Query 001603
Match_columns 1046
No_of_seqs 577 out of 5466
Neff 9.4
Searched_HMMs 29240
Date Tue Mar 26 16:45:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001603.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_901-904//hhsearch_pdb/001603hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 353.4 30.6 436 345-787 95-555 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 349.9 35.7 456 346-803 174-716 (768)
3 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 347.8 19.5 280 1-294 154-472 (549)
4 3t6q_A CD180 antigen; protein- 1.0 1 1 329.1 39.3 443 338-802 45-558 (606)
5 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 326.9 16.4 279 1-293 149-452 (1249)
6 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 324.1 32.9 433 338-802 44-556 (606)
7 4eco_A Uncharacterized protein 1.0 1 1 311.0 24.7 423 322-802 82-598 (636)
8 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 310.9 29.9 449 350-809 32-538 (606)
9 3t6q_A CD180 antigen; protein- 1.0 1 1 310.4 38.6 446 354-801 16-510 (606)
10 4eco_A Uncharacterized protein 1.0 1 1 309.3 27.4 273 408-686 239-546 (636)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=353.41 Aligned_cols=436 Identities=21% Similarity=0.172 Sum_probs=153.9
Q ss_pred HHCCCCCCCEEEECCCCCC----C--CHHCCCCCCCEEEECCCCCC-CCCCCC--CCCCCEEEECCCCCCHHHC-CC---
Q ss_conf 3307998619973894479----9--40003657438983389999-889977--7789129976888801000-10---
Q 001603 345 AFSQMTNLRLLKIDNLQLP----E--GLEYLSNKLRLLDWHRYPLK-SLPSNF--QLEKTVEFNMCYSRIEELW-NE--- 411 (1046)
Q Consensus 345 ~f~~m~~Lr~L~l~~~~l~----~--~~~~l~~~Lr~L~l~~~~l~-~lp~~~--~~~~L~~L~l~~~~i~~l~-~~--- 411 (1046)
.|.++++|+.|+++++.+. . .+..++ +|++|+++++.+. ..|..+ .+++|++|++++|.+.... ..
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 173 (768)
T 3rgz_A 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS-GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173 (768)
T ss_dssp CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCT-TCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred HHCCCCCCCEEECCCCCCCCCCCCHHHHHCCC-CCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHH
T ss_conf 32457889989898985787078967872788-99989896882677479778563889998989798358858715566
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCE
Q ss_conf 137887758976799687778999999988999841777784016442288985099525899998559967-7565544
Q 001603 412 IKYLNMLKVMKLSHSQNLIKTPDFTGVPNLEELILEGCTRLHEIHPSLLLHSKLVILNLKDCTSLTTLPGKI-SMKSLKT 490 (1046)
Q Consensus 412 ~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~~~~~i~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L~~ 490 (1046)
+..+++|++|++++|...... .+..+++|++|++++|.....++. ++.+++|++|++++|.....+|..+ .+++|+.
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 251 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCC-BCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCE
T ss_pred HCCCCCCCEEECCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCE
T ss_conf 435898898989788034657-845478689898928827887711-126999998979488587816577744888898
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCHHCCCC-CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCC
Q ss_conf 5124776773210001266789883762566543-235100038-99869944899997423054431586767841498
Q 001603 491 LVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIE-ELPLSIQHL-TGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGC 568 (1046)
Q Consensus 491 L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~-~lp~~l~~l-~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~~ 568 (1046)
|++++|. +....+.. .+++|++|++.++.++ .+|..+... ++|+.|++++|...+.+|..+..+++|+.|++++|
T Consensus 252 L~Ls~n~-l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 328 (768)
T 3rgz_A 252 LNISSNQ-FVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328 (768)
T ss_dssp EECCSSC-CEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSS
T ss_pred EECCCCC-CCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCC
T ss_conf 9898886-65716724--36878989791785577258888844686889989689677842367755877667789788
Q ss_pred CCCCCCCCC-CCCCCCCCEEECCCCCCC-CCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCC--CCCCCEEECCCCCCCC
Q ss_conf 788867732-168764460533474565-4570000579-9997866999998756874679--9878888326977998
Q 001603 569 SKLKKFPES-LGSMKDLMELFLDGTSIA-EVPSSIELLT-GLQLLNLNNCSNLVRLPSCING--LRSLKTLNLSGCSKLQ 643 (1046)
Q Consensus 569 ~~~~~~p~~-l~~l~~L~~L~L~~~~i~-~lp~~l~~l~-~L~~L~L~~~~~l~~lp~~~~~--l~~L~~L~l~~c~~l~ 643 (1046)
...+.+|.. +..+++|+.|++.+|.+. .+|..+..++ +|+.|++++|.....+|..+.. +++|+.|++++|...+
T Consensus 329 ~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 408 (768)
T 3rgz_A 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408 (768)
T ss_dssp EEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE
T ss_pred CCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC
T ss_conf 52573797887248888788484784376230989863227719986278747876766653324776189897784654
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCC-CCCHHHCCCCCEEECCCCCCCCCCCCCCC-CCCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf 7672237888875252358634589-96023104786364478889999998556-755433467677-62135898557
Q 001603 644 NVPETLGQVESLEELDISGTAIRRP-PSSIFVMNNLKTLSFSGCNGPPSSTSWHW-HFPFNLMGQRSY-PVALMLPSLSG 720 (1046)
Q Consensus 644 ~lp~~~~~l~~L~~L~L~~~~i~~~-p~~~~~l~~L~~L~l~~c~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~l~~ 720 (1046)
.+|..++.+++|+.|++++|.+++. |..+..+++|+.|++++|......+.... ...+........ ..+.++..+..
T Consensus 409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 488 (768)
T 3rgz_A 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred CCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHC
T ss_conf 24877756898798989588466854677744998898989788154718978828777329990199513758878816
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHHCCCCCEECCCCCCCCCCCC
Q ss_conf 8988889667999999988533347678885528889874-356455302455701133663566689
Q 001603 721 LHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFV-TLPASINSLFNLGQLDLEDCKRLQSMP 787 (1046)
Q Consensus 721 l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~l~~ip 787 (1046)
+++|+.|++++|.+ .+.+|..++.+++|+.|++++|+++ .+|..+..+++|+.|++++|+..+.+|
T Consensus 489 l~~L~~L~L~~N~l-~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 489 CTNLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CTTCCEEECCSSCC-CSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred CCCCCEEECCCCCC-CCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCC
T ss_conf 99899897539951-89687688568999989897894337488777088989989898884688279
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=349.89 Aligned_cols=456 Identities=22% Similarity=0.207 Sum_probs=300.1
Q ss_pred HCCCCCCCEEEECCCCCCCCHH-CCCCCCCEEEECCCCCCCCCCCC-CCCCCEEEECCCCCCH-HHCCCCCCCCCCCEEE
Q ss_conf 3079986199738944799400-03657438983389999889977-7789129976888801-0001013788775897
Q 001603 346 FSQMTNLRLLKIDNLQLPEGLE-YLSNKLRLLDWHRYPLKSLPSNF-QLEKTVEFNMCYSRIE-ELWNEIKYLNMLKVMK 422 (1046)
Q Consensus 346 f~~m~~Lr~L~l~~~~l~~~~~-~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~ 422 (1046)
+.++++|+.|+++++.+.+... ....+|++|+++++.+...++.+ .+++|++|++++|.+. .++..+..+++|++|+
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 253 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEE
T ss_pred HCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEE
T ss_conf 43589889898978803465784547868989892882788771112699999897948858781657774488889898
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCCCC-CCCCCCEEECCCCCCCC
Q ss_conf 6799687778999999988999841777784016442288-985099525899998559967-75655445124776773
Q 001603 423 LSHSQNLIKTPDFTGVPNLEELILEGCTRLHEIHPSLLLH-SKLVILNLKDCTSLTTLPGKI-SMKSLKTLVLSGCLKLT 500 (1046)
Q Consensus 423 Ls~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~~~~~i~~l-~~L~~L~l~~~~~l~~lp~~~-~l~~L~~L~l~~~~~l~ 500 (1046)
+++|......|.. .+++|++|++++|...+.+|..+... ++|+.|++++|.....+|..+ .+++|+.|++++|....
T Consensus 254 Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 332 (768)
T 3rgz_A 254 ISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332 (768)
T ss_dssp CCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred CCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC
T ss_conf 9888665716724-368789897917855772588888446868899896896778423677558776677897885257
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCC-CCCHHCCC---------------------------CCCCCEEECCCCCCCCCCHH
Q ss_conf 210001266789883762566543-23510003---------------------------89986994489999742305
Q 001603 501 KKCLEFAGSMNDLSELFLDRTTIE-ELPLSIQH---------------------------LTGLVLLNLKDCKNLKSLSH 552 (1046)
Q Consensus 501 ~~~~~~~~~l~~L~~L~l~~~~i~-~lp~~l~~---------------------------l~~L~~L~l~~~~~l~~l~~ 552 (1046)
......++.+++|++|+++.+.+. .+|..+.. +++|+.|++++|...+.+|.
T Consensus 333 ~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 412 (768)
T 3rgz_A 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412 (768)
T ss_dssp ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG
T ss_pred CCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCH
T ss_conf 37978872488887884847843762309898632277199862787478767666533247761898977846542487
Q ss_pred HHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 4431586767841498788867732168764460533474565-457000057999978669999987568746799878
Q 001603 553 TLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIA-EVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSL 631 (1046)
Q Consensus 553 ~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L 631 (1046)
.+..+++|+.|++++|...+.+|..+..+++|+.|++.+|.+. .+|..+..+++|+.|++++|.....+|..+..+++|
T Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 492 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred HHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCC
T ss_conf 77568987989895884668546777449988989897881547189788287773299901995137588788169989
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCHHHCCCCCEEECCCCCCCCCCCCCCCCCC----CCCC--
Q ss_conf 88832697799876722378888752523586345-8996023104786364478889999998556755----4334--
Q 001603 632 KTLNLSGCSKLQNVPETLGQVESLEELDISGTAIR-RPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFP----FNLM-- 704 (1046)
Q Consensus 632 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~L~~~~i~-~~p~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~----~~~~-- 704 (1046)
+.|++++|...+.+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|......+....... ....
T Consensus 493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred CEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCC
T ss_conf 98975399518968768856899998989789433748877708898998989888468827957860421223201345
Q ss_pred ------------------------------------------CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf ------------------------------------------67677621358985578988889667999999988533
Q 001603 705 ------------------------------------------GQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPND 742 (1046)
Q Consensus 705 ------------------------------------------~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~ 742 (1046)
.......+.++..+..+++|+.|++++|.+ .+.+|..
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l-~g~ip~~ 651 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML-SGYIPKE 651 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC-BSCCCGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCC-CCCCCHH
T ss_conf 421111344432222332221001355632320023211001133100462743340335665797858801-5558778
Q ss_pred CCCCCCCCEEECCCCCCC-CCCHHHHHCCCCCEECCCCCCCCCCCCCC---CCCCCEEECCCCCC
Q ss_conf 347678885528889874-35645530245570113366356668999---98975266189744
Q 001603 743 IGNLCSLKQLNLSQNNFV-TLPASINSLFNLGQLDLEDCKRLQSMPQL---PSNLYEVQVNGCAS 803 (1046)
Q Consensus 743 l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~l~~ip~l---p~~L~~L~~~~C~s 803 (1046)
++.+++|+.|+|++|+++ .+|..+..+++|+.|++++|+..+.+|+. .++|+.|++++|.-
T Consensus 652 l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred HHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCC
T ss_conf 84141578784868803887896784777899898978802386886775788789787968815
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=347.78 Aligned_cols=280 Identities=16% Similarity=0.153 Sum_probs=224.1
Q ss_pred CEEEECCCCCCHHHHHHHHHH----HHCCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHHCCC-CCCCCC-----CC
Q ss_conf 989992898808999999998----87066660399984400110368989999999998741038-643441-----00
Q 001603 1 MMGIWGMGGLGKTTLARVAYD----LISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLAD-ISIWNV-----DD 70 (1046)
Q Consensus 1 vi~I~G~gGiGKTtLa~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~-~~~~~~-----~~ 70 (1046)
+|+|+||||+||||||+++|+ +++.+|+.++|+. +++... .+ ...++++++.++....+ ....+. ..
T Consensus 154 vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~-~~-~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~ 230 (549)
T 2a5y_B 154 FLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP-KS-TFDLFTDILLMLKSEDDLLNFPSVEHVTSVV 230 (549)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST-TH-HHHHHHHHHHHHTTTSCCTTCCCCTTCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE-ECCCCC-CC-HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 89998699998899999999840698746699579999-789878-79-9999999999985375534555533146999
Q ss_pred HHHHHHHHHCCC-EEEEEEECCCCHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHCCCCCCEEECCCCCHHHHHHHHH
Q ss_conf 099999752598-1899993589968887776166987999879999388356888158983348658999678999997
Q 001603 71 GINIIGSRLRQK-KVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFS 149 (1046)
Q Consensus 71 ~~~~i~~~l~~k-~~LlVlDdv~~~~~l~~l~~~~~~~~~gs~IiiTtR~~~~~~~~~~~~~~~~~v~~L~~~ea~~Lf~ 149 (1046)
....+++.|+++ |+||||||||+.+++ .+.. .+||+||||||++.++..++. ...+|+|++|+.+||++||.
T Consensus 231 l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~-~~~~~~l~~L~~~ea~~Lf~ 303 (549)
T 2a5y_B 231 LKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQ-TCEFIEVTSLEIDECYDFLE 303 (549)
T ss_dssp HHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCS-CEEEEECCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCHHH-CCCC-----CCCCEEEEECCCHHHHHHCCC-CCEEEECCCCCHHHHHHHHH
T ss_conf 9999999976898489999799971441-5432-----699889997497799997088-97389899989899999999
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHH-HHCCCCCCHHHHHHHCCCCCCHHHHHH
Q ss_conf 8202799999139999999998718993489999632089996899999998-741999706888862202451432303
Q 001603 150 MKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSFLNGRSVDLWRSTLKR-LKKEPPNRIINILQISFDGLQDLEKKI 228 (1046)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~w~~~l~~-l~~~~~~~i~~~l~~s~~~L~~~~k~~ 228 (1046)
++||.... .+...+++.+|+++|+|+||||+++|+.++.++ .+|...+.. +...+...+..++++||+.|++..|.|
T Consensus 304 ~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~ 381 (549)
T 2a5y_B 304 AYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRC 381 (549)
T ss_dssp HTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHH
T ss_pred HHHCCCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCH-HHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 87448998-556899999999995998399999999844344-8999875787613647778989751620226799999
Q ss_pred HC-----------EEECCCCCCCHHHHHHHHHHC--CCCCCC-----------CHHHEECCCEEEEEC---CCEEEEHHH
Q ss_conf 20-----------350125777877999999846--998534-----------221100131079835---993970599
Q 001603 229 FL-----------DVACFFKSWDRDHVEKILEGC--GFSPVI-----------GIEVLIEKSLLTVDD---GNRLWMHDL 281 (1046)
Q Consensus 229 fl-----------~~a~f~~~~~~~~l~~~~~~~--~~~~~~-----------~i~~L~~~~Li~~~~---~~~~~mHdl 281 (1046)
|+ |||+||+++..+ +++|.++ ||.... .++.|+++||++... ..+|.|||+
T Consensus 382 f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdl 459 (549)
T 2a5y_B 382 VEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHI 459 (549)
T ss_dssp HHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHH
T ss_pred HHCCCHHHHHHHHHEEEECCCCEEE--EEEEEEECCCEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCEEEEECHH
T ss_conf 7526522336743235608997666--53311013550026778999999999999998758836714798049996769
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999985119
Q 001603 282 LQELGHQIVQRQS 294 (1046)
Q Consensus 282 i~~~~~~i~~~~~ 294 (1046)
+|+|+++++.+++
T Consensus 460 v~~~a~~~~~~~~ 472 (549)
T 2a5y_B 460 IHMFLKHVVDAQT 472 (549)
T ss_dssp HHHHHHTTSCTHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999988989
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=329.08 Aligned_cols=443 Identities=19% Similarity=0.191 Sum_probs=283.5
Q ss_pred CCCCCHHHHCCCCCCCEEEECCCCC----CCCHHCCCCCCCEEEECCCCCCCCCC-CC-CCCCCEEEECCCCCCHHH-CC
Q ss_conf 3224725330799861997389447----99400036574389833899998899-77-778912997688880100-01
Q 001603 338 YLSAGAKAFSQMTNLRLLKIDNLQL----PEGLEYLSNKLRLLDWHRYPLKSLPS-NF-QLEKTVEFNMCYSRIEEL-WN 410 (1046)
Q Consensus 338 ~~~~~~~~f~~m~~Lr~L~l~~~~l----~~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l-~~ 410 (1046)
...+...+|.++++|+.|+++++.+ +..+..++ +|++|+++++.+..+++ .| .+++|++|++++|.+..+ +.
T Consensus 45 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~ 123 (606)
T 3t6q_A 45 LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQH-RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI 123 (606)
T ss_dssp CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGS
T ss_pred CCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCC-CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCC
T ss_conf 4717966725676652897889835524851136843-367644889856545865523442153765212676657810
Q ss_pred CCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC--EEECCCCCCCCCCCCCCCCCC
Q ss_conf 01378877589767996877-789999999889998417777840164422889850--995258999985599677565
Q 001603 411 EIKYLNMLKVMKLSHSQNLI-KTPDFTGVPNLEELILEGCTRLHEIHPSLLLHSKLV--ILNLKDCTSLTTLPGKISMKS 487 (1046)
Q Consensus 411 ~~~~l~~L~~L~Ls~~~~~~-~~~~~~~l~~L~~L~L~~c~~~~~~~~~i~~l~~L~--~L~l~~~~~l~~lp~~~~l~~ 487 (1046)
.+..+++|++|++++|.... ..+.+..+++|++|++++|......+..++.+++|+ .|++++|......|..+....
T Consensus 124 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~ 203 (606)
T 3t6q_A 124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203 (606)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCE
T ss_pred HHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCC
T ss_conf 12237822389887983411476545687656877765684455496563322156403896679814754866730010
Q ss_pred CCEEECCCCC---------------------------------------------------CCCCCCCCCCCCCCCCCEE
Q ss_conf 5445124776---------------------------------------------------7732100012667898837
Q 001603 488 LKTLVLSGCL---------------------------------------------------KLTKKCLEFAGSMNDLSEL 516 (1046)
Q Consensus 488 L~~L~l~~~~---------------------------------------------------~l~~~~~~~~~~l~~L~~L 516 (1046)
|+.|++++|. .+....+..++.+++|++|
T Consensus 204 L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 283 (606)
T 3t6q_A 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL 283 (606)
T ss_dssp EEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEE
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEE
T ss_conf 01355677266777765133564422002011026412268667430320750599944576585577774456678889
Q ss_pred ECCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCC
Q ss_conf 625665432351000389986994489999742305443158676784149878886773-2168764460533474565
Q 001603 517 FLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPE-SLGSMKDLMELFLDGTSIA 595 (1046)
Q Consensus 517 ~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~~p~-~l~~l~~L~~L~L~~~~i~ 595 (1046)
+++++.++.+|..+..+++|+.|++++|......+..+..+++|+.|++++|.....++. .+..+++|+.|++++|.+.
T Consensus 284 ~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 363 (606)
T 3t6q_A 284 DLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363 (606)
T ss_dssp ECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCC
T ss_conf 56288267778214165468889771687686760233015768988898997444346245506675898878899666
Q ss_pred CC---CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCC-CC
Q ss_conf 45---70000579999786699999875687467998788883269779987672-237888875252358634589-96
Q 001603 596 EV---PSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPE-TLGQVESLEELDISGTAIRRP-PS 670 (1046)
Q Consensus 596 ~l---p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~L~~~~i~~~-p~ 670 (1046)
.. +..+..+++|+.|++++|......|..+..+++|+.|++++|......+. .+..+++|+.|++++|.+... |.
T Consensus 364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 443 (606)
T 3t6q_A 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443 (606)
T ss_dssp EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT
T ss_pred CCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHH
T ss_conf 45675221056788898989899677578887347745776878888677756521241765588898989855776877
Q ss_pred CHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 02310478636447888999999855675543346767762135898557898888966799999998853334767888
Q 001603 671 SIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLK 750 (1046)
Q Consensus 671 ~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~ 750 (1046)
.+..+++|+.|++++|...... ...+..+..+++|+.|++++|.+ .+..|..+..+++|+
T Consensus 444 ~~~~l~~L~~L~L~~n~l~~~~-------------------~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~ 503 (606)
T 3t6q_A 444 LFDGLPALQHLNLQGNHFPKGN-------------------IQKTNSLQTLGRLEILVLSFCDL-SSIDQHAFTSLKMMN 503 (606)
T ss_dssp TTTTCTTCCEEECTTCBCGGGE-------------------ECSSCGGGGCTTCCEEECTTSCC-CEECTTTTTTCTTCC
T ss_pred HHHCCCCCCEEECCCCCCCCCC-------------------CCCCHHHCCCCCCCEEECCCCCC-CCCCHHHHCCCCCCC
T ss_conf 8737887888989899888543-------------------45431240488766887999966-706864632656788
Q ss_pred EEECCCCCCCC-CCHHHHHCCCCCEECCCCCCCCCCCCCC---CCCCCEEECCCCC
Q ss_conf 55288898743-5645530245570113366356668999---9897526618974
Q 001603 751 QLNLSQNNFVT-LPASINSLFNLGQLDLEDCKRLQSMPQL---PSNLYEVQVNGCA 802 (1046)
Q Consensus 751 ~L~Ls~n~l~~-lp~~i~~l~~L~~L~L~~c~~l~~ip~l---p~~L~~L~~~~C~ 802 (1046)
.|++++|+++. .|..+..+++| .|++++|+.....|.. .++|+.+++.+|+
T Consensus 504 ~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 504 HVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp EEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred EEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCC
T ss_conf 89898980686896684756651-89876894142687662567787889677998
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=326.91 Aligned_cols=279 Identities=20% Similarity=0.303 Sum_probs=220.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHH---HCCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHHCCC---CCCCCCCCHHHH
Q ss_conf 9899928988089999999988---7066660399984400110368989999999998741038---643441000999
Q 001603 1 MMGIWGMGGLGKTTLARVAYDL---ISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLAD---ISIWNVDDGINI 74 (1046)
Q Consensus 1 vi~I~G~gGiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~---~~~~~~~~~~~~ 74 (1046)
+|+|+||||+||||||+++|++ ...+|...+||.++..... .. .....+.++..+..... ....+.......
T Consensus 149 ~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 226 (1249)
T 3sfz_A 149 WVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK-SG-LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDR 226 (1249)
T ss_dssp EEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH-HH-HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCC-HH-HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 79999189888889999986075678862788179999788572-67-99999999998655303334788777899999
Q ss_pred HHHHHCCC--EEEEEEECCCCHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHCCCCCCEEECCC-CCHHHHHHHHHHH
Q ss_conf 99752598--18999935899688877761669879998799993883568881589833486589-9967899999782
Q 001603 75 IGSRLRQK--KVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEV-LSNDEALQLFSMK 151 (1046)
Q Consensus 75 i~~~l~~k--~~LlVlDdv~~~~~l~~l~~~~~~~~~gs~IiiTtR~~~~~~~~~~~~~~~~~v~~-L~~~ea~~Lf~~~ 151 (1046)
+++.+.++ |+||||||||+.++|+.+ ++|++||||||++.++.... .....++++. |+++||++||...
T Consensus 227 l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~-~~~~~~~~~~~l~~~~a~~l~~~~ 298 (1249)
T 3sfz_A 227 LRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVM-GPKHVVPVESGLGREKGLEILSLF 298 (1249)
T ss_dssp HHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCC-SCBCCEECCSSCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCEEEEEECCCCHHHHHHH-------CCCCEEEEECCCHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999735678789999567997788763-------68978999927789987634-884379825888878899999986
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC-----------CCHHHHHHHCCCC
Q ss_conf 02799999139999999998718993489999632089996899999998741999-----------7068888622024
Q 001603 152 AFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSFLNGRSVDLWRSTLKRLKKEPP-----------NRIINILQISFDG 220 (1046)
Q Consensus 152 a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~w~~~l~~l~~~~~-----------~~i~~~l~~s~~~ 220 (1046)
++... +.+.+.+.+|+++|+|+||||+++|++|+.+. .+|..+++++..... ..+..++.+||+.
T Consensus 299 ~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~ 374 (1249)
T 3sfz_A 299 VNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEM 374 (1249)
T ss_dssp HTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHT
T ss_pred HCCCH---HHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 57981---34838899999984997799999999862480-579999999865044303465564467799999989986
Q ss_pred CCHHHHHHHCEEECCCCCC--CHHHHHHHHHHCCCCCCCCHHHEECCCEEEEECCC---EEEEHHHHHHHHHHHHHHC
Q ss_conf 5143230320350125777--87799999984699853422110013107983599---3970599999999998511
Q 001603 221 LQDLEKKIFLDVACFFKSW--DRDHVEKILEGCGFSPVIGIEVLIEKSLLTVDDGN---RLWMHDLLQELGHQIVQRQ 293 (1046)
Q Consensus 221 L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~~~~~~~~i~~L~~~~Li~~~~~~---~~~mHdli~~~~~~i~~~~ 293 (1046)
|++++|+||+++|+||+++ +.+.++++|.+++......++.|++++|++...++ +|.||+++|+|+++...++
T Consensus 375 L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 375 LREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred CCHHHHHHHHHHCCCCCCCEECHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 799999999972813799751899999885898889999999997446338963798118996689999987450678
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=324.12 Aligned_cols=433 Identities=21% Similarity=0.228 Sum_probs=273.7
Q ss_pred CCCCCHHHHCCCCCCCEEEECCCCCCC----CHHCCCCCCCEEEECCCCCCCC-CCCC-CCCCCEEEECCCCCCHHHC-C
Q ss_conf 322472533079986199738944799----4000365743898338999988-9977-7789129976888801000-1
Q 001603 338 YLSAGAKAFSQMTNLRLLKIDNLQLPE----GLEYLSNKLRLLDWHRYPLKSL-PSNF-QLEKTVEFNMCYSRIEELW-N 410 (1046)
Q Consensus 338 ~~~~~~~~f~~m~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~l~~~~i~~l~-~ 410 (1046)
.......+|.++++|+.|+++++.+.. .+..++ +|++|+++++.++.+ |..| .+.+|++|++++|.+..++ .
T Consensus 44 l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 122 (606)
T 3vq2_A 44 LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLH-HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF 122 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSS
T ss_pred CCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHH-HCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 5773754555776674886887736643977730601-068867879856304852207865378887037755544511
Q ss_pred CCCCCCCCCEEECCCCCCCC-CCC-CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC----EEECCCCCCCCCCCC-CC
Q ss_conf 01378877589767996877-789-999999889998417777840164422889850----995258999985599-67
Q 001603 411 EIKYLNMLKVMKLSHSQNLI-KTP-DFTGVPNLEELILEGCTRLHEIHPSLLLHSKLV----ILNLKDCTSLTTLPG-KI 483 (1046)
Q Consensus 411 ~~~~l~~L~~L~Ls~~~~~~-~~~-~~~~l~~L~~L~L~~c~~~~~~~~~i~~l~~L~----~L~l~~~~~l~~lp~-~~ 483 (1046)
.+..+++|++|++++|.... .+| .+.++++|++|++++|......+..++.+.+|+ .|+++++. +..++. .+
T Consensus 123 ~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~-l~~~~~~~~ 201 (606)
T 3vq2_A 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAF 201 (606)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCC-CCEECTTTT
T ss_pred CCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECCHHHHHHHHCCCCCCCEEECCCCC-CCEECCCCC
T ss_conf 3489887798968788523253068673267777887668853105733412120342002430046897-532571105
Q ss_pred CCCCCCEEECCCCCCCCCCCCCC--------------------------------------------------------C
Q ss_conf 75655445124776773210001--------------------------------------------------------2
Q 001603 484 SMKSLKTLVLSGCLKLTKKCLEF--------------------------------------------------------A 507 (1046)
Q Consensus 484 ~l~~L~~L~l~~~~~l~~~~~~~--------------------------------------------------------~ 507 (1046)
...+|+.|++++|.......+.. +
T Consensus 202 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~ 281 (606)
T 3vq2_A 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF 281 (606)
T ss_dssp TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSC
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHEECCCCCCCCCCCCCC
T ss_conf 67604335246785616677888602665652314111103677410268177666654347450123665555432223
Q ss_pred CCCCCCCEEECCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 66789883762566543235100038998699448999974230544315867678414987888677321687644605
Q 001603 508 GSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMEL 587 (1046)
Q Consensus 508 ~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L 587 (1046)
..+++|+.+.+.++.+..+| .+..+++|+.|++++|.. +.+| .+ .+++|+.|++++|.....+ .+..+++|+.|
T Consensus 282 ~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 355 (606)
T 3vq2_A 282 HCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYL 355 (606)
T ss_dssp GGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEE
T ss_pred CCCCCCCEEEECCCCCHHHH-HCCCCCCCCEEECCCCCC-CCCC-CC-CCCCCCEEECCCCCCCCCH--HHCCCCCCCEE
T ss_conf 54887898771476604435-433401177897646667-6546-67-8875564454478685310--00248988879
Q ss_pred ECCCCCCCCC---CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCC
Q ss_conf 3347456545---7000057999978669999987568746799878888326977998767-22378888752523586
Q 001603 588 FLDGTSIAEV---PSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVP-ETLGQVESLEELDISGT 663 (1046)
Q Consensus 588 ~L~~~~i~~l---p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~L~~~ 663 (1046)
++++|.+... +..+..+++|+.|++++|.. ..+|..+..+++|+.|++++|...+..+ ..+..+++|+.|++++|
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE-EEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred ECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCC-CCCHHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCC
T ss_conf 775873687752012214677554867889953-0005540688888965898870587537645646213788989689
Q ss_pred CCCCC-CCCHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 34589-96023104786364478889999998556755433467677621358985578988889667999999988533
Q 001603 664 AIRRP-PSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPND 742 (1046)
Q Consensus 664 ~i~~~-p~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~ 742 (1046)
.+... |..+..+++|+.|++++|..... .++..+..+++|+.|++++|.+ .+..|..
T Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~ 492 (606)
T 3vq2_A 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDN---------------------TLSNVFANTTNLTFLDLSKCQL-EQISWGV 492 (606)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGG---------------------EECSCCTTCTTCCEEECTTSCC-CEECTTT
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCC---------------------CHHHHHCCCCCCCEEECCCCCC-CCCCHHH
T ss_conf 78743355534778789898989837985---------------------4677604578899898988857-7648656
Q ss_pred CCCCCCCCEEECCCCCCCCC-CHHHHHCCCCCEECCCCCCCCCCCCC----CCCCCCEEECCCCC
Q ss_conf 34767888552888987435-64553024557011336635666899----99897526618974
Q 001603 743 IGNLCSLKQLNLSQNNFVTL-PASINSLFNLGQLDLEDCKRLQSMPQ----LPSNLYEVQVNGCA 802 (1046)
Q Consensus 743 l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~l~~ip~----lp~~L~~L~~~~C~ 802 (1046)
+..+++|+.|++++|+++.+ |..+..+++|+.|++++|+ ++.+|. +|.+|+.+++.+++
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred HCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCC-CCCCCHHHHHHCCCCCEEECCCCC
T ss_conf 1546468989898995787487770688768988898983-766687675210217488762898
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=310.97 Aligned_cols=423 Identities=14% Similarity=0.198 Sum_probs=244.9
Q ss_pred EEEEEEEECCCCCCCCCCCCCHHHHCCCCCCCEEEECCCCCC------C-------CHHCCCCCCCEEEECCCCCC-CCC
Q ss_conf 078999514443565532247253307998619973894479------9-------40003657438983389999-889
Q 001603 322 VVEGIIVDAYFLENEGYLSAGAKAFSQMTNLRLLKIDNLQLP------E-------GLEYLSNKLRLLDWHRYPLK-SLP 387 (1046)
Q Consensus 322 ~~~~i~l~~~~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~l~------~-------~~~~l~~~Lr~L~l~~~~l~-~lp 387 (1046)
.|..+.+.... .......+|.++++|+.|+++++.+. + .+......|| +++..+.+. ..|
T Consensus 82 ~V~~L~L~~~~-----l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~ 155 (636)
T 4eco_A 82 RVTGLSLEGFG-----ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPR 155 (636)
T ss_dssp CEEEEECTTSC-----CEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGG
T ss_pred CEEEEEECCCC-----CCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHCCCCH
T ss_conf 78899842766-----57728857856845118987688512377433453235673388888887-6577755411706
Q ss_pred CCCC--CCCCEEEECC--------------------CCCCHHHCCCCCCCCCCCEEECCCCCCCC---------------
Q ss_conf 9777--7891299768--------------------88801000101378877589767996877---------------
Q 001603 388 SNFQ--LEKTVEFNMC--------------------YSRIEELWNEIKYLNMLKVMKLSHSQNLI--------------- 430 (1046)
Q Consensus 388 ~~~~--~~~L~~L~l~--------------------~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~--------------- 430 (1046)
..+. ...+..+++. .++++.+|..+..+++|++|+|++|....
T Consensus 156 ~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp GGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 66778877776427554654101334421300101367775078777256478789886882366423221222221001
Q ss_pred ---CCCCCC--CCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCC
Q ss_conf ---789999--99988999841777784016442288985099525899998559967756554451247767732-100
Q 001603 431 ---KTPDFT--GVPNLEELILEGCTRLHEIHPSLLLHSKLVILNLKDCTSLTTLPGKISMKSLKTLVLSGCLKLTK-KCL 504 (1046)
Q Consensus 431 ---~~~~~~--~l~~L~~L~L~~c~~~~~~~~~i~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~-~~~ 504 (1046)
.++.+. ++++|++|++++|...+.+|..++.+++|+.|++++ |..+++ ..+
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-----------------------n~~l~~~~lp 292 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC-----------------------NRGISGEQLK 292 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT-----------------------CTTSCHHHHH
T ss_pred CCCCCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCEEECCC-----------------------CCCCCCCCCH
T ss_conf 02486322004468788898048857762838883499978897847-----------------------9887665335
Q ss_pred CCCCCC------CCCCEEECCCCCCCCCCH--HCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCC
Q ss_conf 012667------898837625665432351--000389986994489999742305443158676784149878886773
Q 001603 505 EFAGSM------NDLSELFLDRTTIEELPL--SIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPE 576 (1046)
Q Consensus 505 ~~~~~l------~~L~~L~l~~~~i~~lp~--~l~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~~p~ 576 (1046)
..++.+ ++|+.|+++++.++.+|. .+.++++|+.|++++|...+.+| .+..+++|+.|++++|... .+|.
T Consensus 293 ~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~ 370 (636)
T 4eco_A 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPA 370 (636)
T ss_dssp HHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCT
T ss_pred HHHHHHHCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCHH-HHCCCCCCCEEECCCCCCC-CCCH
T ss_conf 7887543046578888898979937766765554257888989690880705166-6478898898989899403-0337
Q ss_pred CCCCCCC-CCEEECCCCCCCCCCCCCCCCC--CCCEEECCCCCCCCCCCCCCC-------CCCCCCEEECCCCCCCCCCC
Q ss_conf 2168764-4605334745654570000579--999786699999875687467-------99878888326977998767
Q 001603 577 SLGSMKD-LMELFLDGTSIAEVPSSIELLT--GLQLLNLNNCSNLVRLPSCIN-------GLRSLKTLNLSGCSKLQNVP 646 (1046)
Q Consensus 577 ~l~~l~~-L~~L~L~~~~i~~lp~~l~~l~--~L~~L~L~~~~~l~~lp~~~~-------~l~~L~~L~l~~c~~l~~lp 646 (1046)
.+..+++ |+.|++++|.+..+|..+.... +|+.|++++|......|..+. .+++|+.|++++|... .+|
T Consensus 371 ~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp 449 (636)
T 4eco_A 371 NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFP 449 (636)
T ss_dssp TSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCC
T ss_pred HHHHHCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCC
T ss_conf 5651023686898529827544665533345766889774885788652442002201125898888977279668-678
Q ss_pred CC-CCCCCCCCEEECCCCCCCCCCCCHHHC--------CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22-378888752523586345899602310--------478636447888999999855675543346767762135898
Q 001603 647 ET-LGQVESLEELDISGTAIRRPPSSIFVM--------NNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPS 717 (1046)
Q Consensus 647 ~~-~~~l~~L~~L~L~~~~i~~~p~~~~~l--------~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1046)
.. +..+++|+.|++++|.++.+|...... ++|+.|++++|.... ++..
T Consensus 450 ~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------------------lp~~ 506 (636)
T 4eco_A 450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-----------------------LSDD 506 (636)
T ss_dssp THHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB-----------------------CCGG
T ss_pred HHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCCC-----------------------CCHH
T ss_conf 78871589889898979978873978840440012214773389896993881-----------------------6854
Q ss_pred CC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCC------CCCC-CCCHHHHHCCCCCEECCCCCCCCCCCCC
Q ss_conf 55--7898888966799999998853334767888552888------9874-3564553024557011336635666899
Q 001603 718 LS--GLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQ------NNFV-TLPASINSLFNLGQLDLEDCKRLQSMPQ 788 (1046)
Q Consensus 718 l~--~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~------n~l~-~lp~~i~~l~~L~~L~L~~c~~l~~ip~ 788 (1046)
+. .+++|+.|++++|.+. .+|..+..+++|+.|+|++ |++. .+|..+..+++|+.|++++|+. +.+|.
T Consensus 507 ~~~~~l~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 507 FRATTLPYLVGIDLSYNSFS--KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp GSTTTCTTCCEEECCSSCCS--SCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred HHHCCCCCCCEEECCCCCCC--CCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCC-CCCCH
T ss_conf 53445887698989899887--7682353088878788988866566731212737785699878898989947-70597
Q ss_pred -CCCCCCEEECCCCC
Q ss_conf -99897526618974
Q 001603 789 -LPSNLYEVQVNGCA 802 (1046)
Q Consensus 789 -lp~~L~~L~~~~C~ 802 (1046)
+.++|+.|++++|+
T Consensus 584 ~~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 584 KITPNISVLDIKDNP 598 (636)
T ss_dssp CCCTTCCEEECCSCT
T ss_pred HHHCCCCEEECCCCC
T ss_conf 683867899876998
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=310.86 Aligned_cols=449 Identities=16% Similarity=0.115 Sum_probs=259.2
Q ss_pred CCCCEEEECCCCCCC----CHHCCCCCCCEEEECCCCCCCCCC-CC-CCCCCEEEECCCCCCHHH-CCCCCCCCCCCEEE
Q ss_conf 986199738944799----400036574389833899998899-77-778912997688880100-01013788775897
Q 001603 350 TNLRLLKIDNLQLPE----GLEYLSNKLRLLDWHRYPLKSLPS-NF-QLEKTVEFNMCYSRIEEL-WNEIKYLNMLKVMK 422 (1046)
Q Consensus 350 ~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~ 422 (1046)
++++.|+++++.+.. .+..++ .|++|+++++.++.+++ .| .+++|++|++++|.++.+ |..+..+++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFS-ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCEECHHHCCCCC-CCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCCEEE
T ss_conf 8767887888975773754555776-674886887736643977730601068867879856304852207865378887
Q ss_pred CCCCCCCCCCC-CCCCCCCCCEEEEECCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCCC-CCCCC----CEEECCC
Q ss_conf 67996877789-99999988999841777784-016442288985099525899998559967-75655----4451247
Q 001603 423 LSHSQNLIKTP-DFTGVPNLEELILEGCTRLH-EIHPSLLLHSKLVILNLKDCTSLTTLPGKI-SMKSL----KTLVLSG 495 (1046)
Q Consensus 423 Ls~~~~~~~~~-~~~~l~~L~~L~L~~c~~~~-~~~~~i~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L----~~L~l~~ 495 (1046)
+++|......+ .+.++++|++|++++|.... .+|..++.+++|+.|++++|......+..+ .+.+| ..|++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECCHHHHHHHHCCCCCCCEEECCC
T ss_conf 03775554451134898877989687885232530686732677778876688531057334121203420024300468
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCHHCCCCCCCCEEEC--------------------------------
Q ss_conf 76773210001266789883762566543--23510003899869944--------------------------------
Q 001603 496 CLKLTKKCLEFAGSMNDLSELFLDRTTIE--ELPLSIQHLTGLVLLNL-------------------------------- 541 (1046)
Q Consensus 496 ~~~l~~~~~~~~~~l~~L~~L~l~~~~i~--~lp~~l~~l~~L~~L~l-------------------------------- 541 (1046)
|. +.......+... +|+.|+++++.+. .+|..+.++++|+.+.+
T Consensus 191 n~-l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 191 NP-IDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp CC-CCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred CC-CCEECCCCCCCC-EEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHEEC
T ss_conf 97-532571105676-0433524678561667788860266565231411110367741026817766665434745012
Q ss_pred -CCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf -8999974230544315867678414987888677321687644605334745654570000579999786699999875
Q 001603 542 -KDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVR 620 (1046)
Q Consensus 542 -~~~~~l~~l~~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~ 620 (1046)
..+...+..+. +..+++|+.|+++++.. ..+| .+..+++|+.|++.+|.+..+| .+ .+++|+.|++++|.....
T Consensus 269 ~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~-~~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 269 TYTNDFSDDIVK-FHCLANVSAMSLAGVSI-KYLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp CCCTTCCGGGGS-CGGGTTCSEEEEESCCC-CCCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEE
T ss_pred CCCCCCCCCCCC-CCCCCCCCEEEECCCCC-HHHH-HCCCCCCCCEEECCCCCCCCCC-CC-CCCCCCEEECCCCCCCCC
T ss_conf 366555543222-35488789877147660-4435-4334011778976466676546-67-887556445447868531
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCEEECCCCCCCCCCC--CCC
Q ss_conf 687467998788883269779987--6722378888752523586345899602310478636447888999999--855
Q 001603 621 LPSCINGLRSLKTLNLSGCSKLQN--VPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSST--SWH 696 (1046)
Q Consensus 621 lp~~~~~l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~L~~~~i~~~p~~~~~l~~L~~L~l~~c~~~~~~~--~~~ 696 (1046)
. .+..+++|+.|++++|..... .+..+..+++|+.|++++|.+..+|..+..+++|+.|++++|......+ .+.
T Consensus 344 ~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 344 F--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp C--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred H--HHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHHH
T ss_conf 0--00248988879775873687752012214677554867889953000554068888896589887058753764564
Q ss_pred CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CHHHHHCCCCCE
Q ss_conf 67554334676776-2135898557898888966799999998853334767888552888987435-645530245570
Q 001603 697 WHFPFNLMGQRSYP-VALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTL-PASINSLFNLGQ 774 (1046)
Q Consensus 697 ~~~~~~~~~~~~~~-~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~ 774 (1046)
....+......... ....+..+..+++|+.|++++|.+....+|..+..+++|+.|++++|.++.+ |..+..+++|+.
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 501 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCE
T ss_conf 62137889896897874335553477878989898983798546776045788998989888577648656154646898
Q ss_pred ECCCCCCCCCCCCCC---CCCCCEEECCCCCCCCCCCC
Q ss_conf 113366356668999---98975266189744433356
Q 001603 775 LDLEDCKRLQSMPQL---PSNLYEVQVNGCASLVTLSG 809 (1046)
Q Consensus 775 L~L~~c~~l~~ip~l---p~~L~~L~~~~C~sL~~~~~ 809 (1046)
|++++|+....+|.. .++|+.|++.+|. ++.++.
T Consensus 502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~ 538 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKG 538 (606)
T ss_dssp EECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEES
T ss_pred EECCCCCCCCCCHHHCCCCCCCCEEECCCCC-CCCCCH
T ss_conf 9898995787487770688768988898983-766687
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=310.39 Aligned_cols=446 Identities=20% Similarity=0.184 Sum_probs=280.8
Q ss_pred EEEECCCCCCCCHHCCCCCCCEEEECCCCCCCCCC-CC-CCCCCEEEECCCCCCHHH-CCCCCCCCCCCEEECCCCCCCC
Q ss_conf 99738944799400036574389833899998899-77-778912997688880100-0101378877589767996877
Q 001603 354 LLKIDNLQLPEGLEYLSNKLRLLDWHRYPLKSLPS-NF-QLEKTVEFNMCYSRIEEL-WNEIKYLNMLKVMKLSHSQNLI 430 (1046)
Q Consensus 354 ~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~~~ 430 (1046)
.++..+..+..-+..+|..+++|+++++.++.+++ .| .+++|++|++++|.+..+ +..+..+++|++|++++|....
T Consensus 16 ~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 95 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF 95 (606)
T ss_dssp EEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE
T ss_pred EEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCC
T ss_conf 37777798062867789867589815873471796672567665289788983552485113684336764488985654
Q ss_pred CCC-CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 789-99999988999841777784016442288985099525899998-5599677565544512477677321000126
Q 001603 431 KTP-DFTGVPNLEELILEGCTRLHEIHPSLLLHSKLVILNLKDCTSLT-TLPGKISMKSLKTLVLSGCLKLTKKCLEFAG 508 (1046)
Q Consensus 431 ~~~-~~~~l~~L~~L~L~~c~~~~~~~~~i~~l~~L~~L~l~~~~~l~-~lp~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 508 (1046)
..| .+.++++|++|++++|......+..++.+++|++|++++|.... ..|....+++|+.|++++| .+....+..++
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 174 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMS 174 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHH
T ss_pred CCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCCCHHHHH
T ss_conf 58655234421537652126766578101223782238988798341147654568765687776568-44554965633
Q ss_pred CCCCCC--EEECCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHH--------------------------HHHCCC--
Q ss_conf 678988--37625665432351000389986994489999742305--------------------------443158--
Q 001603 509 SMNDLS--ELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSH--------------------------TLRRLQ-- 558 (1046)
Q Consensus 509 ~l~~L~--~L~l~~~~i~~lp~~l~~l~~L~~L~l~~~~~l~~l~~--------------------------~~~~l~-- 558 (1046)
.+++|+ .++++++.+..++........|+.|++++|........ .+..+.
T Consensus 175 ~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~ 254 (606)
T 3t6q_A 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254 (606)
T ss_dssp TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGS
T ss_pred HHCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHHCC
T ss_conf 22156403896679814754866730010013556772667777651335644220020110264122686674303207
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 67678414987888677321687644605334745654570000579999786699999875687467998788883269
Q 001603 559 CLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSG 638 (1046)
Q Consensus 559 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~ 638 (1046)
+|+.|++++|......+..+..+++|+.|++++|.+..+|..+..+++|+.|++++|......|..+..+++|+.|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred CEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCC
T ss_conf 50599944576585577774456678889562882677782141654688897716876867602330157689888989
Q ss_pred CCCCCCCCCC-CCCCCCCCEEECCCCCCCCC---CCCHHHCCCCCEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCC-
Q ss_conf 7799876722-37888875252358634589---96023104786364478889999998-556755433467677621-
Q 001603 639 CSKLQNVPET-LGQVESLEELDISGTAIRRP---PSSIFVMNNLKTLSFSGCNGPPSSTS-WHWHFPFNLMGQRSYPVA- 712 (1046)
Q Consensus 639 c~~l~~lp~~-~~~l~~L~~L~L~~~~i~~~---p~~~~~l~~L~~L~l~~c~~~~~~~~-~~~~~~~~~~~~~~~~~~- 712 (1046)
|.....++.. ++.+++|+.|++++|.+... +..+..+++|+.|++++|......+. +.....+...........
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred CCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC
T ss_conf 97444346245506675898878899666456752210567888989898996775788873477457768788886777
Q ss_pred CCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC--C--CHHHHHCCCCCEECCCCCCCCCCCC
Q ss_conf 358-9855789888896679999999885333476788855288898743--5--6455302455701133663566689
Q 001603 713 LML-PSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVT--L--PASINSLFNLGQLDLEDCKRLQSMP 787 (1046)
Q Consensus 713 ~~~-~~l~~l~~L~~L~Ls~~~l~~~~ip~~l~~l~~L~~L~Ls~n~l~~--l--p~~i~~l~~L~~L~L~~c~~l~~ip 787 (1046)
..+ ..+..+++|+.|++++|.+ .+..|..+..+++|+.|++++|.++. + +..+..+++|+.|++++|+.....|
T Consensus 415 ~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 415 KDAQSPFQNLHLLKVLNLSHSLL-DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CTTCCTTTTCTTCCEEECTTCCC-BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CCCCHHHHCCCCCCEEECCCCCC-CCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCH
T ss_conf 56521241765588898989855-77687787378878889898998885434543124048876688799996670686
Q ss_pred CC---CCCCCEEECCCC
Q ss_conf 99---989752661897
Q 001603 788 QL---PSNLYEVQVNGC 801 (1046)
Q Consensus 788 ~l---p~~L~~L~~~~C 801 (1046)
.. .++|+.|++.+|
T Consensus 494 ~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp TTTTTCTTCCEEECCSS
T ss_pred HHHCCCCCCCEEECCCC
T ss_conf 46326567888989898
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=309.25 Aligned_cols=273 Identities=16% Similarity=0.153 Sum_probs=122.9
Q ss_pred HCCCCC--CCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEEEECCC-CCC-CCCCCCCCC------CCCCEEECCCCCCC
Q ss_conf 001013--788775897679968777899-9999988999841777-784-016442288------98509952589999
Q 001603 408 LWNEIK--YLNMLKVMKLSHSQNLIKTPD-FTGVPNLEELILEGCT-RLH-EIHPSLLLH------SKLVILNLKDCTSL 476 (1046)
Q Consensus 408 l~~~~~--~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~c~-~~~-~~~~~i~~l------~~L~~L~l~~~~~l 476 (1046)
+|..+. .+++|++|++++|.....+|. +.++++|++|++++|. ... .+|..++.+ ++|+.|++++|..
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l- 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL- 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC-
T ss_pred CCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCC-
T ss_conf 8632200446878889804885776283888349997889784798876653357887543046578888898979937-
Q ss_pred CCCCC--C-CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHCCCCCC-CCEEECCCCCCCCCCHH
Q ss_conf 85599--6-77565544512477677321000126678988376256654323510003899-86994489999742305
Q 001603 477 TTLPG--K-ISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTG-LVLLNLKDCKNLKSLSH 552 (1046)
Q Consensus 477 ~~lp~--~-~~l~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~l~~l~~-L~~L~l~~~~~l~~l~~ 552 (1046)
..+|. . ..+++|+.|++++| .+.+..+ .++.+++|+.|.++++.++.+|..+..+++ |+.|++++|... .+|.
T Consensus 318 ~~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGMLECLYN-QLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp SSCCCHHHHTTCTTCCEEECCSC-CCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred CCCCCHHHHCCCCCCCEEECCCC-CCCCCHH-HHCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCEEECCCCCCC-CCCH
T ss_conf 76676555425788898969088-0705166-6478898898989899403033756510236868985298275-4466
Q ss_pred HHHCCC--CCCEEECCCCCCCCCCCCCCC-------CCCCCCEEECCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCC
Q ss_conf 443158--676784149878886773216-------8764460533474565457000-057999978669999987568
Q 001603 553 TLRRLQ--CLKNLTLSGCSKLKKFPESLG-------SMKDLMELFLDGTSIAEVPSSI-ELLTGLQLLNLNNCSNLVRLP 622 (1046)
Q Consensus 553 ~~~~l~--~L~~L~L~~~~~~~~~p~~l~-------~l~~L~~L~L~~~~i~~lp~~l-~~l~~L~~L~L~~~~~l~~lp 622 (1046)
.+..+. +|+.|++++|...+..|..+. .+.+|+.|++++|.+..+|..+ ..+++|+.|++++|... .+|
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~ 473 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIP 473 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCC
T ss_pred HHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCC
T ss_conf 5533345766889774885788652442002201125898888977279668678788715898898989799788-739
Q ss_pred CCCCC--------CCCCCEEECCCCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCCHHHCCCCCEEECCCC
Q ss_conf 74679--------98788883269779987672237--888875252358634589960231047863644788
Q 001603 623 SCING--------LRSLKTLNLSGCSKLQNVPETLG--QVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGC 686 (1046)
Q Consensus 623 ~~~~~--------l~~L~~L~l~~c~~l~~lp~~~~--~l~~L~~L~L~~~~i~~~p~~~~~l~~L~~L~l~~c 686 (1046)
..+.. +++|+.|++++|... .+|..+. .+++|+.|++++|.++++|..+..+++|+.|++++|
T Consensus 474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 474 KNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp SSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSC
T ss_pred HHHHCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEECCCC
T ss_conf 7884044001221477338989699388-168545344588769898989988776823530888787889888
Done!