.+...+. .....|++|++++|.+. .+|..+ .+.+|++|++++|.+. .+|..+.++
T Consensus 108 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 187 (968)
T PLN00113 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL 187 (968)
T ss_pred cCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhC
Confidence 3455566677777777777766532111 11234666666666664 455545 5666666666666654 455666666
Q ss_pred CCCcEEEcCCCcCCCCCCC-CCCCCCCCEEEeeCCCCCccccccccCCCCccEEeccCCCCCCccCCcC-Cccccceeec
Q 001603 416 NMLKVMKLSHSQNLIKTPD-FTGVPNLEELILEGCTRLHEIHPSLLLHSKLVILNLKDCTSLTTLPGKI-SMKSLKTLVL 493 (1046)
Q Consensus 416 ~~L~~L~Ls~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L 493 (1046)
++|++|+|++|.+....|. +.++++|++|+|++|.....+|..++.+++|++|++++|.....+|..+ .+++|++|++
T Consensus 188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267 (968)
T ss_pred cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEEC
Confidence 6666666666665544433 5566666666666666555566666666666666666655444455433 3555555555
Q ss_pred cCCcCCccccccccccCCCCCeEeccccccc-ccchhcccCCCCcEEecCCCCCCc------------------------
Q 001603 494 SGCLKLTKKCLEFAGSMNDLSELFLDRTTIE-ELPLSIQHLTGLVLLNLKDCKNLK------------------------ 548 (1046)
Q Consensus 494 ~~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~------------------------ 548 (1046)
++| .+....+..+.++++|+.|++++|.+. .+|..+.++++|+.|++++|...+
T Consensus 268 ~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 346 (968)
T PLN00113 268 YQN-KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG 346 (968)
T ss_pred cCC-eeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcC
Confidence 554 222233334444555555555555444 344444444455555554444444
Q ss_pred cchhhhhccCcCcEEeccCCCCCCcCCccccCCcccceeeccCcccc-ccCcccccCCCCCEEecCCCCCCCccCCccCC
Q 001603 549 SLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIA-EVPSSIELLTGLQLLNLNNCSNLVRLPSCING 627 (1046)
Q Consensus 549 ~l~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~ 627 (1046)
.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..+..
T Consensus 347 ~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~ 426 (968)
T PLN00113 347 EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK 426 (968)
T ss_pred cCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhc
Confidence 44444444455555555554444444444444455555555555444 44555666677777777777777677777777
Q ss_pred CCCCCEEeccCCCCCCCcCcccCCCCCCceeeccCccccCCCcchhhccCCceeecCCCCCCCCCCCccc-Cccc-cccc
Q 001603 628 LRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHW-HFPF-NLMG 705 (1046)
Q Consensus 628 l~~L~~L~Ls~c~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~p~~~~~l~~L~~L~L~~~~~~~~~~~~~~-~~~~-~~~~ 705 (1046)
+++|+.|++++|...+.++..+..+++|+.|++++|.+.+........++|+.|++++|......+.... ...+ .+..
T Consensus 427 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L 506 (968)
T PLN00113 427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKL 506 (968)
T ss_pred CCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEEC
Confidence 7777777777777777777766777777777777777765533344567899999999887654332211 1111 1222
Q ss_pred CcCCcccccCCCccCCCCCCEEecCCCCCCCCCCcccccCcCCCCeeeCCCCCCc-ccchhhhhccccCeeccccccccc
Q 001603 706 QRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFV-TLPASINSLFNLGQLDLEDCKRLQ 784 (1046)
Q Consensus 706 ~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~l~ 784 (1046)
..+.....+|..+.++++|++|+|++|.+ .+.+|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+..+
T Consensus 507 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 507 SENKLSGEIPDELSSCKKLVSLDLSHNQL-SGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred cCCcceeeCChHHcCccCCCEEECCCCcc-cccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 22333445677889999999999999999 6889999999999999999999998 789999999999999999999999
Q ss_pred cCCCC--CCCCceeecCCCccc
Q 001603 785 SMPQL--PSNLYEVQVNGCASL 804 (1046)
Q Consensus 785 ~ip~l--p~~L~~L~~~~C~~L 804 (1046)
.+|.. +.++....+.+.+.+
T Consensus 586 ~~p~~~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 586 SLPSTGAFLAINASAVAGNIDL 607 (968)
T ss_pred eCCCcchhcccChhhhcCCccc
Confidence 89863 233333344454444
No 5
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5e-36 Score=329.26 Aligned_cols=250 Identities=32% Similarity=0.522 Sum_probs=197.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH--HccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccC-c-ccccccchHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDL--ISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLAD-I-SIWNVDDGINIIG 76 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~-~-~~~~~~~~~~~i~ 76 (1046)
+|+|+||||+||||||++++++ ++++|+.++|+...+ ... ..+++++++.++..... . ...+..+....++
T Consensus 21 ~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~----~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~ 95 (287)
T PF00931_consen 21 VVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSK----NPS-LEQLLEQILRQLGEPDSSISDPKDIEELQDQLR 95 (287)
T ss_dssp EEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-----SC-CHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHH
T ss_pred EEEEEcCCcCCcceeeeeccccccccccccccccccccc----ccc-cccccccccccccccccccccccccccccccch
Confidence 5899999999999999999987 889999999987432 222 57888889988885422 1 2356667889999
Q ss_pred HhhcCCeEEEEEecCCChHHHHHHhhccCCCCCCCEEEEEeCChhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCC
Q 001603 77 SRLRQKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTR 156 (1046)
Q Consensus 77 ~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 156 (1046)
+.|+++++||||||||+..+|+.+...++.+..|++||||||++.++...... ...|+|++|+.+||++||.+.++...
T Consensus 96 ~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~-~~~~~l~~L~~~ea~~L~~~~~~~~~ 174 (287)
T PF00931_consen 96 ELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT-DKVIELEPLSEEEALELFKKRAGRKE 174 (287)
T ss_dssp HHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSC-EEEEECSS--HHHHHHHHHHHHTSHS
T ss_pred hhhccccceeeeeeecccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccc
Confidence 99999999999999999999999888777777899999999999887655432 34899999999999999999998766
Q ss_pred -CCCchHHHHHHHHHHHhCCCchHHHHHhhhcCCC-ChHHHHHHHHHHhcCC------CCchHHHHhhcccccchhhhhh
Q 001603 157 -QPMGEYVELSKRVLKYAGGLPLALTVLGSFLNGR-SVDLWRSTLKRLKKEP------PNRIINILQISFDGLQDLEKKI 228 (1046)
Q Consensus 157 -~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~-~~~~w~~~l~~l~~~~------~~~i~~~l~~sy~~L~~~~k~~ 228 (1046)
...+...+.+++|+++|+|+||||+++|++|+.+ +..+|+.+++++.... ...+..++..||+.|+++.|+|
T Consensus 175 ~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~ 254 (287)
T PF00931_consen 175 SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRC 254 (287)
T ss_dssp ----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHHH
Confidence 2334445788999999999999999999999543 7789999998876543 4679999999999999999999
Q ss_pred hceeecccCCC--CHHHHHHHHHhcCCCcc
Q 001603 229 FLDVACFFKSW--DRDHVEKILEGCGFSPV 256 (1046)
Q Consensus 229 fl~~a~f~~~~--~~~~l~~~~~~~g~~~~ 256 (1046)
|++||+||.++ +.+.++++|.++|++..
T Consensus 255 f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 255 FLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred HhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 99999999986 68999999999998764
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=8.3e-31 Score=281.86 Aligned_cols=419 Identities=24% Similarity=0.283 Sum_probs=257.2
Q ss_pred CccEEEecCCCCCCCCCC----CCCCCceEEEcCCCCchhh-cccccCCCCCcEEEcCCCcCCCCCCCCCC-CCCCCEEE
Q 001603 372 KLRLLDWHRYPLKSLPSN----FQLEKTVEFNMCYSRIEEL-WNEIKYLNMLKVMKLSHSQNLIKTPDFTG-VPNLEELI 445 (1046)
Q Consensus 372 ~Lr~L~l~~~~l~~lp~~----~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~~~~~~~l~~-l~~L~~L~ 445 (1046)
.-+.|+++++.+..+... +-+..-+.||+++|++..+ +..|.++++|+.+++.+|. +..+|.++. ..+|+.|+
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFGHESGHLEKLD 131 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccch-hhhcccccccccceeEEe
Confidence 445566666665554322 2344556677777777655 4456777777777777776 444555444 34577777
Q ss_pred eeCCCCCccccccccCCCCccEEeccCCCCCCccCCcC--CccccceeeccCCcCCccccccccccCCCCCeEecccccc
Q 001603 446 LEGCTRLHEIHPSLLLHSKLVILNLKDCTSLTTLPGKI--SMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTI 523 (1046)
Q Consensus 446 L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~l~~~~i 523 (1046)
|.+|.+...-.+++..++.|+.|+|+. +.+..+|... .-.++++|+|++| .++......+.++.+|..|.|++|.+
T Consensus 132 L~~N~I~sv~se~L~~l~alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNri 209 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALPALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRI 209 (873)
T ss_pred eeccccccccHHHHHhHhhhhhhhhhh-chhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcc
Confidence 777666555556666677777777776 3444444321 1234555555544 33333334444444555555555555
Q ss_pred cccchhcccCCCCcEEecCCCCCCccchhhhhccCcCcEEeccCCCCCCcCCccccCCcccceeeccCccccccCcc-cc
Q 001603 524 EELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSS-IE 602 (1046)
Q Consensus 524 ~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~-l~ 602 (1046)
+.+| +..|.+|++|+.|+|..|.+...-.-.|.++++|+.|.|..|.|..+.++ |-
T Consensus 210 ttLp-----------------------~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy 266 (873)
T KOG4194|consen 210 TTLP-----------------------QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY 266 (873)
T ss_pred cccC-----------------------HHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCccee
Confidence 5554 44455555555555555444333233455566666666666666655543 45
Q ss_pred cCCCCCEEecCCCCCCCccCCccCCCCCCCEEeccCCCCCCCcCcccCCCCCCceeeccCccccCC-CcchhhccCCcee
Q 001603 603 LLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRP-PSSIFVMNNLKTL 681 (1046)
Q Consensus 603 ~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~-p~~~~~l~~L~~L 681 (1046)
.+.++++|+|+.|.+...-..++.++++|+.|+++.|.+...-+.....+++|++|+|++|+++.+ +.++..+..|+.|
T Consensus 267 ~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L 346 (873)
T KOG4194|consen 267 GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL 346 (873)
T ss_pred eecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence 566666666666666655556667777777777777777666666677778888888888888887 4566778888888
Q ss_pred ecCCCCCCCCCCCcccCcccccccCcCCcccccCCCccCCCCCCEEecCCCCCCCCCCc---ccccCcCCCCeeeCCCCC
Q 001603 682 SFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIP---NDIGNLCSLKQLNLSQNN 758 (1046)
Q Consensus 682 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip---~~l~~l~~L~~L~Ls~n~ 758 (1046)
+|+.|...... -..|.++++|++|||++|.+. ..|. ..+.++++|+.|.|.||+
T Consensus 347 nLs~Nsi~~l~----------------------e~af~~lssL~~LdLr~N~ls-~~IEDaa~~f~gl~~LrkL~l~gNq 403 (873)
T KOG4194|consen 347 NLSHNSIDHLA----------------------EGAFVGLSSLHKLDLRSNELS-WCIEDAAVAFNGLPSLRKLRLTGNQ 403 (873)
T ss_pred cccccchHHHH----------------------hhHHHHhhhhhhhcCcCCeEE-EEEecchhhhccchhhhheeecCce
Confidence 88887643321 234677888888999888773 3332 346779999999999999
Q ss_pred Ccccch-hhhhccccCeeccccccccccCCCCCC--CCceeecCCCcccccccccccccccccccccccccccccCCchh
Q 001603 759 FVTLPA-SINSLFNLGQLDLEDCKRLQSMPQLPS--NLYEVQVNGCASLVTLSGALKLCKSKCTSINCIGSLKLAGNNGL 835 (1046)
Q Consensus 759 l~~lp~-~i~~l~~L~~L~L~~c~~l~~ip~lp~--~L~~L~~~~C~~L~~l~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 835 (1046)
+..+|. .+..++.|+.|+|.+|..-.--|.-+. .|++|.+.. . -..-.|
T Consensus 404 lk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nS--------s--------sflCDC------------ 455 (873)
T KOG4194|consen 404 LKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNS--------S--------SFLCDC------------ 455 (873)
T ss_pred eeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcc--------c--------ceEEec------------
Confidence 998885 588899999999999865544443222 333332211 0 001123
Q ss_pred HHHHHHHHHhhccCCCcceEEEecCCCCCCCCCcCC
Q 001603 836 AISMLREYLKAVSDPMKEFNIVVPGSEIPKWFMYQN 871 (1046)
Q Consensus 836 ~~~~l~~~~~~~~~~~~~~~~~~pg~~iP~wf~~~~ 871 (1046)
.++|+..|+...... ..+..-...|+|...|+
T Consensus 456 ql~Wl~qWl~~~~lq----~sv~a~CayPe~Lad~~ 487 (873)
T KOG4194|consen 456 QLKWLAQWLYRRKLQ----SSVIAKCAYPEPLADQS 487 (873)
T ss_pred cHHHHHHHHHhcccc----cceeeeccCCcccccce
Confidence 246666666654221 33556678999998886
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=7e-31 Score=282.46 Aligned_cols=378 Identities=23% Similarity=0.223 Sum_probs=259.2
Q ss_pred cEEEeCCccCCCc-----hhccccCccEEEecCCCCCCCCCCC--CCCCceEEEcCCCCchhhcccccCCCCCcEEEcCC
Q 001603 353 RLLKIDNLQLPEG-----LEYLSNKLRLLDWHRYPLKSLPSNF--QLEKTVEFNMCYSRIEELWNEIKYLNMLKVMKLSH 425 (1046)
Q Consensus 353 r~L~l~~~~l~~~-----~~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~ 425 (1046)
+.|+.+++.++.- ...+|..-+.|++++|.+..+...+ ++++|+++++.+|.++.+|.......+|+.|+|.+
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~ 134 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRH 134 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeec
Confidence 3455555555331 2334445566677777666665553 66777777777777777766666666677777776
Q ss_pred CcCCCCCCC-CCCCCCCCEEEeeCCCCCccccccccCCCCccEEeccCCCCCCccCC-cC-CccccceeeccCCcCCccc
Q 001603 426 SQNLIKTPD-FTGVPNLEELILEGCTRLHEIHPSLLLHSKLVILNLKDCTSLTTLPG-KI-SMKSLKTLVLSGCLKLTKK 502 (1046)
Q Consensus 426 ~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~-~~-~l~~L~~L~L~~~~~l~~~ 502 (1046)
|.+...... ++.++.|+.|||+.|.....--+++..-.++++|+|++|. ++.+.. .+ ++.+|-.|.|+.| .++..
T Consensus 135 N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrN-rittL 212 (873)
T KOG4194|consen 135 NLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRN-RITTL 212 (873)
T ss_pred cccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccC-ccccc
Confidence 665444333 6666677777777654444333455555667777776643 333322 22 3567777777766 55556
Q ss_pred cccccccCCCCCeEeccccccccc-chhcccCCCCcEEecCCCCCCccchhhhhccCcCcEEeccCCCCCCcCCccccCC
Q 001603 503 CLEFAGSMNDLSELFLDRTTIEEL-PLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSM 581 (1046)
Q Consensus 503 ~~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l 581 (1046)
....+.++++|+.|+|..|.|..+ -..+..+++|+.|.|..|...+.-...|..+.++++|+|..|+....-..++-++
T Consensus 213 p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL 292 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL 292 (873)
T ss_pred CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc
Confidence 667788899999999999999977 5568888999999999888877777788888888888888888777777788888
Q ss_pred cccceeeccCcccccc-CcccccCCCCCEEecCCCCCCCccCCccCCCCCCCEEeccCCCCCCCcCcccCCCCCCceeec
Q 001603 582 KDLMELFLDGTSIAEV-PSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDI 660 (1046)
Q Consensus 582 ~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~~~~l~~L~~L~L 660 (1046)
+.|+.|+++.|.|..+ +++.+..++|+.|+|++|.+....+..+..+..|++|+|++|+....-...|..+++|++|||
T Consensus 293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL 372 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL 372 (873)
T ss_pred chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence 8888888888888755 445677788888888888887777777777888888888887766555556677788888888
Q ss_pred cCccccCC----CcchhhccCCceeecCCCCCCCCCCCcccCcccccccCcCCcccccCCCccCCCCCCEEecCCCCCCC
Q 001603 661 SGTAIRRP----PSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGE 736 (1046)
Q Consensus 661 s~n~l~~~----p~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 736 (1046)
+.|.+... ...+..+++|+.|.+.||+..... ...|.++++|++|||.+|.| .
T Consensus 373 r~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~----------------------krAfsgl~~LE~LdL~~Nai-a 429 (873)
T KOG4194|consen 373 RSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP----------------------KRAFSGLEALEHLDLGDNAI-A 429 (873)
T ss_pred cCCeEEEEEecchhhhccchhhhheeecCceeeecc----------------------hhhhccCcccceecCCCCcc-e
Confidence 88876643 233445777777777777644321 23466777777777777776 3
Q ss_pred CCCcccccCcCCCCeeeCCC
Q 001603 737 GAIPNDIGNLCSLKQLNLSQ 756 (1046)
Q Consensus 737 ~~ip~~l~~l~~L~~L~Ls~ 756 (1046)
..-|++|..+ .|++|.+..
T Consensus 430 SIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 430 SIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred eecccccccc-hhhhhhhcc
Confidence 4556666666 677766654
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=3.7e-33 Score=287.65 Aligned_cols=257 Identities=25% Similarity=0.295 Sum_probs=123.6
Q ss_pred ccEEEeCCccC---CCchhccccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCchhhcccccCCCCCcEEEcCCCc
Q 001603 352 LRLLKIDNLQL---PEGLEYLSNKLRLLDWHRYPLKSLPSNF-QLEKTVEFNMCYSRIEELWNEIKYLNMLKVMKLSHSQ 427 (1046)
Q Consensus 352 Lr~L~l~~~~l---~~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~ 427 (1046)
|..|.+++|.+ .+.+..+.. |.+|+.+.|.+..+|+.+ .+..++.|+.++|++.++|+.+..+..|+.+++++|.
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~-l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLAC-LTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE 125 (565)
T ss_pred hhhhhhccCchhhccHhhhcccc-eeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc
Confidence 34444444432 233333333 555555555555555555 4555555555555555555555555555555555555
Q ss_pred CCCCCCCCCCCCCCCEEEeeCCCCCccccccccCCCCccEEeccCCCCCCccCCcCCccccceeeccCCcCCcccccccc
Q 001603 428 NLIKTPDFTGVPNLEELILEGCTRLHEIHPSLLLHSKLVILNLKDCTSLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFA 507 (1046)
Q Consensus 428 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~~ 507 (1046)
....+++++.+..|+.|+..+| ....+|.+++++.+|..|++.+++.....|..+.++.|+.|+...| +-...+..+
T Consensus 126 ~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N--~L~tlP~~l 202 (565)
T KOG0472|consen 126 LKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN--LLETLPPEL 202 (565)
T ss_pred eeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh--hhhcCChhh
Confidence 5555555555555555554443 2334455555555555555555333333333334555555544332 223334444
Q ss_pred ccCCCCCeEecccccccccchhcccCCCCcEEecCCCCCCccchhhhhccCcCcEEeccCCCCCCcCCccccCCccccee
Q 001603 508 GSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMEL 587 (1046)
Q Consensus 508 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 587 (1046)
+.+..|..|++..|.+..+| .|..+..|+.|.++.|...........++++|.+|++..|. +++.|..+..+.+|..|
T Consensus 203 g~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rL 280 (565)
T KOG0472|consen 203 GGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERL 280 (565)
T ss_pred cchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhh
Confidence 55555555555555555555 44444445555444433222211222244555555555432 33444444445555555
Q ss_pred eccCccccccCcccccCCCCCEEecCCC
Q 001603 588 FLDGTSIAEVPSSIELLTGLQLLNLNNC 615 (1046)
Q Consensus 588 ~L~~~~i~~lp~~l~~l~~L~~L~L~~~ 615 (1046)
++++|.|+.+|.+++++ .|+.|.+.+|
T Consensus 281 DlSNN~is~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 281 DLSNNDISSLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred cccCCccccCCcccccc-eeeehhhcCC
Confidence 55555555555555555 4555555444
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.9e-31 Score=287.78 Aligned_cols=364 Identities=25% Similarity=0.382 Sum_probs=240.3
Q ss_pred cEEEecCCCCC--CCCCCC-CCCCceEEEcCCCCchhhcccccCCCCCcEEEcCCCcCCCCCCCCCCCCCCCEEEeeCCC
Q 001603 374 RLLDWHRYPLK--SLPSNF-QLEKTVEFNMCYSRIEELWNEIKYLNMLKVMKLSHSQNLIKTPDFTGVPNLEELILEGCT 450 (1046)
Q Consensus 374 r~L~l~~~~l~--~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~ 450 (1046)
|-.|+++|.++ .+|.+. ++..++-|.|..+++..+|+.++.|.+|++|.+++|++......++.+|.|+.+++..|+
T Consensus 10 rGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~ 89 (1255)
T KOG0444|consen 10 RGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNN 89 (1255)
T ss_pred ecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccc
Confidence 33444444443 345444 555555666666666666666666666666666666655555556666666666666554
Q ss_pred C-CccccccccCCCCccEEeccCCCCCCccCCcCCccccceeeccCCcCCccccccccccCCCCCeEecccccccccchh
Q 001603 451 R-LHEIHPSLLLHSKLVILNLKDCTSLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLS 529 (1046)
Q Consensus 451 ~-~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~ 529 (1046)
. ...+|..+..+..|..|+|+. +.++..|... ..-+++-.|+|++|+|..+|.+
T Consensus 90 LKnsGiP~diF~l~dLt~lDLSh-NqL~EvP~~L------------------------E~AKn~iVLNLS~N~IetIPn~ 144 (1255)
T KOG0444|consen 90 LKNSGIPTDIFRLKDLTILDLSH-NQLREVPTNL------------------------EYAKNSIVLNLSYNNIETIPNS 144 (1255)
T ss_pred cccCCCCchhcccccceeeecch-hhhhhcchhh------------------------hhhcCcEEEEcccCccccCCch
Confidence 2 344566666666666666666 3455555432 1223333444444455555543
Q ss_pred -cccCCCCcEEecCCCCCCccchhhhhccCcCcEEeccCCCCCCcCCccccCCcccceeeccCcccc--ccCcccccCCC
Q 001603 530 -IQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIA--EVPSSIELLTG 606 (1046)
Q Consensus 530 -~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~i~--~lp~~l~~l~~ 606 (1046)
+.+++.|-.|+|++|. +..+|+.+..+..|++|.|++|++...-...+..|++|+.|.+++++-+ .+|.++..+.+
T Consensus 145 lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~N 223 (1255)
T KOG0444|consen 145 LFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHN 223 (1255)
T ss_pred HHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhh
Confidence 2345555555555432 3444445555555555555555544333333445566666666665433 56666666677
Q ss_pred CCEEecCCCCCCCccCCccCCCCCCCEEeccCCCCCCCcCcccCCCCCCceeeccCccccCCCcchhhccCCceeecCCC
Q 001603 607 LQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGC 686 (1046)
Q Consensus 607 L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~p~~~~~l~~L~~L~L~~~ 686 (1046)
|..++++.|. +..+|..+..+++|+.|+|++|.+.+ +....+...+|++|++|.|+++.+|+.+..++.|+.|.+.+|
T Consensus 224 L~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~N 301 (1255)
T KOG0444|consen 224 LRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNN 301 (1255)
T ss_pred hhhccccccC-CCcchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccC
Confidence 7777776543 44566666777777777777765443 333455567889999999999999999999999999988887
Q ss_pred CCCCCCCCcccCcccccccCcCCcccccCCCccCCCCCCEEecCCCCCCCCCCcccccCcCCCCeeeCCCCCCcccchhh
Q 001603 687 NGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASI 766 (1046)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i 766 (1046)
+..-. .+|+.++.+..|+.+..++|.+ ...|..++.|..|+.|.|++|++.++|+.|
T Consensus 302 kL~Fe---------------------GiPSGIGKL~~Levf~aanN~L--ElVPEglcRC~kL~kL~L~~NrLiTLPeaI 358 (1255)
T KOG0444|consen 302 KLTFE---------------------GIPSGIGKLIQLEVFHAANNKL--ELVPEGLCRCVKLQKLKLDHNRLITLPEAI 358 (1255)
T ss_pred ccccc---------------------CCccchhhhhhhHHHHhhcccc--ccCchhhhhhHHHHHhcccccceeechhhh
Confidence 75432 2478889999999999999998 679999999999999999999999999999
Q ss_pred hhccccCeeccccccccccCCC
Q 001603 767 NSLFNLGQLDLEDCKRLQSMPQ 788 (1046)
Q Consensus 767 ~~l~~L~~L~L~~c~~l~~ip~ 788 (1046)
.-|+.|+.||+..|+.|.-.|.
T Consensus 359 HlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 359 HLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hhcCCcceeeccCCcCccCCCC
Confidence 9999999999999999986664
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=9.8e-32 Score=277.17 Aligned_cols=412 Identities=23% Similarity=0.270 Sum_probs=332.9
Q ss_pred ccChhhhcCCCCccEEEeCCccC---CCchhccccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCchhhcccccCC
Q 001603 340 SAGAKAFSQMTNLRLLKIDNLQL---PEGLEYLSNKLRLLDWHRYPLKSLPSNF-QLEKTVEFNMCYSRIEELWNEIKYL 415 (1046)
Q Consensus 340 ~~~~~~f~~l~~Lr~L~l~~~~l---~~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l 415 (1046)
...+.+.+++..++.|+.+.|++ |+.+..++. |+.|+++.|.++.+|+++ .+..|..++..+|+|..+|+++..+
T Consensus 81 ~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~-l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~ 159 (565)
T KOG0472|consen 81 SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLIS-LVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNL 159 (565)
T ss_pred hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhh-hhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHH
Confidence 34456777788888888888864 677777766 899999999999999998 8889999999999999999999999
Q ss_pred CCCcEEEcCCCcCCCCCCCCCCCCCCCEEEeeCCCCCccccccccCCCCccEEeccCCCCCCccCCcCCccccceeeccC
Q 001603 416 NMLKVMKLSHSQNLIKTPDFTGVPNLEELILEGCTRLHEIHPSLLLHSKLVILNLKDCTSLTTLPGKISMKSLKTLVLSG 495 (1046)
Q Consensus 416 ~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~ 495 (1046)
.+|..+++.+|+....+++.-++..|++|+... +.++.+|+.++.+.+|..|++.. +.+..+|..-++..|++|.+..
T Consensus 160 ~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPef~gcs~L~Elh~g~ 237 (565)
T KOG0472|consen 160 SKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRR-NKIRFLPEFPGCSLLKELHVGE 237 (565)
T ss_pred HHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhh-cccccCCCCCccHHHHHHHhcc
Confidence 999999999999888888877799999999887 47788999999999999999999 6788899777899999999987
Q ss_pred CcCCccccccccccCCCCCeEecccccccccchhcccCCCCcEEecCCCCCCccchhhhhccCcCcEEeccCCCCCCcC-
Q 001603 496 CLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKF- 574 (1046)
Q Consensus 496 ~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~- 574 (1046)
| .+.....+....+++|..|++..|+++++|..+..+.+|++||+++|.. ..+|..++++ +|+.|.+.||++.+.-
T Consensus 238 N-~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgnl-hL~~L~leGNPlrTiRr 314 (565)
T KOG0472|consen 238 N-QIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI-SSLPYSLGNL-HLKFLALEGNPLRTIRR 314 (565)
T ss_pred c-HHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc-ccCCcccccc-eeeehhhcCCchHHHHH
Confidence 6 5555666677799999999999999999999999999999999998764 5677789999 9999999988743210
Q ss_pred ------------------------------------C-c---cccCCcccceeeccCccccccCcccccCC---CCCEEe
Q 001603 575 ------------------------------------P-E---SLGSMKDLMELFLDGTSIAEVPSSIELLT---GLQLLN 611 (1046)
Q Consensus 575 ------------------------------------p-~---~~~~l~~L~~L~L~~~~i~~lp~~l~~l~---~L~~L~ 611 (1046)
| . ....+.+.+.|.+++-+++.+|.....-. -....+
T Consensus 315 ~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vn 394 (565)
T KOG0472|consen 315 EIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVN 394 (565)
T ss_pred HHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEe
Confidence 0 0 01134577888888888888887643222 367778
Q ss_pred cCCCCCCCccCCccCCCCCCCEEeccCCCCCCCcCcccCCCCCCceeeccCccccCCCcchhhccCCceeecCCCCCCCC
Q 001603 612 LNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPS 691 (1046)
Q Consensus 612 L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~p~~~~~l~~L~~L~L~~~~~~~~ 691 (1046)
++.|++ ..+|..+..+..+.+.-+..++..+.+|..+..+++|..|++++|.+.++|..++.+..|+.|+++.|....
T Consensus 395 fskNqL-~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~- 472 (565)
T KOG0472|consen 395 FSKNQL-CELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRM- 472 (565)
T ss_pred cccchH-hhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccccccc-
Confidence 888765 456777777777777777777888888888899999999999999999999999999999999999875322
Q ss_pred CCCcccCcccccccCcCCcccccCCCccCCCCCCEEecCCCCCCCCCCc-ccccCcCCCCeeeCCCCCCcccchhhhhcc
Q 001603 692 STSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIP-NDIGNLCSLKQLNLSQNNFVTLPASINSLF 770 (1046)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip-~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~ 770 (1046)
+|..+-.+..|+.+-.++|++ +.++ +.+.+|.+|..|+|.+|.+..+|..+++++
T Consensus 473 ----------------------lP~~~y~lq~lEtllas~nqi--~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~Lgnmt 528 (565)
T KOG0472|consen 473 ----------------------LPECLYELQTLETLLASNNQI--GSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMT 528 (565)
T ss_pred ----------------------chHHHhhHHHHHHHHhccccc--cccChHHhhhhhhcceeccCCCchhhCChhhcccc
Confidence 122233344566666677887 3344 448888899999999999989998899999
Q ss_pred ccCeecccccccc
Q 001603 771 NLGQLDLEDCKRL 783 (1046)
Q Consensus 771 ~L~~L~L~~c~~l 783 (1046)
+|++|++++|+.-
T Consensus 529 nL~hLeL~gNpfr 541 (565)
T KOG0472|consen 529 NLRHLELDGNPFR 541 (565)
T ss_pred ceeEEEecCCccC
Confidence 9999999988765
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=1.2e-28 Score=266.32 Aligned_cols=349 Identities=21% Similarity=0.278 Sum_probs=272.4
Q ss_pred CCCCCCCCEEEeeCCCCCccccccccCCCCccEEeccCCCCCCccCCcCCccccceeeccCCcCCccccccccccCCCCC
Q 001603 435 FTGVPNLEELILEGCTRLHEIHPSLLLHSKLVILNLKDCTSLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLS 514 (1046)
Q Consensus 435 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~ 514 (1046)
+..++.++.|.|.. ..+..+|..++.+.+|++|.+.+|+..+..-....++.|+.+.+..|..-....+..+-.+..|+
T Consensus 28 v~qMt~~~WLkLnr-t~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt 106 (1255)
T KOG0444|consen 28 VEQMTQMTWLKLNR-TKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLT 106 (1255)
T ss_pred HHHhhheeEEEech-hhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccce
Confidence 44445555555544 34445555555555566665555433332222334666666666666555555666677888899
Q ss_pred eEecccccccccchhcccCCCCcEEecCCCCCCccchhhhhccCcCcEEeccCCCCCCcCCccccCCcccceeeccCccc
Q 001603 515 ELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSI 594 (1046)
Q Consensus 515 ~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~i 594 (1046)
.|+|++|.++++|..+..-+++-.|+|++|++.......+.++..|-.|+|++| .++.+|..+..+.+|+.|.|++|.+
T Consensus 107 ~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 107 ILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred eeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChh
Confidence 999999999999999999999999999998877766677888999999999985 4677888888899999999999877
Q ss_pred cccC-cccccCCCCCEEecCCCCCC-CccCCccCCCCCCCEEeccCCCCCCCcCcccCCCCCCceeeccCccccCCCcch
Q 001603 595 AEVP-SSIELLTGLQLLNLNNCSNL-VRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSI 672 (1046)
Q Consensus 595 ~~lp-~~l~~l~~L~~L~L~~~~~~-~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~p~~~ 672 (1046)
..+. ..+..+++|+.|.+++.+.+ ..+|.++..+.+|..++++.|+ +..+|+.+..+++|+.|+||+|.|+++....
T Consensus 186 ~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~ 264 (1255)
T KOG0444|consen 186 NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKITELNMTE 264 (1255)
T ss_pred hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCceeeeeccH
Confidence 5221 12334677888888876543 4588888889999999998754 5667888888999999999999999988888
Q ss_pred hhccCCceeecCCCCCCCCCCCcccCcccccccCcCCcccccCCCccCCCCCCEEecCCCCCCCCCCcccccCcCCCCee
Q 001603 673 FVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQL 752 (1046)
Q Consensus 673 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L 752 (1046)
....+|++|+++.|..+. +|..+..++.|+.|.+.+|.+.-..||+.++.+.+|+.+
T Consensus 265 ~~W~~lEtLNlSrNQLt~-----------------------LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 265 GEWENLETLNLSRNQLTV-----------------------LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred HHHhhhhhhccccchhcc-----------------------chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence 888899999999887554 377889999999999999999888999999999999999
Q ss_pred eCCCCCCcccchhhhhccccCeeccccccccccCCC---CCCCCceeecCCCccccccccc
Q 001603 753 NLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMPQ---LPSNLYEVQVNGCASLVTLSGA 810 (1046)
Q Consensus 753 ~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~ip~---lp~~L~~L~~~~C~~L~~l~~~ 810 (1046)
..++|++.-+|+++..+..|+.|.|++|+. -.+|+ +.+.|+.|+++..++|.--|.+
T Consensus 322 ~aanN~LElVPEglcRC~kL~kL~L~~NrL-iTLPeaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 322 HAANNKLELVPEGLCRCVKLQKLKLDHNRL-ITLPEAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred HhhccccccCchhhhhhHHHHHhcccccce-eechhhhhhcCCcceeeccCCcCccCCCCc
Confidence 999999999999999999999999998864 45665 6788999999999999865544
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=1.4e-24 Score=278.45 Aligned_cols=326 Identities=30% Similarity=0.425 Sum_probs=215.0
Q ss_pred hcccccCCC-CCcEEEcCCCcCCCCCCCCCCCCCCCEEEeeCCCCCccccccccCCCCccEEeccCCCCCCccCCcCCcc
Q 001603 408 LWNEIKYLN-MLKVMKLSHSQNLIKTPDFTGVPNLEELILEGCTRLHEIHPSLLLHSKLVILNLKDCTSLTTLPGKISMK 486 (1046)
Q Consensus 408 l~~~~~~l~-~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~~~l~ 486 (1046)
+|+++..++ +|+.|++.++.....+..+ ...+|++|++.+|. +..++..+..+++|+.|++++|..++.+|....++
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~ 657 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMAT 657 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCccccCC
Confidence 444444443 3666666555543333333 34566666666543 34455555666666666666666566666544455
Q ss_pred ccceeeccCCcCCccccccccccCCCCCeEecccccccccchhcccCCCCcEEecCCCCCCccchhhhhccCcCcEEecc
Q 001603 487 SLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLS 566 (1046)
Q Consensus 487 ~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~ 566 (1046)
+|+.|++++|. .+..+|..+.++++|+.|++++|..++.+|..+ ++++|+.|+++
T Consensus 658 ~Le~L~L~~c~------------------------~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Ls 712 (1153)
T PLN03210 658 NLETLKLSDCS------------------------SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLS 712 (1153)
T ss_pred cccEEEecCCC------------------------CccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCC
Confidence 55555555542 234567778888888888888888888888765 78899999999
Q ss_pred CCCCCCcCCccccCCcccceeeccCccccccCcccccCCCCCEEecCCCCCCCccCCccCCCCCCCEEeccCCCCCCCcC
Q 001603 567 GCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVP 646 (1046)
Q Consensus 567 ~~~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~ 646 (1046)
+|..++.+|.. ..+|+.|++++|.+..+|..+ .+++|+.|.+.++.... ++..+..+ .+
T Consensus 713 gc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~-l~~~~~~l----------------~~ 771 (1153)
T PLN03210 713 GCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEK-LWERVQPL----------------TP 771 (1153)
T ss_pred CCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhh-cccccccc----------------ch
Confidence 99888777754 457888899999888888765 57788888877654321 11111000 00
Q ss_pred cccCCCCCCceeeccCcc-ccCCCcchhhccCCceeecCCCCCCCCCCCcccCcccccccCcCCcccccCCCccCCCCCC
Q 001603 647 ETLGQVESLEELDISGTA-IRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLS 725 (1046)
Q Consensus 647 ~~~~~l~~L~~L~Ls~n~-l~~~p~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 725 (1046)
.....+++|+.|++++|. +..+|.++.++++|+.|++++|..+... |..+ ++++|+
T Consensus 772 ~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L----------------------P~~~-~L~sL~ 828 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL----------------------PTGI-NLESLE 828 (1153)
T ss_pred hhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee----------------------CCCC-CccccC
Confidence 111123455555555553 3345666666666666666666543321 2222 567888
Q ss_pred EEecCCCCCCCCCCcccccCcCCCCeeeCCCCCCcccchhhhhccccCeeccccccccccCCCCC---CCCceeecCCCc
Q 001603 726 KLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMPQLP---SNLYEVQVNGCA 802 (1046)
Q Consensus 726 ~L~Ls~n~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~ip~lp---~~L~~L~~~~C~ 802 (1046)
.|++++|.. ...+|.. .++|+.|+|++|.++.+|.++..+++|+.|++++|+.++.+|..+ ++|+.+++.+|.
T Consensus 829 ~L~Ls~c~~-L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 829 SLDLSGCSR-LRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred EEECCCCCc-ccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 888888765 2344432 468999999999999999999999999999999999999998754 467778999999
Q ss_pred cccccc
Q 001603 803 SLVTLS 808 (1046)
Q Consensus 803 ~L~~l~ 808 (1046)
+|+.++
T Consensus 905 ~L~~~~ 910 (1153)
T PLN03210 905 ALTEAS 910 (1153)
T ss_pred cccccc
Confidence 998765
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=4.7e-28 Score=275.12 Aligned_cols=401 Identities=21% Similarity=0.213 Sum_probs=213.1
Q ss_pred ChhhhcCCCCccEEEeCCccC---CCchhccccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCchhhcccccCCCC
Q 001603 342 GAKAFSQMTNLRLLKIDNLQL---PEGLEYLSNKLRLLDWHRYPLKSLPSNF-QLEKTVEFNMCYSRIEELWNEIKYLNM 417 (1046)
Q Consensus 342 ~~~~f~~l~~Lr~L~l~~~~l---~~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~ 417 (1046)
+-++.++.-+|+.|++++|++ |..+..+++ |+.|+++.|.+.++|... .+.+|++|+|.+|.+..+|.++..+++
T Consensus 37 pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~-L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lkn 115 (1081)
T KOG0618|consen 37 PLEFVEKRVKLKSLDLSNNQISSFPIQITLLSH-LRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKN 115 (1081)
T ss_pred chHHhhheeeeEEeeccccccccCCchhhhHHH-HhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhc
Confidence 344444555699999999986 556666655 999999999999999887 899999999999999999999999999
Q ss_pred CcEEEcCCCcCCCCCCCCCCCCCCCEEEeeCCCC-------------------CccccccccCCCCccEEeccCCCCCCc
Q 001603 418 LKVMKLSHSQNLIKTPDFTGVPNLEELILEGCTR-------------------LHEIHPSLLLHSKLVILNLKDCTSLTT 478 (1046)
Q Consensus 418 L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~-------------------~~~~~~~l~~l~~L~~L~L~~~~~l~~ 478 (1046)
|++|++++|++...+..+..+..++.+..++|.. ...++..+.+++. .|+|++|...
T Consensus 116 l~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-- 191 (1081)
T KOG0618|consen 116 LQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-- 191 (1081)
T ss_pred ccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh--
Confidence 9999999999777766666666666666666522 2223333333333 3444443322
Q ss_pred cCCcCCccccceeeccCCcCCccccccccccCCCCCeEecccccccccchhcccCCCCcEEecCCCCCCccchhhhhccC
Q 001603 479 LPGKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQ 558 (1046)
Q Consensus 479 lp~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~ 558 (1046)
.-....+..|+.|....|.... ..-..++|+.|+.+.|.+..+- .-..-.+|++++++.+.. ..+|.++..+.
T Consensus 192 ~~dls~~~~l~~l~c~rn~ls~-----l~~~g~~l~~L~a~~n~l~~~~-~~p~p~nl~~~dis~n~l-~~lp~wi~~~~ 264 (1081)
T KOG0618|consen 192 VLDLSNLANLEVLHCERNQLSE-----LEISGPSLTALYADHNPLTTLD-VHPVPLNLQYLDISHNNL-SNLPEWIGACA 264 (1081)
T ss_pred hhhhhhccchhhhhhhhcccce-----EEecCcchheeeeccCcceeec-cccccccceeeecchhhh-hcchHHHHhcc
Confidence 1111122333333222211000 0001122222222222222110 001123444444444332 22334444555
Q ss_pred cCcEEeccCCCCCCcCCccccCCcccceeeccCccccccCcccccCCCCCEEecCCCCCCCccC----------------
Q 001603 559 CLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLP---------------- 622 (1046)
Q Consensus 559 ~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~---------------- 622 (1046)
+|+.|...+|.+ ..+|..+..+++|+.|.+..|.++.+|...+.+++|++|+|..|.+....+
T Consensus 265 nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s 343 (1081)
T KOG0618|consen 265 NLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVS 343 (1081)
T ss_pred cceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhh
Confidence 555555544443 344444444445555555555555554444445555555554443322111
Q ss_pred ---------CccCCCCCCCEEeccCCCCCCCcCcccCCCCCCceeeccCccccCCCcc-hhhccCCceeecCCCCCCCCC
Q 001603 623 ---------SCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSS-IFVMNNLKTLSFSGCNGPPSS 692 (1046)
Q Consensus 623 ---------~~~~~l~~L~~L~Ls~c~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~p~~-~~~l~~L~~L~L~~~~~~~~~ 692 (1046)
..-..++.|+.|.+.+|.........+.++++|+.|+|++|++..+|++ +.++..|+.|+|+||+....
T Consensus 344 ~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L- 422 (1081)
T KOG0618|consen 344 SNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL- 422 (1081)
T ss_pred hccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh-
Confidence 1112234555555555555555545555556666666666666655543 33455555555655554331
Q ss_pred CCcccCcccccccCcCCcccccCCCccCCCCCCEEecCCCCCCCCCCcccccCcCCCCeeeCCCCCCc--ccchhhhhcc
Q 001603 693 TSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFV--TLPASINSLF 770 (1046)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~Ls~n~l~--~lp~~i~~l~ 770 (1046)
+..+..+..|++|...+|.+ ..+| .+..++.|+.+|+|.|+++ .+|..... +
T Consensus 423 ----------------------p~tva~~~~L~tL~ahsN~l--~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p 476 (1081)
T KOG0618|consen 423 ----------------------PDTVANLGRLHTLRAHSNQL--LSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-P 476 (1081)
T ss_pred ----------------------hHHHHhhhhhHHHhhcCCce--eech-hhhhcCcceEEecccchhhhhhhhhhCCC-c
Confidence 33444555555555555555 2345 4555555666666655555 22222111 4
Q ss_pred ccCeeccccccc
Q 001603 771 NLGQLDLEDCKR 782 (1046)
Q Consensus 771 ~L~~L~L~~c~~ 782 (1046)
+|++||+++|..
T Consensus 477 ~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 477 NLKYLDLSGNTR 488 (1081)
T ss_pred ccceeeccCCcc
Confidence 555666655553
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=1.3e-26 Score=263.47 Aligned_cols=433 Identities=22% Similarity=0.219 Sum_probs=301.2
Q ss_pred ccEEEeCCccC---CCchhccccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCchhhcccccCCCCCcEEEcCCCc
Q 001603 352 LRLLKIDNLQL---PEGLEYLSNKLRLLDWHRYPLKSLPSNF-QLEKTVEFNMCYSRIEELWNEIKYLNMLKVMKLSHSQ 427 (1046)
Q Consensus 352 Lr~L~l~~~~l---~~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~ 427 (1046)
|..|++..|.+ |-.+..-.-+|+.|++++|.+...|..+ .+.+|+.|+++.|.|..+|.+..++.+|++++|.+|.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~ 102 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNR 102 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccch
Confidence 67777777754 3222222334999999999999999998 8899999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCEEEeeCCCCCccccccccCCCCccEEeccCCCCCCccCCcCCccccceeeccCCcCCcccccccc
Q 001603 428 NLIKTPDFTGVPNLEELILEGCTRLHEIHPSLLLHSKLVILNLKDCTSLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFA 507 (1046)
Q Consensus 428 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~~ 507 (1046)
....+..+..+.+|+.|++++|.. ..+|.-+..++.+..+..++|..+..++... ++.+++..+ .+........
T Consensus 103 l~~lP~~~~~lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~----ik~~~l~~n-~l~~~~~~~i 176 (1081)
T KOG0618|consen 103 LQSLPASISELKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLGQTS----IKKLDLRLN-VLGGSFLIDI 176 (1081)
T ss_pred hhcCchhHHhhhcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhcccc----chhhhhhhh-hcccchhcch
Confidence 777777799999999999999654 4567778888888888888874444444322 566666554 2222233333
Q ss_pred ccCCCCCeEecccccccccchhcccCCCCcEEecCCCCCCccchhhhhccCcCcEEeccCCCCCCcCCccccCCccccee
Q 001603 508 GSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMEL 587 (1046)
Q Consensus 508 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 587 (1046)
..+.+ .|+|..|.+. -..+..+.+|+.|....|...... -.-++|+.|+.++|.+....+. ..-.+|+.+
T Consensus 177 ~~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~ 246 (1081)
T KOG0618|consen 177 YNLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYL 246 (1081)
T ss_pred hhhhe--eeecccchhh--hhhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeeccc--cccccceee
Confidence 44444 5888888887 344566777777777776654332 2346788888888877744332 234578888
Q ss_pred eccCccccccCcccccCCCCCEEecCCCCCCCccCCccCCCCCCCEEeccCCCCCCCcCcccCCCCCCceeeccCccccC
Q 001603 588 FLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRR 667 (1046)
Q Consensus 588 ~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~~~~l~~L~~L~Ls~n~l~~ 667 (1046)
+++.|.++.+|.+++.+.+|+.|.+.+|.+ ..+|..+....+|+.|.+..|. +..+|.....+++|+.|+|..|.+..
T Consensus 247 dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~ 324 (1081)
T KOG0618|consen 247 DISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPS 324 (1081)
T ss_pred ecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccccc
Confidence 888888888888888888888888888776 6677777778888888888764 45566677778888888888888888
Q ss_pred CCcchhhcc--CCceeecCCCCCCCCCCCcc--cCcccccccCcCCcccccCCCccCCCCCCEEecCCCCCCCCCCcc-c
Q 001603 668 PPSSIFVMN--NLKTLSFSGCNGPPSSTSWH--WHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPN-D 742 (1046)
Q Consensus 668 ~p~~~~~l~--~L~~L~L~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~-~ 742 (1046)
+|..+.... .|..|+.+.++......... ......+....+.......+.+.++.+|+.|+|++|.+ +.+|+ .
T Consensus 325 lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL--~~fpas~ 402 (1081)
T KOG0618|consen 325 LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL--NSFPASK 402 (1081)
T ss_pred cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc--ccCCHHH
Confidence 876544322 35666666555433221111 00111122223333444567788888999999999988 44664 4
Q ss_pred ccCcCCCCeeeCCCCCCcccchhhhh----------------------ccccCeeccccccccc-cCCC-CC-CCCceee
Q 001603 743 IGNLCSLKQLNLSQNNFVTLPASINS----------------------LFNLGQLDLEDCKRLQ-SMPQ-LP-SNLYEVQ 797 (1046)
Q Consensus 743 l~~l~~L~~L~Ls~n~l~~lp~~i~~----------------------l~~L~~L~L~~c~~l~-~ip~-lp-~~L~~L~ 797 (1046)
+.+++.|+.|+||||+++.+|.++.. ++.|+.+|++.|.... .+|+ +| ++|++|+
T Consensus 403 ~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLd 482 (1081)
T KOG0618|consen 403 LRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLD 482 (1081)
T ss_pred HhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceee
Confidence 67888888999999888877765544 4555556665553322 2232 56 7777777
Q ss_pred cCCCccc
Q 001603 798 VNGCASL 804 (1046)
Q Consensus 798 ~~~C~~L 804 (1046)
+.|.+.+
T Consensus 483 lSGN~~l 489 (1081)
T KOG0618|consen 483 LSGNTRL 489 (1081)
T ss_pred ccCCccc
Confidence 7777653
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.74 E-value=3.3e-17 Score=194.69 Aligned_cols=71 Identities=18% Similarity=0.148 Sum_probs=43.5
Q ss_pred CccEEEecCCCCCCCCCCCCCCCceEEEcCCCCchhhcccccCCCCCcEEEcCCCcCCCCCCCCCCCCCCCEEEeeCC
Q 001603 372 KLRLLDWHRYPLKSLPSNFQLEKTVEFNMCYSRIEELWNEIKYLNMLKVMKLSHSQNLIKTPDFTGVPNLEELILEGC 449 (1046)
Q Consensus 372 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~ 449 (1046)
.-..|+++++.++++|..+. .+|+.|++++|+++.+|.. +++|++|+|++|++... |.+ .++|+.|++++|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsL-P~l--p~sL~~L~Ls~N 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSL-PVL--PPGLLELSIFSN 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcc-cCc--ccccceeeccCC
Confidence 35567777788888887663 4677788888877777642 45666666666654322 221 234555555544
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.71 E-value=9.5e-19 Score=181.73 Aligned_cols=276 Identities=19% Similarity=0.159 Sum_probs=179.8
Q ss_pred hhccccCccEEEecCCCCCCCCCCC--CCCCceEEEcCCCCchhh-cccccCCCCCcEEEcCC-CcCCCCCCC-CCCCCC
Q 001603 366 LEYLSNKLRLLDWHRYPLKSLPSNF--QLEKTVEFNMCYSRIEEL-WNEIKYLNMLKVMKLSH-SQNLIKTPD-FTGVPN 440 (1046)
Q Consensus 366 ~~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~-~~~~~~~~~-l~~l~~ 440 (1046)
...+|..-..++|..|.|++||+.. .+++|+.||||+|+|+.+ |..|+.++.|..|-+-+ |++...+.+ |.++..
T Consensus 62 P~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 62 PANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred cccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 3445556677777778888777765 777777888888777776 55677777777766665 443333333 777777
Q ss_pred CCEEEeeCCCCCccccccccCCCCccEEeccCCCCCCccCCc-C-CccccceeeccCCcCCcccccc-----------cc
Q 001603 441 LEELILEGCTRLHEIHPSLLLHSKLVILNLKDCTSLTTLPGK-I-SMKSLKTLVLSGCLKLTKKCLE-----------FA 507 (1046)
Q Consensus 441 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~-~-~l~~L~~L~L~~~~~l~~~~~~-----------~~ 507 (1046)
|+.|.+.-|...-.....+..+++|..|.+.+ +.+..++.. + .+..++.+.+..|..+..-... .+
T Consensus 142 lqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred HHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 77777776665555556677777777777776 344555542 2 3666666666655322211111 11
Q ss_pred ccCCCCCeEecccccccccchhc--ccCCCCcEEecCCCCCCccch-hhhhccCcCcEEeccCCCCCCcCCccccCCccc
Q 001603 508 GSMNDLSELFLDRTTIEELPLSI--QHLTGLVLLNLKDCKNLKSLS-HTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDL 584 (1046)
Q Consensus 508 ~~l~~L~~L~l~~~~i~~lp~~~--~~l~~L~~L~L~~~~~~~~l~-~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L 584 (1046)
+......-..+....+..++..- ..+..+..--.+.|......| ..|..+++|+.|++++|.+...-+.+|.++..+
T Consensus 221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l 300 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL 300 (498)
T ss_pred ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence 11111111122222222222211 111122111222333333333 568999999999999999999999999999999
Q ss_pred ceeeccCccccccCcc-cccCCCCCEEecCCCCCCCccCCccCCCCCCCEEeccCCCCC
Q 001603 585 MELFLDGTSIAEVPSS-IELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKL 642 (1046)
Q Consensus 585 ~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l 642 (1046)
++|.|..|++..+... |..+.+|+.|+|.+|+++...|..|..+.+|.+|++-.|+..
T Consensus 301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 9999999999977654 788999999999999999999999999999999999887653
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.70 E-value=1.3e-16 Score=189.62 Aligned_cols=257 Identities=19% Similarity=0.165 Sum_probs=122.0
Q ss_pred cEEEeCCccCCCchhccccCccEEEecCCCCCCCCCCCCCCCceEEEcCCCCchhhcccccCCCCCcEEEcCCCcCCCCC
Q 001603 353 RLLKIDNLQLPEGLEYLSNKLRLLDWHRYPLKSLPSNFQLEKTVEFNMCYSRIEELWNEIKYLNMLKVMKLSHSQNLIKT 432 (1046)
Q Consensus 353 r~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~ 432 (1046)
..|+++++.+..-...++..|+.|.+.+|.++.+|.. +++|++|++++|+|+.+|.. .++|+.|++++|.+.. +
T Consensus 204 ~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~-L 277 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTH-L 277 (788)
T ss_pred cEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccCCchhh-h
Confidence 3455555544222222333566666666666666643 45666666666666666532 3456666666665332 2
Q ss_pred CCCCCCCCCCEEEeeCCCCCccccccccCCCCccEEeccCCCCCCccCCcCCccccceeeccCCcCCccccccccccCCC
Q 001603 433 PDFTGVPNLEELILEGCTRLHEIHPSLLLHSKLVILNLKDCTSLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAGSMND 512 (1046)
Q Consensus 433 ~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~ 512 (1046)
|. ..++|+.|++++|... .+|. .+++|+.|++++| .+..+|.. ..+|+.|++++|. ++.. +. ...+
T Consensus 278 p~--lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N-~L~~Lp~l--p~~L~~L~Ls~N~-L~~L-P~---lp~~ 343 (788)
T PRK15387 278 PA--LPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDN-QLASLPAL--PSELCKLWAYNNQ-LTSL-PT---LPSG 343 (788)
T ss_pred hh--chhhcCEEECcCCccc-cccc---cccccceeECCCC-ccccCCCC--cccccccccccCc-cccc-cc---cccc
Confidence 22 1245556666665332 3332 1345666666653 33344431 1234444444431 1110 00 0123
Q ss_pred CCeEecccccccccchhcccCCCCcEEecCCCCCCccchhhhhccCcCcEEeccCCCCCCcCCccccCCcccceeeccCc
Q 001603 513 LSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGT 592 (1046)
Q Consensus 513 L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~ 592 (1046)
|+.|++++|.++.+|.. .. +|+.|++++|.+. .+|.. ..+|+.|++++|
T Consensus 344 Lq~LdLS~N~Ls~LP~l---p~------------------------~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N 392 (788)
T PRK15387 344 LQELSVSDNQLASLPTL---PS------------------------ELYKLWAYNNRLT-SLPAL---PSGLKELIVSGN 392 (788)
T ss_pred cceEecCCCccCCCCCC---Cc------------------------ccceehhhccccc-cCccc---ccccceEEecCC
Confidence 44444444444444431 12 3344444443322 23322 134555555555
Q ss_pred cccccCcccccCCCCCEEecCCCCCCCccCCccCCCCCCCEEeccCCCCCCCcCcccCCCCCCceeeccCccccCC
Q 001603 593 SIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRP 668 (1046)
Q Consensus 593 ~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~ 668 (1046)
.++.+|.. .++|+.|++++|.+.. +|.. +.+|+.|++++|.+. .+|..+..+++|+.|++++|.+++.
T Consensus 393 ~Lt~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 393 RLTSLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred cccCCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence 55555432 2355556666655432 3432 234555666655433 4566666666666666666666543
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=1.8e-16 Score=189.89 Aligned_cols=53 Identities=13% Similarity=0.165 Sum_probs=28.9
Q ss_pred ccEEEecCCCCCCCCCCCCCCCceEEEcCCCCchhhcccccCCCCCcEEEcCCCcC
Q 001603 373 LRLLDWHRYPLKSLPSNFQLEKTVEFNMCYSRIEELWNEIKYLNMLKVMKLSHSQN 428 (1046)
Q Consensus 373 Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~ 428 (1046)
...|+++++.++++|..+ +++|+.|++++|+|+.+|..+. .+|++|++++|.+
T Consensus 180 ~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~L 232 (754)
T PRK15370 180 KTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQL 232 (754)
T ss_pred ceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcc
Confidence 445555555555555544 3455666666666665555433 3566666665543
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=2.6e-16 Score=188.65 Aligned_cols=227 Identities=21% Similarity=0.226 Sum_probs=133.2
Q ss_pred CccEEEeCCccCCCchhccccCccEEEecCCCCCCCCCCCCCCCceEEEcCCCCchhhcccccCCCCCcEEEcCCCcCCC
Q 001603 351 NLRLLKIDNLQLPEGLEYLSNKLRLLDWHRYPLKSLPSNFQLEKTVEFNMCYSRIEELWNEIKYLNMLKVMKLSHSQNLI 430 (1046)
Q Consensus 351 ~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~ 430 (1046)
+...|+++++.+..-...++..|+.|++++|.++++|..+. .+|++|++++|+++.+|..+. .+|+.|+|++|.+..
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~ 255 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITE 255 (754)
T ss_pred CceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEEECcCCccCc
Confidence 44567777766544334456678899999999998888764 588999999998888887654 478889998888654
Q ss_pred CCCCCCCCCCCCEEEeeCCCCCccccccccCCCCccEEeccCCCCCCccCCcCCccccceeeccCCcCCccccccccccC
Q 001603 431 KTPDFTGVPNLEELILEGCTRLHEIHPSLLLHSKLVILNLKDCTSLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAGSM 510 (1046)
Q Consensus 431 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l 510 (1046)
.+..+. .+|+.|++++|... .+|..+. ++|+.|++++| .+..+|..+ .++|+.|++++|. +... +.. -.
T Consensus 256 LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~l-p~sL~~L~Ls~N~-Lt~L-P~~--l~ 324 (754)
T PRK15370 256 LPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDN-SIRTLPAHL-PSGITHLNVQSNS-LTAL-PET--LP 324 (754)
T ss_pred CChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCC-ccccCcccc-hhhHHHHHhcCCc-cccC-Ccc--cc
Confidence 333332 47888888876444 5666543 47888888875 455565433 2356666666652 2211 111 12
Q ss_pred CCCCeEecccccccccchhcccCCCCcEEecCCCCCCccchhhhhccCcCcEEeccCCCCCCcCCccccCCcccceeecc
Q 001603 511 NDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLD 590 (1046)
Q Consensus 511 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~ 590 (1046)
++|+.|++++|.++.+|..+. ++|+.|++++|... .+|..+ .++|+.|++++|.+. .+|..+. ..|+.|+++
T Consensus 325 ~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs 396 (754)
T PRK15370 325 PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQAS 396 (754)
T ss_pred ccceeccccCCccccCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhc
Confidence 455566666666655554432 45555555555432 233332 134555555554433 2333222 234455555
Q ss_pred CccccccCc
Q 001603 591 GTSIAEVPS 599 (1046)
Q Consensus 591 ~~~i~~lp~ 599 (1046)
+|.+..+|.
T Consensus 397 ~N~L~~LP~ 405 (754)
T PRK15370 397 RNNLVRLPE 405 (754)
T ss_pred cCCcccCch
Confidence 555544443
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.65 E-value=3.1e-18 Score=177.98 Aligned_cols=369 Identities=18% Similarity=0.141 Sum_probs=240.1
Q ss_pred ccccccChhhhcCCCCccEEEeCCccC----CCchhccccCccEEEecCCCCCCCCCCC--CCCCceEEEcCCCCchhhc
Q 001603 336 EGYLSAGAKAFSQMTNLRLLKIDNLQL----PEGLEYLSNKLRLLDWHRYPLKSLPSNF--QLEKTVEFNMCYSRIEELW 409 (1046)
Q Consensus 336 ~~~~~~~~~~f~~l~~Lr~L~l~~~~l----~~~~~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l~ 409 (1046)
++...+++.+|+.+++||.|+|++|.| |+.|..+...++.++.++|+|+++|+.. .+..|+.|.+.-|++..++
T Consensus 77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir 156 (498)
T KOG4237|consen 77 NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIR 156 (498)
T ss_pred CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchh
Confidence 337789999999999999999999997 6678888776777778889999999986 8999999999999998665
Q ss_pred -ccccCCCCCcEEEcCCCcCCCCCC-CCCCCCCCCEEEeeCCCCCcc------------ccccccCCCCccEEeccCCCC
Q 001603 410 -NEIKYLNMLKVMKLSHSQNLIKTP-DFTGVPNLEELILEGCTRLHE------------IHPSLLLHSKLVILNLKDCTS 475 (1046)
Q Consensus 410 -~~~~~l~~L~~L~Ls~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~------------~~~~l~~l~~L~~L~L~~~~~ 475 (1046)
+.+..+++|..|.+..|.+..... .|..+..++.+.+..|..... .|..++.........+.+ +.
T Consensus 157 ~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~-~R 235 (498)
T KOG4237|consen 157 QDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYY-KR 235 (498)
T ss_pred HHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHH-HH
Confidence 468999999999999998655554 488889999998887653221 111122221111111211 11
Q ss_pred CCccCCcCCcccccee---eccCCcCCccccccccccCCCCCeEecccccccccc-hhcccCCCCcEEecCCCCCCccch
Q 001603 476 LTTLPGKISMKSLKTL---VLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELP-LSIQHLTGLVLLNLKDCKNLKSLS 551 (1046)
Q Consensus 476 l~~lp~~~~l~~L~~L---~L~~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~l~ 551 (1046)
+..++..-...+++.+ ..+.|.....-....+..+++|+.|++++|.++.+. .++..+..++.|.|..|+....-.
T Consensus 236 i~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~ 315 (498)
T KOG4237|consen 236 INQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSS 315 (498)
T ss_pred hcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHH
Confidence 1111111111112222 112221222222334677888888888888888774 457788888888888887777667
Q ss_pred hhhhccCcCcEEeccCCCCCCcCCccccCCcccceeeccCcccc------ccCccc-----------ccCCCCCEEecCC
Q 001603 552 HTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIA------EVPSSI-----------ELLTGLQLLNLNN 614 (1046)
Q Consensus 552 ~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~i~------~lp~~l-----------~~l~~L~~L~L~~ 614 (1046)
..|.++..|+.|+|++|++....|.+|..+..|..|++-.|.+. -+-.++ +....++.+.+++
T Consensus 316 ~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~d 395 (498)
T KOG4237|consen 316 GMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISD 395 (498)
T ss_pred HhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchh
Confidence 77888888888888888888888888888888888888766443 111111 1122355555554
Q ss_pred CCCCCc---cCCc---------cCCCCCCCEEeccCCCCCCCcCcccCCCCCCceeeccCccccCCCcchhhccCCceee
Q 001603 615 CSNLVR---LPSC---------INGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLS 682 (1046)
Q Consensus 615 ~~~~~~---l~~~---------~~~l~~L~~L~Ls~c~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~p~~~~~l~~L~~L~ 682 (1046)
..+... .|.. -..++-+.+..=-.|..+..+|..+ ...-.+|++.+|.++.+|.. .+.+| .++
T Consensus 396 v~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i--P~d~telyl~gn~~~~vp~~--~~~~l-~~d 470 (498)
T KOG4237|consen 396 VAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI--PVDVTELYLDGNAITSVPDE--LLRSL-LLD 470 (498)
T ss_pred ccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC--CchhHHHhcccchhcccCHH--HHhhh-hcc
Confidence 432211 1111 1112334433323334455566554 35667899999999999987 67788 889
Q ss_pred cCCCCCCCCCCCcccCcccccccCcCCcccccCCCccCCCCCCEEecCCC
Q 001603 683 FSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDC 732 (1046)
Q Consensus 683 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n 732 (1046)
+++|++.... -..|.+++.|.+|-||+|
T Consensus 471 ls~n~i~~Ls----------------------n~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 471 LSNNRISSLS----------------------NYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cccCceehhh----------------------cccccchhhhheeEEecC
Confidence 9988754321 123566777777777664
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.56 E-value=5.2e-16 Score=173.64 Aligned_cols=258 Identities=23% Similarity=0.202 Sum_probs=140.8
Q ss_pred ccccCCCCCeEeccccccc-----ccchhcccCCCCcEEecCCCCCC------ccchhhhhccCcCcEEeccCCCCCCcC
Q 001603 506 FAGSMNDLSELFLDRTTIE-----ELPLSIQHLTGLVLLNLKDCKNL------KSLSHTLRRLQCLKNLTLSGCSKLKKF 574 (1046)
Q Consensus 506 ~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~L~~~~~~------~~l~~~l~~l~~L~~L~L~~~~~~~~~ 574 (1046)
.+..+.+|+.|.++++.++ .++..+...++|+.|+++++... ..++..+..+++|+.|++++|.+....
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 3344455666666666553 34555566666777777665543 223445666677777777777666554
Q ss_pred CccccCCcc---cceeeccCccccc-----cCcccccC-CCCCEEecCCCCCCC----ccCCccCCCCCCCEEeccCCCC
Q 001603 575 PESLGSMKD---LMELFLDGTSIAE-----VPSSIELL-TGLQLLNLNNCSNLV----RLPSCINGLRSLKTLNLSGCSK 641 (1046)
Q Consensus 575 p~~~~~l~~---L~~L~L~~~~i~~-----lp~~l~~l-~~L~~L~L~~~~~~~----~l~~~~~~l~~L~~L~Ls~c~~ 641 (1046)
+..+..+.. |+.|++++|.+.. +...+..+ ++|+.|++++|.+.. .++..+..+++|++|++++|..
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 444444433 7777777766652 22234455 677777777776652 2233445556677777777665
Q ss_pred CC----CcCcccCCCCCCceeeccCccccCC-----CcchhhccCCceeecCCCCCCCCCCCcccCcccccccCcCCccc
Q 001603 642 LQ----NVPETLGQVESLEELDISGTAIRRP-----PSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVA 712 (1046)
Q Consensus 642 l~----~~~~~~~~l~~L~~L~Ls~n~l~~~-----p~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1046)
.+ .++..+..+++|+.|++++|.++.. ...+..+++|++|++++|....... .
T Consensus 178 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~------------------~ 239 (319)
T cd00116 178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA------------------A 239 (319)
T ss_pred chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH------------------H
Confidence 53 1233344455777777777766533 2233445667777776665322000 0
Q ss_pred ccCCC-ccCCCCCCEEecCCCCCCC---CCCcccccCcCCCCeeeCCCCCCccc-----chhhhhc-cccCeecccccc
Q 001603 713 LMLPS-LSGLHSLSKLDLSDCGLGE---GAIPNDIGNLCSLKQLNLSQNNFVTL-----PASINSL-FNLGQLDLEDCK 781 (1046)
Q Consensus 713 ~~~~~-l~~l~~L~~L~Ls~n~l~~---~~ip~~l~~l~~L~~L~Ls~n~l~~l-----p~~i~~l-~~L~~L~L~~c~ 781 (1046)
.+... ....+.|++|++++|.+.+ ..+...+..+++|+.|++++|.++.- ...+... +.|++|++.+++
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 00000 0123567777777776632 12233444556777777777777632 2223333 566777766654
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=3.5e-15 Score=137.58 Aligned_cols=169 Identities=30% Similarity=0.520 Sum_probs=109.1
Q ss_pred CCcccceeeccCccccccCcccccCCCCCEEecCCCCCCCccCCccCCCCCCCEEeccCCCCCCCcCcccCCCCCCceee
Q 001603 580 SMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELD 659 (1046)
Q Consensus 580 ~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~~~~l~~L~~L~ 659 (1046)
.+.+++.|.+++|+++.+|+.+..+.+|+.|++.+|++ +.+|.+++.+++|+.|+++-| .+..+|..|+.++.|+.||
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi-e~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI-EELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh-hhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhh
Confidence 44556666666677766666666666777776666543 345566666666666666543 3455677777777777777
Q ss_pred ccCccccC--CCcchhhccCCceeecCCCCCCCCCCCcccCcccccccCcCCcccccCCCccCCCCCCEEecCCCCCCCC
Q 001603 660 ISGTAIRR--PPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEG 737 (1046)
Q Consensus 660 Ls~n~l~~--~p~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 737 (1046)
+++|.+.+ +|..++.+.. |+.|.|++|.+ .
T Consensus 109 ltynnl~e~~lpgnff~m~t----------------------------------------------lralyl~dndf--e 140 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTT----------------------------------------------LRALYLGDNDF--E 140 (264)
T ss_pred ccccccccccCCcchhHHHH----------------------------------------------HHHHHhcCCCc--c
Confidence 77776654 2544444444 44455555555 4
Q ss_pred CCcccccCcCCCCeeeCCCCCCcccchhhhhccccCeeccccccccccCCCCCCCCceeecCCCc
Q 001603 738 AIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMPQLPSNLYEVQVNGCA 802 (1046)
Q Consensus 738 ~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~ip~lp~~L~~L~~~~C~ 802 (1046)
.+|.+++.+++|+.|.+..|.+-++|..++.++.|++|.+.+|+. + .+|+.|-.|+..+..
T Consensus 141 ~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl-~---vlppel~~l~l~~~k 201 (264)
T KOG0617|consen 141 ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL-T---VLPPELANLDLVGNK 201 (264)
T ss_pred cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee-e---ecChhhhhhhhhhhH
Confidence 577777788888888888888888888888888888888887743 2 234444455554443
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.46 E-value=1.1e-14 Score=162.99 Aligned_cols=250 Identities=24% Similarity=0.220 Sum_probs=148.1
Q ss_pred Eeccccccc--ccchhcccCCCCcEEecCCCCCCc----cchhhhhccCcCcEEeccCCCCCC------cCCccccCCcc
Q 001603 516 LFLDRTTIE--ELPLSIQHLTGLVLLNLKDCKNLK----SLSHTLRRLQCLKNLTLSGCSKLK------KFPESLGSMKD 583 (1046)
Q Consensus 516 L~l~~~~i~--~lp~~~~~l~~L~~L~L~~~~~~~----~l~~~l~~l~~L~~L~L~~~~~~~------~~p~~~~~l~~ 583 (1046)
|+|..+.++ .....+..+.+|+.|++++|.... .++..+...++|++|+++++...+ .++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 444444443 344455667779999999887643 355667777888999888876542 23345566778
Q ss_pred cceeeccCcccc-ccCcccccCC---CCCEEecCCCCCCC----ccCCccCCC-CCCCEEeccCCCCCC----CcCcccC
Q 001603 584 LMELFLDGTSIA-EVPSSIELLT---GLQLLNLNNCSNLV----RLPSCINGL-RSLKTLNLSGCSKLQ----NVPETLG 650 (1046)
Q Consensus 584 L~~L~L~~~~i~-~lp~~l~~l~---~L~~L~L~~~~~~~----~l~~~~~~l-~~L~~L~Ls~c~~l~----~~~~~~~ 650 (1046)
|+.|++++|.+. ..+..+..+. +|+.|++++|.... .+...+..+ ++|+.|++++|.... .++..+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 888888887776 2333333333 38888888776652 222334455 777778887777653 2334455
Q ss_pred CCCCCceeeccCccccCC-----CcchhhccCCceeecCCCCCCCCCCCcccCcccccccCcCCcccccCCCccCCCCCC
Q 001603 651 QVESLEELDISGTAIRRP-----PSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLS 725 (1046)
Q Consensus 651 ~l~~L~~L~Ls~n~l~~~-----p~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 725 (1046)
.+++|++|++++|.++.. +..+..+++|+.|++++|...... ...+...+..+++|+
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~------------------~~~l~~~~~~~~~L~ 224 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG------------------ASALAETLASLKSLE 224 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH------------------HHHHHHHhcccCCCC
Confidence 666777777777776632 223344457777777776543210 001122345566777
Q ss_pred EEecCCCCCCCCCCccccc----CcCCCCeeeCCCCCCc-----ccchhhhhccccCeecccccccc
Q 001603 726 KLDLSDCGLGEGAIPNDIG----NLCSLKQLNLSQNNFV-----TLPASINSLFNLGQLDLEDCKRL 783 (1046)
Q Consensus 726 ~L~Ls~n~l~~~~ip~~l~----~l~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~~l 783 (1046)
+|++++|.+.+..+..... ..+.|+.|++++|.++ .+...+..+++|+++++++|+..
T Consensus 225 ~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred EEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 7777777763211111111 1357777777777765 23444555667777777776543
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=5.9e-15 Score=136.06 Aligned_cols=156 Identities=26% Similarity=0.374 Sum_probs=79.8
Q ss_pred CCCCCCCCCceEEEcCCCCchhhcccccCCCCCcEEEcCCCcCCCCCCCCCCCCCCCEEEeeCCCCCccccccccCCCCc
Q 001603 386 LPSNFQLEKTVEFNMCYSRIEELWNEIKYLNMLKVMKLSHSQNLIKTPDFTGVPNLEELILEGCTRLHEIHPSLLLHSKL 465 (1046)
Q Consensus 386 lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L 465 (1046)
+|..|.+.+...|-||+|+++.+|..+..+.+|+.|++++|++...++.++.+++|+.|++.-| .+..+|..++.++.|
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPAL 104 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchh
Confidence 4444445555555555555555555555555555555555554444444555555555555432 333445555555555
Q ss_pred cEEeccCCCC-CCccCCcCCccccceeeccCCcCCccccccccccCCCCCeEecccccccccchhcccCCCCcEEecCCC
Q 001603 466 VILNLKDCTS-LTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDC 544 (1046)
Q Consensus 466 ~~L~L~~~~~-l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~ 544 (1046)
+.|++.+|+. -..+|+.+ -.|..|+-|+++.|.++-+|..++++++|+.|.+++|
T Consensus 105 evldltynnl~e~~lpgnf------------------------f~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNF------------------------FYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred hhhhccccccccccCCcch------------------------hHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC
Confidence 5555554332 12344332 2334445556666667777777777777777777665
Q ss_pred CCCccchhhhhccCcCcEEeccC
Q 001603 545 KNLKSLSHTLRRLQCLKNLTLSG 567 (1046)
Q Consensus 545 ~~~~~l~~~l~~l~~L~~L~L~~ 567 (1046)
..+ .+|..++.+..|++|.+.+
T Consensus 161 dll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 161 DLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred chh-hCcHHHHHHHHHHHHhccc
Confidence 432 2333333333333333333
No 25
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.34 E-value=4.3e-11 Score=153.76 Aligned_cols=272 Identities=16% Similarity=0.181 Sum_probs=167.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCc------------ccccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADI------------SIWNV 68 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~------------~~~~~ 68 (1046)
++.|.|++|.||||++..+.+. ++.++|+. +.+ ...+...+...++..+...... ...+.
T Consensus 34 ~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~-l~~---~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 105 (903)
T PRK04841 34 LVLVTSPAGYGKTTLISQWAAG----KNNLGWYS-LDE---SDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASL 105 (903)
T ss_pred eEEEECCCCCCHHHHHHHHHHh----CCCeEEEe-cCc---ccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCH
Confidence 4789999999999999998763 33577875 322 2222455556666666411100 00011
Q ss_pred cchHHHHHHhhc--CCeEEEEEecCCChH------HHHHHhhccCCCCCCCEEEEEeCChhhH--HHhcCCCcceEecC-
Q 001603 69 DDGINIIGSRLR--QKKVLLVIDDVADVE------QLQNLARKRDWFGPGSKIVITTRDKQLL--VAHEVDEEHIYNLE- 137 (1046)
Q Consensus 69 ~~~~~~i~~~L~--~kr~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~IiiTTR~~~~~--~~~~~~~~~~~~l~- 137 (1046)
......+...+. +.+++|||||+...+ .+..+... ..++.++|||||...-. ....... ...++.
T Consensus 106 ~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~---~~~~~~lv~~sR~~~~~~~~~l~~~~-~~~~l~~ 181 (903)
T PRK04841 106 SSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH---QPENLTLVVLSRNLPPLGIANLRVRD-QLLEIGS 181 (903)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh---CCCCeEEEEEeCCCCCCchHhHHhcC-cceecCH
Confidence 112222323332 689999999996542 33444433 34677888999985321 1111111 155666
Q ss_pred ---CCChHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhcCCCChHHHHHHHHHHhcCCCCchHHHH
Q 001603 138 ---VLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSFLNGRSVDLWRSTLKRLKKEPPNRIINIL 214 (1046)
Q Consensus 138 ---~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l 214 (1046)
+|+.+|+.+||.......- ..+.+.++.+.++|+|+++..++..+..... ........+...+...+...+
T Consensus 182 ~~l~f~~~e~~~ll~~~~~~~~-----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l 255 (903)
T PRK04841 182 QQLAFDHQEAQQFFDQRLSSPI-----EAAESSRLCDDVEGWATALQLIALSARQNNS-SLHDSARRLAGINASHLSDYL 255 (903)
T ss_pred HhCCCCHHHHHHHHHhccCCCC-----CHHHHHHHHHHhCChHHHHHHHHHHHhhCCC-chhhhhHhhcCCCchhHHHHH
Confidence 9999999999987653221 2255788999999999999998877654321 011112222222234566654
Q ss_pred hh-cccccchhhhhhhceeecccCCCCHHHHHHHHHhcCCCcccchhheeccceEEE-ec--CCeEEehHHHHHHHHHHH
Q 001603 215 QI-SFDGLQDLEKKIFLDVACFFKSWDRDHVEKILEGCGFSPVIGIEVLIEKSLLTV-DD--GNRLWMHDLLQELGHQIV 290 (1046)
Q Consensus 215 ~~-sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~~l~~L~~~~Li~~-~~--~~~~~mHdli~e~~~~i~ 290 (1046)
.- .++.||+..++.+...|+++ .++.+....+.... .....++.|.+.+++.. .+ ..+|.+|++++++.+...
T Consensus 256 ~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~~--~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 256 VEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGEE--NGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCCC--cHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 44 48999999999999999986 66655444443211 12345888889998653 32 237899999999999877
Q ss_pred hhc
Q 001603 291 QRQ 293 (1046)
Q Consensus 291 ~~e 293 (1046)
..+
T Consensus 333 ~~~ 335 (903)
T PRK04841 333 QWE 335 (903)
T ss_pred Hhc
Confidence 544
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.26 E-value=5.8e-12 Score=153.84 Aligned_cols=134 Identities=26% Similarity=0.375 Sum_probs=72.3
Q ss_pred CCCCCCCCCceEEEcCCCCchhhcccccCCCCCcEEEcCCCcC-CCCCCC--CCCCCCCCEEEeeCCCCCccccccccCC
Q 001603 386 LPSNFQLEKTVEFNMCYSRIEELWNEIKYLNMLKVMKLSHSQN-LIKTPD--FTGVPNLEELILEGCTRLHEIHPSLLLH 462 (1046)
Q Consensus 386 lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~-~~~~~~--l~~l~~L~~L~L~~~~~~~~~~~~l~~l 462 (1046)
.|........+...+-+|.+..++....+ ++|++|-+..|.. ....+. |..+|.|+.|||++|.....+|.+++.+
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L 594 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL 594 (889)
T ss_pred cccccchhheeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh
Confidence 34333444455555555555554433222 2455555555531 222222 4555555555555555555555555555
Q ss_pred CCccEEeccCCCCCCccCCcCCccccceeeccCCcCCccccccccccCCCCCeEecccccccccchhcccCCCCcEEecC
Q 001603 463 SKLVILNLKDCTSLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLK 542 (1046)
Q Consensus 463 ~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~ 542 (1046)
-+|++|++++ +.++.+|.++.++..|.+|++.
T Consensus 595 i~LryL~L~~------------------------------------------------t~I~~LP~~l~~Lk~L~~Lnl~ 626 (889)
T KOG4658|consen 595 VHLRYLDLSD------------------------------------------------TGISHLPSGLGNLKKLIYLNLE 626 (889)
T ss_pred hhhhcccccC------------------------------------------------CCccccchHHHHHHhhheeccc
Confidence 5554444444 4455566666666667777776
Q ss_pred CCCCCccchhhhhccCcCcEEeccCC
Q 001603 543 DCKNLKSLSHTLRRLQCLKNLTLSGC 568 (1046)
Q Consensus 543 ~~~~~~~l~~~l~~l~~L~~L~L~~~ 568 (1046)
.+..+..+|.....+++|++|.+..-
T Consensus 627 ~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 627 VTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccccccccchhhhcccccEEEeecc
Confidence 66666666666666777777776653
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.06 E-value=6.1e-09 Score=113.13 Aligned_cols=178 Identities=16% Similarity=0.136 Sum_probs=105.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHh--
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSR-- 78 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~-- 78 (1046)
++.|+|++|+||||+|+.+++.+...=-..+++.+. .. +..+++..++..++..... .+.......+.+.
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~-----~~-~~~~~l~~i~~~lG~~~~~--~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNT-----RV-DAEDLLRMVAADFGLETEG--RDKAALLRELEDFLI 116 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCC-----CC-CHHHHHHHHHHHcCCCCCC--CCHHHHHHHHHHHHH
Confidence 478999999999999999998765321111222211 11 2556777777766532211 1111222233322
Q ss_pred ---hcCCeEEEEEecCCChH--HHHHHhhccC---CCCCCCEEEEEeCChhhHHHhc--------CCCcceEecCCCChH
Q 001603 79 ---LRQKKVLLVIDDVADVE--QLQNLARKRD---WFGPGSKIVITTRDKQLLVAHE--------VDEEHIYNLEVLSND 142 (1046)
Q Consensus 79 ---L~~kr~LlVlDdv~~~~--~~~~l~~~~~---~~~~gs~IiiTTR~~~~~~~~~--------~~~~~~~~l~~L~~~ 142 (1046)
..+++.++|+||++... .++.+..-.. .......|++|.... ...... ......+++++++.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 25788999999998753 3444432111 112223455555433 211111 111236899999999
Q ss_pred HHHHHHHHhhcCCCC--CCchHHHHHHHHHHHhCCCchHHHHHhhhc
Q 001603 143 EALQLFSMKAFKTRQ--PMGEYVELSKRVLKYAGGLPLALTVLGSFL 187 (1046)
Q Consensus 143 ea~~Lf~~~a~~~~~--~~~~~~~~~~~i~~~~~GlPLal~~~~~~L 187 (1046)
|..+++...+..... ...-..+..+.|++.++|.|..+..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999877643221 112334788899999999999999988765
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=7.6e-11 Score=125.40 Aligned_cols=187 Identities=24% Similarity=0.191 Sum_probs=122.8
Q ss_pred cccCCcccceeeccCcccccc---CcccccCCCCCEEecCCCCCCCccCCcc-CCCCCCCEEeccCCCCCC-CcCcccCC
Q 001603 577 SLGSMKDLMELFLDGTSIAEV---PSSIELLTGLQLLNLNNCSNLVRLPSCI-NGLRSLKTLNLSGCSKLQ-NVPETLGQ 651 (1046)
Q Consensus 577 ~~~~l~~L~~L~L~~~~i~~l---p~~l~~l~~L~~L~L~~~~~~~~l~~~~-~~l~~L~~L~Ls~c~~l~-~~~~~~~~ 651 (1046)
....+++++.|+|+.|-+... -.....+|+|+.|+|+.|.+.-...+.. ..++.|+.|.|++|.... .+...+..
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 344556666666666655432 2334567777777777766543222211 246778888888887663 23334456
Q ss_pred CCCCceeeccCcc-ccCCCcchhhccCCceeecCCCCCCCCCCCcccCcccccccCcCCcccccCCCccCCCCCCEEecC
Q 001603 652 VESLEELDISGTA-IRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLS 730 (1046)
Q Consensus 652 l~~L~~L~Ls~n~-l~~~p~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls 730 (1046)
+|+|+.|+|.+|. +.........+..|+.|+|++|+...... ......|+.|..|+++
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~---------------------~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ---------------------GYKVGTLPGLNQLNLS 279 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc---------------------ccccccccchhhhhcc
Confidence 7888888888884 32223444557788888888887654311 2345678888999999
Q ss_pred CCCCCCCCCccc-----ccCcCCCCeeeCCCCCCcccch--hhhhccccCeeccccccccc
Q 001603 731 DCGLGEGAIPND-----IGNLCSLKQLNLSQNNFVTLPA--SINSLFNLGQLDLEDCKRLQ 784 (1046)
Q Consensus 731 ~n~l~~~~ip~~-----l~~l~~L~~L~Ls~n~l~~lp~--~i~~l~~L~~L~L~~c~~l~ 784 (1046)
.|++.+-.+|+. ...+++|++|+++.|++..+++ .+..+++|+.|.+..|+..+
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 998866566655 5678899999999999876663 46677888888877776544
No 29
>PF05729 NACHT: NACHT domain
Probab=99.02 E-value=2.7e-09 Score=106.61 Aligned_cols=144 Identities=24% Similarity=0.369 Sum_probs=86.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccc-----eeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFD-----GSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINII 75 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i 75 (1046)
++.|.|.+|+||||+++.++..+..... ...|+...+....... ...+...+......... .... .+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~----~~~~---~~ 73 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNN-SRSLADLLFDQLPESIA----PIEE---LL 73 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccc-cchHHHHHHHhhccchh----hhHH---HH
Confidence 5789999999999999999987755432 2344444554443322 12333333333321111 1111 12
Q ss_pred HHh-hcCCeEEEEEecCCChHH---------HHHHhhccC--CCCCCCEEEEEeCChhhHHHh-cCCCcceEecCCCChH
Q 001603 76 GSR-LRQKKVLLVIDDVADVEQ---------LQNLARKRD--WFGPGSKIVITTRDKQLLVAH-EVDEEHIYNLEVLSND 142 (1046)
Q Consensus 76 ~~~-L~~kr~LlVlDdv~~~~~---------~~~l~~~~~--~~~~gs~IiiTTR~~~~~~~~-~~~~~~~~~l~~L~~~ 142 (1046)
... .+.++++||||++|+... +..+...+. ...++.+||||+|........ .......+++++|+++
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 222 257899999999986532 222222211 125789999999998762221 1222248999999999
Q ss_pred HHHHHHHHhh
Q 001603 143 EALQLFSMKA 152 (1046)
Q Consensus 143 ea~~Lf~~~a 152 (1046)
+..+++.++.
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9999987653
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=1.4e-10 Score=116.89 Aligned_cols=133 Identities=30% Similarity=0.343 Sum_probs=79.7
Q ss_pred CcccceeeccCccccccCcccccCCCCCEEecCCCCCCCccCCccCCCCCCCEEeccCCCCCCCcCcccCCCCCCceeec
Q 001603 581 MKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDI 660 (1046)
Q Consensus 581 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~~~~l~~L~~L~L 660 (1046)
.+.|++++|++|.|+.+..+..-.|.++.|++++|.+... ..+..+++|+.|||
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--------------------------~nLa~L~~L~~LDL 336 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--------------------------QNLAELPQLQLLDL 336 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--------------------------hhhhhcccceEeec
Confidence 3567777777777777777666666666666666554332 12445677777888
Q ss_pred cCccccCCCcchhhccCCceeecCCCCCCCCCCCcccCcccccccCcCCcccccCCCccCCCCCCEEecCCCCCCCCCCc
Q 001603 661 SGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIP 740 (1046)
Q Consensus 661 s~n~l~~~p~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip 740 (1046)
++|.++.+..+-..+.|.+.|.|++|.+.+ .+.+..+-+|..||+++|+|..-.--
T Consensus 337 S~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~------------------------LSGL~KLYSLvnLDl~~N~Ie~ldeV 392 (490)
T KOG1259|consen 337 SGNLLAECVGWHLKLGNIKTLKLAQNKIET------------------------LSGLRKLYSLVNLDLSSNQIEELDEV 392 (490)
T ss_pred ccchhHhhhhhHhhhcCEeeeehhhhhHhh------------------------hhhhHhhhhheeccccccchhhHHHh
Confidence 888777776666667777777777665332 23344555666666666665221222
Q ss_pred ccccCcCCCCeeeCCCCCCcccc
Q 001603 741 NDIGNLCSLKQLNLSQNNFVTLP 763 (1046)
Q Consensus 741 ~~l~~l~~L~~L~Ls~n~l~~lp 763 (1046)
..++++|.|+.|.|.+|.+..+|
T Consensus 393 ~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 393 NHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred cccccccHHHHHhhcCCCccccc
Confidence 34455555555555555555444
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=3.1e-10 Score=120.84 Aligned_cols=211 Identities=19% Similarity=0.212 Sum_probs=101.6
Q ss_pred CCCCCeEecccccccccch--hcccCCCCcEEecCCCCCCcc--chhhhhccCcCcEEeccCCCCCCcCCc-cccCCccc
Q 001603 510 MNDLSELFLDRTTIEELPL--SIQHLTGLVLLNLKDCKNLKS--LSHTLRRLQCLKNLTLSGCSKLKKFPE-SLGSMKDL 584 (1046)
Q Consensus 510 l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~L~~~~~~~~--l~~~l~~l~~L~~L~L~~~~~~~~~p~-~~~~l~~L 584 (1046)
+++|++..|+...+...+. -...|++++.|+|+.|-.... +-.....||+|+.|+++.|.+.-.... .-..++.|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 4444555555555544442 344556666666665443222 223345556666666665543321111 01123444
Q ss_pred ceeeccCcccc--ccCcccccCCCCCEEecCCCCCCCccCCccCCCCCCCEEeccCCCCCCCcCcccCCCCCCceeeccC
Q 001603 585 MELFLDGTSIA--EVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISG 662 (1046)
Q Consensus 585 ~~L~L~~~~i~--~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~~~~l~~L~~L~Ls~ 662 (1046)
+.|.++.|.++ ++...+..+|+|+.|++..|.. .........-+..|++|+|++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~------------------------~~~~~~~~~i~~~L~~LdLs~ 255 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEI------------------------ILIKATSTKILQTLQELDLSN 255 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccc------------------------cceecchhhhhhHHhhccccC
Confidence 45555555444 2222233445555555554432 221111222234455555555
Q ss_pred ccccCCC--cchhhccCCceeecCCCCCCCCCCCcccCcccccccCcCCcccccCCCccCCCCCCEEecCCCCCCCCCCc
Q 001603 663 TAIRRPP--SSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIP 740 (1046)
Q Consensus 663 n~l~~~p--~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip 740 (1046)
|.+-..+ .....++.|..|+++.|.+..... +......-...+++|+.|+++.|++.+-..-
T Consensus 256 N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~----------------~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl 319 (505)
T KOG3207|consen 256 NNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAE----------------PDVESLDKTHTFPKLEYLNISENNIRDWRSL 319 (505)
T ss_pred CcccccccccccccccchhhhhccccCcchhcC----------------CCccchhhhcccccceeeecccCcccccccc
Confidence 5544443 334445555555555544322100 0000011134567888888888888443333
Q ss_pred ccccCcCCCCeeeCCCCCCc
Q 001603 741 NDIGNLCSLKQLNLSQNNFV 760 (1046)
Q Consensus 741 ~~l~~l~~L~~L~Ls~n~l~ 760 (1046)
..+..+++|+.|.+.+|.++
T Consensus 320 ~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 320 NHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred chhhccchhhhhhccccccc
Confidence 45666788888888888776
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.92 E-value=1.3e-10 Score=127.42 Aligned_cols=177 Identities=25% Similarity=0.392 Sum_probs=116.3
Q ss_pred cCCccccCCcccceeeccCccccccCcccccCCCCCEEecCCCCCCCccCCccCCCCCCCEEeccCCCCCCCcCcccCCC
Q 001603 573 KFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQV 652 (1046)
Q Consensus 573 ~~p~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~~~~l 652 (1046)
.+|+.+.++..|+.|+|+.|++..+|..+..++ |+.|.+++ ++++.+|+.++..
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-------------------------Lkvli~sN-Nkl~~lp~~ig~~ 165 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-------------------------LKVLIVSN-NKLTSLPEEIGLL 165 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-------------------------ceeEEEec-CccccCCcccccc
Confidence 344555555555555555555555555444333 44444444 3455566667777
Q ss_pred CCCceeeccCccccCCCcchhhccCCceeecCCCCCCCCCCCcccCcccccccCcCCcccccCCCccCCCCCCEEecCCC
Q 001603 653 ESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDC 732 (1046)
Q Consensus 653 ~~L~~L~Ls~n~l~~~p~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n 732 (1046)
..|..||.+.|.+..+|+.+..+.+|+.|++..|..... |+.+..| .|..||+|+|
T Consensus 166 ~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~l-----------------------p~El~~L-pLi~lDfScN 221 (722)
T KOG0532|consen 166 PTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDL-----------------------PEELCSL-PLIRLDFSCN 221 (722)
T ss_pred hhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhC-----------------------CHHHhCC-ceeeeecccC
Confidence 777778888888888888888888888887777664432 4444533 4888999999
Q ss_pred CCCCCCCcccccCcCCCCeeeCCCCCCcccchhh---hhccccCeeccccccccccCCCCCCCCceeecCCCc
Q 001603 733 GLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASI---NSLFNLGQLDLEDCKRLQSMPQLPSNLYEVQVNGCA 802 (1046)
Q Consensus 733 ~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i---~~l~~L~~L~L~~c~~l~~ip~lp~~L~~L~~~~C~ 802 (1046)
++ ..||-.|..|..|++|-|.+|.+++-|+.| +...-.++|+..-|+ ...-+.++..++=.....|.
T Consensus 222 ki--s~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q-~~~a~~~~t~~RP~~~~~c~ 291 (722)
T KOG0532|consen 222 KI--SYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ-SGGALDLYTTLRPRHFSSCH 291 (722)
T ss_pred ce--eecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc-ccCCcccccccCCcccCCcc
Confidence 98 469999999999999999999999888765 445567888888884 33333444444433333443
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.89 E-value=2e-09 Score=124.00 Aligned_cols=182 Identities=35% Similarity=0.500 Sum_probs=139.3
Q ss_pred cCCcccceeeccCccccccCcccccCC-CCCEEecCCCCCCCccCCccCCCCCCCEEeccCCCCCCCcCcccCCCCCCce
Q 001603 579 GSMKDLMELFLDGTSIAEVPSSIELLT-GLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEE 657 (1046)
Q Consensus 579 ~~l~~L~~L~L~~~~i~~lp~~l~~l~-~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~~~~l~~L~~ 657 (1046)
..++.++.|.+.++.+++++.....+. +|+.|++++|.+.. +|..+..+++|+.|++++|+... +|...+..++|+.
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~ 190 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNN 190 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhh-hhhhhhccccccccccCCchhhh-hhhhhhhhhhhhh
Confidence 344667777788888887777777774 78888888766543 33456778888888888876544 4444446788999
Q ss_pred eeccCccccCCCcchhhccCCceeecCCCCCCCCCCCcccCcccccccCcCCcccccCCCccCCCCCCEEecCCCCCCCC
Q 001603 658 LDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEG 737 (1046)
Q Consensus 658 L~Ls~n~l~~~p~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 737 (1046)
|++++|.++.+|..+..+..|++|.+++|..... +..+..+.++..|.+.+|.+ .
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~-----------------------~~~~~~~~~l~~l~l~~n~~--~ 245 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNNSIIEL-----------------------LSSLSNLKNLSGLELSNNKL--E 245 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCCcceec-----------------------chhhhhcccccccccCCcee--e
Confidence 9999999999988887778899999998853322 45577788888888888887 3
Q ss_pred CCcccccCcCCCCeeeCCCCCCcccchhhhhccccCeeccccccccccCCC
Q 001603 738 AIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMPQ 788 (1046)
Q Consensus 738 ~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~ip~ 788 (1046)
.++..++.+++|+.|++++|.++.++. +..+.+|+.|+++++.....+|.
T Consensus 246 ~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 246 DLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred eccchhccccccceecccccccccccc-ccccCccCEEeccCccccccchh
Confidence 347788889999999999999999886 88899999999999877665554
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.88 E-value=1.4e-10 Score=120.38 Aligned_cols=246 Identities=22% Similarity=0.233 Sum_probs=139.5
Q ss_pred ccCCCCCeEeccccccc-----ccchhcccCCCCcEEecCCCCCC---cc-------chhhhhccCcCcEEeccCCCCCC
Q 001603 508 GSMNDLSELFLDRTTIE-----ELPLSIQHLTGLVLLNLKDCKNL---KS-------LSHTLRRLQCLKNLTLSGCSKLK 572 (1046)
Q Consensus 508 ~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~L~~~~~~---~~-------l~~~l~~l~~L~~L~L~~~~~~~ 572 (1046)
..+..++.+++++|.+. .+...+.+.++|+..++++..-- .. +..++...++|++|+||.|.+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 34455555555555554 23344555556666666542211 11 22344455566666666665554
Q ss_pred cCCccc----cCCcccceeeccCccccccCcc-cccCCCCCEEecCCCCCCCccCCccCCCCCCCEEeccCCCCCC----
Q 001603 573 KFPESL----GSMKDLMELFLDGTSIAEVPSS-IELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQ---- 643 (1046)
Q Consensus 573 ~~p~~~----~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~---- 643 (1046)
..+..+ ..+..|++|+|.+|.+...-.. ++. .|..|. ...-...-+.|+++...+|+.-.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ga~ 175 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLENGGAT 175 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeeccccccccHH
Confidence 443322 2344555555555544421110 000 000000 01112335677777777765432
Q ss_pred CcCcccCCCCCCceeeccCccccCC-----CcchhhccCCceeecCCCCCCCCCCCcccCcccccccCcCCcccccCCCc
Q 001603 644 NVPETLGQVESLEELDISGTAIRRP-----PSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSL 718 (1046)
Q Consensus 644 ~~~~~~~~l~~L~~L~Ls~n~l~~~-----p~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 718 (1046)
.+...|...+.|+.+.+..|.|..- -..+..+++|+.|+|..|.....-. ..+...+
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs------------------~~LakaL 237 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS------------------VALAKAL 237 (382)
T ss_pred HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH------------------HHHHHHh
Confidence 2334566678888888888876643 3456678888888888875432110 1123346
Q ss_pred cCCCCCCEEecCCCCCCCCCCc---ccc-cCcCCCCeeeCCCCCCc-----ccchhhhhccccCeeccccccc
Q 001603 719 SGLHSLSKLDLSDCGLGEGAIP---NDI-GNLCSLKQLNLSQNNFV-----TLPASINSLFNLGQLDLEDCKR 782 (1046)
Q Consensus 719 ~~l~~L~~L~Ls~n~l~~~~ip---~~l-~~l~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~~ 782 (1046)
+.+++|++|++++|.+.+..-- ..+ ...|+|+.|.|.+|.++ .+-.++...+.|+.|+|++|..
T Consensus 238 ~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 238 SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 6778999999999988543221 222 34789999999999987 3445677789999999999954
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.85 E-value=1.3e-09 Score=110.16 Aligned_cols=110 Identities=25% Similarity=0.199 Sum_probs=79.0
Q ss_pred ccccccCCCCCeEecccccccccchhcccCCCCcEEecCCCCCCccchhhhhccCcCcEEeccCCCCCCcCCccccCCcc
Q 001603 504 LEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKD 583 (1046)
Q Consensus 504 ~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~ 583 (1046)
.........|++++|++|.|+.+..+..-.|.++.|+++.|.....- .+..+++|+.|+|++|. +..+..+-.++.|
T Consensus 277 ~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGN 353 (490)
T KOG1259|consen 277 LVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNL-LAECVGWHLKLGN 353 (490)
T ss_pred EEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccch-hHhhhhhHhhhcC
Confidence 33444567789999999999999999888999999999988765442 26778888888888764 3344445556677
Q ss_pred cceeeccCccccccCcccccCCCCCEEecCCCCC
Q 001603 584 LMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSN 617 (1046)
Q Consensus 584 L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~ 617 (1046)
++.|.|.+|.+..+ +.++.+-+|..|++++|++
T Consensus 354 IKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 354 IKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred EeeeehhhhhHhhh-hhhHhhhhheeccccccch
Confidence 77788887777765 3455666666666666554
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.85 E-value=9e-11 Score=128.53 Aligned_cols=192 Identities=24% Similarity=0.315 Sum_probs=153.3
Q ss_pred CcccceeeccCccccccCcccccCCCCCEEecCCCCCCCccCCccCCCCCCCEEeccCCCCCCCcCcccCCCCCCceeec
Q 001603 581 MKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDI 660 (1046)
Q Consensus 581 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~~~~l~~L~~L~L 660 (1046)
+.--...+++.|.+.++|..+..+..|+.|.+..|.+ ..+|..++++..|+.|+|+.|. +..+|..++.++ |+.|-+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEE
Confidence 3344556777788888887777777777777776554 4567777888888888888865 445677777665 999999
Q ss_pred cCccccCCCcchhhccCCceeecCCCCCCCCCCCcccCcccccccCcCCcccccCCCccCCCCCCEEecCCCCCCCCCCc
Q 001603 661 SGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIP 740 (1046)
Q Consensus 661 s~n~l~~~p~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip 740 (1046)
++|+++.+|..++....|..|+.+.|.+.+. ++.++++.+|+.|.+..|++ ..+|
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~sl-----------------------psql~~l~slr~l~vrRn~l--~~lp 205 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQSL-----------------------PSQLGYLTSLRDLNVRRNHL--EDLP 205 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhhhhhc-----------------------hHHhhhHHHHHHHHHhhhhh--hhCC
Confidence 9999999999999999999999999886543 67789999999999999998 4588
Q ss_pred ccccCcCCCCeeeCCCCCCcccchhhhhccccCeeccccccccccCCC------CCCCCceeecCCCc
Q 001603 741 NDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMPQ------LPSNLYEVQVNGCA 802 (1046)
Q Consensus 741 ~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~ip~------lp~~L~~L~~~~C~ 802 (1046)
..+. .-.|..||+|+|+++.||..|.+|..|++|-|.+|+ |++-|. .-.=.++|++.-|.
T Consensus 206 ~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 206 EELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred HHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhcc
Confidence 8888 557999999999999999999999999999999997 455553 11224677887774
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.84 E-value=3.8e-09 Score=121.64 Aligned_cols=194 Identities=27% Similarity=0.348 Sum_probs=120.3
Q ss_pred EEEeCCccCCCchhccc--cCccEEEecCCCCCCCCCCCCCC--CceEEEcCCCCchhhcccccCCCCCcEEEcCCCcCC
Q 001603 354 LLKIDNLQLPEGLEYLS--NKLRLLDWHRYPLKSLPSNFQLE--KTVEFNMCYSRIEELWNEIKYLNMLKVMKLSHSQNL 429 (1046)
Q Consensus 354 ~L~l~~~~l~~~~~~l~--~~Lr~L~l~~~~l~~lp~~~~l~--~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~ 429 (1046)
.|++..+.+......+. ..+..|++.++++.++|....+. +|++|++++|.++.+|..+..+++|+.|++++|++.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 46677776633222222 25888888999999888888554 899999999999988888888899999999888865
Q ss_pred CCCCCCCCCCCCCEEEeeCCCCCccccccccCCCCccEEeccCCCCCCccCCcCCccccceeeccCCcCCcccccccccc
Q 001603 430 IKTPDFTGVPNLEELILEGCTRLHEIHPSLLLHSKLVILNLKDCTSLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAGS 509 (1046)
Q Consensus 430 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~~~~~~~~ 509 (1046)
..++....+++|+.|++++| ....+|..+..+..|++|.++++..+..+.....+..+..+.
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~----------------- 238 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLE----------------- 238 (394)
T ss_pred hhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccc-----------------
Confidence 55555557888888888885 344555555556667777777654333333333344444444
Q ss_pred CCCCCeEecccccccccchhcccCCCCcEEecCCCCCCccchhhhhccCcCcEEeccCCCCCCcCC
Q 001603 510 MNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFP 575 (1046)
Q Consensus 510 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~p 575 (1046)
+..|.+..++..+..+++++.|++++|....... +..+.+|+.|+++++......|
T Consensus 239 --------l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 239 --------LSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred --------cCCceeeeccchhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 4444444444444455555555555544333322 4455555555555554444433
No 38
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.80 E-value=4e-08 Score=108.66 Aligned_cols=244 Identities=18% Similarity=0.145 Sum_probs=131.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccc----cchHHHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNV----DDGINIIGS 77 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~----~~~~~~i~~ 77 (1046)
+.|+|++|+|||+||+++++.+...+. +.. .... .. ...+ ...+..+....-.-..+. ....+.+..
T Consensus 33 ~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~~-~~~~-~~---~~~l-~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~ 103 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANEMGVNLK---ITS-GPAL-EK---PGDL-AAILTNLEEGDVLFIDEIHRLSPAVEELLYP 103 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEE---Eec-cchh-cC---chhH-HHHHHhcccCCEEEEehHhhhCHHHHHHhhH
Confidence 679999999999999999998764422 111 0000 01 1111 111222211000000000 011222333
Q ss_pred hhcCCeEEEEEecCCChHHHHHHhhccCCCCCCCEEEEEeCChhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 78 RLRQKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 78 ~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
.+.+.+..+|+|+..+..++... ..+..-|.+||+...+.......-...+++++++.+|..+++.+.+.....
T Consensus 104 ~~~~~~~~~v~~~~~~~~~~~~~------~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~ 177 (305)
T TIGR00635 104 AMEDFRLDIVIGKGPSARSVRLD------LPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV 177 (305)
T ss_pred HHhhhheeeeeccCccccceeec------CCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC
Confidence 44444555555554444333211 123455666777654433221111227899999999999999988764332
Q ss_pred CCchHHHHHHHHHHHhCCCchHHHHHhhhcC------C-C--ChHHHHHHHHHHhcCCCCchHHHHhhcccccchhhhhh
Q 001603 158 PMGEYVELSKRVLKYAGGLPLALTVLGSFLN------G-R--SVDLWRSTLKRLKKEPPNRIINILQISFDGLQDLEKKI 228 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~------~-~--~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~ 228 (1046)
.-..+....|++.++|.|-.+..++..+. + . +.+..+. ....+...|.++++.++..
T Consensus 178 --~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~------------~l~~l~~~~~~l~~~~~~~ 243 (305)
T TIGR00635 178 --EIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALK------------ALEMLMIDELGLDEIDRKL 243 (305)
T ss_pred --CcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHH------------HHHHhCCCCCCCCHHHHHH
Confidence 22246678899999999977655554321 0 0 1111111 2222566788899888776
Q ss_pred hc-eeecccCC-CCHHHHHHHHHhcCCCcccchh-heeccceEEEecCC
Q 001603 229 FL-DVACFFKS-WDRDHVEKILEGCGFSPVIGIE-VLIEKSLLTVDDGN 274 (1046)
Q Consensus 229 fl-~~a~f~~~-~~~~~l~~~~~~~g~~~~~~l~-~L~~~~Li~~~~~~ 274 (1046)
+. .++.+..+ ...+.+...+..........++ .|++++||.....+
T Consensus 244 L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g 292 (305)
T TIGR00635 244 LSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRG 292 (305)
T ss_pred HHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCch
Confidence 65 44555433 4566666666554444445567 69999999755443
No 39
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.76 E-value=1.7e-07 Score=107.87 Aligned_cols=221 Identities=16% Similarity=0.181 Sum_probs=127.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccc--eeEEEEechhhhcccCCHHHHHHHHHHHHhhc-cCcccccccchHHHHHHh
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFD--GSTFLANVREKSEKEGSVVSLQKQLLSDLLKL-ADISIWNVDDGINIIGSR 78 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~-~~~~~~~~~~~~~~i~~~ 78 (1046)
+.|+|++|+|||++++.+++.+..+.. ..+++. +... .+...+..+++.++... ......+..+....+.+.
T Consensus 58 ~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-~~~~----~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 132 (394)
T PRK00411 58 VLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN-CQID----RTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEY 132 (394)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-CCcC----CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Confidence 679999999999999999998766542 223332 2222 22566777788877531 111112334455666666
Q ss_pred hc--CCeEEEEEecCCChH------HHHHHhhccCCCCCCCE--EEEEeCChhhHHHhc-----CCCcceEecCCCChHH
Q 001603 79 LR--QKKVLLVIDDVADVE------QLQNLARKRDWFGPGSK--IVITTRDKQLLVAHE-----VDEEHIYNLEVLSNDE 143 (1046)
Q Consensus 79 L~--~kr~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~--IiiTTR~~~~~~~~~-----~~~~~~~~l~~L~~~e 143 (1046)
+. +++++||||+++... .+..+...... .++++ +|.++.+..+..... .-....+.+++++.++
T Consensus 133 l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e 211 (394)
T PRK00411 133 LDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADE 211 (394)
T ss_pred HHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHH
Confidence 64 467999999998753 35555443222 13333 566666544322210 1112368999999999
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHHHHHH----hCCCchHHHHHhhhc-----CC---CChHHHHHHHHHHhcCCCCchH
Q 001603 144 ALQLFSMKAFKTRQPMGEYVELSKRVLKY----AGGLPLALTVLGSFL-----NG---RSVDLWRSTLKRLKKEPPNRII 211 (1046)
Q Consensus 144 a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~----~~GlPLal~~~~~~L-----~~---~~~~~w~~~l~~l~~~~~~~i~ 211 (1046)
..+++..++...-.+..-..+..+.+++. .|..+.|+.++-... .+ -+.+.++.++++.. .
T Consensus 212 ~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~-------~ 284 (394)
T PRK00411 212 IFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE-------I 284 (394)
T ss_pred HHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH-------H
Confidence 99999887632211111112233334333 455677776654321 11 15666777666652 2
Q ss_pred HHHhhcccccchhhhhhhceeecc
Q 001603 212 NILQISFDGLQDLEKKIFLDVACF 235 (1046)
Q Consensus 212 ~~l~~sy~~L~~~~k~~fl~~a~f 235 (1046)
....-.+..||.++|..+..++..
T Consensus 285 ~~~~~~~~~L~~~~k~~L~ai~~~ 308 (394)
T PRK00411 285 VHLSEVLRTLPLHEKLLLRAIVRL 308 (394)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 233456789999888777665533
No 40
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.76 E-value=7.8e-09 Score=101.41 Aligned_cols=62 Identities=35% Similarity=0.464 Sum_probs=16.5
Q ss_pred cCCCCCCEEecCCCCCCCCCCcccc-cCcCCCCeeeCCCCCCcccc--hhhhhccccCeeccccccc
Q 001603 719 SGLHSLSKLDLSDCGLGEGAIPNDI-GNLCSLKQLNLSQNNFVTLP--ASINSLFNLGQLDLEDCKR 782 (1046)
Q Consensus 719 ~~l~~L~~L~Ls~n~l~~~~ip~~l-~~l~~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~~ 782 (1046)
..++.|++|++++|.+. .++..+ ..+++|+.|+|++|++..+. ..++.+++|+.|++.+||.
T Consensus 61 ~~L~~L~~L~L~~N~I~--~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 61 PGLPRLKTLDLSNNRIS--SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp ---TT--EEE--SS-----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred cChhhhhhcccCCCCCC--ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 33444455555555442 122222 23445555555555444322 1344455555555555543
No 41
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.71 E-value=4.3e-08 Score=109.08 Aligned_cols=157 Identities=15% Similarity=0.033 Sum_probs=94.7
Q ss_pred CCEEEEEeCChhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhcCC
Q 001603 110 GSKIVITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSFLNG 189 (1046)
Q Consensus 110 gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~ 189 (1046)
.+-|..|||...+.......-...+++++++.++..+++.+.+...... -..+.+..|++.|+|.|-.+..+...+
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~-- 226 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRV-- 226 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHH--
Confidence 3456667775544332211111278999999999999999887654322 233678899999999997655554432
Q ss_pred CChHHHHHHHHHHhcCCC---CchHHHHhhcccccchhhhhhhc-eeecccCC-CCHHHHHHHHHhcCCCcccchh-hee
Q 001603 190 RSVDLWRSTLKRLKKEPP---NRIINILQISFDGLQDLEKKIFL-DVACFFKS-WDRDHVEKILEGCGFSPVIGIE-VLI 263 (1046)
Q Consensus 190 ~~~~~w~~~l~~l~~~~~---~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~l~~~~~~~g~~~~~~l~-~L~ 263 (1046)
..|.... .-..... ......+...+.+|++..++.+. ....|..+ +..+.+...+.......+..++ .|+
T Consensus 227 ---~~~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li 302 (328)
T PRK00080 227 ---RDFAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLI 302 (328)
T ss_pred ---HHHHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHH
Confidence 1111110 0000001 12334456778889888888775 55556544 4667776666554444444566 899
Q ss_pred ccceEEEecCC
Q 001603 264 EKSLLTVDDGN 274 (1046)
Q Consensus 264 ~~~Li~~~~~~ 274 (1046)
+.+||.....+
T Consensus 303 ~~~li~~~~~g 313 (328)
T PRK00080 303 QQGFIQRTPRG 313 (328)
T ss_pred HcCCcccCCch
Confidence 99999765433
No 42
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.70 E-value=8.8e-09 Score=101.04 Aligned_cols=124 Identities=21% Similarity=0.236 Sum_probs=43.0
Q ss_pred CCCCccEEEeCCccCCC--chhccccCccEEEecCCCCCCCCCCCCCCCceEEEcCCCCchhhcccc-cCCCCCcEEEcC
Q 001603 348 QMTNLRLLKIDNLQLPE--GLEYLSNKLRLLDWHRYPLKSLPSNFQLEKTVEFNMCYSRIEELWNEI-KYLNMLKVMKLS 424 (1046)
Q Consensus 348 ~l~~Lr~L~l~~~~l~~--~~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~-~~l~~L~~L~Ls 424 (1046)
+..++|.|++.+|.++. .+.....+|+.|++++|.+++++..-.+++|++|++++|+|+.+.+.+ ..+++|+.|+++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 44567888888888763 444333458888888888888876557888888888888888876555 357888888888
Q ss_pred CCcCCCC--CCCCCCCCCCCEEEeeCCCCCcccc---ccccCCCCccEEecc
Q 001603 425 HSQNLIK--TPDFTGVPNLEELILEGCTRLHEIH---PSLLLHSKLVILNLK 471 (1046)
Q Consensus 425 ~~~~~~~--~~~l~~l~~L~~L~L~~~~~~~~~~---~~l~~l~~L~~L~L~ 471 (1046)
+|++... ...+..+++|+.|+|.+|+....-. ..+..+++|+.||-.
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 8874332 2235667777777777765543211 123345555555543
No 43
>PRK06893 DNA replication initiation factor; Validated
Probab=98.66 E-value=3.2e-07 Score=96.13 Aligned_cols=148 Identities=17% Similarity=0.201 Sum_probs=90.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
+.|||++|+|||+||+++++.+..+...+.|+.... ...... .+.+.++
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~--------~~~~~~----------------------~~~~~~~- 90 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK--------SQYFSP----------------------AVLENLE- 90 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH--------hhhhhH----------------------HHHhhcc-
Confidence 579999999999999999998766555566765210 000000 1111222
Q ss_pred CeEEEEEecCCCh---HHHHH-HhhccCC-CCCCCEEEEEeCCh----------hhHHHhcCCCcceEecCCCChHHHHH
Q 001603 82 KKVLLVIDDVADV---EQLQN-LARKRDW-FGPGSKIVITTRDK----------QLLVAHEVDEEHIYNLEVLSNDEALQ 146 (1046)
Q Consensus 82 kr~LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~IiiTTR~~----------~~~~~~~~~~~~~~~l~~L~~~ea~~ 146 (1046)
+.-+|||||++.. .+|+. +...++. ...|..+||+|.+. .+........ .+++++++.++.++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~--~~~l~~pd~e~~~~ 168 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGE--IYQLNDLTDEQKII 168 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCC--eeeCCCCCHHHHHH
Confidence 2348999999863 33432 2222221 12456665554443 3333333333 89999999999999
Q ss_pred HHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHh
Q 001603 147 LFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLG 184 (1046)
Q Consensus 147 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~ 184 (1046)
++.+.++...- .-.+++..-|++++.|..-++..+-
T Consensus 169 iL~~~a~~~~l--~l~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 169 VLQRNAYQRGI--ELSDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 99999875442 2234667788888887776665443
No 44
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.65 E-value=2e-08 Score=107.99 Aligned_cols=275 Identities=21% Similarity=0.261 Sum_probs=182.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
|.++|.|||||||++-++.. ++..|+...++.+.+...+.. .+.-.+...+.- ...+-+.....+..+..+
T Consensus 17 vtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~----~v~~~~ag~~gl----~~~~g~~~~~~~~~~~~~ 87 (414)
T COG3903 17 VTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPA----LVFPTLAGALGL----HVQPGDSAVDTLVRRIGD 87 (414)
T ss_pred eeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchh----HhHHHHHhhccc----ccccchHHHHHHHHHHhh
Confidence 68999999999999999999 888898887777666654422 222222222321 112222344456677788
Q ss_pred CeEEEEEecCCChH-HHHHHhhccCCCCCCCEEEEEeCChhhHHHhcCCCcceEecCCCChH-HHHHHHHHhhcCCCCC-
Q 001603 82 KKVLLVIDDVADVE-QLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEVLSND-EALQLFSMKAFKTRQP- 158 (1046)
Q Consensus 82 kr~LlVlDdv~~~~-~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~~~~~~- 158 (1046)
+|.++|+||-.+.. +-..+...+....+.-+|+.|+|... .+.....+.+..|+.. ++.++|...+.....+
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~-----l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAI-----LVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhh-----cccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 99999999987653 23333333333456678899999743 3444448899999876 7999998876433221
Q ss_pred --CchHHHHHHHHHHHhCCCchHHHHHhhhcCCCChHHHHHHHHH----HhcC------CCCchHHHHhhcccccchhhh
Q 001603 159 --MGEYVELSKRVLKYAGGLPLALTVLGSFLNGRSVDLWRSTLKR----LKKE------PPNRIINILQISFDGLQDLEK 226 (1046)
Q Consensus 159 --~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~~~~~w~~~l~~----l~~~------~~~~i~~~l~~sy~~L~~~~k 226 (1046)
.........+|.++.+|.|++|...++..+.-..++...-++. +... ........+.+||.-|..-++
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~ 242 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWER 242 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHH
Confidence 2333466789999999999999999998887665554444332 2222 124456678999999999999
Q ss_pred hhhceeecccCCCCHHHHHHHHHhcCCCc-------ccchhheeccceEEEec---CCeEEehHHHHHHHHHHHhh
Q 001603 227 KIFLDVACFFKSWDRDHVEKILEGCGFSP-------VIGIEVLIEKSLLTVDD---GNRLWMHDLLQELGHQIVQR 292 (1046)
Q Consensus 227 ~~fl~~a~f~~~~~~~~l~~~~~~~g~~~-------~~~l~~L~~~~Li~~~~---~~~~~mHdli~e~~~~i~~~ 292 (1046)
..|..++.|...|+.+. ..+.+.|-.. -..+..+++++++...+ .-.++.-+..+.|+.+.+.+
T Consensus 243 ~~~~rLa~~~g~f~~~l--~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r 316 (414)
T COG3903 243 ALFGRLAVFVGGFDLGL--ALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHR 316 (414)
T ss_pred HHhcchhhhhhhhcccH--HHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999887762 3333333221 22366788888887654 22456666666666665543
No 45
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.62 E-value=6.7e-07 Score=104.12 Aligned_cols=273 Identities=19% Similarity=0.242 Sum_probs=163.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCc------------ccccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADI------------SIWNV 68 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~------------~~~~~ 68 (1046)
++.|..++|.|||||+.+...+ ..+=..+.|+. .++.......+...++..+...... +..+.
T Consensus 39 L~li~APAGfGKttl~aq~~~~-~~~~~~v~Wls----lde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l 113 (894)
T COG2909 39 LILISAPAGFGKTTLLAQWREL-AADGAAVAWLS----LDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSL 113 (894)
T ss_pred EEEEeCCCCCcHHHHHHHHHHh-cCcccceeEee----cCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccH
Confidence 3789999999999999999883 33445678887 3333334667777777777621111 00111
Q ss_pred cchHHHHHHhhc--CCeEEEEEecCCCh------HHHHHHhhccCCCCCCCEEEEEeCChhhHHHh--cCCCcceEecC-
Q 001603 69 DDGINIIGSRLR--QKKVLLVIDDVADV------EQLQNLARKRDWFGPGSKIVITTRDKQLLVAH--EVDEEHIYNLE- 137 (1046)
Q Consensus 69 ~~~~~~i~~~L~--~kr~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~--~~~~~~~~~l~- 137 (1046)
....+.+..-+. .++..+||||..-. +.++.+... ..++-..|||||.+.-+... .+. +...++.
T Consensus 114 ~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~~l~lvv~SR~rP~l~la~lRlr-~~llEi~~ 189 (894)
T COG2909 114 ESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APENLTLVVTSRSRPQLGLARLRLR-DELLEIGS 189 (894)
T ss_pred HHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCCCeEEEEEeccCCCCcccceeeh-hhHHhcCh
Confidence 222333333332 57899999998532 335555544 34788999999987532111 111 1133332
Q ss_pred ---CCChHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhcCCC-ChHHHHHHHHHHhcCCCCchHHH
Q 001603 138 ---VLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSFLNGR-SVDLWRSTLKRLKKEPPNRIINI 213 (1046)
Q Consensus 138 ---~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~-~~~~w~~~l~~l~~~~~~~i~~~ 213 (1046)
.++.+|+.++|...... +-.+.-++.+.++.+|-+-|+..++=.+++. +.+.-...+. .. .+.+.+-
T Consensus 190 ~~Lrf~~eE~~~fl~~~~~l-----~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~Ls---G~-~~~l~dY 260 (894)
T COG2909 190 EELRFDTEEAAAFLNDRGSL-----PLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLS---GA-ASHLSDY 260 (894)
T ss_pred HhhcCChHHHHHHHHHcCCC-----CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhcc---ch-HHHHHHH
Confidence 57899999999876521 2223457889999999999999988877733 3222111111 11 1122221
Q ss_pred -HhhcccccchhhhhhhceeecccCCCCHHHHHHHHHhcCCCcccchhheeccceEE--Eec-CCeEEehHHHHHHHHHH
Q 001603 214 -LQISFDGLQDLEKKIFLDVACFFKSWDRDHVEKILEGCGFSPVIGIEVLIEKSLLT--VDD-GNRLWMHDLLQELGHQI 289 (1046)
Q Consensus 214 -l~~sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~~l~~L~~~~Li~--~~~-~~~~~mHdli~e~~~~i 289 (1046)
..--+|.||++.|..++-+|++.. +. +.+...+.+.+- ...-++.|-.++|+- .++ .++|..|.++.||-+..
T Consensus 261 L~eeVld~Lp~~l~~FLl~~svl~~-f~-~eL~~~Ltg~~n-g~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r 337 (894)
T COG2909 261 LVEEVLDRLPPELRDFLLQTSVLSR-FN-DELCNALTGEEN-GQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQR 337 (894)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhHHH-hh-HHHHHHHhcCCc-HHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhh
Confidence 223468999999999999998843 11 122222221110 011266777777654 232 67899999999999887
Q ss_pred HhhcC
Q 001603 290 VQRQS 294 (1046)
Q Consensus 290 ~~~e~ 294 (1046)
...+.
T Consensus 338 ~~~~~ 342 (894)
T COG2909 338 LQREL 342 (894)
T ss_pred hcccc
Confidence 76643
No 46
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.61 E-value=2.3e-07 Score=98.51 Aligned_cols=178 Identities=20% Similarity=0.188 Sum_probs=87.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHH------HHHHHHHHhhc-cCc--------cc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSL------QKQLLSDLLKL-ADI--------SI 65 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l------~~~ll~~l~~~-~~~--------~~ 65 (1046)
.+.|+|+.|+|||+|++.+.+.....-...+|+.......... .... ...+...+... .+. ..
T Consensus 22 ~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 22 HILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESS--LRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHH--HHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred EEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhH--HHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 3789999999999999999998754322344444322211100 1111 11111222211 010 00
Q ss_pred ccccchHHHHHHhhc--CCeEEEEEecCCChH-----------HHHHHhhccCCCCCCCEEEEEeCChhhHHHh------
Q 001603 66 WNVDDGINIIGSRLR--QKKVLLVIDDVADVE-----------QLQNLARKRDWFGPGSKIVITTRDKQLLVAH------ 126 (1046)
Q Consensus 66 ~~~~~~~~~i~~~L~--~kr~LlVlDdv~~~~-----------~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~------ 126 (1046)
.........+.+.+. +++++||+||++... .+..+...... ...-.+|+++....+....
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~v~~~S~~~~~~~~~~~~~~ 178 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQNVSIVITGSSDSLMEEFLDDKSP 178 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TTEEEEEEESSHHHHHHTT-TTST
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCCceEEEECCchHHHHHhhcccCc
Confidence 122233344444443 356999999997655 12222222221 2334455555555444330
Q ss_pred cCCCcceEecCCCChHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 001603 127 EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTV 182 (1046)
Q Consensus 127 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 182 (1046)
.......+.|++|+.+++++++...+-.. ..-+...+..++|+..+||+|..|..
T Consensus 179 ~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 179 LFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred cccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 11222359999999999999999865433 11122345678999999999998864
No 47
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.61 E-value=1.7e-06 Score=98.56 Aligned_cols=220 Identities=14% Similarity=0.131 Sum_probs=119.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccc-----e-eEEEEechhhhcccCCHHHHHHHHHHHHhh-ccCc--ccccccchH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFD-----G-STFLANVREKSEKEGSVVSLQKQLLSDLLK-LADI--SIWNVDDGI 72 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~-----~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~-~~~~--~~~~~~~~~ 72 (1046)
+.|+|++|+|||++++++++.+..... . .+++. +... .+...+...++.++.. .... ...+..+..
T Consensus 43 i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in-~~~~----~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 117 (365)
T TIGR02928 43 VFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN-CQIL----DTLYQVLVELANQLRGSGEEVPTTGLSTSEVF 117 (365)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE-CCCC----CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHH
Confidence 689999999999999999987654322 1 23333 2222 1255677777777742 1111 001222334
Q ss_pred HHHHHhhc--CCeEEEEEecCCChH-----HHHHHhhccCC-CC--CCCEEEEEeCChhhHHHh----c-CCCcceEecC
Q 001603 73 NIIGSRLR--QKKVLLVIDDVADVE-----QLQNLARKRDW-FG--PGSKIVITTRDKQLLVAH----E-VDEEHIYNLE 137 (1046)
Q Consensus 73 ~~i~~~L~--~kr~LlVlDdv~~~~-----~~~~l~~~~~~-~~--~gs~IiiTTR~~~~~~~~----~-~~~~~~~~l~ 137 (1046)
..+.+.+. +++++||||++|... .+..+.....+ .. ....+|.+|......... . .-....+.++
T Consensus 118 ~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~ 197 (365)
T TIGR02928 118 RRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFP 197 (365)
T ss_pred HHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeC
Confidence 45555553 578999999998761 23344332111 11 223445555444321111 0 0011368999
Q ss_pred CCChHHHHHHHHHhhcC---CCCCCchHHHHHHHHHHHhCCCchHHHHHhhh-c-----CC---CChHHHHHHHHHHhcC
Q 001603 138 VLSNDEALQLFSMKAFK---TRQPMGEYVELSKRVLKYAGGLPLALTVLGSF-L-----NG---RSVDLWRSTLKRLKKE 205 (1046)
Q Consensus 138 ~L~~~ea~~Lf~~~a~~---~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~-L-----~~---~~~~~w~~~l~~l~~~ 205 (1046)
+++.+|..+++..++.. ...-.++..+...+++....|.|..+..+... . .+ -+.+..+.+.+.+.
T Consensus 198 p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~-- 275 (365)
T TIGR02928 198 PYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE-- 275 (365)
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH--
Confidence 99999999999988631 12223333445566777778888544332211 1 11 24555555555542
Q ss_pred CCCchHHHHhhcccccchhhhhhhceee
Q 001603 206 PPNRIINILQISFDGLQDLEKKIFLDVA 233 (1046)
Q Consensus 206 ~~~~i~~~l~~sy~~L~~~~k~~fl~~a 233 (1046)
.....-...+||.++|.++..++
T Consensus 276 -----~~~~~~~i~~l~~~~~~~l~ai~ 298 (365)
T TIGR02928 276 -----KDRLLELIRGLPTHSKLVLLAIA 298 (365)
T ss_pred -----HHHHHHHHHcCCHHHHHHHHHHH
Confidence 12333455688887776665444
No 48
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.57 E-value=1.9e-07 Score=115.27 Aligned_cols=209 Identities=15% Similarity=0.206 Sum_probs=130.0
Q ss_pred cCCeEEEEEecCC-Ch----HHHHHHhhccC--CC-CCCCEEEEEeCChhhHHHhcCCCcceEecCCCChHHHHHHHHHh
Q 001603 80 RQKKVLLVIDDVA-DV----EQLQNLARKRD--WF-GPGSKIVITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMK 151 (1046)
Q Consensus 80 ~~kr~LlVlDdv~-~~----~~~~~l~~~~~--~~-~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 151 (1046)
+.++.++|+||+. -. +-++.+..... .+ ....-.+.|.+...-...........+.+.||+..+.-++....
T Consensus 152 ~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~ 231 (849)
T COG3899 152 EEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAAT 231 (849)
T ss_pred ccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHH
Confidence 3569999999994 22 22444443322 00 01122333444332112222233348999999999999998877
Q ss_pred hcCCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhcCCC-------ChHHHHHHHHHHhcCC-CCchHHHHhhcccccch
Q 001603 152 AFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSFLNGR-------SVDLWRSTLKRLKKEP-PNRIINILQISFDGLQD 223 (1046)
Q Consensus 152 a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~-------~~~~w~~~l~~l~~~~-~~~i~~~l~~sy~~L~~ 223 (1046)
..... ....+....|+++..|+|+.+..+-..+... ....|..-...+.... .+.+.+.+..-.+.||.
T Consensus 232 l~~~~---~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~ 308 (849)
T COG3899 232 LGCTK---LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPG 308 (849)
T ss_pred hCCcc---cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCH
Confidence 64422 2234678899999999999999998888653 3344554433333222 13356678889999999
Q ss_pred hhhhhhceeecccCCCCHHHHHHHHHhcCCCcccc-hhheeccceEEEec--------CC---eEEehHHHHHHHHHHHh
Q 001603 224 LEKKIFLDVACFFKSWDRDHVEKILEGCGFSPVIG-IEVLIEKSLLTVDD--------GN---RLWMHDLLQELGHQIVQ 291 (1046)
Q Consensus 224 ~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~~-l~~L~~~~Li~~~~--------~~---~~~mHdli~e~~~~i~~ 291 (1046)
..|+++...||+...|+.+.+..++.........+ ++.|.+ ++|.+.. .. +-..||.+|+.+-....
T Consensus 309 ~t~~Vl~~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e-~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~ 387 (849)
T COG3899 309 TTREVLKAAACIGNRFDLDTLAALAEDSPALEAAALLDALQE-GLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIP 387 (849)
T ss_pred HHHHHHHHHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHh-hceeccccccccccccchhhHHhhHHHHHHHHhccCc
Confidence 99999999999999999888888777533332222 333333 3333311 11 23689999998876544
Q ss_pred h
Q 001603 292 R 292 (1046)
Q Consensus 292 ~ 292 (1046)
+
T Consensus 388 ~ 388 (849)
T COG3899 388 E 388 (849)
T ss_pred h
Confidence 3
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.51 E-value=1.7e-08 Score=105.15 Aligned_cols=112 Identities=22% Similarity=0.249 Sum_probs=54.2
Q ss_pred cccCCCCcEEecCCCCCCc----cchhhhhccCcCcEEeccCCCCCCc----CCccccCCcccceeeccCccccc-----
Q 001603 530 IQHLTGLVLLNLKDCKNLK----SLSHTLRRLQCLKNLTLSGCSKLKK----FPESLGSMKDLMELFLDGTSIAE----- 596 (1046)
Q Consensus 530 ~~~l~~L~~L~L~~~~~~~----~l~~~l~~l~~L~~L~L~~~~~~~~----~p~~~~~l~~L~~L~L~~~~i~~----- 596 (1046)
+...+.|+.+.+..|.+.. .+...+..+++|+.|+|..|.+... +...+..+++|+.|++++|.++.
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence 3334444444444443321 1223344445555555555443322 12233344455555555554441
Q ss_pred cCccc-ccCCCCCEEecCCCCCCCc----cCCccCCCCCCCEEeccCCCC
Q 001603 597 VPSSI-ELLTGLQLLNLNNCSNLVR----LPSCINGLRSLKTLNLSGCSK 641 (1046)
Q Consensus 597 lp~~l-~~l~~L~~L~L~~~~~~~~----l~~~~~~l~~L~~L~Ls~c~~ 641 (1046)
+-..+ ...|+|+.|.+.+|.+... +...+...|.|+.|+|++|..
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 11111 3356777777777766532 223344567777888887765
No 50
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.51 E-value=4.5e-07 Score=96.88 Aligned_cols=216 Identities=19% Similarity=0.260 Sum_probs=117.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcCC
Q 001603 3 GIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQK 82 (1046)
Q Consensus 3 ~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k 82 (1046)
-.||++|+||||||+.+.......|....-+ ...+.++.+-+ ++- -+.+..++
T Consensus 52 Il~GPPG~GKTTlA~liA~~~~~~f~~~sAv---------~~gvkdlr~i~-e~a-----------------~~~~~~gr 104 (436)
T COG2256 52 ILWGPPGTGKTTLARLIAGTTNAAFEALSAV---------TSGVKDLREII-EEA-----------------RKNRLLGR 104 (436)
T ss_pred EEECCCCCCHHHHHHHHHHhhCCceEEeccc---------cccHHHHHHHH-HHH-----------------HHHHhcCC
Confidence 4799999999999999999877766532211 11144333222 111 12233589
Q ss_pred eEEEEEecCCC--hHHHHHHhhccCCCCCCCEEEE--EeCChhhHHHhc-CCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 83 KVLLVIDDVAD--VEQLQNLARKRDWFGPGSKIVI--TTRDKQLLVAHE-VDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 83 r~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Iii--TTR~~~~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+.+|++|.|.. ..|-+.|++. ...|.-|+| ||.+........ .....++++++|+.+|-.+++.+-+.....
T Consensus 105 ~tiLflDEIHRfnK~QQD~lLp~---vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~r 181 (436)
T COG2256 105 RTILFLDEIHRFNKAQQDALLPH---VENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEER 181 (436)
T ss_pred ceEEEEehhhhcChhhhhhhhhh---hcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhc
Confidence 99999999964 3455556554 347777776 555554322111 122348999999999999999884322221
Q ss_pred CCc-----hHHHHHHHHHHHhCCCchHH----HHHhhhcCCC---ChHHHHHHHHHHhcCC------CCchHHHHhhccc
Q 001603 158 PMG-----EYVELSKRVLKYAGGLPLAL----TVLGSFLNGR---SVDLWRSTLKRLKKEP------PNRIINILQISFD 219 (1046)
Q Consensus 158 ~~~-----~~~~~~~~i~~~~~GlPLal----~~~~~~L~~~---~~~~w~~~l~~l~~~~------~~~i~~~l~~sy~ 219 (1046)
.-+ -.++....++..++|--.+. .+++..-... ..+..++.+++-...- .-++..++.-|..
T Consensus 182 gl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvR 261 (436)
T COG2256 182 GLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVR 261 (436)
T ss_pred CCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhc
Confidence 111 22356667888888865443 2222222221 2344444443321111 1235556666666
Q ss_pred ccchhhhhhhceeecccCCCCHHHHHHHHH
Q 001603 220 GLQDLEKKIFLDVACFFKSWDRDHVEKILE 249 (1046)
Q Consensus 220 ~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~ 249 (1046)
+-+++.- .+...-++-.|.+...+.|.+.
T Consensus 262 GSD~dAA-LyylARmi~~GeDp~yiARRlv 290 (436)
T COG2256 262 GSDPDAA-LYYLARMIEAGEDPLYIARRLV 290 (436)
T ss_pred cCCcCHH-HHHHHHHHhcCCCHHHHHHHHH
Confidence 6554432 1222223344455555554443
No 51
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.50 E-value=1.8e-06 Score=91.06 Aligned_cols=149 Identities=20% Similarity=0.269 Sum_probs=88.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
|.|+|+.|+||||+|+.+++..........++. +.. +.... .. +.+.+.+
T Consensus 41 lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~----------~~~~~-~~------------------~~~~~~~ 90 (226)
T TIGR03420 41 LYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAE----------LAQAD-PE------------------VLEGLEQ 90 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHH----------HHHhH-HH------------------HHhhccc
Confidence 679999999999999999987655444445554 111 11110 00 1111222
Q ss_pred CeEEEEEecCCChH---H-HHHHhhccCC-CCCCCEEEEEeCChh---------hHHHhcCCCcceEecCCCChHHHHHH
Q 001603 82 KKVLLVIDDVADVE---Q-LQNLARKRDW-FGPGSKIVITTRDKQ---------LLVAHEVDEEHIYNLEVLSNDEALQL 147 (1046)
Q Consensus 82 kr~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~IiiTTR~~~---------~~~~~~~~~~~~~~l~~L~~~ea~~L 147 (1046)
.-+|||||++... . .+.+...+.. ...+.++|+||+... +...... ...+++.+++.+|...+
T Consensus 91 -~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~--~~~i~l~~l~~~e~~~~ 167 (226)
T TIGR03420 91 -ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAW--GLVFQLPPLSDEEKIAA 167 (226)
T ss_pred -CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhc--CeeEecCCCCHHHHHHH
Confidence 2389999997643 2 2233322211 123457888887532 1111111 23799999999999999
Q ss_pred HHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHhh
Q 001603 148 FSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGS 185 (1046)
Q Consensus 148 f~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~ 185 (1046)
+...+-+... .-..+..+.+++.+.|+|..+..+..
T Consensus 168 l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 168 LQSRAARRGL--QLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 8876532221 12235667788889999988876643
No 52
>PF13173 AAA_14: AAA domain
Probab=98.43 E-value=6.8e-07 Score=84.43 Aligned_cols=120 Identities=18% Similarity=0.174 Sum_probs=76.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLR 80 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 80 (1046)
++.|.|+-|+||||+++++++... .....+++. .... ...... ..+ ..+.+.+...
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~-------~~~~~~--------------~~~-~~~~~~~~~~ 59 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDP-------RDRRLA--------------DPD-LLEYFLELIK 59 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCH-------HHHHHh--------------hhh-hHHHHHHhhc
Confidence 588999999999999999998765 223344443 1111 100000 000 1233333334
Q ss_pred CCeEEEEEecCCChHHHHHHhhccCCCCCCCEEEEEeCChhhHHHhc----CCCcceEecCCCChHHH
Q 001603 81 QKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQLLVAHE----VDEEHIYNLEVLSNDEA 144 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~----~~~~~~~~l~~L~~~ea 144 (1046)
.++.+|+||+|....+|......+...++..+|++|+.......... ......+++.||+..|-
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 47789999999998888877776665566789999999887653311 12224689999998773
No 53
>PRK08727 hypothetical protein; Validated
Probab=98.37 E-value=6.8e-06 Score=86.31 Aligned_cols=144 Identities=17% Similarity=0.129 Sum_probs=86.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
|.|+|..|+|||+||+++++....+...+.|+. ..+....+.. +.+.+ .
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-----------~~~~~~~~~~-------------------~~~~l-~ 92 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-----------LQAAAGRLRD-------------------ALEAL-E 92 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-----------HHHhhhhHHH-------------------HHHHH-h
Confidence 789999999999999999987766654556665 1111111111 11111 2
Q ss_pred CeEEEEEecCCCh---HHHH-HHhhccCC-CCCCCEEEEEeCChh---------hHHHhcCCCcceEecCCCChHHHHHH
Q 001603 82 KKVLLVIDDVADV---EQLQ-NLARKRDW-FGPGSKIVITTRDKQ---------LLVAHEVDEEHIYNLEVLSNDEALQL 147 (1046)
Q Consensus 82 kr~LlVlDdv~~~---~~~~-~l~~~~~~-~~~gs~IiiTTR~~~---------~~~~~~~~~~~~~~l~~L~~~ea~~L 147 (1046)
+.-+|||||++.. .+++ .+...... ...|..||+|++... +...... ...+++++++.++-.++
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~--~~~~~l~~~~~e~~~~i 170 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQ--CIRIGLPVLDDVARAAV 170 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhc--CceEEecCCCHHHHHHH
Confidence 2348999999743 1222 22222111 134667999998532 1111111 23799999999999999
Q ss_pred HHHhhcCCCCCCchHHHHHHHHHHHhCCCchHH
Q 001603 148 FSMKAFKTRQPMGEYVELSKRVLKYAGGLPLAL 180 (1046)
Q Consensus 148 f~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 180 (1046)
+.+++....- .-.++...-|++.+.|-.-.+
T Consensus 171 L~~~a~~~~l--~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 171 LRERAQRRGL--ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHH
Confidence 9987754322 222356677788877655544
No 54
>PRK09087 hypothetical protein; Validated
Probab=98.37 E-value=1.1e-05 Score=84.08 Aligned_cols=136 Identities=13% Similarity=0.066 Sum_probs=83.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
+.|||++|+|||+|++++++... ..++. ...+...+...+ .+
T Consensus 47 l~l~G~~GsGKThLl~~~~~~~~-----~~~i~-----------~~~~~~~~~~~~----------------------~~ 88 (226)
T PRK09087 47 VVLAGPVGSGKTHLASIWREKSD-----ALLIH-----------PNEIGSDAANAA----------------------AE 88 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC-----CEEec-----------HHHcchHHHHhh----------------------hc
Confidence 78999999999999998887532 23444 111111111111 11
Q ss_pred CeEEEEEecCCCh----HHHHHHhhccCCCCCCCEEEEEeCCh---------hhHHHhcCCCcceEecCCCChHHHHHHH
Q 001603 82 KKVLLVIDDVADV----EQLQNLARKRDWFGPGSKIVITTRDK---------QLLVAHEVDEEHIYNLEVLSNDEALQLF 148 (1046)
Q Consensus 82 kr~LlVlDdv~~~----~~~~~l~~~~~~~~~gs~IiiTTR~~---------~~~~~~~~~~~~~~~l~~L~~~ea~~Lf 148 (1046)
-+|++||++.. +.+-.+..... ..|..||+|++.. .+....... .++++++++.++-.+++
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~g--l~~~l~~pd~e~~~~iL 162 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA--TVVEIGEPDDALLSQVI 162 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCC--ceeecCCCCHHHHHHHH
Confidence 27888999643 22322222221 3467899988742 222222222 38999999999999999
Q ss_pred HHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 001603 149 SMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVL 183 (1046)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 183 (1046)
.+.+-...- .-.+++..-|++++.|..-++..+
T Consensus 163 ~~~~~~~~~--~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 163 FKLFADRQL--YVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHHHcCC--CCCHHHHHHHHHHhhhhHHHHHHH
Confidence 988854322 223467778888888877776643
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.35 E-value=1.8e-06 Score=95.06 Aligned_cols=61 Identities=26% Similarity=0.579 Sum_probs=32.3
Q ss_pred CcccceeeccCccccccCcccccCCCCCEEecCCCCCCCccCCccCCCCCCCEEeccCCCCCCCcC
Q 001603 581 MKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVP 646 (1046)
Q Consensus 581 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~ 646 (1046)
+.+++.|++++|.++.+|. -.++|+.|.+++|..+..+|..+ .++|++|++++|..+..+|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 4556666666666666551 22346666666655555555433 2455555555554444333
No 56
>PLN03150 hypothetical protein; Provisional
Probab=98.33 E-value=1e-06 Score=106.32 Aligned_cols=105 Identities=28% Similarity=0.419 Sum_probs=54.1
Q ss_pred CcEEeccCCCCCCcCCccccCCcccceeeccCcccc-ccCcccccCCCCCEEecCCCCCCCccCCccCCCCCCCEEeccC
Q 001603 560 LKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIA-EVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSG 638 (1046)
Q Consensus 560 L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~ 638 (1046)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.+.+.+|..++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 344444444444444444455555555555555544 4444455555555555555555555555555555555555555
Q ss_pred CCCCCCcCcccCCC-CCCceeeccCcc
Q 001603 639 CSKLQNVPETLGQV-ESLEELDISGTA 664 (1046)
Q Consensus 639 c~~l~~~~~~~~~l-~~L~~L~Ls~n~ 664 (1046)
|...+.+|..++.. .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 55555555544432 344455555553
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.33 E-value=2.1e-08 Score=106.56 Aligned_cols=63 Identities=24% Similarity=0.318 Sum_probs=30.3
Q ss_pred CCCEEEeeCCCCCccc--cccccCCCCccEEeccCCCCCCccCCcC---CccccceeeccCCcCCccc
Q 001603 440 NLEELILEGCTRLHEI--HPSLLLHSKLVILNLKDCTSLTTLPGKI---SMKSLKTLVLSGCLKLTKK 502 (1046)
Q Consensus 440 ~L~~L~L~~~~~~~~~--~~~l~~l~~L~~L~L~~~~~l~~lp~~~---~l~~L~~L~L~~~~~l~~~ 502 (1046)
.|+.|.+.||.....- -....+++++++|++.+|..++.-.-.. .++.|+.|++..|..++..
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~ 206 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV 206 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH
Confidence 4667777776543322 1223455566666666655443321110 2455555555555444443
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.33 E-value=1.2e-06 Score=96.49 Aligned_cols=156 Identities=18% Similarity=0.268 Sum_probs=98.7
Q ss_pred cCCCCCCCEEeccCCCCCCCcCcccCCCCCCceeeccC-ccccCCCcchhhccCCceeecCCCCCCCCCCCcccCccccc
Q 001603 625 INGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISG-TAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNL 703 (1046)
Q Consensus 625 ~~~l~~L~~L~Ls~c~~l~~~~~~~~~l~~L~~L~Ls~-n~l~~~p~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 703 (1046)
+..+++++.|++++| .+..+|. -.++|+.|.+++ +.++.+|..+ .++|++|.+++|..+..
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s------------ 109 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG------------ 109 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc------------
Confidence 344688999999998 5666673 245799999987 4566667655 36899999998854321
Q ss_pred ccCcCCcccccCCCccCCCCCCEEecCCCCCCC-CCCcccccCcCCCCeeeCCCCCCc---ccchhhhhccccCeecccc
Q 001603 704 MGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGE-GAIPNDIGNLCSLKQLNLSQNNFV---TLPASINSLFNLGQLDLED 779 (1046)
Q Consensus 704 ~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~ip~~l~~l~~L~~L~Ls~n~l~---~lp~~i~~l~~L~~L~L~~ 779 (1046)
+| ++|+.|+++++.... ..+| ++|+.|.+.+++.. .+|.. --++|++|++++
T Consensus 110 ----------LP------~sLe~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~ 165 (426)
T PRK15386 110 ----------LP------ESVRSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTG 165 (426)
T ss_pred ----------cc------cccceEEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecC
Confidence 11 357888887665411 2233 36777877543311 22211 115799999999
Q ss_pred ccccccCCCCCCCCceeecCC--Ccccccccccccccccccccccc
Q 001603 780 CKRLQSMPQLPSNLYEVQVNG--CASLVTLSGALKLCKSKCTSINC 823 (1046)
Q Consensus 780 c~~l~~ip~lp~~L~~L~~~~--C~~L~~l~~~~~~~~~~~~~~~c 823 (1046)
|..+...+.+|.+|+.|.+.. |.+++.....++... .+.+.+|
T Consensus 166 c~~i~LP~~LP~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~ 210 (426)
T PRK15386 166 CSNIILPEKLPESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNS 210 (426)
T ss_pred CCcccCcccccccCcEEEecccccccccCccccccccc-Eechhhh
Confidence 987764445999999999865 344444333333322 5566666
No 59
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1e-08 Score=103.89 Aligned_cols=106 Identities=23% Similarity=0.231 Sum_probs=69.8
Q ss_pred cccceeeccCcccc--ccCcccccCCCCCEEecCCCCCCCccCCccCCCCCCCEEeccCCCCCCCcC--cccCCCCCCce
Q 001603 582 KDLMELFLDGTSIA--EVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVP--ETLGQVESLEE 657 (1046)
Q Consensus 582 ~~L~~L~L~~~~i~--~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~--~~~~~l~~L~~ 657 (1046)
+.|+.|+|+...|+ .+...+..+.+|+.|.|.++.....+...+..-.+|+.|+|+.|+...... -.+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 35778888887776 455556788888888888888877777777777888888888887665432 23456667777
Q ss_pred eeccCccccCC--Ccchhh-ccCCceeecCCCC
Q 001603 658 LDISGTAIRRP--PSSIFV-MNNLKTLSFSGCN 687 (1046)
Q Consensus 658 L~Ls~n~l~~~--p~~~~~-l~~L~~L~L~~~~ 687 (1046)
|+|+-|.+..- ...+.+ -++|+.|+|+||.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 77766655432 111111 2356666666654
No 60
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.30 E-value=3.3e-06 Score=80.39 Aligned_cols=111 Identities=22% Similarity=0.245 Sum_probs=70.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccc-----cceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHE-----FDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINII 75 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i 75 (1046)
++.|+|.+|+|||++++.+.+....+ -...+|+. +. ... ....+.+.++.++...... ..+..+..+.+
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~-~~~~~~~~i~~~l~~~~~~-~~~~~~l~~~~ 79 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN-CP---SSR-TPRDFAQEILEALGLPLKS-RQTSDELRSLL 79 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE-HH---HHS-SHHHHHHHHHHHHT-SSSS-TS-HHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE-eC---CCC-CHHHHHHHHHHHhCccccc-cCCHHHHHHHH
Confidence 47899999999999999999876543 22334444 22 222 3788899999988743332 13445555666
Q ss_pred HHhhcC-CeEEEEEecCCCh---HHHHHHhhccCCCCCCCEEEEEeCC
Q 001603 76 GSRLRQ-KKVLLVIDDVADV---EQLQNLARKRDWFGPGSKIVITTRD 119 (1046)
Q Consensus 76 ~~~L~~-kr~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IiiTTR~ 119 (1046)
.+.+.. +..+||+|+++.. +.++.+..-.. ..+.++|+..+.
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 666654 4469999999876 33444433333 566777777765
No 61
>PLN03150 hypothetical protein; Provisional
Probab=98.27 E-value=1.3e-06 Score=105.47 Aligned_cols=106 Identities=28% Similarity=0.384 Sum_probs=89.6
Q ss_pred ccceeeccCcccc-ccCcccccCCCCCEEecCCCCCCCccCCccCCCCCCCEEeccCCCCCCCcCcccCCCCCCceeecc
Q 001603 583 DLMELFLDGTSIA-EVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDIS 661 (1046)
Q Consensus 583 ~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~~~~l~~L~~L~Ls 661 (1046)
.++.|+|++|.+. .+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|...+.+|..++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778889988887 778888899999999999999888899889999999999999999888999999999999999999
Q ss_pred CccccC-CCcchhhc-cCCceeecCCCCC
Q 001603 662 GTAIRR-PPSSIFVM-NNLKTLSFSGCNG 688 (1046)
Q Consensus 662 ~n~l~~-~p~~~~~l-~~L~~L~L~~~~~ 688 (1046)
+|.+++ +|..+... .++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 998884 47776653 4677888888764
No 62
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.26 E-value=1.4e-07 Score=108.74 Aligned_cols=191 Identities=28% Similarity=0.284 Sum_probs=105.4
Q ss_pred CcCcEEeccCCCCCCcCCccccCCcccceeeccCccccccCcccccCCCCCEEecCCCCCCCccCCccCCCCCCCEEecc
Q 001603 558 QCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLS 637 (1046)
Q Consensus 558 ~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls 637 (1046)
..++.+.+..|.+.. +-..+..+++|..|++.+|.|..+...+..+++|+.|++++|.+...- .+..++.|+.|+++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLS 148 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhheec
Confidence 334444444433322 222355566677777777777666555666777777777776665442 23445567777777
Q ss_pred CCCCCCCcCcccCCCCCCceeeccCccccCCCcc-hhhccCCceeecCCCCCCCCCCCcccCcccccccCcCCcccccCC
Q 001603 638 GCSKLQNVPETLGQVESLEELDISGTAIRRPPSS-IFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLP 716 (1046)
Q Consensus 638 ~c~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~p~~-~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1046)
+|.+... ..+..+++|+.+++++|.+..+... ...+.+|+.+.+.+|.+....
T Consensus 149 ~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~------------------------ 202 (414)
T KOG0531|consen 149 GNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE------------------------ 202 (414)
T ss_pred cCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc------------------------
Confidence 7665442 2344477778888888877777543 466777777777777654421
Q ss_pred CccCCCCCCEEecCCCCCCCCCCcccccCcCC--CCeeeCCCCCCcccchhhhhccccCeeccccc
Q 001603 717 SLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCS--LKQLNLSQNNFVTLPASINSLFNLGQLDLEDC 780 (1046)
Q Consensus 717 ~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~--L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c 780 (1046)
.+..+..+..+++.+|.+.. -..+..+.. |+.+++++|.+..++..+..+..+..|++.++
T Consensus 203 ~~~~~~~l~~~~l~~n~i~~---~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 203 GLDLLKKLVLLSLLDNKISK---LEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSN 265 (414)
T ss_pred chHHHHHHHHhhccccccee---ccCcccchhHHHHHHhcccCccccccccccccccccccchhhc
Confidence 12222233333555554411 011112222 55666666666555445555555555555555
No 63
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.26 E-value=1.9e-07 Score=107.70 Aligned_cols=34 Identities=35% Similarity=0.587 Sum_probs=21.9
Q ss_pred cceeeccCccccccCcccccCCCCCEEecCCCCC
Q 001603 584 LMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSN 617 (1046)
Q Consensus 584 L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~ 617 (1046)
|+.+++.+|.+...+..+..+..+..|++.++..
T Consensus 234 L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 234 LRELYLSGNRISRSPEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred HHHHhcccCccccccccccccccccccchhhccc
Confidence 6666777777666655566666666666666544
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.25 E-value=4.7e-08 Score=104.04 Aligned_cols=135 Identities=19% Similarity=0.279 Sum_probs=71.8
Q ss_pred ccCcCcEEeccCCCCCCcCC--ccccCCcccceeeccCccc-ccc--CcccccCCCCCEEecCCCCCCCc--cCCccCCC
Q 001603 556 RLQCLKNLTLSGCSKLKKFP--ESLGSMKDLMELFLDGTSI-AEV--PSSIELLTGLQLLNLNNCSNLVR--LPSCINGL 628 (1046)
Q Consensus 556 ~l~~L~~L~L~~~~~~~~~p--~~~~~l~~L~~L~L~~~~i-~~l--p~~l~~l~~L~~L~L~~~~~~~~--l~~~~~~l 628 (1046)
.+..|+.|+.++|...+..+ .--.+..+|+.|.+.+++- +.. ..--.+.+.|+.+++..|..... +...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 34455555555554432221 1112345555555555432 111 11123556677777766654332 22233456
Q ss_pred CCCCEEeccCCCCCCCc-----CcccCCCCCCceeeccCccccCC--CcchhhccCCceeecCCCCCCC
Q 001603 629 RSLKTLNLSGCSKLQNV-----PETLGQVESLEELDISGTAIRRP--PSSIFVMNNLKTLSFSGCNGPP 690 (1046)
Q Consensus 629 ~~L~~L~Ls~c~~l~~~-----~~~~~~l~~L~~L~Ls~n~l~~~--p~~~~~l~~L~~L~L~~~~~~~ 690 (1046)
+.|+.|.+++|...... ...-..+..|+.+.|+++....- ...+..+++|+.+++.+|....
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 77777777777655432 33334566777777777765432 3445567788888888876543
No 65
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.24 E-value=3.9e-05 Score=88.30 Aligned_cols=164 Identities=16% Similarity=0.173 Sum_probs=99.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcccc--ceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEF--DGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL 79 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 79 (1046)
+.|+|..|+|||+|++++++.+.... ..++++. ..++...+...+.... .....+++.+
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~~~~~l~~~~--------~~~~~~~~~~ 204 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARKAVDILQKTH--------KEIEQFKNEI 204 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHHhh--------hHHHHHHHHh
Confidence 57999999999999999999765432 2234443 4455555555543210 1223344444
Q ss_pred cCCeEEEEEecCCCh---HH-HHHHhhccCC-CCCCCEEEEEeCChh-hHHHh------cCCCcceEecCCCChHHHHHH
Q 001603 80 RQKKVLLVIDDVADV---EQ-LQNLARKRDW-FGPGSKIVITTRDKQ-LLVAH------EVDEEHIYNLEVLSNDEALQL 147 (1046)
Q Consensus 80 ~~kr~LlVlDdv~~~---~~-~~~l~~~~~~-~~~gs~IiiTTR~~~-~~~~~------~~~~~~~~~l~~L~~~ea~~L 147 (1046)
+ +.-+|||||++.. +. .+.+..-++. ...|..||+|+.... ..... .....-++++++++.++-.++
T Consensus 205 ~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 4 3458889999643 12 2333332221 234557888865432 11111 111223788999999999999
Q ss_pred HHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHhh
Q 001603 148 FSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGS 185 (1046)
Q Consensus 148 f~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~ 185 (1046)
+.+++-.......-.+++..-|++.++|.|-.+..+..
T Consensus 284 L~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 284 IKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 99988543211123357788999999999988866553
No 66
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.23 E-value=1e-05 Score=92.90 Aligned_cols=152 Identities=24% Similarity=0.332 Sum_probs=88.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
+.|+|++|+||||+|+.+++.....|.. +... ..+ ...+ ++++..... ....+
T Consensus 39 ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a~-----~~~-~~~i-r~ii~~~~~-----------------~~~~g 91 (413)
T PRK13342 39 MILWGPPGTGKTTLARIIAGATDAPFEA---LSAV-----TSG-VKDL-REVIEEARQ-----------------RRSAG 91 (413)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE---Eecc-----ccc-HHHH-HHHHHHHHH-----------------hhhcC
Confidence 5789999999999999999876554321 1111 011 2211 122221110 01145
Q ss_pred CeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEE--eCChh--hHHHhcCCCcceEecCCCChHHHHHHHHHhhcCC
Q 001603 82 KKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVIT--TRDKQ--LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKT 155 (1046)
Q Consensus 82 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiT--TR~~~--~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 155 (1046)
++.+|+||+++.. .+.+.+..... .|..++|. |.+.. +..... .....+++.+++.++..+++.+.+...
T Consensus 92 ~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~-SR~~~~~~~~ls~e~i~~lL~~~l~~~ 167 (413)
T PRK13342 92 RRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALL-SRAQVFELKPLSEEDIEQLLKRALEDK 167 (413)
T ss_pred CceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHh-ccceeeEeCCCCHHHHHHHHHHHHHHh
Confidence 7889999999865 44555555433 35555553 33332 111111 112379999999999999998865331
Q ss_pred CCCC-chHHHHHHHHHHHhCCCchHHHHHh
Q 001603 156 RQPM-GEYVELSKRVLKYAGGLPLALTVLG 184 (1046)
Q Consensus 156 ~~~~-~~~~~~~~~i~~~~~GlPLal~~~~ 184 (1046)
.... .-..+....+++.++|.+..+..+.
T Consensus 168 ~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 168 ERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred hcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 1111 2224567789999999998765443
No 67
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.22 E-value=2.3e-05 Score=79.71 Aligned_cols=90 Identities=20% Similarity=0.273 Sum_probs=61.8
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCCh-hhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDK-QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+.+-++|+||++.. +..+.+...+....+.+.+|++|++. .+..... .....+++.+++.++..+.+.+.. -
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~-sr~~~~~~~~~~~~~~~~~l~~~g---i- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR-SRCQVLPFPPLSEEALLQWLIRQG---I- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH-hhcEEeeCCCCCHHHHHHHHHHcC---C-
Confidence 56678999999865 34566666665555667777777654 3322222 222489999999999998888761 1
Q ss_pred CCchHHHHHHHHHHHhCCCchH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLA 179 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLa 179 (1046)
..+.+..|++.++|.|..
T Consensus 170 ----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 ----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred ----CHHHHHHHHHHcCCCccc
Confidence 135688999999998853
No 68
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.21 E-value=2.3e-05 Score=81.20 Aligned_cols=154 Identities=18% Similarity=0.227 Sum_probs=88.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccc-e-eEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFD-G-STFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL 79 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~-~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 79 (1046)
+.|||..|+|||.|++++++.+....+ . ++++. ..++...+...+.. .....+++.+
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-----------~~~f~~~~~~~~~~----------~~~~~~~~~~ 95 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-----------AEEFIREFADALRD----------GEIEEFKDRL 95 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-----------HHHHHHHHHHHHHT----------TSHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccccccceeec-----------HHHHHHHHHHHHHc----------ccchhhhhhh
Confidence 579999999999999999998765433 2 34444 34444454444432 1234455666
Q ss_pred cCCeEEEEEecCCCh---HHHH-HHhhccCC-CCCCCEEEEEeCChh---------hHHHhcCCCcceEecCCCChHHHH
Q 001603 80 RQKKVLLVIDDVADV---EQLQ-NLARKRDW-FGPGSKIVITTRDKQ---------LLVAHEVDEEHIYNLEVLSNDEAL 145 (1046)
Q Consensus 80 ~~kr~LlVlDdv~~~---~~~~-~l~~~~~~-~~~gs~IiiTTR~~~---------~~~~~~~~~~~~~~l~~L~~~ea~ 145 (1046)
++ -=+|+|||++.. ..|+ ++..-++. ...|-+||+|++... +...... .-++++++++.++..
T Consensus 96 ~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~--Gl~~~l~~pd~~~r~ 172 (219)
T PF00308_consen 96 RS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSW--GLVVELQPPDDEDRR 172 (219)
T ss_dssp CT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHC--SEEEEE----HHHHH
T ss_pred hc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhh--cchhhcCCCCHHHHH
Confidence 53 347789999754 2222 22222211 135778999996432 1112222 238999999999999
Q ss_pred HHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHH
Q 001603 146 QLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALT 181 (1046)
Q Consensus 146 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 181 (1046)
+++.+.|....-. -.+++++-|++.+.+..-.|.
T Consensus 173 ~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 173 RILQKKAKERGIE--LPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHH
Confidence 9999988654432 334566667777655554443
No 69
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=4.4e-05 Score=85.98 Aligned_cols=98 Identities=13% Similarity=0.107 Sum_probs=64.9
Q ss_pred CCeEEEEEecCCChH--HHHHHhhccCCCCCCCEEEEEeCChh-hHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADVE--QLQNLARKRDWFGPGSKIVITTRDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|+|+++... .++.+...+....+..++|++|.+.. +..... .....+++++++.++..+.+...+.....
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~-SRc~~~~~~~l~~~el~~~L~~~~~~~g~ 196 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIL-SRCLQFKLKIISEEKIFNFLKYILIKESI 196 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHH-hhceEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 456689999998764 46666666655556677777776543 322221 11238999999999999888876644332
Q ss_pred CCchHHHHHHHHHHHhCCCchHHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLALT 181 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal~ 181 (1046)
.-..+.+..|++.++|.|..+.
T Consensus 197 --~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 197 --DTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred --CCCHHHHHHHHHHcCCCHHHHH
Confidence 1223567789999999886443
No 70
>PRK05642 DNA replication initiation factor; Validated
Probab=98.18 E-value=3.4e-05 Score=81.09 Aligned_cols=150 Identities=16% Similarity=0.239 Sum_probs=88.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
+.|||..|+|||+||+++++.+..+-..++|+. ..++.... ..+.+.+++
T Consensus 48 l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-----------~~~~~~~~-------------------~~~~~~~~~ 97 (234)
T PRK05642 48 IYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-----------LAELLDRG-------------------PELLDNLEQ 97 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-----------HHHHHhhh-------------------HHHHHhhhh
Confidence 579999999999999999987765434456655 22222110 112233332
Q ss_pred CeEEEEEecCCCh---HHHHH-HhhccCC-CCCCCEEEEEeCChhhHHHh-------cCCCcceEecCCCChHHHHHHHH
Q 001603 82 KKVLLVIDDVADV---EQLQN-LARKRDW-FGPGSKIVITTRDKQLLVAH-------EVDEEHIYNLEVLSNDEALQLFS 149 (1046)
Q Consensus 82 kr~LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~IiiTTR~~~~~~~~-------~~~~~~~~~l~~L~~~ea~~Lf~ 149 (1046)
-. +||+||++.. .+|++ +..-++. ...|.+||+|++...-.-.. ......++++++++.++-.+.+.
T Consensus 98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 22 6788999632 23332 3332221 23567889988754311000 01111379999999999999998
Q ss_pred HhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHh
Q 001603 150 MKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLG 184 (1046)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~ 184 (1046)
.++....- .-.+++..-|++++.|..-++..+-
T Consensus 177 ~ka~~~~~--~l~~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 177 LRASRRGL--HLTDEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 77654322 2224667778888877766554443
No 71
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.17 E-value=9.4e-07 Score=71.02 Aligned_cols=59 Identities=37% Similarity=0.558 Sum_probs=51.7
Q ss_pred CCCCEEecCCCCCCCCCCcccccCcCCCCeeeCCCCCCcccch-hhhhccccCeecccccc
Q 001603 722 HSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPA-SINSLFNLGQLDLEDCK 781 (1046)
Q Consensus 722 ~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~ 781 (1046)
|+|++|++++|++ ...-+..+.++++|+.|++++|+++.+|. .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l-~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKL-TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTE-SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCC-CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 5799999999999 33344688999999999999999998875 68999999999999996
No 72
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=5.9e-05 Score=87.71 Aligned_cols=97 Identities=9% Similarity=0.074 Sum_probs=64.8
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCCh-hhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDK-QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|||+++.. +.+..+...+....+...+|++|... .+..... .....+++.+++.++..+.+.+.+.+...
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~-SRc~~~~f~~ls~~el~~~L~~i~~~egi 193 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL-SRTQHFRFRRLTEEEIAGKLRRLLEAEGR 193 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh-cceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 45668999999865 45677776665445556666665443 3322222 22248999999999999999887754432
Q ss_pred CCchHHHHHHHHHHHhCCCchHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLAL 180 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal 180 (1046)
. ...+....|++.++|.+--+
T Consensus 194 ~--i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 194 E--AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred C--CCHHHHHHHHHHcCCCHHHH
Confidence 2 12356788999999988655
No 73
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.3e-07 Score=96.09 Aligned_cols=175 Identities=23% Similarity=0.269 Sum_probs=108.5
Q ss_pred ccceeeccCCcCCccccccccccCCCCCeEeccccccc-ccchhcccCCCCcEEecCCCCCCccc--hhhhhccCcCcEE
Q 001603 487 SLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIE-ELPLSIQHLTGLVLLNLKDCKNLKSL--SHTLRRLQCLKNL 563 (1046)
Q Consensus 487 ~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~~l--~~~l~~l~~L~~L 563 (1046)
.|+.|||+............+..+.+|+.|.+.++.+. .+...+..-.+|+.|+|+.|...... .-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 35666665543323333345566777777777777776 45666777788888888887766543 2346778888888
Q ss_pred eccCCCCCCcCCccc-c-CCcccceeeccCcccc----ccCcccccCCCCCEEecCCCCCCCc-cCCccCCCCCCCEEec
Q 001603 564 TLSGCSKLKKFPESL-G-SMKDLMELFLDGTSIA----EVPSSIELLTGLQLLNLNNCSNLVR-LPSCINGLRSLKTLNL 636 (1046)
Q Consensus 564 ~L~~~~~~~~~p~~~-~-~l~~L~~L~L~~~~i~----~lp~~l~~l~~L~~L~L~~~~~~~~-l~~~~~~l~~L~~L~L 636 (1046)
++++|......-... . --++|+.|+++|+.-. .+.--...+|+|..|||++|..+.. ....+..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 888887665432211 1 1256778888775321 2222235678888888888765543 3344566788888888
Q ss_pred cCCCCCCCcCc---ccCCCCCCceeeccCc
Q 001603 637 SGCSKLQNVPE---TLGQVESLEELDISGT 663 (1046)
Q Consensus 637 s~c~~l~~~~~---~~~~l~~L~~L~Ls~n 663 (1046)
+.|..+ +|+ .+...|+|.+|++.++
T Consensus 346 sRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 887543 232 2345566666665543
No 74
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.14 E-value=3e-05 Score=81.59 Aligned_cols=147 Identities=18% Similarity=0.225 Sum_probs=85.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
+.|+|+.|+|||+||+++++....+-..+.|+.. ...... .. .+.+.+.+
T Consensus 48 l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~-----------~~~~~~-~~------------------~~~~~~~~ 97 (235)
T PRK08084 48 IYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL-----------DKRAWF-VP------------------EVLEGMEQ 97 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH-----------HHHhhh-hH------------------HHHHHhhh
Confidence 6799999999999999999877654334455541 110000 00 01111111
Q ss_pred CeEEEEEecCCCh---HHHHHHh-hccCC-CCCC-CEEEEEeCChh---------hHHHhcCCCcceEecCCCChHHHHH
Q 001603 82 KKVLLVIDDVADV---EQLQNLA-RKRDW-FGPG-SKIVITTRDKQ---------LLVAHEVDEEHIYNLEVLSNDEALQ 146 (1046)
Q Consensus 82 kr~LlVlDdv~~~---~~~~~l~-~~~~~-~~~g-s~IiiTTR~~~---------~~~~~~~~~~~~~~l~~L~~~ea~~ 146 (1046)
.-+|+|||++.. .+|+... ..+.. ...| .++|+||+... +...+... .++++++++.++-.+
T Consensus 98 -~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g--~~~~l~~~~~~~~~~ 174 (235)
T PRK08084 98 -LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWG--QIYKLQPLSDEEKLQ 174 (235)
T ss_pred -CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCC--ceeeecCCCHHHHHH
Confidence 237899999653 3333221 11111 1133 47999997542 11222222 389999999999999
Q ss_pred HHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 001603 147 LFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVL 183 (1046)
Q Consensus 147 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 183 (1046)
++.+++.... ..-.+++..-|++++.|..-++..+
T Consensus 175 ~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 175 ALQLRARLRG--FELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHHH
Confidence 9888664432 2223466777888887766655444
No 75
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=3.4e-05 Score=92.56 Aligned_cols=101 Identities=21% Similarity=0.145 Sum_probs=67.9
Q ss_pred cCCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCChh-hHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCC
Q 001603 80 RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTR 156 (1046)
Q Consensus 80 ~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 156 (1046)
.+++-++|||+++.. +....|+..+.......++|++|.+.+ +...... ....|++++++.++..+.+.+.+-...
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlS-RCq~f~fkpLs~eEI~~~L~~il~~Eg 195 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLS-RCLQFNLKSLTQDEIGTQLNHILTQEQ 195 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHH-hheEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 367789999999865 556777766655556677776665544 3322221 223899999999999999887664322
Q ss_pred CCCchHHHHHHHHHHHhCCCchHHHHH
Q 001603 157 QPMGEYVELSKRVLKYAGGLPLALTVL 183 (1046)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~GlPLal~~~ 183 (1046)
.....+....|++.++|.|.-+..+
T Consensus 196 --I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 196 --LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred --CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1223356788999999988644433
No 76
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=0.00011 Score=85.61 Aligned_cols=99 Identities=16% Similarity=0.098 Sum_probs=66.0
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCChhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQP 158 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 158 (1046)
+++-++|||+|+.. .....+...+.....+.++|++|.+.+-...........+++++++.++..+.+.+.+.+...
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI- 195 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI- 195 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC-
Confidence 56678999999865 445566655554456677887777654322221233348999999999999988877644332
Q ss_pred CchHHHHHHHHHHHhCCCchHHH
Q 001603 159 MGEYVELSKRVLKYAGGLPLALT 181 (1046)
Q Consensus 159 ~~~~~~~~~~i~~~~~GlPLal~ 181 (1046)
....+....|+++++|.+..+.
T Consensus 196 -~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 196 -AADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred -CCCHHHHHHHHHHcCCCHHHHH
Confidence 2223567789999999875543
No 77
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=0.00019 Score=80.15 Aligned_cols=98 Identities=9% Similarity=0.054 Sum_probs=64.2
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCChhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQP 158 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 158 (1046)
+++.++|+|+++.. .....|...+.....++.+|++|.+.+............+++.+++.++..+++.......
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~--- 216 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL--- 216 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---
Confidence 56778999999864 3444555544433456777777766643322223333489999999999999998764211
Q ss_pred CchHHHHHHHHHHHhCCCchHHHHHh
Q 001603 159 MGEYVELSKRVLKYAGGLPLALTVLG 184 (1046)
Q Consensus 159 ~~~~~~~~~~i~~~~~GlPLal~~~~ 184 (1046)
. .+....+++.++|.|+....+.
T Consensus 217 --~-~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 217 --P-DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred --C-HHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1222678999999998766554
No 78
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=7.8e-07 Score=90.51 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=45.3
Q ss_pred CCCCEEecCCCCCCCCCCcccccCcCCCCeeeCCCCCCcccc--hhhhhccccCeeccccccccccCCCCCCCCceeecC
Q 001603 722 HSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLP--ASINSLFNLGQLDLEDCKRLQSMPQLPSNLYEVQVN 799 (1046)
Q Consensus 722 ~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~~l~~ip~lp~~L~~L~~~ 799 (1046)
|++..+-+..|.+.+..-......+|.+-.|+|+.|++.++. +.+..+++|..|.+++++....+.. .-=+.|-+.
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~--~err~llIa 276 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG--GERRFLLIA 276 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC--CcceEEEEe
Confidence 344444444554433333333445556666777777666443 2466777777777777776665543 111223344
Q ss_pred CCcccccccc
Q 001603 800 GCASLVTLSG 809 (1046)
Q Consensus 800 ~C~~L~~l~~ 809 (1046)
..++++-+.|
T Consensus 277 RL~~v~vLNG 286 (418)
T KOG2982|consen 277 RLTKVQVLNG 286 (418)
T ss_pred eccceEEecC
Confidence 4444544444
No 79
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.08 E-value=7.4e-08 Score=108.72 Aligned_cols=174 Identities=26% Similarity=0.295 Sum_probs=99.2
Q ss_pred cCCCCccEEEeCCccCCC--chhccccCccEEEecCC----------CCCCCCCCCCCCCceEEEcCCCCchhhcccccC
Q 001603 347 SQMTNLRLLKIDNLQLPE--GLEYLSNKLRLLDWHRY----------PLKSLPSNFQLEKTVEFNMCYSRIEELWNEIKY 414 (1046)
Q Consensus 347 ~~l~~Lr~L~l~~~~l~~--~~~~l~~~Lr~L~l~~~----------~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~ 414 (1046)
-.++.||+|.+.++.+.. ++..+-..|..|-+++. ....+...+....|...+.++|.+..+-.++.-
T Consensus 106 fpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLql 185 (1096)
T KOG1859|consen 106 FPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQL 185 (1096)
T ss_pred ccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHH
Confidence 356788888888876632 44444444555544321 112223333344566666666666666666666
Q ss_pred CCCCcEEEcCCCcCCCCCCCCCCCCCCCEEEeeCCCCCccccc-cccCCCCccEEeccCCCCCCccCCcCCccccceeec
Q 001603 415 LNMLKVMKLSHSQNLIKTPDFTGVPNLEELILEGCTRLHEIHP-SLLLHSKLVILNLKDCTSLTTLPGKISMKSLKTLVL 493 (1046)
Q Consensus 415 l~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L 493 (1046)
++.|+.|||++|++.... .+..++.|++|||+.|... .+|. +...+ +|+.|++++ +.++++-+.-++.+|+.||+
T Consensus 186 l~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrn-N~l~tL~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRN-NALTTLRGIENLKSLYGLDL 261 (1096)
T ss_pred HHHhhhhccchhhhhhhH-HHHhcccccccccccchhc-cccccchhhh-hheeeeecc-cHHHhhhhHHhhhhhhccch
Confidence 666677777766643332 5666666666666665332 2221 11222 366666666 45555555556677777777
Q ss_pred cCCcCCccccccccccCCCCCeEeccccccc
Q 001603 494 SGCLKLTKKCLEFAGSMNDLSELFLDRTTIE 524 (1046)
Q Consensus 494 ~~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~ 524 (1046)
+.|-.........+..+..|+.|+|.+|.+-
T Consensus 262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7664444445555666666667777766654
No 80
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.06 E-value=4.8e-05 Score=85.61 Aligned_cols=98 Identities=15% Similarity=0.149 Sum_probs=61.0
Q ss_pred CeEEEEEecCCChH--HHHHHhhccCCCCCCCEEEEEeCChh-hHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCCC
Q 001603 82 KKVLLVIDDVADVE--QLQNLARKRDWFGPGSKIVITTRDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQP 158 (1046)
Q Consensus 82 kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 158 (1046)
.+-+||+||++... ..+.+...+.......++|+||.... +..... .....+++.+++.++..+++...+......
T Consensus 125 ~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~-sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~ 203 (337)
T PRK12402 125 DYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIR-SRCLPLFFRAPTDDELVDVLESIAEAEGVD 203 (337)
T ss_pred CCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhc-CCceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 44589999997652 23334433333345677888775432 222222 122378999999999999988876443322
Q ss_pred CchHHHHHHHHHHHhCCCchHHHH
Q 001603 159 MGEYVELSKRVLKYAGGLPLALTV 182 (1046)
Q Consensus 159 ~~~~~~~~~~i~~~~~GlPLal~~ 182 (1046)
-..+....++++++|.+-.+..
T Consensus 204 --~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 204 --YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred --CCHHHHHHHHHHcCCCHHHHHH
Confidence 2246678889999888766544
No 81
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=0.00018 Score=83.01 Aligned_cols=102 Identities=18% Similarity=0.114 Sum_probs=62.5
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCC-hhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRD-KQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|+|+++.. ++...+...+........+|++|.+ ..+..... .....+++++++.++....+...+.....
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~-SR~~vv~f~~l~~~el~~~L~~i~~~egi 194 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTII-SRCQVIEFRNISDELIIKRLQEVAEAEGI 194 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHh-cCcEEEEECCccHHHHHHHHHHHHHHcCC
Confidence 56679999999865 3455565555433344444444444 33333322 22348999999999998888887744332
Q ss_pred CCchHHHHHHHHHHHhCCC-chHHHHHhh
Q 001603 158 PMGEYVELSKRVLKYAGGL-PLALTVLGS 185 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~Gl-PLal~~~~~ 185 (1046)
. -..+....|+++++|- +.|+..+..
T Consensus 195 ~--i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 195 E--IDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred C--CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 1 2235677788877654 566655544
No 82
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.05 E-value=9.7e-08 Score=107.82 Aligned_cols=125 Identities=28% Similarity=0.215 Sum_probs=76.6
Q ss_pred CCCEEeccCCCCCCCcCcccCCCCCCceeeccCccccCCCcchhhccCCceeecCCCCCCCCCCCcccCcccccccCcCC
Q 001603 630 SLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSY 709 (1046)
Q Consensus 630 ~L~~L~Ls~c~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~p~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1046)
.|.+.+.+.|. +..+.+.+.-++.|+.|+|++|+++... .+..++.|++|+|+.|......
T Consensus 165 ~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp----------------- 225 (1096)
T KOG1859|consen 165 KLATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVP----------------- 225 (1096)
T ss_pred hHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhcccc-----------------
Confidence 44555555433 3344455566677777888888777765 6677777788887777643320
Q ss_pred cccccCCCccCCCCCCEEecCCCCCCCCCCcccccCcCCCCeeeCCCCCCcccc--hhhhhccccCeeccccccc
Q 001603 710 PVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLP--ASINSLFNLGQLDLEDCKR 782 (1046)
Q Consensus 710 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~~ 782 (1046)
--+..++. |+.|.|+||.+.+ -..+.++.+|+.|||++|-+.... .-+..|..|+.|+|.+|+.
T Consensus 226 -----~l~~~gc~-L~~L~lrnN~l~t---L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 226 -----QLSMVGCK-LQLLNLRNNALTT---LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred -----ccchhhhh-heeeeecccHHHh---hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 00112233 7777777777621 234667777788888877655321 1356677777888887764
No 83
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.05 E-value=3e-06 Score=68.06 Aligned_cols=57 Identities=30% Similarity=0.419 Sum_probs=23.9
Q ss_pred ccceeeccCccccccCc-ccccCCCCCEEecCCCCCCCccCCccCCCCCCCEEeccCC
Q 001603 583 DLMELFLDGTSIAEVPS-SIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGC 639 (1046)
Q Consensus 583 ~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c 639 (1046)
+|+.|++++|.++.+|. .+..+++|+.|++++|.+....+..|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 34444444444444442 2344444444444444443333333344444444444333
No 84
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.05 E-value=2.3e-05 Score=88.69 Aligned_cols=145 Identities=18% Similarity=0.243 Sum_probs=81.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHh-hc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSR-LR 80 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~-L~ 80 (1046)
|.|+|++|+|||++|+++++.....|- ... ...+......+ .......+.+. -.
T Consensus 159 vLL~GppGtGKT~lakaia~~l~~~~~-----~v~---------~~~l~~~~~g~-----------~~~~i~~~f~~a~~ 213 (364)
T TIGR01242 159 VLLYGPPGTGKTLLAKAVAHETNATFI-----RVV---------GSELVRKYIGE-----------GARLVREIFELAKE 213 (364)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCEE-----ecc---------hHHHHHHhhhH-----------HHHHHHHHHHHHHh
Confidence 679999999999999999997765432 110 01111110000 00011111111 13
Q ss_pred CCeEEEEEecCCCh----------------HHHHHHhhccCCC--CCCCEEEEEeCChhhHHHh-----cCCCcceEecC
Q 001603 81 QKKVLLVIDDVADV----------------EQLQNLARKRDWF--GPGSKIVITTRDKQLLVAH-----EVDEEHIYNLE 137 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~----------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~~~~~~-----~~~~~~~~~l~ 137 (1046)
..+.+|+||++|.. ..+..+......+ ..+.+||.||......... ..+. .+++.
T Consensus 214 ~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~--~i~v~ 291 (364)
T TIGR01242 214 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDR--IIEVP 291 (364)
T ss_pred cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCce--EEEeC
Confidence 46689999999753 1133333332211 2456788888754322111 2233 79999
Q ss_pred CCChHHHHHHHHHhhcCCCCCC-chHHHHHHHHHHHhCCCc
Q 001603 138 VLSNDEALQLFSMKAFKTRQPM-GEYVELSKRVLKYAGGLP 177 (1046)
Q Consensus 138 ~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlP 177 (1046)
..+.++..++|+.++.+..... .+ ...+++.+.|..
T Consensus 292 ~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 292 LPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 9999999999998876544322 12 345667777654
No 85
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=0.00012 Score=86.20 Aligned_cols=100 Identities=15% Similarity=0.145 Sum_probs=67.5
Q ss_pred CCeEEEEEecCCChH--HHHHHhhccCCCCCCCEEEEEeCChhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCCC
Q 001603 81 QKKVLLVIDDVADVE--QLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQP 158 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 158 (1046)
++.-++|||+++... .+..|+..+.......++|+||++.+.....-......++++.++.++..+.+.+.+.....
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI- 196 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI- 196 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC-
Confidence 455688899998763 46667666555556788888888765432222222347999999999999998887644332
Q ss_pred CchHHHHHHHHHHHhCCCch-HHHH
Q 001603 159 MGEYVELSKRVLKYAGGLPL-ALTV 182 (1046)
Q Consensus 159 ~~~~~~~~~~i~~~~~GlPL-al~~ 182 (1046)
....+....|++.++|... |+..
T Consensus 197 -~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 197 -AFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred -CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2223667789999988654 5544
No 86
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.02 E-value=6.3e-06 Score=89.73 Aligned_cols=90 Identities=17% Similarity=0.157 Sum_probs=58.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcc-ccceeEEEEechhhhcccCCHHHHHHHHHHHHhhcc-Cccc----ccccchHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISH-EFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLA-DISI----WNVDDGINII 75 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~-~~~~----~~~~~~~~~i 75 (1046)
++|+|++|+||||||+++|+.+.. +|+..+|+..+++..+ . +.++++++...+.... +... .-.....+..
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~--E-VtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPE--E-VTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchh--H-HHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 589999999999999999997754 6999999987766322 2 7788888864332111 1100 0001111112
Q ss_pred HHh-hcCCeEEEEEecCCCh
Q 001603 76 GSR-LRQKKVLLVIDDVADV 94 (1046)
Q Consensus 76 ~~~-L~~kr~LlVlDdv~~~ 94 (1046)
+.. -.+++++|++|++...
T Consensus 249 e~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHcCCCEEEEEEChHHH
Confidence 222 2579999999999654
No 87
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=1.1e-06 Score=89.36 Aligned_cols=181 Identities=24% Similarity=0.240 Sum_probs=91.0
Q ss_pred CCcccceeeccCcccc---ccCcccccCCCCCEEecCCCCCCCccCCccCCCCCCCEEeccCCCCC-CCcCcccCCCCCC
Q 001603 580 SMKDLMELFLDGTSIA---EVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKL-QNVPETLGQVESL 655 (1046)
Q Consensus 580 ~l~~L~~L~L~~~~i~---~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l-~~~~~~~~~l~~L 655 (1046)
..+.+++++|.+|.|+ ++...+.++|.|+.|+|+.|+....+...-....+|++|.|.|-... ......+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4566777777777776 33344567777777777777665443222123457777777664332 1222334556677
Q ss_pred ceeeccCccccCC---Ccchhh-ccCCceeecCCCCCCCCCCC--cccCcc-cccccCcCCccc--ccCCCccCCCCCCE
Q 001603 656 EELDISGTAIRRP---PSSIFV-MNNLKTLSFSGCNGPPSSTS--WHWHFP-FNLMGQRSYPVA--LMLPSLSGLHSLSK 726 (1046)
Q Consensus 656 ~~L~Ls~n~l~~~---p~~~~~-l~~L~~L~L~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~--~~~~~l~~l~~L~~ 726 (1046)
++|+++.|.++.+ ...+.. -+.+++|.+.+|........ ....++ ........+|.. ..-.++..++++..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 7777777754433 011110 11233333333321100000 000000 000000000000 01123455667778
Q ss_pred EecCCCCCCCCCCcccccCcCCCCeeeCCCCCCc
Q 001603 727 LDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFV 760 (1046)
Q Consensus 727 L~Ls~n~l~~~~ip~~l~~l~~L~~L~Ls~n~l~ 760 (1046)
|+|+.++|.+-.--+.+..++.|..|.+++|.+.
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 8888888854444567788888888888888765
No 88
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.01 E-value=6.3e-06 Score=86.44 Aligned_cols=90 Identities=16% Similarity=0.163 Sum_probs=57.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcc-ccceeEEEEechhhhcccCCHHHHHHHHHHHHh-hccCcc----cccccchHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISH-EFDGSTFLANVREKSEKEGSVVSLQKQLLSDLL-KLADIS----IWNVDDGINII 75 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~~~~~----~~~~~~~~~~i 75 (1046)
++|+|++|+|||||++++++.+.. +|+..+|+..+.+. ...+.++++++...+. ...+.. ..-.....+..
T Consensus 19 ~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er---~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 19 GLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER---PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred EEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC---CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 689999999999999999997654 68988898865542 1237888888833332 111110 00111222222
Q ss_pred HHh-hcCCeEEEEEecCCCh
Q 001603 76 GSR-LRQKKVLLVIDDVADV 94 (1046)
Q Consensus 76 ~~~-L~~kr~LlVlDdv~~~ 94 (1046)
+.. -.++++++++|++...
T Consensus 96 ~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 96 KRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHCCCCEEEEEECHHHh
Confidence 222 2489999999998654
No 89
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.01 E-value=5.4e-05 Score=79.65 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=84.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
|.|+|..|+|||+||+++++.....-....++... ..... + ... .
T Consensus 45 ~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~-----------~~~~~----~-------------------~~~-~ 89 (227)
T PRK08903 45 FYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA-----------SPLLA----F-------------------DFD-P 89 (227)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH-----------HhHHH----H-------------------hhc-c
Confidence 68999999999999999998764332234444411 11100 0 011 2
Q ss_pred CeEEEEEecCCCh--HHHHHHhhccCC-CCCCC-EEEEEeCChhhHHHh------cCCCcceEecCCCChHHHHHHHHHh
Q 001603 82 KKVLLVIDDVADV--EQLQNLARKRDW-FGPGS-KIVITTRDKQLLVAH------EVDEEHIYNLEVLSNDEALQLFSMK 151 (1046)
Q Consensus 82 kr~LlVlDdv~~~--~~~~~l~~~~~~-~~~gs-~IiiTTR~~~~~~~~------~~~~~~~~~l~~L~~~ea~~Lf~~~ 151 (1046)
+.-+||+||++.. .+.+.+...... ...+. .||+|++........ .......+++.++++++-.+++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 2347889999754 222223222211 12344 366666643211100 1111238999999998877777665
Q ss_pred hcCCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhc
Q 001603 152 AFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSFL 187 (1046)
Q Consensus 152 a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L 187 (1046)
+-... ..-.++....+++...|++..+..+...+
T Consensus 170 ~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 43222 12223667788889999999887776544
No 90
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.00 E-value=5.8e-05 Score=75.81 Aligned_cols=152 Identities=24% Similarity=0.268 Sum_probs=81.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
+-.||++|+||||||..+++.....|. +... ...++. .++. ..+ ..++
T Consensus 53 ~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~sg--~~i~k~---~dl~----------------------~il-~~l~- 100 (233)
T PF05496_consen 53 MLFYGPPGLGKTTLARIIANELGVNFK---ITSG--PAIEKA---GDLA----------------------AIL-TNLK- 100 (233)
T ss_dssp EEEESSTTSSHHHHHHHHHHHCT--EE---EEEC--CC--SC---HHHH----------------------HHH-HT---
T ss_pred EEEECCCccchhHHHHHHHhccCCCeE---eccc--hhhhhH---HHHH----------------------HHH-HhcC-
Confidence 568999999999999999998877653 1221 011111 1111 111 1122
Q ss_pred CeEEEEEecCCCh--HHHHHHhhccCC--------CCCCC-----------EEEEEeCChhhHHHhcCCCcceEecCCCC
Q 001603 82 KKVLLVIDDVADV--EQLQNLARKRDW--------FGPGS-----------KIVITTRDKQLLVAHEVDEEHIYNLEVLS 140 (1046)
Q Consensus 82 kr~LlVlDdv~~~--~~~~~l~~~~~~--------~~~gs-----------~IiiTTR~~~~~~~~~~~~~~~~~l~~L~ 140 (1046)
++-+|.+|++... .+-+.|.+.... .++++ -|=.|||...+.....-.-..+.+++..+
T Consensus 101 ~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~ 180 (233)
T PF05496_consen 101 EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYS 180 (233)
T ss_dssp TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----T
T ss_pred CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCC
Confidence 3446777999754 222223222111 12222 23468887554433332222356899999
Q ss_pred hHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhc
Q 001603 141 NDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSFL 187 (1046)
Q Consensus 141 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L 187 (1046)
.+|-.++..+.|..-. .+-.++.+.+|++++.|-|--..-+-...
T Consensus 181 ~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 181 EEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp HHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 9999999988875443 23445788999999999997655544433
No 91
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.99 E-value=0.00011 Score=84.67 Aligned_cols=157 Identities=18% Similarity=0.165 Sum_probs=91.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccc-e-eEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFD-G-STFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL 79 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~-~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 79 (1046)
+.|||.+|+|||+||+++++.+..+.+ . +.|+. ..++..++...+... ....+++.+
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-----------~~~f~~~~~~~~~~~----------~~~~f~~~~ 191 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFLNDLVDSMKEG----------KLNEFREKY 191 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHhcc----------cHHHHHHHH
Confidence 579999999999999999998766543 2 34443 333444444443211 112334444
Q ss_pred cCCeEEEEEecCCCh---HHH-HHHhhccCC-CCCCCEEEEEeC-ChhhHHHh------cCCCcceEecCCCChHHHHHH
Q 001603 80 RQKKVLLVIDDVADV---EQL-QNLARKRDW-FGPGSKIVITTR-DKQLLVAH------EVDEEHIYNLEVLSNDEALQL 147 (1046)
Q Consensus 80 ~~kr~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~IiiTTR-~~~~~~~~------~~~~~~~~~l~~L~~~ea~~L 147 (1046)
+.+.-+||+||++.. ... +++...+.. ...|..||+||. ...-+... ......++++++.+.++-.++
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 444558999999743 111 222222111 123557888875 33221111 112223789999999999999
Q ss_pred HHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHH
Q 001603 148 FSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALT 181 (1046)
Q Consensus 148 f~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 181 (1046)
+.+.+...... -.+++...|++++.|.--.+.
T Consensus 272 L~~~~~~~~~~--l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 272 ARKMLEIEHGE--LPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHhcCCC--CCHHHHHHHHhccccCHHHHH
Confidence 99887543222 224677788888887655543
No 92
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=0.00017 Score=83.56 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=64.7
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEE-EeCChhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVI-TTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iii-TTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|+|+++.. ..+..|...+....+.+++|+ ||+.+.+...... ....+++++++.+|..+.+.+.+.....
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~S-Rc~~~ef~~ls~~el~~~L~~i~~~egi 205 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIIS-RCQRYDLRRLSFEEIFKLLEYITKQENL 205 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHh-cceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 56778999999874 457777766554455666655 4444444333222 2237999999999999999888754432
Q ss_pred CCchHHHHHHHHHHHhCCCchHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLAL 180 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal 180 (1046)
. ...+....|++.++|.+.-+
T Consensus 206 ~--ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 206 K--TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred C--CCHHHHHHHHHHcCCCHHHH
Confidence 2 22355677999999977554
No 93
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=3.5e-05 Score=87.17 Aligned_cols=98 Identities=9% Similarity=-0.019 Sum_probs=63.3
Q ss_pred cCCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCC-hhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCC
Q 001603 80 RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRD-KQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTR 156 (1046)
Q Consensus 80 ~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 156 (1046)
.++.-++|+|+++.. +.+..|+..+.........|.+|.. ..+..... .....|.+++++.++..+.+.+.+....
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~-SRCq~~~f~~ls~~~i~~~L~~i~~~Eg 197 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL-SRCQDFIFKKVPLSVLQDYSEKLCKIEN 197 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH-hhhheeeecCCCHHHHHHHHHHHHHHcC
Confidence 356678999999865 5577777666543445555545544 33333322 2223799999999999888887764332
Q ss_pred CCCchHHHHHHHHHHHhCCCchHH
Q 001603 157 QPMGEYVELSKRVLKYAGGLPLAL 180 (1046)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~GlPLal 180 (1046)
. .-..+....|++.++|.+.-.
T Consensus 198 i--~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 198 V--QYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred C--CCCHHHHHHHHHHcCChHHHH
Confidence 2 222356788999999988543
No 94
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=0.00013 Score=80.69 Aligned_cols=154 Identities=19% Similarity=0.233 Sum_probs=91.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcc------ccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISH------EFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINII 75 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~------~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i 75 (1046)
..++|+.|+||||+|+.+++.+-. +.+...|.. .. ..... +.++ +++...+...
T Consensus 29 ~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~~--~~~i~-v~~i-r~~~~~~~~~--------------- 88 (313)
T PRK05564 29 HIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-IN--KKSIG-VDDI-RNIIEEVNKK--------------- 88 (313)
T ss_pred EEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-cc--CCCCC-HHHH-HHHHHHHhcC---------------
Confidence 468999999999999999986532 223222321 00 01111 2222 2222222110
Q ss_pred HHhhcCCeEEEEEecCCC--hHHHHHHhhccCCCCCCCEEEEEeCChhhHHHhcCCCcceEecCCCChHHHHHHHHHhhc
Q 001603 76 GSRLRQKKVLLVIDDVAD--VEQLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAF 153 (1046)
Q Consensus 76 ~~~L~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 153 (1046)
-..+++-++|+|+++. ...+..+...+....+++.+|++|.+.+.+...-......+++.+++.++..+.+.+...
T Consensus 89 --p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~ 166 (313)
T PRK05564 89 --PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYN 166 (313)
T ss_pred --cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhc
Confidence 0123455666677654 456777887777667889998888766433221122224899999999999888865532
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 001603 154 KTRQPMGEYVELSKRVLKYAGGLPLALTVL 183 (1046)
Q Consensus 154 ~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 183 (1046)
+ ...+.++.++.+++|.|..+...
T Consensus 167 ~------~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 167 D------IKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred C------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 11234678899999998765544
No 95
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00017 Score=83.97 Aligned_cols=101 Identities=16% Similarity=0.151 Sum_probs=63.5
Q ss_pred cCCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCCh-hhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCC
Q 001603 80 RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDK-QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTR 156 (1046)
Q Consensus 80 ~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 156 (1046)
.+++-++|+|+++.. ...+.|...+......+++|.+|.+. .+.... ......+++++++.++..+.+.+.+-...
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI-~SRc~~~~f~~Ls~~eI~~~L~~il~~eg 195 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTI-LSRCIQLHLKHISQADIKDQLKIILAKEN 195 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhH-HHheeeEEeCCCCHHHHHHHHHHHHHHcC
Confidence 356679999999854 45666666665545566666555444 333231 22224899999999998888777553322
Q ss_pred CCCchHHHHHHHHHHHhCCCch-HHHHH
Q 001603 157 QPMGEYVELSKRVLKYAGGLPL-ALTVL 183 (1046)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~GlPL-al~~~ 183 (1046)
.....+....|++.++|.+- |+..+
T Consensus 196 --i~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 196 --INSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred --CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 12223556788999999664 44443
No 96
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00011 Score=85.46 Aligned_cols=100 Identities=12% Similarity=0.078 Sum_probs=65.3
Q ss_pred cCCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCCh-hhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCC
Q 001603 80 RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDK-QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTR 156 (1046)
Q Consensus 80 ~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 156 (1046)
.++.-++|||+++.. .....|+..+.....+.++|++|.+. .+..... .....++++.++.++..+.+.+.+....
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIr-SRCq~f~f~~ls~eei~~~L~~Il~~Eg 200 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVL-SRCLQFNLKQMPPGHIVSHLDAILGEEG 200 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHH-HHHHhcccCCCChHHHHHHHHHHHHHcC
Confidence 356678999999865 45677777666555666666555544 4433221 2223799999999999998887664332
Q ss_pred CCCchHHHHHHHHHHHhCCCchHHHH
Q 001603 157 QPMGEYVELSKRVLKYAGGLPLALTV 182 (1046)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~GlPLal~~ 182 (1046)
.. ...+..+.|++.++|.|.....
T Consensus 201 i~--~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 201 IA--HEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred CC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 21 2234567899999999965433
No 97
>PF14516 AAA_35: AAA-like domain
Probab=97.96 E-value=0.00056 Score=75.94 Aligned_cols=181 Identities=12% Similarity=0.229 Sum_probs=103.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccc-cceeEEEEechhhhc-ccCCHHHHHHHHHHHHhhccCcc-----cc-----ccc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHE-FDGSTFLANVREKSE-KEGSVVSLQKQLLSDLLKLADIS-----IW-----NVD 69 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~-~~~~~~~l~~~ll~~l~~~~~~~-----~~-----~~~ 69 (1046)
+.|.|+=.+|||||...+.+..+.+ +. ++++ +...... ...+...+.+.+...+....+.. .| ...
T Consensus 34 ~~I~apRq~GKTSll~~l~~~l~~~~~~-~v~i-d~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~ 111 (331)
T PF14516_consen 34 IRIKAPRQMGKTSLLLRLLERLQQQGYR-CVYI-DLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKI 111 (331)
T ss_pred EEEECcccCCHHHHHHHHHHHHHHCCCE-EEEE-EeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChh
Confidence 6799999999999999999877654 33 3343 3443322 23336666666666665322211 01 111
Q ss_pred chHHHHHHhh---cCCeEEEEEecCCChHH----HHHHhhcc-CCCC---------CCCEEEEEeCChhhHHHh---cCC
Q 001603 70 DGINIIGSRL---RQKKVLLVIDDVADVEQ----LQNLARKR-DWFG---------PGSKIVITTRDKQLLVAH---EVD 129 (1046)
Q Consensus 70 ~~~~~i~~~L---~~kr~LlVlDdv~~~~~----~~~l~~~~-~~~~---------~gs~IiiTTR~~~~~~~~---~~~ 129 (1046)
.....+.+.+ .+++++|+||+||..-. ..++.+.+ .|.. .-+-|++.+......... ...
T Consensus 112 ~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFN 191 (331)
T PF14516_consen 112 SCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFN 191 (331)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcc
Confidence 2233444433 26899999999986421 11111111 0111 111122222111111100 011
Q ss_pred CcceEecCCCChHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhcCCC
Q 001603 130 EEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSFLNGR 190 (1046)
Q Consensus 130 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~ 190 (1046)
-...+++++++.+|..+|...+...- ..+..++|...++|+|.-+..++..+...
T Consensus 192 Ig~~i~L~~Ft~~ev~~L~~~~~~~~------~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 192 IGQPIELPDFTPEEVQELAQRYGLEF------SQEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred cccceeCCCCCHHHHHHHHHhhhccC------CHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 12379999999999999998775321 12338899999999999999999988653
No 98
>PLN03025 replication factor C subunit; Provisional
Probab=97.95 E-value=0.00011 Score=81.41 Aligned_cols=157 Identities=14% Similarity=0.160 Sum_probs=87.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcc-ccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISH-EFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLR 80 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 80 (1046)
+.++|++|+||||+|+++++.+.. .|...+.-.+ .+...+ .. ..++.+......... .-.
T Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd~~~-~~-~vr~~i~~~~~~~~~--------------~~~ 97 (319)
T PLN03025 37 LILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASDDRG-ID-VVRNKIKMFAQKKVT--------------LPP 97 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---cccccc-HH-HHHHHHHHHHhcccc--------------CCC
Confidence 468999999999999999987633 2332211111 111111 22 122222222110000 002
Q ss_pred CCeEEEEEecCCChH--HHHHHhhccCCCCCCCEEEEEeCChh-hHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADVE--QLQNLARKRDWFGPGSKIVITTRDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
++.-++|||+++... .-..+........+.+++|++|.... +...... ....+++++++.++..+.+...+-+..-
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S-Rc~~i~f~~l~~~~l~~~L~~i~~~egi 176 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS-RCAIVRFSRLSDQEILGRLMKVVEAEKV 176 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH-hhhcccCCCCCHHHHHHHHHHHHHHcCC
Confidence 456689999998752 33344443333456678877775432 2121111 1137999999999999988887754332
Q ss_pred CCchHHHHHHHHHHHhCCCchHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLAL 180 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal 180 (1046)
.- ..+....|++.++|..-.+
T Consensus 177 ~i--~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 177 PY--VPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred CC--CHHHHHHHHHHcCCCHHHH
Confidence 21 2356778899998876444
No 99
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.93 E-value=6.1e-05 Score=73.14 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=55.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLR 80 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 80 (1046)
.|.|+|++|+||||+|+++++.+...-...+++. ..+..... ...... .. . ...........
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~~----~~~~~~--~~--------~---~~~~~~~~~~~ 82 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEGL----VVAELF--GH--------F---LVRLLFELAEK 82 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhhh----HHHHHh--hh--------h---hHhHHHHhhcc
Confidence 3789999999999999999998753323333433 22211100 000000 00 0 00011112224
Q ss_pred CCeEEEEEecCCCh-----HHHHHHhhccCCC---CCCCEEEEEeCChh
Q 001603 81 QKKVLLVIDDVADV-----EQLQNLARKRDWF---GPGSKIVITTRDKQ 121 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~-----~~~~~l~~~~~~~---~~gs~IiiTTR~~~ 121 (1046)
.++.++|+||++.. ..+..+....... ..+.+||+||....
T Consensus 83 ~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 83 AKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 56789999999863 2233333333221 36778888888654
No 100
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.93 E-value=0.00026 Score=81.39 Aligned_cols=156 Identities=18% Similarity=0.178 Sum_probs=90.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccce--eEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDG--STFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL 79 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 79 (1046)
+.|+|..|+|||+||+++++.+.++... ++|+. ..++..++...+... ....+++.+
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~----------~~~~~~~~~ 197 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-----------SEKFTNDFVNALRNN----------KMEEFKEKY 197 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-----------HHHHHHHHHHHHHcC----------CHHHHHHHH
Confidence 5799999999999999999987665432 33443 233333444443211 122334444
Q ss_pred cCCeEEEEEecCCChH---H-HHHHhhccCC-CCCCCEEEEEeCCh-hhHHHh------cCCCcceEecCCCChHHHHHH
Q 001603 80 RQKKVLLVIDDVADVE---Q-LQNLARKRDW-FGPGSKIVITTRDK-QLLVAH------EVDEEHIYNLEVLSNDEALQL 147 (1046)
Q Consensus 80 ~~kr~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~IiiTTR~~-~~~~~~------~~~~~~~~~l~~L~~~ea~~L 147 (1046)
++ .-+|||||++... . -+++...+.. ...|..||||+... ...... .......+++++.+.++-.++
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 33 3378899997531 1 1223222211 12355677777642 111111 111123689999999999999
Q ss_pred HHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHH
Q 001603 148 FSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALT 181 (1046)
Q Consensus 148 f~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 181 (1046)
+...+...... -.+++...|++.+.|..-.+.
T Consensus 277 l~~~~~~~~~~--l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 277 LQKKAEEEGLE--LPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHH
Confidence 99888554322 224677788888888776543
No 101
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.00023 Score=80.16 Aligned_cols=95 Identities=13% Similarity=0.103 Sum_probs=61.3
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCChh-hHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|+|+++.. .....|...+....++..+|++|.+.. +..... .....+.+++++.++..+.+.....
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIr-SRc~~i~f~~~~~~~i~~~L~~~~~---- 190 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIR-SRCRHVALRTPSVEAVAEVLVRRDG---- 190 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHH-hhCeEEECCCCCHHHHHHHHHHhcC----
Confidence 45557888999865 334445555444456676776666643 333322 2224899999999999988874421
Q ss_pred CCchHHHHHHHHHHHhCCCchHHHHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLALTVL 183 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal~~~ 183 (1046)
. ..+.+..++..++|.|.....+
T Consensus 191 -~--~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 191 -V--DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred -C--CHHHHHHHHHHcCCCHHHHHHH
Confidence 1 1245778999999999765444
No 102
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.90 E-value=0.00011 Score=77.23 Aligned_cols=124 Identities=21% Similarity=0.332 Sum_probs=74.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
+.+||++|+||||||+.+...-+.+- ..|+.- +.+.....+ .+.++++-.. ...+.+
T Consensus 165 mIlWGppG~GKTtlArlia~tsk~~S--yrfvel----SAt~a~t~d-vR~ife~aq~----------------~~~l~k 221 (554)
T KOG2028|consen 165 MILWGPPGTGKTTLARLIASTSKKHS--YRFVEL----SATNAKTND-VRDIFEQAQN----------------EKSLTK 221 (554)
T ss_pred eEEecCCCCchHHHHHHHHhhcCCCc--eEEEEE----eccccchHH-HHHHHHHHHH----------------HHhhhc
Confidence 56899999999999999998554431 344442 221111221 2222222211 123457
Q ss_pred CeEEEEEecCCC--hHHHHHHhhccCCCCCCCEEEE--EeCChhhHHHh-cCCCcceEecCCCChHHHHHHHHHh
Q 001603 82 KKVLLVIDDVAD--VEQLQNLARKRDWFGPGSKIVI--TTRDKQLLVAH-EVDEEHIYNLEVLSNDEALQLFSMK 151 (1046)
Q Consensus 82 kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Iii--TTR~~~~~~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~ 151 (1046)
+|.+|++|.|.. ..|-+.+++. ...|..++| ||.+...-... -...-.++-+++|+.++-..++.+-
T Consensus 222 rkTilFiDEiHRFNksQQD~fLP~---VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNKSQQDTFLPH---VENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred ceeEEEeHHhhhhhhhhhhcccce---eccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHH
Confidence 899999999964 3444444433 357777776 66666432111 1222348999999999999988873
No 103
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00023 Score=81.66 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=64.7
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCCh-hhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDK-QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|+|+++.. +....|...+....+..++|++|.+. .+..... .....+++++++.++..+.+.+.+.+...
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~-SRc~~~~f~~l~~~el~~~L~~ia~~Egi 193 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTII-SRCQRFDLQKIPTDKLVEHLVDIAKKENI 193 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHH-HhheeeecccccHHHHHHHHHHHHHHcCC
Confidence 45668999999764 44666666665555677777666443 4333222 22247999999999999999887754432
Q ss_pred CCchHHHHHHHHHHHhCCCchHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLAL 180 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal 180 (1046)
. -..+....|++.++|.+..+
T Consensus 194 ~--i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 194 E--HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred C--CCHHHHHHHHHHcCCCHHHH
Confidence 2 22356778999999987644
No 104
>PRK04195 replication factor C large subunit; Provisional
Probab=97.88 E-value=0.00023 Score=83.50 Aligned_cols=186 Identities=14% Similarity=0.187 Sum_probs=100.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
+.|+|++|+||||+|+++++.+. ++. +.+. . +.. . ......+++........ ....
T Consensus 42 lLL~GppG~GKTtla~ala~el~--~~~-ieln-a---sd~-r-~~~~i~~~i~~~~~~~s---------------l~~~ 97 (482)
T PRK04195 42 LLLYGPPGVGKTSLAHALANDYG--WEV-IELN-A---SDQ-R-TADVIERVAGEAATSGS---------------LFGA 97 (482)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC--CCE-EEEc-c---ccc-c-cHHHHHHHHHHhhccCc---------------ccCC
Confidence 67999999999999999999763 222 1221 1 111 1 11222222222211100 0113
Q ss_pred CeEEEEEecCCChH------HHHHHhhccCCCCCCCEEEEEeCChh-hHH-HhcCCCcceEecCCCChHHHHHHHHHhhc
Q 001603 82 KKVLLVIDDVADVE------QLQNLARKRDWFGPGSKIVITTRDKQ-LLV-AHEVDEEHIYNLEVLSNDEALQLFSMKAF 153 (1046)
Q Consensus 82 kr~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~IiiTTR~~~-~~~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 153 (1046)
++-+||||+++... .++.+..... ..+..||+|+.+.. ... ... .....+++.+++.++....+...+.
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lr-sr~~~I~f~~~~~~~i~~~L~~i~~ 174 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELR-NACLMIEFKRLSTRSIVPVLKRICR 174 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHh-ccceEEEecCCCHHHHHHHHHHHHH
Confidence 67799999998642 2444444333 23445666664432 111 111 1223799999999999888887765
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhcC-CC---ChHHHHHHHHHHhcCCCCchHHHHhhccc
Q 001603 154 KTRQPMGEYVELSKRVLKYAGGLPLALTVLGSFLN-GR---SVDLWRSTLKRLKKEPPNRIINILQISFD 219 (1046)
Q Consensus 154 ~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~-~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~ 219 (1046)
...... ..+....|++.++|..-.+......+. +. +.+..+... .......+++++..-+.
T Consensus 175 ~egi~i--~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~---~~d~~~~if~~l~~i~~ 239 (482)
T PRK04195 175 KEGIEC--DDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLG---RRDREESIFDALDAVFK 239 (482)
T ss_pred HcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhh---cCCCCCCHHHHHHHHHC
Confidence 433222 236678899999997766644333332 22 233322221 13344566666654443
No 105
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=9e-05 Score=87.15 Aligned_cols=99 Identities=11% Similarity=0.059 Sum_probs=62.7
Q ss_pred CCeEEEEEecCCChH--HHHHHhhccCCCCCCCEEEEEeCChh-hHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADVE--QLQNLARKRDWFGPGSKIVITTRDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|||+++... ....|+..+.......++|++|.+.+ +.... ......++++.++.++..+.+.+.+-+...
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TI-rSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi 196 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTV-LSRCLQFVLRNMTAQQVADHLAHVLDSEKI 196 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHH-HHHHhhhhcCCCCHHHHHHHHHHHHHHcCC
Confidence 566789999998653 34445554443345667777776543 22221 112236888999999999988877654332
Q ss_pred CCchHHHHHHHHHHHhCCCchHHHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLALTV 182 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal~~ 182 (1046)
. -..+....|+++++|.+.-+..
T Consensus 197 ~--id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 197 A--YEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred C--cCHHHHHHHHHHhCCCHHHHHH
Confidence 1 2235678899999998855433
No 106
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.87 E-value=0.00034 Score=80.28 Aligned_cols=152 Identities=14% Similarity=0.092 Sum_probs=85.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
+.|+|+.|+|||+||+++++.+..+-..+.++. ...+...+...+... ....++..++
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f~~~~~~~l~~~----------~~~~f~~~~~- 201 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----------SELFTEHLVSAIRSG----------EMQRFRQFYR- 201 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHHHHHHHHHHhcc----------hHHHHHHHcc-
Confidence 579999999999999999998765433345554 233333443333210 1123444443
Q ss_pred CeEEEEEecCCChH----HHHHHhhccCC-CCCCCEEEEEeCCh-h----hHHHh--cCCCcceEecCCCChHHHHHHHH
Q 001603 82 KKVLLVIDDVADVE----QLQNLARKRDW-FGPGSKIVITTRDK-Q----LLVAH--EVDEEHIYNLEVLSNDEALQLFS 149 (1046)
Q Consensus 82 kr~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IiiTTR~~-~----~~~~~--~~~~~~~~~l~~L~~~ea~~Lf~ 149 (1046)
+.-+|++||++... .-+++...++. ...|..||+||... . +.... .......+++++++.++..+++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 34478889986531 11222222111 12356788888542 1 11111 12222489999999999999999
Q ss_pred HhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 001603 150 MKAFKTRQPMGEYVELSKRVLKYAGGLP 177 (1046)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~i~~~~~GlP 177 (1046)
+++-.... .-.+++..-|++.+.|.-
T Consensus 282 ~k~~~~~~--~l~~evl~~la~~~~~di 307 (445)
T PRK12422 282 RKAEALSI--RIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHcCC--CCCHHHHHHHHHhcCCCH
Confidence 88754332 122345555666665543
No 107
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.00031 Score=77.26 Aligned_cols=96 Identities=16% Similarity=0.169 Sum_probs=61.3
Q ss_pred CeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCChhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCCCC
Q 001603 82 KKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPM 159 (1046)
Q Consensus 82 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 159 (1046)
++-++|+|+++.. +....++..+....+++.+|+||.+.......-...-..+++.+++.+++.+.+...... .
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-~--- 181 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE-S--- 181 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-C---
Confidence 3344567999864 445556555554456777777777764332222222237999999999999988765311 1
Q ss_pred chHHHHHHHHHHHhCCCchHHHHH
Q 001603 160 GEYVELSKRVLKYAGGLPLALTVL 183 (1046)
Q Consensus 160 ~~~~~~~~~i~~~~~GlPLal~~~ 183 (1046)
..+.+..++..++|.|+....+
T Consensus 182 --~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 --DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --ChHHHHHHHHHcCCCHHHHHHH
Confidence 1234567789999999866554
No 108
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.85 E-value=0.0003 Score=78.52 Aligned_cols=158 Identities=13% Similarity=0.146 Sum_probs=87.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
+.|+|..|+||||+|+.+++.+........++.. . .+...+ .. ...+.+.++..... ....
T Consensus 41 ~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~-~-~~~~~~-~~-~~~~~i~~~~~~~~---------------~~~~ 101 (319)
T PRK00440 41 LLFAGPPGTGKTTAALALARELYGEDWRENFLEL-N-ASDERG-ID-VIRNKIKEFARTAP---------------VGGA 101 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCccccceEEe-c-cccccc-hH-HHHHHHHHHHhcCC---------------CCCC
Confidence 5799999999999999999876433111112211 0 011111 11 11111111111000 0012
Q ss_pred CeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCChh-hHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCCC
Q 001603 82 KKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQP 158 (1046)
Q Consensus 82 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 158 (1046)
.+-++|+|+++.. +..+.+........+.+++|+++.... +..... .....+++++++.++....+...+......
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~-sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~ 180 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQ-SRCAVFRFSPLKKEAVAERLRYIAENEGIE 180 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHH-HHhheeeeCCCCHHHHHHHHHHHHHHcCCC
Confidence 3568999999754 234445444444455677777775432 211111 112278999999999988888877543321
Q ss_pred CchHHHHHHHHHHHhCCCchHHH
Q 001603 159 MGEYVELSKRVLKYAGGLPLALT 181 (1046)
Q Consensus 159 ~~~~~~~~~~i~~~~~GlPLal~ 181 (1046)
-..+....+++.++|.+.-+.
T Consensus 181 --i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 181 --ITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred --CCHHHHHHHHHHcCCCHHHHH
Confidence 223567788999999877643
No 109
>PRK08116 hypothetical protein; Validated
Probab=97.85 E-value=6.5e-05 Score=80.37 Aligned_cols=100 Identities=22% Similarity=0.255 Sum_probs=57.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
+.|+|..|+|||+||.++++.+..+-..++|+. ..++...+....... .......+.+.+.+
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~-------~~~~~~~~~~~l~~ 178 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSS-------GKEDENEIIRSLVN 178 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhcc-------ccccHHHHHHHhcC
Confidence 679999999999999999998876544455554 334444443332211 11122334444554
Q ss_pred CeEEEEEecCC--ChHHH--HHHhhccC-CCCCCCEEEEEeCCh
Q 001603 82 KKVLLVIDDVA--DVEQL--QNLARKRD-WFGPGSKIVITTRDK 120 (1046)
Q Consensus 82 kr~LlVlDdv~--~~~~~--~~l~~~~~-~~~~gs~IiiTTR~~ 120 (1046)
-. ||||||+. ...+| +.+...++ ....|..+||||...
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 44 89999993 22222 22222221 123566789998754
No 110
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.84 E-value=0.0002 Score=86.72 Aligned_cols=147 Identities=26% Similarity=0.321 Sum_probs=83.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh--
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL-- 79 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L-- 79 (1046)
+.|+|++|+||||+|+.+++.....|. .+..+ . .+ +.++ ++++. .+++.+
T Consensus 55 lLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~---~--~~-i~di-r~~i~------------------~a~~~l~~ 106 (725)
T PRK13341 55 LILYGPPGVGKTTLARIIANHTRAHFS---SLNAV---L--AG-VKDL-RAEVD------------------RAKERLER 106 (725)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCcce---eehhh---h--hh-hHHH-HHHHH------------------HHHHHhhh
Confidence 578999999999999999987765542 12110 0 01 1111 11111 111111
Q ss_pred cCCeEEEEEecCCC--hHHHHHHhhccCCCCCCCEEEEE--eCChh--hHHHhcCCCcceEecCCCChHHHHHHHHHhhc
Q 001603 80 RQKKVLLVIDDVAD--VEQLQNLARKRDWFGPGSKIVIT--TRDKQ--LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAF 153 (1046)
Q Consensus 80 ~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiT--TR~~~--~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 153 (1046)
.+++.+|||||++. ..+.+.+.... ..|..++|+ |.+.. +..... .....+++++++.++..+++.+.+-
T Consensus 107 ~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~-SR~~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 107 HGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALV-SRSRLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred cCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhh-ccccceecCCCCHHHHHHHHHHHHH
Confidence 24677999999975 34555665543 245656654 33332 111111 1123799999999999999887663
Q ss_pred CC-----CCCCchHHHHHHHHHHHhCCCchHH
Q 001603 154 KT-----RQPMGEYVELSKRVLKYAGGLPLAL 180 (1046)
Q Consensus 154 ~~-----~~~~~~~~~~~~~i~~~~~GlPLal 180 (1046)
.. .....-..+....|++++.|..-.+
T Consensus 183 ~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 183 DKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred HHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 10 1111223456678888888865443
No 111
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.83 E-value=0.00024 Score=82.83 Aligned_cols=156 Identities=17% Similarity=0.177 Sum_probs=92.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccce--eEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDG--STFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL 79 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 79 (1046)
+.|+|..|+|||+||+++++.+..++.. +.|+. ..++..++...+.. . ....+++.+
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~------~----~~~~~~~~~ 209 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-----------SEKFTNDFVNALRN------N----TMEEFKEKY 209 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHc------C----cHHHHHHHH
Confidence 5799999999999999999988776533 33443 23333344333321 0 123344444
Q ss_pred cCCeEEEEEecCCCh---H-HHHHHhhccCC-CCCCCEEEEEeCChh-hH----HHh--cCCCcceEecCCCChHHHHHH
Q 001603 80 RQKKVLLVIDDVADV---E-QLQNLARKRDW-FGPGSKIVITTRDKQ-LL----VAH--EVDEEHIYNLEVLSNDEALQL 147 (1046)
Q Consensus 80 ~~kr~LlVlDdv~~~---~-~~~~l~~~~~~-~~~gs~IiiTTR~~~-~~----~~~--~~~~~~~~~l~~L~~~ea~~L 147 (1046)
+ +.-+|||||++.. + ..+++...+.. ...|..|||||.... .+ ... .......+++++.+.++-.++
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 4 3448899999643 1 12233322111 123556788776532 11 111 122223799999999999999
Q ss_pred HHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHH
Q 001603 148 FSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALT 181 (1046)
Q Consensus 148 f~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 181 (1046)
+...+.... ..-.+++...|++.+.|..-.+.
T Consensus 289 l~~~~~~~~--~~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 289 LKKKAEEEG--IDLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHcC--CCCCHHHHHHHHcCcCCCHHHHH
Confidence 999885432 22234677888888888776543
No 112
>PRK06620 hypothetical protein; Validated
Probab=97.80 E-value=0.00012 Score=75.42 Aligned_cols=134 Identities=13% Similarity=0.072 Sum_probs=75.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
+.|||++|+|||+||+++++.... .++... . . .. +.. +
T Consensus 47 l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~------~--~---~~-------------------------~~~-~ 84 (214)
T PRK06620 47 LLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDI------F--F---NE-------------------------EIL-E 84 (214)
T ss_pred EEEECCCCCCHHHHHHHHHhccCC-----EEcchh------h--h---ch-------------------------hHH-h
Confidence 679999999999999987764321 222100 0 0 00 011 1
Q ss_pred CeEEEEEecCCChHHHHHHhhccCC-CCCCCEEEEEeCChhhH---HHh--cCCCcceEecCCCChHHHHHHHHHhhcCC
Q 001603 82 KKVLLVIDDVADVEQLQNLARKRDW-FGPGSKIVITTRDKQLL---VAH--EVDEEHIYNLEVLSNDEALQLFSMKAFKT 155 (1046)
Q Consensus 82 kr~LlVlDdv~~~~~~~~l~~~~~~-~~~gs~IiiTTR~~~~~---~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 155 (1046)
..-++++||++...+ +.+..-++. ...|..||+|++..... ... .....-++++++++.++-.+++.+.+...
T Consensus 85 ~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 85 KYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred cCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 234788899985432 122221110 13567899998854321 111 11112379999999999888888776432
Q ss_pred CCCCchHHHHHHHHHHHhCCCchHH
Q 001603 156 RQPMGEYVELSKRVLKYAGGLPLAL 180 (1046)
Q Consensus 156 ~~~~~~~~~~~~~i~~~~~GlPLal 180 (1046)
. ..-.+++..-|++++.|.--.+
T Consensus 164 ~--l~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 164 S--VTISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred C--CCCCHHHHHHHHHHccCCHHHH
Confidence 2 1122356667777776655444
No 113
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.00043 Score=76.86 Aligned_cols=99 Identities=15% Similarity=0.132 Sum_probs=63.2
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEE-EEEeCChhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKI-VITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~I-iiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|+|+++.. .....|...+.....+..+ ++|++...+...... ....+++.+++.++..+++.+.+....
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrS-Rc~~i~l~pl~~~~~~~~L~~~~~~~~- 217 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRS-RCQPISLKPLDDDELKKALSHLGSSQG- 217 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHh-hccEEEecCCCHHHHHHHHHHhhcccC-
Confidence 56678999999865 3344555444433345554 455454444433322 224899999999999999987432111
Q ss_pred CCchHHHHHHHHHHHhCCCchHHHHHh
Q 001603 158 PMGEYVELSKRVLKYAGGLPLALTVLG 184 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal~~~~ 184 (1046)
...+....+++.++|.|.....+.
T Consensus 218 ---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 218 ---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 113456789999999998766554
No 114
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00023 Score=84.25 Aligned_cols=101 Identities=17% Similarity=0.090 Sum_probs=65.3
Q ss_pred cCCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCChh-hHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCC
Q 001603 80 RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTR 156 (1046)
Q Consensus 80 ~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 156 (1046)
.+++-++|||+++.. +....|+..+.......++|.+|.+.+ +...... ....|++++++.++..+.+.+.+-...
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~S-RC~~~~f~~Ls~~ei~~~L~~il~~e~ 195 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS-RCLQFHLKALDVEQIRQQLEHILQAEQ 195 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHh-hheEeeCCCCCHHHHHHHHHHHHHHcC
Confidence 356778999999865 456666665554455666665555543 3322221 224899999999999998887653322
Q ss_pred CCCchHHHHHHHHHHHhCCCchHHHHH
Q 001603 157 QPMGEYVELSKRVLKYAGGLPLALTVL 183 (1046)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~GlPLal~~~ 183 (1046)
. ....+....|++.++|.+-.+..+
T Consensus 196 i--~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 196 I--PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred C--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 122355678999999988754443
No 115
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.79 E-value=0.0004 Score=82.32 Aligned_cols=215 Identities=15% Similarity=0.106 Sum_probs=104.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccc-----cc-e-eEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHE-----FD-G-STFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINI 74 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~-----f~-~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 74 (1046)
+-|+|++|+|||+.++.|.+++++. .+ . .+++ ++.... ....+...+..++............+....
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYI-NCm~Ls----tp~sIYqvI~qqL~g~~P~~GlsS~evLer 858 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEI-NGMNVV----HPNAAYQVLYKQLFNKKPPNALNSFKILDR 858 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEE-eCCccC----CHHHHHHHHHHHHcCCCCCccccHHHHHHH
Confidence 4699999999999999999876431 22 1 2233 222211 145566666666642211111122233344
Q ss_pred HHHhhc---CCeEEEEEecCCChH-----HHHHHhhccCCCCCCCEEEE--EeCChh----hHHHhcCC-CcceEecCCC
Q 001603 75 IGSRLR---QKKVLLVIDDVADVE-----QLQNLARKRDWFGPGSKIVI--TTRDKQ----LLVAHEVD-EEHIYNLEVL 139 (1046)
Q Consensus 75 i~~~L~---~kr~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~Iii--TTR~~~----~~~~~~~~-~~~~~~l~~L 139 (1046)
+.+.+. +...+||||+|+... .+-.|..... ..+++|+| +|.+.. +....... ....+..+++
T Consensus 859 LF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PY 936 (1164)
T PTZ00112 859 LFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPY 936 (1164)
T ss_pred HHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCC
Confidence 444431 234689999998642 2333333211 24556544 332211 11111110 1114677999
Q ss_pred ChHHHHHHHHHhhcCCCC-CCch-HHHHHHHHHHHhCCCchHHHHHhhhcCC-----CChHHHHHHHHHHhcCCCCchHH
Q 001603 140 SNDEALQLFSMKAFKTRQ-PMGE-YVELSKRVLKYAGGLPLALTVLGSFLNG-----RSVDLWRSTLKRLKKEPPNRIIN 212 (1046)
Q Consensus 140 ~~~ea~~Lf~~~a~~~~~-~~~~-~~~~~~~i~~~~~GlPLal~~~~~~L~~-----~~~~~w~~~l~~l~~~~~~~i~~ 212 (1046)
+.+|-.+++..++..... ..++ .+-+|+.++...|..-.||.++-..... -..+..+.+..++...+ +.+
T Consensus 937 TaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegskVT~eHVrkAleeiE~sr---I~e 1013 (1164)
T PTZ00112 937 KGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKIVPRDITEATNQLFDSP---LTN 1013 (1164)
T ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHHHhhh---HHH
Confidence 999999999998753211 1222 2223333333334455555554433321 13344444444442221 222
Q ss_pred HHhhcccccchhhhhhhc
Q 001603 213 ILQISFDGLQDLEKKIFL 230 (1046)
Q Consensus 213 ~l~~sy~~L~~~~k~~fl 230 (1046)
....||.+.|-.++
T Consensus 1014 ----~IktLPlHqKLVLl 1027 (1164)
T PTZ00112 1014 ----AINYLPWPFKMFLT 1027 (1164)
T ss_pred ----HHHcCCHHHHHHHH
Confidence 23567777665444
No 116
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00027 Score=83.89 Aligned_cols=96 Identities=11% Similarity=0.122 Sum_probs=59.7
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCC-hhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRD-KQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|+|+++.. .....|...+....+.+.+|++|.. ..+..... .....+++++++.++....+.+.+.....
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~-SRc~~vef~~l~~~ei~~~L~~i~~~egi 204 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIA-SRCQRFNFKRIPLDEIQSQLQMICRAEGI 204 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHH-hhceEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 44557899999865 3456666655544455665555543 33333322 22238999999999988888776543221
Q ss_pred CCchHHHHHHHHHHHhCCCchH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLA 179 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLa 179 (1046)
.-..+.+..+++.++|..--
T Consensus 205 --~I~~eal~~La~~s~Gdlr~ 224 (620)
T PRK14954 205 --QIDADALQLIARKAQGSMRD 224 (620)
T ss_pred --CCCHHHHHHHHHHhCCCHHH
Confidence 12235678899999996653
No 117
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.78 E-value=0.00052 Score=77.84 Aligned_cols=101 Identities=11% Similarity=0.069 Sum_probs=65.8
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCChh-hHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|+|+++.. .....+...+....+.+.+|++|.+.. +..... .....+++.+++.++..+++...+-....
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~-sr~~~~~~~~~~~~~l~~~l~~~~~~~g~ 194 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATIL-SRCQRFDFKRIPLEDIVERLKKILDKEGI 194 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHH-hheeEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 45558889999765 445666665554455677777775554 222222 11237899999999999888887644332
Q ss_pred CCchHHHHHHHHHHHhCCCchHHHHHh
Q 001603 158 PMGEYVELSKRVLKYAGGLPLALTVLG 184 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal~~~~ 184 (1046)
.. ..+.+..+++.++|.|..+....
T Consensus 195 ~i--~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 195 KI--EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CC--CHHHHHHHHHHcCCChHHHHHHH
Confidence 21 23667888999999997665544
No 118
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00043 Score=81.81 Aligned_cols=99 Identities=14% Similarity=0.141 Sum_probs=64.0
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCC-hhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRD-KQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
++.-++|||+|+.. +....|...+.......++|++|.+ ..+.... ......++++.++.++..+.+.+.+.+...
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TI-lSRc~~~~f~~Ls~eei~~~L~~i~~~egi 201 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTV-LSRCLQFNLRPMAPETVLEHLTQVLAAENV 201 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHH-HHhceeeecCCCCHHHHHHHHHHHHHHcCC
Confidence 45568899999865 4566666665544456666655544 3333332 222248999999999999888877644332
Q ss_pred CCchHHHHHHHHHHHhCCCchHHHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLALTV 182 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal~~ 182 (1046)
. ...+....|++.++|.+.-+..
T Consensus 202 ~--ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 202 P--AEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred C--CCHHHHHHHHHHcCCCHHHHHH
Confidence 2 2235677889999997755543
No 119
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00037 Score=81.42 Aligned_cols=98 Identities=13% Similarity=0.051 Sum_probs=61.5
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCChh-hHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
++.-++|+|+|+.. +....+...+....+..++|++|.+.+ +.... ......+++++++.++..+.+.+.+-....
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI-~SRc~~~~f~~l~~~~i~~~l~~il~~egi 196 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTV-LSRCLQFHLAQLPPLQIAAHCQHLLKEENV 196 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHH-HHHhhhhhcCCCCHHHHHHHHHHHHHHcCC
Confidence 45668899999864 456666665555556777776665543 32221 112237899999999887776666543322
Q ss_pred CCchHHHHHHHHHHHhCCCchHHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLALT 181 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal~ 181 (1046)
. -..+....|++.++|.+.-+.
T Consensus 197 ~--~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 197 E--FENAALDLLARAANGSVRDAL 218 (509)
T ss_pred C--CCHHHHHHHHHHcCCcHHHHH
Confidence 2 123456788999999886543
No 120
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.76 E-value=3.8e-05 Score=84.31 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=59.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccc-cceeEEEEechhhhcccCCHHHHHHHHHHHHhhc-cCcccccc----cchHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHE-FDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKL-ADISIWNV----DDGINII 75 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~-~~~~~~~~----~~~~~~i 75 (1046)
++|+|++|+|||||++.+++.+... |+..+|+..+++- ...+.+++++++..+... .+...... ....+..
T Consensus 171 ~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER---~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 171 GLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred EEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC---CccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 7899999999999999999987665 9989998866442 223888888886554311 11110000 1111112
Q ss_pred HHh-hcCCeEEEEEecCCCh
Q 001603 76 GSR-LRQKKVLLVIDDVADV 94 (1046)
Q Consensus 76 ~~~-L~~kr~LlVlDdv~~~ 94 (1046)
+.. -++++++|++|++...
T Consensus 248 e~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 248 KRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHcCCCeEEEEEChhHH
Confidence 222 2589999999999754
No 121
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.75 E-value=0.0006 Score=79.59 Aligned_cols=155 Identities=14% Similarity=0.175 Sum_probs=89.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccc--eeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFD--GSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL 79 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 79 (1046)
+.|||..|+|||.|++++++.+...+. .+.|+. ..++..++...+... ....+++.+
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-----------aeef~~el~~al~~~----------~~~~f~~~y 375 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-----------SEEFTNEFINSIRDG----------KGDSFRRRY 375 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHHHHHHHHhc----------cHHHHHHHh
Confidence 679999999999999999998765432 234444 334444444433210 122344444
Q ss_pred cCCeEEEEEecCCCh---HHH-HHHhhccCC-CCCCCEEEEEeCChh-----hHHHh--cCCCcceEecCCCChHHHHHH
Q 001603 80 RQKKVLLVIDDVADV---EQL-QNLARKRDW-FGPGSKIVITTRDKQ-----LLVAH--EVDEEHIYNLEVLSNDEALQL 147 (1046)
Q Consensus 80 ~~kr~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~IiiTTR~~~-----~~~~~--~~~~~~~~~l~~L~~~ea~~L 147 (1046)
++ -=+|||||++.. +.+ +++...++. ...|..|||||+..- +...+ .....-+++++..+.+.-.++
T Consensus 376 ~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 376 RE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred hc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 43 347888999643 222 222222211 134567888887531 11111 122234899999999999999
Q ss_pred HHHhhcCCCCCCchHHHHHHHHHHHhCCCchHH
Q 001603 148 FSMKAFKTRQPMGEYVELSKRVLKYAGGLPLAL 180 (1046)
Q Consensus 148 f~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 180 (1046)
+.+++....-. -.+++..-|++++.+..-.|
T Consensus 455 L~kka~~r~l~--l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 455 LRKKAVQEQLN--APPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHHhcCCC--CCHHHHHHHHHhccCCHHHH
Confidence 99887544322 22356666666666554433
No 122
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00063 Score=79.88 Aligned_cols=103 Identities=13% Similarity=0.126 Sum_probs=66.1
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCCh-hhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDK-QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-+||||+++.. +....|...+........+|++|.+. .+..... .....+++++++.++..+.+...+.....
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~-SRcq~i~F~pLs~~eL~~~L~~il~~egi 196 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIV-SRCQHFTFTRLSEAGLEAHLTKVLGREGV 196 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHH-hhhhccccCCCCHHHHHHHHHHHHHHcCC
Confidence 56678999999865 44566666554334556666666554 3332221 11237899999999999888876654332
Q ss_pred CCchHHHHHHHHHHHhCCCc-hHHHHHhhh
Q 001603 158 PMGEYVELSKRVLKYAGGLP-LALTVLGSF 186 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlP-Lal~~~~~~ 186 (1046)
.-..+.+..|++.++|.+ .|+..+...
T Consensus 197 --~id~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 197 --DYDPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred --CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 122356788999999965 577666543
No 123
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.73 E-value=0.00035 Score=79.40 Aligned_cols=145 Identities=18% Similarity=0.244 Sum_probs=78.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHh-hc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSR-LR 80 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~-L~ 80 (1046)
|.++|++|+|||++|+++++..... |+... ..++..... .........+.+. -.
T Consensus 168 vLL~GppGtGKT~lAkaia~~~~~~-----~i~v~---------~~~l~~~~~-----------g~~~~~i~~~f~~a~~ 222 (389)
T PRK03992 168 VLLYGPPGTGKTLLAKAVAHETNAT-----FIRVV---------GSELVQKFI-----------GEGARLVRELFELARE 222 (389)
T ss_pred eEEECCCCCChHHHHHHHHHHhCCC-----EEEee---------hHHHhHhhc-----------cchHHHHHHHHHHHHh
Confidence 6789999999999999999976543 22210 111111000 0000111111111 13
Q ss_pred CCeEEEEEecCCCh-------------HH---HHHHhhccCCC--CCCCEEEEEeCChhhHHHh-----cCCCcceEecC
Q 001603 81 QKKVLLVIDDVADV-------------EQ---LQNLARKRDWF--GPGSKIVITTRDKQLLVAH-----EVDEEHIYNLE 137 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~-------------~~---~~~l~~~~~~~--~~gs~IiiTTR~~~~~~~~-----~~~~~~~~~l~ 137 (1046)
..+.+|+|||+|.. +. +..+......+ ..+.+||.||......... ..+ ..++++
T Consensus 223 ~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd--~~I~v~ 300 (389)
T PRK03992 223 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFD--RIIEVP 300 (389)
T ss_pred cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCc--eEEEEC
Confidence 46689999999863 11 22233222211 2345677777654322211 223 379999
Q ss_pred CCChHHHHHHHHHhhcCCCCCC-chHHHHHHHHHHHhCCCc
Q 001603 138 VLSNDEALQLFSMKAFKTRQPM-GEYVELSKRVLKYAGGLP 177 (1046)
Q Consensus 138 ~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlP 177 (1046)
..+.++..++|+.++.+..... .+ ...+++.+.|.-
T Consensus 301 ~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 301 LPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred CCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 9999999999998875443221 22 344555665543
No 124
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.0011 Score=73.97 Aligned_cols=175 Identities=16% Similarity=0.181 Sum_probs=106.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcccccee-EEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGS-TFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLR 80 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 80 (1046)
+.|+|..|+|||+.++.++++++...... +...|++... +.-++..+++.++.+.+... +...+....+.+.+.
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~----t~~~i~~~i~~~~~~~p~~g-~~~~~~~~~l~~~~~ 119 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELR----TPYQVLSKILNKLGKVPLTG-DSSLEILKRLYDNLS 119 (366)
T ss_pred EEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCC----CHHHHHHHHHHHcCCCCCCC-CchHHHHHHHHHHHH
Confidence 57999999999999999999887764443 3333444332 36678888888886333321 344455666666664
Q ss_pred --CCeEEEEEecCCCh-----HHHHHHhhccCCCCCCCEE--EEEeCChhhHHHhc-----CCCcceEecCCCChHHHHH
Q 001603 81 --QKKVLLVIDDVADV-----EQLQNLARKRDWFGPGSKI--VITTRDKQLLVAHE-----VDEEHIYNLEVLSNDEALQ 146 (1046)
Q Consensus 81 --~kr~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~I--iiTTR~~~~~~~~~-----~~~~~~~~l~~L~~~ea~~ 146 (1046)
++.+++|||+++.. +.+-.|....... .++| |..+-+........ .-....+..++-+.+|-.+
T Consensus 120 ~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~ 197 (366)
T COG1474 120 KKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYD 197 (366)
T ss_pred hcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHH
Confidence 68999999999864 2344555443323 4544 33444433322211 1111247788999999999
Q ss_pred HHHHhhc---CCCCCCchHHHHHHHHHHHhCC-CchHHHHH
Q 001603 147 LFSMKAF---KTRQPMGEYVELSKRVLKYAGG-LPLALTVL 183 (1046)
Q Consensus 147 Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~G-lPLal~~~ 183 (1046)
.+..++- ......++.-+++..++.+.+| .-.|+.++
T Consensus 198 Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 198 ILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred HHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 8888763 3333344555555566666664 33444443
No 125
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.71 E-value=0.00022 Score=67.79 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
|.|+|+.|+||||+|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 67999999999999999999874
No 126
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.71 E-value=0.00027 Score=75.95 Aligned_cols=130 Identities=13% Similarity=0.097 Sum_probs=68.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcccc--ceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEF--DGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL 79 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 79 (1046)
|.++|++|+||||+|+.+++.+...- ....++.. . ..++..... . +....+++.+
T Consensus 45 vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~-~--------~~~l~~~~~-----------g---~~~~~~~~~~ 101 (261)
T TIGR02881 45 MIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEV-E--------RADLVGEYI-----------G---HTAQKTREVI 101 (261)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEe-c--------HHHhhhhhc-----------c---chHHHHHHHH
Confidence 57899999999999999998653210 11122221 0 111111100 0 0011112222
Q ss_pred c-CCeEEEEEecCCC----------hHHHHHHhhccCCCCCCCEEEEEeCChhhHH------HhcCCCcceEecCCCChH
Q 001603 80 R-QKKVLLVIDDVAD----------VEQLQNLARKRDWFGPGSKIVITTRDKQLLV------AHEVDEEHIYNLEVLSND 142 (1046)
Q Consensus 80 ~-~kr~LlVlDdv~~----------~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~------~~~~~~~~~~~l~~L~~~ 142 (1046)
+ ...-+|++|+++. .++++.+............+|+++....... .....-...+++++++.+
T Consensus 102 ~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~ 181 (261)
T TIGR02881 102 KKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVE 181 (261)
T ss_pred HhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHH
Confidence 1 1123889999975 2345566655443333335555554433211 111111236899999999
Q ss_pred HHHHHHHHhhcC
Q 001603 143 EALQLFSMKAFK 154 (1046)
Q Consensus 143 ea~~Lf~~~a~~ 154 (1046)
|-.+++.+.+..
T Consensus 182 el~~Il~~~~~~ 193 (261)
T TIGR02881 182 ELMEIAERMVKE 193 (261)
T ss_pred HHHHHHHHHHHH
Confidence 999999877744
No 127
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00017 Score=82.38 Aligned_cols=98 Identities=10% Similarity=0.077 Sum_probs=62.7
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeC-ChhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTR-DKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR-~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|+|+++.. +.++.+...+....+.+.+|++|. ...+..... .....+++++++.++..+.+...+-...
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~-sR~~~v~f~~l~~~ei~~~l~~~~~~~g- 203 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIA-SRCQRFNFKRIPLEEIQQQLQGICEAEG- 203 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHH-HHHHHhhcCCCCHHHHHHHHHHHHHHcC-
Confidence 45668899999864 456666666554556677665554 333333221 1113799999999999888877663322
Q ss_pred CCchHHHHHHHHHHHhCCCchHHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLALT 181 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal~ 181 (1046)
..-..+.+..+++.++|.+--+.
T Consensus 204 -~~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 204 -ISVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred -CCCCHHHHHHHHHHcCCCHHHHH
Confidence 11223667889999999886443
No 128
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.00038 Score=81.89 Aligned_cols=97 Identities=12% Similarity=0.076 Sum_probs=61.5
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCChh-hHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|+|+++.. +....+...+........+|.+|.+.+ +.... ......+++++++.++..+.+.+.+.....
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI-~SRc~~~~f~~l~~~~i~~~L~~il~~egi 196 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTV-LSRCLQFNLKQMPPPLIVSHLQHILEQENI 196 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhH-HHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 56678999999865 345566665554455666666665443 22221 111237999999999998888776543321
Q ss_pred CCchHHHHHHHHHHHhCCCchHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLAL 180 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal 180 (1046)
....+....|++.++|.+--+
T Consensus 197 --~~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 197 --PFDATALQLLARAAAGSMRDA 217 (527)
T ss_pred --CCCHHHHHHHHHHcCCCHHHH
Confidence 122355678899999987533
No 129
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.0014 Score=77.29 Aligned_cols=100 Identities=16% Similarity=0.199 Sum_probs=63.4
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCC-hhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRD-KQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|+|+++.. +....|+..+........+|++|.+ ..+....... ...|+++.++.++..+.+.+.+.....
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SR-c~~~~F~~l~~~~i~~~L~~i~~~egi 195 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR-THHYPFRLLPPRTMRALIARICEQEGV 195 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHh-ceEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 45668899999854 4566666666555556666655544 4443332221 238999999999998888776644332
Q ss_pred CCchHHHHHHHHHHHhCCCch-HHHHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPL-ALTVL 183 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPL-al~~~ 183 (1046)
. -..+....|+++++|.+- |+..+
T Consensus 196 ~--i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 196 V--VDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred C--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 123456778999999875 44443
No 130
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.0009 Score=76.03 Aligned_cols=154 Identities=16% Similarity=0.175 Sum_probs=85.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccc--------cceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHE--------FDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGIN 73 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~ 73 (1046)
+.++|+.|+||||+|+.+.+.+... |...++-.+ . ....+ +.+ .+++..++...
T Consensus 42 ~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~--~-~~~~~-~~~-i~~l~~~~~~~------------- 103 (367)
T PRK14970 42 LLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD--A-ASNNS-VDD-IRNLIDQVRIP------------- 103 (367)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec--c-ccCCC-HHH-HHHHHHHHhhc-------------
Confidence 5689999999999999998876431 222222110 0 00011 111 11222221100
Q ss_pred HHHHhhcCCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCCh-hhHHHhcCCCcceEecCCCChHHHHHHHHH
Q 001603 74 IIGSRLRQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDK-QLLVAHEVDEEHIYNLEVLSNDEALQLFSM 150 (1046)
Q Consensus 74 ~i~~~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 150 (1046)
-..+++-++|+|+++.. ..+..+...+........+|++|..+ .+..... .....+++++++.++..+.+..
T Consensus 104 ----p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~-sr~~~v~~~~~~~~~l~~~l~~ 178 (367)
T PRK14970 104 ----PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL-SRCQIFDFKRITIKDIKEHLAG 178 (367)
T ss_pred ----cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHH-hcceeEecCCccHHHHHHHHHH
Confidence 01234557999999754 34556655443333455666555433 3322222 1123799999999999988888
Q ss_pred hhcCCCCCCchHHHHHHHHHHHhCCCchHH
Q 001603 151 KAFKTRQPMGEYVELSKRVLKYAGGLPLAL 180 (1046)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 180 (1046)
.+...... -..+.+..++++++|.+-.+
T Consensus 179 ~~~~~g~~--i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 179 IAVKEGIK--FEDDALHIIAQKADGALRDA 206 (367)
T ss_pred HHHHcCCC--CCHHHHHHHHHhCCCCHHHH
Confidence 77543321 22366778888899876644
No 131
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.61 E-value=0.00086 Score=78.29 Aligned_cols=94 Identities=15% Similarity=0.118 Sum_probs=58.0
Q ss_pred eEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCCh-hhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCCCC
Q 001603 83 KVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDK-QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPM 159 (1046)
Q Consensus 83 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 159 (1046)
+-++|+|+++.. .....|...+....+...+|++|... .+..... .....+++.+++.++....+...+......
T Consensus 120 ~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~-SRcq~ieF~~Ls~~eL~~~L~~il~kegi~- 197 (605)
T PRK05896 120 YKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTII-SRCQRYNFKKLNNSELQELLKSIAKKEKIK- 197 (605)
T ss_pred cEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHH-hhhhhcccCCCCHHHHHHHHHHHHHHcCCC-
Confidence 346999999864 44555655544334556665555443 3332222 122379999999999998888766433211
Q ss_pred chHHHHHHHHHHHhCCCchH
Q 001603 160 GEYVELSKRVLKYAGGLPLA 179 (1046)
Q Consensus 160 ~~~~~~~~~i~~~~~GlPLa 179 (1046)
-..+.+..+++.++|.+..
T Consensus 198 -Is~eal~~La~lS~GdlR~ 216 (605)
T PRK05896 198 -IEDNAIDKIADLADGSLRD 216 (605)
T ss_pred -CCHHHHHHHHHHcCCcHHH
Confidence 1235577889999996653
No 132
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.61 E-value=0.00029 Score=80.00 Aligned_cols=130 Identities=17% Similarity=0.193 Sum_probs=71.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
|.++|++|+|||++|+++++.....|- .+.. + ++..... + .........+......
T Consensus 220 VLL~GPPGTGKT~LAraIA~el~~~fi---~V~~----s-------eL~~k~~---G-------e~~~~vr~lF~~A~~~ 275 (438)
T PTZ00361 220 VILYGPPGTGKTLLAKAVANETSATFL---RVVG----S-------ELIQKYL---G-------DGPKLVRELFRVAEEN 275 (438)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCEE---EEec----c-------hhhhhhc---c-------hHHHHHHHHHHHHHhC
Confidence 678999999999999999998765541 1110 0 0110000 0 0000011111222235
Q ss_pred CeEEEEEecCCChH----------------HHHHHhhccCCC--CCCCEEEEEeCChhhHHHhcC---CCcceEecCCCC
Q 001603 82 KKVLLVIDDVADVE----------------QLQNLARKRDWF--GPGSKIVITTRDKQLLVAHEV---DEEHIYNLEVLS 140 (1046)
Q Consensus 82 kr~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~IiiTTR~~~~~~~~~~---~~~~~~~l~~L~ 140 (1046)
.+.+|+||++|... .+..++..+..+ ..+.+||+||.....+...-. .-...+++...+
T Consensus 276 ~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd 355 (438)
T PTZ00361 276 APSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPD 355 (438)
T ss_pred CCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCC
Confidence 67888999975321 122232222211 235678888876554433211 112479999999
Q ss_pred hHHHHHHHHHhhcCC
Q 001603 141 NDEALQLFSMKAFKT 155 (1046)
Q Consensus 141 ~~ea~~Lf~~~a~~~ 155 (1046)
.++..++|..++.+.
T Consensus 356 ~~~R~~Il~~~~~k~ 370 (438)
T PTZ00361 356 EKTKRRIFEIHTSKM 370 (438)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999886443
No 133
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.59 E-value=0.00084 Score=72.67 Aligned_cols=131 Identities=15% Similarity=0.144 Sum_probs=70.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccc--cceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHE--FDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL 79 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 79 (1046)
|.++|++|+||||+|+.+++.+... .....|+... ..++ ...+... ........+.+ .
T Consensus 61 vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~---------~~~l----~~~~~g~------~~~~~~~~~~~-a 120 (284)
T TIGR02880 61 MSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT---------RDDL----VGQYIGH------TAPKTKEILKR-A 120 (284)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec---------HHHH----hHhhccc------chHHHHHHHHH-c
Confidence 5799999999999999988865432 1111233311 1111 1111110 00111112222 1
Q ss_pred cCCeEEEEEecCCCh-----------HHHHHHhhccCCCCCCCEEEEEeCChhhHHHhcCC------CcceEecCCCChH
Q 001603 80 RQKKVLLVIDDVADV-----------EQLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVD------EEHIYNLEVLSND 142 (1046)
Q Consensus 80 ~~kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~------~~~~~~l~~L~~~ 142 (1046)
..-+|+||+++.. +..+.+.........+.+||+++...........+ -...+++++++.+
T Consensus 121 --~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~e 198 (284)
T TIGR02880 121 --MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEA 198 (284)
T ss_pred --cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHH
Confidence 2358889999732 22444555444344556677766543322211111 1237999999999
Q ss_pred HHHHHHHHhhcC
Q 001603 143 EALQLFSMKAFK 154 (1046)
Q Consensus 143 ea~~Lf~~~a~~ 154 (1046)
|-.+++...+-.
T Consensus 199 dl~~I~~~~l~~ 210 (284)
T TIGR02880 199 ELLVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHHHH
Confidence 999998887643
No 134
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.59 E-value=0.0011 Score=71.79 Aligned_cols=150 Identities=23% Similarity=0.323 Sum_probs=79.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhh-hcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREK-SEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL 79 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 79 (1046)
.++|||+.|+|||.+|++++++....| +.....+. +.-.+.-...+++++..... ..+ -
T Consensus 150 gllL~GPPGcGKTllAraiA~elg~~~----i~vsa~eL~sk~vGEsEk~IR~~F~~A~~--------------~a~--~ 209 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFKKMGIEP----IVMSAGELESENAGEPGKLIRQRYREAAD--------------IIK--K 209 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHcCCCe----EEEEHHHhhcCcCCcHHHHHHHHHHHHHH--------------Hhh--c
Confidence 379999999999999999999876543 22222222 12222233333333332210 000 1
Q ss_pred cCCeEEEEEecCCCh------------HHH--HHHhhcc----------CC----CCCCCEEEEEeCChhhHHHh-----
Q 001603 80 RQKKVLLVIDDVADV------------EQL--QNLARKR----------DW----FGPGSKIVITTRDKQLLVAH----- 126 (1046)
Q Consensus 80 ~~kr~LlVlDdv~~~------------~~~--~~l~~~~----------~~----~~~gs~IiiTTR~~~~~~~~----- 126 (1046)
++++++|+||++|.. .++ ..|+... .| ..++..||+||.+...+...
T Consensus 210 ~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpG 289 (413)
T PLN00020 210 KGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDG 289 (413)
T ss_pred cCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCC
Confidence 468999999999731 111 1232211 01 23456778888766543221
Q ss_pred cCCCcceEecCCCChHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 001603 127 EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPL 178 (1046)
Q Consensus 127 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 178 (1046)
.++. .| ..-+.++-.++++.+.-+..-+ ..-..++++...|=|+
T Consensus 290 RfDk--~i--~lPd~e~R~eIL~~~~r~~~l~----~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 290 RMEK--FY--WAPTREDRIGVVHGIFRDDGVS----REDVVKLVDTFPGQPL 333 (413)
T ss_pred CCCc--ee--CCCCHHHHHHHHHHHhccCCCC----HHHHHHHHHcCCCCCc
Confidence 1222 33 3456677777777655333222 1334556666666654
No 135
>PRK12377 putative replication protein; Provisional
Probab=97.56 E-value=0.00033 Score=73.44 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=27.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
+.|+|..|+|||+||.++++.+..+...+.|+.
T Consensus 104 l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 104 FVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 679999999999999999998876655566665
No 136
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.56 E-value=0.00066 Score=78.29 Aligned_cols=131 Identities=16% Similarity=0.240 Sum_probs=71.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcccc-----ceeEEEEechhhh--cc-cCCHHHHHHHHHHHHhhccCcccccccchHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEF-----DGSTFLANVREKS--EK-EGSVVSLQKQLLSDLLKLADISIWNVDDGIN 73 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f-----~~~~~~~~~~~~~--~~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~ 73 (1046)
|.++|++|+|||++|+++++.+...+ ....|+. +.... .+ .+......+. ...
T Consensus 219 ILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~~~eLl~kyvGete~~ir~------------------iF~ 279 (512)
T TIGR03689 219 VLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IKGPELLNKYVGETERQIRL------------------IFQ 279 (512)
T ss_pred eEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-ccchhhcccccchHHHHHHH------------------HHH
Confidence 67999999999999999999876542 2233443 21100 00 0000000111 111
Q ss_pred HHHHh-hcCCeEEEEEecCCChH---------H-----HHHHhhccCCCC--CCCEEEEEeCChhhHHH-h----cCCCc
Q 001603 74 IIGSR-LRQKKVLLVIDDVADVE---------Q-----LQNLARKRDWFG--PGSKIVITTRDKQLLVA-H----EVDEE 131 (1046)
Q Consensus 74 ~i~~~-L~~kr~LlVlDdv~~~~---------~-----~~~l~~~~~~~~--~gs~IiiTTR~~~~~~~-~----~~~~~ 131 (1046)
..++. -.+++++|+||++|..- + +..+...+.... .+..||.||........ . .++
T Consensus 280 ~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD-- 357 (512)
T TIGR03689 280 RAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLD-- 357 (512)
T ss_pred HHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccc--
Confidence 11111 13578999999997431 1 223333332221 33445555544433221 1 223
Q ss_pred ceEecCCCChHHHHHHHHHhhc
Q 001603 132 HIYNLEVLSNDEALQLFSMKAF 153 (1046)
Q Consensus 132 ~~~~l~~L~~~ea~~Lf~~~a~ 153 (1046)
..++++..+.++..++|..+..
T Consensus 358 ~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 358 VKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred eEEEeCCCCHHHHHHHHHHHhh
Confidence 3799999999999999998863
No 137
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.56 E-value=6.5e-05 Score=55.18 Aligned_cols=39 Identities=36% Similarity=0.590 Sum_probs=22.1
Q ss_pred CCCEEecCCCCCCCCCCcccccCcCCCCeeeCCCCCCcccc
Q 001603 723 SLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLP 763 (1046)
Q Consensus 723 ~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp 763 (1046)
+|++|++++|++. .+|..+++|++|+.|++++|+++.++
T Consensus 2 ~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4666666666662 35555666666666666666665544
No 138
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.0015 Score=72.61 Aligned_cols=132 Identities=18% Similarity=0.215 Sum_probs=80.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
+-|||..|.|||.|++++.+......+...++... .......+...+.. ...+..++..
T Consensus 116 lfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~---------se~f~~~~v~a~~~----------~~~~~Fk~~y-- 174 (408)
T COG0593 116 LFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT---------SEDFTNDFVKALRD----------NEMEKFKEKY-- 174 (408)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc---------HHHHHHHHHHHHHh----------hhHHHHHHhh--
Confidence 67999999999999999999887766643333211 33333444444332 1234555555
Q ss_pred CeEEEEEecCCChH---H-HHHHhhccCC-CCCCCEEEEEeCCh---------hhHHHhcCCCcceEecCCCChHHHHHH
Q 001603 82 KKVLLVIDDVADVE---Q-LQNLARKRDW-FGPGSKIVITTRDK---------QLLVAHEVDEEHIYNLEVLSNDEALQL 147 (1046)
Q Consensus 82 kr~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~IiiTTR~~---------~~~~~~~~~~~~~~~l~~L~~~ea~~L 147 (1046)
.-=++++||++-.. . -+++...++. ...|-.||+|++.. .+....... -++++.+++.+.....
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~G--l~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWG--LVVEIEPPDDETRLAI 252 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhce--eEEeeCCCCHHHHHHH
Confidence 33488899996421 1 2233333221 23445899998533 222222222 3899999999999999
Q ss_pred HHHhhcCCC
Q 001603 148 FSMKAFKTR 156 (1046)
Q Consensus 148 f~~~a~~~~ 156 (1046)
+.+++....
T Consensus 253 L~kka~~~~ 261 (408)
T COG0593 253 LRKKAEDRG 261 (408)
T ss_pred HHHHHHhcC
Confidence 998765443
No 139
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.53 E-value=1.1e-05 Score=81.40 Aligned_cols=245 Identities=22% Similarity=0.230 Sum_probs=118.6
Q ss_pred ccCCCCCeEeccccccc-----ccchhcccCCCCcEEecCCCCC----------CccchhhhhccCcCcEEeccCCCCCC
Q 001603 508 GSMNDLSELFLDRTTIE-----ELPLSIQHLTGLVLLNLKDCKN----------LKSLSHTLRRLQCLKNLTLSGCSKLK 572 (1046)
Q Consensus 508 ~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~L~~~~~----------~~~l~~~l~~l~~L~~L~L~~~~~~~ 572 (1046)
..+..+.+++|++|.+. .+...+.+-.+|+..++++-.. +..+..++.++|.|+..+||.|.+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34556666666666654 3444455566666666664221 11123445566777777777766665
Q ss_pred cCCccc----cCCcccceeeccCccccccCcc-cccCCCCCEEecCCCCCCCccCCccCCCCCCCEEeccCCCCCCCc--
Q 001603 573 KFPESL----GSMKDLMELFLDGTSIAEVPSS-IELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNV-- 645 (1046)
Q Consensus 573 ~~p~~~----~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~-- 645 (1046)
..|+.+ ..-+.|..|.+++|.+..+... ++. .|.+ |..| .-..+-|.|++..+..|+.-.-.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~--la~n-------KKaa~kp~Le~vicgrNRlengs~~ 175 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFH--LAYN-------KKAADKPKLEVVICGRNRLENGSKE 175 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHH--HHHH-------hhhccCCCceEEEeccchhccCcHH
Confidence 555433 2334455555555544422110 000 0000 0000 01223456666666665432211
Q ss_pred --CcccCCCCCCceeeccCccccCC------CcchhhccCCceeecCCCCCCCCCCCcccCcccccccCcCCcccccCCC
Q 001603 646 --PETLGQVESLEELDISGTAIRRP------PSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPS 717 (1046)
Q Consensus 646 --~~~~~~l~~L~~L~Ls~n~l~~~------p~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1046)
...+..-.+|+++.+..|.|..- ...++.+.+|+.|+|..|..+...+. .+...
T Consensus 176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~------------------~La~a 237 (388)
T COG5238 176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSR------------------YLADA 237 (388)
T ss_pred HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHH------------------HHHHH
Confidence 11222235677777777766532 22344566777777776653321100 00111
Q ss_pred ccCCCCCCEEecCCCCCCCCCCccccc-----CcCCCCeeeCCCCCCc-------ccchhh-hhccccCeecccccc
Q 001603 718 LSGLHSLSKLDLSDCGLGEGAIPNDIG-----NLCSLKQLNLSQNNFV-------TLPASI-NSLFNLGQLDLEDCK 781 (1046)
Q Consensus 718 l~~l~~L~~L~Ls~n~l~~~~ip~~l~-----~l~~L~~L~Ls~n~l~-------~lp~~i-~~l~~L~~L~L~~c~ 781 (1046)
+...+.|++|.+.+|-++.......+. ..|+|..|-..+|.+. .+|... ..+|-|..|.+.+|+
T Consensus 238 l~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 238 LCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred hcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 233445777777777664433322221 2466777777776543 233222 356666667766664
No 140
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.002 Score=77.30 Aligned_cols=100 Identities=11% Similarity=0.055 Sum_probs=65.1
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCCh-hhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDK-QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|||+++.. +..+.|...+......+.+|++|.+. .+..... .....++++.++.++..+.+.+.+.....
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~-SR~~~i~f~~l~~~el~~~L~~~a~~egl 197 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATIL-SRCQRFDFHRHSVADMAAHLRKIAAAEGI 197 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHH-hccceeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 45678999999754 45666666555444566776666543 3332221 12237899999999998888887654332
Q ss_pred CCchHHHHHHHHHHHhCCCchHHHHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLALTVL 183 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal~~~ 183 (1046)
. -..+.+..|++.++|.+..+...
T Consensus 198 ~--i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 198 N--LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred C--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 22356788999999988765443
No 141
>PRK08181 transposase; Validated
Probab=97.52 E-value=0.00032 Score=74.50 Aligned_cols=33 Identities=21% Similarity=0.105 Sum_probs=26.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
|.|+|++|+|||.||.++.+.+..+.-.+.|+.
T Consensus 109 lll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 109 LLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred EEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 689999999999999999987765544456665
No 142
>CHL00181 cbbX CbbX; Provisional
Probab=97.51 E-value=0.0022 Score=69.44 Aligned_cols=132 Identities=14% Similarity=0.124 Sum_probs=70.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccc-c-ceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHE-F-DGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL 79 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 79 (1046)
|.++|++|+||||+|+.+++..... + ...-|+... ..++.. ..... ........+.+ .
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~---------~~~l~~----~~~g~------~~~~~~~~l~~-a 121 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT---------RDDLVG----QYIGH------TAPKTKEVLKK-A 121 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec---------HHHHHH----HHhcc------chHHHHHHHHH-c
Confidence 6789999999999999998864321 1 111133211 111211 11100 00011112222 1
Q ss_pred cCCeEEEEEecCCCh-----------HHHHHHhhccCCCCCCCEEEEEeCChhhHHHh------cCCCcceEecCCCChH
Q 001603 80 RQKKVLLVIDDVADV-----------EQLQNLARKRDWFGPGSKIVITTRDKQLLVAH------EVDEEHIYNLEVLSND 142 (1046)
Q Consensus 80 ~~kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~------~~~~~~~~~l~~L~~~ 142 (1046)
.+ -+|+||+++.. +..+.|.........+.+||.++......... ...-...+++++++.+
T Consensus 122 ~g--gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~ 199 (287)
T CHL00181 122 MG--GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPE 199 (287)
T ss_pred cC--CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHH
Confidence 22 48899999752 33444544444334456677776543332111 1111237999999999
Q ss_pred HHHHHHHHhhcCC
Q 001603 143 EALQLFSMKAFKT 155 (1046)
Q Consensus 143 ea~~Lf~~~a~~~ 155 (1046)
|..+++...+-+.
T Consensus 200 el~~I~~~~l~~~ 212 (287)
T CHL00181 200 ELLQIAKIMLEEQ 212 (287)
T ss_pred HHHHHHHHHHHHh
Confidence 9999988887543
No 143
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.50 E-value=0.0029 Score=75.18 Aligned_cols=99 Identities=16% Similarity=0.092 Sum_probs=64.0
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEe-CChhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITT-RDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT-R~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|+|+++.. .....|...+....+.+++|++| ....+..... .....++++.++.++..+.+.+.+-+...
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~-SRcq~~~f~~l~~~el~~~L~~i~~kegi 209 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVL-SRCQRFDLRRIEADVLAAHLSRIAAKEGV 209 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHH-hheeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 44557899999765 34556665555445667766555 4344433322 22247999999999999998887644332
Q ss_pred CCchHHHHHHHHHHHhCCCchHHHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLALTV 182 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal~~ 182 (1046)
. -..+....|++.++|.+.-+..
T Consensus 210 ~--i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 210 E--VEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred C--CCHHHHHHHHHHcCCCHHHHHH
Confidence 1 2235678899999998876543
No 144
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.50 E-value=6.1e-05 Score=55.33 Aligned_cols=41 Identities=29% Similarity=0.520 Sum_probs=34.1
Q ss_pred CCCCeeeCCCCCCcccchhhhhccccCeeccccccccccCCC
Q 001603 747 CSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMPQ 788 (1046)
Q Consensus 747 ~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~ip~ 788 (1046)
++|++|++++|+++.+|..+++|++|+.|++++|+ ++.++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 47999999999999999889999999999999995 445544
No 145
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.0026 Score=73.95 Aligned_cols=100 Identities=9% Similarity=0.060 Sum_probs=62.3
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCC-hhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRD-KQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|+|+++.. +....+...+....+...+|++|.+ ..+..... .....+++.+++.++..+.+...+-....
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~-SRc~~i~f~~ls~~el~~~L~~i~k~egi 196 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTIL-SRCQRFIFSKPTKEQIKEYLKRICNEEKI 196 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHH-HhceEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 56679999999865 3455666555544455666655543 33332221 11237999999999998888876643332
Q ss_pred CCchHHHHHHHHHHHhCCCchHHHHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLALTVL 183 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal~~~ 183 (1046)
. ...+.+..+++.++|.+..+...
T Consensus 197 ~--id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 197 E--YEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred C--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 22355677889999987655443
No 146
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.49 E-value=0.0013 Score=76.23 Aligned_cols=100 Identities=12% Similarity=0.091 Sum_probs=66.2
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCChhh-HHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQL-LVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|+|+++.. +....|+..+....+.+++|++|.+..- ..... .....+++.+++.++..+.+.+.+.....
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~-SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi 194 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATIL-SRTQHFRFKQIPQNSIISHLKTILEKEGV 194 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHH-hhceeEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 45668899999865 4456666665555567777777766432 22221 12348999999999999888876644332
Q ss_pred CCchHHHHHHHHHHHhCCCchHHHHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLALTVL 183 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal~~~ 183 (1046)
. -..+.+..|++.++|.+.-+..+
T Consensus 195 ~--i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 195 S--YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred C--CCHHHHHHHHHHcCCcHHHHHHH
Confidence 2 22356788999999988655443
No 147
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.49 E-value=0.0033 Score=77.31 Aligned_cols=97 Identities=12% Similarity=0.157 Sum_probs=61.3
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCCh-hhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDK-QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|||+++.. +....|+..+......+.+|++|.+. .+..... .....|+++.++.++..+++.+.+-....
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIr-SRc~~v~F~~l~~~~l~~~L~~il~~EGv 197 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIR-SRTHHYPFRLVPPEVMRGYLERICAQEGV 197 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHH-hheeEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 55567889999865 44556666555445666666555443 3433322 22248999999999988888776533221
Q ss_pred CCchHHHHHHHHHHHhCCCchHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLAL 180 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal 180 (1046)
. ...+....|++.++|.+..+
T Consensus 198 ~--id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 198 P--VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred C--CCHHHHHHHHHHcCCCHHHH
Confidence 1 12345678899999988443
No 148
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.48 E-value=0.00086 Score=75.74 Aligned_cols=150 Identities=15% Similarity=0.168 Sum_probs=79.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
|.++|++|+|||++|+++++.....|- .+. . ..+..... +. ......+.+......
T Consensus 182 vLL~GppGTGKT~LAkalA~~l~~~fi---~i~--~---------s~l~~k~~---ge-------~~~~lr~lf~~A~~~ 237 (398)
T PTZ00454 182 VLLYGPPGTGKTMLAKAVAHHTTATFI---RVV--G---------SEFVQKYL---GE-------GPRMVRDVFRLAREN 237 (398)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEE---EEe--h---------HHHHHHhc---ch-------hHHHHHHHHHHHHhc
Confidence 679999999999999999987654331 111 0 01111000 00 000011112222246
Q ss_pred CeEEEEEecCCCh------------H----HHHHHhhccCCC--CCCCEEEEEeCChhhHHHhcC---CCcceEecCCCC
Q 001603 82 KKVLLVIDDVADV------------E----QLQNLARKRDWF--GPGSKIVITTRDKQLLVAHEV---DEEHIYNLEVLS 140 (1046)
Q Consensus 82 kr~LlVlDdv~~~------------~----~~~~l~~~~~~~--~~gs~IiiTTR~~~~~~~~~~---~~~~~~~l~~L~ 140 (1046)
.+.+|+||+++.. . .+..+......+ ..+..||+||.........-. .-.+.+++...+
T Consensus 238 ~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~ 317 (398)
T PTZ00454 238 APSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 317 (398)
T ss_pred CCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcC
Confidence 7889999998742 0 122333332221 235567777775543322111 112378999999
Q ss_pred hHHHHHHHHHhhcCCCCC-CchHHHHHHHHHHHhCCCchH
Q 001603 141 NDEALQLFSMKAFKTRQP-MGEYVELSKRVLKYAGGLPLA 179 (1046)
Q Consensus 141 ~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlPLa 179 (1046)
.++..++|..+..+.... .-+ ..++++.+.|.--|
T Consensus 318 ~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~sga 353 (398)
T PTZ00454 318 RRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKISAA 353 (398)
T ss_pred HHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCCHH
Confidence 999999998776433211 112 34556666665433
No 149
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.48 E-value=0.00093 Score=74.32 Aligned_cols=123 Identities=15% Similarity=0.241 Sum_probs=65.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
+.++|++|+||||+|+++++.....| ..+. ... +....+. ..+.+..... .+.+
T Consensus 46 lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~~~-----~~~~~i~-~~l~~~~~~~----------------~~~~ 99 (316)
T PHA02544 46 LLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-GSD-----CRIDFVR-NRLTRFASTV----------------SLTG 99 (316)
T ss_pred EEeeCcCCCCHHHHHHHHHHHhCccc---eEec-cCc-----ccHHHHH-HHHHHHHHhh----------------cccC
Confidence 45689999999999999998764321 2222 111 1112111 1111111000 0113
Q ss_pred CeEEEEEecCCCh---HHHHHHhhccCCCCCCCEEEEEeCChhhHHHhcCCCcceEecCCCChHHHHHHHHH
Q 001603 82 KKVLLVIDDVADV---EQLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSM 150 (1046)
Q Consensus 82 kr~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 150 (1046)
.+-+||+||++.. +..+.+.........+.++|+||.........-......++++..+.++..+++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 4457889999865 22233333233345678888888765422111111112678888888888776654
No 150
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.45 E-value=0.0023 Score=76.43 Aligned_cols=97 Identities=14% Similarity=0.122 Sum_probs=61.3
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEe-CChhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITT-RDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT-R~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|+|+++.. ..+..|+..+........+|++| +...+..... .....+++.+++.++..+.+...+-....
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~-SRcq~ieF~~L~~eeI~~~L~~il~kegI 195 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTIL-SRVQRFNFRRISEDEIVSRLEFILEKENI 195 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHH-hhceeEEccCCCHHHHHHHHHHHHHHcCC
Confidence 56668899999854 45666666555444555555444 4444433322 22238999999999998888876533221
Q ss_pred CCchHHHHHHHHHHHhCCCchHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLAL 180 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal 180 (1046)
....+.+..+++.++|.+.-+
T Consensus 196 --~id~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 196 --SYEKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred --CCCHHHHHHHHHHcCCCHHHH
Confidence 112345778999999976533
No 151
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.0052 Score=73.62 Aligned_cols=97 Identities=12% Similarity=0.111 Sum_probs=62.0
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEe-CChhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITT-RDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT-R~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|+|+++.. +....|...+......+.+|++| +...+..... ....++++++++.++..+.+...+-...-
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~-SRc~iv~f~~ls~~ei~~~L~~ia~~egi 198 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTIL-SRCQIFDFNRIQVADIVNHLQYVASKEGI 198 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHH-hhhheeecCCCCHHHHHHHHHHHHHHcCC
Confidence 44557899999865 34666666555445566666555 4444443322 22238999999999999888876644332
Q ss_pred CCchHHHHHHHHHHHhCCCchHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLAL 180 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal 180 (1046)
. ...+.+..|++.++|..--+
T Consensus 199 ~--i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 199 T--AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred C--CCHHHHHHHHHHcCCCHHHH
Confidence 1 12245778899999976544
No 152
>PRK06526 transposase; Provisional
Probab=97.43 E-value=0.00027 Score=74.75 Aligned_cols=25 Identities=28% Similarity=0.115 Sum_probs=21.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
|.|+|++|+|||+||.++......+
T Consensus 101 lll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 101 VVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHC
Confidence 6899999999999999998866543
No 153
>CHL00176 ftsH cell division protein; Validated
Probab=97.43 E-value=0.0027 Score=75.96 Aligned_cols=145 Identities=17% Similarity=0.206 Sum_probs=81.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
|.++|++|+|||++|++++...... |+.. + ..++..... + .........+......
T Consensus 219 VLL~GPpGTGKT~LAralA~e~~~p-----~i~i----s-----~s~f~~~~~-------g---~~~~~vr~lF~~A~~~ 274 (638)
T CHL00176 219 VLLVGPPGTGKTLLAKAIAGEAEVP-----FFSI----S-----GSEFVEMFV-------G---VGAARVRDLFKKAKEN 274 (638)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC-----eeec----c-----HHHHHHHhh-------h---hhHHHHHHHHHHHhcC
Confidence 6799999999999999999865332 2220 0 111111000 0 0011112233344456
Q ss_pred CeEEEEEecCCChH----------------HHHHHhhccCCC--CCCCEEEEEeCChhhHHH-h----cCCCcceEecCC
Q 001603 82 KKVLLVIDDVADVE----------------QLQNLARKRDWF--GPGSKIVITTRDKQLLVA-H----EVDEEHIYNLEV 138 (1046)
Q Consensus 82 kr~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~IiiTTR~~~~~~~-~----~~~~~~~~~l~~ 138 (1046)
.+.+|+|||+|... .+..+......+ ..+-.||.||........ . ..+ ..+.++.
T Consensus 275 ~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd--~~I~v~l 352 (638)
T CHL00176 275 SPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFD--RQITVSL 352 (638)
T ss_pred CCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCc--eEEEECC
Confidence 78999999997431 133344333222 234566666665443322 1 122 3789999
Q ss_pred CChHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC
Q 001603 139 LSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGG 175 (1046)
Q Consensus 139 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G 175 (1046)
.+.++-.++++.++..... ........+++.+.|
T Consensus 353 Pd~~~R~~IL~~~l~~~~~---~~d~~l~~lA~~t~G 386 (638)
T CHL00176 353 PDREGRLDILKVHARNKKL---SPDVSLELIARRTPG 386 (638)
T ss_pred CCHHHHHHHHHHHHhhccc---chhHHHHHHHhcCCC
Confidence 9999999999988754221 112234567777777
No 154
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.0022 Score=76.79 Aligned_cols=100 Identities=17% Similarity=0.103 Sum_probs=62.4
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCCh-hhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDK-QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|+|+++.. +....|+..+........+|++|.+. .+..... .....+++..++.++..+.+.+.+.+...
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIr-SRc~~~~f~~l~~~ei~~~L~~ia~kegi 198 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTII-SRCQRFDFRRIPLEAMVQHLSEIAEKESI 198 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHH-hheeEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 45568899999865 45666666555434455555555443 3333322 22237899999999988888877644322
Q ss_pred CCchHHHHHHHHHHHhCCCchHHHHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLALTVL 183 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal~~~ 183 (1046)
. -..+.+..|+++++|.+..+..+
T Consensus 199 ~--is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 199 E--IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred C--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 11245778999999988655443
No 155
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.37 E-value=0.0058 Score=62.28 Aligned_cols=175 Identities=20% Similarity=0.230 Sum_probs=101.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh-
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL- 79 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L- 79 (1046)
++.++|.-|.|||.+.|++....-+.=-..+.+. ...-+...+...+..++..... +........+.+.|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~------~~~~s~~~~~~ai~~~l~~~p~---~~~~~~~e~~~~~L~ 123 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID------KPTLSDATLLEAIVADLESQPK---VNVNAVLEQIDRELA 123 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEec------CcchhHHHHHHHHHHHhccCcc---chhHHHHHHHHHHHH
Confidence 4789999999999999966665443212222222 2222366677777777765222 34443444444433
Q ss_pred ----cCCe-EEEEEecCCCh--HHHHHHhhc--cC-CCCCCCEEEEEeCCh-------hhHHHhcCCCcce-EecCCCCh
Q 001603 80 ----RQKK-VLLVIDDVADV--EQLQNLARK--RD-WFGPGSKIVITTRDK-------QLLVAHEVDEEHI-YNLEVLSN 141 (1046)
Q Consensus 80 ----~~kr-~LlVlDdv~~~--~~~~~l~~~--~~-~~~~gs~IiiTTR~~-------~~~~~~~~~~~~~-~~l~~L~~ 141 (1046)
+++| +.+++||..+. ++++.+..- +. .+..--+|+..-..+ .+....... ..+ |++.|++.
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R-~~ir~~l~P~~~ 202 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQR-IDIRIELPPLTE 202 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhhe-EEEEEecCCcCh
Confidence 4677 99999998653 334433322 11 111112233222111 111111111 124 99999999
Q ss_pred HHHHHHHHHhhcCCCCCCchH-HHHHHHHHHHhCCCchHHHHHhh
Q 001603 142 DEALQLFSMKAFKTRQPMGEY-VELSKRVLKYAGGLPLALTVLGS 185 (1046)
Q Consensus 142 ~ea~~Lf~~~a~~~~~~~~~~-~~~~~~i~~~~~GlPLal~~~~~ 185 (1046)
++...++.++..+...+.+-+ .+....|.....|.|.++..++.
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 999999888876554443332 35567888999999999987764
No 156
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.36 E-value=0.0033 Score=72.66 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=60.9
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCCh-hhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDK-QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|+|+++.. +....|...+........+|++|... .+..... .....+++++++.++..+.+.+.+-+.+.
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~-sRc~~v~f~~l~~~el~~~L~~~~~~eg~ 198 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTIL-SRCQKMHLKRIPEETIIDKLALIAKQEGI 198 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHH-HhceEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 56678899999755 34555555554444566676666443 3322221 12237999999999998888876643221
Q ss_pred CCchHHHHHHHHHHHhCCCchHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLAL 180 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal 180 (1046)
.-..+.+..|+++++|.+.-+
T Consensus 199 --~i~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 199 --ETSREALLPIARAAQGSLRDA 219 (451)
T ss_pred --CCCHHHHHHHHHHcCCCHHHH
Confidence 122356788999999976533
No 157
>PRK09183 transposase/IS protein; Provisional
Probab=97.35 E-value=0.0006 Score=72.68 Aligned_cols=33 Identities=24% Similarity=0.137 Sum_probs=24.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
|.|+|+.|+|||+||.++......+-..+.|+.
T Consensus 105 v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 105 IVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 789999999999999999876543322334543
No 158
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.35 E-value=0.0016 Score=78.14 Aligned_cols=112 Identities=16% Similarity=0.078 Sum_probs=60.5
Q ss_pred HHHHHHhhcCCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEE--EeCChhhH-HHhcCCCcceEecCCCChHHHHH
Q 001603 72 INIIGSRLRQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVI--TTRDKQLL-VAHEVDEEHIYNLEVLSNDEALQ 146 (1046)
Q Consensus 72 ~~~i~~~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iii--TTR~~~~~-~~~~~~~~~~~~l~~L~~~ea~~ 146 (1046)
...+.+.+.++++.++-|+.|.. ..|+.+...+....+...|+| ||++.... .... ..-..+.+.+++.+|.++
T Consensus 282 Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLr-SR~~~i~~~pls~edi~~ 360 (615)
T TIGR02903 282 QNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALR-SRCAEVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHH-hceeEEEeCCCCHHHHHH
Confidence 45556666666777666555433 224444333332334444555 56644321 1111 111267899999999999
Q ss_pred HHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHhhh
Q 001603 147 LFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSF 186 (1046)
Q Consensus 147 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~ 186 (1046)
++.+.+...... -..+..+.|.+++..-+-|+..++..
T Consensus 361 Il~~~a~~~~v~--ls~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 361 IVLNAAEKINVH--LAAGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHHHHcCCC--CCHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 999876532211 11345556666665456666655543
No 159
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.34 E-value=0.00026 Score=70.67 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=25.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
+.|+|..|+|||.||.++.+.+..+=..+.|+.
T Consensus 50 l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 50 LILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred EEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 679999999999999999986655434456665
No 160
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.33 E-value=0.00093 Score=69.93 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=44.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
+.++|.+|+|||+||.++++.+..+-..+.++. +.++...+-..... . ......+.+.+.
T Consensus 102 ~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it-----------~~~l~~~l~~~~~~------~--~~~~~~~l~~l~- 161 (244)
T PRK07952 102 FIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT-----------VADIMSAMKDTFSN------S--ETSEEQLLNDLS- 161 (244)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-----------HHHHHHHHHHHHhh------c--cccHHHHHHHhc-
Confidence 579999999999999999998766544555654 34444433332210 0 111223444454
Q ss_pred CeEEEEEecCCC
Q 001603 82 KKVLLVIDDVAD 93 (1046)
Q Consensus 82 kr~LlVlDdv~~ 93 (1046)
+.=+|||||+..
T Consensus 162 ~~dlLvIDDig~ 173 (244)
T PRK07952 162 NVDLLVIDEIGV 173 (244)
T ss_pred cCCEEEEeCCCC
Confidence 344888899954
No 161
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.32 E-value=1.1e-05 Score=72.83 Aligned_cols=98 Identities=16% Similarity=0.266 Sum_probs=72.4
Q ss_pred cEEEeCCccC---CCchhcccc--CccEEEecCCCCCCCCCCC--CCCCceEEEcCCCCchhhcccccCCCCCcEEEcCC
Q 001603 353 RLLKIDNLQL---PEGLEYLSN--KLRLLDWHRYPLKSLPSNF--QLEKTVEFNMCYSRIEELWNEIKYLNMLKVMKLSH 425 (1046)
Q Consensus 353 r~L~l~~~~l---~~~~~~l~~--~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~ 425 (1046)
..|+|+++.+ ++....+.. .|...++++|.++++|..| .++.++.|+|++|.|.++|.++..++.|+.|+++.
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF 109 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc
Confidence 3455555532 343333332 4777889999999999888 56688999999999999999999999999999999
Q ss_pred CcCCCCCCCCCCCCCCCEEEeeCCC
Q 001603 426 SQNLIKTPDFTGVPNLEELILEGCT 450 (1046)
Q Consensus 426 ~~~~~~~~~l~~l~~L~~L~L~~~~ 450 (1046)
|.+...+..+..+.+|-.|+..+|.
T Consensus 110 N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 110 NPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred CccccchHHHHHHHhHHHhcCCCCc
Confidence 8877666666667777777766643
No 162
>PRK10536 hypothetical protein; Provisional
Probab=97.31 E-value=0.00096 Score=69.14 Aligned_cols=116 Identities=14% Similarity=0.189 Sum_probs=61.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH-H-ccccceeEEEEechhhhc----ccCCHHHHHHHH----HHHHhhccCcccccccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDL-I-SHEFDGSTFLANVREKSE----KEGSVVSLQKQL----LSDLLKLADISIWNVDD 70 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~-~-~~~f~~~~~~~~~~~~~~----~~~~~~~l~~~l----l~~l~~~~~~~~~~~~~ 70 (1046)
+|.+.|++|+|||+||.++... + ...|+..+.....-+..+ -++++.+-..-. ...+..-.+. .....
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~L~~~~~~--~~~~~ 153 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGA--SFMQY 153 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHHHHHHhCh--HHHHH
Confidence 4789999999999999998873 3 444554333322211111 133333322222 2222111010 00000
Q ss_pred hH--------HHHHHhhcCCeE---EEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCChh
Q 001603 71 GI--------NIIGSRLRQKKV---LLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQ 121 (1046)
Q Consensus 71 ~~--------~~i~~~L~~kr~---LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~ 121 (1046)
.. -.-..+++++.+ +||+|++.+. .+...+... .+.+|+||+|--..+
T Consensus 154 ~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~~sk~v~~GD~~Q 214 (262)
T PRK10536 154 CLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGENVTVIVNGDITQ 214 (262)
T ss_pred HHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCCCCEEEEeCChhh
Confidence 00 000124456544 9999999865 556666554 478999999876544
No 163
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.29 E-value=7.3e-05 Score=89.99 Aligned_cols=110 Identities=25% Similarity=0.227 Sum_probs=78.7
Q ss_pred ccccceeeccCCcCCccccccccccCCCCCeEecccccccccchhcccCCCCcEEecCCCCCCc-cchhhhhccCcCcEE
Q 001603 485 MKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLK-SLSHTLRRLQCLKNL 563 (1046)
Q Consensus 485 l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~-~l~~~l~~l~~L~~L 563 (1046)
+|+|+.|.+.+-............++++|..|++++++++.+ .++.++++|+.|.+.+-.... .--..+.+|++|+.|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 778888888775444455556677899999999999999988 788999999999998755443 223456779999999
Q ss_pred eccCCCCCCcC------CccccCCcccceeeccCcccc
Q 001603 564 TLSGCSKLKKF------PESLGSMKDLMELFLDGTSIA 595 (1046)
Q Consensus 564 ~L~~~~~~~~~------p~~~~~l~~L~~L~L~~~~i~ 595 (1046)
|+|.-...... -+.-..+++|+.|+.+++.+.
T Consensus 226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred eccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 99875443321 111234677777777777665
No 164
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.0056 Score=66.81 Aligned_cols=95 Identities=13% Similarity=0.135 Sum_probs=62.5
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCCh-hhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDK-QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|||+++.. ..-..|+..+....+++.+|++|... .++.... ..-..+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIr-SRCq~i~~~~~~~~~~~~~L~~~~----~ 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIR-SRCQRLEFKLPPAHEALAWLLAQG----V 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHH-hhheEeeCCCcCHHHHHHHHHHcC----C
Confidence 45678999999875 33445555554445677777777654 3433322 222378999999999998887531 1
Q ss_pred CCchHHHHHHHHHHHhCCCchHHHHHh
Q 001603 158 PMGEYVELSKRVLKYAGGLPLALTVLG 184 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal~~~~ 184 (1046)
. .+.+..++..++|.|+....+.
T Consensus 187 -~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 -S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1236678999999998765554
No 165
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.25 E-value=0.00078 Score=70.99 Aligned_cols=90 Identities=21% Similarity=0.266 Sum_probs=56.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCc-cc--cccc--------c
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADI-SI--WNVD--------D 70 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~-~~--~~~~--------~ 70 (1046)
++|.|.+|+||||||+.+++.++.+|+..+++..+.+-... +.++.+++...=...... .. .+.. .
T Consensus 72 ~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~E---v~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~ 148 (274)
T cd01133 72 IGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTRE---GNDLYHEMKESGVLSKTALVYGQMNEPPGARARVAL 148 (274)
T ss_pred EEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHH---HHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 68999999999999999999998888878887766553322 555555554321100000 00 0110 1
Q ss_pred hHHHHHHhh--c-CCeEEEEEecCCCh
Q 001603 71 GINIIGSRL--R-QKKVLLVIDDVADV 94 (1046)
Q Consensus 71 ~~~~i~~~L--~-~kr~LlVlDdv~~~ 94 (1046)
..-.+.+++ + ++.+|+|+||+-..
T Consensus 149 ~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 149 TGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 122345555 3 89999999998543
No 166
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.25 E-value=0.006 Score=72.19 Aligned_cols=99 Identities=13% Similarity=0.134 Sum_probs=64.0
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCC-hhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRD-KQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|+|+++.. +.+..|...+....+...+|.+|.+ ..+..... .....+++++++.++..+.+.+.+.....
T Consensus 118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~-SRc~~~~f~~l~~~el~~~L~~i~~~egi 196 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIK-SRCQHFNFRLLSLEKIYNMLKKVCLEDQI 196 (563)
T ss_pred CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHH-HhceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 56668899999865 4466777666554556666665544 33332222 12236999999999998888877654332
Q ss_pred CCchHHHHHHHHHHHhCCCchHHHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLALTV 182 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal~~ 182 (1046)
. -..+.+..|++.++|.+..+..
T Consensus 197 ~--id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 197 K--YEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred C--CCHHHHHHHHHHcCCCHHHHHH
Confidence 2 2235677889999998864433
No 167
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.23 E-value=0.001 Score=63.85 Aligned_cols=33 Identities=33% Similarity=0.376 Sum_probs=25.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFL 33 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 33 (1046)
.+.|+|++|+||||+|+.++..+.......+++
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 378999999999999999998776554233333
No 168
>PRK06921 hypothetical protein; Provisional
Probab=97.22 E-value=0.00097 Score=71.24 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=27.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccc-cceeEEEE
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHE-FDGSTFLA 34 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~ 34 (1046)
+.++|..|+|||+||.++++.+..+ -..++|+.
T Consensus 120 l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 120 IALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred EEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 6799999999999999999987665 34456665
No 169
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.20 E-value=0.0025 Score=75.24 Aligned_cols=147 Identities=17% Similarity=0.224 Sum_probs=77.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
|.++|++|+|||++|++++......| +. + + ..++.... . + .........+......
T Consensus 91 iLL~GppGtGKT~la~alA~~~~~~~-----~~-i---~-----~~~~~~~~----~---g---~~~~~l~~~f~~a~~~ 146 (495)
T TIGR01241 91 VLLVGPPGTGKTLLAKAVAGEAGVPF-----FS-I---S-----GSDFVEMF----V---G---VGASRVRDLFEQAKKN 146 (495)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCe-----ee-c---c-----HHHHHHHH----h---c---ccHHHHHHHHHHHHhc
Confidence 57899999999999999998653322 21 0 0 11111100 0 0 0001112222333345
Q ss_pred CeEEEEEecCCChH----------------HHHHHhhccCCC--CCCCEEEEEeCChhhHH-Hh----cCCCcceEecCC
Q 001603 82 KKVLLVIDDVADVE----------------QLQNLARKRDWF--GPGSKIVITTRDKQLLV-AH----EVDEEHIYNLEV 138 (1046)
Q Consensus 82 kr~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~IiiTTR~~~~~~-~~----~~~~~~~~~l~~ 138 (1046)
.+.+|+|||+|..- .+..+......+ ..+-.||.||....... .. ..+. .++++.
T Consensus 147 ~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~--~i~i~~ 224 (495)
T TIGR01241 147 APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDR--QVVVDL 224 (495)
T ss_pred CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceE--EEEcCC
Confidence 67899999996531 122233332211 22344555665433211 11 2333 799999
Q ss_pred CChHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 001603 139 LSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLP 177 (1046)
Q Consensus 139 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 177 (1046)
.+.++..++|..+..+..... + .....+++.+.|.-
T Consensus 225 Pd~~~R~~il~~~l~~~~~~~-~--~~l~~la~~t~G~s 260 (495)
T TIGR01241 225 PDIKGREEILKVHAKNKKLAP-D--VDLKAVARRTPGFS 260 (495)
T ss_pred CCHHHHHHHHHHHHhcCCCCc-c--hhHHHHHHhCCCCC
Confidence 999999999988764432211 1 12346777777743
No 170
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.19 E-value=0.00067 Score=66.08 Aligned_cols=98 Identities=21% Similarity=0.291 Sum_probs=47.8
Q ss_pred cEEEeCCccCCC--chhccccCccEEEecCCCCCCCCCCCCCCCceEEEcCCCCchhhcccc-cCCCCCcEEEcCCCcCC
Q 001603 353 RLLKIDNLQLPE--GLEYLSNKLRLLDWHRYPLKSLPSNFQLEKTVEFNMCYSRIEELWNEI-KYLNMLKVMKLSHSQNL 429 (1046)
Q Consensus 353 r~L~l~~~~l~~--~~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~-~~l~~L~~L~Ls~~~~~ 429 (1046)
+.+++.+.++|. .+....+....+|+++|.+..++..-.++.|..|.+.+|+|+.+-..+ ..+++|+.|.|.+|.+.
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 334444444433 222333345555666666555554445555666666666665554433 23445555555555422
Q ss_pred --CCCCCCCCCCCCCEEEeeCCC
Q 001603 430 --IKTPDFTGVPNLEELILEGCT 450 (1046)
Q Consensus 430 --~~~~~l~~l~~L~~L~L~~~~ 450 (1046)
.++..+..+|.|++|.+-+|.
T Consensus 102 ~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 102 ELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred hhhhcchhccCCccceeeecCCc
Confidence 122234455555555555543
No 171
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.18 E-value=0.017 Score=63.03 Aligned_cols=93 Identities=17% Similarity=0.202 Sum_probs=62.5
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCCh-hhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDK-QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++=++|+|+++.. .....|+..+....+++.+|.+|.+. .++.... ..-..+.+.+++.+++.+.+.....
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~-SRCq~~~~~~~~~~~~~~~L~~~~~---- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV-SRCQQWVVTPPSTAQAMQWLKGQGI---- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH-hcceeEeCCCCCHHHHHHHHHHcCC----
Confidence 45568889999865 34556666555556677777666654 4444432 2334799999999999998875421
Q ss_pred CCchHHHHHHHHHHHhCCCchHHHHHh
Q 001603 158 PMGEYVELSKRVLKYAGGLPLALTVLG 184 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal~~~~ 184 (1046)
+ ....+++.++|.|+....+.
T Consensus 182 --~----~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 182 --T----VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred --c----hHHHHHHHcCCCHHHHHHHh
Confidence 1 13467899999999776553
No 172
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.17 E-value=0.00019 Score=86.46 Aligned_cols=133 Identities=25% Similarity=0.292 Sum_probs=81.9
Q ss_pred CCCcEEecCCCCCCcc-chhhh-hccCcCcEEeccCCCCC-CcCCccccCCcccceeeccCccccccCcccccCCCCCEE
Q 001603 534 TGLVLLNLKDCKNLKS-LSHTL-RRLQCLKNLTLSGCSKL-KKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLL 610 (1046)
Q Consensus 534 ~~L~~L~L~~~~~~~~-l~~~l-~~l~~L~~L~L~~~~~~-~~~p~~~~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L 610 (1046)
.+|+.|++++...... .|..+ ..+|+|+.|.+.+-... +.+.....++++|..|+++++.++.+ .+++.+++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 4566666665433221 22222 34677777777764432 23344556778888888888888877 667888888888
Q ss_pred ecCCCCCCC-ccCCccCCCCCCCEEeccCCCCCCCc------CcccCCCCCCceeeccCccccC
Q 001603 611 NLNNCSNLV-RLPSCINGLRSLKTLNLSGCSKLQNV------PETLGQVESLEELDISGTAIRR 667 (1046)
Q Consensus 611 ~L~~~~~~~-~l~~~~~~l~~L~~L~Ls~c~~l~~~------~~~~~~l~~L~~L~Ls~n~l~~ 667 (1046)
.+.+-.+.. ..-..+.++++|+.||+|.-...... -+.-..+|+|+.||.|++.+..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 887765543 11234556888888888875443321 1122347788888888776654
No 173
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.16 E-value=0.0027 Score=73.50 Aligned_cols=127 Identities=20% Similarity=0.163 Sum_probs=68.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcc-cCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEK-EGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLR 80 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 80 (1046)
|.++|++|+|||.+|+++++.+...| +..+....... .+.-.. .....++..-.
T Consensus 262 ILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l~~~~vGese~---------------------~l~~~f~~A~~ 316 (489)
T CHL00195 262 LLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKLFGGIVGESES---------------------RMRQMIRIAEA 316 (489)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHhcccccChHHH---------------------HHHHHHHHHHh
Confidence 67999999999999999999765432 21111110000 000000 11111111123
Q ss_pred CCeEEEEEecCCChH--------------HHHHHhhccCCCCCCCEEEEEeCChhhHH-Hh----cCCCcceEecCCCCh
Q 001603 81 QKKVLLVIDDVADVE--------------QLQNLARKRDWFGPGSKIVITTRDKQLLV-AH----EVDEEHIYNLEVLSN 141 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~~--------------~~~~l~~~~~~~~~gs~IiiTTR~~~~~~-~~----~~~~~~~~~l~~L~~ 141 (1046)
..+++|++|++|..- .+..+.........+--||.||....... .. ..+. .+.++..+.
T Consensus 317 ~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~--~i~v~lP~~ 394 (489)
T CHL00195 317 LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDE--IFFLDLPSL 394 (489)
T ss_pred cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCe--EEEeCCcCH
Confidence 578999999997421 01122221221223344556665543221 11 3444 889999999
Q ss_pred HHHHHHHHHhhcCC
Q 001603 142 DEALQLFSMKAFKT 155 (1046)
Q Consensus 142 ~ea~~Lf~~~a~~~ 155 (1046)
++-.++|..+..+.
T Consensus 395 ~eR~~Il~~~l~~~ 408 (489)
T CHL00195 395 EEREKIFKIHLQKF 408 (489)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999887543
No 174
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.13 E-value=0.0021 Score=66.90 Aligned_cols=165 Identities=16% Similarity=0.194 Sum_probs=91.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcc--ccceeEEEEechhhhcccCCHHHHHH--HHHHHHhhccCcccccccchHHHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISH--EFDGSTFLANVREKSEKEGSVVSLQK--QLLSDLLKLADISIWNVDDGINIIGS 77 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~--~ll~~l~~~~~~~~~~~~~~~~~i~~ 77 (1046)
...+|+.|.|||+-|++++..+-. -|++++.-.|+ +...| ..-... .-..++..... ....
T Consensus 60 ~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna---SderG-isvvr~Kik~fakl~~~~~-----------~~~~ 124 (346)
T KOG0989|consen 60 YLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA---SDERG-ISVVREKIKNFAKLTVLLK-----------RSDG 124 (346)
T ss_pred EEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc---ccccc-ccchhhhhcCHHHHhhccc-----------cccC
Confidence 457999999999999999876533 35544432221 11122 110000 00111110000 0000
Q ss_pred hhcCCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCChhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCC
Q 001603 78 RLRQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKT 155 (1046)
Q Consensus 78 ~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 155 (1046)
.-+..--.||||+++.. +.|.++......+...+|-|..|..-......-...-..|+.++|.+++..+-+...|-+.
T Consensus 125 ~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E 204 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKE 204 (346)
T ss_pred CCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHh
Confidence 01112247889999976 5688888877766667775544443332211111222268999999999988888887555
Q ss_pred CCCCchHHHHHHHHHHHhCCCc-hHHHHH
Q 001603 156 RQPMGEYVELSKRVLKYAGGLP-LALTVL 183 (1046)
Q Consensus 156 ~~~~~~~~~~~~~i~~~~~GlP-Lal~~~ 183 (1046)
+-+. ..+..+.|+++++|-- -|+.++
T Consensus 205 ~v~~--d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 205 GVDI--DDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred CCCC--CHHHHHHHHHHcCCcHHHHHHHH
Confidence 4332 2366788999998844 344333
No 175
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.12 E-value=0.0018 Score=71.04 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=27.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
+.++|..|+|||+||.++++.+..+-..++|+.
T Consensus 186 Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 186 LLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 679999999999999999998766544566665
No 176
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.09 E-value=0.0044 Score=70.44 Aligned_cols=121 Identities=20% Similarity=0.180 Sum_probs=77.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLR 80 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 80 (1046)
++.|.|+=++||||+++.+.....+. .+++........... + .+.+... .+.-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~-l----~d~~~~~------------------~~~~~ 92 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIE-L----LDLLRAY------------------IELKE 92 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhh-H----HHHHHHH------------------HHhhc
Confidence 47899999999999997666655444 444442111111100 1 1111111 11111
Q ss_pred CCeEEEEEecCCChHHHHHHhhccCCCCCCCEEEEEeCChhhHHHhc----CCCcceEecCCCChHHHHHHH
Q 001603 81 QKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQLLVAHE----VDEEHIYNLEVLSNDEALQLF 148 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~----~~~~~~~~l~~L~~~ea~~Lf 148 (1046)
.++..++||.|.....|+..+..+...++. +|+||+-+........ ......+++-||+-.|-..+-
T Consensus 93 ~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 93 REKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred cCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 178899999999999999888887766666 8999888765543211 222347999999999987653
No 177
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.09 E-value=0.00014 Score=73.44 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=7.3
Q ss_pred CCCCceeeccCcccc
Q 001603 652 VESLEELDISGTAIR 666 (1046)
Q Consensus 652 l~~L~~L~Ls~n~l~ 666 (1046)
-+.|.+|.+++|.+.
T Consensus 119 ~t~l~HL~l~NnGlG 133 (388)
T COG5238 119 STDLVHLKLNNNGLG 133 (388)
T ss_pred CCCceeEEeecCCCC
Confidence 344555555555443
No 178
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.08 E-value=0.016 Score=63.35 Aligned_cols=93 Identities=12% Similarity=0.099 Sum_probs=61.8
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCChh-hHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++=++|+|+++.. .....|+..+....+++.+|++|.+.+ ++.... ..-..+.+.+++.+++.+.+......
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~-SRC~~~~~~~~~~~~~~~~L~~~~~~--- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIY-SRCQTWLIHPPEEQQALDWLQAQSSA--- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHH-hhceEEeCCCCCHHHHHHHHHHHhcc---
Confidence 56667889999875 345566666555567777777777654 333322 22237999999999999988866411
Q ss_pred CCchHHHHHHHHHHHhCCCchHHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLALT 181 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal~ 181 (1046)
+. ..+...++.++|.|+...
T Consensus 182 --~~--~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 182 --EI--SEILTALRINYGRPLLAL 201 (325)
T ss_pred --Ch--HHHHHHHHHcCCCHHHHH
Confidence 11 235667889999996443
No 179
>PHA00729 NTP-binding motif containing protein
Probab=97.07 E-value=0.0015 Score=66.64 Aligned_cols=23 Identities=35% Similarity=0.284 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
|.|+|.+|+||||||.++.+++.
T Consensus 20 IlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 20 AVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998753
No 180
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.0077 Score=71.93 Aligned_cols=100 Identities=12% Similarity=0.142 Sum_probs=60.4
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCC-hhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRD-KQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|+|+|+.. .....|...+....+...+|++|.+ ..+..... .....+++++++.++..+.+...+-....
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~-SRc~~~~f~~l~~~~i~~~L~~i~~~egi 196 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITIL-SRCQRFDFRRIPLQKIVDRLRYIADQEGI 196 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHH-HhhhhhhcCCCCHHHHHHHHHHHHHHhCC
Confidence 45557889999865 3455566555444456666655544 33433221 12237899999999988887766533322
Q ss_pred CCchHHHHHHHHHHHhCCCch-HHHHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPL-ALTVL 183 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPL-al~~~ 183 (1046)
. -..+....|++.++|..- |+..+
T Consensus 197 ~--i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 197 S--ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred C--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 123556788899988664 44443
No 181
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.05 E-value=0.0016 Score=70.97 Aligned_cols=96 Identities=15% Similarity=0.172 Sum_probs=54.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
+.|+|..|+|||.||.++++.+..+-..+.|+. ...+..++-..... .. ..+.+ +.++
T Consensus 159 l~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~-----------~~~l~~~lk~~~~~------~~---~~~~l-~~l~- 216 (306)
T PRK08939 159 LYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH-----------FPEFIRELKNSISD------GS---VKEKI-DAVK- 216 (306)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE-----------HHHHHHHHHHHHhc------Cc---HHHHH-HHhc-
Confidence 579999999999999999998765534456665 33444444333211 11 11222 2333
Q ss_pred CeEEEEEecCCC--hHHHH--HHhhcc-C-CCCCCCEEEEEeCC
Q 001603 82 KKVLLVIDDVAD--VEQLQ--NLARKR-D-WFGPGSKIVITTRD 119 (1046)
Q Consensus 82 kr~LlVlDdv~~--~~~~~--~l~~~~-~-~~~~gs~IiiTTR~ 119 (1046)
+-=||||||+.. ...|. ++.... . ....+-.+|+||--
T Consensus 217 ~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 217 EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 455899999953 23332 233322 1 11245567778764
No 182
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.04 E-value=7.6e-05 Score=67.68 Aligned_cols=60 Identities=25% Similarity=0.453 Sum_probs=50.6
Q ss_pred CCCCCEEecCCCCCCCCCCcccccCcCCCCeeeCCCCCCcccchhhhhccccCeeccccccc
Q 001603 721 LHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKR 782 (1046)
Q Consensus 721 l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~ 782 (1046)
++.++.|++++|.+. .+|..+..++.|+.|+++.|.+...|..+..|.+|..|+..+|..
T Consensus 76 f~t~t~lNl~~neis--dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 76 FPTATTLNLANNEIS--DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred cchhhhhhcchhhhh--hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence 457788888999884 588889999999999999999999998888888888888877743
No 183
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.03 E-value=0.00017 Score=85.85 Aligned_cols=186 Identities=26% Similarity=0.326 Sum_probs=83.5
Q ss_pred ccccceeeccCCcCCcccccccccc-CCCCCeEeccccc-cc--ccchhcccCCCCcEEecCCCCCCcc--chhhhhccC
Q 001603 485 MKSLKTLVLSGCLKLTKKCLEFAGS-MNDLSELFLDRTT-IE--ELPLSIQHLTGLVLLNLKDCKNLKS--LSHTLRRLQ 558 (1046)
Q Consensus 485 l~~L~~L~L~~~~~l~~~~~~~~~~-l~~L~~L~l~~~~-i~--~lp~~~~~l~~L~~L~L~~~~~~~~--l~~~l~~l~ 558 (1046)
+++|+.|+++++..++......+.. +++|+.|.+.... ++ .+-.....++.|+.|+++.|..... +.....+++
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~ 321 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCP 321 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCc
Confidence 4455555555554444443333332 4455555543333 22 2222334556666666666665422 233344455
Q ss_pred cCcEEeccCCCCCCcCCccccCCcccceeeccCccc----cccCcccccCCCCCEEecCCCCCCCccCCccCCCCCCCEE
Q 001603 559 CLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSI----AEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTL 634 (1046)
Q Consensus 559 ~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~i----~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L 634 (1046)
+|+.|.+..+.. +..++.+.+.+... ......+..+++|+.+.+..|...... ..+
T Consensus 322 ~l~~l~~~~~~~----------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~----------~~~ 381 (482)
T KOG1947|consen 322 NLRELKLLSLNG----------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLG----------LEL 381 (482)
T ss_pred chhhhhhhhcCC----------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcc----------hHH
Confidence 555554443221 23333333333211 011113456667777776666522111 023
Q ss_pred eccCCCCC-CCcCcccCCCCCCceeeccCccccCCCc--chhh-ccCCceeecCCCCCCC
Q 001603 635 NLSGCSKL-QNVPETLGQVESLEELDISGTAIRRPPS--SIFV-MNNLKTLSFSGCNGPP 690 (1046)
Q Consensus 635 ~Ls~c~~l-~~~~~~~~~l~~L~~L~Ls~n~l~~~p~--~~~~-l~~L~~L~L~~~~~~~ 690 (1046)
.+.+|+.+ ..+........+++.|+++.+....... .... +.++..+++.+|....
T Consensus 382 ~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 382 SLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred HhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 33444433 1111112222336777777765443311 1111 5667777777776544
No 184
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.03 E-value=0.00066 Score=68.87 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=20.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
.+.|+|.+|+|||+|+++++..+...
T Consensus 26 ~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 26 NLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999987766
No 185
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0083 Score=63.98 Aligned_cols=142 Identities=18% Similarity=0.363 Sum_probs=85.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh--
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL-- 79 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L-- 79 (1046)
|.+||++|.|||-||++|+++... .|+..+.. ++.+. -..++.+++++.+
T Consensus 188 VLLYGPPGTGKTLLAkAVA~~T~A-----tFIrvvgS---------ElVqK--------------YiGEGaRlVRelF~l 239 (406)
T COG1222 188 VLLYGPPGTGKTLLAKAVANQTDA-----TFIRVVGS---------ELVQK--------------YIGEGARLVRELFEL 239 (406)
T ss_pred eEeeCCCCCcHHHHHHHHHhccCc-----eEEEeccH---------HHHHH--------------HhccchHHHHHHHHH
Confidence 678999999999999999996544 45553321 11111 1123344444444
Q ss_pred -c-CCeEEEEEecCCCh-------------H---HHHHHhhccCCCCC--CCEEEEEeCChhhHHHh-----cCCCcceE
Q 001603 80 -R-QKKVLLVIDDVADV-------------E---QLQNLARKRDWFGP--GSKIVITTRDKQLLVAH-----EVDEEHIY 134 (1046)
Q Consensus 80 -~-~kr~LlVlDdv~~~-------------~---~~~~l~~~~~~~~~--gs~IiiTTR~~~~~~~~-----~~~~~~~~ 134 (1046)
+ ..+.+|.+|.+|.. + .+-+|+..++-|.+ .-|||..|.-.+.+... ..+. .+
T Consensus 240 ArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DR--kI 317 (406)
T COG1222 240 AREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDR--KI 317 (406)
T ss_pred HhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccc--ee
Confidence 2 57899999999742 1 13345555554443 45788777544443221 2444 89
Q ss_pred ecCCCChHHHHHHHHHhhcCCCCC-CchHHHHHHHHHHHhCCCc
Q 001603 135 NLEVLSNDEALQLFSMKAFKTRQP-MGEYVELSKRVLKYAGGLP 177 (1046)
Q Consensus 135 ~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlP 177 (1046)
++..-+.+.-.+.|.-++-+-.-. .-++ +.+++.+.|.-
T Consensus 318 EfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~s 357 (406)
T COG1222 318 EFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFS 357 (406)
T ss_pred ecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCc
Confidence 999888888888998887554422 2233 34556666654
No 186
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.00 E-value=0.022 Score=58.56 Aligned_cols=25 Identities=24% Similarity=0.598 Sum_probs=22.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
|.+||..|.|||++++++.+.+..+
T Consensus 55 vLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 55 VLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred eEEecCCCCCHHHHHHHHHHHHhhc
Confidence 6789999999999999999987664
No 187
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.00 E-value=0.015 Score=69.18 Aligned_cols=97 Identities=11% Similarity=0.073 Sum_probs=60.6
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeC-ChhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTR-DKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR-~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|+|+++.. .....|...+........+|++|. ...+..... .....+++.+++.++..+.+.+.+-+...
T Consensus 118 ~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~-SRc~~~~f~~~~~~ei~~~L~~i~~~egi 196 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATIL-SRCQRFDFKRISVEDIVERLKYILDKEGI 196 (559)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHH-hHheEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 56678899999865 456666665554344555555554 333332221 12237899999999998888877644332
Q ss_pred CCchHHHHHHHHHHHhCCCchHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLAL 180 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal 180 (1046)
.. ..+.+..|++.++|.+..+
T Consensus 197 ~i--~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 197 EY--EDEALRLIARAAEGGMRDA 217 (559)
T ss_pred CC--CHHHHHHHHHHcCCCHHHH
Confidence 21 2355778888888877644
No 188
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.99 E-value=0.0017 Score=71.13 Aligned_cols=90 Identities=14% Similarity=0.155 Sum_probs=54.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcccc-ceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcc-c---ccccchHHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEF-DGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADIS-I---WNVDDGINIIG 76 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~-~---~~~~~~~~~i~ 76 (1046)
++|+|..|+|||||++.+++.+..+. +..+++.-+ .++...+.++.+.+...+....... . .........+.
T Consensus 136 ~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lI---gER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~A 212 (380)
T PRK12608 136 GLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLI---DERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERA 212 (380)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEe---cCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999876654 333333333 2333347788888877655321110 0 01111122223
Q ss_pred Hhh--cCCeEEEEEecCCCh
Q 001603 77 SRL--RQKKVLLVIDDVADV 94 (1046)
Q Consensus 77 ~~L--~~kr~LlVlDdv~~~ 94 (1046)
+++ ++++++||+|++...
T Consensus 213 e~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 213 KRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHcCCCEEEEEeCcHHH
Confidence 333 489999999998654
No 189
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.94 E-value=0.0028 Score=67.21 Aligned_cols=71 Identities=24% Similarity=0.234 Sum_probs=44.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
+.++|.+|+|||.||.++.+++...--.+.|+. ..++..++-..... ......+.+.++
T Consensus 108 l~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~-----------~~el~~~Lk~~~~~---------~~~~~~l~~~l~- 166 (254)
T COG1484 108 LVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT-----------APDLLSKLKAAFDE---------GRLEEKLLRELK- 166 (254)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhc---------CchHHHHHHHhh-
Confidence 579999999999999999998874323345554 44555554444321 122233444333
Q ss_pred CeEEEEEecCCC
Q 001603 82 KKVLLVIDDVAD 93 (1046)
Q Consensus 82 kr~LlVlDdv~~ 93 (1046)
+-=||||||+-.
T Consensus 167 ~~dlLIiDDlG~ 178 (254)
T COG1484 167 KVDLLIIDDIGY 178 (254)
T ss_pred cCCEEEEecccC
Confidence 233889999943
No 190
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.90 E-value=0.0014 Score=67.60 Aligned_cols=33 Identities=36% Similarity=0.511 Sum_probs=28.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
++|+|..|.||||++..+.....++|+.+..+.
T Consensus 16 ~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 16 MVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred EEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 689999999999999999998999996655543
No 191
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.89 E-value=0.0074 Score=75.28 Aligned_cols=129 Identities=14% Similarity=0.117 Sum_probs=66.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcccc------ceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEF------DGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINII 75 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i 75 (1046)
+.++|.+|+||||+|+.+++++.... ...+|..+........... .+.......+
T Consensus 211 ~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~-------------------ge~e~~lk~i 271 (852)
T TIGR03345 211 PILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVK-------------------GEFENRLKSV 271 (852)
T ss_pred eeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccc-------------------hHHHHHHHHH
Confidence 46999999999999999999875432 1223322221110000000 1111111111
Q ss_pred HHhh--cCCeEEEEEecCCChH-------H--HHH-HhhccCCCCCC-CEEEEEeCChhhHHHhcC-----CCcceEecC
Q 001603 76 GSRL--RQKKVLLVIDDVADVE-------Q--LQN-LARKRDWFGPG-SKIVITTRDKQLLVAHEV-----DEEHIYNLE 137 (1046)
Q Consensus 76 ~~~L--~~kr~LlVlDdv~~~~-------~--~~~-l~~~~~~~~~g-s~IiiTTR~~~~~~~~~~-----~~~~~~~l~ 137 (1046)
.+.+ .+++++|++|+++... + ... |.+.+ ..| -++|-||........... ..-..++|+
T Consensus 272 i~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l---~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~ 348 (852)
T TIGR03345 272 IDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL---ARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVE 348 (852)
T ss_pred HHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh---hCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeC
Confidence 1111 2478999999986531 1 111 22222 234 455655554322111100 111379999
Q ss_pred CCChHHHHHHHHHhh
Q 001603 138 VLSNDEALQLFSMKA 152 (1046)
Q Consensus 138 ~L~~~ea~~Lf~~~a 152 (1046)
+++.++..+++....
T Consensus 349 eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 349 EPDEETAIRMLRGLA 363 (852)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999975443
No 192
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.88 E-value=0.02 Score=63.31 Aligned_cols=95 Identities=17% Similarity=0.138 Sum_probs=62.1
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCChh-hHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++=++|+|+++.. ..-..|+..+....+++.+|.+|.+.+ ++..... .-..+.+.+++.+++.+.+.....
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS-RCq~~~~~~~~~~~~~~~L~~~~~---- 181 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS-RCRLHYLAPPPEQYALTWLSREVT---- 181 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh-ccccccCCCCCHHHHHHHHHHccC----
Confidence 56678899999865 345556655555566777776666654 4444322 223789999999999988865421
Q ss_pred CCchHHHHHHHHHHHhCCCchHHHHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLALTVL 183 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal~~~ 183 (1046)
.+ .+.+..+++.++|.|.....+
T Consensus 182 -~~--~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 182 -MS--QDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred -CC--HHHHHHHHHHcCCCHHHHHHH
Confidence 11 133667899999999654433
No 193
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.86 E-value=0.064 Score=59.17 Aligned_cols=93 Identities=17% Similarity=0.249 Sum_probs=60.6
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCC-hhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRD-KQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++=++|+|+++.. +....|+..+....+++.+|.+|.+ ..++..... .-..+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~S-Rcq~i~~~~~~~~~~~~~L~~~~---~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILS-RCRQFPMTVPAPEAAAAWLAAQG---V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHh-cCEEEEecCCCHHHHHHHHHHcC---C-
Confidence 45558889999865 4466666666655677766655555 445444322 22489999999999999887652 1
Q ss_pred CCchHHHHHHHHHHHhCCCchHHHHHh
Q 001603 158 PMGEYVELSKRVLKYAGGLPLALTVLG 184 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal~~~~ 184 (1046)
+. ...++..++|.|+....+.
T Consensus 206 --~~----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 --AD----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred --Ch----HHHHHHHcCCCHHHHHHHH
Confidence 11 1235778899997655443
No 194
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.85 E-value=0.0021 Score=62.73 Aligned_cols=77 Identities=21% Similarity=0.274 Sum_probs=51.4
Q ss_pred ccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCchhhcccccCCCCCcEEEcCCCcCCCCCCCCCC-CCCCCEEEeeCCC
Q 001603 373 LRLLDWHRYPLKSLPSNF-QLEKTVEFNMCYSRIEELWNEIKYLNMLKVMKLSHSQNLIKTPDFTG-VPNLEELILEGCT 450 (1046)
Q Consensus 373 Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~l~~-l~~L~~L~L~~~~ 450 (1046)
=+.+++.++.+..+...- .+.....+||++|.+..++ .+..++.|.+|.|++|++....|.+.. +|+|..|.|.+|.
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 355666666654443321 4556777888888877663 467777888888888877777776543 5677777777754
No 195
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.83 E-value=0.0065 Score=75.16 Aligned_cols=128 Identities=15% Similarity=0.167 Sum_probs=67.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcccc------ceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEF------DGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINII 75 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i 75 (1046)
+.++|++|+|||++|+.+++++...- ...+|..+... +... . .. ..+..+....+
T Consensus 206 ~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~----------l~a~----~----~~-~g~~e~~l~~i 266 (731)
T TIGR02639 206 PLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGS----------LLAG----T----KY-RGDFEERLKAV 266 (731)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHH----------Hhhh----c----cc-cchHHHHHHHH
Confidence 46899999999999999999874431 22334332111 1100 0 00 01111222222
Q ss_pred HHhh-cCCeEEEEEecCCChH----------HHHH-HhhccCCCCCC-CEEEEEeCChhhH------HHhcCCCcceEec
Q 001603 76 GSRL-RQKKVLLVIDDVADVE----------QLQN-LARKRDWFGPG-SKIVITTRDKQLL------VAHEVDEEHIYNL 136 (1046)
Q Consensus 76 ~~~L-~~kr~LlVlDdv~~~~----------~~~~-l~~~~~~~~~g-s~IiiTTR~~~~~------~~~~~~~~~~~~l 136 (1046)
.+.+ +.++.+|++|+++..- +... +.+.+ ..| -++|-+|...+.. ..... .-..+++
T Consensus 267 ~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i~~IgaTt~~e~~~~~~~d~al~r-Rf~~i~v 342 (731)
T TIGR02639 267 VSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKLRCIGSTTYEEYKNHFEKDRALSR-RFQKIDV 342 (731)
T ss_pred HHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCeEEEEecCHHHHHHHhhhhHHHHH-hCceEEe
Confidence 2222 2467899999997431 1222 32322 233 3445444432211 11111 1137999
Q ss_pred CCCChHHHHHHHHHhh
Q 001603 137 EVLSNDEALQLFSMKA 152 (1046)
Q Consensus 137 ~~L~~~ea~~Lf~~~a 152 (1046)
+.++.++..+++....
T Consensus 343 ~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 343 GEPSIEETVKILKGLK 358 (731)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998654
No 196
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.83 E-value=0.0092 Score=74.14 Aligned_cols=147 Identities=12% Similarity=0.170 Sum_probs=76.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHH-HHhhc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINII-GSRLR 80 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i-~~~L~ 80 (1046)
|.++|++|+|||++|+++++.....| +.+. .. ++. .... ......+..+ ...-+
T Consensus 490 iLL~GppGtGKT~lakalA~e~~~~f---i~v~-~~----------~l~----~~~v-------Gese~~i~~~f~~A~~ 544 (733)
T TIGR01243 490 VLLFGPPGTGKTLLAKAVATESGANF---IAVR-GP----------EIL----SKWV-------GESEKAIREIFRKARQ 544 (733)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCE---EEEe-hH----------HHh----hccc-------CcHHHHHHHHHHHHHh
Confidence 57899999999999999999765432 1111 10 111 1000 0011111112 22223
Q ss_pred CCeEEEEEecCCCh--------------HHHHHHhhccCCC--CCCCEEEEEeCChhhHHHhcC---CCcceEecCCCCh
Q 001603 81 QKKVLLVIDDVADV--------------EQLQNLARKRDWF--GPGSKIVITTRDKQLLVAHEV---DEEHIYNLEVLSN 141 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~~~~~~~~---~~~~~~~l~~L~~ 141 (1046)
..+.+|+||+++.. .....++..++.. ..+-.||.||.........-. .-...+.+...+.
T Consensus 545 ~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~ 624 (733)
T TIGR01243 545 AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE 624 (733)
T ss_pred cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH
Confidence 56789999999643 1123344333321 233445556654443322111 1123899999999
Q ss_pred HHHHHHHHHhhcCCCCC-CchHHHHHHHHHHHhCCCc
Q 001603 142 DEALQLFSMKAFKTRQP-MGEYVELSKRVLKYAGGLP 177 (1046)
Q Consensus 142 ~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlP 177 (1046)
++..++|..+.-+.... ..+ ...+++.+.|.-
T Consensus 625 ~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 625 EARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred HHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 99999998765333211 112 345666666644
No 197
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.82 E-value=0.036 Score=61.06 Aligned_cols=88 Identities=15% Similarity=0.185 Sum_probs=48.2
Q ss_pred CeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCChhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCCCC
Q 001603 82 KKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPM 159 (1046)
Q Consensus 82 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 159 (1046)
++-++|+|+++.. +.-..+...+.....+..+|++|.+..-........-..+++.+++.+++.+.+.... . .
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~-~ 187 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----V-A 187 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----C-C
Confidence 3334456888754 2233333333222345667777776543222222222379999999999998886542 1 1
Q ss_pred chHHHHHHHHHHHhCCCchH
Q 001603 160 GEYVELSKRVLKYAGGLPLA 179 (1046)
Q Consensus 160 ~~~~~~~~~i~~~~~GlPLa 179 (1046)
+. . ..+..++|-|+.
T Consensus 188 ~~--~---~~l~~~~g~p~~ 202 (325)
T PRK08699 188 EP--E---ERLAFHSGAPLF 202 (325)
T ss_pred cH--H---HHHHHhCCChhh
Confidence 11 1 123568898864
No 198
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.82 E-value=0.025 Score=60.91 Aligned_cols=143 Identities=20% Similarity=0.226 Sum_probs=81.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHh-hccCc-cc----ccccchHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLL-KLADI-SI----WNVDDGINII 75 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~~~~-~~----~~~~~~~~~i 75 (1046)
|-|+|-+|.|||.+.+++.+....+ .+|+. +.+.. +...+.++++.+.+ ...+. .. .+..+.+..+
T Consensus 33 ~~iyG~sgTGKT~~~r~~l~~~n~~---~vw~n-~~ecf----t~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l 104 (438)
T KOG2543|consen 33 VHIYGHSGTGKTYLVRQLLRKLNLE---NVWLN-CVECF----TYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLL 104 (438)
T ss_pred EEEeccCCCchhHHHHHHHhhcCCc---ceeee-hHHhc----cHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHH
Confidence 5799999999999999999876333 45665 33322 27778888888884 11111 10 1111222223
Q ss_pred HH--hhc--CCeEEEEEecCCChHHHHH-----HhhccCCCCCCCEEEEEeCChhhHHH---hcCCCcceEecCCCChHH
Q 001603 76 GS--RLR--QKKVLLVIDDVADVEQLQN-----LARKRDWFGPGSKIVITTRDKQLLVA---HEVDEEHIYNLEVLSNDE 143 (1046)
Q Consensus 76 ~~--~L~--~kr~LlVlDdv~~~~~~~~-----l~~~~~~~~~gs~IiiTTR~~~~~~~---~~~~~~~~~~l~~L~~~e 143 (1046)
++ ... ++.++||||+++...+.+. +..-..-.....-+|+++-....... ++.....++....-+.+|
T Consensus 105 ~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e 184 (438)
T KOG2543|consen 105 VQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEE 184 (438)
T ss_pred HhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhcccCCCCceEEecCCCCHHH
Confidence 32 122 4689999999987654322 11110000112344555544332222 233333467788899999
Q ss_pred HHHHHHHhh
Q 001603 144 ALQLFSMKA 152 (1046)
Q Consensus 144 a~~Lf~~~a 152 (1046)
-.+++.+.-
T Consensus 185 ~~~Il~~~~ 193 (438)
T KOG2543|consen 185 TQVILSRDN 193 (438)
T ss_pred HHHHHhcCC
Confidence 999987553
No 199
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.82 E-value=0.017 Score=64.08 Aligned_cols=70 Identities=13% Similarity=0.237 Sum_probs=46.9
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCChh-hHHHhcCCCcceEecCCCChHHHHHHHHHh
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMK 151 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 151 (1046)
+++=++|+|+++.. +....|...+....+++.+|.+|.+.. +.... ......+++.+++.++..+.+...
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TI-rSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTI-LSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHH-HhhceeeeCCCCCHHHHHHHHHHc
Confidence 45557899999865 345566666655567787777776654 33322 222347999999999998888654
No 200
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.82 E-value=0.0042 Score=62.71 Aligned_cols=113 Identities=25% Similarity=0.362 Sum_probs=52.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH-H-ccccceeEEEEechhhhcc----cCCHHHHH----HHHHHHHhhccCcccccccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDL-I-SHEFDGSTFLANVREKSEK----EGSVVSLQ----KQLLSDLLKLADISIWNVDD 70 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~-~-~~~f~~~~~~~~~~~~~~~----~~~~~~l~----~~ll~~l~~~~~~~~~~~~~ 70 (1046)
+|.+.|++|.|||.||.+.+-+ + ..+|+..++....-+..+. ++++.+-. .-+...+..-. ....
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~-----~~~~ 95 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELF-----GKEK 95 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS------TTC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHh-----ChHh
Confidence 4789999999999999877743 3 4667777776644332222 11111111 11111111100 0111
Q ss_pred hHHHHH---------HhhcCC---eEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCChh
Q 001603 71 GINIIG---------SRLRQK---KVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQ 121 (1046)
Q Consensus 71 ~~~~i~---------~~L~~k---r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~ 121 (1046)
....+. .+++++ .-+||+|++.+. +++..+... .+.|||||++--..+
T Consensus 96 ~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~Q 157 (205)
T PF02562_consen 96 LEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPSQ 157 (205)
T ss_dssp HHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE----
T ss_pred HHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCcee
Confidence 111111 233443 468999999764 677777665 578999999877654
No 201
>PTZ00202 tuzin; Provisional
Probab=96.81 E-value=0.013 Score=64.75 Aligned_cols=137 Identities=17% Similarity=0.187 Sum_probs=81.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh-
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL- 79 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L- 79 (1046)
+++|.|++|+|||||++.+..... ...++.+.+ + ..++++.++.+|+..... .-.+..+.|.+.+
T Consensus 288 ivvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr------g-~eElLr~LL~ALGV~p~~---~k~dLLrqIqeaLl 353 (550)
T PTZ00202 288 IVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR------G-TEDTLRSVVKALGVPNVE---ACGDLLDFISEACR 353 (550)
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC------C-HHHHHHHHHHHcCCCCcc---cHHHHHHHHHHHHH
Confidence 478999999999999999987553 235666544 2 678999999999853222 1123444444443
Q ss_pred ----c-CCeEEEEEe--cCCChHH-HHHHhhccCCCCCCCEEEEEeCChhhHHHh-cCCCcceEecCCCChHHHHHHHHH
Q 001603 80 ----R-QKKVLLVID--DVADVEQ-LQNLARKRDWFGPGSKIVITTRDKQLLVAH-EVDEEHIYNLEVLSNDEALQLFSM 150 (1046)
Q Consensus 80 ----~-~kr~LlVlD--dv~~~~~-~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~-~~~~~~~~~l~~L~~~ea~~Lf~~ 150 (1046)
. +++.+||+- +-++..- ..+.. .+.....-+.|++----+.+-... ....-..|-++.++.++|.++-.+
T Consensus 354 ~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h 432 (550)
T PTZ00202 354 RAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQH 432 (550)
T ss_pred HHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhh
Confidence 2 677777763 2222221 11111 111123446777765554432221 112223799999999999988765
Q ss_pred hh
Q 001603 151 KA 152 (1046)
Q Consensus 151 ~a 152 (1046)
..
T Consensus 433 ~~ 434 (550)
T PTZ00202 433 AI 434 (550)
T ss_pred cc
Confidence 53
No 202
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.79 E-value=0.0092 Score=61.58 Aligned_cols=149 Identities=21% Similarity=0.233 Sum_probs=83.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
|.++|++|.||||||..+++++...+... ....-++++++..++ .. |+.
T Consensus 55 vLl~GPPGlGKTTLA~IIA~Emgvn~k~t-----sGp~leK~gDlaaiL----t~----------------------Le~ 103 (332)
T COG2255 55 VLLFGPPGLGKTTLAHIIANELGVNLKIT-----SGPALEKPGDLAAIL----TN----------------------LEE 103 (332)
T ss_pred EEeeCCCCCcHHHHHHHHHHHhcCCeEec-----ccccccChhhHHHHH----hc----------------------CCc
Confidence 57899999999999999999876643311 111122222222211 11 222
Q ss_pred CeEEEEEecCCChH-HHHHHh-hccCC--------CCCCCEE-----------EEEeCChhhHHHhcCCCcceEecCCCC
Q 001603 82 KKVLLVIDDVADVE-QLQNLA-RKRDW--------FGPGSKI-----------VITTRDKQLLVAHEVDEEHIYNLEVLS 140 (1046)
Q Consensus 82 kr~LlVlDdv~~~~-~~~~l~-~~~~~--------~~~gs~I-----------iiTTR~~~~~~~~~~~~~~~~~l~~L~ 140 (1046)
.- .+.+|.+.... ..++++ +...+ .++++|. =.|||.-.+.....-.-..+.+++-.+
T Consensus 104 ~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~ 182 (332)
T COG2255 104 GD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYT 182 (332)
T ss_pred CC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCC
Confidence 22 44567765431 111111 11111 1344443 358887654333221112278999999
Q ss_pred hHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHh
Q 001603 141 NDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLG 184 (1046)
Q Consensus 141 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~ 184 (1046)
.+|-.+...+.|..-+ .+-.++.+.+|+++..|-|--..-+-
T Consensus 183 ~~eL~~Iv~r~a~~l~--i~i~~~~a~eIA~rSRGTPRIAnRLL 224 (332)
T COG2255 183 VEELEEIVKRSAKILG--IEIDEEAALEIARRSRGTPRIANRLL 224 (332)
T ss_pred HHHHHHHHHHHHHHhC--CCCChHHHHHHHHhccCCcHHHHHHH
Confidence 9999999988874322 22334668899999999996544443
No 203
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.78 E-value=0.03 Score=61.39 Aligned_cols=96 Identities=18% Similarity=0.158 Sum_probs=60.5
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEE-EEeCChhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIV-ITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Ii-iTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++-++|+|+++.. .....|+..+.... .+.+| +|+....+..... .....+++.+++.++..+.+........
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~-SRcq~i~f~~l~~~~~~~~L~~~~~~~~- 199 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIV-SRCQIIPFYRLSDEQLEQVLKRLGDEEI- 199 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHH-hhceEEecCCCCHHHHHHHHHHhhcccc-
Confidence 56678999999865 33445555444334 44555 4444444444433 2234899999999999999987652211
Q ss_pred CCchHHHHHHHHHHHhCCCchHHHHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLALTVL 183 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal~~~ 183 (1046)
.......++..++|.|..+..+
T Consensus 200 ----~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 200 ----LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred ----chhHHHHHHHHcCCCHHHHHHH
Confidence 1111357899999999766543
No 204
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.77 E-value=0.00089 Score=68.28 Aligned_cols=85 Identities=29% Similarity=0.294 Sum_probs=56.8
Q ss_pred CccCCCCCCEEecCCC--CCCCCCCcccccCcCCCCeeeCCCCCCcc---cchhhhhccccCeeccccccccccC-----
Q 001603 717 SLSGLHSLSKLDLSDC--GLGEGAIPNDIGNLCSLKQLNLSQNNFVT---LPASINSLFNLGQLDLEDCKRLQSM----- 786 (1046)
Q Consensus 717 ~l~~l~~L~~L~Ls~n--~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~---lp~~i~~l~~L~~L~L~~c~~l~~i----- 786 (1046)
.+..+++|+.|.+|+| .+ .+.++.....+|+|++|+|++|++.. ++ .+..+.+|..|++.+|.-.+.-
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~-~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~ 137 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRV-SGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREK 137 (260)
T ss_pred cCCCcchhhhhcccCCcccc-cccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccccccHHHH
Confidence 3556778888888888 54 34444445566899999999998763 33 4677788888999888655511
Q ss_pred -CCCCCCCceeecCCCcc
Q 001603 787 -PQLPSNLYEVQVNGCAS 803 (1046)
Q Consensus 787 -p~lp~~L~~L~~~~C~~ 803 (1046)
-.+.++|+.|+-.++..
T Consensus 138 vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 138 VFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred HHHHhhhhccccccccCC
Confidence 12445666666555443
No 205
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.012 Score=65.57 Aligned_cols=124 Identities=18% Similarity=0.205 Sum_probs=75.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHH----H
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIG----S 77 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~----~ 77 (1046)
|.+.|++|.|||+||..++. ...|+.+-.++ ..+.-+ .+.......|+ +
T Consensus 541 vLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiS----pe~miG---------------------~sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 541 VLLEGPPGSGKTALAAKIAL--SSDFPFVKIIS----PEDMIG---------------------LSESAKCAHIKKIFED 593 (744)
T ss_pred EEEecCCCCChHHHHHHHHh--hcCCCeEEEeC----hHHccC---------------------ccHHHHHHHHHHHHHH
Confidence 57899999999999998876 46788655544 111111 11122222333 3
Q ss_pred hhcCCeEEEEEecCCChHHHHHHhhc------------cCCC-CCCCE--EEEEeCChhhHHHhcCCC--cceEecCCCC
Q 001603 78 RLRQKKVLLVIDDVADVEQLQNLARK------------RDWF-GPGSK--IVITTRDKQLLVAHEVDE--EHIYNLEVLS 140 (1046)
Q Consensus 78 ~L~~kr~LlVlDdv~~~~~~~~l~~~------------~~~~-~~gs~--IiiTTR~~~~~~~~~~~~--~~~~~l~~L~ 140 (1046)
..+..--.||+||++..-+|-.+.+. +... .+|-| |+-||..+.++..+++.. ...|.|+.++
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 34566778999999876554333322 2211 23444 455777778888776422 1379999998
Q ss_pred h-HHHHHHHHHhh
Q 001603 141 N-DEALQLFSMKA 152 (1046)
Q Consensus 141 ~-~ea~~Lf~~~a 152 (1046)
. ++..+.++..-
T Consensus 674 ~~~~~~~vl~~~n 686 (744)
T KOG0741|consen 674 TGEQLLEVLEELN 686 (744)
T ss_pred chHHHHHHHHHcc
Confidence 8 77777776543
No 206
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.74 E-value=0.026 Score=59.91 Aligned_cols=176 Identities=17% Similarity=0.091 Sum_probs=95.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccce------eEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDG------STFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINII 75 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~------~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i 75 (1046)
+.|+|.+|.|||++++++.......++. ++.+. ....++ ...+...++.+++...... .........+
T Consensus 64 lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~-~~~~Y~~IL~~lgaP~~~~-~~~~~~~~~~ 137 (302)
T PF05621_consen 64 LLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPD-ERRFYSAILEALGAPYRPR-DRVAKLEQQV 137 (302)
T ss_pred eEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCC-hHHHHHHHHHHhCcccCCC-CCHHHHHHHH
Confidence 5799999999999999999865444332 22222 233444 8899999999998544321 3333444444
Q ss_pred HHhhcC-CeEEEEEecCCCh------HH--HHHHhhccCCCCCCCEEEEEeCChhhHHHhc---CCCcceEecCCCChHH
Q 001603 76 GSRLRQ-KKVLLVIDDVADV------EQ--LQNLARKRDWFGPGSKIVITTRDKQLLVAHE---VDEEHIYNLEVLSNDE 143 (1046)
Q Consensus 76 ~~~L~~-kr~LlVlDdv~~~------~~--~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~---~~~~~~~~l~~L~~~e 143 (1046)
...++. +-=+||+|++.+. +| .-.....+...-.-+-|.|-|++.--+.... ......+.++....++
T Consensus 138 ~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ 217 (302)
T PF05621_consen 138 LRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDE 217 (302)
T ss_pred HHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCc
Confidence 455542 4448899999763 11 1112222211123455666666543221110 0011256666665544
Q ss_pred -HHHHHHHhhcC---CCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 001603 144 -ALQLFSMKAFK---TRQPMGEYVELSKRVLKYAGGLPLALTVL 183 (1046)
Q Consensus 144 -a~~Lf~~~a~~---~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 183 (1046)
...|+...... .....-...+++..|...++|+.=-+..+
T Consensus 218 ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 218 EFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 34444322211 11111233578899999999987555433
No 207
>PRK04132 replication factor C small subunit; Provisional
Probab=96.74 E-value=0.018 Score=70.59 Aligned_cols=153 Identities=13% Similarity=0.123 Sum_probs=89.8
Q ss_pred CCCCcHHHHHHHHHHHHc-cccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcCCeEE
Q 001603 7 MGGLGKTTLARVAYDLIS-HEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVL 85 (1046)
Q Consensus 7 ~gGiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~kr~L 85 (1046)
|.|+||||+|.++++++- +.+.....-.|. ++..+ +.. .++++.+....... -..+.-+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNA---Sd~rg-id~-IR~iIk~~a~~~~~---------------~~~~~KV 633 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNA---SDERG-INV-IREKVKEFARTKPI---------------GGASFKI 633 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeC---CCccc-HHH-HHHHHHHHHhcCCc---------------CCCCCEE
Confidence 789999999999999762 223222222221 22222 333 33333333211110 0124579
Q ss_pred EEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCChhh-HHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCCCCchH
Q 001603 86 LVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQL-LVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEY 162 (1046)
Q Consensus 86 lVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~ 162 (1046)
+|||+++.. ++...|...........++|.+|.+..- ..... .....+++++++.++-.+.+.+.+....-. -.
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIr-SRC~~i~F~~ls~~~i~~~L~~I~~~Egi~--i~ 710 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ-SRCAIFRFRPLRDEDIAKRLRYIAENEGLE--LT 710 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHh-hhceEEeCCCCCHHHHHHHHHHHHHhcCCC--CC
Confidence 999999976 3555666655545567777776666543 22222 223489999999999888877765432211 12
Q ss_pred HHHHHHHHHHhCCCchHHHH
Q 001603 163 VELSKRVLKYAGGLPLALTV 182 (1046)
Q Consensus 163 ~~~~~~i~~~~~GlPLal~~ 182 (1046)
.+....|++.++|.+.....
T Consensus 711 ~e~L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 711 EEGLQAILYIAEGDMRRAIN 730 (846)
T ss_pred HHHHHHHHHHcCCCHHHHHH
Confidence 35678899999998855433
No 208
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.71 E-value=0.0053 Score=60.64 Aligned_cols=34 Identities=26% Similarity=0.273 Sum_probs=27.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
++.|+|.+|+||||+|..+......+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 5789999999999999999887765444555655
No 209
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.021 Score=66.06 Aligned_cols=159 Identities=18% Similarity=0.189 Sum_probs=80.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccc-eeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFD-GSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLR 80 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 80 (1046)
|-|.|+.|+|||+||+++++.+...-. .+.++++ .. -....+..+|+.+- ..+.+.+.
T Consensus 434 Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~C-s~--l~~~~~e~iQk~l~------------------~vfse~~~ 492 (952)
T KOG0735|consen 434 ILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSC-ST--LDGSSLEKIQKFLN------------------NVFSEALW 492 (952)
T ss_pred EEEeCCCCCCHhHHHHHHHHHhccccceEEEEEec-hh--ccchhHHHHHHHHH------------------HHHHHHHh
Confidence 679999999999999999998764322 2233332 11 11112444444332 22344556
Q ss_pred CCeEEEEEecCCChH--------HH-------HHHh-hccCCC-CCCCE--EEEEeCChhhHHHhcCCC---cceEecCC
Q 001603 81 QKKVLLVIDDVADVE--------QL-------QNLA-RKRDWF-GPGSK--IVITTRDKQLLVAHEVDE---EHIYNLEV 138 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~~--------~~-------~~l~-~~~~~~-~~gs~--IiiTTR~~~~~~~~~~~~---~~~~~l~~ 138 (1046)
..+-+|||||++-.- || ..+. .....+ ..+.+ +|.|.....-....-+.. ..+..++.
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 788899999996421 11 1111 111111 23344 334443332111111111 12688899
Q ss_pred CChHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC-CchHHHHH
Q 001603 139 LSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGG-LPLALTVL 183 (1046)
Q Consensus 139 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G-lPLal~~~ 183 (1046)
++..+-.++++...-+.. . ....+...-+..+|+| .|.-++++
T Consensus 573 p~~~~R~~IL~~~~s~~~-~-~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKNL-S-DITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred cchhHHHHHHHHHHHhhh-h-hhhhHHHHHHHHhcCCccchhHHHH
Confidence 998888877765542222 1 1111222236666766 34444444
No 210
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.66 E-value=0.00036 Score=82.95 Aligned_cols=110 Identities=32% Similarity=0.447 Sum_probs=54.4
Q ss_pred CCCCcEEecCCCCCCcc--chhhhhccCcCcEEeccCC-CCCCcCC----ccccCCcccceeeccCcc-ccccC--cccc
Q 001603 533 LTGLVLLNLKDCKNLKS--LSHTLRRLQCLKNLTLSGC-SKLKKFP----ESLGSMKDLMELFLDGTS-IAEVP--SSIE 602 (1046)
Q Consensus 533 l~~L~~L~L~~~~~~~~--l~~~l~~l~~L~~L~L~~~-~~~~~~p----~~~~~l~~L~~L~L~~~~-i~~lp--~~l~ 602 (1046)
++.|+.|.+.+|..... +-.....+++|+.|++++| ......+ .....+.+|+.|+++.+. +++.- ....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666666655554 3455566667777776663 2211111 122334556666665554 33211 1112
Q ss_pred cCCCCCEEecCCCCCC-C-ccCCccCCCCCCCEEeccCCCCC
Q 001603 603 LLTGLQLLNLNNCSNL-V-RLPSCINGLRSLKTLNLSGCSKL 642 (1046)
Q Consensus 603 ~l~~L~~L~L~~~~~~-~-~l~~~~~~l~~L~~L~Ls~c~~l 642 (1046)
.+++|+.|.+.+|... . .+-.....+++|++|++++|...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 3566666666655531 1 12222334556666666666554
No 211
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.66 E-value=0.019 Score=61.56 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISH 25 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~ 25 (1046)
|.|+|++|+|||++|++++.....
T Consensus 24 vLL~G~~GtGKT~lA~~la~~lg~ 47 (262)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVARKRDR 47 (262)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC
Confidence 678999999999999999986543
No 212
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.60 E-value=0.0058 Score=61.31 Aligned_cols=34 Identities=29% Similarity=0.592 Sum_probs=30.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
+|.|.|+.|.||||+|+.+++.+..++...+++.
T Consensus 9 ~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 9 VIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 5899999999999999999999887777777764
No 213
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.60 E-value=0.0015 Score=60.93 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=21.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
+|+|.|++|+||||+|+++++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 214
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.59 E-value=0.017 Score=71.76 Aligned_cols=148 Identities=19% Similarity=0.190 Sum_probs=74.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcc-cCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEK-EGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLR 80 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 80 (1046)
|.++|++|+||||||+++++.....| +.+. ..+.... .+.... .....+.....
T Consensus 215 iLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~~~g~~~~---------------------~l~~lf~~a~~ 269 (733)
T TIGR01243 215 VLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSKYYGESEE---------------------RLREIFKEAEE 269 (733)
T ss_pred EEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhcccccHHHH---------------------HHHHHHHHHHh
Confidence 67999999999999999998765432 2222 1111100 000000 11112222234
Q ss_pred CCeEEEEEecCCChH-------------HHHHHhhccCCC-CCCCEEEE-EeCChh-hHHHh----cCCCcceEecCCCC
Q 001603 81 QKKVLLVIDDVADVE-------------QLQNLARKRDWF-GPGSKIVI-TTRDKQ-LLVAH----EVDEEHIYNLEVLS 140 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~~-------------~~~~l~~~~~~~-~~gs~Iii-TTR~~~-~~~~~----~~~~~~~~~l~~L~ 140 (1046)
..+.+|+||+++... ....+....... ..+..++| ||.... +.... ..+ ..+.+...+
T Consensus 270 ~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd--~~i~i~~P~ 347 (733)
T TIGR01243 270 NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFD--REIVIRVPD 347 (733)
T ss_pred cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhcc--EEEEeCCcC
Confidence 566789999986421 122233222211 23344455 443322 11111 122 368888889
Q ss_pred hHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchH
Q 001603 141 NDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLA 179 (1046)
Q Consensus 141 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 179 (1046)
.++..+++..+.-..... ++ .....+++.+.|.--|
T Consensus 348 ~~~R~~Il~~~~~~~~l~-~d--~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 348 KRARKEILKVHTRNMPLA-ED--VDLDKLAEVTHGFVGA 383 (733)
T ss_pred HHHHHHHHHHHhcCCCCc-cc--cCHHHHHHhCCCCCHH
Confidence 999888888654222111 11 1245677777776543
No 215
>PRK04296 thymidine kinase; Provisional
Probab=96.55 E-value=0.0056 Score=62.07 Aligned_cols=111 Identities=18% Similarity=0.131 Sum_probs=59.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccC-cccccccchHHHHHHhh
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLAD-ISIWNVDDGINIIGSRL 79 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~-~~~~~~~~~~~~i~~~L 79 (1046)
++.|+|..|.||||+|..++.+...+-..+.++... .....+ ...++++++.... .......+....+++ .
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~--~d~~~~-----~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA--IDDRYG-----EGKVVSRIGLSREAIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc--cccccc-----CCcEecCCCCcccceEeCChHHHHHHHHh-h
Confidence 467999999999999999888775543333333210 011111 1122333321100 001122233333333 2
Q ss_pred cCCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCChh
Q 001603 80 RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQ 121 (1046)
Q Consensus 80 ~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~ 121 (1046)
.++.-+||+|.+.-. +++.++...+. ..|..||+|.++..
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 335568999999653 44555544422 46889999999843
No 216
>PRK08118 topology modulation protein; Reviewed
Probab=96.54 E-value=0.002 Score=63.76 Aligned_cols=31 Identities=32% Similarity=0.458 Sum_probs=24.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcc---ccceeEE
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISH---EFDGSTF 32 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~---~f~~~~~ 32 (1046)
|.|+|++|+||||||+++++.+.- +|+...|
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 789999999999999999997643 3454443
No 217
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.54 E-value=0.0028 Score=59.65 Aligned_cols=37 Identities=32% Similarity=0.457 Sum_probs=28.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccc-cceeEEE-Eechh
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHE-FDGSTFL-ANVRE 38 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~-~~~~~ 38 (1046)
|+|.||+|+||||+++++.+.+++. |...-|+ .-+|+
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~ 46 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVRE 46 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeec
Confidence 7899999999999999999988776 6554443 33443
No 218
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.54 E-value=0.0024 Score=61.31 Aligned_cols=22 Identities=45% Similarity=0.492 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
|.|+|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 219
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.014 Score=67.29 Aligned_cols=128 Identities=20% Similarity=0.227 Sum_probs=71.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechh--hhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVRE--KSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL 79 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~--~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 79 (1046)
|..+|++|+|||++|+++++.-.-.| +..-.. .+.-.+.-+...++++++. =
T Consensus 471 VLlyGPPGC~KT~lAkalAne~~~nF-----lsvkgpEL~sk~vGeSEr~ir~iF~kA---------------------R 524 (693)
T KOG0730|consen 471 VLLYGPPGCGKTLLAKALANEAGMNF-----LSVKGPELFSKYVGESERAIREVFRKA---------------------R 524 (693)
T ss_pred EEEECCCCcchHHHHHHHhhhhcCCe-----eeccCHHHHHHhcCchHHHHHHHHHHH---------------------h
Confidence 67899999999999999999655543 331000 0000111112222222211 1
Q ss_pred cCCeEEEEEecCCChH-------------HHHHHhhccCCCCCCCEE-EE--EeCChhhHHHh----cCCCcceEecCCC
Q 001603 80 RQKKVLLVIDDVADVE-------------QLQNLARKRDWFGPGSKI-VI--TTRDKQLLVAH----EVDEEHIYNLEVL 139 (1046)
Q Consensus 80 ~~kr~LlVlDdv~~~~-------------~~~~l~~~~~~~~~gs~I-ii--TTR~~~~~~~~----~~~~~~~~~l~~L 139 (1046)
+--+.+|.||.+|... .+..|+...+-......| || |-|...+-.+. ..+. ++-|+.-
T Consensus 525 ~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~--iiyVplP 602 (693)
T KOG0730|consen 525 QVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDR--IIYVPLP 602 (693)
T ss_pred hcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccce--eEeecCc
Confidence 2345788888886531 244555555533333333 33 33443332222 1343 8888888
Q ss_pred ChHHHHHHHHHhhcCCCC
Q 001603 140 SNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 140 ~~~ea~~Lf~~~a~~~~~ 157 (1046)
+.+...++|+.++-+..-
T Consensus 603 D~~aR~~Ilk~~~kkmp~ 620 (693)
T KOG0730|consen 603 DLEARLEILKQCAKKMPF 620 (693)
T ss_pred cHHHHHHHHHHHHhcCCC
Confidence 889999999999865543
No 220
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.47 E-value=0.0018 Score=62.20 Aligned_cols=34 Identities=29% Similarity=0.253 Sum_probs=28.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
||.|.|.+|.||||||+++.+++.+.-..+.+++
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 5889999999999999999999887766666665
No 221
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.47 E-value=0.022 Score=69.09 Aligned_cols=129 Identities=14% Similarity=0.158 Sum_probs=69.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
|.|+|++|+||||+|+.++......|- .+. . .++..... . .........+......
T Consensus 188 ill~G~~G~GKt~~~~~~a~~~~~~f~---~is-~----------~~~~~~~~-g---------~~~~~~~~~f~~a~~~ 243 (644)
T PRK10733 188 VLMVGPPGTGKTLLAKAIAGEAKVPFF---TIS-G----------SDFVEMFV-G---------VGASRVRDMFEQAKKA 243 (644)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCEE---EEe-h----------HHhHHhhh-c---------ccHHHHHHHHHHHHhc
Confidence 679999999999999999887654431 111 1 11111000 0 0001111122222335
Q ss_pred CeEEEEEecCCChH----------------HHHHHhhccCCCC--CCCEEEEEeCChhhHHHhcC---CCcceEecCCCC
Q 001603 82 KKVLLVIDDVADVE----------------QLQNLARKRDWFG--PGSKIVITTRDKQLLVAHEV---DEEHIYNLEVLS 140 (1046)
Q Consensus 82 kr~LlVlDdv~~~~----------------~~~~l~~~~~~~~--~gs~IiiTTR~~~~~~~~~~---~~~~~~~l~~L~ 140 (1046)
.+.+|+||++|... .+..+......+. .+.-+|.||...+.+...-. .-.+.+.+...+
T Consensus 244 ~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 67899999997641 1233333333222 23445556665543322111 112378899999
Q ss_pred hHHHHHHHHHhhcC
Q 001603 141 NDEALQLFSMKAFK 154 (1046)
Q Consensus 141 ~~ea~~Lf~~~a~~ 154 (1046)
.++..+++..+..+
T Consensus 324 ~~~R~~Il~~~~~~ 337 (644)
T PRK10733 324 VRGREQILKVHMRR 337 (644)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999998887744
No 222
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.44 E-value=0.01 Score=60.73 Aligned_cols=108 Identities=17% Similarity=0.217 Sum_probs=62.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEE-echhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA-NVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL 79 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 79 (1046)
+|.|+|+.|.||||+++++...+.......++.. +-.+... .. . ..+.. ..... .+.....+.++..+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~-~~-~----~~~i~----q~~vg-~~~~~~~~~i~~aL 71 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVH-ES-K----RSLIN----QREVG-LDTLSFENALKAAL 71 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccc-cC-c----cceee----ecccC-CCccCHHHHHHHHh
Confidence 4889999999999999998887765444444432 2111100 00 0 00000 00110 12234456777888
Q ss_pred cCCeEEEEEecCCChHHHHHHhhccCCCCCCCEEEEEeCChhh
Q 001603 80 RQKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQL 122 (1046)
Q Consensus 80 ~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~ 122 (1046)
+..+=.+++|++.+.+.+....... ..|..++.|+-....
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 7778899999998887766544432 245567777665543
No 223
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.41 E-value=0.013 Score=69.75 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
+++|+|++|+||||+++.++..+.
T Consensus 112 illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999997553
No 224
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.40 E-value=0.013 Score=60.79 Aligned_cols=145 Identities=19% Similarity=0.185 Sum_probs=77.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEec--hhhhcccCCHHHHHHHHHHHHhhcc------CcccccccchH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANV--REKSEKEGSVVSLQKQLLSDLLKLA------DISIWNVDDGI 72 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~~~l~~~ll~~l~~~~------~~~~~~~~~~~ 72 (1046)
++||+|.+|+||||+|+.+..-..-. .+.+++..- .... ... ..+...+++..++... ......-+...
T Consensus 41 ~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~-~~~-~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR 117 (268)
T COG4608 41 TLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLS-KEE-RRERVLELLEKVGLPEEFLYRYPHELSGGQRQR 117 (268)
T ss_pred EEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcc-hhH-HHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence 47999999999999999999865543 334444321 1111 111 3344556666655211 11111222223
Q ss_pred HHHHHhhcCCeEEEEEecCCCh------HHHHHHhhccCCCCCCCEEEEEeCChhhHHHhcCCCcceEecCCCChHHHHH
Q 001603 73 NIIGSRLRQKKVLLVIDDVADV------EQLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQ 146 (1046)
Q Consensus 73 ~~i~~~L~~kr~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~ 146 (1046)
-.|.+.|.-++-++|.|.--.. .|.-.+...+. ...|-..+..|-|-.+.....-.....|.=+-.+...+.+
T Consensus 118 i~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~ 196 (268)
T COG4608 118 IGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEE 196 (268)
T ss_pred HHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHH
Confidence 4577888889999999986432 33444444333 1245566667777666544332211123333334444555
Q ss_pred HHH
Q 001603 147 LFS 149 (1046)
Q Consensus 147 Lf~ 149 (1046)
+|.
T Consensus 197 ~~~ 199 (268)
T COG4608 197 VFS 199 (268)
T ss_pred Hhh
Confidence 554
No 225
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.39 E-value=0.016 Score=57.23 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=47.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLR 80 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 80 (1046)
++.|.|.+|.|||++|.++... ......++.... ..+ .++++.+.......... +...+....+.+.+.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~----~~d--~em~~rI~~H~~~R~~~--w~t~E~~~~l~~~l~ 69 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIATAE----AFD--DEMAERIARHRKRRPAH--WRTIETPRDLVSALK 69 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccC----cCC--HHHHHHHHHHHHhCCCC--ceEeecHHHHHHHHH
Confidence 5789999999999999988765 223456665221 122 24455544433222222 455555556666663
Q ss_pred C--CeEEEEEecC
Q 001603 81 Q--KKVLLVIDDV 91 (1046)
Q Consensus 81 ~--kr~LlVlDdv 91 (1046)
. +.-.+++|.+
T Consensus 70 ~~~~~~~VLIDcl 82 (169)
T cd00544 70 ELDPGDVVLIDCL 82 (169)
T ss_pred hcCCCCEEEEEcH
Confidence 2 2337899997
No 226
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.38 E-value=0.022 Score=55.97 Aligned_cols=59 Identities=12% Similarity=0.186 Sum_probs=34.6
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCChhhHHHhcCCCcceEecCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEVL 139 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L 139 (1046)
+++=++||||++.. +....|+..+.....++++|++|++..-....-......+.++++
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE---
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCC
Confidence 45668899999864 445666666555567899998888776322222222235666655
No 227
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.36 E-value=0.034 Score=70.08 Aligned_cols=130 Identities=11% Similarity=0.098 Sum_probs=66.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcccc------ceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEF------DGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINII 75 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i 75 (1046)
+.++|++|+|||++|+.++.++...+ ...+|..++.. +... . ... .+.......+
T Consensus 197 ~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~----------l~a~----~--~~~---g~~e~~l~~~ 257 (852)
T TIGR03346 197 PVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA----------LIAG----A--KYR---GEFEERLKAV 257 (852)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH----------Hhhc----c--hhh---hhHHHHHHHH
Confidence 46899999999999999999875432 22233322111 1100 0 000 1111112222
Q ss_pred HHhh--cCCeEEEEEecCCChH---------HHHHHhhccCCCCCC-CEEEEEeCChhhHHHhcC-----CCcceEecCC
Q 001603 76 GSRL--RQKKVLLVIDDVADVE---------QLQNLARKRDWFGPG-SKIVITTRDKQLLVAHEV-----DEEHIYNLEV 138 (1046)
Q Consensus 76 ~~~L--~~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~g-s~IiiTTR~~~~~~~~~~-----~~~~~~~l~~ 138 (1046)
.+.+ .+++++|++|+++... +...++.+.. ..| -++|-+|.....-..... ..-..+.|..
T Consensus 258 l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~ 335 (852)
T TIGR03346 258 LNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDE 335 (852)
T ss_pred HHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCC
Confidence 2222 2468999999997442 1222222221 233 345545544432111100 1113688999
Q ss_pred CChHHHHHHHHHhh
Q 001603 139 LSNDEALQLFSMKA 152 (1046)
Q Consensus 139 L~~~ea~~Lf~~~a 152 (1046)
.+.++..+++....
T Consensus 336 p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 336 PTVEDTISILRGLK 349 (852)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999887654
No 228
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.33 E-value=0.029 Score=70.39 Aligned_cols=129 Identities=16% Similarity=0.132 Sum_probs=65.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccc-c-----ceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHE-F-----DGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINII 75 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~-f-----~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i 75 (1046)
+.++|++|+|||++|+.++.++... - ...+|..+... ++. .... ..+..+....+
T Consensus 203 ~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~----------l~a--------g~~~-~ge~e~rl~~i 263 (821)
T CHL00095 203 PILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGL----------LLA--------GTKY-RGEFEERLKRI 263 (821)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHH----------Hhc--------cCCC-ccHHHHHHHHH
Confidence 4699999999999999999877532 1 12344332211 110 0000 01111122222
Q ss_pred HHhh-cCCeEEEEEecCCChH---------HHHHHhhccCCCCCC-CEEEEEeCChhhHHHhc-----CCCcceEecCCC
Q 001603 76 GSRL-RQKKVLLVIDDVADVE---------QLQNLARKRDWFGPG-SKIVITTRDKQLLVAHE-----VDEEHIYNLEVL 139 (1046)
Q Consensus 76 ~~~L-~~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~g-s~IiiTTR~~~~~~~~~-----~~~~~~~~l~~L 139 (1046)
.+.+ ..++++|++|+++..- ....++.+.. ..| -++|.+|.......... ...-..++++..
T Consensus 264 ~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l--~rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep 341 (821)
T CHL00095 264 FDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPAL--ARGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEP 341 (821)
T ss_pred HHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHH--hCCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCC
Confidence 2222 3568999999995321 1222222211 223 45565555544311111 111136889999
Q ss_pred ChHHHHHHHHHh
Q 001603 140 SNDEALQLFSMK 151 (1046)
Q Consensus 140 ~~~ea~~Lf~~~ 151 (1046)
+.++...+++..
T Consensus 342 ~~~e~~aILr~l 353 (821)
T CHL00095 342 SVEETIEILFGL 353 (821)
T ss_pred CHHHHHHHHHHH
Confidence 999988887643
No 229
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.32 E-value=0.03 Score=55.81 Aligned_cols=24 Identities=29% Similarity=0.133 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISH 25 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~ 25 (1046)
+.|.||+|+||||-+..+++.+-.
T Consensus 51 liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 51 LIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred eEeeCCCCCchhhHHHHHHHHHhC
Confidence 568999999999999998886543
No 230
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.24 E-value=0.034 Score=69.76 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISH 25 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~ 25 (1046)
+.++|.+|+||||+|+.++.++..
T Consensus 202 ~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 202 PVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred eEEECCCCCCHHHHHHHHHHHhhc
Confidence 568999999999999999998754
No 231
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.21 E-value=0.033 Score=56.30 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=21.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
||.|+|++|+||||+|+.+++++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998865
No 232
>PRK07261 topology modulation protein; Provisional
Probab=96.20 E-value=0.016 Score=57.66 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
|+|+|++|+||||||+++....
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998754
No 233
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.13 E-value=0.013 Score=65.99 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=25.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcc--ccceeEEEE
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISH--EFDGSTFLA 34 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~--~f~~~~~~~ 34 (1046)
|.++|++|+|||++|+++++.+.. .|..+.|+.
T Consensus 197 iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 197 IILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 678999999999999999987754 344444544
No 234
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.11 E-value=0.21 Score=55.72 Aligned_cols=58 Identities=17% Similarity=0.261 Sum_probs=37.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccc--cceeEEEEechhhhcccCCHHHHHHHHHHHHh
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHE--FDGSTFLANVREKSEKEGSVVSLQKQLLSDLL 58 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 58 (1046)
+|||.|.=|.||||+.+.+.+.+... -...+...+.+...........+..++..++.
T Consensus 22 ~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~ 81 (325)
T PF07693_consen 22 VIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLE 81 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHH
Confidence 58999999999999999999988776 22333333444444433334455555555443
No 235
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.11 E-value=0.064 Score=67.34 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISH 25 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~ 25 (1046)
+.++|+.|+|||++|+++++.+..
T Consensus 601 ~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 601 FLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999986643
No 236
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.10 E-value=0.027 Score=70.19 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=23.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHcccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEF 27 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f 27 (1046)
++.++|++|+|||++|+.+++.+...|
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 367899999999999999999876554
No 237
>PRK06762 hypothetical protein; Provisional
Probab=96.09 E-value=0.031 Score=55.40 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
+|+|.|+.|+||||+|+++.+.+
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 238
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.029 Score=58.86 Aligned_cols=34 Identities=18% Similarity=0.376 Sum_probs=25.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHH----ccccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLI----SHEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~----~~~f~~~~~~~ 34 (1046)
+|.+.|++|.|||+|.+++++++ .+.|.....+.
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 47899999999999999999965 34455444443
No 239
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.04 E-value=0.04 Score=53.40 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=22.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
||.|+|.+|.||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 240
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.98 E-value=0.0086 Score=57.69 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=20.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999987543
No 241
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.97 E-value=0.021 Score=58.01 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=25.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
||.++|+.|+||||.+.+++.+.+.+-..+.++.
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 5899999999999999888886665533344444
No 242
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.047 Score=62.16 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
|.++|++|+|||.||++++.+..--
T Consensus 226 vLlHGPPGCGKT~lA~AiAgel~vP 250 (802)
T KOG0733|consen 226 VLLHGPPGCGKTSLANAIAGELGVP 250 (802)
T ss_pred eeeeCCCCccHHHHHHHHhhhcCCc
Confidence 5789999999999999999876543
No 243
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.035 Score=64.73 Aligned_cols=136 Identities=21% Similarity=0.282 Sum_probs=73.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccc-cccchHHHHHHhh
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIW-NVDDGINIIGSRL 79 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~-~~~~~~~~i~~~L 79 (1046)
+++++|++|||||+|++.+++.+...|-. +-+-.+|+.++-.| .....+. -+...++.+++ .
T Consensus 352 ILcLVGPPGVGKTSLgkSIA~al~RkfvR-~sLGGvrDEAEIRG---------------HRRTYIGamPGrIiQ~mkk-a 414 (782)
T COG0466 352 ILCLVGPPGVGKTSLGKSIAKALGRKFVR-ISLGGVRDEAEIRG---------------HRRTYIGAMPGKIIQGMKK-A 414 (782)
T ss_pred EEEEECCCCCCchhHHHHHHHHhCCCEEE-EecCccccHHHhcc---------------ccccccccCChHHHHHHHH-h
Confidence 57899999999999999999988877652 22333444332211 0000000 11122222222 2
Q ss_pred cCCeEEEEEecCCChH---------H-HHHHhhccC-CCC--------CCCEE-EEEeCChhh-HHHhcCCCcceEecCC
Q 001603 80 RQKKVLLVIDDVADVE---------Q-LQNLARKRD-WFG--------PGSKI-VITTRDKQL-LVAHEVDEEHIYNLEV 138 (1046)
Q Consensus 80 ~~kr~LlVlDdv~~~~---------~-~~~l~~~~~-~~~--------~gs~I-iiTTR~~~~-~~~~~~~~~~~~~l~~ 138 (1046)
+.+.=+++||.+|... . ++-|-+..+ .|. -=|.| .|||-+.-- ....-.+.-.++++.+
T Consensus 415 ~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsg 494 (782)
T COG0466 415 GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSG 494 (782)
T ss_pred CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecC
Confidence 4567799999998631 1 222222111 010 12444 466655321 1111122223899999
Q ss_pred CChHHHHHHHHHhhc
Q 001603 139 LSNDEALQLFSMKAF 153 (1046)
Q Consensus 139 L~~~ea~~Lf~~~a~ 153 (1046)
.+++|-.+.-.++..
T Consensus 495 Yt~~EKl~IAk~~Li 509 (782)
T COG0466 495 YTEDEKLEIAKRHLI 509 (782)
T ss_pred CChHHHHHHHHHhcc
Confidence 999998888777753
No 244
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.86 E-value=0.037 Score=53.83 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=37.4
Q ss_pred hHHHHHHhhcCCeEEEEEec----CCChHHHH--HHhhccCCCCCCCEEEEEeCChhhHHHhc
Q 001603 71 GINIIGSRLRQKKVLLVIDD----VADVEQLQ--NLARKRDWFGPGSKIVITTRDKQLLVAHE 127 (1046)
Q Consensus 71 ~~~~i~~~L~~kr~LlVlDd----v~~~~~~~--~l~~~~~~~~~gs~IiiTTR~~~~~~~~~ 127 (1046)
..-.|.+.+-+++-+++-|. +|....|+ .+...++ ..|..|||+|-+.++...+.
T Consensus 144 QRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 144 QRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhcc
Confidence 34457777788999999886 44443343 2333333 57999999999998876653
No 245
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.85 E-value=0.043 Score=54.81 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
++.+.|++|+||||+++.++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 57899999999999999999877654
No 246
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.85 E-value=0.054 Score=62.41 Aligned_cols=95 Identities=13% Similarity=0.107 Sum_probs=63.4
Q ss_pred CCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCChhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCCC
Q 001603 81 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQP 158 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 158 (1046)
+|.=+.|+|+|.-. ..+..|+..+....+.-.-|..|++.+-...........|.++.++.++-...+...+-+..-.
T Consensus 118 ~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~ 197 (515)
T COG2812 118 GRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN 197 (515)
T ss_pred ccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCc
Confidence 56668889999754 5688888777655666666666666654333333444589999999998888888777544432
Q ss_pred CchHHHHHHHHHHHhCCCc
Q 001603 159 MGEYVELSKRVLKYAGGLP 177 (1046)
Q Consensus 159 ~~~~~~~~~~i~~~~~GlP 177 (1046)
...+....|++..+|..
T Consensus 198 --~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 198 --IEEDALSLIARAAEGSL 214 (515)
T ss_pred --cCHHHHHHHHHHcCCCh
Confidence 22355666777777744
No 247
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.042 Score=55.76 Aligned_cols=91 Identities=22% Similarity=0.406 Sum_probs=54.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh--
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL-- 79 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L-- 79 (1046)
|.++|++|.|||-+|++|+++- ..+|+..+... +.+ .-+.++.+++++.+
T Consensus 214 vllygppgtgktl~aravanrt-----dacfirvigse---------lvq--------------kyvgegarmvrelf~m 265 (435)
T KOG0729|consen 214 VLLYGPPGTGKTLCARAVANRT-----DACFIRVIGSE---------LVQ--------------KYVGEGARMVRELFEM 265 (435)
T ss_pred eEEeCCCCCchhHHHHHHhccc-----CceEEeehhHH---------HHH--------------HHhhhhHHHHHHHHHH
Confidence 5789999999999999999863 35777654321 111 11223444444443
Q ss_pred -c-CCeEEEEEecCCCh--------------H--HHHHHhhccCCCCCC--CEEEEEeCCh
Q 001603 80 -R-QKKVLLVIDDVADV--------------E--QLQNLARKRDWFGPG--SKIVITTRDK 120 (1046)
Q Consensus 80 -~-~kr~LlVlDdv~~~--------------~--~~~~l~~~~~~~~~g--s~IiiTTR~~ 120 (1046)
+ .|.++|.+|.++.. . ..-++...+.-|.+. -+|++.|.-.
T Consensus 266 artkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrp 326 (435)
T KOG0729|consen 266 ARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRP 326 (435)
T ss_pred hcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCC
Confidence 3 57789999998531 1 133445555544443 4677666443
No 248
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.82 E-value=0.011 Score=61.11 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=28.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
++.|+|++|+|||++|.+++.....+-..++|++
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4789999999999999998876655556678877
No 249
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.81 E-value=0.037 Score=67.75 Aligned_cols=130 Identities=18% Similarity=0.195 Sum_probs=66.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcccc------ceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEF------DGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINII 75 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i 75 (1046)
+.++|++|+|||++|+.+++++...- +..+|..+ ...+ +.. .. ...+.......+
T Consensus 210 ~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~----------~~~l----laG----~~-~~Ge~e~rl~~l 270 (758)
T PRK11034 210 PLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD----------IGSL----LAG----TK-YRGDFEKRFKAL 270 (758)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc----------HHHH----hcc----cc-hhhhHHHHHHHH
Confidence 56899999999999999998763321 12222111 1111 100 00 001222222223
Q ss_pred HHhh-cCCeEEEEEecCCCh----------HHHHHHhhccCCCCCC-CEEEEEeCChhhHHHhcC-----CCcceEecCC
Q 001603 76 GSRL-RQKKVLLVIDDVADV----------EQLQNLARKRDWFGPG-SKIVITTRDKQLLVAHEV-----DEEHIYNLEV 138 (1046)
Q Consensus 76 ~~~L-~~kr~LlVlDdv~~~----------~~~~~l~~~~~~~~~g-s~IiiTTR~~~~~~~~~~-----~~~~~~~l~~ 138 (1046)
.+.+ +.++.+|+||+++.. .+...+..+.. ..| -+||-+|........... ..-..++|+.
T Consensus 271 ~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L--~~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~e 348 (758)
T PRK11034 271 LKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--SSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITE 348 (758)
T ss_pred HHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH--hCCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCC
Confidence 2323 346789999999743 12222222221 233 344544443332111000 1113799999
Q ss_pred CChHHHHHHHHHhh
Q 001603 139 LSNDEALQLFSMKA 152 (1046)
Q Consensus 139 L~~~ea~~Lf~~~a 152 (1046)
++.+++.+++....
T Consensus 349 Ps~~~~~~IL~~~~ 362 (758)
T PRK11034 349 PSIEETVQIINGLK 362 (758)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999988654
No 250
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.77 E-value=0.0064 Score=62.21 Aligned_cols=85 Identities=24% Similarity=0.262 Sum_probs=50.4
Q ss_pred cCCCCCEEecCCC--CCCCccCCccCCCCCCCEEeccCCCCCC-CcCcccCCCCCCceeeccCccccCCC----cchhhc
Q 001603 603 LLTGLQLLNLNNC--SNLVRLPSCINGLRSLKTLNLSGCSKLQ-NVPETLGQVESLEELDISGTAIRRPP----SSIFVM 675 (1046)
Q Consensus 603 ~l~~L~~L~L~~~--~~~~~l~~~~~~l~~L~~L~Ls~c~~l~-~~~~~~~~l~~L~~L~Ls~n~l~~~p----~~~~~l 675 (1046)
.+++|+.|.++.| .....++.....+|+|++|++++|.+-. .--..+..+++|..|++.+|..+.+. ..+.-+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 4566777777766 4444455555555777777777765442 11122345667777777777766652 234456
Q ss_pred cCCceeecCCCC
Q 001603 676 NNLKTLSFSGCN 687 (1046)
Q Consensus 676 ~~L~~L~L~~~~ 687 (1046)
++|++|+-....
T Consensus 143 ~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 143 PSLKYLDGCDVD 154 (260)
T ss_pred hhhccccccccC
Confidence 777777655544
No 251
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.77 E-value=0.008 Score=56.61 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
|+|.|+.|+||||+|+++.+++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999875
No 252
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.75 E-value=0.014 Score=61.25 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=27.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
++.|+|.+|+|||++|.+++......-..++|+.
T Consensus 25 i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 25 ITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4689999999999999998876655556677776
No 253
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.75 E-value=0.0074 Score=61.59 Aligned_cols=26 Identities=38% Similarity=0.616 Sum_probs=23.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
||||.|.+|.||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999988654
No 254
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.63 E-value=0.085 Score=53.69 Aligned_cols=144 Identities=19% Similarity=0.253 Sum_probs=80.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh--
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL-- 79 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L-- 79 (1046)
|..+|++|.|||-+|++++++..-- ++.. . ..++. . ..+.++.++|++..
T Consensus 154 VLFyGppGTGKTm~Akalane~kvp-----~l~v-k--------at~li----G----------ehVGdgar~Ihely~r 205 (368)
T COG1223 154 VLFYGPPGTGKTMMAKALANEAKVP-----LLLV-K--------ATELI----G----------EHVGDGARRIHELYER 205 (368)
T ss_pred eEEECCCCccHHHHHHHHhcccCCc-----eEEe-c--------hHHHH----H----------HHhhhHHHHHHHHHHH
Confidence 5679999999999999999865432 2221 0 01111 1 11122333333322
Q ss_pred --cCCeEEEEEecCCCh--------------HHHHHHhhccCCC--CCCCEEEEEeCChhhHHH-hcCCCcceEecCCCC
Q 001603 80 --RQKKVLLVIDDVADV--------------EQLQNLARKRDWF--GPGSKIVITTRDKQLLVA-HEVDEEHIYNLEVLS 140 (1046)
Q Consensus 80 --~~kr~LlVlDdv~~~--------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~~~~~-~~~~~~~~~~l~~L~ 140 (1046)
+.-++++.+|.+|.. +...+|+..++-. +.|..-|-.|....++.. ....-..-++..--+
T Consensus 206 A~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~ 285 (368)
T COG1223 206 ARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPN 285 (368)
T ss_pred HHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCC
Confidence 357899999998753 2244555554422 345444555555444332 111112368888889
Q ss_pred hHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Q 001603 141 NDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGL 176 (1046)
Q Consensus 141 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 176 (1046)
++|-.+++..++-.-.-+.+.. .+.++.+.+|.
T Consensus 286 ~eEr~~ile~y~k~~Plpv~~~---~~~~~~~t~g~ 318 (368)
T COG1223 286 DEERLEILEYYAKKFPLPVDAD---LRYLAAKTKGM 318 (368)
T ss_pred hHHHHHHHHHHHHhCCCccccC---HHHHHHHhCCC
Confidence 9999999999985544332221 34455555553
No 255
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.61 E-value=0.038 Score=53.81 Aligned_cols=88 Identities=24% Similarity=0.322 Sum_probs=44.4
Q ss_pred EEcCCCCcHHHHHHHHHHHHccccceeEEEE---echhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhc
Q 001603 4 IWGMGGLGKTTLARVAYDLISHEFDGSTFLA---NVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLR 80 (1046)
Q Consensus 4 I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~---~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 80 (1046)
|.|++|.||||+|+.+++++. | ..++ -+++...... .+.+++ .+....... ...+.....++.++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~---~~is~~~llr~~~~~~s---~~g~~i-~~~l~~g~~--vp~~~v~~ll~~~l~ 69 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--L---VHISVGDLLREEIKSDS---ELGKQI-QEYLDNGEL--VPDELVIELLKERLE 69 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--S---EEEEHHHHHHHHHHTTS---HHHHHH-HHHHHTTSS----HHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC--c---ceechHHHHHHHHhhhh---HHHHHH-HHHHHhhcc--chHHHHHHHHHHHHh
Confidence 789999999999999998752 2 3333 1122211111 111122 111111111 223344555666654
Q ss_pred C--CeEEEEEecCC-ChHHHHHHhh
Q 001603 81 Q--KKVLLVIDDVA-DVEQLQNLAR 102 (1046)
Q Consensus 81 ~--kr~LlVlDdv~-~~~~~~~l~~ 102 (1046)
. ..--+|||++= +.+|.+.+..
T Consensus 70 ~~~~~~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 70 QPPCNRGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp SGGTTTEEEEESB-SSHHHHHHHHH
T ss_pred hhcccceeeeeeccccHHHHHHHHH
Confidence 2 24557899994 4566665544
No 256
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.60 E-value=0.037 Score=53.24 Aligned_cols=98 Identities=17% Similarity=0.259 Sum_probs=54.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLR 80 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 80 (1046)
+++|.|..|.|||||++.+...... ..+.+++...+...- +.+ + .......-.+.+.+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~~~i~~----~~~--------l--------S~G~~~rv~laral~ 86 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGSTVKIGY----FEQ--------L--------SGGEKMRLALAKLLL 86 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCeEEEEE----Ecc--------C--------CHHHHHHHHHHHHHh
Confidence 4799999999999999999875432 344555542111100 000 0 111112223455555
Q ss_pred CCeEEEEEecCCC---h---HHHHHHhhccCCCCCCCEEEEEeCChhhHH
Q 001603 81 QKKVLLVIDDVAD---V---EQLQNLARKRDWFGPGSKIVITTRDKQLLV 124 (1046)
Q Consensus 81 ~kr~LlVlDdv~~---~---~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~ 124 (1046)
.++=++++|+-.. . +.+.++.... +..||++|.+.....
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~-----~~til~~th~~~~~~ 131 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY-----PGTVILVSHDRYFLD 131 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc-----CCEEEEEECCHHHHH
Confidence 6677889998742 2 2333333332 246888888766543
No 257
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.60 E-value=0.031 Score=63.49 Aligned_cols=90 Identities=22% Similarity=0.279 Sum_probs=50.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCccc---cccc--------c
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISI---WNVD--------D 70 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~---~~~~--------~ 70 (1046)
++|.|.+|+|||||+..+......+...++.+.-+.+ +...+.++.++++..-.......+ .+.. .
T Consensus 147 ~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGE---R~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 147 IGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE---RTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred EEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc---CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 6899999999999999888766544333333333433 222255555555543110000000 0110 1
Q ss_pred hHHHHHHhh---cCCeEEEEEecCCCh
Q 001603 71 GINIIGSRL---RQKKVLLVIDDVADV 94 (1046)
Q Consensus 71 ~~~~i~~~L---~~kr~LlVlDdv~~~ 94 (1046)
....+.+++ +++.|||++||+-..
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecchHHH
Confidence 122355666 679999999998543
No 258
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.58 E-value=0.085 Score=58.70 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=22.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHcccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEF 27 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f 27 (1046)
+|+++|+.|+||||++.+++.....++
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~~~~ 165 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCVMRF 165 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 578999999999999999998754433
No 259
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.57 E-value=0.017 Score=57.08 Aligned_cols=79 Identities=10% Similarity=0.109 Sum_probs=43.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCccccccc----chHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVD----DGINIIG 76 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~----~~~~~i~ 76 (1046)
+|.|.|.+|.||||+|..+...... ...++... ... -.+.++.+.......... +..- .....+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~---~~~~iat~-----~~~-~~e~~~ri~~h~~~R~~~--w~t~E~~~~l~~~i~ 71 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL---QVLYIATA-----QPF-DDEMAARIAHHRQRRPAH--WQTVEEPLDLAELLR 71 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC---CcEeCcCC-----CCC-hHHHHHHHHHHHhcCCCC--CeEecccccHHHHHH
Confidence 4789999999999999998876432 23444311 111 345555655544422221 2211 2233333
Q ss_pred HhhcCCeEEEEEecC
Q 001603 77 SRLRQKKVLLVIDDV 91 (1046)
Q Consensus 77 ~~L~~kr~LlVlDdv 91 (1046)
....+ .-++|+|.+
T Consensus 72 ~~~~~-~~~VlID~L 85 (170)
T PRK05800 72 ADAAP-GRCVLVDCL 85 (170)
T ss_pred hhcCC-CCEEEehhH
Confidence 32332 336888987
No 260
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.55 E-value=0.073 Score=56.73 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=22.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
+|.++|++|+||||+|+++.+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999877543
No 261
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.079 Score=59.37 Aligned_cols=123 Identities=21% Similarity=0.185 Sum_probs=70.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh--
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL-- 79 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L-- 79 (1046)
|.++|++|.|||-|||+++-+..-. +|...-.+. .+ .-+..+.+.+++.+
T Consensus 340 VLLvGPPGTGKTlLARAvAGEA~VP----FF~~sGSEF-------dE-----------------m~VGvGArRVRdLF~a 391 (752)
T KOG0734|consen 340 VLLVGPPGTGKTLLARAVAGEAGVP----FFYASGSEF-------DE-----------------MFVGVGARRVRDLFAA 391 (752)
T ss_pred eEEeCCCCCchhHHHHHhhcccCCC----eEeccccch-------hh-----------------hhhcccHHHHHHHHHH
Confidence 6789999999999999998753222 232211111 00 11223444455444
Q ss_pred --cCCeEEEEEecCCCh-------------HHHHHHhhccCCCCCCCEE--EEEeCChh-hHHHh----cCCCcceEecC
Q 001603 80 --RQKKVLLVIDDVADV-------------EQLQNLARKRDWFGPGSKI--VITTRDKQ-LLVAH----EVDEEHIYNLE 137 (1046)
Q Consensus 80 --~~kr~LlVlDdv~~~-------------~~~~~l~~~~~~~~~gs~I--iiTTR~~~-~~~~~----~~~~~~~~~l~ 137 (1046)
+.-+++|.+|.+|.. ..+..++...+-|.+..-| |-.|...+ +-.+. ..+. .+.|.
T Consensus 392 Ak~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~--~v~Vp 469 (752)
T KOG0734|consen 392 AKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDR--HVTVP 469 (752)
T ss_pred HHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccce--eEecC
Confidence 357899999999753 1255666666655544333 33343333 32222 1233 67777
Q ss_pred CCChHHHHHHHHHhhcC
Q 001603 138 VLSNDEALQLFSMKAFK 154 (1046)
Q Consensus 138 ~L~~~ea~~Lf~~~a~~ 154 (1046)
.-+..--.++|.++.-+
T Consensus 470 ~PDv~GR~eIL~~yl~k 486 (752)
T KOG0734|consen 470 LPDVRGRTEILKLYLSK 486 (752)
T ss_pred CCCcccHHHHHHHHHhc
Confidence 77777777777777644
No 262
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.54 E-value=0.013 Score=48.07 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=21.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
+|+|.|..|.||||+|+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999876
No 263
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.53 E-value=0.046 Score=54.14 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
+++|+|..|.|||||++.+...+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 264
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.063 Score=56.19 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=22.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
.++|||+.|.|||-+|++|+..+--.
T Consensus 168 g~ll~GppGtGKTlla~~Vaa~mg~n 193 (388)
T KOG0651|consen 168 GLLLYGPPGTGKTLLARAVAATMGVN 193 (388)
T ss_pred eeEEeCCCCCchhHHHHHHHHhcCCc
Confidence 37899999999999999999876554
No 265
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.52 E-value=0.044 Score=54.54 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=18.4
Q ss_pred CEEEEcCCCCcHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAY 20 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~ 20 (1046)
+|+|+|+.|+|||||.+.+.
T Consensus 23 ~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999999885
No 266
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.50 E-value=0.12 Score=64.14 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
+.++|+.|+|||+||+.+++.+.
T Consensus 487 ~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 487 FLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred EEEECCCCccHHHHHHHHHHHhc
Confidence 56899999999999999998773
No 267
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.12 Score=61.77 Aligned_cols=147 Identities=20% Similarity=0.271 Sum_probs=87.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh--
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL-- 79 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L-- 79 (1046)
|-++|++|+|||-||++++-+.. +=|+..... + +.+.+. ..+...+++.+
T Consensus 347 vLL~GPPGTGKTLLAKAiAGEAg-----VPF~svSGS---------E----FvE~~~----------g~~asrvr~lf~~ 398 (774)
T KOG0731|consen 347 VLLVGPPGTGKTLLAKAIAGEAG-----VPFFSVSGS---------E----FVEMFV----------GVGASRVRDLFPL 398 (774)
T ss_pred eEEECCCCCcHHHHHHHHhcccC-----CceeeechH---------H----HHHHhc----------ccchHHHHHHHHH
Confidence 56899999999999999987532 234442111 1 111110 01122233322
Q ss_pred --cCCeEEEEEecCCCh-----------------HHHHHHhhccCCCCCCC-EEEE-EeCChhhHHHh-----cCCCcce
Q 001603 80 --RQKKVLLVIDDVADV-----------------EQLQNLARKRDWFGPGS-KIVI-TTRDKQLLVAH-----EVDEEHI 133 (1046)
Q Consensus 80 --~~kr~LlVlDdv~~~-----------------~~~~~l~~~~~~~~~gs-~Iii-TTR~~~~~~~~-----~~~~~~~ 133 (1046)
...+.+|.+|++|.. ..+.++....+-+.... .|++ +|+..+++... .++. .
T Consensus 399 ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr--~ 476 (774)
T KOG0731|consen 399 ARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDR--Q 476 (774)
T ss_pred hhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCcccc--c
Confidence 356788898988642 12666666666555444 3333 44433333221 2344 7
Q ss_pred EecCCCChHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHH
Q 001603 134 YNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLAL 180 (1046)
Q Consensus 134 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 180 (1046)
+.++.-+..+..++|.-++-+.... .+..++++ ++...-|.+=|-
T Consensus 477 i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 477 IQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred eeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 8999999999999999998655543 34445666 888998888664
No 268
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.49 E-value=0.1 Score=52.68 Aligned_cols=91 Identities=19% Similarity=0.343 Sum_probs=53.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
|.+||.-|.||++|++++.+.+.++.-. .+..-++. +.. .....+.++. ..
T Consensus 88 VLLwGaRGtGKSSLVKA~~~e~~~~glr--LVEV~k~d------l~~-------------------Lp~l~~~Lr~--~~ 138 (287)
T COG2607 88 VLLWGARGTGKSSLVKALLNEYADEGLR--LVEVDKED------LAT-------------------LPDLVELLRA--RP 138 (287)
T ss_pred eEEecCCCCChHHHHHHHHHHHHhcCCe--EEEEcHHH------Hhh-------------------HHHHHHHHhc--CC
Confidence 6799999999999999999988876543 33311110 111 1111122222 46
Q ss_pred CeEEEEEecCC--C-hHHHHHHhhcc---CCCCCCCEEEEEeCChh
Q 001603 82 KKVLLVIDDVA--D-VEQLQNLARKR---DWFGPGSKIVITTRDKQ 121 (1046)
Q Consensus 82 kr~LlVlDdv~--~-~~~~~~l~~~~---~~~~~gs~IiiTTR~~~ 121 (1046)
+||+|..||.. + .+....+...+ ....|...++..|.++.
T Consensus 139 ~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 139 EKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred ceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 89999999983 2 23344443333 23345566676666653
No 269
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.45 E-value=0.036 Score=57.70 Aligned_cols=92 Identities=14% Similarity=0.227 Sum_probs=47.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
|.|.|++|+||||+|+.+++++. +....-=.-+++.......+....+.++.+ ... ...+.....+.+.+..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g--~~~is~gdllr~~~~~~t~lg~~i~~~~~~----G~l--vpd~iv~~lv~~~l~~ 80 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN--LKHINMGNILREEIKAKTTIGKEIQKVVTS----GNL--VPDNLVIAIVKDEIAK 80 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CcEEECChHHHHHhhcCChHHHHHHHHHHc----CCc--CCHHHHHHHHHHHHHh
Confidence 78999999999999999988652 222211111222221111122222222221 111 2222344455555533
Q ss_pred ----CeEEEEEecC-CChHHHHHHh
Q 001603 82 ----KKVLLVIDDV-ADVEQLQNLA 101 (1046)
Q Consensus 82 ----kr~LlVlDdv-~~~~~~~~l~ 101 (1046)
...-+|||+. .+..|.+.+.
T Consensus 81 ~~~~~~~g~iLDGfPRt~~Qa~~l~ 105 (229)
T PTZ00088 81 VTDDCFKGFILDGFPRNLKQCKELG 105 (229)
T ss_pred hccccCceEEEecCCCCHHHHHHHH
Confidence 3345799998 4556655553
No 270
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.45 E-value=0.027 Score=58.75 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=26.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
++.|.|.+|+||||+|.+++.....+-..++|++
T Consensus 21 i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 21 VTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4789999999999999999877655444566765
No 271
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.084 Score=62.62 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=71.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCccccccc-chHHHHHHhhc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVD-DGINIIGSRLR 80 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~~~i~~~L~ 80 (1046)
|-++|++|.|||.||+++++.....|-.... .+. . .+.. .... ..........+
T Consensus 279 iLl~GpPGtGKT~lAkava~~~~~~fi~v~~----~~l----------~----sk~v-------Gesek~ir~~F~~A~~ 333 (494)
T COG0464 279 VLLYGPPGTGKTLLAKAVALESRSRFISVKG----SEL----------L----SKWV-------GESEKNIRELFEKARK 333 (494)
T ss_pred eEEECCCCCCHHHHHHHHHhhCCCeEEEeeC----HHH----------h----cccc-------chHHHHHHHHHHHHHc
Confidence 6789999999999999999965544332111 011 1 1000 0011 11122223335
Q ss_pred CCeEEEEEecCCChH-------------HHHHHhhccCCCCCCC--EEEEEeCChhhHHHh-----cCCCcceEecCCCC
Q 001603 81 QKKVLLVIDDVADVE-------------QLQNLARKRDWFGPGS--KIVITTRDKQLLVAH-----EVDEEHIYNLEVLS 140 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~~-------------~~~~l~~~~~~~~~gs--~IiiTTR~~~~~~~~-----~~~~~~~~~l~~L~ 140 (1046)
..+..|.+|++|... ...+++.........+ .||-||-........ ..+ ..+.+..-+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd--~~i~v~~pd 411 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFD--RLIYVPLPD 411 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccc--eEeecCCCC
Confidence 788999999997531 2333443333223333 344444433322211 233 389999999
Q ss_pred hHHHHHHHHHhhcCCC
Q 001603 141 NDEALQLFSMKAFKTR 156 (1046)
Q Consensus 141 ~~ea~~Lf~~~a~~~~ 156 (1046)
.++..+.|..+.-...
T Consensus 412 ~~~r~~i~~~~~~~~~ 427 (494)
T COG0464 412 LEERLEIFKIHLRDKK 427 (494)
T ss_pred HHHHHHHHHHHhcccC
Confidence 9999999999985433
No 272
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.42 E-value=0.094 Score=57.98 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=22.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
+|+|+|++|+||||++.+++..+..+
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 48999999999999999998766543
No 273
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.42 E-value=0.079 Score=59.39 Aligned_cols=23 Identities=26% Similarity=0.105 Sum_probs=20.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
+|+|+|++|+||||+|.+++...
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998654
No 274
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.41 E-value=0.061 Score=67.31 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISH 25 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~ 25 (1046)
+.++|+.|+|||.+|+++++.+-.
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhC
Confidence 678999999999999999987643
No 275
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.39 E-value=0.055 Score=54.82 Aligned_cols=34 Identities=21% Similarity=0.047 Sum_probs=25.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
++.|.|.+|+|||++|.++......+=..+.|+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4789999999999999887765433334456665
No 276
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.38 E-value=0.011 Score=54.22 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccce
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDG 29 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~ 29 (1046)
|.|+|.+|+||||+|++++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6799999999999999999988877754
No 277
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.37 E-value=0.11 Score=57.85 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=37.8
Q ss_pred CCeEEEEEecCCChH--HHHHHhhccCCCCCCCEEEEEeCChh-hHHHhcCCCcceEecCCCChHHH
Q 001603 81 QKKVLLVIDDVADVE--QLQNLARKRDWFGPGSKIVITTRDKQ-LLVAHEVDEEHIYNLEVLSNDEA 144 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~~-~~~~~~~~~~~~~~l~~L~~~ea 144 (1046)
++.-++|+|++|... .-..+..........+++|++|.... +..... .....+++.+.+..+.
T Consensus 108 ~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~-SRc~~i~f~~~~~~~~ 173 (325)
T COG0470 108 GGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIR-SRCQRIRFKPPSRLEA 173 (325)
T ss_pred CCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhh-hcceeeecCCchHHHH
Confidence 567789999999763 34555555555567788888887443 332221 2223677777444443
No 278
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.36 E-value=0.048 Score=54.61 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHcc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISH 25 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~ 25 (1046)
+|+|.|++|.||||+|+.++..+..
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987754
No 279
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.35 E-value=0.045 Score=57.75 Aligned_cols=34 Identities=18% Similarity=0.082 Sum_probs=24.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
++.|+|.+|+||||+|.++......+=..+.|+.
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 4789999999999999998654323334556665
No 280
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.29 E-value=0.027 Score=54.43 Aligned_cols=115 Identities=16% Similarity=0.121 Sum_probs=59.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHh-----hccCcccccc-------
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLL-----KLADISIWNV------- 68 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-----~~~~~~~~~~------- 68 (1046)
+|-|++..|.||||+|...+-+...+=-.+.|+.-++.. ...+ -..+++.+ ..+. ........+.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~~g-E~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WKYG-ELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-CccC-HHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 467888899999999988877655443334444433321 1122 22233222 1111 0000000011
Q ss_pred cchHHHHHHhhc-CCeEEEEEecCCCh--------HHHHHHhhccCCCCCCCEEEEEeCChh
Q 001603 69 DDGINIIGSRLR-QKKVLLVIDDVADV--------EQLQNLARKRDWFGPGSKIVITTRDKQ 121 (1046)
Q Consensus 69 ~~~~~~i~~~L~-~kr~LlVlDdv~~~--------~~~~~l~~~~~~~~~gs~IiiTTR~~~ 121 (1046)
.+..+..++.+. ++-=|||||++-.. +++.++... ...+.-||+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~---rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA---KPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc---CCCCCEEEEECCCCC
Confidence 112223334443 45569999998432 334444443 346778999999875
No 281
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.29 E-value=0.05 Score=57.41 Aligned_cols=89 Identities=16% Similarity=0.068 Sum_probs=49.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHc----cccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCccc---ccccch---
Q 001603 2 MGIWGMGGLGKTTLARVAYDLIS----HEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISI---WNVDDG--- 71 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~----~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~---~~~~~~--- 71 (1046)
++|.|-+|+|||||+..+.+... .+-+.++|.. +.+ +...+.++.+++...=......-. .+....
T Consensus 72 ~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~-IGe---R~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 72 IPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAA-MGI---TMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred EEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEE-ecc---ccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 68999999999999998887543 1234455544 333 222255555555443110000000 111111
Q ss_pred -----HHHHHHhhc---CCeEEEEEecCCCh
Q 001603 72 -----INIIGSRLR---QKKVLLVIDDVADV 94 (1046)
Q Consensus 72 -----~~~i~~~L~---~kr~LlVlDdv~~~ 94 (1046)
.-.+.++++ ++++|+++||+-..
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 123455553 68999999998654
No 282
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.28 E-value=0.077 Score=60.62 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
+|.++|.+|+||||.|..++..++.+
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 47899999999999999999877654
No 283
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.22 Score=55.44 Aligned_cols=146 Identities=16% Similarity=0.158 Sum_probs=76.7
Q ss_pred EEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcCC
Q 001603 3 GIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQK 82 (1046)
Q Consensus 3 ~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k 82 (1046)
.++|++|.||||+..++++.+.. .++.....++... .+ ++.++.. ...
T Consensus 239 LLYGPPGTGKSS~IaAmAn~L~y----dIydLeLt~v~~n----~d-Lr~LL~~-----------------------t~~ 286 (457)
T KOG0743|consen 239 LLYGPPGTGKSSFIAAMANYLNY----DIYDLELTEVKLD----SD-LRHLLLA-----------------------TPN 286 (457)
T ss_pred eeeCCCCCCHHHHHHHHHhhcCC----ceEEeeeccccCc----HH-HHHHHHh-----------------------CCC
Confidence 47999999999999999986543 2333322221111 11 2222211 245
Q ss_pred eEEEEEecCCChHH--------------------HHHHhhcc--CCCCC-CCEEE-EEeCChhhHHHh-----cCCCcce
Q 001603 83 KVLLVIDDVADVEQ--------------------LQNLARKR--DWFGP-GSKIV-ITTRDKQLLVAH-----EVDEEHI 133 (1046)
Q Consensus 83 r~LlVlDdv~~~~~--------------------~~~l~~~~--~~~~~-gs~Ii-iTTR~~~~~~~~-----~~~~~~~ 133 (1046)
+-+||+.|+|-.-+ +.-|+-.. .|... +-||| .||...+-+... .++. .
T Consensus 287 kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDm--h 364 (457)
T KOG0743|consen 287 KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDM--H 364 (457)
T ss_pred CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCccee--E
Confidence 56777777764311 11122111 12333 35665 566655443322 2333 6
Q ss_pred EecCCCChHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhc
Q 001603 134 YNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSFL 187 (1046)
Q Consensus 134 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L 187 (1046)
+.+.-=+.+.-..||..+..... +. .+..+|.+...|.-+.=..++..|
T Consensus 365 I~mgyCtf~~fK~La~nYL~~~~-~h----~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 365 IYMGYCTFEAFKTLASNYLGIEE-DH----RLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred EEcCCCCHHHHHHHHHHhcCCCC-Cc----chhHHHHHHhhcCccCHHHHHHHH
Confidence 78888888888889988875433 22 344455555555444434444333
No 284
>PRK08356 hypothetical protein; Provisional
Probab=95.27 E-value=0.093 Score=53.55 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=18.2
Q ss_pred CEEEEcCCCCcHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAY 20 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~ 20 (1046)
+|+|.|++|+||||+|+.+.
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999993
No 285
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.26 E-value=0.052 Score=61.55 Aligned_cols=90 Identities=22% Similarity=0.269 Sum_probs=50.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcc-c--cccc--------c
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADIS-I--WNVD--------D 70 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~-~--~~~~--------~ 70 (1046)
++|.|.+|+|||||+..+......+...++.+.-+.+- ...+.++.+++...=....... . .+.. .
T Consensus 146 ~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER---~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~ 222 (461)
T TIGR01039 146 IGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGER---TREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVAL 222 (461)
T ss_pred EEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCC---chHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 68999999999999999887665443434444444332 2225556665543211000000 0 1111 1
Q ss_pred hHHHHHHhh---cCCeEEEEEecCCCh
Q 001603 71 GINIIGSRL---RQKKVLLVIDDVADV 94 (1046)
Q Consensus 71 ~~~~i~~~L---~~kr~LlVlDdv~~~ 94 (1046)
....+.+++ +++.+|||+||+-..
T Consensus 223 ~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 223 TGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 122355666 468999999999553
No 286
>PTZ00301 uridine kinase; Provisional
Probab=95.26 E-value=0.013 Score=60.14 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=23.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHcccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEF 27 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f 27 (1046)
+|||.|.+|.||||+|+.+.+++...+
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 599999999999999999998775443
No 287
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.26 E-value=0.064 Score=53.95 Aligned_cols=121 Identities=23% Similarity=0.303 Sum_probs=61.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEec--hhhhc-ccCCHHHHHHHHHHHHhhc--cCccccccc---chH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANV--REKSE-KEGSVVSLQKQLLSDLLKL--ADISIWNVD---DGI 72 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~~~~-~~~~~~~l~~~ll~~l~~~--~~~~~~~~~---~~~ 72 (1046)
+++|.|..|.|||||++.++..... ..+.+++... ..... ..........+++..++-. .+....... ...
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qr 105 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQR 105 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHH
Confidence 4799999999999999999875433 4555555421 11000 0000011112234443311 111111111 112
Q ss_pred HHHHHhhcCCeEEEEEecCCC---h---HHHHHHhhccCCCCCCCEEEEEeCChhhH
Q 001603 73 NIIGSRLRQKKVLLVIDDVAD---V---EQLQNLARKRDWFGPGSKIVITTRDKQLL 123 (1046)
Q Consensus 73 ~~i~~~L~~kr~LlVlDdv~~---~---~~~~~l~~~~~~~~~gs~IiiTTR~~~~~ 123 (1046)
-.+.+.+...+=++++|+--. . +.+.++...... ..+..||++|.+....
T Consensus 106 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tiii~sh~~~~~ 161 (180)
T cd03214 106 VLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR-ERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHH
Confidence 234555667788899999742 1 223333333211 1267888888887654
No 288
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.23 E-value=0.04 Score=56.52 Aligned_cols=86 Identities=21% Similarity=0.290 Sum_probs=47.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHh-hccCccc--ccccc--------
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLL-KLADISI--WNVDD-------- 70 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~~~~~~--~~~~~-------- 70 (1046)
++|.|.+|+|||+|+..+.+..... ..+++. +.+ +...+.++.+++...-. +..-... .+...
T Consensus 18 ~~I~g~~g~GKt~Ll~~i~~~~~~d--~~V~~~-iGe---r~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 18 IGIFGGAGVGKTVLLQEIANNQDAD--VVVYAL-IGE---RGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHHHCTTT--EEEEEE-ESE---CHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred EEEEcCcccccchhhHHHHhccccc--ceeeee-ccc---cchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 6899999999999999998876432 234444 222 21125555555543311 1100000 01000
Q ss_pred hHHHHHHhh--cCCeEEEEEecCCC
Q 001603 71 GINIIGSRL--RQKKVLLVIDDVAD 93 (1046)
Q Consensus 71 ~~~~i~~~L--~~kr~LlVlDdv~~ 93 (1046)
..-.+.+++ +++.+|+|+||+-.
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred cchhhhHHHhhcCCceeehhhhhHH
Confidence 011233334 58999999999854
No 289
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.23 E-value=0.065 Score=56.24 Aligned_cols=34 Identities=21% Similarity=0.139 Sum_probs=26.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHcccc------ceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEF------DGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~ 34 (1046)
++.|+|.+|+|||++|..++......- ..++|+.
T Consensus 21 v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 21 ITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred EEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 478999999999999998877554443 4566766
No 290
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.068 Score=64.22 Aligned_cols=91 Identities=19% Similarity=0.241 Sum_probs=52.1
Q ss_pred EEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHh-hccCcccccccchHHHHHHhhcC
Q 001603 3 GIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLL-KLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 3 ~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
...|+.|||||-||++++..+-+.=+.-+-++ ..|..+ +.-.++|. ..++. ...++ -..+-+..++
T Consensus 525 lF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-MSEy~E---------kHsVSrLIGaPPGY--VGyee-GG~LTEaVRr 591 (786)
T COG0542 525 LFLGPTGVGKTELAKALAEALFGDEQALIRID-MSEYME---------KHSVSRLIGAPPGY--VGYEE-GGQLTEAVRR 591 (786)
T ss_pred EeeCCCcccHHHHHHHHHHHhcCCCccceeec-hHHHHH---------HHHHHHHhCCCCCC--ceecc-ccchhHhhhc
Confidence 45899999999999999997654323333332 222222 22344443 33332 11112 3345566667
Q ss_pred CeE-EEEEecCCCh--HHHHHHhhccCC
Q 001603 82 KKV-LLVIDDVADV--EQLQNLARKRDW 106 (1046)
Q Consensus 82 kr~-LlVlDdv~~~--~~~~~l~~~~~~ 106 (1046)
++| +|.||+|+.. +.+.-|...++.
T Consensus 592 ~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 592 KPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred CCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 776 7888999854 456656655543
No 291
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.22 E-value=0.061 Score=67.78 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
+.++|+.|+|||++|+.+...+...
T Consensus 598 ~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 598 FLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 5689999999999999999876543
No 292
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.23 Score=56.86 Aligned_cols=125 Identities=16% Similarity=0.287 Sum_probs=73.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh-c
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL-R 80 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L-~ 80 (1046)
|.+||++|+|||-||++|+++-...| ++ +++ + + ++..-. ...+..++.+..+- .
T Consensus 548 vLL~GPPGCGKTLlAKAVANEag~NF-----is-VKG----P----E----LlNkYV-------GESErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 548 VLLCGPPGCGKTLLAKAVANEAGANF-----IS-VKG----P----E----LLNKYV-------GESERAVRQVFQRARA 602 (802)
T ss_pred eEEeCCCCccHHHHHHHHhhhccCce-----Ee-ecC----H----H----HHHHHh-------hhHHHHHHHHHHHhhc
Confidence 67899999999999999999866553 33 111 1 1 111110 11112222222222 3
Q ss_pred CCeEEEEEecCCCh-------------HHHHHHhhccCCC--CCCCEEEEEeCChhhH-HHh----cCCCcceEecCCCC
Q 001603 81 QKKVLLVIDDVADV-------------EQLQNLARKRDWF--GPGSKIVITTRDKQLL-VAH----EVDEEHIYNLEVLS 140 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~-------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~~~-~~~----~~~~~~~~~l~~L~ 140 (1046)
.-++.|.||.+|.. .....|+..++-. ..|--||-.|.-.++. .++ ..+. .+-|..-+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk--~LyV~lPn 680 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDK--LLYVGLPN 680 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCc--eeeecCCC
Confidence 57899999999753 1244555555422 2455556555433332 221 2333 78888889
Q ss_pred hHHHHHHHHHhhc
Q 001603 141 NDEALQLFSMKAF 153 (1046)
Q Consensus 141 ~~ea~~Lf~~~a~ 153 (1046)
.+|-.++++..+-
T Consensus 681 ~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 681 AEERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988875
No 293
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.21 E-value=0.051 Score=62.08 Aligned_cols=88 Identities=25% Similarity=0.254 Sum_probs=49.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccc-cceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCccc---cccc--------
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHE-FDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISI---WNVD-------- 69 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~---~~~~-------- 69 (1046)
++|.|.+|+|||||+..+......+ -+.++|. -+.+ +...+.++.+.+...-.......+ .+..
T Consensus 146 ~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~-liGE---R~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 146 TGLFGGAGVGKTVLMMELIFNISKQHSGSSVFA-GVGE---RSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred EEeecCCCCChhHHHHHHHHHHHhhCCCEEEEE-cCCc---chHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 7899999999999999888766533 3444444 3333 222255555555433110000000 1111
Q ss_pred chHHHHHHhh---cCCeEEEEEecCCC
Q 001603 70 DGINIIGSRL---RQKKVLLVIDDVAD 93 (1046)
Q Consensus 70 ~~~~~i~~~L---~~kr~LlVlDdv~~ 93 (1046)
.....+.+++ +++.+|+++||+-.
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchH
Confidence 1122355555 37999999999954
No 294
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.20 E-value=0.032 Score=58.00 Aligned_cols=52 Identities=21% Similarity=0.365 Sum_probs=36.0
Q ss_pred HHHHHHhhcCCeEEEEEecC----CCh--HHHHHHhhccCCCCCCCEEEEEeCChhhHHH
Q 001603 72 INIIGSRLRQKKVLLVIDDV----ADV--EQLQNLARKRDWFGPGSKIVITTRDKQLLVA 125 (1046)
Q Consensus 72 ~~~i~~~L~~kr~LlVlDdv----~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~ 125 (1046)
...|.+.|.+++=|+|||.= |.. ..+.++...+. ..|..|+++|-|-+....
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHh
Confidence 34578888899999999973 433 33555555544 238889999998765443
No 295
>PRK14974 cell division protein FtsY; Provisional
Probab=95.19 E-value=0.087 Score=58.00 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
+|+++|+.|+||||++.+++..+..+
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999998888766543
No 296
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.15 E-value=0.013 Score=53.09 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
|-|+|.+|+|||++|+.++..+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5799999999999999988866544
No 297
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=0.00086 Score=68.28 Aligned_cols=80 Identities=14% Similarity=0.127 Sum_probs=43.4
Q ss_pred ccEEEecCCCCCCCCCCCCCCCceEEEcCCCCchhhcccccCCCCCcEEEcCCCcCCCC--CCCCCCCCCCCEEEeeCCC
Q 001603 373 LRLLDWHRYPLKSLPSNFQLEKTVEFNMCYSRIEELWNEIKYLNMLKVMKLSHSQNLIK--TPDFTGVPNLEELILEGCT 450 (1046)
Q Consensus 373 Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~--~~~l~~l~~L~~L~L~~~~ 450 (1046)
.+.|++-|+.+..+.-.-.++.|++|.||-|+|+.| ..+..+++|+.|.|..|.+... +.-+.++|+|+.|.|..|.
T Consensus 21 vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred hhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 444555555555554444566666666666666665 3455666666666666643211 1124556666666665554
Q ss_pred CCc
Q 001603 451 RLH 453 (1046)
Q Consensus 451 ~~~ 453 (1046)
-.+
T Consensus 100 Cc~ 102 (388)
T KOG2123|consen 100 CCG 102 (388)
T ss_pred ccc
Confidence 433
No 298
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.12 E-value=0.07 Score=56.95 Aligned_cols=112 Identities=17% Similarity=0.147 Sum_probs=61.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHh--hccCcc-cccc---cchHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLL--KLADIS-IWNV---DDGINII 75 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~--~~~~~~-~~~~---~~~~~~i 75 (1046)
++|+|+.|.|||||++.+...++.. .+.+++...+ .. ..+-..++..... ...+.. ..++ ......+
T Consensus 114 ~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~~-v~-----~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~ 186 (270)
T TIGR02858 114 TLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGKK-VG-----IVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGM 186 (270)
T ss_pred EEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCEE-ee-----cchhHHHHHHHhcccccccccccccccccchHHHHH
Confidence 6899999999999999999876643 3333332110 00 0000111111111 111100 0011 0111122
Q ss_pred HHhh-cCCeEEEEEecCCChHHHHHHhhccCCCCCCCEEEEEeCChhhH
Q 001603 76 GSRL-RQKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQLL 123 (1046)
Q Consensus 76 ~~~L-~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~ 123 (1046)
...+ ...+=++|+|.+...+.+..+..... .|..||+||-+..+.
T Consensus 187 ~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 2222 25778999999988887777766643 578899999876653
No 299
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.08 E-value=0.055 Score=53.36 Aligned_cols=113 Identities=16% Similarity=0.251 Sum_probs=58.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLR 80 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 80 (1046)
+++|.|..|.|||||++.++.... ...+.+++.... ... .. ..+..+ ..+.--... .......-.+.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~-~~~-~~-~~~~~~---~~i~~~~qL--S~G~~qrl~laral~ 98 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKE-VSF-AS-PRDARR---AGIAMVYQL--SVGERQMVEIARALA 98 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-CCc-CC-HHHHHh---cCeEEEEec--CHHHHHHHHHHHHHh
Confidence 479999999999999999987543 235555554211 100 00 111100 011100000 111122233455566
Q ss_pred CCeEEEEEecCCCh------HHHHHHhhccCCCCCCCEEEEEeCChhhHH
Q 001603 81 QKKVLLVIDDVADV------EQLQNLARKRDWFGPGSKIVITTRDKQLLV 124 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~ 124 (1046)
.++-++++|+--.. +.+.++...+. ..|..||++|.+.....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLR--AQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHH
Confidence 67788889997432 22333333222 24677888888876433
No 300
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.07 E-value=0.066 Score=53.31 Aligned_cols=21 Identities=38% Similarity=0.407 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDL 22 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~ 22 (1046)
|.|.|.+|.||||+|+.+.++
T Consensus 3 iiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999997
No 301
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.07 E-value=0.075 Score=52.93 Aligned_cols=102 Identities=16% Similarity=0.141 Sum_probs=54.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEech--hhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHh
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVR--EKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSR 78 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~--~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 78 (1046)
+++|+|..|.|||||++.+...+.. ..+.+.+.... -..+... + ..-....-.+.+.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~q~~~------------L--------SgGq~qrv~lara 85 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVYKPQYID------------L--------SGGELQRVAIAAA 85 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEEEEEEcccCC------------C--------CHHHHHHHHHHHH
Confidence 4799999999999999998875432 33444443210 0000000 0 1111222334555
Q ss_pred hcCCeEEEEEecCCCh------HHHHHHhhccCCCCCCCEEEEEeCChhhHH
Q 001603 79 LRQKKVLLVIDDVADV------EQLQNLARKRDWFGPGSKIVITTRDKQLLV 124 (1046)
Q Consensus 79 L~~kr~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~ 124 (1046)
+..++=++++|+--.. +.+..+...... ..+..||++|-+.....
T Consensus 86 l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLD 136 (177)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHH
Confidence 6667788999997421 222223322211 12356788888776544
No 302
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.04 E-value=0.16 Score=53.97 Aligned_cols=149 Identities=21% Similarity=0.217 Sum_probs=80.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcc-cCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEK-EGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLR 80 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 80 (1046)
|.|+|+.|.|||+|......+ .+.+.....+....+.... .-.+..+.+|+..++... .....+..+....+-..|+
T Consensus 52 viiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~-~k~~gsfte~l~~lL~~L~ 129 (408)
T KOG2228|consen 52 VIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQLALELNRI-VKSFGSFTENLSKLLEALK 129 (408)
T ss_pred eEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh-heeecccchhHHHHHHHHh
Confidence 679999999999998766654 2233333333333332221 111444445544444322 1222444455556666664
Q ss_pred ------CCeEEEEEecCCCh----HH--HHHHhhcc-CCCCCCCEEEEEeCChhhHHH-----hcCCCcceEecCCCChH
Q 001603 81 ------QKKVLLVIDDVADV----EQ--LQNLARKR-DWFGPGSKIVITTRDKQLLVA-----HEVDEEHIYNLEVLSND 142 (1046)
Q Consensus 81 ------~kr~LlVlDdv~~~----~~--~~~l~~~~-~~~~~gs~IiiTTR~~~~~~~-----~~~~~~~~~~l~~L~~~ 142 (1046)
+-+|++|+|.+|-. .| +..+.... ....|-+-|-+|||-.-+... -...+..++-++.++-+
T Consensus 130 ~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~ 209 (408)
T KOG2228|consen 130 KGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLG 209 (408)
T ss_pred cCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChH
Confidence 34799999998743 12 22333221 123566778899996533211 12233236667777777
Q ss_pred HHHHHHHHhh
Q 001603 143 EALQLFSMKA 152 (1046)
Q Consensus 143 ea~~Lf~~~a 152 (1046)
+-.++++...
T Consensus 210 ~yv~l~r~ll 219 (408)
T KOG2228|consen 210 DYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHh
Confidence 7777766554
No 303
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.02 E-value=0.12 Score=63.40 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
+.++|+.|+|||++|+.++..+.
T Consensus 491 ~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 491 FLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999998774
No 304
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.02 E-value=0.021 Score=57.61 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=23.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
+|||.|.+|.||||+|+.+++.+...
T Consensus 10 iIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 10 IIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 58999999999999999999988765
No 305
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.01 E-value=0.056 Score=60.40 Aligned_cols=107 Identities=17% Similarity=0.237 Sum_probs=62.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEE-echhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA-NVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL 79 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 79 (1046)
+|.|.|+.|.||||+++++.+.+.......++.. +..+.... . . .. +....... .+.....+.++..|
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~-~-~----~~----~i~q~evg-~~~~~~~~~l~~~l 192 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHR-N-K----RS----LINQREVG-LDTLSFANALRAAL 192 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhcc-C-c----cc----eEEccccC-CCCcCHHHHHHHhh
Confidence 4789999999999999999887765554444432 21111000 0 0 00 00000110 11223456788888
Q ss_pred cCCeEEEEEecCCChHHHHHHhhccCCCCCCCEEEEEeCChh
Q 001603 80 RQKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQ 121 (1046)
Q Consensus 80 ~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 121 (1046)
+..+=.|++|.+.+.+.+....... ..|-.|+.|.-...
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNS 231 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCC
Confidence 8899999999999887766543331 24555555554433
No 306
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.99 E-value=0.077 Score=56.75 Aligned_cols=89 Identities=16% Similarity=0.115 Sum_probs=53.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLR 80 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 80 (1046)
+|.|.|..|.||||+++++.+.+...-...+.+.+..|..- .+ . .++.. .. .......+.++..|+
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~-~~-~--------~q~~v--~~--~~~~~~~~~l~~~lR 147 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI-PG-I--------NQVQV--NE--KAGLTFARGLRAILR 147 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC-CC-c--------eEEEe--CC--cCCcCHHHHHHHHhc
Confidence 47899999999999999988776542223344443322111 00 0 00000 00 111134567788888
Q ss_pred CCeEEEEEecCCChHHHHHHhhc
Q 001603 81 QKKVLLVIDDVADVEQLQNLARK 103 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~~~~~~l~~~ 103 (1046)
..+=.|+++++.+.+....+...
T Consensus 148 ~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 148 QDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred cCCCEEEeccCCCHHHHHHHHHH
Confidence 88899999999998876554443
No 307
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.98 E-value=0.061 Score=54.80 Aligned_cols=103 Identities=22% Similarity=0.218 Sum_probs=51.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh-
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL- 79 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L- 79 (1046)
++.|.|.+|.||||+++.+.+.+..+=..++++.- +......+.+. .+.. .......+...-
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap------T~~Aa~~L~~~----~~~~-------a~Ti~~~l~~~~~ 82 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP------TNKAAKELREK----TGIE-------AQTIHSFLYRIPN 82 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES------SHHHHHHHHHH----HTS--------EEEHHHHTTEECC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC------cHHHHHHHHHh----hCcc-------hhhHHHHHhcCCc
Confidence 35789999999999999988866654222333331 11102222222 2100 000001110000
Q ss_pred --------cCCeEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCChhh
Q 001603 80 --------RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQL 122 (1046)
Q Consensus 80 --------~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~~ 122 (1046)
..++-+||+|++... .++..+..... ..|.|+|+.--..++
T Consensus 83 ~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~QL 133 (196)
T PF13604_consen 83 GDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPNQL 133 (196)
T ss_dssp EECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TTSH
T ss_pred ccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcchh
Confidence 123459999999754 45666666543 257888877655543
No 308
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.98 E-value=0.097 Score=56.21 Aligned_cols=36 Identities=31% Similarity=0.589 Sum_probs=27.2
Q ss_pred eEEEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCChh
Q 001603 83 KVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQ 121 (1046)
Q Consensus 83 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~ 121 (1046)
.-++|+|...+. .++..+... .|+||||+.|---.+
T Consensus 352 ~~FiIIDEaQNLTpheikTiltR---~G~GsKIVl~gd~aQ 389 (436)
T COG1875 352 DSFIIIDEAQNLTPHELKTILTR---AGEGSKIVLTGDPAQ 389 (436)
T ss_pred cceEEEehhhccCHHHHHHHHHh---ccCCCEEEEcCCHHH
Confidence 568999999875 567666655 589999999876543
No 309
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.97 E-value=0.017 Score=59.80 Aligned_cols=23 Identities=43% Similarity=0.703 Sum_probs=21.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
+|+|.|.+|+||||||+.++..+
T Consensus 8 iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 8 IIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 310
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.96 E-value=0.094 Score=52.97 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
+|+|.|.+|.||||+|+.+...+.
T Consensus 20 ~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 20 VIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998764
No 311
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.95 E-value=0.15 Score=54.01 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
+..|+|++|+||||||..++-.+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 357999999999999998887543
No 312
>PRK03839 putative kinase; Provisional
Probab=94.95 E-value=0.02 Score=57.69 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHcc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISH 25 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~ 25 (1046)
.|.|.|++|+||||+|+++++++.-
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3789999999999999999997643
No 313
>PRK04040 adenylate kinase; Provisional
Probab=94.94 E-value=0.022 Score=57.46 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=22.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
+|+|+|++|+||||+++.+.+++.
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999999875
No 314
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.93 E-value=0.061 Score=56.85 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=25.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccc------cceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHE------FDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~------f~~~~~~~ 34 (1046)
++.|+|.+|+||||+|.+++...... -..++|+.
T Consensus 21 i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 21 ITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred EEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 47899999999999999887543222 25667776
No 315
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.93 E-value=0.04 Score=62.08 Aligned_cols=87 Identities=18% Similarity=0.276 Sum_probs=47.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCccc---ccccc--------
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISI---WNVDD-------- 70 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~---~~~~~-------- 70 (1046)
++|+|..|+|||||++.++..... +..++ .-+.+- ...+.++.++++..-........ .+...
T Consensus 165 igI~G~sG~GKSTLL~~I~~~~~~--dv~Vi-~lIGER---~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 165 MGLFAGSGVGKSVLLGMMTRGTTA--DVIVV-GLVGER---GREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred EEEECCCCCChhHHHHHhccCCCC--CEEEE-EEEcCC---hHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 799999999999999988864322 34444 333332 22244555554333110000000 11100
Q ss_pred hHHHHHHhh--cCCeEEEEEecCCCh
Q 001603 71 GINIIGSRL--RQKKVLLVIDDVADV 94 (1046)
Q Consensus 71 ~~~~i~~~L--~~kr~LlVlDdv~~~ 94 (1046)
....+.+++ +++.+|+++||+-..
T Consensus 239 ~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 239 TATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 112245555 589999999998543
No 316
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.93 E-value=0.05 Score=60.99 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=27.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
++.|.|.+|+|||||+.+++..+...-..+.|+.
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4789999999999999999887765544556665
No 317
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.92 E-value=0.018 Score=57.22 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=22.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
+|+|-||=|+||||||+.+++++.
T Consensus 6 ~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 6 VIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred EEEEecccccCHHHHHHHHHHHhC
Confidence 589999999999999999999776
No 318
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.92 E-value=0.14 Score=57.61 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
+|.++|+.|+||||.+..++..+.
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999887654
No 319
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.89 E-value=0.032 Score=55.88 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=22.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHcc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISH 25 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~ 25 (1046)
+|+|.|.+|.||||+|+.+...+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6999999999999999999987654
No 320
>PRK00625 shikimate kinase; Provisional
Probab=94.86 E-value=0.023 Score=56.35 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
|.|+||.|+||||+++.+.+++.
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999988764
No 321
>PRK08233 hypothetical protein; Provisional
Probab=94.85 E-value=0.018 Score=58.17 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
+|+|.|.+|.||||+|+.++..+.
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 589999999999999999998664
No 322
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.84 E-value=0.17 Score=55.90 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=25.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
+|+|+|+.|+||||++..++..+..+-..+.++.
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 5799999999999999998876644323344444
No 323
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.84 E-value=0.12 Score=51.41 Aligned_cols=113 Identities=16% Similarity=0.227 Sum_probs=58.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHh---hccCcc--------ccccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLL---KLADIS--------IWNVD 69 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~---~~~~~~--------~~~~~ 69 (1046)
+++|.|..|.|||||++.++..... ..+.+++.... ... .. ..... ..+. ...... .....
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~~-~~~-~~-~~~~~----~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGVD-LRD-LD-LESLR----KNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEE-hhh-cC-HHHHH----hhEEEEcCCchhccchHHHHhhCHHH
Confidence 4799999999999999999885432 34555543211 000 00 00100 0110 000000 00011
Q ss_pred chHHHHHHhhcCCeEEEEEecCCC------hHHHHHHhhccCCCCCCCEEEEEeCChhhHH
Q 001603 70 DGINIIGSRLRQKKVLLVIDDVAD------VEQLQNLARKRDWFGPGSKIVITTRDKQLLV 124 (1046)
Q Consensus 70 ~~~~~i~~~L~~kr~LlVlDdv~~------~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~ 124 (1046)
...-.+...+..++=++++|+-.. .+.+.++...+. .+..||++|.+.....
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~ 159 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHH
Confidence 112234555667778999999743 233444444332 3567888888877553
No 324
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.83 E-value=0.02 Score=59.13 Aligned_cols=24 Identities=46% Similarity=0.735 Sum_probs=21.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
+|+|+|++|.||||||+.+...+.
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999998664
No 325
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.82 E-value=0.036 Score=54.93 Aligned_cols=32 Identities=25% Similarity=0.252 Sum_probs=25.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHc-cccceeEEE
Q 001603 2 MGIWGMGGLGKTTLARVAYDLIS-HEFDGSTFL 33 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~~ 33 (1046)
+.+.|+.|+|||.||+++++.+. ......+-+
T Consensus 6 ~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~ 38 (171)
T PF07724_consen 6 FLLAGPSGVGKTELAKALAELLFVGSERPLIRI 38 (171)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhccCCccchHHH
Confidence 57899999999999999999877 454444443
No 326
>PRK07667 uridine kinase; Provisional
Probab=94.82 E-value=0.031 Score=56.92 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=23.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
+|||.|.+|.||||+|+.+.+.+...
T Consensus 19 iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 19 ILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 58999999999999999999877543
No 327
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=94.80 E-value=0.16 Score=51.39 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYD 21 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~ 21 (1046)
|+|+|.+|+|||||++.+..
T Consensus 9 ivviG~~~vGKTsll~~~~~ 28 (189)
T cd04121 9 FLLVGDSDVGKGEILASLQD 28 (189)
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999998876
No 328
>PRK10867 signal recognition particle protein; Provisional
Probab=94.80 E-value=0.13 Score=58.72 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=21.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
+|.++|.+|+||||.|..++..++.+
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 57899999999999998888766554
No 329
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.79 E-value=0.023 Score=54.07 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=22.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
+|+|+|+.|+|||||++.+.+.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 58999999999999999998865444
No 330
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.76 E-value=0.44 Score=53.15 Aligned_cols=147 Identities=16% Similarity=0.227 Sum_probs=83.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccce--eEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDG--STFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL 79 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 79 (1046)
+-|.|-+|.|||.+...++......... ++++.+. .-+....+...+...+....... ....+..+.+.+..
T Consensus 178 lYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~-----sl~~~~aiF~kI~~~~~q~~~s~-~~~~~~~~~~~~h~ 251 (529)
T KOG2227|consen 178 LYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCT-----SLTEASAIFKKIFSSLLQDLVSP-GTGMQHLEKFEKHT 251 (529)
T ss_pred eEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeec-----cccchHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHH
Confidence 3588999999999999999876554333 2444421 11125567777777774222221 11134445555555
Q ss_pred cC--CeEEEEEecCCChHH--HHHHhhccCCC-CCCCEEEEEeCC------hhhHHHhcC---CCcceEecCCCChHHHH
Q 001603 80 RQ--KKVLLVIDDVADVEQ--LQNLARKRDWF-GPGSKIVITTRD------KQLLVAHEV---DEEHIYNLEVLSNDEAL 145 (1046)
Q Consensus 80 ~~--kr~LlVlDdv~~~~~--~~~l~~~~~~~-~~gs~IiiTTR~------~~~~~~~~~---~~~~~~~l~~L~~~ea~ 145 (1046)
++ +.+|+|+|..|.... -..+..-+.|. -+++|+|+.--- ...+..... -....+..++.+.++-.
T Consensus 252 ~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~ 331 (529)
T KOG2227|consen 252 KQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIV 331 (529)
T ss_pred hcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHH
Confidence 54 369999999987531 11111112221 256666543211 111222211 12247888999999999
Q ss_pred HHHHHhhcC
Q 001603 146 QLFSMKAFK 154 (1046)
Q Consensus 146 ~Lf~~~a~~ 154 (1046)
+++..+.-.
T Consensus 332 ~Il~~rl~~ 340 (529)
T KOG2227|consen 332 EILQQRLSE 340 (529)
T ss_pred HHHHHHHhc
Confidence 999988743
No 331
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.75 E-value=0.15 Score=51.25 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=24.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
+++|.|..|.|||||++.++..... ..+.+++.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~ 62 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLD 62 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC-CCCEEEEC
Confidence 4799999999999999999875432 23444443
No 332
>PRK06696 uridine kinase; Validated
Probab=94.73 E-value=0.029 Score=58.63 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=23.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
+|+|.|.+|.||||+|+++.+.+...
T Consensus 24 iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 24 RVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999977543
No 333
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.70 E-value=0.11 Score=54.05 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
|.|.|++|.||||+|+.+++++
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998765
No 334
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.69 E-value=0.097 Score=56.68 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=21.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHcc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISH 25 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~ 25 (1046)
+|+|+|++|+||||++..++..+..
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999998876643
No 335
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.68 E-value=0.002 Score=65.71 Aligned_cols=97 Identities=20% Similarity=0.166 Sum_probs=75.8
Q ss_pred CCCccEEEeCCccCCC-chhccccCccEEEecCCCCCCCCCCCCCCCceEEEcCCCCchhhcc--cccCCCCCcEEEcCC
Q 001603 349 MTNLRLLKIDNLQLPE-GLEYLSNKLRLLDWHRYPLKSLPSNFQLEKTVEFNMCYSRIEELWN--EIKYLNMLKVMKLSH 425 (1046)
Q Consensus 349 l~~Lr~L~l~~~~l~~-~~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~--~~~~l~~L~~L~Ls~ 425 (1046)
+.+.+.|++-++.+.+ .+..-...|.+|.|+-|.+++|.+.-.+.+|.+|.|..|.|..+-+ -++++++|++|-|..
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 4556677777777755 4444455689999999999999888899999999999999988754 478999999999999
Q ss_pred CcCCCCCCC------CCCCCCCCEEE
Q 001603 426 SQNLIKTPD------FTGVPNLEELI 445 (1046)
Q Consensus 426 ~~~~~~~~~------l~~l~~L~~L~ 445 (1046)
|.-....+. +..+|||+.||
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhcc
Confidence 885555442 55688888886
No 336
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.66 E-value=0.29 Score=49.05 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=32.0
Q ss_pred hHHHHHHhhcCCeEEEEEecCCCh---HHHHHHhhccC-CCCCCCEEEEEeCChhhHHHh
Q 001603 71 GINIIGSRLRQKKVLLVIDDVADV---EQLQNLARKRD-WFGPGSKIVITTRDKQLLVAH 126 (1046)
Q Consensus 71 ~~~~i~~~L~~kr~LlVlDdv~~~---~~~~~l~~~~~-~~~~gs~IiiTTR~~~~~~~~ 126 (1046)
..-.|.+.|.=++-++.+|..-+. +-..+.+.... -...|-..||.|-+-..+...
T Consensus 143 QRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 143 QRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHh
Confidence 345678888888889999998542 22222111111 013466677777766665543
No 337
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.60 E-value=0.019 Score=58.04 Aligned_cols=21 Identities=29% Similarity=0.063 Sum_probs=19.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYD 21 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~ 21 (1046)
|+.|.|+.|.||||+++.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 688999999999999999884
No 338
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.59 E-value=0.092 Score=55.44 Aligned_cols=95 Identities=17% Similarity=0.120 Sum_probs=49.0
Q ss_pred EEEEcCCCCcHHHHH-HHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcc-c--ccccch------
Q 001603 2 MGIWGMGGLGKTTLA-RVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADIS-I--WNVDDG------ 71 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~-~--~~~~~~------ 71 (1046)
++|.|..|+|||+|| ..+.+.. +-+..+.+..+.+-. ..+.++.+++...-....... . .+....
T Consensus 72 ~~Ifg~~g~GKt~L~l~~i~~~~--~~~v~~V~~~iGer~---~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~ 146 (274)
T cd01132 72 ELIIGDRQTGKTAIAIDTIINQK--GKKVYCIYVAIGQKA---STVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAP 146 (274)
T ss_pred EEeeCCCCCCccHHHHHHHHHhc--CCCeEEEEEecccch---HHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHH
Confidence 689999999999996 5555432 234454444444322 225555555543311000000 0 111001
Q ss_pred --HHHHHHhh--cCCeEEEEEecCCCh-HHHHHHh
Q 001603 72 --INIIGSRL--RQKKVLLVIDDVADV-EQLQNLA 101 (1046)
Q Consensus 72 --~~~i~~~L--~~kr~LlVlDdv~~~-~~~~~l~ 101 (1046)
.-.+.+++ +++.+|||+||+-.. +.++++.
T Consensus 147 ~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEis 181 (274)
T cd01132 147 YTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMS 181 (274)
T ss_pred HHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHH
Confidence 12234444 479999999998654 3344433
No 339
>PRK14529 adenylate kinase; Provisional
Probab=94.59 E-value=0.13 Score=53.19 Aligned_cols=91 Identities=22% Similarity=0.171 Sum_probs=48.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
|.|.|++|+||||+|+.++..+.-. ...--..+|+.......+....++++.+ ... ...+.....+.+++.+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~--~is~gdllr~~i~~~t~lg~~i~~~i~~----G~l--vpdei~~~lv~~~l~~ 74 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA--HIESGAIFREHIGGGTELGKKAKEYIDR----GDL--VPDDITIPMILETLKQ 74 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC--CcccchhhhhhccCCChHHHHHHHHHhc----cCc--chHHHHHHHHHHHHhc
Confidence 7899999999999999999876432 1111111222111111133333333322 111 2333445666777743
Q ss_pred C-eEEEEEecCC-ChHHHHHH
Q 001603 82 K-KVLLVIDDVA-DVEQLQNL 100 (1046)
Q Consensus 82 k-r~LlVlDdv~-~~~~~~~l 100 (1046)
. .-=+|||++= +.+|.+.|
T Consensus 75 ~~~~g~iLDGfPRt~~Qa~~l 95 (223)
T PRK14529 75 DGKNGWLLDGFPRNKVQAEKL 95 (223)
T ss_pred cCCCcEEEeCCCCCHHHHHHH
Confidence 1 3458999993 45555544
No 340
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.58 E-value=0.028 Score=57.61 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=21.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
||||.|.+|+||||+|+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999998866
No 341
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.58 E-value=0.027 Score=58.43 Aligned_cols=24 Identities=46% Similarity=0.625 Sum_probs=22.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
+|||.|..|.||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 699999999999999999998775
No 342
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.58 E-value=0.06 Score=58.61 Aligned_cols=34 Identities=29% Similarity=0.341 Sum_probs=26.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
++-|+|++|+||||||.++......+-..++|++
T Consensus 57 iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 57 IIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 4679999999999999887776655545566765
No 343
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.58 E-value=0.027 Score=56.40 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=21.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
||+|.|.+|.||||+|+.+.+.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 69999999999999999999875
No 344
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.57 E-value=0.059 Score=52.97 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
|-+.|.+|+||||+|+.+++.+++.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHh
Confidence 6689999999999999999977665
No 345
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.56 E-value=0.053 Score=62.24 Aligned_cols=91 Identities=19% Similarity=0.181 Sum_probs=49.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcc-ccceeEEEEechhhhcccCCHHHHHHHHHHHHhh-ccCccc---ccccchHHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISH-EFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLK-LADISI---WNVDDGINIIG 76 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~-~~~~~~---~~~~~~~~~i~ 76 (1046)
++|+|++|+|||||++.+++.+.. +-+..+++.-+.+-. ..+.++.+.+-.++.. ..+... .......-.+.
T Consensus 419 ~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERp---eEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~A 495 (672)
T PRK12678 419 GLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERP---EEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERA 495 (672)
T ss_pred eEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCch---hhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHH
Confidence 589999999999999999997744 234444444443322 2143443333111111 001000 01111122344
Q ss_pred Hhh--cCCeEEEEEecCCChH
Q 001603 77 SRL--RQKKVLLVIDDVADVE 95 (1046)
Q Consensus 77 ~~L--~~kr~LlVlDdv~~~~ 95 (1046)
+++ .++.|||++|++-...
T Consensus 496 e~fre~G~dVlillDSlTR~A 516 (672)
T PRK12678 496 KRLVELGKDVVVLLDSITRLG 516 (672)
T ss_pred HHHHHcCCCEEEEEeCchHHH
Confidence 555 5899999999986543
No 346
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.55 E-value=0.069 Score=57.05 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=20.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHcc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISH 25 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~ 25 (1046)
.|.|+|.+|.||||+|+.+.+.+..
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 3789999999999999999987665
No 347
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.54 E-value=0.13 Score=50.01 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=20.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDL 22 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~ 22 (1046)
+|.|.|++|+||||+|+.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 5889999999999999998886
No 348
>PRK14526 adenylate kinase; Provisional
Probab=94.52 E-value=0.12 Score=53.04 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
|+|+|+.|+||||+|+.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999988754
No 349
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.52 E-value=0.03 Score=57.16 Aligned_cols=25 Identities=36% Similarity=0.288 Sum_probs=20.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHcc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISH 25 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~ 25 (1046)
++.|+|++|+||||++..+...+..
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 3679999999999999988876543
No 350
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.51 E-value=0.094 Score=54.25 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
|.|.|++|.||||+|+.+.+++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998754
No 351
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.51 E-value=0.012 Score=35.83 Aligned_cols=20 Identities=40% Similarity=0.708 Sum_probs=11.4
Q ss_pred CCCeeeCCCCCCcccchhhh
Q 001603 748 SLKQLNLSQNNFVTLPASIN 767 (1046)
Q Consensus 748 ~L~~L~Ls~n~l~~lp~~i~ 767 (1046)
+|++|+|++|+++.+|..++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35566666666666665443
No 352
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.48 E-value=0.11 Score=55.76 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=24.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFL 33 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 33 (1046)
+|+++|++|+||||++..++..++.+-..+.++
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li 106 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA 106 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 478899999999999999988765542233343
No 353
>PRK13947 shikimate kinase; Provisional
Probab=94.46 E-value=0.031 Score=55.70 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
|.|+|++|+||||+|+.+++++.-.
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 7899999999999999999987543
No 354
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=94.44 E-value=0.13 Score=63.49 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=23.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHcccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEF 27 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f 27 (1046)
++.++|++|+||||+|+.++..+...|
T Consensus 351 ~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 351 ILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 478999999999999999998766544
No 355
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.43 E-value=0.068 Score=58.25 Aligned_cols=34 Identities=29% Similarity=0.293 Sum_probs=26.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
++-|+|++|+||||||.+++......-..++|++
T Consensus 57 iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 57 IIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 4679999999999999988766555545567776
No 356
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.42 E-value=0.19 Score=57.39 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
+|.++|.+|+||||.|..++..+.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 478999999999999998887754
No 357
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.37 E-value=0.14 Score=54.13 Aligned_cols=34 Identities=15% Similarity=0.061 Sum_probs=25.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
++.|.|.+|.|||++|.++......+-+.++|+.
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 4789999999999999876554323345566766
No 358
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.36 E-value=0.14 Score=51.14 Aligned_cols=113 Identities=16% Similarity=0.207 Sum_probs=58.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHh---hccCcc----------ccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLL---KLADIS----------IWN 67 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~---~~~~~~----------~~~ 67 (1046)
+++|+|..|.|||||++.++..... ..+.+++.... ... . . ......+. ...... ...
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~-~~~--~-~----~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKVLGKD-IKK--E-P----EEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEE-ccc--c-h----HhhhccEEEEecCCccccCCcHHHHhhcCH
Confidence 4799999999999999999875432 34444443210 000 0 0 00001111 000000 011
Q ss_pred ccchHHHHHHhhcCCeEEEEEecCCCh------HHHHHHhhccCCCCCCCEEEEEeCChhhHH
Q 001603 68 VDDGINIIGSRLRQKKVLLVIDDVADV------EQLQNLARKRDWFGPGSKIVITTRDKQLLV 124 (1046)
Q Consensus 68 ~~~~~~~i~~~L~~kr~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~ 124 (1046)
-....-.+...+..++=++++|+--.. +.+.++...+. ..|..||++|.+.....
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~ 159 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHH
Confidence 111222455666678889999997432 22333333322 23677899998877544
No 359
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.34 E-value=0.11 Score=53.09 Aligned_cols=22 Identities=27% Similarity=0.058 Sum_probs=19.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDL 22 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~ 22 (1046)
+++|.|+.|.||||+++.+...
T Consensus 27 ~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 5799999999999999998753
No 360
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.34 E-value=0.11 Score=51.98 Aligned_cols=33 Identities=36% Similarity=0.505 Sum_probs=24.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
+++|+|..|.|||||++.++..... ..+.+++.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~ 62 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRP-TSGRVRLD 62 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCC-CCCeEEEC
Confidence 4799999999999999999875432 34445443
No 361
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.32 E-value=0.34 Score=63.28 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
|.++|++|+|||.||++++...
T Consensus 1633 ILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1633 ILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred eEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999854
No 362
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.30 E-value=0.19 Score=52.55 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=23.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHH-ccccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLI-SHEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~-~~~f~~~~~~~ 34 (1046)
++.|.|..|+||||+|.++.... +.. ..++++.
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~ 59 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVS 59 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEe
Confidence 47899999999999986665544 333 3455554
No 363
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.29 E-value=0.11 Score=60.77 Aligned_cols=70 Identities=27% Similarity=0.378 Sum_probs=41.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh-
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL- 79 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L- 79 (1046)
|..++|++|+||||||..+++.-. |.. +=+ | +++... ...+-+.+...+... ..+
T Consensus 328 ilLL~GppGlGKTTLAHViAkqaG--YsV-vEI-N---ASDeRt-~~~v~~kI~~avq~~----------------s~l~ 383 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQAG--YSV-VEI-N---ASDERT-APMVKEKIENAVQNH----------------SVLD 383 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhcC--ceE-EEe-c---cccccc-HHHHHHHHHHHHhhc----------------cccc
Confidence 457899999999999999987432 221 111 1 122222 444444444444321 112
Q ss_pred -cCCeEEEEEecCCCh
Q 001603 80 -RQKKVLLVIDDVADV 94 (1046)
Q Consensus 80 -~~kr~LlVlDdv~~~ 94 (1046)
-+++.=||+|.+|-.
T Consensus 384 adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDGA 399 (877)
T ss_pred cCCCcceEEEecccCC
Confidence 267888999999864
No 364
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.28 E-value=0.19 Score=59.71 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
|.|+|..|+||||+|+.+++..
T Consensus 89 vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 89 VIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998743
No 365
>PRK06547 hypothetical protein; Provisional
Probab=94.28 E-value=0.035 Score=55.06 Aligned_cols=23 Identities=39% Similarity=0.277 Sum_probs=20.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
+|+|.|++|.||||+|+.+.+..
T Consensus 17 ~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 17 TVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998864
No 366
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=1.1 Score=45.43 Aligned_cols=121 Identities=18% Similarity=0.365 Sum_probs=70.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh--
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL-- 79 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L-- 79 (1046)
|.++|++|.|||-||++|++. ..+.|+.... .++.+.. ..++.+++++.+
T Consensus 184 vlLygppgtGktLlaraVahh-----t~c~firvsg---------selvqk~--------------igegsrmvrelfvm 235 (404)
T KOG0728|consen 184 VLLYGPPGTGKTLLARAVAHH-----TDCTFIRVSG---------SELVQKY--------------IGEGSRMVRELFVM 235 (404)
T ss_pred eEEecCCCCchhHHHHHHHhh-----cceEEEEech---------HHHHHHH--------------hhhhHHHHHHHHHH
Confidence 568999999999999999873 3345554221 1122111 112233333333
Q ss_pred --cCCeEEEEEecCCCh-------------H---HHHHHhhccCCC--CCCCEEEEEeCChhhHHHh-----cCCCcceE
Q 001603 80 --RQKKVLLVIDDVADV-------------E---QLQNLARKRDWF--GPGSKIVITTRDKQLLVAH-----EVDEEHIY 134 (1046)
Q Consensus 80 --~~kr~LlVlDdv~~~-------------~---~~~~l~~~~~~~--~~gs~IiiTTR~~~~~~~~-----~~~~~~~~ 134 (1046)
..-+-+|..|.+|.. + ..-+++..++-| .+.-+||+.|.--+++... ..+. .+
T Consensus 236 arehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridr--ki 313 (404)
T KOG0728|consen 236 AREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDR--KI 313 (404)
T ss_pred HHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccc--cc
Confidence 356778888998752 1 123444444433 2456777776544443322 2333 78
Q ss_pred ecCCCChHHHHHHHHHhh
Q 001603 135 NLEVLSNDEALQLFSMKA 152 (1046)
Q Consensus 135 ~l~~L~~~ea~~Lf~~~a 152 (1046)
+..+-+++...++++-+.
T Consensus 314 efp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 314 EFPPPNEEARLDILKIHS 331 (404)
T ss_pred cCCCCCHHHHHHHHHHhh
Confidence 888888888888877654
No 367
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.25 E-value=0.095 Score=59.53 Aligned_cols=89 Identities=20% Similarity=0.263 Sum_probs=49.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcc-ccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCccc---cccc--------
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISH-EFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISI---WNVD-------- 69 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~---~~~~-------- 69 (1046)
++|.|.+|+|||+|+..+...... +-+.++|.. +.+ +...+.++.+++...-........ .+..
T Consensus 141 ~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~-iGe---R~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 141 AGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCG-IGE---RCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred EEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEE-ecc---CcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 689999999999999988775542 234555543 333 222255555555433110000000 1110
Q ss_pred chHHHHHHhhc---CCeEEEEEecCCCh
Q 001603 70 DGINIIGSRLR---QKKVLLVIDDVADV 94 (1046)
Q Consensus 70 ~~~~~i~~~L~---~kr~LlVlDdv~~~ 94 (1046)
...-.+.++++ ++.+|+++||+-..
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 11223555654 69999999999543
No 368
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.24 E-value=0.036 Score=55.45 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
.|.|+|++|+||||+|+.+++.+.
T Consensus 6 ~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999863
No 369
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.24 E-value=0.33 Score=52.49 Aligned_cols=34 Identities=18% Similarity=0.035 Sum_probs=25.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccc-cceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHE-FDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~ 34 (1046)
++.|.|.+|+||||+|.+++.....+ =..+.|+.
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 46899999999999999988765443 23455655
No 370
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.24 E-value=0.067 Score=54.09 Aligned_cols=92 Identities=20% Similarity=0.198 Sum_probs=51.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHh-hccCcccccccchHHHHHHhh
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLL-KLADISIWNVDDGINIIGSRL 79 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~~~~~~~~~~~~~~~i~~~L 79 (1046)
+|+|.|..|.||||+++.+...+... ...+.+.+..+...... .. -++. ..............+.++..+
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~l~~~l 97 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPHP-------NW-VRLVTRPGNVEGSGEVTMADLLRSAL 97 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCCC-------CE-EEEEEecCCCCCCCccCHHHHHHHHh
Confidence 47999999999999999998876543 23333332222111000 00 0000 000000011223456667777
Q ss_pred cCCeEEEEEecCCChHHHHHHh
Q 001603 80 RQKKVLLVIDDVADVEQLQNLA 101 (1046)
Q Consensus 80 ~~kr~LlVlDdv~~~~~~~~l~ 101 (1046)
+..+=.++++.+.+.+.++.+.
T Consensus 98 R~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 98 RMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred ccCCCEEEEEccCcHHHHHHHH
Confidence 7778888999999887665443
No 371
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.22 E-value=0.1 Score=58.30 Aligned_cols=99 Identities=23% Similarity=0.389 Sum_probs=55.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
|-|||..|.|||.|+-.+|+.+..+-..++- ..+...++-+++.... .....+..+.+.+.+
T Consensus 65 lYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~H-------------Fh~Fm~~vh~~l~~~~-----~~~~~l~~va~~l~~ 126 (362)
T PF03969_consen 65 LYLWGPVGRGKTMLMDLFYDSLPIKRKRRVH-------------FHEFMLDVHSRLHQLR-----GQDDPLPQVADELAK 126 (362)
T ss_pred EEEECCCCCchhHHHHHHHHhCCcccccccc-------------ccHHHHHHHHHHHHHh-----CCCccHHHHHHHHHh
Confidence 4689999999999999999965432111111 1223333333333211 122345666777778
Q ss_pred CeEEEEEecCCC--hHH---HHHHhhccCCCCCCCEEEEEeCChh
Q 001603 82 KKVLLVIDDVAD--VEQ---LQNLARKRDWFGPGSKIVITTRDKQ 121 (1046)
Q Consensus 82 kr~LlVlDdv~~--~~~---~~~l~~~~~~~~~gs~IiiTTR~~~ 121 (1046)
+..||.||.+.- ..+ +..|...+ +..|. |||+|-+..
T Consensus 127 ~~~lLcfDEF~V~DiaDAmil~rLf~~l--~~~gv-vlVaTSN~~ 168 (362)
T PF03969_consen 127 ESRLLCFDEFQVTDIADAMILKRLFEAL--FKRGV-VLVATSNRP 168 (362)
T ss_pred cCCEEEEeeeeccchhHHHHHHHHHHHH--HHCCC-EEEecCCCC
Confidence 888999999743 222 33344332 23455 555555544
No 372
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.22 E-value=0.053 Score=52.75 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=23.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
||+|+|+.|+||||++.++...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999987655
No 373
>PRK09354 recA recombinase A; Provisional
Probab=94.20 E-value=0.086 Score=57.92 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=26.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
++-|+|++|+||||||.++.......-..++|++
T Consensus 62 IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 62 IVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 4679999999999999888776655555667776
No 374
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.20 E-value=0.15 Score=64.23 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISH 25 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~ 25 (1046)
+.++|+.|+|||+||+.+++.+-.
T Consensus 542 ~lf~Gp~GvGKt~lA~~LA~~l~~ 565 (821)
T CHL00095 542 FLFSGPTGVGKTELTKALASYFFG 565 (821)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Confidence 458999999999999999987643
No 375
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.19 E-value=0.06 Score=56.29 Aligned_cols=54 Identities=22% Similarity=0.302 Sum_probs=33.2
Q ss_pred HHHHHHhhcCCeEEEEEecC----CChHHHH--HHhhccCCCCCCCEEEEEeCChhhHHHh
Q 001603 72 INIIGSRLRQKKVLLVIDDV----ADVEQLQ--NLARKRDWFGPGSKIVITTRDKQLLVAH 126 (1046)
Q Consensus 72 ~~~i~~~L~~kr~LlVlDdv----~~~~~~~--~l~~~~~~~~~gs~IiiTTR~~~~~~~~ 126 (1046)
...|...|.++.=+++||+= |-..|++ ++...+. ...|-.||+++-|-..+..+
T Consensus 146 rv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~-~~~~~tvv~vlHDlN~A~ry 205 (258)
T COG1120 146 RVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN-REKGLTVVMVLHDLNLAARY 205 (258)
T ss_pred HHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH-HhcCCEEEEEecCHHHHHHh
Confidence 45677788888888999984 2223322 2222221 13567799999988766554
No 376
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.19 E-value=0.094 Score=55.76 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=28.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEe
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLAN 35 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 35 (1046)
++-|+|+.|.||||+|.+++-..+..-..++|++.
T Consensus 62 ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDt 96 (279)
T COG0468 62 ITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDT 96 (279)
T ss_pred EEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeC
Confidence 46799999999999998888766666667888873
No 377
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.17 E-value=0.18 Score=47.34 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=37.9
Q ss_pred cChhhhcCCCCccEEEeCCc--cCCCchhccccCccEEEecCCCCCCCCCCC--CCCCceEEEcCCCCchhhcc-cccCC
Q 001603 341 AGAKAFSQMTNLRLLKIDNL--QLPEGLEYLSNKLRLLDWHRYPLKSLPSNF--QLEKTVEFNMCYSRIEELWN-EIKYL 415 (1046)
Q Consensus 341 ~~~~~f~~l~~Lr~L~l~~~--~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l~~-~~~~l 415 (1046)
+...+|.++.+|+.+.+.+. .++...+.....|+.+.+.++ +..++... ...+|+.+.+.. .+..++. .+..+
T Consensus 3 i~~~~F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp E-TTTTTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred ECHHHHhCCCCCCEEEECCCeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 45678888888888887642 233433344434666666553 55555543 444556665544 3333332 24445
Q ss_pred CCCcEEEcCC
Q 001603 416 NMLKVMKLSH 425 (1046)
Q Consensus 416 ~~L~~L~Ls~ 425 (1046)
++|+.+++..
T Consensus 81 ~~l~~i~~~~ 90 (129)
T PF13306_consen 81 TNLKNIDIPS 90 (129)
T ss_dssp TTECEEEETT
T ss_pred ccccccccCc
Confidence 5555555544
No 378
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.17 E-value=0.29 Score=49.89 Aligned_cols=23 Identities=26% Similarity=0.151 Sum_probs=20.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
.|.|.|++|.||||+|+.+++++
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 38899999999999999998864
No 379
>PRK14528 adenylate kinase; Provisional
Probab=94.17 E-value=0.15 Score=51.41 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
|.|.|++|.||||+|+.+.+.+
T Consensus 4 i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 4 IIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998765
No 380
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.15 E-value=0.11 Score=48.85 Aligned_cols=81 Identities=10% Similarity=0.187 Sum_probs=27.6
Q ss_pred ccCCcccceeeccCccccccCc-ccccCCCCCEEecCCCCCCCccCCccCCCCCCCEEeccCCCCCCCcCcccCCCCCCc
Q 001603 578 LGSMKDLMELFLDGTSIAEVPS-SIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLE 656 (1046)
Q Consensus 578 ~~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~Ls~c~~l~~~~~~~~~l~~L~ 656 (1046)
+..+++|+.+.+..+ +..++. .+..+++|+.+.+.+ .....-...+..+++|+.+.+..+ ....-...+..+ +|+
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~ 106 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLK 106 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--
T ss_pred ccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cce
Confidence 444444444444442 333332 234444455555543 221122233444555555555432 111112234444 555
Q ss_pred eeeccC
Q 001603 657 ELDISG 662 (1046)
Q Consensus 657 ~L~Ls~ 662 (1046)
.+.+..
T Consensus 107 ~i~~~~ 112 (129)
T PF13306_consen 107 EINIPS 112 (129)
T ss_dssp EEE-TT
T ss_pred EEEECC
Confidence 555543
No 381
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.15 E-value=0.087 Score=51.62 Aligned_cols=113 Identities=20% Similarity=0.260 Sum_probs=59.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLR 80 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 80 (1046)
+++|+|..|.|||||++.+...+.. ..+.+++.... ... .. ... ....+.-.... .......-.+...+.
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~~-~~~-~~-~~~----~~~~i~~~~ql--S~G~~~r~~l~~~l~ 96 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGKD-IAK-LP-LEE----LRRRIGYVPQL--SGGQRQRVALARALL 96 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEE-ccc-CC-HHH----HHhceEEEeeC--CHHHHHHHHHHHHHh
Confidence 4789999999999999999875543 45556654221 100 00 111 11111100000 111122223455555
Q ss_pred CCeEEEEEecCCCh------HHHHHHhhccCCCCCCCEEEEEeCChhhHHH
Q 001603 81 QKKVLLVIDDVADV------EQLQNLARKRDWFGPGSKIVITTRDKQLLVA 125 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~ 125 (1046)
.++=++++|+.... ..+..+..... ..+..||++|-+......
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAEL 145 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHH
Confidence 66788999998532 22333333222 225678888888776554
No 382
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.15 E-value=0.083 Score=64.18 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=30.5
Q ss_pred HHHHhhcCCeEEEEEecCCC----h--HH-HHHHhhccCCCCCCCEEEEEeCChhhHH
Q 001603 74 IIGSRLRQKKVLLVIDDVAD----V--EQ-LQNLARKRDWFGPGSKIVITTRDKQLLV 124 (1046)
Q Consensus 74 ~i~~~L~~kr~LlVlDdv~~----~--~~-~~~l~~~~~~~~~gs~IiiTTR~~~~~~ 124 (1046)
.|.+.+-.++=+++||..-. . .+ .+.+... ....+.|+||=|...+..
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~---~~~~T~I~IaHRl~ti~~ 673 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNLLQI---LQGRTVIIIAHRLSTIRS 673 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHH---hcCCeEEEEEccchHhhh
Confidence 46677778888999999732 1 11 2333322 235688899989876543
No 383
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.14 E-value=0.081 Score=57.68 Aligned_cols=86 Identities=22% Similarity=0.219 Sum_probs=53.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcccc--ceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhh
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEF--DGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL 79 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 79 (1046)
|.|.|..|.||||+++++.+.+.... ...+.+.+..|..-..... +.-... .......+.++..|
T Consensus 135 ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~----------v~~~~~---~~~~~~~~~l~~aL 201 (299)
T TIGR02782 135 ILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNV----------VQLRTS---DDAISMTRLLKATL 201 (299)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCE----------EEEEec---CCCCCHHHHHHHHh
Confidence 67999999999999999998876532 2233444333321111000 000000 01114557788888
Q ss_pred cCCeEEEEEecCCChHHHHHH
Q 001603 80 RQKKVLLVIDDVADVEQLQNL 100 (1046)
Q Consensus 80 ~~kr~LlVlDdv~~~~~~~~l 100 (1046)
+..+=.||+..+...+.++.+
T Consensus 202 R~~pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 202 RLRPDRIIVGEVRGGEALDLL 222 (299)
T ss_pred cCCCCEEEEeccCCHHHHHHH
Confidence 888888999999988876544
No 384
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.11 E-value=0.041 Score=55.95 Aligned_cols=21 Identities=48% Similarity=0.684 Sum_probs=19.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYD 21 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~ 21 (1046)
++||+|.+|.||||||+.++-
T Consensus 35 ~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred EEEEEcCCCCCHHHHHHHHhc
Confidence 479999999999999999986
No 385
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.05 E-value=1.4 Score=45.70 Aligned_cols=135 Identities=11% Similarity=0.209 Sum_probs=76.0
Q ss_pred EEEEecCCCh--HHHHHHhhccCCCCCCCEEEEEeCChhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCCCCchH
Q 001603 85 LLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEY 162 (1046)
Q Consensus 85 LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~ 162 (1046)
++|+-.+|+. +.-.+|.+...-....+|+|+....-.-....--...-.+++.+.+++|-...++..+-+..-..+
T Consensus 130 vvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp-- 207 (351)
T KOG2035|consen 130 VVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP-- 207 (351)
T ss_pred EEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--
Confidence 5666777654 223344444333456678876544322111111111126899999999999999888755554333
Q ss_pred HHHHHHHHHHhCCCchHHHHHhhhcC--------C---CChHHHHHHHHHHh-----cCCCCchHHHHhhccccc
Q 001603 163 VELSKRVLKYAGGLPLALTVLGSFLN--------G---RSVDLWRSTLKRLK-----KEPPNRIINILQISFDGL 221 (1046)
Q Consensus 163 ~~~~~~i~~~~~GlPLal~~~~~~L~--------~---~~~~~w~~~l~~l~-----~~~~~~i~~~l~~sy~~L 221 (1046)
.+++.+|+++++|+-.-...+--..+ + -..-+|+.++++.. +.....+.++-..=|+-|
T Consensus 208 ~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 208 KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 58899999999997543322222111 1 14568998887753 233344444444445444
No 386
>PRK14527 adenylate kinase; Provisional
Probab=94.04 E-value=0.12 Score=52.60 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=20.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
+|.|.|++|.||||+|+.++++.
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 387
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.02 E-value=0.055 Score=55.36 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=26.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
+|+|+|++|.||||||+.+...+...-...+++.
T Consensus 26 ~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 26 VLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 5899999999999999999987654323345553
No 388
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.01 E-value=0.23 Score=50.45 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDL 22 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~ 22 (1046)
+++|+|..|.|||||++.++..
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999863
No 389
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.99 E-value=0.08 Score=65.32 Aligned_cols=113 Identities=13% Similarity=0.140 Sum_probs=59.1
Q ss_pred CCeEEEEEecCCCh---HHHH----HHhhccCCCCCCCEEEEEeCChhhHHHhcCCCc-ceEecCCCChHHHHHHHHHhh
Q 001603 81 QKKVLLVIDDVADV---EQLQ----NLARKRDWFGPGSKIVITTRDKQLLVAHEVDEE-HIYNLEVLSNDEALQLFSMKA 152 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~---~~~~----~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~-~~~~l~~L~~~ea~~Lf~~~a 152 (1046)
.++-|+++|..-.. .+-. .+...+. ..|+.+|+||-+..+......... ..+.|. ++. +... | .+-
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~-p-~Yk 474 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS-P-TYK 474 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc-e-EEE
Confidence 47899999998542 2222 2222222 357899999999876443221110 011111 111 1111 1 111
Q ss_pred cCCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhcCCCChHHHHHHHHHHh
Q 001603 153 FKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSFLNGRSVDLWRSTLKRLK 203 (1046)
Q Consensus 153 ~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~~~~~w~~~l~~l~ 203 (1046)
+....+.. .-+-.|++++ |+|-.+.--|..+.+....+++..+.++.
T Consensus 475 l~~G~~g~---S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 475 LLKGIPGE---SYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred ECCCCCCC---cHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11122222 2356677776 89999988888877655556666665554
No 390
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.99 E-value=0.049 Score=52.63 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
||.|.|+.|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999865
No 391
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.97 E-value=1.4 Score=47.75 Aligned_cols=94 Identities=14% Similarity=0.164 Sum_probs=57.5
Q ss_pred CCeEEEEEecCCChH--HHHHHhhccCCCCCCCEEEEEeCC-hhhHHHhcCCCcceEecCCCChHHHHHHHHHhhcCCCC
Q 001603 81 QKKVLLVIDDVADVE--QLQNLARKRDWFGPGSKIVITTRD-KQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 157 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 157 (1046)
+++=++|+|+++... ....+...+....+.+.+|++|.+ ..+..... .....+++.+++.++..+.+.... .
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~-SRc~~~~f~~l~~~~l~~~l~~~~----~ 163 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIV-SRCQVFNVKEPDQQKILAKLLSKN----K 163 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHH-hCeEEEECCCCCHHHHHHHHHHcC----C
Confidence 466788899997653 355566555555677777765544 44443322 223489999999999988776541 1
Q ss_pred CCchHHHHHHHHHHHhCCCchHHHHH
Q 001603 158 PMGEYVELSKRVLKYAGGLPLALTVL 183 (1046)
Q Consensus 158 ~~~~~~~~~~~i~~~~~GlPLal~~~ 183 (1046)
. .+.+..++..++|.=-|+..+
T Consensus 164 -~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 164 -E---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred -C---hhHHHHHHHHcCCHHHHHHHH
Confidence 1 133556666677633455543
No 392
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.17 Score=51.14 Aligned_cols=60 Identities=22% Similarity=0.170 Sum_probs=37.0
Q ss_pred hHHHHHHhhcCCeEEEEEecCCChHHHHHH---hhccC-CCCCCCEEEEEeCChhhHHHhcCCC
Q 001603 71 GINIIGSRLRQKKVLLVIDDVADVEQLQNL---ARKRD-WFGPGSKIVITTRDKQLLVAHEVDE 130 (1046)
Q Consensus 71 ~~~~i~~~L~~kr~LlVlDdv~~~~~~~~l---~~~~~-~~~~gs~IiiTTR~~~~~~~~~~~~ 130 (1046)
....|.+.+--++-+.|||..|+.-+++++ ..... -..+|+-++|.|-.+.++.....+.
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~ 214 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDK 214 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCE
Confidence 345566666677889999999875333322 22211 1245777888888888776654333
No 393
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.96 E-value=0.062 Score=51.68 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=24.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHcccccee
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGS 30 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~ 30 (1046)
||-..|.+|.||||||.++++++...-..+
T Consensus 25 viW~TGLSGsGKSTiA~ale~~L~~~G~~~ 54 (197)
T COG0529 25 VIWFTGLSGSGKSTIANALEEKLFAKGYHV 54 (197)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 467889999999999999999887664433
No 394
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.94 E-value=0.16 Score=52.12 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDL 22 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~ 22 (1046)
+++|+|..|.|||||++.++..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998875
No 395
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.93 E-value=0.13 Score=59.12 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
+|+|+|++|+||||++.+++..+..+
T Consensus 352 vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 58999999999999999988765443
No 396
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.93 E-value=0.048 Score=58.53 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
|.++|+.|+|||++++.......
T Consensus 36 vLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 36 VLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp EEEESSTTSSHHHHHHHHHHCST
T ss_pred EEEECCCCCchhHHHHhhhccCC
Confidence 67999999999999999876543
No 397
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.13 Score=56.25 Aligned_cols=84 Identities=20% Similarity=0.221 Sum_probs=47.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHh-hccCcccccccchHHHHHHhh
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLL-KLADISIWNVDDGINIIGSRL 79 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~~~~~~~~~~~~~~~i~~~L 79 (1046)
+|.|-|-+|||||||..+++.++..+- .+.++. .|.+ ..++. --..+++ ...+..........+.++..-
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs--GEES-----~~Qik-lRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS--GEES-----LQQIK-LRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe--CCcC-----HHHHH-HHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 478999999999999999999887765 556654 2211 22211 1123333 112221111222222333333
Q ss_pred cCCeEEEEEecCCC
Q 001603 80 RQKKVLLVIDDVAD 93 (1046)
Q Consensus 80 ~~kr~LlVlDdv~~ 93 (1046)
+.++-++|+|.+..
T Consensus 166 ~~~p~lvVIDSIQT 179 (456)
T COG1066 166 QEKPDLVVIDSIQT 179 (456)
T ss_pred hcCCCEEEEeccce
Confidence 46888999999854
No 398
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.91 E-value=0.069 Score=52.69 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISH 25 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~ 25 (1046)
|.|.|..|+|||||++.+.+.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999998754
No 399
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.91 E-value=0.46 Score=59.84 Aligned_cols=194 Identities=19% Similarity=0.228 Sum_probs=95.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcc-cc---ceeEEEEe--chhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISH-EF---DGSTFLAN--VREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINII 75 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~-~f---~~~~~~~~--~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i 75 (1046)
+.|+|..|.||||....++-.... ++ +..+|+.. ......... -..+...+...+..... ........
T Consensus 225 ~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~-q~~~~~~l~~~~~~~~~-----~~~~~~~~ 298 (824)
T COG5635 225 LLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEK-QLSLIDYLAEELFSQGI-----AKQLIEAH 298 (824)
T ss_pred eeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHh-hccHHHHHHHHHhccCC-----cchhhHHH
Confidence 579999999999999888764322 22 22333321 111111111 00222222222222211 11222222
Q ss_pred HHhhcCCeEEEEEecCCChHH------HHHHhhccCCCCCCCEEEEEeCChhhHHHhcCCCcceEecCCCChHHHHHH--
Q 001603 76 GSRLRQKKVLLVIDDVADVEQ------LQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQL-- 147 (1046)
Q Consensus 76 ~~~L~~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea~~L-- 147 (1046)
.+.++..++++++|++|.... ...+-...+ .-+.+++|+|+|....-.....-. .+++..+.++.-.+.
T Consensus 299 ~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~-~~~~~~~iltcR~~~~~~~~~~f~--~~ei~~~~~~~i~~~~~ 375 (824)
T COG5635 299 QELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQ-EYPDAQVLLTCRPDTYKEEFKGFA--VFEIYKFLDLQINQFIL 375 (824)
T ss_pred HHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhh-hccCCeEEEEeccchhhhhhhhhh--hccchhhhHHHHHHHHH
Confidence 578889999999999987532 222111112 235899999999765433222111 455555555543321
Q ss_pred ------HHHhhcCCCCCC-chHH-HH---HHHHHHHhCCCchHHHHHhhhcC------CCChHHHHHHHHHHhc
Q 001603 148 ------FSMKAFKTRQPM-GEYV-EL---SKRVLKYAGGLPLALTVLGSFLN------GRSVDLWRSTLKRLKK 204 (1046)
Q Consensus 148 ------f~~~a~~~~~~~-~~~~-~~---~~~i~~~~~GlPLal~~~~~~L~------~~~~~~w~~~l~~l~~ 204 (1046)
+....++..... ..+. .+ ..+-++.....|++|.+.+..-. ....+-++.+++.+-.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~ 449 (824)
T COG5635 376 YQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLG 449 (824)
T ss_pred HHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHh
Confidence 111122221111 0111 11 12334445888999988884332 2345666666666544
No 400
>PRK05922 type III secretion system ATPase; Validated
Probab=93.91 E-value=0.13 Score=58.37 Aligned_cols=87 Identities=17% Similarity=0.207 Sum_probs=46.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCccc-cccc----------c
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISI-WNVD----------D 70 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~-~~~~----------~ 70 (1046)
++|.|..|+|||||++.+...... +...+.. +.+ ....+.+...+...........-+ ...+ .
T Consensus 160 igI~G~nG~GKSTLL~~Ia~~~~~--d~gvi~l-iGe---rg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 160 IGVFSEPGSGKSSLLSTIAKGSKS--TINVIAL-IGE---RGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred EEEECCCCCChHHHHHHHhccCCC--CceEEEE-eCC---CCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 789999999999999988875432 2233322 111 111134444444433221111100 0111 1
Q ss_pred hHHHHHHhh--cCCeEEEEEecCCCh
Q 001603 71 GINIIGSRL--RQKKVLLVIDDVADV 94 (1046)
Q Consensus 71 ~~~~i~~~L--~~kr~LlVlDdv~~~ 94 (1046)
..-.+.+++ +++++|+++||+-..
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhHH
Confidence 122345555 589999999999553
No 401
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=93.90 E-value=1.5 Score=49.18 Aligned_cols=105 Identities=15% Similarity=0.068 Sum_probs=65.7
Q ss_pred eEEEEEecCCCh--------HHHHHHhhccCCCCCCCEEEEEeCChhhHH----HhcCCCcceEecCCCChHHHHHHHHH
Q 001603 83 KVLLVIDDVADV--------EQLQNLARKRDWFGPGSKIVITTRDKQLLV----AHEVDEEHIYNLEVLSNDEALQLFSM 150 (1046)
Q Consensus 83 r~LlVlDdv~~~--------~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~----~~~~~~~~~~~l~~L~~~ea~~Lf~~ 150 (1046)
|=+||||++... +.+.+++..+- ..+-..||++|-+..... .+.-..-+.+.+...+.+-|.++...
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 678999998532 11222222222 135578898888765433 23222335789999999999999988
Q ss_pred hhcCCCCC-------------C-----chHHHHHHHHHHHhCCCchHHHHHhhhcC
Q 001603 151 KAFKTRQP-------------M-----GEYVELSKRVLKYAGGLPLALTVLGSFLN 188 (1046)
Q Consensus 151 ~a~~~~~~-------------~-----~~~~~~~~~i~~~~~GlPLal~~~~~~L~ 188 (1046)
+....... . .....-....++.+||=-.-|..+++.++
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRik 283 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIK 283 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 87543110 0 12334455677888888888888887776
No 402
>PRK06217 hypothetical protein; Validated
Probab=93.90 E-value=0.045 Score=55.25 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
|+|.|++|.||||+|+++.+.+.
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999998753
No 403
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.88 E-value=0.13 Score=59.60 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=26.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4679999999999999999887654333456665
No 404
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.83 E-value=0.15 Score=59.66 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=37.2
Q ss_pred HHHhhcCCeEEEEEecC------CChHHHHHHhhccCCCCCCCEEEEEeCChhhHHHhcCCCcceEecCC
Q 001603 75 IGSRLRQKKVLLVIDDV------ADVEQLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEV 138 (1046)
Q Consensus 75 i~~~L~~kr~LlVlDdv------~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~ 138 (1046)
+...+-.++=++|||.= +..+++++.+..++ ..||+.|-|+....... .. ++.+++
T Consensus 450 La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-----Gtvl~VSHDr~Fl~~va-~~--i~~~~~ 511 (530)
T COG0488 450 LAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-----GTVLLVSHDRYFLDRVA-TR--IWLVED 511 (530)
T ss_pred HHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-----CeEEEEeCCHHHHHhhc-ce--EEEEcC
Confidence 44455678889999975 34455666555533 45888899999877654 23 677765
No 405
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.82 E-value=0.18 Score=55.28 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
+|+++|++|+||||++..++..++.+
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 58999999999999999999877654
No 406
>PRK08149 ATP synthase SpaL; Validated
Probab=93.82 E-value=0.15 Score=57.71 Aligned_cols=88 Identities=19% Similarity=0.224 Sum_probs=47.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHh-hccCccc--ccc--------c
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLL-KLADISI--WNV--------D 69 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~~~~~~--~~~--------~ 69 (1046)
.++|+|..|+|||||+..++..... +..++. .+. .+...+.++.++.+.... ....... .+. .
T Consensus 153 ~i~I~G~sG~GKTTLl~~i~~~~~~--dv~v~g-~Ig---~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 153 RMGIFASAGCGKTSLMNMLIEHSEA--DVFVIG-LIG---ERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred EEEEECCCCCChhHHHHHHhcCCCC--CeEEEE-EEe---eCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 3799999999999999988764322 222322 222 222225555555554321 1000000 011 0
Q ss_pred chHHHHHHhh--cCCeEEEEEecCCCh
Q 001603 70 DGINIIGSRL--RQKKVLLVIDDVADV 94 (1046)
Q Consensus 70 ~~~~~i~~~L--~~kr~LlVlDdv~~~ 94 (1046)
.....+.+++ ++|.+||++||+-..
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 1122344555 589999999998543
No 407
>PRK13949 shikimate kinase; Provisional
Probab=93.79 E-value=0.051 Score=53.84 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
|.|+|+.|.||||+|+.+++.+.
T Consensus 4 I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998764
No 408
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.78 E-value=0.12 Score=58.52 Aligned_cols=86 Identities=21% Similarity=0.188 Sum_probs=46.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCccc---cccc--------c
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISI---WNVD--------D 70 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~---~~~~--------~ 70 (1046)
++|.|..|+|||||++.++..... +..++. -+.+ +...+.++.+..+.+-+....... .+.. .
T Consensus 161 i~I~G~sG~GKTtLL~~I~~~~~~--d~~v~~-~iGE---R~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~ 234 (442)
T PRK08927 161 MGIFAGSGVGKSVLLSMLARNADA--DVSVIG-LIGE---RGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAY 234 (442)
T ss_pred EEEECCCCCCHHHHHHHHHhccCC--CEEEEE-EEec---CcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHH
Confidence 789999999999999988875433 333433 2322 221144444433332110000000 1110 1
Q ss_pred hHHHHHHhh--cCCeEEEEEecCCC
Q 001603 71 GINIIGSRL--RQKKVLLVIDDVAD 93 (1046)
Q Consensus 71 ~~~~i~~~L--~~kr~LlVlDdv~~ 93 (1046)
..-.+.+++ +++.+|+++||+-.
T Consensus 235 ~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 235 LTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 112245555 58999999999954
No 409
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.78 E-value=0.17 Score=55.74 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
++++.|+.|.||||+++.+.+.+.
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999998775
No 410
>PRK01184 hypothetical protein; Provisional
Probab=93.74 E-value=0.12 Score=52.11 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=17.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYD 21 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~ 21 (1046)
+|+|+|+.|.||||+|+ +++
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHH
Confidence 58999999999999987 444
No 411
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=93.72 E-value=0.2 Score=57.39 Aligned_cols=89 Identities=24% Similarity=0.269 Sum_probs=49.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcccc-ceeEEEEechhhhcccCCHHHHHHHHHHHHh-hcc------Cccc---cccc-
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEF-DGSTFLANVREKSEKEGSVVSLQKQLLSDLL-KLA------DISI---WNVD- 69 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~~------~~~~---~~~~- 69 (1046)
++|.|.+|+|||||+..+...+.... +.++|. -+.+-. ..+.++.+.++..-. ... .... .+..
T Consensus 164 ~gIfgg~GvGKs~L~~~~~~~~~~~~~dv~V~~-lIGERg---rEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~ 239 (494)
T CHL00060 164 IGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVGERT---REGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 239 (494)
T ss_pred EeeecCCCCChhHHHHHHHHHHHHhcCCeEEEE-EeccCc---hHHHHHHHHHHhcCccccCcccccceEEEEECCCCCH
Confidence 68999999999999998887643322 444444 343322 225556655554110 000 0000 1111
Q ss_pred -------chHHHHHHhhc--CC-eEEEEEecCCCh
Q 001603 70 -------DGINIIGSRLR--QK-KVLLVIDDVADV 94 (1046)
Q Consensus 70 -------~~~~~i~~~L~--~k-r~LlVlDdv~~~ 94 (1046)
.....+.++++ ++ .+||++||+-..
T Consensus 240 ~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 240 GARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 11233667774 44 999999999543
No 412
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.71 E-value=0.19 Score=49.66 Aligned_cols=21 Identities=38% Similarity=0.355 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDL 22 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~ 22 (1046)
|.|+|..|+||+.+|+.+++.
T Consensus 25 VlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 25 VLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEcCCCCcHHHHHHHHHHh
Confidence 789999999999999999983
No 413
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=93.69 E-value=0.16 Score=58.03 Aligned_cols=88 Identities=17% Similarity=0.143 Sum_probs=46.5
Q ss_pred EEEEcCCCCcHHHHHH-HHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCccc---ccccch------
Q 001603 2 MGIWGMGGLGKTTLAR-VAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISI---WNVDDG------ 71 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~---~~~~~~------ 71 (1046)
++|.|..|+||||||. .+.+. + .-+..|.+..+.+. ...+.++.+.+...=......-. .+....
T Consensus 144 ~~I~g~~g~GKt~Lal~~I~~q-~-~~dv~cV~~~IGer---~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ap 218 (485)
T CHL00059 144 ELIIGDRQTGKTAVATDTILNQ-K-GQNVICVYVAIGQK---ASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAP 218 (485)
T ss_pred EEeecCCCCCHHHHHHHHHHhc-c-cCCeEEEEEEecCC---chHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHHH
Confidence 6899999999999964 44443 2 33555444444432 22255555555443111000000 011001
Q ss_pred --HHHHHHhh--cCCeEEEEEecCCCh
Q 001603 72 --INIIGSRL--RQKKVLLVIDDVADV 94 (1046)
Q Consensus 72 --~~~i~~~L--~~kr~LlVlDdv~~~ 94 (1046)
...+.+++ +++++|+|+||+-..
T Consensus 219 ~~a~aiAEyfr~~G~~VLlv~DdlTr~ 245 (485)
T CHL00059 219 YTGAALAEYFMYRGRHTLIIYDDLSKQ 245 (485)
T ss_pred HHHhhHHHHHHHcCCCEEEEEcChhHH
Confidence 12244444 479999999999653
No 414
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.68 E-value=0.055 Score=54.14 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=21.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHcc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISH 25 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~ 25 (1046)
+|.+.|++|.||||+|+++.+....
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5889999999999999999887543
No 415
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.67 E-value=0.17 Score=57.91 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=24.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHc--cccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLIS--HEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~--~~f~~~~~~~ 34 (1046)
+|+++|++|+||||++..++..+. ..-..+.++.
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 478999999999999998877654 3323344544
No 416
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=93.66 E-value=0.15 Score=54.86 Aligned_cols=101 Identities=23% Similarity=0.351 Sum_probs=60.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHh-hccCc--ccccccch-------
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLL-KLADI--SIWNVDDG------- 71 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~~~~--~~~~~~~~------- 71 (1046)
||+.|-+|+|||-+.+++-+.+..+..+...+..+.|-... -.++..++-+.-. ..... ..++..-+
T Consensus 150 iGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFaGvGERtRE---GndLy~Em~es~vl~ktalv~gQMNEpPGaR~RVal 226 (468)
T COG0055 150 IGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTRE---GNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVAL 226 (468)
T ss_pred eeeeccCCccceeeHHHHHHHHHHHcCCeEEEEeccccccc---hHHHHHHHHhcCCCCceeEEEeecCCCCcceeeehh
Confidence 79999999999999999999888777777776766664332 2344444433211 10000 00111111
Q ss_pred -HHHHHHhhc---CCeEEEEEecCCChH----HHHHHhhccC
Q 001603 72 -INIIGSRLR---QKKVLLVIDDVADVE----QLQNLARKRD 105 (1046)
Q Consensus 72 -~~~i~~~L~---~kr~LlVlDdv~~~~----~~~~l~~~~~ 105 (1046)
---+.++++ ++-+|+.+||+..-. +...+++..+
T Consensus 227 tGlT~AEyfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~P 268 (468)
T COG0055 227 TGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMP 268 (468)
T ss_pred hhhhHHHHhhcccCCeEEEEehhhhHHhhcchHHHHHhccCc
Confidence 011334443 689999999996543 3556666554
No 417
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.66 E-value=0.32 Score=57.02 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=24.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFL 33 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 33 (1046)
++.+.|++|+||||.++.+++++. |+..-|.
T Consensus 47 iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~ 77 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKELG--FEVQEWI 77 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CeeEEec
Confidence 467899999999999999998753 4444454
No 418
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.65 E-value=0.058 Score=52.66 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
+++|.|++|+|||||+++++++.
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999999865
No 419
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.62 E-value=0.06 Score=52.55 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
|.|+|++|.||||+|+.+.+.+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999988763
No 420
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.61 E-value=0.082 Score=50.39 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=26.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHcc-ccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISH-EFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~ 34 (1046)
+|+|+|..|+|||||++.+.+.+.. .+...++.+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 5899999999999999999998764 455444444
No 421
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=0.067 Score=62.16 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=24.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFD 28 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~ 28 (1046)
+++.+|++|||||++|+.++..+-.+|-
T Consensus 440 IlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 440 ILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred EEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 5789999999999999999998777653
No 422
>PRK04328 hypothetical protein; Provisional
Probab=93.61 E-value=0.17 Score=53.77 Aligned_cols=34 Identities=15% Similarity=0.067 Sum_probs=24.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
++.|.|.+|.|||+||.++......+-+.++|+.
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4679999999999999886654333345566665
No 423
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.60 E-value=0.21 Score=52.55 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=25.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
++.|.|.+|.||||+|.++......+-..++|+.
T Consensus 22 ~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 22 FVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 4789999999999999887654333345566766
No 424
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.59 E-value=0.049 Score=54.76 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
+|+|.|+.|+||||+|+.+...+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 479999999999999999988654
No 425
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=0.34 Score=59.34 Aligned_cols=78 Identities=14% Similarity=0.245 Sum_probs=49.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHh-hccCcccccccchHHHHHHhhc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLL-KLADISIWNVDDGINIIGSRLR 80 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~~~~~~~~~~~~~~~i~~~L~ 80 (1046)
..+.|+.|+|||-||++++..+.+..+..+-++ +.+.++ ..++. ...+. -..+....+.+.++
T Consensus 594 flflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-----------mse~~e--vskligsp~gy---vG~e~gg~Lteavr 657 (898)
T KOG1051|consen 594 FLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-----------MSEFQE--VSKLIGSPPGY---VGKEEGGQLTEAVK 657 (898)
T ss_pred EEEECCCchhHHHHHHHHHHHHcCCccceEEec-----------hhhhhh--hhhccCCCccc---ccchhHHHHHHHHh
Confidence 357899999999999999998866655555444 334444 33332 22221 12234457777887
Q ss_pred CCeE-EEEEecCCChH
Q 001603 81 QKKV-LLVIDDVADVE 95 (1046)
Q Consensus 81 ~kr~-LlVlDdv~~~~ 95 (1046)
.++| +|+||||+..+
T Consensus 658 rrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 658 RRPYSVVLFEEIEKAH 673 (898)
T ss_pred cCCceEEEEechhhcC
Confidence 7765 55679998754
No 426
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.56 E-value=0.053 Score=55.00 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
+|+|.|++|+||||+|+.+.+.+
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998764
No 427
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.56 E-value=0.14 Score=59.22 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=26.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
++.|.|.+|+|||||+.+++..+..+-..+.|+.
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4789999999999999998776654433456665
No 428
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.55 E-value=0.17 Score=57.53 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDL 22 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~ 22 (1046)
.++|+|..|+|||||++.+...
T Consensus 167 ri~I~G~SGsGKTTLL~~Ia~l 188 (450)
T PRK06002 167 RIGIFAGSGVGKSTLLAMLARA 188 (450)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999999888764
No 429
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=93.54 E-value=0.86 Score=53.47 Aligned_cols=167 Identities=17% Similarity=0.195 Sum_probs=95.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHc-----c---ccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLIS-----H---EFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGIN 73 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~-----~---~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~ 73 (1046)
+-|.|.+|.|||..+..|.+.++ . .|+. +.+...+ -....++...|+.++.... ..+....+
T Consensus 425 mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~-----l~~~~~~Y~~I~~~lsg~~----~~~~~al~ 494 (767)
T KOG1514|consen 425 MYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLR-----LASPREIYEKIWEALSGER----VTWDAALE 494 (767)
T ss_pred EEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEccee-----ecCHHHHHHHHHHhcccCc----ccHHHHHH
Confidence 56999999999999999998553 1 2332 3333222 2226777888888776432 23344556
Q ss_pred HHHHhhc-----CCeEEEEEecCCChH-----HHHHHhhccCCC-CCCCEEEEEeCChh-----------hHHHhcCCCc
Q 001603 74 IIGSRLR-----QKKVLLVIDDVADVE-----QLQNLARKRDWF-GPGSKIVITTRDKQ-----------LLVAHEVDEE 131 (1046)
Q Consensus 74 ~i~~~L~-----~kr~LlVlDdv~~~~-----~~~~l~~~~~~~-~~gs~IiiTTR~~~-----------~~~~~~~~~~ 131 (1046)
.+..++. .+..+|++|++|..- .+..+ ++|. .++||++|-+=... +....+.
T Consensus 495 ~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~---fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~--- 568 (767)
T KOG1514|consen 495 ALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNI---FDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGL--- 568 (767)
T ss_pred HHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHH---hcCCcCCCCceEEEEecccccCHHHHhccchhhhccc---
Confidence 6666664 567899999987542 23333 3343 47788766543211 1111121
Q ss_pred ceEecCCCChHHHHHHHHHhhcCCCCCC-chHHHHHHHHHHHhCCCchHHHHHh
Q 001603 132 HIYNLEVLSNDEALQLFSMKAFKTRQPM-GEYVELSKRVLKYAGGLPLALTVLG 184 (1046)
Q Consensus 132 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlPLal~~~~ 184 (1046)
..+..++.++++-.+....+..+...-. ...+-++++|+.--|..-.|+.+.-
T Consensus 569 tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~ 622 (767)
T KOG1514|consen 569 TRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICR 622 (767)
T ss_pred eeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHH
Confidence 2577888888888888777664432211 2222334455444444455554443
No 430
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.54 E-value=0.33 Score=55.07 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=22.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
+|.++|..|+||||+|.+++..++.+
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 58999999999999999888766544
No 431
>PRK14531 adenylate kinase; Provisional
Probab=93.50 E-value=0.25 Score=49.73 Aligned_cols=22 Identities=27% Similarity=0.164 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
|.|.|++|.||||+|+.+++.+
T Consensus 5 i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 5 LLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998875
No 432
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.50 E-value=0.74 Score=50.55 Aligned_cols=48 Identities=19% Similarity=0.112 Sum_probs=34.1
Q ss_pred eEecCCCChHHHHHHHHHhhcCCCCCC-chHHHHHHHHHHHhCCCchHH
Q 001603 133 IYNLEVLSNDEALQLFSMKAFKTRQPM-GEYVELSKRVLKYAGGLPLAL 180 (1046)
Q Consensus 133 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlPLal 180 (1046)
.++|++++.+|+..++.-++-..--.. ...+...+++....+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 689999999999999988875443322 233345566666679999654
No 433
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.49 E-value=0.22 Score=53.83 Aligned_cols=100 Identities=21% Similarity=0.178 Sum_probs=58.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCccc-ccccchHHHHHHhhc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISI-WNVDDGINIIGSRLR 80 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~-~~~~~~~~~i~~~L~ 80 (1046)
|.|.|..|.||||+++++.+.+...-...+-+.+..|..-.. .. ...... .+.....+.++..|+
T Consensus 130 ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~-------------~~-~~~~~~~~~~~~~~~~l~~~LR 195 (270)
T PF00437_consen 130 ILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPG-------------PN-QIQIQTRRDEISYEDLLKSALR 195 (270)
T ss_dssp EEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SC-------------SS-EEEEEEETTTBSHHHHHHHHTT
T ss_pred EEEECCCccccchHHHHHhhhccccccceEEeccccceeecc-------------cc-eEEEEeecCcccHHHHHHHHhc
Confidence 789999999999999999987665512334444333321110 00 000000 133455677888899
Q ss_pred CCeEEEEEecCCChHHHHHHhhccCCCCCCCEE-EEEeCC
Q 001603 81 QKKVLLVIDDVADVEQLQNLARKRDWFGPGSKI-VITTRD 119 (1046)
Q Consensus 81 ~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~I-iiTTR~ 119 (1046)
..+=.+|++.+.+.+.++.+... ..|..+ +-|.-.
T Consensus 196 ~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha 231 (270)
T PF00437_consen 196 QDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHA 231 (270)
T ss_dssp S--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-
T ss_pred CCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeec
Confidence 88889999999998887764433 357777 444443
No 434
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.48 E-value=0.4 Score=48.21 Aligned_cols=107 Identities=18% Similarity=0.153 Sum_probs=54.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccc---cce-eEEEEec-hhhhcccCCHHHHHHHHHHHHhhccCcccccc-cchHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHE---FDG-STFLANV-REKSEKEGSVVSLQKQLLSDLLKLADISIWNV-DDGINII 75 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~---f~~-~~~~~~~-~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~-~~~~~~i 75 (1046)
..|.|++|+|||||.+.++.-++.. |.. .+-+.+- .+......... +.+....+. . -+. .....++
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvp--q~~~g~R~d----V--ld~cpk~~gmm 211 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVP--QHGRGRRMD----V--LDPCPKAEGMM 211 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCc--hhhhhhhhh----h--cccchHHHHHH
Confidence 3589999999999999999866543 432 2222221 11111000011 111111111 0 010 0111111
Q ss_pred HHhhcCCeEEEEEecCCChHHHHHHhhccCCCCCCCEEEEEeCC
Q 001603 76 GSRLRQKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRD 119 (1046)
Q Consensus 76 ~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~ 119 (1046)
...-.-.+=.+|+|.+...++..++.... ..|-++|.|.--
T Consensus 212 maIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG 252 (308)
T COG3854 212 MAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHG 252 (308)
T ss_pred HHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeecc
Confidence 11112356688999999888776666553 467777777653
No 435
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.47 E-value=0.13 Score=58.33 Aligned_cols=87 Identities=22% Similarity=0.239 Sum_probs=46.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcc-c--ccccch-------
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADIS-I--WNVDDG------- 71 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~-~--~~~~~~------- 71 (1046)
++|.|..|+|||||++.++..... +.+++. .+.+- ...+.++.+..+..-....... . .+....
T Consensus 165 ~~I~G~sG~GKStLl~~Ia~~~~~--dv~V~~-liGER---grEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (439)
T PRK06936 165 MGIFAAAGGGKSTLLASLIRSAEV--DVTVLA-LIGER---GREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGF 238 (439)
T ss_pred EEEECCCCCChHHHHHHHhcCCCC--CEEEEE-EEccC---cHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHH
Confidence 799999999999999999875433 333333 33332 1114444443332211000000 0 111111
Q ss_pred -HHHHHHhh--cCCeEEEEEecCCCh
Q 001603 72 -INIIGSRL--RQKKVLLVIDDVADV 94 (1046)
Q Consensus 72 -~~~i~~~L--~~kr~LlVlDdv~~~ 94 (1046)
...+.+++ +++++|+++||+-..
T Consensus 239 ~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 239 VATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhHH
Confidence 12245555 589999999999543
No 436
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.46 E-value=0.059 Score=52.98 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=22.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHcc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISH 25 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~ 25 (1046)
+++|+|..|.|||||++.+...+..
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHHHhh
Confidence 5899999999999999999987765
No 437
>COG4240 Predicted kinase [General function prediction only]
Probab=93.44 E-value=0.12 Score=51.50 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=46.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHcccc-ceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCc-ccccccchHHHHHHh
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEF-DGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADI-SIWNVDDGINIIGSR 78 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~-~~~~~~~~~~~i~~~ 78 (1046)
+|||.|+-|.||||++..++..+.+.. +..... .+.+.+.++.+-..+.++. ..+....+. ...++.-+.+.+...
T Consensus 52 i~gisGpQGSGKStls~~i~~~L~~kg~ert~~l-SLDDlYlthadrl~La~q~-npllq~RGlpGTHD~tlglnVLnai 129 (300)
T COG4240 52 IVGISGPQGSGKSTLSALIVRLLAAKGLERTATL-SLDDLYLTHADRLRLARQV-NPLLQTRGLPGTHDPTLGLNVLNAI 129 (300)
T ss_pred EEEeecCCCCchhhHHHHHHHHHHHhcccceEEe-ehhhhhcchHHHHHHHHhc-CchhcccCCCCCCchHHHHHHHHHH
Confidence 589999999999999999999877765 333333 2333444443334444443 222222221 114455555555555
Q ss_pred hcCCe
Q 001603 79 LRQKK 83 (1046)
Q Consensus 79 L~~kr 83 (1046)
.+++.
T Consensus 130 ~~g~~ 134 (300)
T COG4240 130 ARGGP 134 (300)
T ss_pred hcCCC
Confidence 55553
No 438
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.43 E-value=0.1 Score=52.75 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=21.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
.|+|+|-||+||||+|..++.++..+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~ 27 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSK 27 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhc
Confidence 48999999999999999966655444
No 439
>PRK02496 adk adenylate kinase; Provisional
Probab=93.43 E-value=0.22 Score=50.34 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
|.|.|++|.||||+|+.+...+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998865
No 440
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.42 E-value=0.3 Score=50.08 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
+++|+|..|.|||||++.+.....
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccCC
Confidence 479999999999999999887544
No 441
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.39 E-value=0.068 Score=51.95 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=22.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcccc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEF 27 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f 27 (1046)
|.++||-|+||||+.+++++.+.-.|
T Consensus 5 IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 5 IVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred EEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 78999999999999999998766554
No 442
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.36 E-value=0.056 Score=51.96 Aligned_cols=20 Identities=35% Similarity=0.629 Sum_probs=18.5
Q ss_pred CEEEEcCCCCcHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAY 20 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~ 20 (1046)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 48999999999999999887
No 443
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.36 E-value=0.5 Score=57.35 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
||+++|+.|+||||++.+++..+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhH
Confidence 58999999999999999988765
No 444
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.28 E-value=0.069 Score=55.29 Aligned_cols=116 Identities=12% Similarity=0.015 Sum_probs=56.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHH-HHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCc--ccccccchHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYD-LISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADI--SIWNVDDGINIIGS 77 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~--~~~~~~~~~~~i~~ 77 (1046)
+++|.|+.|.||||+.+.+.- .+..+-...+|-..+ + .....+++..+....+. ...........++.
T Consensus 33 ~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~-----~----~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~ 103 (222)
T cd03287 33 CQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSA-----T----LSIFDSVLTRMGASDSIQHGMSTFMVELSETSH 103 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCce-----E----EeccceEEEEecCccccccccchHHHHHHHHHH
Confidence 368999999999999998876 333321111111100 0 00111111111111000 00111122233333
Q ss_pred hh--cCCeEEEEEecCCCh----H--H-HHHHhhccCCCCCCCEEEEEeCChhhHHHh
Q 001603 78 RL--RQKKVLLVIDDVADV----E--Q-LQNLARKRDWFGPGSKIVITTRDKQLLVAH 126 (1046)
Q Consensus 78 ~L--~~kr~LlVlDdv~~~----~--~-~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~ 126 (1046)
.+ .+++.|+++|+.... + . ...+...+.. ..++.+|++|-+..+....
T Consensus 104 il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~-~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 104 ILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLE-EKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHh-ccCCeEEEEcccHHHHHHH
Confidence 33 257899999997321 1 1 1122222221 1578999999998876543
No 445
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.24 E-value=0.065 Score=50.72 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=22.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHcc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISH 25 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~ 25 (1046)
+|.|.|++|.||||+|+.+++.+.-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC
Confidence 5899999999999999999987654
No 446
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.21 E-value=0.07 Score=53.10 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
|+|+|+.|.||||+|+.+.+...
T Consensus 7 I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 7 IFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred EEEECCCCcCHHHHHHHHHHHcC
Confidence 78999999999999999998653
No 447
>PRK13946 shikimate kinase; Provisional
Probab=93.20 E-value=0.072 Score=53.76 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
.|+++|+.|+||||+|+.+++++.
T Consensus 12 ~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 12 TVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 378999999999999999999773
No 448
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.19 E-value=0.28 Score=54.34 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=24.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHcccc------ceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEF------DGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~ 34 (1046)
++-|+|++|+|||++|.+++....... ..++|++
T Consensus 104 vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 104 ITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred EEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 467999999999999988876543211 2566766
No 449
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=93.18 E-value=0.23 Score=57.05 Aligned_cols=88 Identities=19% Similarity=0.185 Sum_probs=46.6
Q ss_pred EEEEcCCCCcHHHHH-HHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCccc---ccccc-------
Q 001603 2 MGIWGMGGLGKTTLA-RVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISI---WNVDD------- 70 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~---~~~~~------- 70 (1046)
++|.|..|+|||||| ..+.+.. .-+..+.+..+.+. ...+.++.+.+...=......-. .+...
T Consensus 165 ~~Ifg~~g~GKT~Lal~~I~~q~--~~dv~~V~~~IGeR---~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ap 239 (497)
T TIGR03324 165 ELILGDRQTGKTAIAIDTILNQK--GRNVLCIYCAIGQR---ASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAP 239 (497)
T ss_pred EEeecCCCCCHHHHHHHHHHHhc--CCCcEEEEEEeccC---cHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHHH
Confidence 689999999999997 4666643 23442333334332 22255555555443111000000 01100
Q ss_pred -hHHHHHHhh--cCCeEEEEEecCCCh
Q 001603 71 -GINIIGSRL--RQKKVLLVIDDVADV 94 (1046)
Q Consensus 71 -~~~~i~~~L--~~kr~LlVlDdv~~~ 94 (1046)
....+.+++ +++.+|||+||+-..
T Consensus 240 ~~a~aiAEyfrd~G~~VLlv~DdlTr~ 266 (497)
T TIGR03324 240 YAATSIGEHFMEQGRDVLIVYDDLTQH 266 (497)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcChhHH
Confidence 122345555 589999999999543
No 450
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.17 E-value=0.28 Score=53.32 Aligned_cols=84 Identities=24% Similarity=0.203 Sum_probs=46.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCc----ccccccchHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADI----SIWNVDDGINIIG 76 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~----~~~~~~~~~~~i~ 76 (1046)
+|-|+|+.|+||||||..+....+..-..++|++.-. .+-...+..++...+. .+...++....+.
T Consensus 55 ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~----------~ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 55 IVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEH----------ALDPEYAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS-------------HHHHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred eEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcc----------cchhhHHHhcCccccceEEecCCcHHHHHHHHH
Confidence 4679999999999999988887766656677876211 1122334444421111 1122233444444
Q ss_pred Hhhc-CCeEEEEEecCCCh
Q 001603 77 SRLR-QKKVLLVIDDVADV 94 (1046)
Q Consensus 77 ~~L~-~kr~LlVlDdv~~~ 94 (1046)
..++ +.--++|+|.|...
T Consensus 125 ~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHTTSESEEEEE-CTT-
T ss_pred HHhhcccccEEEEecCccc
Confidence 5454 45568999999654
No 451
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.17 E-value=0.25 Score=56.64 Aligned_cols=89 Identities=12% Similarity=0.048 Sum_probs=48.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccc--c-ceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCccc---ccccch----
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHE--F-DGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISI---WNVDDG---- 71 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~--f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~---~~~~~~---- 71 (1046)
++|.|..|+|||||+..+.+....+ + +.++.+..+.+ +...+.++.+.++..=.......+ .+....
T Consensus 144 ~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGE---RgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 144 LPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGI---TYEEANFFMKDFEETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred EEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccc---cchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 6899999999999999988754321 1 12333333333 222255555555433111000000 111111
Q ss_pred ----HHHHHHhhc---CCeEEEEEecCCC
Q 001603 72 ----INIIGSRLR---QKKVLLVIDDVAD 93 (1046)
Q Consensus 72 ----~~~i~~~L~---~kr~LlVlDdv~~ 93 (1046)
...+.++++ ++++||++||+-.
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 223556665 7899999999854
No 452
>PRK13948 shikimate kinase; Provisional
Probab=93.17 E-value=0.074 Score=53.19 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISH 25 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~ 25 (1046)
|.++|+.|+||||+++.+.+.+..
T Consensus 13 I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 13 VALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 789999999999999999987643
No 453
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.16 E-value=0.069 Score=54.66 Aligned_cols=21 Identities=24% Similarity=0.036 Sum_probs=18.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYD 21 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~ 21 (1046)
+++|.|+.|.||||+.+.+..
T Consensus 31 ~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 31 FHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998875
No 454
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.15 E-value=0.056 Score=55.56 Aligned_cols=21 Identities=29% Similarity=0.096 Sum_probs=19.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYD 21 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~ 21 (1046)
+++|+|+.|.||||+.+.+..
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EEEEECCCCCccHHHHHHHHH
Confidence 479999999999999999984
No 455
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.13 E-value=0.12 Score=54.27 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=23.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
+|||.|.+|.||||+|+++.+.++..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 69999999999999999999877543
No 456
>PRK13975 thymidylate kinase; Provisional
Probab=93.12 E-value=0.072 Score=54.45 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHcc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISH 25 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~ 25 (1046)
+|+|.|+.|+||||+|+.+++++..
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999998764
No 457
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.12 E-value=0.066 Score=56.19 Aligned_cols=26 Identities=38% Similarity=0.597 Sum_probs=23.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
+|||.|+.|.|||||++.+...++..
T Consensus 35 iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 35 IVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 58999999999999999999877654
No 458
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=93.12 E-value=0.45 Score=44.96 Aligned_cols=33 Identities=21% Similarity=0.032 Sum_probs=23.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcc--ccceeEEEE
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISH--EFDGSTFLA 34 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~--~f~~~~~~~ 34 (1046)
+.|+|..|.|||+.+..+...... .....+++.
T Consensus 3 ~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 3 VLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred EEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 679999999999999887765433 233344443
No 459
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.11 E-value=0.061 Score=55.19 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYD 21 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~ 21 (1046)
+|+|+|++|+|||||.+.++-
T Consensus 31 fvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999985
No 460
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.09 E-value=1.6 Score=45.67 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
|.++|++|.||+-||++|+-+.-
T Consensus 169 iLLyGPPGTGKSYLAKAVATEAn 191 (439)
T KOG0739|consen 169 ILLYGPPGTGKSYLAKAVATEAN 191 (439)
T ss_pred EEEeCCCCCcHHHHHHHHHhhcC
Confidence 67899999999999999998644
No 461
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.08 E-value=0.22 Score=54.74 Aligned_cols=107 Identities=18% Similarity=0.140 Sum_probs=58.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
|+|.|..|.||||+++++...+.... ..+.+.+..+.......... +...........-...+.++..|+.
T Consensus 147 ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~--------l~~~~~~~~~~~~~~~~~l~~~Lr~ 217 (308)
T TIGR02788 147 IIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVH--------LFYSKGGQGLAKVTPKDLLQSCLRM 217 (308)
T ss_pred EEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEE--------EEecCCCCCcCccCHHHHHHHHhcC
Confidence 78999999999999999988665432 23344433332111100000 0000000001112335567777888
Q ss_pred CeEEEEEecCCChHHHHHHhhccCCCCCCCE-EEEEeCChh
Q 001603 82 KKVLLVIDDVADVEQLQNLARKRDWFGPGSK-IVITTRDKQ 121 (1046)
Q Consensus 82 kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~-IiiTTR~~~ 121 (1046)
.+=.+|+|.+...+.++.+... . .|.. ++.|+-...
T Consensus 218 ~pd~ii~gE~r~~e~~~~l~a~-~---~g~~~~i~T~Ha~~ 254 (308)
T TIGR02788 218 RPDRIILGELRGDEAFDFIRAV-N---TGHPGSITTLHAGS 254 (308)
T ss_pred CCCeEEEeccCCHHHHHHHHHH-h---cCCCeEEEEEeCCC
Confidence 8888999999987766543332 2 3333 355555443
No 462
>PLN02459 probable adenylate kinase
Probab=93.07 E-value=0.31 Score=51.33 Aligned_cols=92 Identities=20% Similarity=0.219 Sum_probs=47.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHhhcC
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 81 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 81 (1046)
|.|.|++|.||||+|+.+.+.+. |....-=.-+|+.......+....+.+ ...... .+.+.....+++++..
T Consensus 32 ii~~G~PGsGK~T~a~~la~~~~--~~~is~gdllR~ei~~~t~lg~~i~~~----~~~G~l--VPdeiv~~ll~~~l~~ 103 (261)
T PLN02459 32 WVFLGCPGVGKGTYASRLSKLLG--VPHIATGDLVREEIKSSGPLGAQLKEI----VNQGKL--VPDEIIFSLLSKRLEA 103 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CcEEeCcHHHHHHHhccchhHHHHHHH----HHcCCc--cCHHHHHHHHHHHHhc
Confidence 67789999999999999988653 221111111222111111121112221 111111 2333445666666642
Q ss_pred ----CeEEEEEecC-CChHHHHHHh
Q 001603 82 ----KKVLLVIDDV-ADVEQLQNLA 101 (1046)
Q Consensus 82 ----kr~LlVlDdv-~~~~~~~~l~ 101 (1046)
.+-=+|||++ .+.+|.+.|.
T Consensus 104 ~~~~~~~g~iLDGFPRt~~Qa~~Le 128 (261)
T PLN02459 104 GEEEGESGFILDGFPRTVRQAEILE 128 (261)
T ss_pred ccccCCceEEEeCCCCCHHHHHHHH
Confidence 3456899999 4556665554
No 463
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.06 E-value=0.13 Score=57.45 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=53.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccce---eEEEEechhhhcccCCHHHHHH--HHHHHHhhccCcccccccchHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDG---STFLANVREKSEKEGSVVSLQK--QLLSDLLKLADISIWNVDDGINII 75 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~---~~~~~~~~~~~~~~~~~~~l~~--~ll~~l~~~~~~~~~~~~~~~~~i 75 (1046)
+|.|+|+.|.||||+++++...+....+. ++.+.+.-+.. ...+.. ....+ .... .+...-...+
T Consensus 136 lilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~-----~~~~~~~~~~v~Q----~~v~-~~~~~~~~~l 205 (358)
T TIGR02524 136 IVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFV-----YDEIETISASVCQ----SEIP-RHLNNFAAGV 205 (358)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEe-----ccccccccceeee----eecc-ccccCHHHHH
Confidence 48999999999999999999877543321 22222221111 111000 00000 0000 1122345667
Q ss_pred HHhhcCCeEEEEEecCCChHHHHHHhh
Q 001603 76 GSRLRQKKVLLVIDDVADVEQLQNLAR 102 (1046)
Q Consensus 76 ~~~L~~kr~LlVlDdv~~~~~~~~l~~ 102 (1046)
+..|+..+-.+++..+.+.+..+....
T Consensus 206 ~~aLR~~Pd~i~vGEiRd~et~~~al~ 232 (358)
T TIGR02524 206 RNALRRKPHAILVGEARDAETISAALE 232 (358)
T ss_pred HHHhccCCCEEeeeeeCCHHHHHHHHH
Confidence 888888999999999998887764443
No 464
>PRK15453 phosphoribulokinase; Provisional
Probab=93.04 E-value=0.11 Score=54.94 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=22.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHcc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISH 25 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~ 25 (1046)
+|+|.|.+|.||||+|+++.+.+..
T Consensus 7 iI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 7 IIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999986654
No 465
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.03 E-value=0.058 Score=54.58 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
+|+|+|+.|+|||||++.++...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47899999999999999997754
No 466
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.02 E-value=0.13 Score=45.33 Aligned_cols=25 Identities=36% Similarity=0.516 Sum_probs=22.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHcc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISH 25 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~ 25 (1046)
++.+.|.+|+||||++..+...+++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999987765
No 467
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.96 E-value=0.067 Score=52.83 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
|+|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 5799999999999999998865
No 468
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=92.93 E-value=0.091 Score=49.08 Aligned_cols=27 Identities=22% Similarity=0.522 Sum_probs=24.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHcccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEF 27 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f 27 (1046)
+|.|.|.+|.||||+++++.++++-.|
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~~~F 40 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEELGLKF 40 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHhCCcc
Confidence 578999999999999999999887554
No 469
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=92.93 E-value=0.073 Score=57.26 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=21.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
+|||.|..|+||||+|+.+...+.
T Consensus 64 IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 64 IISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 689999999999999988877654
No 470
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=92.93 E-value=0.33 Score=53.07 Aligned_cols=53 Identities=23% Similarity=0.332 Sum_probs=34.1
Q ss_pred HHHHHHhhcCCeEEEEEecCCChH----------HHHHHhhccCCCCCCCEEEEEeCChhhHHHhcCC
Q 001603 72 INIIGSRLRQKKVLLVIDDVADVE----------QLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVD 129 (1046)
Q Consensus 72 ~~~i~~~L~~kr~LlVlDdv~~~~----------~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~ 129 (1046)
...|.+.+..+.=++++|.+...- .+.+++.. .|+.+++.|+.+++..++.-+
T Consensus 515 R~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe-----~giTlivvThrpEv~~AL~PD 577 (593)
T COG2401 515 RAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELARE-----AGITLIVVTHRPEVGNALRPD 577 (593)
T ss_pred HHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHH-----hCCeEEEEecCHHHHhccCCc
Confidence 345777778888889999985421 23333333 577777777777777666444
No 471
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.92 E-value=0.99 Score=53.45 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
+|.+.|..|+||||++++++..+.-+
T Consensus 433 ~vLLhG~~g~GK~t~V~~vas~lg~h 458 (953)
T KOG0736|consen 433 SVLLHGPPGSGKTTVVRAVASELGLH 458 (953)
T ss_pred EEEEeCCCCCChHHHHHHHHHHhCCc
Confidence 46789999999999999999977654
No 472
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=92.91 E-value=0.081 Score=50.52 Aligned_cols=22 Identities=36% Similarity=0.330 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
|.|+|..|+||+++|+.++..-
T Consensus 24 vli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 24 VLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp EEEECCTTSSHHHHHHCCHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 7899999999999999988743
No 473
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.90 E-value=0.24 Score=54.14 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
.++|+|..|.|||||++.+.....
T Consensus 71 ri~I~G~sG~GKTtLl~~Ia~~~~ 94 (326)
T cd01136 71 RLGIFAGSGVGKSTLLGMIARGTT 94 (326)
T ss_pred EEEEECCCCCChHHHHHHHhCCCC
Confidence 378999999999999998887543
No 474
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.89 E-value=0.43 Score=49.30 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=18.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYD 21 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~ 21 (1046)
++.|+|+.|.||||+.+.+..
T Consensus 31 ~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 31 IMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 378999999999999999874
No 475
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=92.89 E-value=0.37 Score=53.95 Aligned_cols=93 Identities=23% Similarity=0.203 Sum_probs=54.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccc-ee-EEEEechhhhcccCCHHHHHHHHHHHHhhccCcccccccchHHHHHHh
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFD-GS-TFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSR 78 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~-~~-~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 78 (1046)
.|.|.|+.|.||||+++++.+.+....+ .. +-+.+.-|..-.. ...+ ........+ .+.....+.++..
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~--~~~~----~~~~q~evg---~~~~~~~~~l~~a 221 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGS--PDDL----LPPAQSQIG---RDVDSFANGIRLA 221 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCC--Ccee----ecccccccC---CCccCHHHHHHHh
Confidence 3789999999999999999887754332 22 3333222211000 0000 000000001 1222445678888
Q ss_pred hcCCeEEEEEecCCChHHHHHHhh
Q 001603 79 LRQKKVLLVIDDVADVEQLQNLAR 102 (1046)
Q Consensus 79 L~~kr~LlVlDdv~~~~~~~~l~~ 102 (1046)
|+..+=.|+++.+.+.+.++....
T Consensus 222 LR~~PD~I~vGEiRd~et~~~al~ 245 (372)
T TIGR02525 222 LRRAPKIIGVGEIRDLETFQAAVL 245 (372)
T ss_pred hccCCCEEeeCCCCCHHHHHHHHH
Confidence 999999999999999988775443
No 476
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=92.85 E-value=0.15 Score=46.78 Aligned_cols=25 Identities=36% Similarity=0.623 Sum_probs=22.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
|.+.|.||+||||++..++..+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~ 26 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEK 26 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7899999999999999999877654
No 477
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.85 E-value=0.068 Score=53.78 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
+|+|+|+.|+||||||+.+++..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 58999999999999999998854
No 478
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.84 E-value=0.12 Score=52.43 Aligned_cols=33 Identities=33% Similarity=0.517 Sum_probs=24.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 34 (1046)
+|+|+|.+|.|||||.|.+...+.- -.+.+++.
T Consensus 32 ~VaiIG~SGaGKSTLLR~lngl~d~-t~G~i~~~ 64 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNGLVDP-TSGEILFN 64 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-CcceEEec
Confidence 5899999999999999999874322 23455554
No 479
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.82 E-value=0.092 Score=48.54 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYD 21 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~ 21 (1046)
|.|+|..|+|||||.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~ 21 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCG 21 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 78999999999999999986
No 480
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.82 E-value=0.59 Score=47.59 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
+++|.|..|.|||||++.++...
T Consensus 37 ~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 37 LTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998754
No 481
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.82 E-value=0.073 Score=47.54 Aligned_cols=20 Identities=40% Similarity=0.338 Sum_probs=18.2
Q ss_pred CEEEEcCCCCcHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAY 20 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~ 20 (1046)
+++|.|++|.|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 47999999999999999976
No 482
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.81 E-value=0.057 Score=30.48 Aligned_cols=16 Identities=44% Similarity=0.831 Sum_probs=5.8
Q ss_pred CCCeeeCCCCCCcccc
Q 001603 748 SLKQLNLSQNNFVTLP 763 (1046)
Q Consensus 748 ~L~~L~Ls~n~l~~lp 763 (1046)
+|+.|+|++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4444555555444443
No 483
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=92.78 E-value=0.22 Score=57.70 Aligned_cols=88 Identities=19% Similarity=0.141 Sum_probs=44.7
Q ss_pred EEEEcCCCCcHHHHHH-HHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCccc---ccccch------
Q 001603 2 MGIWGMGGLGKTTLAR-VAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISI---WNVDDG------ 71 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~---~~~~~~------ 71 (1046)
++|.|..|+||||||. .+.+.. .-+..|.+..+.+.. ..+.++.+.+...=.......+ .+....
T Consensus 165 ~~Ifg~~g~GKt~lal~~i~~~~--~~dv~~V~~~IGer~---~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a~ 239 (502)
T PRK09281 165 ELIIGDRQTGKTAIAIDTIINQK--GKDVICIYVAIGQKA---STVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLAP 239 (502)
T ss_pred EEeecCCCCCchHHHHHHHHHhc--CCCeEEEEEEecCCh---HHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHHH
Confidence 6899999999999964 444432 334543333343321 1144555544433110000000 011011
Q ss_pred --HHHHHHhh--cCCeEEEEEecCCCh
Q 001603 72 --INIIGSRL--RQKKVLLVIDDVADV 94 (1046)
Q Consensus 72 --~~~i~~~L--~~kr~LlVlDdv~~~ 94 (1046)
...+.+++ +++.+|+|+||+-..
T Consensus 240 ~~a~tiAEyfrd~G~~VLli~DdlTr~ 266 (502)
T PRK09281 240 YAGCAMGEYFMDNGKDALIVYDDLSKQ 266 (502)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCchHH
Confidence 12234444 479999999999654
No 484
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=92.78 E-value=2 Score=44.00 Aligned_cols=135 Identities=19% Similarity=0.340 Sum_probs=72.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHH-HHHHHHHhhccCcccccccchHHHHHHhh-
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQ-KQLLSDLLKLADISIWNVDDGINIIGSRL- 79 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~-~~ll~~l~~~~~~~~~~~~~~~~~i~~~L- 79 (1046)
|..||++|.|||-+|++.+.+-...|- . +. -|+.. +-..++...+++.+
T Consensus 208 vLmYGPPGTGKTlmARAcAaqT~aTFL-----K--------------LAgPQLVQ----------MfIGdGAkLVRDAFa 258 (424)
T KOG0652|consen 208 VLMYGPPGTGKTLMARACAAQTNATFL-----K--------------LAGPQLVQ----------MFIGDGAKLVRDAFA 258 (424)
T ss_pred eEeeCCCCCcHHHHHHHHHHhccchHH-----H--------------hcchHHHh----------hhhcchHHHHHHHHH
Confidence 568999999999999998765433321 1 10 01111 11122334444433
Q ss_pred ---cCCeEEEEEecCCCh-------------H---HHHHHhhccCCCCCC--CEEEEEeCChhhHH-----HhcCCCcce
Q 001603 80 ---RQKKVLLVIDDVADV-------------E---QLQNLARKRDWFGPG--SKIVITTRDKQLLV-----AHEVDEEHI 133 (1046)
Q Consensus 80 ---~~kr~LlVlDdv~~~-------------~---~~~~l~~~~~~~~~g--s~IiiTTR~~~~~~-----~~~~~~~~~ 133 (1046)
...+.+|.+|.++.. + ..-+++..+.-|.+. .+||..|.--.++. .-..+. .
T Consensus 259 LAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDR--K 336 (424)
T KOG0652|consen 259 LAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDR--K 336 (424)
T ss_pred HhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccc--c
Confidence 256789999998632 1 133455555545544 45666554333322 222333 6
Q ss_pred EecCCCChHHHHHHHHHhhcCCC-CCCchHHHHHH
Q 001603 134 YNLEVLSNDEALQLFSMKAFKTR-QPMGEYVELSK 167 (1046)
Q Consensus 134 ~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~ 167 (1046)
++..--+++...++++-++-+-. .+.-.++++++
T Consensus 337 IEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaR 371 (424)
T KOG0652|consen 337 IEFPHPNEEARARILQIHSRKMNVSDDVNFEELAR 371 (424)
T ss_pred ccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhh
Confidence 77776666666666665554433 23445666554
No 485
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.76 E-value=0.097 Score=52.81 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=26.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHcccccee
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGS 30 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~ 30 (1046)
+|.|+|+.|+|||||++++.+.....|...
T Consensus 4 ~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~ 33 (183)
T PF00625_consen 4 PIVLVGPSGSGKSTLAKRLIQEFPDKFGRV 33 (183)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHSTTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcccccccc
Confidence 478999999999999999999888888533
No 486
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.71 E-value=0.078 Score=54.67 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
+|+|+|++|+||||||+.++...
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998864
No 487
>PRK13768 GTPase; Provisional
Probab=92.70 E-value=0.12 Score=55.06 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=21.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHE 26 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~ 26 (1046)
+++|+|+||+||||++..+...++.+
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~ 29 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQ 29 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhc
Confidence 47899999999999998888766543
No 488
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=92.67 E-value=0.15 Score=57.77 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
.++|.|..|+|||||++.+....
T Consensus 157 rigI~G~sG~GKSTLL~~I~~~~ 179 (433)
T PRK07594 157 RVGIFSAPGVGKSTLLAMLCNAP 179 (433)
T ss_pred EEEEECCCCCCccHHHHHhcCCC
Confidence 37999999999999999888744
No 489
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.66 E-value=0.37 Score=53.37 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=22.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHc--cccceeEEEE
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLIS--HEFDGSTFLA 34 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~--~~f~~~~~~~ 34 (1046)
+|.++|+.||||||-..+++.++. ..=..+.++.
T Consensus 205 vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT 240 (407)
T COG1419 205 VIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT 240 (407)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE
Confidence 589999999999986666655443 3333344443
No 490
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.66 E-value=0.092 Score=49.96 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
+|+|+|.+|+||||+.+.+-...
T Consensus 6 vvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 6 VVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred EEEEEcCCCCChHHHHHHHHHHH
Confidence 58999999999999998887765
No 491
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.64 E-value=0.37 Score=53.14 Aligned_cols=86 Identities=22% Similarity=0.276 Sum_probs=50.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHhhccCccc---ccc--------cc
Q 001603 2 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISI---WNV--------DD 70 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~---~~~--------~~ 70 (1046)
|||..-+|+|||||.-.+++. .++|..+. .-+.| ...-+.+..++.+.+-+.....-+ .+. ..
T Consensus 166 iGIFAgsGVGKStLLgMiar~--t~aDv~Vi-aLIGE---RGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~ 239 (441)
T COG1157 166 IGIFAGSGVGKSTLLGMIARN--TEADVNVI-ALIGE---RGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAF 239 (441)
T ss_pred eEEEecCCCcHHHHHHHHhcc--ccCCEEEE-EEeec---cchhHHHHHHHhcchhhccceEEEEECCCCCHHHHHHHHH
Confidence 799999999999999998874 33443322 22222 211266666666555431111100 111 11
Q ss_pred hHHHHHHhh--cCCeEEEEEecCCC
Q 001603 71 GINIIGSRL--RQKKVLLVIDDVAD 93 (1046)
Q Consensus 71 ~~~~i~~~L--~~kr~LlVlDdv~~ 93 (1046)
....|.+++ ++|+||+++|.+-.
T Consensus 240 ~At~IAEyFRDqG~~VLL~mDSlTR 264 (441)
T COG1157 240 TATTIAEYFRDQGKRVLLIMDSLTR 264 (441)
T ss_pred HHHHHHHHHHhCCCeEEEEeecHHH
Confidence 134566666 47999999999843
No 492
>PRK05439 pantothenate kinase; Provisional
Probab=92.58 E-value=0.085 Score=57.21 Aligned_cols=25 Identities=40% Similarity=0.587 Sum_probs=22.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHcc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISH 25 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~ 25 (1046)
+|||.|.+|+||||+|+.+...+..
T Consensus 88 iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 88 IIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999886654
No 493
>COG3910 Predicted ATPase [General function prediction only]
Probab=92.55 E-value=1 Score=43.98 Aligned_cols=63 Identities=27% Similarity=0.449 Sum_probs=37.9
Q ss_pred HHHHHHhhcCCeEEEEEecCCC----hHHHHHHhhccCCCCCCCEEEEEeCChhhHHHhcCCCcceEecCC
Q 001603 72 INIIGSRLRQKKVLLVIDDVAD----VEQLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEV 138 (1046)
Q Consensus 72 ~~~i~~~L~~kr~LlVlDdv~~----~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~ 138 (1046)
...+.+++.+ +=+-|||.=+. ..|++-+..-..-...|+.|||.|-+.-+. +..++.+|+...
T Consensus 137 ~~i~~~rf~~-~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLl---AiP~A~I~~~~~ 203 (233)
T COG3910 137 LAIFHNRFNG-QGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILL---AIPGAEIYEISE 203 (233)
T ss_pred HHHHHHHhcc-CceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhhe---eCCCcEEEEEec
Confidence 4455566544 45678898764 256655544333345689999999987643 334444666543
No 494
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.54 E-value=0.25 Score=48.50 Aligned_cols=114 Identities=14% Similarity=0.052 Sum_probs=57.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHccccceeEEEEechhhhcccCCHHHHHHHHHHHHh-h--ccCc--cccc-------c
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLL-K--LADI--SIWN-------V 68 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~--~~~~--~~~~-------~ 68 (1046)
+|-|++..|.||||.|..++-+...+=-.+.++.-.+.. ...+ -....+.+ .+. . ..+. ...+ .
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~-~~~G-E~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA-WPNG-ERAAFEPH--GVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-cccC-hHHHHHhc--CcEEEECCCCCeecCCCcHHHHHHH
Confidence 467888899999999988776554432223322222221 1112 22222222 111 0 0000 0001 1
Q ss_pred cchHHHHHHhhc-CCeEEEEEecCCC--------hHHHHHHhhccCCCCCCCEEEEEeCChh
Q 001603 69 DDGINIIGSRLR-QKKVLLVIDDVAD--------VEQLQNLARKRDWFGPGSKIVITTRDKQ 121 (1046)
Q Consensus 69 ~~~~~~i~~~L~-~kr~LlVlDdv~~--------~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 121 (1046)
.+..+..++.+. ++-=|||||.+-. .+++.++... ..++.-||+|-|+..
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~---rp~~~evVlTGR~~p 141 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQE---RPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHh---CCCCCEEEEECCCCC
Confidence 112233344443 4556999999842 2333344433 346779999999875
No 495
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=92.54 E-value=0.4 Score=56.31 Aligned_cols=49 Identities=20% Similarity=0.465 Sum_probs=32.6
Q ss_pred HHHHhhcCCeEEEEEecCCC------hHHHHHHhhccCCCCCCCEEEEEeCChhhHHHhc
Q 001603 74 IIGSRLRQKKVLLVIDDVAD------VEQLQNLARKRDWFGPGSKIVITTRDKQLLVAHE 127 (1046)
Q Consensus 74 ~i~~~L~~kr~LlVlDdv~~------~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~ 127 (1046)
.+.+.|-.++=+++||.=-+ ..-++.++.. -+| .+||.|-|+..+....
T Consensus 163 ~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~----~~g-tviiVSHDR~FLd~V~ 217 (530)
T COG0488 163 ALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR----YPG-TVIVVSHDRYFLDNVA 217 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCC-cEEEEeCCHHHHHHHh
Confidence 35555667788999997543 2334444443 245 7999999999887653
No 496
>PRK14530 adenylate kinase; Provisional
Probab=92.49 E-value=0.1 Score=54.26 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 001603 2 MGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 2 v~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
|.|+|++|.||||+|+.+++.+
T Consensus 6 I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 6 ILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998865
No 497
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.49 E-value=0.059 Score=32.80 Aligned_cols=19 Identities=0% Similarity=0.025 Sum_probs=10.0
Q ss_pred ceEEEcCCCCchhhccccc
Q 001603 395 TVEFNMCYSRIEELWNEIK 413 (1046)
Q Consensus 395 L~~L~L~~~~i~~l~~~~~ 413 (1046)
|++|++++|+++.+|.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 498
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.47 E-value=0.098 Score=48.94 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=21.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHH
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLI 23 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~ 23 (1046)
+|.+.|.-|.||||+++.+++.+
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999865
No 499
>PRK04182 cytidylate kinase; Provisional
Probab=92.44 E-value=0.095 Score=52.66 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
+|+|.|+.|.||||+|+.+++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998753
No 500
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.44 E-value=0.39 Score=55.44 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHHc
Q 001603 1 MMGIWGMGGLGKTTLARVAYDLIS 24 (1046)
Q Consensus 1 vv~I~G~gGiGKTtLa~~~~~~~~ 24 (1046)
||+++|+.|+||||++.+++..+.
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred EEEEECCCCccHHHHHHHHHHHHH
Confidence 589999999999999999997653
Done!