Your job contains 1 sequence.
>001607
MLEEDLPDLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTL
FYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQ
VTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRS
TFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEI
TRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD
RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPI
QRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHV
SDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSD
ALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIE
GEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNL
TEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAED
PSGHLSDLSENGFNGDRKSDCCVSSSSFDDASLITVCENLKQKYLSGFSVKLSVAQQEFR
KSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKSRALRTAS
RYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDG
PICVHCELDESFQDYEARLFRLKKSQGDIASAEEAVDLQKKNSSLNRFYWYLSQPNKNST
SSSVGNEEIKRRDVRETVVVSKSPSELEVILGVIKNYCKTQLGREAISASSKQLHILEAM
RKEYANARSLATAQAQFLRAHDEIRMATTRLHLKEDDNDTSVDALSPDELASASVTNSSE
KFISMTLLSQVKGKLRYLKVSTECF
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001607
(1045 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2064786 - symbol:AT2G40770 species:3702 "Arabi... 2299 1.8e-238 1
UNIPROTKB|E1C5L6 - symbol:SHPRH "Uncharacterized protein"... 779 5.8e-117 5
UNIPROTKB|E1C615 - symbol:SHPRH "Uncharacterized protein"... 779 5.8e-117 5
MGI|MGI:1917581 - symbol:Shprh "SNF2 histone linker PHD R... 753 2.6e-115 5
UNIPROTKB|E2R8G0 - symbol:SHPRH "Uncharacterized protein"... 753 4.0e-114 5
UNIPROTKB|Q149N8 - symbol:SHPRH "E3 ubiquitin-protein lig... 749 8.5e-114 5
UNIPROTKB|E1BLB1 - symbol:SHPRH "Uncharacterized protein"... 764 5.7e-112 5
UNIPROTKB|F1S736 - symbol:SHPRH "Uncharacterized protein"... 769 1.7e-106 4
UNIPROTKB|K4DI94 - symbol:SHPRH "SNF2 histone linker PHD ... 726 2.0e-103 5
RGD|1310342 - symbol:Shprh "SNF2 histone linker PHD RING ... 711 1.0e-102 5
DICTYBASE|DDB_G0287171 - symbol:DDB_G0287171 "CHR group p... 623 5.6e-74 4
POMBASE|SPAC144.05 - symbol:SPAC144.05 "ATP-dependent DNA... 326 2.1e-36 4
UNIPROTKB|G4N1L6 - symbol:MGG_07487 "ATP-dependent DNA he... 338 9.6e-33 3
ASPGD|ASPL0000031617 - symbol:AN10707 species:162425 "Eme... 346 3.5e-32 3
TAIR|locus:2158357 - symbol:AT5G43530 species:3702 "Arabi... 239 5.4e-32 5
FB|FBgn0035689 - symbol:CG7376 species:7227 "Drosophila m... 366 4.2e-30 2
MGI|MGI:1196437 - symbol:Hltf "helicase-like transcriptio... 234 1.3e-28 5
TAIR|locus:2162504 - symbol:RAD5 species:3702 "Arabidopsi... 260 1.4e-27 3
RGD|1309031 - symbol:Hltf "helicase-like transcription fa... 234 1.4e-27 5
UNIPROTKB|E2R9I5 - symbol:HLTF "Uncharacterized protein" ... 225 3.1e-27 6
UNIPROTKB|I3LM88 - symbol:HLTF "Uncharacterized protein" ... 225 5.0e-27 6
UNIPROTKB|F1MLM2 - symbol:HLTF "Uncharacterized protein" ... 219 6.2e-26 5
ASPGD|ASPL0000056426 - symbol:AN0044 species:162425 "Emer... 226 1.7e-25 3
WB|WBGene00010061 - symbol:F54E12.2 species:6239 "Caenorh... 297 1.8e-25 2
UNIPROTKB|Q14527 - symbol:HLTF "Helicase-like transcripti... 222 2.6e-25 6
ZFIN|ZDB-GENE-030131-3306 - symbol:hltf "helicase-like tr... 213 7.8e-25 3
POMBASE|SPAC13G6.01c - symbol:rad8 "ubiquitin-protein lig... 188 2.5e-24 4
DICTYBASE|DDB_G0272082 - symbol:DDB_G0272082 "CHR group p... 206 3.4e-24 6
UNIPROTKB|F1N2E8 - symbol:TTF2 "Uncharacterized protein" ... 283 4.9e-23 3
TAIR|locus:2008096 - symbol:AT1G50410 species:3702 "Arabi... 211 3.9e-22 5
ZFIN|ZDB-GENE-110411-73 - symbol:si:ch1073-303l5.1 "si:ch... 271 5.7e-22 3
UNIPROTKB|E2RGF7 - symbol:TTF2 "Uncharacterized protein" ... 277 6.7e-22 3
TAIR|locus:2089318 - symbol:AT3G16600 species:3702 "Arabi... 244 6.9e-22 4
UNIPROTKB|I3L7V5 - symbol:TTF2 "Uncharacterized protein" ... 287 9.5e-22 3
UNIPROTKB|F1SAY2 - symbol:TTF2 "Uncharacterized protein" ... 287 1.0e-21 3
POMBASE|SPBC582.10c - symbol:SPBC582.10c "ATP-dependent D... 245 1.4e-21 2
WB|WBGene00020235 - symbol:T05A12.4 species:6239 "Caenorh... 306 1.5e-21 2
SGD|S000004022 - symbol:RAD5 "DNA helicase" species:4932 ... 235 2.8e-21 4
ASPGD|ASPL0000065871 - symbol:AN7538 species:162425 "Emer... 216 3.1e-21 4
TAIR|locus:2095360 - symbol:AT3G20010 species:3702 "Arabi... 205 3.8e-21 4
UNIPROTKB|E1C366 - symbol:TTF2 "Uncharacterized protein" ... 264 4.1e-21 2
UNIPROTKB|Q9UNY4 - symbol:TTF2 "Transcription termination... 265 4.2e-21 2
UNIPROTKB|E1C1L9 - symbol:TTF2 "Uncharacterized protein" ... 264 4.3e-21 2
UNIPROTKB|D4A1K7 - symbol:Ttf2 "Protein Ttf2" species:101... 261 7.9e-21 2
MGI|MGI:1921294 - symbol:Ttf2 "transcription termination ... 261 1.4e-20 2
CGD|CAL0000717 - symbol:orf19.5675 species:5476 "Candida ... 266 1.8e-20 3
TAIR|locus:2008470 - symbol:EDA16 "embryo sac development... 205 5.9e-20 5
TAIR|locus:2207175 - symbol:AT1G05120 species:3702 "Arabi... 138 1.0e-19 5
SGD|S000000318 - symbol:RAD16 "Protein that binds damaged... 236 2.0e-19 4
GENEDB_PFALCIPARUM|MAL13P1.216 - symbol:MAL13P1.216 "DNA ... 179 2.8e-19 5
CGD|CAL0006085 - symbol:RAD16 species:5476 "Candida albic... 236 2.8e-19 5
POMBASE|SPAC17A2.12 - symbol:rrp1 "ATP-dependent DNA heli... 243 9.4e-19 2
FB|FBgn0002542 - symbol:lds "lodestar" species:7227 "Dros... 179 9.7e-19 4
UNIPROTKB|H7C5K0 - symbol:HLTF "Helicase-like transcripti... 222 1.0e-18 3
POMBASE|SPBC23E6.02 - symbol:rrp2 "ATP-dependent DNA heli... 214 2.8e-18 3
CGD|CAL0004569 - symbol:orf19.2097 species:5476 "Candida ... 205 3.6e-18 3
WB|WBGene00020742 - symbol:T23H2.3 species:6239 "Caenorha... 240 1.6e-17 4
POMBASE|SPCC330.01c - symbol:rhp16 "Rad16 homolog Rhp16" ... 186 1.2e-16 4
SGD|S000004237 - symbol:IRC20 "Putative helicase" species... 213 1.3e-16 3
DICTYBASE|DDB_G0282115 - symbol:DDB_G0282115 "CHR group p... 260 1.6e-15 4
ASPGD|ASPL0000030172 - symbol:AN5483 species:162425 "Emer... 218 2.7e-15 4
SGD|S000005717 - symbol:ULS1 "Protein involved in proteol... 198 2.7e-14 2
UNIPROTKB|G4MPA7 - symbol:MGG_07014 "DNA repair protein R... 217 3.2e-14 5
GENEDB_PFALCIPARUM|PFL2440w - symbol:PFL2440w "DNA repair... 150 1.5e-13 6
UNIPROTKB|Q8I4S6 - symbol:PFL2440w "DNA repair protein rh... 150 1.5e-13 6
ASPGD|ASPL0000008250 - symbol:AN10794 species:162425 "Eme... 197 4.4e-13 2
UNIPROTKB|G4NIT2 - symbol:MGG_12155 "Uncharacterized prot... 165 4.6e-12 2
DICTYBASE|DDB_G0281949 - symbol:helE "CHR group protein" ... 183 8.0e-12 3
FB|FBgn0037531 - symbol:CG10445 species:7227 "Drosophila ... 122 9.6e-12 4
ASPGD|ASPL0000049992 - symbol:AN2256 species:162425 "Emer... 115 4.6e-10 4
UNIPROTKB|Q8EGF3 - symbol:SO_1651 "Helicase/SNF2 family d... 124 1.4e-09 3
TIGR_CMR|SO_1651 - symbol:SO_1651 "Snf2 family protein" s... 124 1.4e-09 3
SGD|S000005831 - symbol:ISW2 "ATP-dependent DNA transloca... 134 1.8e-09 5
UNIPROTKB|Q47YP1 - symbol:CPS_3404 "Snf2 family protein" ... 151 2.3e-09 2
TIGR_CMR|CPS_3404 - symbol:CPS_3404 "Snf2 family protein"... 151 2.3e-09 2
UNIPROTKB|G4NCV5 - symbol:MGG_01012 "ISWI chromatin-remod... 129 2.3e-09 5
TAIR|locus:504955712 - symbol:AT3G54460 species:3702 "Ara... 121 9.3e-09 4
CGD|CAL0000073 - symbol:orf19.1667 species:5476 "Candida ... 182 9.8e-09 2
UNIPROTKB|Q5AJC4 - symbol:CaO19.1667 "Putative uncharacte... 182 9.8e-09 2
DICTYBASE|DDB_G0292948 - symbol:isw "CHR group protein" s... 139 1.4e-08 4
TAIR|locus:2182978 - symbol:CHR17 "chromatin remodeling f... 157 1.6e-08 5
TIGR_CMR|BA_5487 - symbol:BA_5487 "helicase, putative" sp... 121 1.9e-08 4
RGD|1311935 - symbol:Chd1l "chromodomain helicase DNA bin... 113 3.6e-08 5
GENEDB_PFALCIPARUM|PF11_0053 - symbol:PF11_0053 "PfSNF2L"... 124 4.0e-08 4
UNIPROTKB|Q8IIW0 - symbol:PF11_0053 "PfSNF2L" species:363... 124 4.0e-08 4
WB|WBGene00004204 - symbol:swsn-4 species:6239 "Caenorhab... 122 5.1e-08 7
ASPGD|ASPL0000061821 - symbol:AN10043 species:162425 "Eme... 132 5.8e-08 2
UNIPROTKB|I3LTT5 - symbol:SMARCA1 "Uncharacterized protei... 135 6.1e-08 3
WB|WBGene00002169 - symbol:isw-1 species:6239 "Caenorhabd... 140 7.4e-08 3
UNIPROTKB|O53499 - symbol:helZ "PROBABLE HELICASE HELZ" s... 117 7.9e-08 5
TAIR|locus:2040184 - symbol:PKL "PICKLE" species:3702 "Ar... 125 9.8e-08 5
UNIPROTKB|F1P0A4 - symbol:SMARCA5 "Uncharacterized protei... 130 1.0e-07 3
UNIPROTKB|H0YMN5 - symbol:INO80 "DNA helicase INO80" spec... 134 1.1e-07 3
MGI|MGI:1915308 - symbol:Chd1l "chromodomain helicase DNA... 111 1.1e-07 5
UNIPROTKB|E1BCV0 - symbol:HELLS "Uncharacterized protein"... 121 1.3e-07 4
SGD|S000001388 - symbol:STH1 "ATPase component of the RSC... 112 1.4e-07 4
ZFIN|ZDB-GENE-070705-296 - symbol:si:dkey-148b12.1 "si:dk... 136 1.7e-07 3
UNIPROTKB|K7GNV1 - symbol:SMARCA1 "Uncharacterized protei... 135 1.8e-07 3
UNIPROTKB|F6TQG2 - symbol:SMARCA1 "Probable global transc... 135 1.8e-07 4
UNIPROTKB|F1Q2U2 - symbol:CHD1L "Uncharacterized protein"... 119 1.9e-07 5
WARNING: Descriptions of 190 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2064786 [details] [associations]
symbol:AT2G40770 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR013026
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS50293
PROSITE:PS51194 SMART:SM00184 SMART:SM00249 SMART:SM00490
GO:GO:0005524 EMBL:CP002685 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR014001 SMART:SM00487 KO:K15710
OMA:NVESLYY IPI:IPI00517573 RefSeq:NP_181609.4 UniGene:At.25019
UniGene:At.27873 ProteinModelPortal:F4II36 PRIDE:F4II36
EnsemblPlants:AT2G40770.1 GeneID:818674 KEGG:ath:AT2G40770
Uniprot:F4II36
Length = 1664
Score = 2299 (814.3 bits), Expect = 1.8e-238, P = 1.8e-238
Identities = 445/667 (66%), Positives = 527/667 (79%)
Query: 14 RPYQRRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYSTLFYNPFSGSLSLSP 73
RPYQRRAAYWMVQRE+GD PL + + FLD+ + +F NPFSG++SL+P
Sbjct: 289 RPYQRRAAYWMVQRERGDPITLGDKEDNQFISPLSISVGFLDSATKMFLNPFSGNISLTP 348
Query: 74 DYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLK 133
+Y S + GGILADEMGLGKTVELLACIF+HRKPA D+ I + VTD LRRLK
Sbjct: 349 EYFSPRIQGGILADEMGLGKTVELLACIFSHRKPAEDE-ISVSNGSSVTDVLNAGLRRLK 407
Query: 134 RERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFEL-KKHTRKK- 191
RERVECICGAVSES KYKG+WVQCD+CDAWQHADCVGYSP+GK ++ + + +K ++KK
Sbjct: 408 RERVECICGAVSESHKYKGVWVQCDLCDAWQHADCVGYSPKGKGKKDSQHIDEKASQKKS 467
Query: 192 --DMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSL 249
D T I+VR+GE+ICQ C EL++ T SP++TGATLIVCPAPIL QW +EITRHTR GSL
Sbjct: 468 KKDATEIIVREGEYICQMCSELLQVTASPISTGATLIVCPAPILPQWHSEITRHTRLGSL 527
Query: 250 KTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKR 309
TCIYEG RN+SLS+ ++DI+EL+ ADIVLTTYDVLKEDL+HD DRH+GDR +RFQKR
Sbjct: 528 ITCIYEGVRNASLSEEPMIDITELLNADIVLTTYDVLKEDLTHDFDRHDGDRHCLRFQKR 587
Query: 310 YPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYG 369
YPVIPT LTRIFWWRICLDEAQMVESNAAAATEMALRLY KHRWCITGTPIQRKLDDL+G
Sbjct: 588 YPVIPTPLTRIFWWRICLDEAQMVESNAAAATEMALRLYTKHRWCITGTPIQRKLDDLFG 647
Query: 370 LLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQ 429
LL+FLK++PF +SRWWIEVIRDPYE D AMEFTHKFFK++M RSSKVHV+DELQLPPQ
Sbjct: 648 LLKFLKANPFDVSRWWIEVIRDPYERRDTKAMEFTHKFFKQVMWRSSKVHVADELQLPPQ 707
Query: 430 EECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITH 489
EECVSWL FS IEEHFY QH+TCV YAREVI+ LK +ILKR GH SSD NP++TH
Sbjct: 708 EECVSWLKFSAIEEHFYSRQHDTCVSYAREVIETLKRDILKR---GHTSSD---NPLVTH 761
Query: 490 AEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLV 549
AEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSP++M+EILMVL+ KT+ EGEEALR L+
Sbjct: 762 AEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLVKKTQSEGEEALRVLI 821
Query: 550 MALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEILPMVAN 609
+ALNG+A IA++++ S+AVSLYKEA+++ EEH+EDFRLDPLLNIH+ HNL EILPM +
Sbjct: 822 VALNGIAAIAMLKQEFSEAVSLYKEALSITEEHAEDFRLDPLLNIHILHNLAEILPMAKS 881
Query: 610 CATELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLS 669
+LS + G E KI + A K QR++ E+ +E +
Sbjct: 882 YGGKLSAS-----GRPET--KIDVKDDDHHRASKRQRINELESLTHDSSETVHQREAIAP 934
Query: 670 ENGFNGD 676
+NG D
Sbjct: 935 DNGLKKD 941
Score = 1455 (517.2 bits), Expect = 4.8e-149, P = 4.8e-149
Identities = 308/574 (53%), Positives = 404/574 (70%)
Query: 469 LKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDE 528
LKR++ + + NP++THAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSP++M+E
Sbjct: 742 LKRDILKRGHTSS-DNPLVTHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPMTMEE 800
Query: 529 ILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRL 588
ILMVL+ KT+ EGEEALR L++ALNG+A IA++++ S+AVSLYKEA+++ EEH+EDFRL
Sbjct: 801 ILMVLVKKTQSEGEEALRVLIVALNGIAAIAMLKQEFSEAVSLYKEALSITEEHAEDFRL 860
Query: 589 DPLLNIHLHHNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVS 648
DPLLNIH+ HNL EILPM + +LS + G E KI + A K QR++
Sbjct: 861 DPLLNIHILHNLAEILPMAKSYGGKLSAS-----GRPET--KIDVKDDDHHRASKRQRIN 913
Query: 649 REENSDFTDAEDPSGHLSDLSENGFNGDRKXXXXXXXXXXXXXXLITVCENLKQKYLSGF 708
E+ +E + +NG D + L VC+ LK KYLS F
Sbjct: 914 ELESLTHDSSETVHQREAIAPDNGLKKDGECHEECKT-------LDIVCDTLKVKYLSAF 966
Query: 709 SVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISG 768
+ KLS AQ EF+KSY QV +L + KQ S WWL+AL E NKDFS+EL RKIEEA+ G
Sbjct: 967 NSKLSAAQHEFKKSYNQVSESLSNMGKQRSVWWLDALQLTEQNKDFSSELTRKIEEALHG 1026
Query: 769 SLNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRM 828
+LN S + R +SR+R+I G+ H+Q+ +D LE SRK ++DR+LEIDQTMEKPK ED++R+
Sbjct: 1027 NLNNSSSSRESSRFRTIHGMKLHLQTCMDMLERSRKKVIDRILEIDQTMEKPKLEDIERI 1086
Query: 829 RHCRICYGVGDGPICVHCELDESFQDYEARLFRLKKSQ-G--DIASAEEAVDLQKKNSSL 885
+C+ C DGP C+HCELDE FQ+YEARLFRL KS+ G +IA+AEE V LQKK +
Sbjct: 1087 SNCKYCNKNSDGPPCIHCELDELFQEYEARLFRLNKSRRGVMEIAAAEETVHLQKKRDAR 1146
Query: 886 NRFYWYLSQPNKNSTSSSVGNEEIKRRDVRETVVVSKSPSELEVILGVIKNYCKTQLGRE 945
N F + LS +K+ +S +EE +R+ + VV+SKSPSE E++LGVI+N+CKT L RE
Sbjct: 1147 NLFLFGLSSRSKDLNASRGDDEEPTKRNAGDIVVLSKSPSETEIVLGVIRNHCKTHLDRE 1206
Query: 946 AISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDEIRMATTRLHLKEDDNDTSVDAL 1005
+ A++K LH LE MRKEY +AR LA QAQ LRA+DEI M+T RL L+E ++DTS+ AL
Sbjct: 1207 SKLAATKHLHTLEVMRKEYVHARVLARDQAQLLRAYDEINMSTMRLQLRESEDDTSIYAL 1266
Query: 1006 SPDELASASVTNSSEKFISMTLLSQVKGKLRYLK 1039
DEL ASV N+++KF++ + L +KGKLRYLK
Sbjct: 1267 GRDELDVASVLNTNDKFMAQSSLLSIKGKLRYLK 1300
>UNIPROTKB|E1C5L6 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF00628 Pfam:PF13639
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:AADN02025316 IPI:IPI00575038 Ensembl:ENSGALT00000020082
Uniprot:E1C5L6
Length = 1682
Score = 779 (279.3 bits), Expect = 5.8e-117, Sum P(5) = 5.8e-117
Identities = 181/454 (39%), Positives = 255/454 (56%)
Query: 207 WCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTS 266
+C + A PV+TGATLI+ P+ I QW EI RH R SL+ +Y+G +
Sbjct: 702 YCPHCLVAM-KPVSTGATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKHGFLQPH 760
Query: 267 IMDISELVGADIVLTTYDVLKEDLSHDSDRH---EGDRRFMRFQKRYPVIPTLLTRIFWW 323
+ L D+V+TTYDVL+ +L++ H E RRF R QKRY IP+ L + WW
Sbjct: 761 M-----LAEQDVVITTYDVLRTELNYVDIPHSNSEDGRRF-RNQKRYMAIPSPLVAVEWW 814
Query: 324 RICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISR 383
RICLDEAQMVE A A EMALRL +RWC++GTP+QR L+DLYGL+ FL P+ +
Sbjct: 815 RICLDEAQMVECTTAKAAEMALRLSGINRWCVSGTPVQRGLEDLYGLVLFLGIDPYWVKH 874
Query: 384 WWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEE 443
WW +++ PY + + + +IM RS+K V D++Q+PPQ E + WL FSP+E
Sbjct: 875 WWDQLLYRPYCRKNSQPL---YSLIAKIMWRSAKKDVIDQIQIPPQTENIHWLHFSPVER 931
Query: 444 HFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLR 503
HFY QHE C A ++++ D LK + +L +T +L LL+LR
Sbjct: 932 HFYHRQHEVCCQDALAKLRKISDWTLKLS--------SLDRRTVT-----SILYPLLRLR 978
Query: 504 QACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEK 563
QACCHPQ LQ+S ++M+E+L L K + E EEA R+LV ALNGLAGI +I+
Sbjct: 979 QACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCRTECEEAHRQLVCALNGLAGIHIIKG 1038
Query: 564 NLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEIL-------PMV--ANCATEL 614
+ A LY+E + EEH E + D L +H HNL E+L P + + + E
Sbjct: 1039 EYALAAELYREVLRSSEEHKEKLKTDSLQRLHSTHNLMELLAKHTGIPPTLRDSQLSAEA 1098
Query: 615 SQNEQHFPGCSE-KAFKIH-SIETCDENARKCQR 646
Q QH+ S + + H +++ + R+ QR
Sbjct: 1099 EQLRQHYMSKSNAEVAEAHQALQPVLQTIRELQR 1132
Score = 152 (58.6 bits), Expect = 5.8e-117, Sum P(5) = 5.8e-117
Identities = 51/229 (22%), Positives = 110/229 (48%)
Query: 698 ENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAE 757
E L+Q Y+S + +++ A Q + +Q L + S WWL+ + A E
Sbjct: 1099 EQLRQHYMSKSNAEVAEAHQALQP-VLQTIRELQRKIHSSSPWWLDVIQTAI-QYAIDEE 1156
Query: 758 LIRKIEEAISGSLNK-SRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQT 816
L+++++ I+ + + + L A ++R GL Y + + +D+++ +K + + + +
Sbjct: 1157 LVQRVQNEITCNYKQQTNKLSMADKFRDCRGLQYLLTTQMDEVKKFQKIVREAV----KN 1212
Query: 817 MEKPKEEDMDRMRHCRICY-GVGDGPI--CVHCELDESFQDYEARLFRLKKSQGDIASAE 873
+E P +++ + IC+ P+ CV C+ DE F +YE++LF +G +A E
Sbjct: 1213 LEGPPSKEV--IEAATICHLRPVRLPLNNCVFCKADELFTEYESKLFS-HTVKGQMAIFE 1269
Query: 874 EAVD-----LQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDVRET 917
E ++ + + + +R W S+ + + + + + R DV+ T
Sbjct: 1270 EMIEDEEGLVDDRLPTTSRGLWATSETER-ALKAILSFAKAHRLDVKLT 1317
Score = 139 (54.0 bits), Expect = 5.8e-117, Sum P(5) = 5.8e-117
Identities = 38/101 (37%), Positives = 48/101 (47%)
Query: 14 RPYQRRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYSTLFYNPFSGSLSLSP 73
RPYQ A WM+ RE L + LD ++YNPF+G +
Sbjct: 308 RPYQSEAVNWMLHRENFTNTPGGENALHF----LWREVITLDGVK-IYYNPFTGCVIREY 362
Query: 74 DYTSSYVFGGILADEMGLGKTVELLACIFAH-RKPASDDSI 113
+ GGILADEMGLGKTVE+LA I H R+ D +
Sbjct: 363 PFAGPQWPGGILADEMGLGKTVEVLALILTHTREDIKQDDL 403
Score = 100 (40.3 bits), Expect = 5.8e-117, Sum P(5) = 5.8e-117
Identities = 27/79 (34%), Positives = 36/79 (45%)
Query: 136 RVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTN 195
R ECICG + YK VQC C WQHA+CV Y K + + K ++
Sbjct: 658 RFECICGELGLV-DYKAR-VQCLKCHLWQHAECVNYKEENLKIKPFYCPHCLVAMKPVST 715
Query: 196 --IVVRDGEHIC-QWCDEL 211
++ IC QW DE+
Sbjct: 716 GATLIISPSSICHQWVDEI 734
Score = 95 (38.5 bits), Expect = 5.8e-117, Sum P(5) = 5.8e-117
Identities = 33/119 (27%), Positives = 53/119 (44%)
Query: 925 SELEVILGVIKNYCKT-QLGREAISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDE 983
SE E L I ++ K +L + S L + EA +KEY + A DE
Sbjct: 1294 SETERALKAILSFAKAHRLDVKLTEEGSIFLELFEAWKKEYKLLHEYWMVLRDHVSAIDE 1353
Query: 984 IRMATTRLHLKEDD----NDTSVDALSPDELASASVTNSSEKFISMTLLSQVKGKLRYL 1038
+ MAT RL ++ D N + + P E+ V ++K ++ + L + G+L YL
Sbjct: 1354 LAMATERLRVRHPDEPKPNPPVLHIIEPHEVEQNRVKLLNDKAVAKSQLQKKLGQLLYL 1412
Score = 46 (21.3 bits), Expect = 2.6e-14, Sum P(4) = 2.6e-14
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 371 LRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMC----RSSKVHVSDELQ 425
+R L+ S S WW++VI+ + + E + EI C +++K+ ++D+ +
Sbjct: 1127 IRELQRKIHSSSPWWLDVIQTAIQYA-IDE-ELVQRVQNEITCNYKQQTNKLSMADKFR 1183
Score = 44 (20.5 bits), Expect = 4.1e-14, Sum P(4) = 4.1e-14
Identities = 25/107 (23%), Positives = 43/107 (40%)
Query: 711 KLSVAQQEFRKSYMQVCNA-LDDREKQY--SAWWLEALHHAEGNKDFSAELIRKIEEAIS 767
K ++ +E S + C ++ +Q + L +H +G +AEL R E +
Sbjct: 996 KSTMTMEELLTSLQKKCRTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYR---EVLR 1052
Query: 768 GSLNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEID 814
S L+T S R S T+++ L + TL D L +
Sbjct: 1053 SSEEHKEKLKTDSLQRLHS--THNLMELLAKHTGIPPTLRDSQLSAE 1097
Score = 43 (20.2 bits), Expect = 4.0e-09, Sum P(3) = 4.0e-09
Identities = 22/85 (25%), Positives = 39/85 (45%)
Query: 916 ETVVVSKSPSELEVILGVIKNYCKTQLG---REAISASS--KQLHILEAMRKEYANARSL 970
E + + KS +E +L ++ C+T+ R+ + A + +HI++ EYA A L
Sbjct: 990 EFLPLQKSTMTMEELLTSLQKKCRTECEEAHRQLVCALNGLAGIHIIKG---EYALAAEL 1046
Query: 971 ATAQAQFLRAHDEIRMATT---RLH 992
+ H E ++ T RLH
Sbjct: 1047 YREVLRSSEEHKE-KLKTDSLQRLH 1070
Score = 41 (19.5 bits), Expect = 8.4e-111, Sum P(5) = 8.4e-111
Identities = 20/50 (40%), Positives = 25/50 (50%)
Query: 105 RKPASDDSIF-IDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGL 153
+K AS +IF +AV D Q+ N R LKR + I V E K GL
Sbjct: 458 KKGASIFAIFKYISAVYRYDIQR-NRRLLKRTLEKLIAEQVVEQVKGHGL 506
Score = 41 (19.5 bits), Expect = 5.6e-08, Sum P(4) = 5.6e-08
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 897 KNSTSSSVGNEEIKRRDVRETVVVSKSP 924
KN S NE + + VSKSP
Sbjct: 571 KNDRKSETDNENSMEENNIQKAAVSKSP 598
Score = 38 (18.4 bits), Expect = 4.1e-97, Sum P(4) = 4.1e-97
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 791 HIQSSLDQLEASRKTLLD 808
H SS+ Q EAS T+ D
Sbjct: 1652 HTSSSMKQSEASVLTVAD 1669
>UNIPROTKB|E1C615 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF00628 Pfam:PF13639
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 EMBL:AADN02025316
IPI:IPI00821492 Ensembl:ENSGALT00000037603 Uniprot:E1C615
Length = 1682
Score = 779 (279.3 bits), Expect = 5.8e-117, Sum P(5) = 5.8e-117
Identities = 181/454 (39%), Positives = 255/454 (56%)
Query: 207 WCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTS 266
+C + A PV+TGATLI+ P+ I QW EI RH R SL+ +Y+G +
Sbjct: 702 YCPHCLVAM-KPVSTGATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKHGFLQPH 760
Query: 267 IMDISELVGADIVLTTYDVLKEDLSHDSDRH---EGDRRFMRFQKRYPVIPTLLTRIFWW 323
+ L D+V+TTYDVL+ +L++ H E RRF R QKRY IP+ L + WW
Sbjct: 761 M-----LAEQDVVITTYDVLRTELNYVDIPHSNSEDGRRF-RNQKRYMAIPSPLVAVEWW 814
Query: 324 RICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISR 383
RICLDEAQMVE A A EMALRL +RWC++GTP+QR L+DLYGL+ FL P+ +
Sbjct: 815 RICLDEAQMVECTTAKAAEMALRLSGINRWCVSGTPVQRGLEDLYGLVLFLGIDPYWVKH 874
Query: 384 WWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEE 443
WW +++ PY + + + +IM RS+K V D++Q+PPQ E + WL FSP+E
Sbjct: 875 WWDQLLYRPYCRKNSQPL---YSLIAKIMWRSAKKDVIDQIQIPPQTENIHWLHFSPVER 931
Query: 444 HFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLR 503
HFY QHE C A ++++ D LK + +L +T +L LL+LR
Sbjct: 932 HFYHRQHEVCCQDALAKLRKISDWTLKLS--------SLDRRTVT-----SILYPLLRLR 978
Query: 504 QACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEK 563
QACCHPQ LQ+S ++M+E+L L K + E EEA R+LV ALNGLAGI +I+
Sbjct: 979 QACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCRTECEEAHRQLVCALNGLAGIHIIKG 1038
Query: 564 NLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEIL-------PMV--ANCATEL 614
+ A LY+E + EEH E + D L +H HNL E+L P + + + E
Sbjct: 1039 EYALAAELYREVLRSSEEHKEKLKTDSLQRLHSTHNLMELLAKHTGIPPTLRDSQLSAEA 1098
Query: 615 SQNEQHFPGCSE-KAFKIH-SIETCDENARKCQR 646
Q QH+ S + + H +++ + R+ QR
Sbjct: 1099 EQLRQHYMSKSNAEVAEAHQALQPVLQTIRELQR 1132
Score = 152 (58.6 bits), Expect = 5.8e-117, Sum P(5) = 5.8e-117
Identities = 51/229 (22%), Positives = 110/229 (48%)
Query: 698 ENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAE 757
E L+Q Y+S + +++ A Q + +Q L + S WWL+ + A E
Sbjct: 1099 EQLRQHYMSKSNAEVAEAHQALQP-VLQTIRELQRKIHSSSPWWLDVIQTAI-QYAIDEE 1156
Query: 758 LIRKIEEAISGSLNK-SRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQT 816
L+++++ I+ + + + L A ++R GL Y + + +D+++ +K + + + +
Sbjct: 1157 LVQRVQNEITCNYKQQTNKLSMADKFRDCRGLQYLLTTQMDEVKKFQKIVREAV----KN 1212
Query: 817 MEKPKEEDMDRMRHCRICY-GVGDGPI--CVHCELDESFQDYEARLFRLKKSQGDIASAE 873
+E P +++ + IC+ P+ CV C+ DE F +YE++LF +G +A E
Sbjct: 1213 LEGPPSKEV--IEAATICHLRPVRLPLNNCVFCKADELFTEYESKLFS-HTVKGQMAIFE 1269
Query: 874 EAVD-----LQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDVRET 917
E ++ + + + +R W S+ + + + + + R DV+ T
Sbjct: 1270 EMIEDEEGLVDDRLPTTSRGLWATSETER-ALKAILSFAKAHRLDVKLT 1317
Score = 139 (54.0 bits), Expect = 5.8e-117, Sum P(5) = 5.8e-117
Identities = 38/101 (37%), Positives = 48/101 (47%)
Query: 14 RPYQRRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYSTLFYNPFSGSLSLSP 73
RPYQ A WM+ RE L + LD ++YNPF+G +
Sbjct: 303 RPYQSEAVNWMLHRENFTNTPGGENALHF----LWREVITLDGVK-IYYNPFTGCVIREY 357
Query: 74 DYTSSYVFGGILADEMGLGKTVELLACIFAH-RKPASDDSI 113
+ GGILADEMGLGKTVE+LA I H R+ D +
Sbjct: 358 PFAGPQWPGGILADEMGLGKTVEVLALILTHTREDIKQDDL 398
Score = 100 (40.3 bits), Expect = 5.8e-117, Sum P(5) = 5.8e-117
Identities = 27/79 (34%), Positives = 36/79 (45%)
Query: 136 RVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTN 195
R ECICG + YK VQC C WQHA+CV Y K + + K ++
Sbjct: 658 RFECICGELGLV-DYKAR-VQCLKCHLWQHAECVNYKEENLKIKPFYCPHCLVAMKPVST 715
Query: 196 --IVVRDGEHIC-QWCDEL 211
++ IC QW DE+
Sbjct: 716 GATLIISPSSICHQWVDEI 734
Score = 95 (38.5 bits), Expect = 5.8e-117, Sum P(5) = 5.8e-117
Identities = 33/119 (27%), Positives = 53/119 (44%)
Query: 925 SELEVILGVIKNYCKT-QLGREAISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDE 983
SE E L I ++ K +L + S L + EA +KEY + A DE
Sbjct: 1294 SETERALKAILSFAKAHRLDVKLTEEGSIFLELFEAWKKEYKLLHEYWMVLRDHVSAIDE 1353
Query: 984 IRMATTRLHLKEDD----NDTSVDALSPDELASASVTNSSEKFISMTLLSQVKGKLRYL 1038
+ MAT RL ++ D N + + P E+ V ++K ++ + L + G+L YL
Sbjct: 1354 LAMATERLRVRHPDEPKPNPPVLHIIEPHEVEQNRVKLLNDKAVAKSQLQKKLGQLLYL 1412
Score = 46 (21.3 bits), Expect = 2.6e-14, Sum P(4) = 2.6e-14
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 371 LRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMC----RSSKVHVSDELQ 425
+R L+ S S WW++VI+ + + E + EI C +++K+ ++D+ +
Sbjct: 1127 IRELQRKIHSSSPWWLDVIQTAIQYA-IDE-ELVQRVQNEITCNYKQQTNKLSMADKFR 1183
Score = 44 (20.5 bits), Expect = 4.1e-14, Sum P(4) = 4.1e-14
Identities = 25/107 (23%), Positives = 43/107 (40%)
Query: 711 KLSVAQQEFRKSYMQVCNA-LDDREKQY--SAWWLEALHHAEGNKDFSAELIRKIEEAIS 767
K ++ +E S + C ++ +Q + L +H +G +AEL R E +
Sbjct: 996 KSTMTMEELLTSLQKKCRTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYR---EVLR 1052
Query: 768 GSLNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEID 814
S L+T S R S T+++ L + TL D L +
Sbjct: 1053 SSEEHKEKLKTDSLQRLHS--THNLMELLAKHTGIPPTLRDSQLSAE 1097
Score = 43 (20.2 bits), Expect = 4.0e-09, Sum P(3) = 4.0e-09
Identities = 22/85 (25%), Positives = 39/85 (45%)
Query: 916 ETVVVSKSPSELEVILGVIKNYCKTQLG---REAISASS--KQLHILEAMRKEYANARSL 970
E + + KS +E +L ++ C+T+ R+ + A + +HI++ EYA A L
Sbjct: 990 EFLPLQKSTMTMEELLTSLQKKCRTECEEAHRQLVCALNGLAGIHIIKG---EYALAAEL 1046
Query: 971 ATAQAQFLRAHDEIRMATT---RLH 992
+ H E ++ T RLH
Sbjct: 1047 YREVLRSSEEHKE-KLKTDSLQRLH 1070
Score = 41 (19.5 bits), Expect = 8.4e-111, Sum P(5) = 8.4e-111
Identities = 20/50 (40%), Positives = 25/50 (50%)
Query: 105 RKPASDDSIF-IDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGL 153
+K AS +IF +AV D Q+ N R LKR + I V E K GL
Sbjct: 453 KKGASIFAIFKYISAVYRYDIQR-NRRLLKRTLEKLIAEQVVEQVKGHGL 501
Score = 41 (19.5 bits), Expect = 5.6e-08, Sum P(4) = 5.6e-08
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 897 KNSTSSSVGNEEIKRRDVRETVVVSKSP 924
KN S NE + + VSKSP
Sbjct: 577 KNDRKSETDNENSMEENNIQKAAVSKSP 604
Score = 38 (18.4 bits), Expect = 4.1e-97, Sum P(4) = 4.1e-97
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 791 HIQSSLDQLEASRKTLLD 808
H SS+ Q EAS T+ D
Sbjct: 1652 HTSSSMKQSEASVLTVAD 1669
>MGI|MGI:1917581 [details] [associations]
symbol:Shprh "SNF2 histone linker PHD RING helicase"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00526 UniPathway:UPA00143 MGI:MGI:1917581
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 GO:GO:0000786
GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218
HOVERGEN:HBG059171 OrthoDB:EOG4G4GPJ EMBL:AY162264 EMBL:AY162265
EMBL:AY162266 EMBL:AK053448 EMBL:AK082160 EMBL:BC006883
EMBL:BC055003 IPI:IPI00380430 IPI:IPI00469003 IPI:IPI00623316
IPI:IPI00845816 RefSeq:NP_001071175.1 RefSeq:NP_766525.3
UniGene:Mm.133101 ProteinModelPortal:Q7TPQ3 SMR:Q7TPQ3
STRING:Q7TPQ3 PhosphoSite:Q7TPQ3 PaxDb:Q7TPQ3 PRIDE:Q7TPQ3
Ensembl:ENSMUST00000044053 Ensembl:ENSMUST00000054814
Ensembl:ENSMUST00000159541 Ensembl:ENSMUST00000159810 GeneID:268281
KEGG:mmu:268281 UCSC:uc007ejp.1 UCSC:uc007ejq.1 InParanoid:Q7TPQ3
OMA:FEGLVKQ ChiTaRS:SHPRH NextBio:392208 Bgee:Q7TPQ3
CleanEx:MM_SHPRH Genevestigator:Q7TPQ3 Uniprot:Q7TPQ3
Length = 1674
Score = 753 (270.1 bits), Expect = 2.6e-115, Sum P(5) = 2.6e-115
Identities = 167/400 (41%), Positives = 228/400 (57%)
Query: 207 WCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTS 266
+C + A + PV+T ATLI+ P+ I QW EI RH R SL+ +Y+G +
Sbjct: 693 YCPHCLVAME-PVSTRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKHGFLQPH 751
Query: 267 IMDISELVGADIVLTTYDVLKEDLSHDSDRHEG--DRRFMRFQKRYPVIPTLLTRIFWWR 324
L DIV+ TYDVL+ +L++ + H D R +R QKRY IP+ L + WWR
Sbjct: 752 F-----LAEQDIVIITYDVLRSELNYVNIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWR 806
Query: 325 ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRW 384
ICLDEAQMVE A EMA RL +RWCI+GTP+QR L+DL+GL+ FL P+ + W
Sbjct: 807 ICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHW 866
Query: 385 WIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEH 444
WI ++ PY + + + F +IM RS+K V D++Q+PPQ E + WL FSP+E H
Sbjct: 867 WIRLLYHPYCKKNP---QHLYSFIAKIMWRSAKKDVIDQIQIPPQTEEMHWLHFSPVERH 923
Query: 445 FYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQ 504
FY QHE C A ++++ D LK SS + + +L LL+LRQ
Sbjct: 924 FYHRQHEVCCQDAIVKLRKISDWALK------LSS-------LDRRTVSSILYPLLRLRQ 970
Query: 505 ACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKN 564
ACCHPQ LQ+S ++M+E+L L K E EEA R+LV ALNGLAGI +I+
Sbjct: 971 ACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCALNGLAGIHIIKGE 1030
Query: 565 LSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEIL 604
+ A LY+E + EEH + D L +H HNL E+L
Sbjct: 1031 YALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELL 1070
Score = 160 (61.4 bits), Expect = 2.6e-115, Sum P(5) = 2.6e-115
Identities = 39/101 (38%), Positives = 53/101 (52%)
Query: 14 RPYQRRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYSTLFYNPFSGSLSLSP 73
RPYQR A WM+Q+E+ + P D L L+YNP++G +
Sbjct: 300 RPYQREAVNWMLQQEQFRSAPPADNSLHFLWREIVTP-DGLK----LYYNPYTGCIIRDF 354
Query: 74 DYTSSYVFGGILADEMGLGKTVELLACIFAH-RKPASDDSI 113
+ + GGILADEMGLGKTVE+LA I H R+ D++
Sbjct: 355 PHAGPQLLGGILADEMGLGKTVEVLALILTHTRQDVKQDAL 395
Score = 158 (60.7 bits), Expect = 2.6e-115, Sum P(5) = 2.6e-115
Identities = 45/186 (24%), Positives = 91/186 (48%)
Query: 698 ENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSA- 756
+ L++ Y+S + +++ AQQ + Q L + S WWL +H A +FS
Sbjct: 1091 KQLREHYMSKCNTEVAEAQQALQP-VQQSIRELQRKIHSNSPWWLNVIHRA---MEFSVD 1146
Query: 757 -ELIRKIEEAISGSLNKSR-ALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEID 814
EL++++ IS + + L + ++R GL + + + +++L +K + + +
Sbjct: 1147 EELVQRVRNEISSNYKQQTDKLSMSEKFRDCRGLQFLLTTQMEELHKFQKLVREAV---- 1202
Query: 815 QTMEKPKEEDMDRMRHCRICY-GVGDGPI--CVHCELDESFQDYEARLFRLKKSQGDIAS 871
+ +EKP ++ + +C+ P+ CV C+ DE F +YE++LF +G A
Sbjct: 1203 KKLEKPPSREV--IESATVCHLRPARLPLNCCVFCKADELFTEYESKLF-FNTVKGQTAI 1259
Query: 872 AEEAVD 877
EE ++
Sbjct: 1260 FEEMIE 1265
Score = 91 (37.1 bits), Expect = 2.6e-115, Sum P(5) = 2.6e-115
Identities = 25/80 (31%), Positives = 36/80 (45%)
Query: 136 RVECICGAVSE-SRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMT 194
R ECICG + K + VQC C WQHA CV Y + K + + + ++
Sbjct: 649 RFECICGEFDQIGHKPR---VQCLKCHLWQHAKCVNYEEKNLKVKPFYCPHCLVAMEPVS 705
Query: 195 N--IVVRDGEHIC-QWCDEL 211
++ IC QW DE+
Sbjct: 706 TRATLIISPSSICHQWVDEI 725
Score = 88 (36.0 bits), Expect = 2.6e-115, Sum P(5) = 2.6e-115
Identities = 31/123 (25%), Positives = 56/123 (45%)
Query: 920 VSKSPSELEVILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYANARSLATAQAQFLR 979
VS++ ++ IL +++ + E + S + + EA +KEY +
Sbjct: 1285 VSETERSMKAILSFARSH---RFDVEYVDEGSVSMDLFEAWKKEYKLLHEYWMTLRNRVS 1341
Query: 980 AHDEIRMATTRL---HLKEDDNDTSVD-ALSPDELASASVTNSSEKFISMTLLSQVKGKL 1035
A DE+ MAT RL H KE + V + P E+ + ++K ++ + L + G+L
Sbjct: 1342 AVDELAMATERLRVRHPKEPKPNPPVHHIIEPHEVEQNRIKLVNDKAVATSQLQKKLGQL 1401
Query: 1036 RYL 1038
YL
Sbjct: 1402 LYL 1404
Score = 48 (22.0 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 19/85 (22%), Positives = 37/85 (43%)
Query: 574 EAMAVVEEHSEDFRLDPLLNIHLHHNLTEIL--PMVANCATELSQNEQHFPGCSEKAFKI 631
E ++V+E E+ RL LN+ + + + + A +L E SE+ F +
Sbjct: 73 ETVSVLEATEEETRLSVTLNVTVSPYRVDNSWKAFLGDFALQLLPKESLVEHFSERTFTL 132
Query: 632 HSIETCDENA----RKCQRVSREEN 652
E+ + +C+ V ++EN
Sbjct: 133 SPSESSSQFLIYVHSECKNVEKQEN 157
Score = 46 (21.3 bits), Expect = 6.5e-15, Sum P(4) = 6.5e-15
Identities = 24/91 (26%), Positives = 41/91 (45%)
Query: 361 QRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHV 420
Q+ L + +R L+ S S WW+ VI E V E + EI S+
Sbjct: 1109 QQALQPVQQSIRELQRKIHSNSPWWLNVIHRAMEFS-VDE-ELVQRVRNEIS--SNYKQQ 1164
Query: 421 SDELQLPPQ-EEC--VSWLTFSPIEE-HFYQ 447
+D+L + + +C + +L + +EE H +Q
Sbjct: 1165 TDKLSMSEKFRDCRGLQFLLTTQMEELHKFQ 1195
Score = 43 (20.2 bits), Expect = 1.3e-14, Sum P(4) = 1.3e-14
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 441 IEEHFYQSQHETCVGYAREVIQRLKDNI--LKRNVPGHASSDALYNPI 486
+ EH Y S+ T V A++ +Q ++ +I L+R + H++S N I
Sbjct: 1093 LREH-YMSKCNTEVAEAQQALQPVQQSIRELQRKI--HSNSPWWLNVI 1137
Score = 37 (18.1 bits), Expect = 5.2e-14, Sum P(4) = 5.2e-14
Identities = 4/8 (50%), Positives = 6/8 (75%)
Query: 740 WWLEALHH 747
WW+ L+H
Sbjct: 866 WWIRLLYH 873
Score = 37 (18.1 bits), Expect = 5.2e-14, Sum P(4) = 5.2e-14
Identities = 18/76 (23%), Positives = 34/76 (44%)
Query: 711 KLSVAQQEFRKSYMQVCNA-LDDREKQY--SAWWLEALHHAEGNKDFSAELIRKIEEAIS 767
K ++ +E S + C ++ +Q + L +H +G +AEL R++ S
Sbjct: 987 KSTMTMEELLTSLQKKCGTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYREVLR--S 1044
Query: 768 GSLNKSRALRTASRYR 783
+K + L+T S R
Sbjct: 1045 SEEHKGK-LKTDSLQR 1059
>UNIPROTKB|E2R8G0 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006334 "nucleosome assembly" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218
OMA:FEGLVKQ EMBL:AAEX03000243 EMBL:AAEX03000244 RefSeq:XP_533438.2
Ensembl:ENSCAFT00000000517 GeneID:476233 KEGG:cfa:476233
Uniprot:E2R8G0
Length = 1685
Score = 753 (270.1 bits), Expect = 4.0e-114, Sum P(5) = 4.0e-114
Identities = 166/400 (41%), Positives = 229/400 (57%)
Query: 207 WCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTS 266
+C + A + PV+T ATLI+ P+ I QW EI RH R SL+ +Y+G +
Sbjct: 704 YCPHCLVAME-PVSTRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPH 762
Query: 267 IMDISELVGADIVLTTYDVLKEDLSHDSDRHEG--DRRFMRFQKRYPVIPTLLTRIFWWR 324
L DIV+ TYDVL+ +L++ H D R +R QKRY IP+ L + WWR
Sbjct: 763 F-----LAEQDIVIITYDVLRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWR 817
Query: 325 ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRW 384
ICLDEAQMVE A A EMA RL +RWCI+GTP+QR L+DL+GL+ FL P+ + W
Sbjct: 818 ICLDEAQMVECPAVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHW 877
Query: 385 WIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEH 444
W+ ++ PY + + + F +I+ RS+K V D++Q+PPQ E + WL FSP+E H
Sbjct: 878 WVRLLYRPYCKKNP---QHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERH 934
Query: 445 FYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQ 504
FY QHE C A ++++ D LK + +L +T +L LL+LRQ
Sbjct: 935 FYHRQHEVCCQDAVVKLRKISDWALKLS--------SLDRRTVT-----SILYPLLRLRQ 981
Query: 505 ACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKN 564
ACCHPQ LQ+S ++M+E+L L K E EEA R+LV ALNGLAGI +I+
Sbjct: 982 ACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCALNGLAGIHIIKGE 1041
Query: 565 LSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEIL 604
+ A LY+E + EEH + D L +H HNL E+L
Sbjct: 1042 YALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELL 1081
Score = 160 (61.4 bits), Expect = 4.0e-114, Sum P(5) = 4.0e-114
Identities = 38/101 (37%), Positives = 50/101 (49%)
Query: 14 RPYQRRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYSTLFYNPFSGSLSLSP 73
RPYQR A WM+Q+E + P D L+YNP++G +
Sbjct: 307 RPYQREAVNWMLQQEHFRSAPTNENALHFLWREIVTPEDL-----KLYYNPYTGCIIRDY 361
Query: 74 DYTSSYVFGGILADEMGLGKTVELLACIFAH-RKPASDDSI 113
+ GGILADEMGLGKTVE+LA I H R+ D++
Sbjct: 362 PNAGPQLLGGILADEMGLGKTVEVLALILTHTRQDVKQDAL 402
Score = 133 (51.9 bits), Expect = 4.0e-114, Sum P(5) = 4.0e-114
Identities = 44/210 (20%), Positives = 96/210 (45%)
Query: 698 ENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAE 757
+ L++ Y+S + +++ AQQ + Q L + S WWL +H A E
Sbjct: 1102 KQLREHYMSKCNTEVAEAQQALQP-VQQTIKELQRKIYSNSPWWLNVIHRAI-EFAIDEE 1159
Query: 758 LIRKIEEAISGSLNKSRA-LRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQT 816
L +++ I+ + + L + ++ GL + + + +++L +K + + + +
Sbjct: 1160 LAQRVRNEITSNYKQQIGKLSMSEKFHDCRGLQFLLTTQMEELNKFQKLVREAV----KN 1215
Query: 817 MEKPKEEDMDRMRHCRICYGVGDG-PI--CVHCELDESFQDYEARLFRLKKSQGDIASAE 873
+E P ++ + IC+ P+ CV C+ DE F +YE++LF +G A E
Sbjct: 1216 LEGPPSRNV--IESATICHLRPTRLPLNCCVFCKADELFTEYESKLFS-HTVKGQTAIFE 1272
Query: 874 EAVD-----LQKKNSSLNRFYWYLSQPNKN 898
E ++ + + + +R W +S+ ++
Sbjct: 1273 EMIEDEEGLVDDRIPTTSRGLWAISETERS 1302
Score = 98 (39.6 bits), Expect = 4.0e-114, Sum P(5) = 4.0e-114
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 136 RVECICGAVSE-SRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMT 194
R ECICG + + RK + VQC C WQHA CV Y + K + + + ++
Sbjct: 660 RFECICGELDQVDRKPR---VQCLKCHLWQHAKCVNYEEKNLKIKPFYCPHCLVAMEPVS 716
Query: 195 N--IVVRDGEHIC-QWCDEL 211
++ IC QW DE+
Sbjct: 717 TRATLIISPSSICHQWVDEI 736
Score = 95 (38.5 bits), Expect = 4.0e-114, Sum P(5) = 4.0e-114
Identities = 33/119 (27%), Positives = 55/119 (46%)
Query: 925 SELEVILGVIKNYCKT-QLGREAISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDE 983
SE E L + ++ K+ + E I S + + EA +KEY A + A DE
Sbjct: 1297 SETERSLKALLSFAKSHRFDVEFIDEGSTSMDLFEAWKKEYKLLHEYWMALRNRVSAIDE 1356
Query: 984 IRMATTRL---HLKEDD-NDTSVDALSPDELASASVTNSSEKFISMTLLSQVKGKLRYL 1038
+ MAT RL H +E N + + P E+ + ++K ++ + L + G+L YL
Sbjct: 1357 LAMATERLRVRHPREPKPNPPVLHIIEPHEVEQNRIKLLNDKAVATSQLQKKLGQLLYL 1415
Score = 71 (30.1 bits), Expect = 1.2e-107, Sum P(5) = 1.2e-107
Identities = 45/183 (24%), Positives = 75/183 (40%)
Query: 711 KLSVAQQEFRKSYMQVCNALDDREKQYSAWWL-----EALHHAEGNKDFSAELI-RKIEE 764
+L ++ R+ YM CN + E Q + + E N + +I R IE
Sbjct: 1096 RLEEEAKQLREHYMSKCNT-EVAEAQQALQPVQQTIKELQRKIYSNSPWWLNVIHRAIEF 1154
Query: 765 AISGSLNKSRALRTASRYRS-ISGLT----YHIQSSLDQLEASRKTLLDRLLEIDQTMEK 819
AI L + S Y+ I L+ +H L L ++ L++ ++ + K
Sbjct: 1155 AIDEELAQRVRNEITSNYKQQIGKLSMSEKFHDCRGLQFLLTTQMEELNKFQKLVREAVK 1214
Query: 820 PKEEDMDR--MRHCRICYGVGDG-PI--CVHCELDESFQDYEARLFRLKKSQGDIASAEE 874
E R + IC+ P+ CV C+ DE F +YE++LF +G A EE
Sbjct: 1215 NLEGPPSRNVIESATICHLRPTRLPLNCCVFCKADELFTEYESKLFS-HTVKGQTAIFEE 1273
Query: 875 AVD 877
++
Sbjct: 1274 MIE 1276
Score = 46 (21.3 bits), Expect = 2.6e-16, Sum P(4) = 2.6e-16
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 361 QRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYE 394
Q+ L + ++ L+ +S S WW+ VI E
Sbjct: 1120 QQALQPVQQTIKELQRKIYSNSPWWLNVIHRAIE 1153
Score = 44 (20.5 bits), Expect = 1.2e-19, Sum P(4) = 1.2e-19
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 642 RKCQRVSREENSDFTDAEDPSGHLSD 667
RK Q+ SR+ S TD+E + SD
Sbjct: 534 RKIQKESRKSGSKDTDSEYLPSNTSD 559
Score = 38 (18.4 bits), Expect = 2.8e-96, Sum P(4) = 2.8e-96
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 938 CKTQLGREAISASSKQLHILEAMRKEYANA 967
C T++ + Q I E RK Y+N+
Sbjct: 1112 CNTEVAEAQQALQPVQQTIKELQRKIYSNS 1141
Score = 37 (18.1 bits), Expect = 2.1e-15, Sum P(4) = 2.1e-15
Identities = 18/76 (23%), Positives = 34/76 (44%)
Query: 711 KLSVAQQEFRKSYMQVCNA-LDDREKQY--SAWWLEALHHAEGNKDFSAELIRKIEEAIS 767
K ++ +E S + C ++ +Q + L +H +G +AEL R++ S
Sbjct: 998 KSTMTMEELLTSLQKKCGTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYREVLR--S 1055
Query: 768 GSLNKSRALRTASRYR 783
+K + L+T S R
Sbjct: 1056 SEEHKGK-LKTDSLQR 1070
>UNIPROTKB|Q149N8 [details] [associations]
symbol:SHPRH "E3 ubiquitin-protein ligase SHPRH"
species:9606 "Homo sapiens" [GO:0000786 "nucleosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF13639 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 UniPathway:UPA00143
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 GO:GO:0000786 EMBL:AL356599 KO:K15710
EMBL:AY161136 EMBL:AY163808 EMBL:CR749290 EMBL:AL451145
EMBL:BC113089 EMBL:BC117685 EMBL:BC117686 EMBL:AK075318
EMBL:AK094944 EMBL:AB095943 IPI:IPI00470931 IPI:IPI00746978
IPI:IPI00845433 IPI:IPI00845497 RefSeq:NP_001036148.2
RefSeq:NP_775105.1 UniGene:Hs.723297 ProteinModelPortal:Q149N8
SMR:Q149N8 DIP:DIP-46277N IntAct:Q149N8 MINT:MINT-1370426
STRING:Q149N8 PhosphoSite:Q149N8 DMDM:146325723 PaxDb:Q149N8
PRIDE:Q149N8 Ensembl:ENST00000275233 Ensembl:ENST00000367505
Ensembl:ENST00000438092 Ensembl:ENST00000519632 GeneID:257218
KEGG:hsa:257218 UCSC:uc003qle.3 UCSC:uc003qlf.3 UCSC:uc003qlj.1
CTD:257218 GeneCards:GC06M146185 HGNC:HGNC:19336 HPA:HPA034854
MIM:608048 neXtProt:NX_Q149N8 PharmGKB:PA134880315
HOVERGEN:HBG059171 OrthoDB:EOG4G4GPJ GenomeRNAi:257218
NextBio:92973 ArrayExpress:Q149N8 Bgee:Q149N8 Genevestigator:Q149N8
Uniprot:Q149N8
Length = 1683
Score = 749 (268.7 bits), Expect = 8.5e-114, Sum P(5) = 8.5e-114
Identities = 165/400 (41%), Positives = 227/400 (56%)
Query: 207 WCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTS 266
+C + A + PV+T ATLI+ P+ I QW EI RH R SL+ +Y+G +
Sbjct: 702 YCPHCLVAME-PVSTRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPH 760
Query: 267 IMDISELVGADIVLTTYDVLKEDLSHDSDRHEG--DRRFMRFQKRYPVIPTLLTRIFWWR 324
L DIV+ TYDVL+ +L++ H D R +R QKRY IP+ L + WWR
Sbjct: 761 F-----LAEQDIVIITYDVLRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWR 815
Query: 325 ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRW 384
ICLDEAQMVE A EMA RL +RWCI+GTP+QR L+DL+GL+ FL P+ + W
Sbjct: 816 ICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHW 875
Query: 385 WIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEH 444
W+ ++ PY + + + F +I+ RS+K V D++Q+PPQ E + WL FSP+E H
Sbjct: 876 WVRLLYRPYCKKNP---QHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERH 932
Query: 445 FYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQ 504
FY QHE C ++V+ +L R + S AL + +L LL+LRQ
Sbjct: 933 FYHRQHEVC---CQDVVVKL------RKI----SDWALKLSSLDRRTVTSILYPLLRLRQ 979
Query: 505 ACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKN 564
ACCHPQ LQ+S ++M+E+L L K E EEA R+LV ALNGLAGI +I+
Sbjct: 980 ACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCALNGLAGIHIIKGE 1039
Query: 565 LSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEIL 604
+ A LY+E + EEH + D L +H HNL E+L
Sbjct: 1040 YALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELL 1079
Score = 148 (57.2 bits), Expect = 8.5e-114, Sum P(5) = 8.5e-114
Identities = 46/211 (21%), Positives = 99/211 (46%)
Query: 698 ENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHA-EGNKDFSA 756
+ L++ Y+S + +++ AQQ Q + L + S WWL +H A E D
Sbjct: 1100 KQLREHYMSKCNTEVAEAQQALYP-VQQTIHELQRKIHSNSPWWLNVIHRAIEFTID--E 1156
Query: 757 ELIRKIEEAISGSLNKSRA-LRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQ 815
EL++++ I+ + + L + ++R GL + + + +++L +K + + + +
Sbjct: 1157 ELVQRVRNEITSNYKQQTGKLSMSEKFRDCRGLQFLLTTQMEELNKCQKLVREAV----K 1212
Query: 816 TMEKPKEEDMDRMRHCRICY-GVGDGPI--CVHCELDESFQDYEARLFRLKKSQGDIASA 872
+E P ++ + +C+ P+ CV C+ DE F +YE++LF +G A
Sbjct: 1213 NLEGPPSRNV--IESATVCHLRPARLPLNCCVFCKADELFTEYESKLFS-NTVKGQTAIF 1269
Query: 873 EEAVD-----LQKKNSSLNRFYWYLSQPNKN 898
EE ++ + + + R W +S+ ++
Sbjct: 1270 EEMIEDEEGLVDDRAPTTTRGLWAISETERS 1300
Score = 147 (56.8 bits), Expect = 8.5e-114, Sum P(5) = 8.5e-114
Identities = 37/101 (36%), Positives = 52/101 (51%)
Query: 14 RPYQRRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYSTLFYNPFSGSLSLSP 73
RPYQR A WM+Q+E + + + L L+YNP++G +
Sbjct: 305 RPYQREAVNWMLQQECFRSSPATESALHFLWREI-VTSEGLK----LYYNPYTGCIIREY 359
Query: 74 DYTSSYVFGGILADEMGLGKTVELLACIFAH-RKPASDDSI 113
+ + GGILADEMGLGKTVE+LA I H R+ D++
Sbjct: 360 PNSGPQLLGGILADEMGLGKTVEVLALILTHTRQDVKQDAL 400
Score = 98 (39.6 bits), Expect = 8.5e-114, Sum P(5) = 8.5e-114
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 136 RVECICGAVSE-SRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMT 194
R ECICG + + RK + VQC C WQHA CV Y + K + + + ++
Sbjct: 658 RFECICGELDQIDRKPR---VQCLKCHLWQHAKCVNYDEKNLKIKPFYCPHCLVAMEPVS 714
Query: 195 N--IVVRDGEHIC-QWCDEL 211
++ IC QW DE+
Sbjct: 715 TRATLIISPSSICHQWVDEI 734
Score = 94 (38.1 bits), Expect = 8.5e-114, Sum P(5) = 8.5e-114
Identities = 30/119 (25%), Positives = 55/119 (46%)
Query: 925 SELEVILGVIKNYCKT-QLGREAISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDE 983
SE E + I ++ K+ + E + S + + EA +KEY A + A DE
Sbjct: 1295 SETERSMKAILSFAKSHRFDVEFVDEGSTSMDLFEAWKKEYKLLHEYWMALRNRVSAVDE 1354
Query: 984 IRMATTRLHLKED----DNDTSVDALSPDELASASVTNSSEKFISMTLLSQVKGKLRYL 1038
+ MAT RL +++ N + + P E+ + ++K ++ + L + G+L YL
Sbjct: 1355 LAMATERLRVRDPREPKPNPPVLHIIEPHEVEQNRIKLLNDKAVATSQLQKKLGQLLYL 1413
Score = 74 (31.1 bits), Expect = 4.5e-106, Sum P(5) = 4.5e-106
Identities = 42/185 (22%), Positives = 77/185 (41%)
Query: 711 KLSVAQQEFRKSYMQVCNALDDREKQYSAWWLE-ALHHAE----GNKDFSAELI-RKIEE 764
+L ++ R+ YM CN + E Q + + ++ +H + N + +I R IE
Sbjct: 1094 RLEEEAKQLREHYMSKCNT-EVAEAQQALYPVQQTIHELQRKIHSNSPWWLNVIHRAIEF 1152
Query: 765 AISGSLNKSRALRTASRYRSISGLTYHIQSSLD--QLEASRKTLLDRL-------LEIDQ 815
I L + S Y+ +G + D L+ T ++ L E +
Sbjct: 1153 TIDEELVQRVRNEITSNYKQQTGKLSMSEKFRDCRGLQFLLTTQMEELNKCQKLVREAVK 1212
Query: 816 TMEKPKEEDMDRMRHCRICY-GVGDGPI--CVHCELDESFQDYEARLFRLKKSQGDIASA 872
+E P ++ + +C+ P+ CV C+ DE F +YE++LF +G A
Sbjct: 1213 NLEGPPSRNV--IESATVCHLRPARLPLNCCVFCKADELFTEYESKLFS-NTVKGQTAIF 1269
Query: 873 EEAVD 877
EE ++
Sbjct: 1270 EEMIE 1274
Score = 38 (18.4 bits), Expect = 2.6e-102, Sum P(5) = 2.6e-102
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 613 ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSRE 650
+LS +E+ F C F + T E KCQ++ RE
Sbjct: 1176 KLSMSEK-FRDCRGLQFLL---TTQMEELNKCQKLVRE 1209
Score = 37 (18.1 bits), Expect = 6.0e-14, Sum P(4) = 6.0e-14
Identities = 18/76 (23%), Positives = 34/76 (44%)
Query: 711 KLSVAQQEFRKSYMQVCNA-LDDREKQY--SAWWLEALHHAEGNKDFSAELIRKIEEAIS 767
K ++ +E S + C ++ +Q + L +H +G +AEL R++ S
Sbjct: 996 KSTMTMEELLTSLQKKCGTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYREVLR--S 1053
Query: 768 GSLNKSRALRTASRYR 783
+K + L+T S R
Sbjct: 1054 SEEHKGK-LKTDSLQR 1068
Score = 37 (18.1 bits), Expect = 2.1e-13, Sum P(5) = 2.1e-13
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 361 QRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYE 394
Q+ L + + L+ S S WW+ VI E
Sbjct: 1118 QQALYPVQQTIHELQRKIHSNSPWWLNVIHRAIE 1151
>UNIPROTKB|E1BLB1 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:DAAA02026947 IPI:IPI00711948 Ensembl:ENSBTAT00000010673
Uniprot:E1BLB1
Length = 1688
Score = 764 (274.0 bits), Expect = 5.7e-112, Sum P(5) = 5.7e-112
Identities = 169/400 (42%), Positives = 229/400 (57%)
Query: 207 WCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTS 266
+C + A + PV+T ATLI+ P+ I QW EI RH R SL+ +Y+G +
Sbjct: 707 YCPHCLVAME-PVSTRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPH 765
Query: 267 IMDISELVGADIVLTTYDVLKEDLSHDSDRHEG--DRRFMRFQKRYPVIPTLLTRIFWWR 324
L DIV+ TYDVL+ +L++ H D R +R QKRY IP+ L + WWR
Sbjct: 766 F-----LAEQDIVIITYDVLRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWR 820
Query: 325 ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRW 384
ICLDEAQMVE A A EMA RL +RWCI+GTP+QR L+DL+GL+ FL P+ + W
Sbjct: 821 ICLDEAQMVECPAVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGVEPYCVRHW 880
Query: 385 WIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEH 444
W+ ++ PY + F + F +IM RS+K V D++Q+PPQ E WL FSP+E H
Sbjct: 881 WVRLLYRPYCKKNP---HFLYSFIAKIMWRSAKKDVIDQIQIPPQTEETHWLHFSPVERH 937
Query: 445 FYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQ 504
FY QHE C A ++++ D LK + +L +T +L LL+LRQ
Sbjct: 938 FYHRQHEVCCQDAVVKLRKISDWALKLS--------SLDRRTVT-----SILYPLLRLRQ 984
Query: 505 ACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKN 564
ACCHPQ LQ+S ++M+E+L L K E EEA R+LV ALNGLAGI +I+
Sbjct: 985 ACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCALNGLAGIHIIKGE 1044
Query: 565 LSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEIL 604
+ A LY+E + EEH E + D L +H HNL E+L
Sbjct: 1045 YALAAELYREVLRSSEEHKEKLKTDSLQRLHATHNLMELL 1084
Score = 148 (57.2 bits), Expect = 5.7e-112, Sum P(5) = 5.7e-112
Identities = 37/101 (36%), Positives = 51/101 (50%)
Query: 14 RPYQRRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYSTLFYNPFSGSLSLSP 73
RPYQR A WM+Q+E + + + L L+YNP++G +
Sbjct: 310 RPYQREAVNWMLQQEHFKSTPASENALHFLWREI-VTSEGLK----LYYNPYTGCIIREY 364
Query: 74 DYTSSYVFGGILADEMGLGKTVELLACIFAH-RKPASDDSI 113
+ GGILADEMGLGKTVE+LA I H R+ D++
Sbjct: 365 PNAGPQLLGGILADEMGLGKTVEVLALILTHTRQDVKQDAL 405
Score = 129 (50.5 bits), Expect = 5.7e-112, Sum P(5) = 5.7e-112
Identities = 45/210 (21%), Positives = 94/210 (44%)
Query: 698 ENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAE 757
+ L++ Y+S + +++ AQQ Q L + S WWL + A E
Sbjct: 1105 KQLREHYMSKCNTEVAEAQQALLP-VQQTIRDLQRKIHSNSPWWLNVIQRAI-EFGIEEE 1162
Query: 758 LIRKIEEAISGSLNKSRA-LRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQT 816
L +++ I+ + + L + ++ GL + + + +++L +K ++ E +
Sbjct: 1163 LAQRVRNEITSNYKQQTGKLSMSEKFHDCRGLQFLLTTHMEELSKFQK----QVREAVKN 1218
Query: 817 MEKPKEEDMDRMRHCRICY-GVGDGPI--CVHCELDESFQDYEARLFRLKKSQGDIASAE 873
+E P + + IC+ P+ CV C+ DE F +YE++LF +G A E
Sbjct: 1219 LEGPPSRHV--IESATICHLRPVRLPLNCCVFCKADELFTEYESKLFS-HTVKGQTAIFE 1275
Query: 874 EAVD-----LQKKNSSLNRFYWYLSQPNKN 898
E ++ + + ++ NR W +S+ ++
Sbjct: 1276 EMIEDEEGLVDDRITTTNRGLWAISETERS 1305
Score = 94 (38.1 bits), Expect = 5.7e-112, Sum P(5) = 5.7e-112
Identities = 30/119 (25%), Positives = 55/119 (46%)
Query: 925 SELEVILGVIKNYCKT-QLGREAISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDE 983
SE E + + ++ K+ + E I S + + EA +KEY A + A DE
Sbjct: 1300 SETERSMKALLSFAKSHRFDVEFIDEGSNSMDLFEAWKKEYKLLHEYWMALRNRVSAVDE 1359
Query: 984 IRMATTRLHLKED----DNDTSVDALSPDELASASVTNSSEKFISMTLLSQVKGKLRYL 1038
+ MAT RL +++ N + + P E+ + ++K ++ + L + G+L YL
Sbjct: 1360 LAMATERLRVRDPREPKPNPPVLHIIEPHEVEQNRIKLLNDKAVATSQLQKKLGQLLYL 1418
Score = 83 (34.3 bits), Expect = 5.7e-112, Sum P(5) = 5.7e-112
Identities = 24/80 (30%), Positives = 36/80 (45%)
Query: 136 RVECICGAVSE-SRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMT 194
R CICG + + K + VQC C WQHA CV Y + K + + + ++
Sbjct: 663 RFGCICGELDQVDCKPR---VQCLKCHLWQHAKCVNYEEKNLKIKPFYCPHCLVAMEPVS 719
Query: 195 N--IVVRDGEHIC-QWCDEL 211
++ IC QW DE+
Sbjct: 720 TRATLIISPSSICHQWVDEI 739
Score = 45 (20.9 bits), Expect = 2.4e-13, Sum P(4) = 2.4e-13
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 361 QRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENG 396
Q+ L + +R L+ S S WW+ VI+ E G
Sbjct: 1123 QQALLPVQQTIRDLQRKIHSNSPWWLNVIQRAIEFG 1158
Score = 41 (19.5 bits), Expect = 1.5e-17, Sum P(4) = 1.5e-17
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 642 RKCQRVSREENSDFTDAEDPSGHLSD 667
RK Q+ SR+ + TD+E + SD
Sbjct: 537 RKTQKESRKSGNKDTDSEYLPSNTSD 562
Score = 39 (18.8 bits), Expect = 9.5e-13, Sum P(4) = 9.5e-13
Identities = 18/76 (23%), Positives = 31/76 (40%)
Query: 711 KLSVAQQEFRKSYMQVCNA-LDDREKQY--SAWWLEALHHAEGNKDFSAELIRKIEEAIS 767
K ++ +E S + C ++ +Q + L +H +G +AEL R E +
Sbjct: 1001 KSTMTMEELLTSLQKKCGTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYR---EVLR 1057
Query: 768 GSLNKSRALRTASRYR 783
S L+T S R
Sbjct: 1058 SSEEHKEKLKTDSLQR 1073
Score = 37 (18.1 bits), Expect = 1.0e-07, Sum P(4) = 1.0e-07
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 559 ALIEKNLSQA-VSLYKEAMAVVEEHSEDFRLDPLLNIHL 596
AL + N+ A +S K +E+ F+ DP +NI L
Sbjct: 1552 ALTDNNMEFAQISRVK----TFQENLSAFKYDPQINILL 1586
>UNIPROTKB|F1S736 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:CU234205 EMBL:CU019540 Ensembl:ENSSSCT00000004555
Uniprot:F1S736
Length = 1688
Score = 769 (275.8 bits), Expect = 1.7e-106, Sum P(4) = 1.7e-106
Identities = 191/509 (37%), Positives = 268/509 (52%)
Query: 107 PASDDSIFID-TAVQVTDDQKVNLRRLKRERVECICGA--------VSESRKYKGLWVQC 157
PA DS D T + T +V + +++VE + A V G +C
Sbjct: 607 PAPGDSGITDVTTSESTCVFEVKQEQAAKDQVESVTPAGGDIPHSNVMSPNNSSGYRFEC 666
Query: 158 DICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDS 217
IC ADC PR + + +L +H + + ++ C C +E
Sbjct: 667 -ICGELDQADC---KPRVQCLKC--QLWQHAKCVNYEEKNLKIKPFYCPHCLVAME---- 716
Query: 218 PVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGAD 277
PV+T ATLI+ P+ I QW EI RH R SL+ +Y+G + L D
Sbjct: 717 PVSTRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHF-----LAEQD 771
Query: 278 IVLTTYDVLKEDLSHDSDRHEG--DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 335
IV+ TYDVL+ +L++ H D R +R QKRY IP+ L + WWRICLDEAQMVE
Sbjct: 772 IVIITYDVLRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVEC 831
Query: 336 NAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYEN 395
A A EMA RL +RWCI+GTP+QR L+DL+GL+ FL P+ + WW+ ++ PY
Sbjct: 832 PAVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCK 891
Query: 396 GDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVG 455
+ + + F +I+ RS+K V D++Q+PPQ E + WL FSP+E HFY QHE C
Sbjct: 892 KNPQPL---YSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQ 948
Query: 456 YAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSG 515
A ++++ D LK + +L +T +L LL+LRQACCHPQ
Sbjct: 949 DAVVKLRKISDWALKLS--------SLDRRTVT-----SILYPLLRLRQACCHPQAVRGE 995
Query: 516 LRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEA 575
LQ+S ++M+E+L L K E EEA R+LV ALNGLAGI +I+ + A LY+E
Sbjct: 996 FLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYREV 1055
Query: 576 MAVVEEHSEDFRLDPLLNIHLHHNLTEIL 604
+ EEH E + D L +H HNL E+L
Sbjct: 1056 LRSSEEHKEKLKTDSLQRLHATHNLMELL 1084
Score = 147 (56.8 bits), Expect = 1.7e-106, Sum P(4) = 1.7e-106
Identities = 37/101 (36%), Positives = 51/101 (50%)
Query: 14 RPYQRRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYSTLFYNPFSGSLSLSP 73
RPYQR A WM+Q+E + + + L L+YNP++G +
Sbjct: 310 RPYQREAVNWMLQQEHFRSAPASENALHFLWREI-VTSEGLK----LYYNPYTGCIIREY 364
Query: 74 DYTSSYVFGGILADEMGLGKTVELLACIFAH-RKPASDDSI 113
+ GGILADEMGLGKTVE+LA I H R+ D++
Sbjct: 365 PNAGPQLLGGILADEMGLGKTVEVLALILTHTRQDVKQDAL 405
Score = 136 (52.9 bits), Expect = 1.7e-106, Sum P(4) = 1.7e-106
Identities = 45/210 (21%), Positives = 95/210 (45%)
Query: 698 ENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAE 757
+ L++ Y+S + +++ AQQ Q L + S WWL +H A E
Sbjct: 1105 KQLREHYMSKCNTEVAEAQQALLP-VQQTIRDLQRKIYSNSPWWLNVIHRAI-EFGIEEE 1162
Query: 758 LIRKIEEAISGSLNKSRA-LRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQT 816
L++++ I+ + + L + ++ GL + + + +++L +K ++ E +
Sbjct: 1163 LVQRVRNEITSNYKQQTGKLSMSEKFHDCRGLQFLLTTQMEELSKFQK----QVREAVKN 1218
Query: 817 MEKPKEEDMDRMRHCRICY-GVGDGPI--CVHCELDESFQDYEARLFRLKKSQGDIASAE 873
+E P + + IC+ P+ CV C+ DE F +YE++LF +G A E
Sbjct: 1219 LEGPPSRHV--IESATICHLRPARLPLNCCVFCKADELFTEYESKLFS-HTVKGQTAIFE 1275
Query: 874 EAVD-----LQKKNSSLNRFYWYLSQPNKN 898
E ++ + + + +R W +S+ ++
Sbjct: 1276 EMIEDEEGLVDDRIPTTSRGLWAVSETERS 1305
Score = 94 (38.1 bits), Expect = 1.7e-106, Sum P(4) = 1.7e-106
Identities = 30/123 (24%), Positives = 57/123 (46%)
Query: 920 VSKSPSELEVILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYANARSLATAQAQFLR 979
VS++ ++ +L K++ + E I S + + EA +KEY A +
Sbjct: 1299 VSETERSMKALLSFAKSH---RFDIEFIDEGSTSMDLFEAWKKEYKLLHEYWMALRNRVS 1355
Query: 980 AHDEIRMATTRLHLKED----DNDTSVDALSPDELASASVTNSSEKFISMTLLSQVKGKL 1035
A DE+ MAT RL +++ N + + P E+ + ++K ++ + L + G+L
Sbjct: 1356 AVDELAMATERLRVRDPREPKPNPPVLHIIEPHEVEQNRIKLLNDKAVATSQLQKKLGQL 1415
Query: 1036 RYL 1038
YL
Sbjct: 1416 LYL 1418
Score = 70 (29.7 bits), Expect = 1.4e-99, Sum P(4) = 1.4e-99
Identities = 43/182 (23%), Positives = 71/182 (39%)
Query: 711 KLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAE----GNKDFSAELI-RKIEEA 765
+L ++ R+ YM CN +Q + + + N + +I R IE
Sbjct: 1099 RLEEEAKQLREHYMSKCNTEVAEAQQALLPVQQTIRDLQRKIYSNSPWWLNVIHRAIEFG 1158
Query: 766 ISGSLNKSRALRTASRYRSISGLTYHIQSSLD--QLEASRKTLLDRLLEID-QTMEKPKE 822
I L + S Y+ +G + D L+ T ++ L + Q E K
Sbjct: 1159 IEEELVQRVRNEITSNYKQQTGKLSMSEKFHDCRGLQFLLTTQMEELSKFQKQVREAVKN 1218
Query: 823 EDMDRMRH----CRICY-GVGDGPI--CVHCELDESFQDYEARLFRLKKSQGDIASAEEA 875
+ RH IC+ P+ CV C+ DE F +YE++LF +G A EE
Sbjct: 1219 LEGPPSRHVIESATICHLRPARLPLNCCVFCKADELFTEYESKLFS-HTVKGQTAIFEEM 1277
Query: 876 VD 877
++
Sbjct: 1278 IE 1279
Score = 48 (22.0 bits), Expect = 7.5e-10, Sum P(3) = 7.5e-10
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 361 QRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENG 396
Q+ L + +R L+ +S S WW+ VI E G
Sbjct: 1123 QQALLPVQQTIRDLQRKIYSNSPWWLNVIHRAIEFG 1158
Score = 41 (19.5 bits), Expect = 3.6e-18, Sum P(4) = 3.6e-18
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 642 RKCQRVSREENSDFTDAEDPSGHLSD 667
RK Q+ SR+ + TD+E + SD
Sbjct: 537 RKIQKESRKSGNKDTDSEYLPSNTSD 562
Score = 39 (18.8 bits), Expect = 1.7e-08, Sum P(4) = 1.7e-08
Identities = 18/76 (23%), Positives = 31/76 (40%)
Query: 711 KLSVAQQEFRKSYMQVCNA-LDDREKQY--SAWWLEALHHAEGNKDFSAELIRKIEEAIS 767
K ++ +E S + C ++ +Q + L +H +G +AEL R E +
Sbjct: 1001 KSTMTMEELLTSLQKKCGTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYR---EVLR 1057
Query: 768 GSLNKSRALRTASRYR 783
S L+T S R
Sbjct: 1058 SSEEHKEKLKTDSLQR 1073
>UNIPROTKB|K4DI94 [details] [associations]
symbol:SHPRH "SNF2 histone linker PHD RING helicase,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000786 "nucleosome"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006334 "nucleosome assembly" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184 SMART:SM00249
SMART:SM00490 SMART:SM00526 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 EMBL:CH471051
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 EMBL:AL356599 EMBL:AL451145 HGNC:HGNC:19336
OMA:FEGLVKQ Ensembl:ENST00000367503 Uniprot:K4DI94
Length = 1687
Score = 726 (260.6 bits), Expect = 2.0e-103, Sum P(5) = 2.0e-103
Identities = 168/409 (41%), Positives = 229/409 (55%)
Query: 207 WCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTS 266
+C + A + PV+T ATLI+ P+ I QW EI RH R SL+ +Y+G +
Sbjct: 702 YCPHCLVAME-PVSTRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPH 760
Query: 267 IMDISELVGADIVLTTYDVLKEDLSHDSDRHEG--DRRFMRFQKRYPVIPTLLTRIFWWR 324
L DIV+ TYDVL+ +L++ H D R +R QKRY IP+ L + WWR
Sbjct: 761 F-----LAEQDIVIITYDVLRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWR 815
Query: 325 ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRW 384
ICLDEAQMVE A EMA RL +RWCI+GTP+QR L+DL+GL+ FL P+ + W
Sbjct: 816 ICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHW 875
Query: 385 WIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEH 444
W+ ++ PY + + + F +I+ RS+K V D++Q+PPQ E + WL FSP+E H
Sbjct: 876 WVRLLYRPYCKKNP---QHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERH 932
Query: 445 FYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQ 504
FY QHE C ++V+ +L R + S AL + +L LL+LRQ
Sbjct: 933 FYHRQHEVC---CQDVVVKL------RKI----SDWALKLSSLDRRTVTSILYPLLRLRQ 979
Query: 505 ACCHPQ-VGSSGL---RSLQQSPLS-----MDEILMVLIGKTKIEGEEALRKLVMALNGL 555
ACCHPQ V L +S +QS S M+E+L L K E EEA R+LV ALNGL
Sbjct: 980 ACCHPQAVRGEFLPLQKSFEQSTFSFSTMTMEELLTSLQKKCGTECEEAHRQLVCALNGL 1039
Query: 556 AGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEIL 604
AGI +I+ + A LY+E + EEH + D L +H HNL E+L
Sbjct: 1040 AGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELL 1088
Score = 147 (56.8 bits), Expect = 2.0e-103, Sum P(5) = 2.0e-103
Identities = 37/101 (36%), Positives = 52/101 (51%)
Query: 14 RPYQRRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYSTLFYNPFSGSLSLSP 73
RPYQR A WM+Q+E + + + L L+YNP++G +
Sbjct: 305 RPYQREAVNWMLQQECFRSSPATESALHFLWREI-VTSEGLK----LYYNPYTGCIIREY 359
Query: 74 DYTSSYVFGGILADEMGLGKTVELLACIFAH-RKPASDDSI 113
+ + GGILADEMGLGKTVE+LA I H R+ D++
Sbjct: 360 PNSGPQLLGGILADEMGLGKTVEVLALILTHTRQDVKQDAL 400
Score = 134 (52.2 bits), Expect = 2.0e-103, Sum P(5) = 2.0e-103
Identities = 46/210 (21%), Positives = 97/210 (46%)
Query: 698 ENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHA-EGNKDFSA 756
+ L++ Y+S + +++ AQQ Q + L + S WWL +H A E D
Sbjct: 1109 KQLREHYMSKCNTEVAEAQQALYP-VQQTIHELQRKIHSNSPWWLNVIHRAIEFTID--E 1165
Query: 757 ELIRKIEEAISGSLNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQT 816
EL++++ I+ + + +T S GL + + + +++L +K + + + +
Sbjct: 1166 ELVQRVRNEITSNYKQ----QTGKLSMSEKGLQFLLTTQMEELNKCQKLVREAV----KN 1217
Query: 817 MEKPKEEDMDRMRHCRICY-GVGDGPI--CVHCELDESFQDYEARLFRLKKSQGDIASAE 873
+E P ++ + +C+ P+ CV C+ DE F +YE++LF +G A E
Sbjct: 1218 LEGPPSRNV--IESATVCHLRPARLPLNCCVFCKADELFTEYESKLFS-NTVKGQTAIFE 1274
Query: 874 EAVD-----LQKKNSSLNRFYWYLSQPNKN 898
E ++ + + + R W +S+ ++
Sbjct: 1275 EMIEDEEGLVDDRAPTTTRGLWAISETERS 1304
Score = 98 (39.6 bits), Expect = 2.0e-103, Sum P(5) = 2.0e-103
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 136 RVECICGAVSE-SRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMT 194
R ECICG + + RK + VQC C WQHA CV Y + K + + + ++
Sbjct: 658 RFECICGELDQIDRKPR---VQCLKCHLWQHAKCVNYDEKNLKIKPFYCPHCLVAMEPVS 714
Query: 195 N--IVVRDGEHIC-QWCDEL 211
++ IC QW DE+
Sbjct: 715 TRATLIISPSSICHQWVDEI 734
Score = 94 (38.1 bits), Expect = 2.0e-103, Sum P(5) = 2.0e-103
Identities = 30/119 (25%), Positives = 55/119 (46%)
Query: 925 SELEVILGVIKNYCKT-QLGREAISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDE 983
SE E + I ++ K+ + E + S + + EA +KEY A + A DE
Sbjct: 1299 SETERSMKAILSFAKSHRFDVEFVDEGSTSMDLFEAWKKEYKLLHEYWMALRNRVSAVDE 1358
Query: 984 IRMATTRLHLKED----DNDTSVDALSPDELASASVTNSSEKFISMTLLSQVKGKLRYL 1038
+ MAT RL +++ N + + P E+ + ++K ++ + L + G+L YL
Sbjct: 1359 LAMATERLRVRDPREPKPNPPVLHIIEPHEVEQNRIKLLNDKAVATSQLQKKLGQLLYL 1417
Score = 43 (20.2 bits), Expect = 6.2e-94, Sum P(5) = 6.2e-94
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 592 LN-IHLHHNLTEILPMVANCATELSQNEQHFPG---CSEKAFKIHSIETCDENARKCQRV 647
LN IH T +V E++ N + G SEK + + T E KCQ++
Sbjct: 1152 LNVIHRAIEFTIDEELVQRVRNEITSNYKQQTGKLSMSEKGLQF-LLTTQMEELNKCQKL 1210
Query: 648 SRE 650
RE
Sbjct: 1211 VRE 1213
Score = 37 (18.1 bits), Expect = 6.0e-14, Sum P(4) = 6.0e-14
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 361 QRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYE 394
Q+ L + + L+ S S WW+ VI E
Sbjct: 1127 QQALYPVQQTIHELQRKIHSNSPWWLNVIHRAIE 1160
>RGD|1310342 [details] [associations]
symbol:Shprh "SNF2 histone linker PHD RING helicase, E3
ubiquitin protein ligase" species:10116 "Rattus norvegicus"
[GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538 PROSITE:PS50089
PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184 SMART:SM00249
SMART:SM00526 RGD:1310342 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR014001 SMART:SM00487 GO:GO:0006334 GO:GO:0000786
GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218 OrthoDB:EOG4G4GPJ
EMBL:CH473994 IPI:IPI00869721 RefSeq:NP_001100940.1 UniGene:Rn.2515
Ensembl:ENSRNOT00000019893 GeneID:308282 KEGG:rno:308282
UCSC:RGD:1310342 NextBio:658533 Uniprot:D4A9B2
Length = 1701
Score = 711 (255.3 bits), Expect = 1.0e-102, Sum P(5) = 1.0e-102
Identities = 167/420 (39%), Positives = 228/420 (54%)
Query: 207 WCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTS 266
+C + A + PV+T ATLI+ P+ I QW EI RH R SL+ +Y+G +
Sbjct: 700 YCPHCLVAME-PVSTRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPH 758
Query: 267 IMDISELVGADIVLTTYDVLKEDLSHDSDRHEG--DRRFMRFQKRYPVIPTLLTRIFWWR 324
L DIV+ TYDVL+ +L++ H D R +R QKRY IP+ L + WWR
Sbjct: 759 F-----LAEQDIVIITYDVLRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWR 813
Query: 325 ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRW 384
ICLDEAQMVE A EMA RL +RWC++GTP+QR L+DL+GL+ FL P+ + W
Sbjct: 814 ICLDEAQMVECPTVKAAEMAQRLSGINRWCVSGTPVQRGLEDLFGLVVFLGIEPYCVKHW 873
Query: 385 WIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEH 444
WI ++ PY + + + F +IM RS+K V D++Q+PPQ E + WL FSP+E H
Sbjct: 874 WIRLLYHPYCKKNP---QHLYSFIAKIMWRSAKKDVIDQIQIPPQTEEMHWLHFSPVERH 930
Query: 445 FYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQ 504
FY QHE C A ++++ D LK SS + + +L LL+LRQ
Sbjct: 931 FYHRQHEVCCQDAVVKLRKISDWALK------LSS-------LDRRTVSSILYPLLRLRQ 977
Query: 505 ACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKN 564
ACCHPQ LQ+S ++M+E+L L K E EEA R+LV ALNGLAGI +I+
Sbjct: 978 ACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCALNGLAGIHIIKGR 1037
Query: 565 LSQ--------------------AVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEIL 604
+Q A LY+E + EEH + D L +H HNL E+L
Sbjct: 1038 RAQYRAALALPPPECVILSEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELL 1097
Score = 157 (60.3 bits), Expect = 1.0e-102, Sum P(5) = 1.0e-102
Identities = 44/184 (23%), Positives = 90/184 (48%)
Query: 698 ENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAE 757
+ L++ Y+S + +++ AQQ + Q L + S WWL +H A E
Sbjct: 1118 KQLREHYMSKCNTEVAEAQQALQP-VQQSIRELQRKVHSGSPWWLNVVHRAM-EYAVDEE 1175
Query: 758 LIRKIEEAISGSL-NKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQT 816
L++++ IS + +++ L + ++R GL + + + +++L +K + + + +
Sbjct: 1176 LVQRVRNEISSNYKHQTDKLSMSEKFRDCRGLQFLLTTQMEELHKFQKLVREAV----KK 1231
Query: 817 MEKPKEEDMDRMRHCRICY-GVGDGPI--CVHCELDESFQDYEARLFRLKKSQGDIASAE 873
+EKP D+ + +C+ P+ CV C+ DE F +YE++LF +G A E
Sbjct: 1232 LEKPPSRDV--IESATVCHLRPARLPLNCCVFCKADELFTEYESKLFS-NTVKGQTAIFE 1288
Query: 874 EAVD 877
E ++
Sbjct: 1289 EMIE 1292
Score = 155 (59.6 bits), Expect = 1.0e-102, Sum P(5) = 1.0e-102
Identities = 39/101 (38%), Positives = 54/101 (53%)
Query: 14 RPYQRRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYSTLFYNPFSGSLSLSP 73
RPYQR A WM+Q+E+ + P D L+ L+YNP++G +
Sbjct: 299 RPYQREAVNWMLQQEQF-RSTPADNSLHFLWREIVTP-DGLN----LYYNPYTGCIIRDF 352
Query: 74 DYTSSYVFGGILADEMGLGKTVELLACIFAH-RKPASDDSI 113
+ + GGILADEMGLGKTVE+LA I H R+ D++
Sbjct: 353 PHAGPQLLGGILADEMGLGKTVEVLALILTHTRQDVRQDAL 393
Score = 96 (38.9 bits), Expect = 1.0e-102, Sum P(5) = 1.0e-102
Identities = 26/80 (32%), Positives = 37/80 (46%)
Query: 136 RVECICGAVSE-SRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMT 194
R ECICG + RK + VQC C WQHA CV Y + K + + + ++
Sbjct: 656 RFECICGEFDQIGRKPR---VQCLKCHLWQHAKCVNYEEKNLKVKPFYCPHCLVAMEPVS 712
Query: 195 N--IVVRDGEHIC-QWCDEL 211
++ IC QW DE+
Sbjct: 713 TRATLIISPSSICHQWVDEI 732
Score = 89 (36.4 bits), Expect = 1.0e-102, Sum P(5) = 1.0e-102
Identities = 32/123 (26%), Positives = 56/123 (45%)
Query: 920 VSKSPSELEVILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYANARSLATAQAQFLR 979
VS++ ++ IL +++ + E I S + + EA +KEY +
Sbjct: 1312 VSETERSMKAILSFARSH---RFDVEYIDEGSVSMDLFEAWKKEYKLLHEYWMTLRNRVS 1368
Query: 980 AHDEIRMATTRL---HLKEDDNDTSVD-ALSPDELASASVTNSSEKFISMTLLSQVKGKL 1035
A DE+ MAT RL H KE + V + P E+ + ++K ++ + L + G+L
Sbjct: 1369 AVDELAMATERLRVRHPKEPKPNPPVHHIIEPHEVEQNRIKLVNDKAVATSQLQKKLGQL 1428
Query: 1036 RYL 1038
YL
Sbjct: 1429 LYL 1431
Score = 54 (24.1 bits), Expect = 9.1e-16, Sum P(4) = 9.1e-16
Identities = 24/91 (26%), Positives = 42/91 (46%)
Query: 361 QRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHV 420
Q+ L + +R L+ S S WW+ V+ E V E + EI S+ H
Sbjct: 1136 QQALQPVQQSIRELQRKVHSGSPWWLNVVHRAMEYA-VDE-ELVQRVRNEIS--SNYKHQ 1191
Query: 421 SDELQLPPQ-EEC--VSWLTFSPIEE-HFYQ 447
+D+L + + +C + +L + +EE H +Q
Sbjct: 1192 TDKLSMSEKFRDCRGLQFLLTTQMEELHKFQ 1222
Score = 46 (21.3 bits), Expect = 8.6e-10, Sum P(4) = 8.6e-10
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 916 ETVVVSKSPSELEVILGVIKNYCKTQLG---REAISASS--KQLHILEAMRKEYANARSL 970
E + + KS +E +L ++ C T+ R+ + A + +HI++ R +Y A +L
Sbjct: 988 EFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCALNGLAGIHIIKGRRAQYRAALAL 1047
Query: 971 ATAQAQFL 978
+ L
Sbjct: 1048 PPPECVIL 1055
Score = 42 (19.8 bits), Expect = 1.5e-14, Sum P(4) = 1.5e-14
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 441 IEEHFYQSQHETCVGYAREVIQRLKDNI--LKRNVPGHASS 479
+ EH Y S+ T V A++ +Q ++ +I L+R V H+ S
Sbjct: 1120 LREH-YMSKCNTEVAEAQQALQPVQQSIRELQRKV--HSGS 1157
Score = 41 (19.5 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 23/102 (22%), Positives = 45/102 (44%)
Query: 839 DGPICVHCELDESFQDYEARLFRLKKSQGDIASAEEAVDLQKKNSSLNRFYWYLSQPNKN 898
D P +C+ +S + + + KK +G + + V+ + ++S+
Sbjct: 560 DDPYYYYCKARKSRKLKKKPVLLTKKEKGQPVNLDSQVEAPAAGDCASADA-HVSE---- 614
Query: 899 STSSSVGNEEIKRRDVRETVVVSKSPSELEVILGVIKNYCKT 940
ST S N +I+ D E V S SP+ +E+ ++C+T
Sbjct: 615 STCVSE-NRQIQ--DA-EDCVESPSPAAMELAQSNTASFCET 652
Score = 39 (18.8 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 13/63 (20%), Positives = 25/63 (39%)
Query: 908 EIKRRDVRETVVVSKSPSELEVILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYANA 967
++K R+++ T K +I K G++ +S S ++ R +
Sbjct: 413 KVKSREIQNTECEPKEKVHCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSTFRYDVQRN 472
Query: 968 RSL 970
RSL
Sbjct: 473 RSL 475
Score = 37 (18.1 bits), Expect = 4.6e-14, Sum P(4) = 4.6e-14
Identities = 4/8 (50%), Positives = 6/8 (75%)
Query: 740 WWLEALHH 747
WW+ L+H
Sbjct: 873 WWIRLLYH 880
>DICTYBASE|DDB_G0287171 [details] [associations]
symbol:DDB_G0287171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 dictyBase:DDB_G0287171
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AAFI02000098 KO:K15710 RefSeq:XP_637376.1
ProteinModelPortal:Q54KQ4 EnsemblProtists:DDB0233435 GeneID:8625998
KEGG:ddi:DDB_G0287171 InParanoid:Q54KQ4 OMA:QKKANEC Uniprot:Q54KQ4
Length = 1872
Score = 623 (224.4 bits), Expect = 5.6e-74, Sum P(4) = 5.6e-74
Identities = 167/487 (34%), Positives = 251/487 (51%)
Query: 130 RRLKRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYS-PRGKK-RRSTFELKKH 187
+RL + + CICG ES K +G WV+C+ C+ +Q++ CV S PR + + F +
Sbjct: 672 KRLNGDIISCICGKDEESHK-RGNWVKCNSCNKFQYSSCVWASNPRYRGISKFYFCTRCV 730
Query: 188 TRKKDMTNIVVRDG--EHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTR 245
T +D ++ +D E+ +W DE + V + ATLIV P I QW EI +HT
Sbjct: 731 TVPRD-PSLTHQDDQEEYENRW-DET-----TLVGSRATLIVAPNTIFTQWQEEIVKHTN 783
Query: 246 PGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMR 305
LK IY G ++ + D D+VLTTYDVL +D + G + +R
Sbjct: 784 --GLKVYIYNGIYKDKINPFQLADY------DLVLTTYDVLSDDSICLTQISAGKQ--LR 833
Query: 306 FQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAA-TEMALRLYAKHRWCITGTPIQRKL 364
+ K P + L I WWRICLDEAQMVES++ ++AL L + +RWC+TGTPIQR L
Sbjct: 834 YTK-IPTPKSALKCIKWWRICLDEAQMVESSSQTKYKKLALGLESHYRWCLTGTPIQRSL 892
Query: 365 DDLYGLLRFLKSSPFSISRWWIEVIRDPY-ENGDVGAMEFTHKFFKEIMCRSSKVHVSDE 423
DD++GL FL+ PFS WW +I Y G+ +++ H +M R+SK + +E
Sbjct: 893 DDMFGLFEFLRLEPFSSRYWWNCIILHKYLALGEQSFLDWFHCIVHSVMIRNSKAMIRNE 952
Query: 424 LQLPPQ-EECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDAL 482
LQLP Q + L FS +E H+YQ + C AR + Q+ G + D
Sbjct: 953 LQLPNQYDNDTKLLRFSMVEAHYYQKKANECSQEARLLFQKYFRG-------GRSIQDIS 1005
Query: 483 YNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGE 542
I+H + +L LL LRQ C H QVG ++ L S ++M+++L LI IE +
Sbjct: 1006 ----ISHLNS--ILAPLLVLRQTCQHFQVGGHAVKPLTMSTMTMEQLLDRLIENATIEAK 1059
Query: 543 EALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTE 602
+ ++ +LN LA +I S A LY +A+ + + + F++D +H +NL
Sbjct: 1060 NHQKSVIHSLNCLAAARIIRNEFSIASQLYLDAINMFKSNENHFKVDWFQELHTFYNLNF 1119
Query: 603 ILPMVAN 609
+ N
Sbjct: 1120 LFKQFKN 1126
Score = 130 (50.8 bits), Expect = 5.6e-74, Sum P(4) = 5.6e-74
Identities = 67/318 (21%), Positives = 135/318 (42%)
Query: 697 CENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSA-----WWLEALHHAEGN 751
CE L+ YL G + ++ Q+EF + + +V ALD+ +K + W+ AL E
Sbjct: 1186 CEKLRNSYLQGKNHQMLQNQKEFEEYHQKVNEALDEYDKNTNKSEKMPWFERALQLIEEE 1245
Query: 752 KDFSAELI-----RKIEEAISGSLNKSR-ALRTASRYRSISGLTYHIQSSLDQLEASRKT 805
++ ++ +++E + N + +++ + GL+ I + L R
Sbjct: 1246 ENAKPGVVPNPFLKRVETRLFIPRNLPQFQFSIVNKFTNFFGLSLIISKHITDLLKYRVN 1305
Query: 806 LLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVG------DGPICVHCELDESFQDYEARL 859
+ L + + E+D++ +CR C + P+C HC ++ + +L
Sbjct: 1306 FIKTLTPL---LHSFTEKDVEISINCRECCDKTQRTQNLESPVCPHCIAMDNLTLFREKL 1362
Query: 860 FRLKKSQGDIASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRD-VRETV 918
F +Q N+S+ ++ N T +E+ K D +R +
Sbjct: 1363 FSKVGNQNKSRGGGGG----SGNTSM------MTIDNNGLT-----DEQRKDIDSIRLNI 1407
Query: 919 VVSKS--PSELEVILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYANARSLATAQAQ 976
S+S SE+E++L ++ K Q+ + L +L+ M+ E ++A +
Sbjct: 1408 GASESVTDSEVEIVLKLMIPLLK-QIDIDIAKEGEDFLKLLKIMKLELSSASESWASSKN 1466
Query: 977 FLRAHDEIRMATTRLHLK 994
+L + DE+ +TTR+ LK
Sbjct: 1467 YLNSFDEVDSSTTRITLK 1484
Score = 123 (48.4 bits), Expect = 5.6e-74, Sum P(4) = 5.6e-74
Identities = 31/68 (45%), Positives = 38/68 (55%)
Query: 53 FLDTYSTLFYNPFSGSLSLSPDYTSSY-----VFGGILADEMGLGKTVELLACIFAHRKP 107
FL FYN F+G L+L S + GGILADEMGLGKTVE L + +H KP
Sbjct: 517 FLVDKREFFYNQFTGRLTLKEVLLSDKKDDLSLMGGILADEMGLGKTVEFLGLVLSHPKP 576
Query: 108 ASDDSIFI 115
D ++ I
Sbjct: 577 --DKNVII 582
Score = 50 (22.7 bits), Expect = 5.6e-74, Sum P(4) = 5.6e-74
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 14 RPYQRRAAYWMVQRE 28
+PYQ +A WM+ RE
Sbjct: 461 KPYQLKAVNWMLNRE 475
Score = 47 (21.6 bits), Expect = 2.9e-65, Sum P(5) = 2.9e-65
Identities = 16/68 (23%), Positives = 35/68 (51%)
Query: 896 NKNSTSSSVGNEEIKRRDVRETVVVSKSPSELEVILGVIKNYCKTQLGREAISASSKQLH 955
N N+T+S++ + K +++ ++ S+ LE+I +K + Q + SS ++
Sbjct: 1684 NTNTTNSNINIK--KDESIQKIIIFSQWADVLEIISRALKEN-EIQFAKAVHRGSSFEMA 1740
Query: 956 ILEAMRKE 963
I + RK+
Sbjct: 1741 INQ-FRKD 1747
Score = 40 (19.1 bits), Expect = 2.9e-65, Sum P(5) = 2.9e-65
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 723 YMQVCNALDDREKQYSAWWLEALH 746
Y+ N E + W + LH
Sbjct: 1089 YLDAINMFKSNENHFKVDWFQELH 1112
Score = 37 (18.1 bits), Expect = 3.2e-64, Sum P(5) = 3.2e-64
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 996 DDNDTSVDALSPDELASASVTNSSEKFISMTLLSQVK 1032
D+ +D++ + AS SVT+S + + ++ +K
Sbjct: 1394 DEQRKDIDSIRLNIGASESVTDSEVEIVLKLMIPLLK 1430
>POMBASE|SPAC144.05 [details] [associations]
symbol:SPAC144.05 "ATP-dependent DNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006281 "DNA repair" evidence=ISS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0008270 "zinc ion
binding" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=ISM] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 PomBase:SPAC144.05 Prosite:PS00518
GO:GO:0005524 EMBL:CU329670 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0000790 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 GO:GO:0004842 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008094 KO:K15710 OMA:HTWGVSG OrthoDB:EOG4Q2HPM PIR:T37672
RefSeq:NP_594666.1 ProteinModelPortal:Q9UTL9
EnsemblFungi:SPAC144.05.1 GeneID:2542902 KEGG:spo:SPAC144.05
NextBio:20803941 Uniprot:Q9UTL9
Length = 1375
Score = 326 (119.8 bits), Expect = 2.1e-36, Sum P(4) = 2.1e-36
Identities = 83/227 (36%), Positives = 127/227 (55%)
Query: 223 ATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTT 282
ATLI+ P+ IL QW +EI H P SLK Y+G R S+ + + DIV+T+
Sbjct: 332 ATLIITPSTILDQWLSEIDLHV-P-SLKVFHYQGIRKSN----GLKSAKIFLDCDIVVTS 385
Query: 283 YDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATE 342
Y L+ +L + ++ H R +R +KR+ + L + WWRIC+DEAQMVE++ + +
Sbjct: 386 YSDLRFELLY-TESHS---RTLRHEKRHVSPKSPLIDVCWWRICVDEAQMVETSQSNVAQ 441
Query: 343 MALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI--SRWWIEVIRDPYENGDVGA 400
M R+ + W ++GTP++ ++DDL+GLL L+ SP + + W+++I E V
Sbjct: 442 MIYRIPRVNCWTVSGTPVRSEVDDLFGLLFLLRYSPMYLYKKQAWMQII----EKKRV-- 495
Query: 401 MEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQ 447
EF F ++CR SK V +EL+LPPQ S +EE YQ
Sbjct: 496 REFCD-LFGSLVCRHSKQDVEEELKLPPQHRICMTTRLSVVEETNYQ 541
Score = 111 (44.1 bits), Expect = 2.1e-36, Sum P(4) = 2.1e-36
Identities = 35/110 (31%), Positives = 50/110 (45%)
Query: 15 PYQRRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYSTLFYNPFSGSLSLSPD 74
P+Q R WM +RE+ PL L ++ N G ++ S +
Sbjct: 220 PFQMRVLEWMKRREE------EKFLTSNDLPPLWYHCKSLFDDRMVYVNHVYGYMTFSKE 273
Query: 75 YT----SSYVFGGILADEMGLGKTVELLACIFAHRKPAS-DDSIFIDTAV 119
T S + GGILADEMG+GKT+E+L + H+ P S D+ D V
Sbjct: 274 KTYLLASGDIRGGILADEMGMGKTLEVLGLVLHHQLPISLTDTCTFDQVV 323
Score = 97 (39.2 bits), Expect = 2.1e-36, Sum P(4) = 2.1e-36
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 499 LLKLRQACCHPQVGSSGLRSLQQSPL-SMDEILMVLIGKTKIEGEEALRKLVMALNGLAG 557
L++LRQACCHPQVG + P+ S++++L+ ++ +T RKL +
Sbjct: 571 LVRLRQACCHPQVGFGNKSAFGGGPMKSINDVLVFMLEQTNSTFSSLNRKLYSDKIIVGQ 630
Query: 558 IALIEKNLSQAVSLYKEAMAVVE 580
I K+ ++A++++ E VE
Sbjct: 631 IYDHIKDYNKALAIWSEVRIPVE 653
Score = 49 (22.3 bits), Expect = 2.1e-36, Sum P(4) = 2.1e-36
Identities = 22/92 (23%), Positives = 40/92 (43%)
Query: 701 KQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIR 760
KQK+L+ +K SV ++ ++ D+ + + L +E N L+R
Sbjct: 999 KQKFLNSVIIKASVILEK------EISEKQDEASQTTNVAELVNQKISEMNIPGHIHLLR 1052
Query: 761 KIEEAISGSLNKSRALRTASRYRSISGLTYHI 792
++EE S + K + RY ++ L HI
Sbjct: 1053 ELEEEKSNTQRKIAHFESRRRY--LTNLYEHI 1082
Score = 44 (20.5 bits), Expect = 2.5e-30, Sum P(4) = 2.5e-30
Identities = 39/197 (19%), Positives = 79/197 (40%)
Query: 447 QSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQAC 506
Q + + + Y ++ +Q + D+++ P S+ +L N + + K LNS++
Sbjct: 959 QLTYNSRIEYYKQ-LQEISDSLM----PPPVSNISLNNYVKDDEKKQKFLNSVIIKASVI 1013
Query: 507 CHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGE-EALRKLVMAL-NGLAGIALIEKN 564
++ + Q + ++ E++ I + I G LR+L N IA E
Sbjct: 1014 LEKEISEKQDEASQTTNVA--ELVNQKISEMNIPGHIHLLRELEEEKSNTQRKIAHFESR 1071
Query: 565 LSQAVSLYKEAMAVVEEHS-----EDFRLDPLLNI--HLHHN--LTEILPMVANCA---T 612
+LY+ + E H D + HL+ + L L ++C T
Sbjct: 1072 RRYLTNLYEHIVLKAESHQICIICRDIIKQGFITTCGHLYCSFCLEAWLKHSSSCPMCKT 1131
Query: 613 ELSQNEQHFPGCSEKAF 629
+L++N ++ G S +
Sbjct: 1132 KLNKNNAYYIGESRDIY 1148
Score = 43 (20.2 bits), Expect = 2.2e-35, Sum P(5) = 2.2e-35
Identities = 19/65 (29%), Positives = 27/65 (41%)
Query: 741 WLEALHHAEGNKDFSAELIRKIEEAISGSLNKSRALRTASRYRSISGLTYHIQSSLDQLE 800
WL+ L +K F A I I G +K+ L+ RS+ LT H +S L
Sbjct: 1213 WLDVLDVL--HKSFEANGIVFIR--FDGK-SKNTCLKRFKEERSLQVLTLHARSQSSGLT 1267
Query: 801 ASRKT 805
+ T
Sbjct: 1268 LTNAT 1272
Score = 40 (19.1 bits), Expect = 6.3e-30, Sum P(4) = 6.3e-30
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 441 IEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGH 476
+E+ + Q E V + + I + N+PGH
Sbjct: 1014 LEKEISEKQDEA--SQTTNVAELVNQKISEMNIPGH 1047
Score = 39 (18.8 bits), Expect = 2.2e-35, Sum P(5) = 2.2e-35
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 696 VCENLKQKYLSGFSVKLSVAQQEFRKSYM 724
+ ++L++K +S +K S +EF + ++
Sbjct: 721 LAQDLRRKIMSDVIIKTSKHLEEFSEKFI 749
>UNIPROTKB|G4N1L6 [details] [associations]
symbol:MGG_07487 "ATP-dependent DNA helicase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF13639
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 GO:GO:0005524
EMBL:CM001233 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K15710
RefSeq:XP_003711395.1 ProteinModelPortal:G4N1L6
EnsemblFungi:MGG_07487T0 GeneID:2683407 KEGG:mgr:MGG_07487
Uniprot:G4N1L6
Length = 1514
Score = 338 (124.0 bits), Expect = 9.6e-33, Sum P(3) = 9.6e-33
Identities = 86/234 (36%), Positives = 123/234 (52%)
Query: 221 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMD-------ISEL 273
TGATLI+ P + AQW AE+ RH P SL IY+G + S ++ +D + +
Sbjct: 369 TGATLIITPTTLRAQWVAELKRHA-P-SLSVMIYQGMKQSCVNRKKSIDAQSESAMLEKF 426
Query: 274 VGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 333
+ D+V+ TY L+ ++ S + RR R R P+ P L + WWR+CLDEAQ V
Sbjct: 427 MSHDVVIMTYHELRAEIHFASPPPDRSRRRERKYTR-PLSP--LVQCLWWRVCLDEAQEV 483
Query: 334 ESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPY 393
+S + A +A + + W ITGTPI+ + DL GLL FL PF+ S W E++R
Sbjct: 484 DSGVSKAAILARTIPRVNAWAITGTPIKDDIMDLKGLLMFLHCEPFTHSSIWGELVR--- 540
Query: 394 ENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQ 447
D H F + R SK V DEL LP Q+ V + F+ +E+ +YQ
Sbjct: 541 RKSDF------HAIFNTLALRHSKQLVRDELDLPLQKRYVINIPFNAVEDQYYQ 588
Score = 112 (44.5 bits), Expect = 9.6e-33, Sum P(3) = 9.6e-33
Identities = 31/103 (30%), Positives = 47/103 (45%)
Query: 15 PYQRRAAYWMVQRE--KGDXXXXXXXXXXXXXXPLCMPMDFL---DTYSTLFY-----NP 64
P+QRRA W++ RE + + P +P F D + FY +
Sbjct: 249 PFQRRAVRWLLGREGVRWEAGSAAWATVASYEAPRQVPPGFTELRDMHGNSFYASDLLDV 308
Query: 65 FSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKP 107
+ + P Y + GGIL++EMGLGKT+E++ I H P
Sbjct: 309 ATRDIDSIP-YRVDAIKGGILSEEMGLGKTLEMIGLILLHSAP 350
Score = 108 (43.1 bits), Expect = 8.9e-08, Sum P(3) = 8.9e-08
Identities = 50/195 (25%), Positives = 89/195 (45%)
Query: 405 HKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRL 464
H F + R SK V DEL LP Q+ V + F+ +E+ +YQ + +RL
Sbjct: 546 HAIFNTLALRHSKQLVRDELDLPLQKRYVINIPFNAVEDQYYQ-----------RLFRRL 594
Query: 465 KDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPL 524
N N G D ++P A + N L LR+A HP VG+ G + L ++PL
Sbjct: 595 VKNC-DLNEQGEPMVDD-WDP---KDYTAVMRNCLDTLRKAALHPHVGA-GNQVLPRNPL 648
Query: 525 SMDEILMVLIGKTKIEGEEAL--RKLVMALNGLAGIALIEKN--LSQAVSLYKEAMAVVE 580
+M ++ +E +L ++ + +N + L+E + +A+ ++++ + E
Sbjct: 649 ---RTVMQVLDHMLLEAGSSLITKQRALLVNKITQGQLLENSPRKKEALEIWQQVLKETE 705
Query: 581 EHSEDFRLDPLLNIH 595
++ R + LN H
Sbjct: 706 PLVKNVRQE--LNEH 718
Score = 53 (23.7 bits), Expect = 9.6e-33, Sum P(3) = 9.6e-33
Identities = 55/288 (19%), Positives = 117/288 (40%)
Query: 545 LRKLVMALNGL---AGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLT 601
LR ++ L+ + AG +LI K +A+ + K + E+S R L I L
Sbjct: 648 LRTVMQVLDHMLLEAGSSLITKQ--RALLVNKITQGQLLENSP--RKKEALEIW-QQVLK 702
Query: 602 EILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDP 661
E P+V N EL++++++ ++ K+ + A+ ++ S ++ +D+
Sbjct: 703 ETEPLVKNVRQELNEHQKYVEKERKERQKLEKLV----KAKAAEK-SDSDSDSHSDSSSS 757
Query: 662 SGHLSDLSENGFNGDRKXXXXXXXXXXXXXXLITVCENLKQKYLSGFSVKLSVAQQEFRK 721
S S LSE+ L+ + +++K S ++ V
Sbjct: 758 SA-ASSLSESSSPEAESLVVRLDKVRRKLKSLLDIQSEMQRKLRSLLEIEHKVVFF-IGN 815
Query: 722 SYMQVCNALD----DREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKSRALR 777
+Y Q+ + D D E+ LE +++ K E++++ + +N+ A
Sbjct: 816 AYFQIKSDEDMTEPDSEEFKQLAGLEDQYYSRAKK-IRQEILQEANHKATRMMNRIEARA 874
Query: 778 TASRYRSISGLTYHIQ------SSLDQLEASRKTLLDRLLEIDQTMEK 819
+ I L ++ S +D+++ +TL D+ +D+ E+
Sbjct: 875 KKQDFAVIPELRCDLRPGVETMSIVDRVQVLCETLNDQANWLDEWRER 922
Score = 48 (22.0 bits), Expect = 3.2e-32, Sum P(3) = 3.2e-32
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 995 EDDNDTSVDALSPDELASASVTNSSEKFISMTLLSQVKGKLRYL 1038
+ D+D+ D+ S +S S ++S E + L +V+ KL+ L
Sbjct: 745 DSDSDSHSDSSSSSAASSLSESSSPEAESLVVRLDKVRRKLKSL 788
Score = 41 (19.5 bits), Expect = 1.7e-31, Sum P(3) = 1.7e-31
Identities = 14/64 (21%), Positives = 24/64 (37%)
Query: 609 NCATELSQNEQHFPGCSE--KAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLS 666
+C E + + P C + +++H + + + E D T E SGH
Sbjct: 1182 DCLLEWLKRAPNCPTCKRGVQRYQLHPFVLKTRDLKLVEN-DGENGDDSTPTEANSGHQP 1240
Query: 667 DLSE 670
SE
Sbjct: 1241 TRSE 1244
>ASPGD|ASPL0000031617 [details] [associations]
symbol:AN10707 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 Prosite:PS00518 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:BN001305 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HTWGVSG
EnsemblFungi:CADANIAT00003281 HOGENOM:HOG000181800 Uniprot:C8VFF9
Length = 1415
Score = 346 (126.9 bits), Expect = 3.5e-32, Sum P(3) = 3.5e-32
Identities = 150/548 (27%), Positives = 251/548 (45%)
Query: 221 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGA-RNSSLSDTSIMDISELVGADIV 279
+GATLI+ P IL QW EI H P L+ Y G R+ +LSD ++++ + D+V
Sbjct: 320 SGATLIITPPVILGQWKQEIELHA-P-KLQVFHYTGIQRHPTLSDQELVEL--MADNDVV 375
Query: 280 LTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA 339
LTTY+VL ++ + +R +R +KR+ + L +I WWR+CLDEAQM+ES +
Sbjct: 376 LTTYNVLAREIHYAG---VAPKRNLRHEKRFEPRKSPLIKISWWRVCLDEAQMIESGISN 432
Query: 340 ATEMALRLYAKH-RWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDV 398
A ++A RL +H W +TGTP+++ + DL GLL FL+ PF W + D
Sbjct: 433 AAKVA-RLIPRHIAWAVTGTPLRKDVTDLLGLLLFLRYEPFC-GPIWKRLC-------DA 483
Query: 399 GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFY-QSQHETCVGYA 457
+ I R SK + +EL LPPQ+ V + F+ +EE Y Q E C
Sbjct: 484 TFKPVLARIVNTITLRHSKNFIREELHLPPQKRIVITVPFTAVEEQSYRQLYEEMCEDCG 543
Query: 458 REVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLR 517
+ ++N N P +I ++ + L++LRQ+C +P +
Sbjct: 544 LDSSGSPRNNDWNPNDPS----------VID-----RMRSWLVRLRQSCLYPTGNRRKVF 588
Query: 518 SLQQSPL-SMDEILMVLIGKTK--IEGEEALRKLVMALNGLAGIALIE--KNLSQAVSLY 572
+ PL S++++L V+I + I EE R L+ L+ L L+E K +A+SL+
Sbjct: 589 AAGNGPLRSVNDVLEVMIDQNDALIHAEE--RSLL--LSQLRRGQLLENAKLKREALSLW 644
Query: 573 KEAMA----VVEEHSEDFR------LDPLLNIHLHHNLTEILPMVANCATELSQNEQ-H- 620
K ++ V++ E + L PL N H E L + + E +N + H
Sbjct: 645 KNSLHRASDTVQQCRERLQTERKKQLTPLAN-GAHD---ERLSFSDDESEETEKNSRLHV 700
Query: 621 FPGCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDR--K 678
F A ++ I Q S E + D+E+ L+ L E + + +
Sbjct: 701 FRQRLRTALEVEHIAVFFTGNAYFQIKSDHELTK-PDSEEFQA-LTKLEEEAYAKAKLIR 758
Query: 679 XXXXXXXXXXXXXXLITVCENLKQK-YLSGFSVKLSVAQQ--EFRKSYMQV---CNALDD 732
+ + E ++K +++ +KL + + E R+ + ++ C+ ++D
Sbjct: 759 QEMLTEISRKAKHYVKRIKEKAEKKDFVAIPEMKLHMYSKGLESRRVFERLQDFCDMMND 818
Query: 733 REKQYSAW 740
QY W
Sbjct: 819 HAAQYKEW 826
Score = 100 (40.3 bits), Expect = 3.5e-32, Sum P(3) = 3.5e-32
Identities = 30/109 (27%), Positives = 50/109 (45%)
Query: 15 PYQRRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYSTLFYNPFSGSL----- 69
P+QRRA W++ RE + + +P F F+ L
Sbjct: 203 PFQRRAVRWLLNREGKELNSNGQVVPLENRSKIGLPDSFQQITDADGKVCFASHLYMVVT 262
Query: 70 -SLSPDYT-SSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFID 116
LS Y + ++ GG+LA+EMGLGKTVE+++ + +R+ + F +
Sbjct: 263 RDLSGWYNVNEHLKGGVLAEEMGLGKTVEMISLMCLNRRILRPEETFAE 311
Score = 50 (22.7 bits), Expect = 3.5e-32, Sum P(3) = 3.5e-32
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 957 LEAMRKEYANARSLATAQAQFLRAHDEIRMATTRLHLKEDDNDT 1000
+EA+R +A+ T Q L AH E+++A ++ E + T
Sbjct: 866 MEALRALFADRHDALTGQKNVLIAH-EVKVAISQAQKGEGPSPT 908
Score = 40 (19.1 bits), Expect = 3.8e-31, Sum P(3) = 3.8e-31
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 921 SKSPSELEVILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYAN 966
+++ +ELE++ V+KN T + E +S +E R N
Sbjct: 952 TRARAELEILTKVLKNV--TDISTEQTKIASNLEREVEMFRDTMNN 995
>TAIR|locus:2158357 [details] [associations]
symbol:AT5G43530 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0009941 "chloroplast envelope" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS00690
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0009941 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AB016875 KO:K15505 OMA:PCAHRMC
HOGENOM:HOG000029930 ProtClustDB:CLSN2686824 IPI:IPI00529351
RefSeq:NP_199166.1 UniGene:At.55338 ProteinModelPortal:Q9FIY7
SMR:Q9FIY7 PaxDb:Q9FIY7 PRIDE:Q9FIY7 EnsemblPlants:AT5G43530.1
GeneID:834373 KEGG:ath:AT5G43530 GeneFarm:4653 TAIR:At5g43530
InParanoid:Q9FIY7 PhylomeDB:Q9FIY7 Genevestigator:Q9FIY7
GermOnline:AT5G43530 Uniprot:Q9FIY7
Length = 1277
Score = 239 (89.2 bits), Expect = 5.4e-32, Sum P(5) = 5.4e-32
Identities = 52/136 (38%), Positives = 73/136 (53%)
Query: 315 TLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 374
++ RI W+RI LDEA ++S A + L + RWC+TGTP+Q KL+DLY LL FL
Sbjct: 809 SIFHRIDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPLQNKLEDLYSLLCFL 868
Query: 375 KSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDE----LQLPPQE 430
P+ WW ++I+ PYENGD ++ + +M R +K E L+LPP +
Sbjct: 869 HVEPWCNWAWWSKLIQKPYENGDPRGLKLIKAILRPLMLRRTKETRDKEGSLILELPPTD 928
Query: 431 ECVSWLTFSPIEEHFY 446
V S E FY
Sbjct: 929 VQVIECEQSEAERDFY 944
Score = 133 (51.9 bits), Expect = 5.4e-32, Sum P(5) = 5.4e-32
Identities = 36/120 (30%), Positives = 56/120 (46%)
Query: 14 RPYQRRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYS-TLFYNPFSGSLSLS 72
RPYQ++A YWM + EKG P D + +++ N FSG ++
Sbjct: 617 RPYQKQALYWMSESEKG----IDVEKAAETLHPCWEAYRICDERAPSIYLNIFSGEATIQ 672
Query: 73 PDYTSSYVFGGILADEMGLGKTVELLACIFAHR---KPASDDSIFIDTAVQVTDDQKVNL 129
+ GGILAD MGLGKTV +A I A P ++D + D + +++++
Sbjct: 673 FPTATQMARGGILADAMGLGKTVMTIALILARPGRGNPENEDVLVADVNADKRNRKEIHM 732
Score = 121 (47.7 bits), Expect = 5.4e-32, Sum P(5) = 5.4e-32
Identities = 28/87 (32%), Positives = 46/87 (52%)
Query: 210 ELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMD 269
E+ A + A G TLI+CP +L+QW E+ H++P ++ +Y G + D
Sbjct: 729 EIHMALTTVKAKGGTLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTH-------D 781
Query: 270 ISELVGADIVLTTYDVL----KEDLSH 292
+ D+VLTTY VL K+D+++
Sbjct: 782 AKAIASHDVVLTTYGVLTSAYKQDMAN 808
Score = 56 (24.8 bits), Expect = 5.4e-32, Sum P(5) = 5.4e-32
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 493 AKLLNSLLKLRQACCHPQVGSSGLRSLQQSPL 524
A +L LL+LRQ C HP + S S Q + L
Sbjct: 969 ANILELLLRLRQCCNHPFLVMSRADSQQYADL 1000
Score = 50 (22.7 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 198 VRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQW 236
+RDG + C +E+ D PV T +C +L W
Sbjct: 1032 LRDGNS--KECPICLESADDPVLTPCAHRMCRECLLTSW 1068
Score = 46 (21.3 bits), Expect = 1.6e-31, Sum P(4) = 1.6e-31
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 844 VHCELDESFQDYEARLFRLKKSQGD 868
+ CE E+ +D+ LF+ K Q D
Sbjct: 932 IECEQSEAERDFYTALFKRSKVQFD 956
Score = 39 (18.8 bits), Expect = 8.5e-31, Sum P(4) = 8.5e-31
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 448 SQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIIT 488
SQ+ Y EVIQ L+D K S+D +P++T
Sbjct: 1016 SQNAPSRAYIEEVIQDLRDGNSKECPICLESAD---DPVLT 1053
Score = 38 (18.4 bits), Expect = 5.4e-32, Sum P(5) = 5.4e-32
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 829 RHCRICYGVGDGPICVHC 846
+ C IC D P+ C
Sbjct: 1038 KECPICLESADDPVLTPC 1055
>FB|FBgn0035689 [details] [associations]
symbol:CG7376 species:7227 "Drosophila melanogaster"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF00176 PROSITE:PS50005 PROSITE:PS50089
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
Prosite:PS00518 GO:GO:0005524 GO:GO:0022008 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 EMBL:BT001896
ProteinModelPortal:Q8IG89 PaxDb:Q8IG89 PRIDE:Q8IG89
FlyBase:FBgn0035689 InParanoid:Q8IG89 OrthoDB:EOG470RZ4
ArrayExpress:Q8IG89 Bgee:Q8IG89 Uniprot:Q8IG89
Length = 1285
Score = 366 (133.9 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 117/363 (32%), Positives = 181/363 (49%)
Query: 168 CVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWC-DELIEATDSPVATGATLI 226
C+ GK+ + T + ++ + MT + H+C C EL+++ + V +GAT+I
Sbjct: 296 CICTKKHGKRVQCT-KCRRWQHEMCMTISDTSNVPHLCPSCWSELVKSGERLVESGATII 354
Query: 227 VCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVL 286
V P I QW EI +H P SLK +Y G ++ S D+++ D+VLT Y +L
Sbjct: 355 VSPNAIKMQWFEEIHKHISP-SLKVLLYFGLHSTFW--VSPFDLAQY---DVVLTDYTIL 408
Query: 287 KEDLSHDSDRHEGDRRFMRFQKRY--PVIPTLLTRIFWWRICLDEAQMVESNAAAATEMA 344
+ ++ H +D + DR+ MR Q+RY P P L+ WWR+CLDEAQMVES+ +AA EM
Sbjct: 409 RNEIYHTTD-FKSDRQ-MRHQQRYMRPNSPLLMVN--WWRVCLDEAQMVESSTSAAAEMV 464
Query: 345 LRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDP--YENGDVGAME 402
L A +RW +TGT +D+L LL F+ P EV R P ++ D A +
Sbjct: 465 RMLPAINRWAVTGT-----IDELPPLLEFV-GRP--------EVCRPPDAWQTVDK-AFQ 509
Query: 403 FTHK------FFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETC-VG 455
+K + + R+ K V EL +PPQ E V L S +E +Y+ +H C
Sbjct: 510 LNYKCEPLLELLEHSLWRTCKSKVEHELGIPPQTEVVHRLELSNVESLYYREEHLKCHEQ 569
Query: 456 YAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSG 515
+ V + + N ++S A +P + +L L++RQ C P V +S
Sbjct: 570 FLAAVAKHTRHNA------DNSSCLASISPQLLRI----ILKPFLRIRQTCSVPVVFNSN 619
Query: 516 LRS 518
+ S
Sbjct: 620 VSS 622
Score = 164 (62.8 bits), Expect = 5.5e-20, Sum P(3) = 5.5e-20
Identities = 53/191 (27%), Positives = 88/191 (46%)
Query: 414 RSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETC-VGYAREVIQRLKDNILKRN 472
R+ K V EL +PPQ E V L S +E +Y+ +H C + V + + N
Sbjct: 527 RTCKSKVEHELGIPPQTEVVHRLELSNVESLYYREEHLKCHEQFLAAVAKHTRHNA---- 582
Query: 473 VPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMV 532
++S A +P + +L L++RQ C P V +S + S L ++L
Sbjct: 583 --DNSSCLASISPQLLRI----ILKPFLRIRQTCSVPVVFNSNVSSTDY--LHPQDLLAR 634
Query: 533 LIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSE-DFRLDPL 591
L + E + LR + NGLA I I+ + QA+ Y + + E++E + +D +
Sbjct: 635 LKSNNENECKTELRTWASSYNGLAAIYFIKNDFPQAIKYYNLLLKLANEYNEQNISVDSV 694
Query: 592 LNIHLHHNLTE 602
L IH +NL +
Sbjct: 695 LQIHAIYNLLQ 705
Score = 161 (61.7 bits), Expect = 5.5e-20, Sum P(3) = 5.5e-20
Identities = 71/246 (28%), Positives = 104/246 (42%)
Query: 14 RPYQRRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYSTLFYNPFSGSLSLSP 73
R YQ+R WM+ RE+ + F Y FY PF + P
Sbjct: 176 RKYQQRTVSWMLGREQQITQVPANFIVLHAIDGITRV--FKHKYCLQFY-PFEEEI---P 229
Query: 74 DYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASD--DSIFIDTAVQVTDDQKVNLRR 131
S GGILADEMGLGKTVE LA + + +P + + + +D+ + R
Sbjct: 230 KI--SLPPGGILADEMGLGKTVEFLAMLLMNPRPQDSYRNDYWHQRLEEFSDEVPLKRSR 287
Query: 132 L-KRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRR---STF-ELKK 186
+ K++ V CIC ++K+ G VQC C WQH C+ S S + EL K
Sbjct: 288 ISKKDEVFCIC-----TKKH-GKRVQCTKCRRWQHEMCMTISDTSNVPHLCPSCWSELVK 341
Query: 187 HTRK--KDMTNIVVRDGEHICQWCDELIEATDSPVAT----G--ATLIVCPAPILAQWDA 238
+ + I+V QW +E+ + + G +T V P LAQ+D
Sbjct: 342 SGERLVESGATIIVSPNAIKMQWFEEIHKHISPSLKVLLYFGLHSTFWVSPFD-LAQYDV 400
Query: 239 EITRHT 244
+T +T
Sbjct: 401 VLTDYT 406
Score = 59 (25.8 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 31/136 (22%), Positives = 58/136 (42%)
Query: 910 KRRDVRETVVVS-KSPS-ELEVILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYANA 967
K+ D + TV ++PS E+ I + Q E +L +L ++ +
Sbjct: 910 KKLDEKATVTEGLENPSMEISFIKSIFAFLRSKQDFSEWKEECQSKLELLSCLQ-DLVKF 968
Query: 968 RSLATAQAQFL-RAHDEIRMATTRLHLKEDDNDTS---VDALSPDELASASVTNSSEKFI 1023
+ + +++ +A DE+ M R+ L +D + S + A DE + N +
Sbjct: 969 QIKYWIEVEYMVKAFDELEMCKMRILLTDDPEEQSNYRILACQLDEQLQFNQYNLQTSQL 1028
Query: 1024 SMTLLSQVKGKLRYLK 1039
+ T L G+L+YLK
Sbjct: 1029 NFTRLC---GRLKYLK 1041
Score = 57 (25.1 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 21/86 (24%), Positives = 43/86 (50%)
Query: 927 LEVILGVIKNYCKTQLGRE-AISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDEIR 985
LE++ + CK+++ E I ++ +H R E +N SL + + L+ H++
Sbjct: 518 LELLEHSLWRTCKSKVEHELGIPPQTEVVH-----RLELSNVESLYYRE-EHLKCHEQFL 571
Query: 986 MATTRLHLKED-DNDTSVDALSPDEL 1010
A + H + + DN + + ++SP L
Sbjct: 572 AAVAK-HTRHNADNSSCLASISPQLL 596
Score = 42 (19.8 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 966 NARSLATAQAQFLRAHDEIRMATTRLHLKEDDND 999
N +L T+Q F R ++ HLKED D
Sbjct: 1019 NQYNLQTSQLNFTRLCGRLKYLK---HLKEDSAD 1049
Score = 39 (18.8 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 7/35 (20%), Positives = 19/35 (54%)
Query: 945 EAISASSKQLHILEAMRKEYANARSLATAQAQFLR 979
E +++ + L+ ++ + N +S A+ +FL+
Sbjct: 805 ENVNSMAGMLYFMDIWHNKLQNLKSTLIAEFEFLK 839
Score = 39 (18.8 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 19/86 (22%), Positives = 35/86 (40%)
Query: 283 YDVLKEDLSHDSDRHEGDRRFMRFQKRYPV-IPTLLTRIFWWRICLDEA-QMVESNAAA- 339
YD L E H H R + KR+ + R W + ++ V +N
Sbjct: 146 YDALYE--KHRQTVHVELERSLDLPKRFQSQLRKYQQRTVSWMLGREQQITQVPANFIVL 203
Query: 340 -ATEMALRLYAKHRWCITGTPIQRKL 364
A + R++ KH++C+ P + ++
Sbjct: 204 HAIDGITRVF-KHKYCLQFYPFEEEI 228
>MGI|MGI:1196437 [details] [associations]
symbol:Hltf "helicase-like transcription factor"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0008152 "metabolic
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 UniPathway:UPA00143 MGI:MGI:1196437
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 GO:GO:0016568 GO:GO:0016887 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:6596 HOVERGEN:HBG079192 KO:K15711 OMA:SNWIDQF
EMBL:AF010138 EMBL:AF010600 EMBL:BC039796 EMBL:BC057116
EMBL:BC059240 IPI:IPI00315178 RefSeq:NP_033236.2 RefSeq:NP_659208.2
UniGene:Mm.209650 ProteinModelPortal:Q6PCN7 SMR:Q6PCN7
STRING:Q6PCN7 PhosphoSite:Q6PCN7 PRIDE:Q6PCN7
Ensembl:ENSMUST00000002502 GeneID:20585 KEGG:mmu:20585
UCSC:uc008osk.1 GeneTree:ENSGT00700000104586 HOGENOM:HOG000172619
InParanoid:Q6PCN7 OrthoDB:EOG47SSD6 NextBio:298877 Bgee:Q6PCN7
CleanEx:MM_HLTF Genevestigator:Q6PCN7 GermOnline:ENSMUSG00000002428
Uniprot:Q6PCN7
Length = 1003
Score = 234 (87.4 bits), Expect = 1.3e-28, Sum P(5) = 1.3e-28
Identities = 51/135 (37%), Positives = 68/135 (50%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L I W R+ LDE + + A T+ L L A+ RW +TGTPIQ L DL+ LL FLK
Sbjct: 540 LHSIKWLRVILDEGHAIRNPNAQQTKAVLELEAERRWVLTGTPIQNSLKDLWSLLSFLKL 599
Query: 377 SPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCR---SSKVHVSDELQLPPQEECV 433
PF WW +I+ P GD G + K I R +SK+ L+LP ++ +
Sbjct: 600 KPFIDREWWYRIIQRPVTTGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVFI 659
Query: 434 SWLTFSPIEEHFYQS 448
+T S E YQS
Sbjct: 660 QHITLSEEERKIYQS 674
Score = 104 (41.7 bits), Expect = 1.3e-28, Sum P(5) = 1.3e-28
Identities = 29/87 (33%), Positives = 41/87 (47%)
Query: 210 ELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIM 268
E EA D+ T ATLI+CP +L+ W + +H + L +Y G I
Sbjct: 458 ECSEACDTGERTRATLIICPLSVLSNWIDQFGQHVKSEVHLNFYVYYGPDR-------IR 510
Query: 269 DISELVGADIVLTTYDVLKEDLSHDSD 295
D + L DI+LTTY++L D D
Sbjct: 511 DSAWLSKQDIILTTYNILTHDYGTKDD 537
Score = 82 (33.9 bits), Expect = 1.3e-28, Sum P(5) = 1.3e-28
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 53 FLDTYSTLFYNPFSG-SLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAH 104
F + + L+YN + S+ P+ V GGILAD+MGLGKT+ +A I +
Sbjct: 263 FWEQRNDLYYNTITNFSVKERPEN----VHGGILADDMGLGKTLTAIAVILTN 311
Score = 81 (33.6 bits), Expect = 1.3e-28, Sum P(5) = 1.3e-28
Identities = 28/92 (30%), Positives = 43/92 (46%)
Query: 449 QHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCH 508
QH T R++ Q +K+ G A+ + A A +L LL+LRQ CCH
Sbjct: 660 QHITLSEEERKIYQSVKNE-------GKAAIGRYFTEGTVLAHYADVLGLLLRLRQICCH 712
Query: 509 PQVGSSGLRSLQQSPLSM-DEILMVLIGKTKI 539
+ ++G+ S S +E+ +LI K KI
Sbjct: 713 THLLTNGMSSSGPSRSDTPEELRKMLIEKMKI 744
Score = 55 (24.4 bits), Expect = 1.2e-23, Sum P(5) = 1.2e-23
Identities = 20/63 (31%), Positives = 27/63 (42%)
Query: 172 SPRGKKRRSTFELKKHTRKKDMTNIVVR-DGEHICQWCDELIEATDSPVATGATLI---- 226
S RGKK E K T K+ +N+ + DG C E + +P + TL
Sbjct: 320 SKRGKKNHPGKEYKDETIKRRGSNMDKKEDGHSESSTCGEEPSISGTPEKSSCTLSQLSS 379
Query: 227 VCP 229
VCP
Sbjct: 380 VCP 382
Score = 46 (21.3 bits), Expect = 1.3e-28, Sum P(5) = 1.3e-28
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 15 PYQRRAAYWMVQRE 28
P+Q++A WM+ RE
Sbjct: 242 PHQKQALAWMIARE 255
Score = 41 (19.5 bits), Expect = 0.00013, Sum P(4) = 0.00013
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 412 MCRSSKVHVSDELQLPPQE 430
+CR+ ++H + L+ PP+E
Sbjct: 793 LCRN-EIHGDNLLECPPEE 810
Score = 39 (18.8 bits), Expect = 2.3e-24, Sum P(5) = 2.3e-24
Identities = 15/61 (24%), Positives = 26/61 (42%)
Query: 786 SGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVH 845
+G++ S D E RK L++++ I + +E+ C IC P+ H
Sbjct: 718 NGMSSSGPSRSDTPEELRKMLIEKMKII---LSSGSDEE------CAICLDSLTFPVITH 768
Query: 846 C 846
C
Sbjct: 769 C 769
Score = 38 (18.4 bits), Expect = 1.6e-17, Sum P(3) = 1.6e-17
Identities = 17/56 (30%), Positives = 24/56 (42%)
Query: 241 TRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDR 296
T T SL+ G S S + + + + D + T +D L EDL D DR
Sbjct: 174 TPKTLGSSLENAWGSGRAGPSYSRPAHVAVQ--MTTDQLKTEFDKLFEDLKED-DR 226
>TAIR|locus:2162504 [details] [associations]
symbol:RAD5 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IMP;IDA] [GO:0045003 "double-strand break
repair via synthesis-dependent strand annealing" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
[GO:0009294 "DNA mediated transformation" evidence=IMP]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS00690 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0016568 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 EMBL:AB006699 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0009294 GO:GO:0045003 KO:K15505 EMBL:AK228695 IPI:IPI00523984
RefSeq:NP_197667.1 UniGene:At.31042 ProteinModelPortal:Q9FNI6
SMR:Q9FNI6 STRING:Q9FNI6 PaxDb:Q9FNI6 PRIDE:Q9FNI6
EnsemblPlants:AT5G22750.1 GeneID:832338 KEGG:ath:AT5G22750
GeneFarm:4640 TAIR:At5g22750 HOGENOM:HOG000029930 InParanoid:Q9FNI6
OMA:KPIMLRR PhylomeDB:Q9FNI6 ProtClustDB:CLSN2686824
Genevestigator:Q9FNI6 GermOnline:AT5G22750 Uniprot:Q9FNI6
Length = 1029
Score = 260 (96.6 bits), Expect = 1.4e-27, Sum P(3) = 1.4e-27
Identities = 72/212 (33%), Positives = 103/212 (48%)
Query: 247 GSLKTCIYEGARNSSLS------DTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300
G KT I A+ SLS + D L +D+V+TTY VL + S ++ D
Sbjct: 502 GQWKTEIEMHAKPGSLSVYVHYGQSRPKDAKLLSQSDVVITTYGVLTSEFSQENS---AD 558
Query: 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPI 360
+ Y V R W+RI LDEA ++++ + + A L A RWC+TGTPI
Sbjct: 559 HEGI-----YAV------R--WFRIVLDEAHTIKNSKSQISLAAAALVADRRWCLTGTPI 605
Query: 361 QRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHV 420
Q L+DLY LLRFL+ P+ WW ++++ P+E GD ++ K IM R +K
Sbjct: 606 QNNLEDLYSLLRFLRIEPWGTWAWWNKLVQKPFEEGDERGLKLVQSILKPIMLRRTKSST 665
Query: 421 SDE----LQLPPQEECVSWLTFSPIEEHFYQS 448
E L LPP + V + S E FY +
Sbjct: 666 DREGRPILVLPPADARVIYCELSESERDFYDA 697
Score = 140 (54.3 bits), Expect = 1.0e-14, Sum P(3) = 1.0e-14
Identities = 33/92 (35%), Positives = 47/92 (51%)
Query: 209 DELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIM 268
D+ + S + G LIVCP +L QW EI H +PGSL ++ G S D ++
Sbjct: 477 DKRLLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHAKPGSLSVYVHYG--QSRPKDAKLL 534
Query: 269 DISELVGADIVLTTYDVLKEDLSHDSDR-HEG 299
S D+V+TTY VL + S ++ HEG
Sbjct: 535 SQS-----DVVITTYGVLTSEFSQENSADHEG 561
Score = 137 (53.3 bits), Expect = 1.4e-27, Sum P(3) = 1.4e-27
Identities = 36/98 (36%), Positives = 48/98 (48%)
Query: 14 RPYQRRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYSTLFY-NPFSGSLSLS 72
RPYQ++A +WM Q EKG+ C+ D + Y N F+G ++
Sbjct: 349 RPYQKQALHWMTQLEKGNCTDEAATMLHPCWEAYCLA----DKRELVVYLNSFTGDATIH 404
Query: 73 PDYTSSYVFGGILADEMGLGKTVELLACIFAHR-KPAS 109
T GGILAD MGLGKTV ++ + AH K AS
Sbjct: 405 FPSTLQMARGGILADAMGLGKTVMTISLLLAHSWKAAS 442
Score = 53 (23.7 bits), Expect = 1.4e-27, Sum P(3) = 1.4e-27
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 493 AKLLNSLLKLRQACCHP 509
A +L LL+LRQ C HP
Sbjct: 720 ASILELLLRLRQCCDHP 736
Score = 51 (23.0 bits), Expect = 2.2e-27, Sum P(3) = 2.2e-27
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 844 VHCELDESFQDYEARLFRLKKSQGD 868
++CEL ES +D+ LF+ K + D
Sbjct: 683 IYCELSESERDFYDALFKRSKVKFD 707
Score = 41 (19.5 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 198 VRDGEH-ICQWCDELIEATDSPVATGATLIVCPAPILAQW 236
+R GE C C +EA + V T +C +LA W
Sbjct: 786 LRKGEQGECPIC---LEALEDAVLTPCAHRLCRECLLASW 822
>RGD|1309031 [details] [associations]
symbol:Hltf "helicase-like transcription factor" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 RGD:1309031 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 IPI:IPI00372747
Ensembl:ENSRNOT00000000095 UCSC:RGD:1309031 ArrayExpress:F1LT77
Uniprot:F1LT77
Length = 1004
Score = 234 (87.4 bits), Expect = 1.4e-27, Sum P(5) = 1.4e-27
Identities = 51/135 (37%), Positives = 69/135 (51%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L I W R+ LDE + + A T+ L L A+ RW +TGTPIQ L DL+ LL FLK
Sbjct: 541 LHSIKWLRVILDEGHAIRNPNAQQTKAVLELEAERRWVLTGTPIQNSLKDLWSLLSFLKL 600
Query: 377 SPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCR---SSKVHVSDELQLPPQEECV 433
PF+ WW +I+ P GD G + K I R +SK+ L+LP ++ +
Sbjct: 601 KPFTDREWWHRIIQRPVTTGDEGGLRRLQSLIKSITLRRTKTSKIKGKPVLELPERKVFI 660
Query: 434 SWLTFSPIEEHFYQS 448
+T S E YQS
Sbjct: 661 QHITLSVEERKIYQS 675
Score = 93 (37.8 bits), Expect = 1.4e-27, Sum P(5) = 1.4e-27
Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 216 DSPVATGATLIVCPAPILAQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIMDISELV 274
D+ T TLI+CP +L+ W +I +H + L +Y G I D + L
Sbjct: 465 DTGERTRTTLIICPLSVLSNWIDQIGQHIKSEVDLNLYVYYGPDR-------IRDSTWLS 517
Query: 275 GADIVLTTYDVLKED 289
DI+LTTY++L D
Sbjct: 518 KQDIILTTYNILTHD 532
Score = 82 (33.9 bits), Expect = 1.4e-27, Sum P(5) = 1.4e-27
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 53 FLDTYSTLFYNPFSG-SLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAH 104
F + + L+YN + S+ P+ V GGILAD+MGLGKT+ +A I +
Sbjct: 262 FWELRNDLYYNTITNFSVKERPEN----VHGGILADDMGLGKTLTAIAVILTN 310
Score = 82 (33.9 bits), Expect = 1.4e-27, Sum P(5) = 1.4e-27
Identities = 41/169 (24%), Positives = 71/169 (42%)
Query: 449 QHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCH 508
QH T R++ Q +K+ G A+ + A A +L LL+LRQ CCH
Sbjct: 661 QHITLSVEERKIYQSVKNE-------GKATIARYFTEGTVLAHYADVLGLLLRLRQICCH 713
Query: 509 PQVGSSGLRSLQQSPLSM-DEILMVLIGKTK-IEGEEALRKLVMALNGLAGIALIEKNLS 566
+ ++G S S +E+ +L+ K K I + + + L+ L +I +
Sbjct: 714 VHLPTNGTSSSDPSRSDTPEELRKMLVTKMKLILSSGSDEECSICLDSLT-FPVI----T 768
Query: 567 QAVSLY-KEAMAVVEEHSEDFRLDPLLNIHLH-HNLTEILPMVANCATE 613
++ K + V + + PL ++H HNL E P C ++
Sbjct: 769 HCAHVFCKPCICQVIQREQPHAKCPLCRSNIHGHNLLECPPEELACDSD 817
Score = 46 (21.3 bits), Expect = 1.4e-27, Sum P(5) = 1.4e-27
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 15 PYQRRAAYWMVQRE 28
P+Q++A WM+ RE
Sbjct: 241 PHQKQALAWMIARE 254
>UNIPROTKB|E2R9I5 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:6596 KO:K15711 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:AAEX03013671 RefSeq:XP_534300.3 Ensembl:ENSCAFT00000013176
GeneID:477106 KEGG:cfa:477106 Uniprot:E2R9I5
Length = 1007
Score = 225 (84.3 bits), Expect = 3.1e-27, Sum P(6) = 3.1e-27
Identities = 51/135 (37%), Positives = 67/135 (49%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L I W R+ LDE + + A T+ L L A+ RW +TGTPIQ L DL+ LL FLK
Sbjct: 544 LHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPIQNSLKDLWSLLSFLKL 603
Query: 377 SPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCR---SSKVHVSDELQLPPQEECV 433
PF WW I+ P GD G + K I R +SK+ L+LP ++ +
Sbjct: 604 KPFLDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVFI 663
Query: 434 SWLTFSPIEEHFYQS 448
+T S E YQS
Sbjct: 664 QHITLSDEERKIYQS 678
Score = 90 (36.7 bits), Expect = 3.1e-27, Sum P(6) = 3.1e-27
Identities = 47/178 (26%), Positives = 74/178 (41%)
Query: 449 QHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCH 508
QH T R++ Q +K+ G A+ +N A A +L LL+LRQ CCH
Sbjct: 664 QHITLSDEERKIYQSVKNE-------GRATIGRYFNEGTVLAHYADVLGLLLRLRQICCH 716
Query: 509 PQV----GSSGLRSLQQSPLSMDEILMVLIGKTK-IEGEEALRKLVMALNGLAGIALIEK 563
+ GSS S +P +E+ LI K K I + + + L+ L + +I
Sbjct: 717 THLLTNAGSSSGPSGNDTP---EELRKKLIRKMKLILSSGSDEECAICLDSLT-VPVI-- 770
Query: 564 NLSQAVSLY-KEAMAVVEEHSEDFRLDPLLNIHLH-HNLTEILPMVANCATELSQNEQ 619
+ ++ K + V ++ + PL +H NL E P C TE N +
Sbjct: 771 --THCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHGDNLLECPPEELACDTEKKSNTE 826
Score = 88 (36.0 bits), Expect = 3.1e-27, Sum P(6) = 3.1e-27
Identities = 28/92 (30%), Positives = 40/92 (43%)
Query: 215 TDSPVATGATLIVCPAPILAQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIMDISEL 273
TD TLI+CP +L+ W + +H + L +Y G I D + L
Sbjct: 467 TDIEDRPRTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDR-------IRDPALL 519
Query: 274 VGADIVLTTYDVLKEDLSHDSDRHEGDRRFMR 305
DIVLTTY++L D D R++R
Sbjct: 520 SKQDIVLTTYNILTHDYGTKGDSPLHSIRWLR 551
Score = 84 (34.6 bits), Expect = 3.1e-27, Sum P(6) = 3.1e-27
Identities = 42/147 (28%), Positives = 64/147 (43%)
Query: 53 FLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACI---FAHRKPAS 109
F + + L+YN + + S V GGILAD+MGLGKT+ +A I F KP
Sbjct: 263 FWEQRNDLYYNTIT---NFSEKDRPENVHGGILADDMGLGKTLTAIAVILTNFHDGKPLP 319
Query: 110 DDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAWQHADCV 169
+ I + Q+ + VN + +K G + S K GL ++ C V
Sbjct: 320 VERIKKN---QMKKECNVNDQSMK-------LGGNNASEKADGL-IKGSRCSGEPSISDV 368
Query: 170 GYSPRGKKRRSTFELKKHTRKKDMTNI 196
+GKK+ + EL K+ T +
Sbjct: 369 ----KGKKKYTKSELSSSRPKRRKTAV 391
Score = 48 (22.0 bits), Expect = 3.1e-27, Sum P(6) = 3.1e-27
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 15 PYQRRAAYWMVQRE 28
P+Q++A WMV RE
Sbjct: 242 PHQKQALAWMVSRE 255
Score = 44 (20.5 bits), Expect = 1.3e-17, Sum P(4) = 1.3e-17
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 281 TTYDVLKEDLSHDSDRHE 298
T +D L EDL D HE
Sbjct: 212 TEFDKLFEDLKEDDKTHE 229
Score = 39 (18.8 bits), Expect = 3.1e-27, Sum P(6) = 3.1e-27
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 954 LHILEAMRKEYANARSLATAQ 974
+H L +RK+ N +SL +Q
Sbjct: 837 MHALIDLRKKNPNIKSLVVSQ 857
>UNIPROTKB|I3LM88 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016887 "ATPase activity" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:CU915669 EMBL:FP476099 Ensembl:ENSSSCT00000023239
Uniprot:I3LM88
Length = 1011
Score = 225 (84.3 bits), Expect = 5.0e-27, Sum P(6) = 5.0e-27
Identities = 51/135 (37%), Positives = 67/135 (49%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L I W R+ LDE + + A T+ L L A+ RW +TGTPIQ L DL+ LL FLK
Sbjct: 548 LHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPIQNSLKDLWSLLSFLKL 607
Query: 377 SPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCR---SSKVHVSDELQLPPQEECV 433
PF WW I+ P GD G + K I R +SK+ L+LP ++ +
Sbjct: 608 KPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVFI 667
Query: 434 SWLTFSPIEEHFYQS 448
+T S E YQS
Sbjct: 668 QHITLSDEERKIYQS 682
Score = 88 (36.0 bits), Expect = 5.0e-27, Sum P(6) = 5.0e-27
Identities = 27/92 (29%), Positives = 40/92 (43%)
Query: 215 TDSPVATGATLIVCPAPILAQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIMDISEL 273
TD TLI+CP +L+ W + +H + L +Y G + D + L
Sbjct: 471 TDVEERPRTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDR-------VRDPALL 523
Query: 274 VGADIVLTTYDVLKEDLSHDSDRHEGDRRFMR 305
DIVLTTY++L D D R++R
Sbjct: 524 SKQDIVLTTYNILTHDYGTKGDSPLHSIRWLR 555
Score = 88 (36.0 bits), Expect = 5.0e-27, Sum P(6) = 5.0e-27
Identities = 44/173 (25%), Positives = 73/173 (42%)
Query: 449 QHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCH 508
QH T R++ Q +K++ G A+ +N A A +L LL+LRQ CCH
Sbjct: 668 QHITLSDEERKIYQSVKND-------GRATIGRYFNEGTVLAHYADVLGLLLRLRQICCH 720
Query: 509 PQVGSSGLRSLQQSPLSM-DEILMVLIGKTK-IEGEEALRKLVMALNGLAGIALIEKNLS 566
+ ++ + S S +E+ LI K K I + + + L+ L + +I +
Sbjct: 721 THLLTNAVSSSGPSGNDTPEELRKKLIKKMKLILSSGSDEECAICLDSLT-VPVI----T 775
Query: 567 QAVSLY-KEAMAVVEEHSEDFRLDPLLNIHLH-HNLTEILPMVANCATELSQN 617
++ K + V ++ + PL +H NL E P C TE N
Sbjct: 776 HCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHGDNLLECPPEELACDTEKKSN 828
Score = 84 (34.6 bits), Expect = 5.0e-27, Sum P(6) = 5.0e-27
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 53 FLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAH 104
F + S L+YN + + S V GGILAD+MGLGKT+ +A I +
Sbjct: 263 FWEQRSDLYYNTIT---NFSEKDRPENVHGGILADDMGLGKTLTAIAVILTN 311
Score = 48 (22.0 bits), Expect = 5.0e-27, Sum P(6) = 5.0e-27
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 15 PYQRRAAYWMVQRE 28
P+Q++A WMV RE
Sbjct: 242 PHQKQALAWMVSRE 255
Score = 44 (20.5 bits), Expect = 2.1e-17, Sum P(4) = 2.1e-17
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 281 TTYDVLKEDLSHDSDRHE 298
T +D L EDL D HE
Sbjct: 212 TEFDKLFEDLKEDDKTHE 229
Score = 39 (18.8 bits), Expect = 5.0e-27, Sum P(6) = 5.0e-27
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 954 LHILEAMRKEYANARSLATAQ 974
+H L +RK+ N +SL +Q
Sbjct: 841 MHALIDLRKKNPNIKSLVVSQ 861
>UNIPROTKB|F1MLM2 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016887 "ATPase activity" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:DAAA02002705 EMBL:DAAA02002706 IPI:IPI00883352
Ensembl:ENSBTAT00000034508 Uniprot:F1MLM2
Length = 1009
Score = 219 (82.2 bits), Expect = 6.2e-26, Sum P(5) = 6.2e-26
Identities = 50/135 (37%), Positives = 66/135 (48%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L I W R+ LDE + + A T+ L L A+ RW +TGTPIQ L DL+ LL FLK
Sbjct: 546 LHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPIQNSLKDLWSLLSFLKL 605
Query: 377 SPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCR---SSKVHVSDELQLPPQEECV 433
PF WW I+ P GD + K I R +SK+ L+LP ++ +
Sbjct: 606 KPFVDREWWHRTIQRPVTMGDEAGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVFI 665
Query: 434 SWLTFSPIEEHFYQS 448
+T S E YQS
Sbjct: 666 QHITLSDEERKIYQS 680
Score = 88 (36.0 bits), Expect = 6.2e-26, Sum P(5) = 6.2e-26
Identities = 28/97 (28%), Positives = 42/97 (43%)
Query: 210 ELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIM 268
E + TD TLI+CP +L+ W + +H + L +Y G +
Sbjct: 464 ESSKKTDVEDKPRTTLIICPLSVLSNWMDQFGQHIKSDVHLNFYVYYGPDR-------VR 516
Query: 269 DISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMR 305
D + L DIVLTTY++L D D R++R
Sbjct: 517 DPTLLSKQDIVLTTYNILTHDYGTKGDSPLHSIRWLR 553
Score = 84 (34.6 bits), Expect = 6.2e-26, Sum P(5) = 6.2e-26
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 53 FLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAH 104
F + S L+YN + + S V GGILAD+MGLGKT+ +A I +
Sbjct: 263 FWEQRSDLYYNTIT---NFSEKDRPENVHGGILADDMGLGKTLTAIAVILTN 311
Score = 81 (33.6 bits), Expect = 6.2e-26, Sum P(5) = 6.2e-26
Identities = 43/172 (25%), Positives = 71/172 (41%)
Query: 449 QHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCH 508
QH T R++ Q +K+ G A+ +N A A +L LL+LRQ CCH
Sbjct: 666 QHITLSDEERKIYQSVKNE-------GKATIGRYFNEGTVLAHYADVLGLLLRLRQICCH 718
Query: 509 PQVGSSGLRSLQQSPLSM-DEILMVLIGKTK-IEGEEALRKLVMALNGLAGIALIEKNLS 566
+ ++ + S S +E+ LI K K I + + + L+ L +A + + +
Sbjct: 719 THLLANAVSSSGPSGNDTPEELRKKLIKKMKLILSSGSDEECAICLDSL--MAPVITHCA 776
Query: 567 QAVSLYKEAMAVVEEHSEDFRLDPLLNIHLH-HNLTEILPMVANCATELSQN 617
K + V ++ + PL +H +L E P C TE N
Sbjct: 777 HVFC--KPCICQVIQNEQPHAKCPLCRNDIHGDSLIECPPEELACNTEKKSN 826
Score = 70 (29.7 bits), Expect = 1.6e-24, Sum P(5) = 1.6e-24
Identities = 22/73 (30%), Positives = 35/73 (47%)
Query: 80 VFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVEC 139
V GGILAD+MGLGKT+ +A I + D + + + R+K+ +++
Sbjct: 287 VHGGILADDMGLGKTLTAIAVILTN----------------FHDGKSLPVERIKKNQLKK 330
Query: 140 ICGAVSESRKYKG 152
C ES + G
Sbjct: 331 ECNVYDESMELGG 343
Score = 50 (22.7 bits), Expect = 6.2e-26, Sum P(5) = 6.2e-26
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 15 PYQRRAAYWMVQREKGD 31
P+Q++A WMV RE +
Sbjct: 242 PHQKQALAWMVSRENSE 258
Score = 41 (19.5 bits), Expect = 6.6e-22, Sum P(5) = 6.6e-22
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 911 RRDVRETVVVSKSPSELEVILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYANARSL 970
R D+ ++ P EL K+ + + S + +H L +RK+ N +SL
Sbjct: 801 RNDIHGDSLIECPPEEL-----ACNTEKKSNMEWTSSSKINALMHALIDLRKKNPNIKSL 855
Query: 971 ATAQ 974
+Q
Sbjct: 856 VVSQ 859
>ASPGD|ASPL0000056426 [details] [associations]
symbol:AN0044 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009650 "UV
protection" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:BN001308 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000002 KO:K15505 RefSeq:XP_657648.1
ProteinModelPortal:Q5BHD6 STRING:Q5BHD6
EnsemblFungi:CADANIAT00002711 GeneID:2875817 KEGG:ani:AN0044.2
HOGENOM:HOG000040492 OMA:MDPWWSP OrthoDB:EOG4J40R2 Uniprot:Q5BHD6
Length = 1202
Score = 226 (84.6 bits), Expect = 1.7e-25, Sum P(3) = 1.7e-25
Identities = 56/196 (28%), Positives = 99/196 (50%)
Query: 224 TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG-ARNSSLSDTSIMDISELVGADIVLTT 282
TL+V P +LAQW+ E + +R GS+K +Y G +N +L + + +++LT+
Sbjct: 561 TLVVAPMSLLAQWEGEALKASRNGSMKVLMYYGNEKNVNLRE--MCSAGNAAAPNMILTS 618
Query: 283 YDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATE 342
Y V+ + H R P L + ++R+ LDEA ++++ +
Sbjct: 619 YGVVMSE-------H---RTHQALAPGTSWTPGNLFSVDFFRVILDEAHIIKNRRSKTAR 668
Query: 343 MALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDV-GAM 401
L A HRW +TGTPI +L+DL+ L+RFL+ P++ +W I P+E+ +V A+
Sbjct: 669 ACYDLKATHRWVLTGTPIVNRLEDLFSLVRFLRVEPWNNFSFWKTFITAPFESKEVVRAI 728
Query: 402 EFTHKFFKEIMCRSSK 417
+ ++ R +K
Sbjct: 729 SVVQTVLEPLVLRRTK 744
Score = 151 (58.2 bits), Expect = 1.7e-25, Sum P(3) = 1.7e-25
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 14 RPYQRRAAYWMVQREKGDXXXXXXXXX---XXXXXPLC----MPMDFLDTYSTLFYNPFS 66
R YQ++A YWM+ +EK PL + ++ + + NP+S
Sbjct: 437 RKYQKQALYWMLSKEKDKKSGREVSIHPLWEEYDWPLKDVDDKDLPIIEGINHFYVNPYS 496
Query: 67 GSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHR 105
G LSL + GGILADEMGLGKT+E+L+ + +HR
Sbjct: 497 GELSLDFPAQEQHCLGGILADEMGLGKTIEMLSLVHSHR 535
Score = 57 (25.1 bits), Expect = 1.7e-25, Sum P(3) = 1.7e-25
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 499 LLKLRQACCHP 509
LL+LRQ CCHP
Sbjct: 808 LLRLRQTCCHP 818
Score = 38 (18.4 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 11/48 (22%), Positives = 17/48 (35%)
Query: 419 HVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKD 466
H ++Q EC I+ H C G ++ IQ +D
Sbjct: 879 HALRQIQTESAGECPICSEEPMIDPAVTACWHSACKGCLKDYIQHQRD 926
>WB|WBGene00010061 [details] [associations]
symbol:F54E12.2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:Z73102 EMBL:Z82271
GeneTree:ENSGT00700000104545 KO:K15173 PIR:T18666
RefSeq:NP_502137.1 ProteinModelPortal:G5EEW5 SMR:G5EEW5
IntAct:G5EEW5 EnsemblMetazoa:F54E12.2.1 EnsemblMetazoa:F54E12.2.2
GeneID:178054 KEGG:cel:CELE_F54E12.2 CTD:178054 WormBase:F54E12.2
OMA:QTCAVTN NextBio:899526 Uniprot:G5EEW5
Length = 1091
Score = 297 (109.6 bits), Expect = 1.8e-25, Sum P(2) = 1.8e-25
Identities = 95/326 (29%), Positives = 157/326 (48%)
Query: 219 VATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADI 278
+ + TLIV PA ++ QWDAEI R L T ++ G + D +D L D+
Sbjct: 543 IPSNGTLIVAPASLIHQWDAEIDRRLDDSVLSTYMFHGTKKQR--D---IDARRLARYDV 597
Query: 279 VLTTYDVLKEDL---------SHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDE 329
V+TT++++ +L + DS E D ++ ++L +I W R+ LDE
Sbjct: 598 VITTFNLIANELIEKIRTKSKADDSSDGESDSNHTGIRRAVGKDDSVLAQICWSRVILDE 657
Query: 330 AQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVI 389
A +++ + A++ RL A RWC++GTPI L DLY L+RFL+ PFS ++W E I
Sbjct: 658 AHTIKNRQSLASKAVCRLSAFSRWCLSGTPIHNNLWDLYSLVRFLRIRPFSDDKYWKESI 717
Query: 390 RDPYENGDVGAMEFTHKFFKEIMCRSSKVH---VSDE--LQLPPQEECVSWLTFSPIEEH 444
P + + A + + K ++ R +K V+++ +QLPP+ V L E
Sbjct: 718 M-PMK--PIMA-DRVNLLTKNLLLRRTKDQTCAVTNQKLVQLPPKNVEVHELELDGDEAQ 773
Query: 445 FYQSQHETCVGYAREVIQRLKD--N---ILKRN----VPGHASSDALYNP--IITHAEAA 493
Y+ E + ++++Q D N I +RN G + + P + +
Sbjct: 774 AYEIMMEAAKKFVKKLLQDSNDMKNHGFIPRRNRRAGKEGEVQNPFNFGPRDLAAGSNFE 833
Query: 494 KL---LNSLLKLRQACCHPQVGSSGL 516
K+ L LL+LRQAC H + +G+
Sbjct: 834 KMSCVLMLLLRLRQACVHFNITKTGV 859
Score = 84 (34.6 bits), Expect = 1.8e-25, Sum P(2) = 1.8e-25
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 82 GGILADEMGLGKTVELLACIFAHRKPA 108
GGILAD+MGLGKT+ +++ I AH+K A
Sbjct: 492 GGILADDMGLGKTLSMISLI-AHQKAA 517
>UNIPROTKB|Q14527 [details] [associations]
symbol:HLTF "Helicase-like transcription factor"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
UniPathway:UPA00143 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0016874
EMBL:CH471052 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 GO:GO:0016887 GO:GO:0016567 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:L34673
EMBL:Z46606 EMBL:AJ418064 EMBL:BC044659 EMBL:S64671 IPI:IPI00339381
IPI:IPI00759790 PIR:S49618 RefSeq:NP_003062.2 RefSeq:NP_620636.1
UniGene:Hs.3068 PDB:2L1I PDBsum:2L1I ProteinModelPortal:Q14527
SMR:Q14527 DIP:DIP-29828N IntAct:Q14527 MINT:MINT-1639589
STRING:Q14527 PhosphoSite:Q14527 DMDM:60390864 PaxDb:Q14527
PRIDE:Q14527 DNASU:6596 Ensembl:ENST00000310053
Ensembl:ENST00000392912 Ensembl:ENST00000465259
Ensembl:ENST00000494055 GeneID:6596 KEGG:hsa:6596 UCSC:uc003ewq.1
CTD:6596 GeneCards:GC03M148747 H-InvDB:HIX0024319 HGNC:HGNC:11099
HPA:HPA015284 MIM:603257 neXtProt:NX_Q14527 PharmGKB:PA35949
HOVERGEN:HBG079192 InParanoid:Q14527 KO:K15711 OMA:SNWIDQF
PhylomeDB:Q14527 GenomeRNAi:6596 NextBio:25655 ArrayExpress:Q14527
Bgee:Q14527 CleanEx:HS_HLTF Genevestigator:Q14527
GermOnline:ENSG00000071794 Uniprot:Q14527
Length = 1009
Score = 222 (83.2 bits), Expect = 2.6e-25, Sum P(6) = 2.6e-25
Identities = 50/135 (37%), Positives = 67/135 (49%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L I W R+ LDE + + A T+ L L ++ RW +TGTPIQ L DL+ LL FLK
Sbjct: 546 LHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLSFLKL 605
Query: 377 SPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCR---SSKVHVSDELQLPPQEECV 433
PF WW I+ P GD G + K I R +SK+ L+LP ++ +
Sbjct: 606 KPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVFI 665
Query: 434 SWLTFSPIEEHFYQS 448
+T S E YQS
Sbjct: 666 QHITLSDEERKIYQS 680
Score = 85 (35.0 bits), Expect = 2.6e-25, Sum P(6) = 2.6e-25
Identities = 27/92 (29%), Positives = 40/92 (43%)
Query: 215 TDSPVATGATLIVCPAPILAQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIMDISEL 273
TD TLI+CP +L+ W + +H + L +Y G I + + L
Sbjct: 469 TDVEERPRTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDR-------IREPALL 521
Query: 274 VGADIVLTTYDVLKEDLSHDSDRHEGDRRFMR 305
DIVLTTY++L D D R++R
Sbjct: 522 SKQDIVLTTYNILTHDYGTKGDSPLHSIRWLR 553
Score = 81 (33.6 bits), Expect = 2.6e-25, Sum P(6) = 2.6e-25
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 53 FLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAH 104
F + + L+YN + + S V GGILAD+MGLGKT+ +A I +
Sbjct: 263 FWEQRNDLYYNTIT---NFSEKDRPENVHGGILADDMGLGKTLTAIAVILTN 311
Score = 74 (31.1 bits), Expect = 2.6e-25, Sum P(6) = 2.6e-25
Identities = 27/92 (29%), Positives = 42/92 (45%)
Query: 449 QHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCH 508
QH T R++ Q +K+ G A+ +N A A +L LL+LRQ CCH
Sbjct: 666 QHITLSDEERKIYQSVKNE-------GRATIGRYFNEGTVLAHYADVLGLLLRLRQICCH 718
Query: 509 PQVGSSGLRSLQQSPLSM-DEILMVLIGKTKI 539
+ ++ + S S +E+ LI K K+
Sbjct: 719 TYLLTNAVSSNGPSGNDTPEELRKKLIRKMKL 750
Score = 48 (22.0 bits), Expect = 2.6e-25, Sum P(6) = 2.6e-25
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 15 PYQRRAAYWMVQRE 28
P+Q++A WMV RE
Sbjct: 242 PHQKQALAWMVSRE 255
Score = 45 (20.9 bits), Expect = 2.6e-25, Sum P(6) = 2.6e-25
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 911 RRDVRETVVVSKSPSELEVILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYANARSL 970
R D+ E ++ P EL + K+ + + S + +H L +RK+ N +SL
Sbjct: 801 RNDIHEDNLLECPPEEL-----ARDSEKKSDMEWTSSSKINALMHALTDLRKKNPNIKSL 855
Query: 971 ATAQ 974
+Q
Sbjct: 856 VVSQ 859
Score = 44 (20.5 bits), Expect = 2.7e-16, Sum P(4) = 2.7e-16
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 281 TTYDVLKEDLSHDSDRHE 298
T +D L EDL D HE
Sbjct: 212 TEFDKLFEDLKEDDKTHE 229
Score = 38 (18.4 bits), Expect = 9.9e-22, Sum P(6) = 9.9e-22
Identities = 27/127 (21%), Positives = 48/127 (37%)
Query: 720 RKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKSRALRTA 779
RK ++Q D+ K Y + E A + F+ + + G L + R +
Sbjct: 661 RKVFIQHITLSDEERKIYQSVKNEG--RATIGRYFNEGTVLAHYADVLGLLLRLRQI-CC 717
Query: 780 SRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGD 839
Y + ++ + S D E RK L+ ++ I + +E+ C IC
Sbjct: 718 HTYLLTNAVSSNGPSGNDTPEELRKKLIRKMKLI---LSSGSDEE------CAICLDSLT 768
Query: 840 GPICVHC 846
P+ HC
Sbjct: 769 VPVITHC 775
Score = 37 (18.1 bits), Expect = 5.0e-21, Sum P(5) = 5.0e-21
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 889 YWYLSQPNKNSTSSSVGNEEIKRRDVRETVVVSKSPSELE 928
Y + + N S + EE++++ +R+ ++ S S+ E
Sbjct: 720 YLLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEE 759
>ZFIN|ZDB-GENE-030131-3306 [details] [associations]
symbol:hltf "helicase-like transcription factor"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518
ZFIN:ZDB-GENE-030131-3306 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:6596 HOVERGEN:HBG079192 KO:K15711 OMA:SNWIDQF
GeneTree:ENSGT00700000104586 HOGENOM:HOG000172619 OrthoDB:EOG47SSD6
EMBL:CR788256 IPI:IPI00500566 RefSeq:XP_693071.2 UniGene:Dr.105912
Ensembl:ENSDART00000099350 Ensembl:ENSDART00000132050 GeneID:564651
KEGG:dre:564651 NextBio:20885486 Uniprot:B0V118
Length = 942
Score = 213 (80.0 bits), Expect = 7.8e-25, Sum P(3) = 7.8e-25
Identities = 47/134 (35%), Positives = 70/134 (52%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L + W R+ LDE +V + A ++ L L ++ RW ++GTPIQ L DL+ LL FLK
Sbjct: 486 LHNVKWLRVVLDEGHVVRNPNALQSKAVLELQSERRWILSGTPIQNSLKDLFMLLSFLKL 545
Query: 377 SPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCR---SSKVHVSDELQLPPQEECV 433
PF + WW +I+ P GD ++ K I R +SKV +QLP + V
Sbjct: 546 KPFDVKEWWSRIIQRPVTMGDRVGLKNLQALVKGITLRRTKNSKVGGRTLVQLPERRVFV 605
Query: 434 SWLTFSPIEEHFYQ 447
++T S +E Y+
Sbjct: 606 QYVTLSGMEREKYE 619
Score = 128 (50.1 bits), Expect = 7.8e-25, Sum P(3) = 7.8e-25
Identities = 67/233 (28%), Positives = 107/233 (45%)
Query: 80 VFGGILADEMGLGKTVELLACI---FAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRER 136
V GGILAD+MGLGKT+ +A I F + KP + + Q + K +
Sbjct: 273 VLGGILADDMGLGKTLTTIALIVSNFHNGKPLPLEKCKGPSMPSAKRKQATS----KEKG 328
Query: 137 VECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNI 196
V+ ES++ GL + H D V + KK ++T + +T+K +
Sbjct: 329 VDS-----EESQESMGLSPLKRL-----HDDTVRENGPQKKTKTTKKKSANTKK---AVV 375
Query: 197 VVRDGEHICQW-CD--ELI--------EATDSPVATG----ATLIVCPAPILAQWDAEIT 241
++ D E C +++ + S ++ G ATLIVCP +L+ W +
Sbjct: 376 LLDDVEFAAALECSSSQVVPSKKCVKKSSVPSEISAGSVARATLIVCPLSVLSNWLDQFE 435
Query: 242 RHTRPG-SLKTCIYEGA-RNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSH 292
+H R ++K +Y G+ RN S+S +SE D+VLTTY+VL D +
Sbjct: 436 QHIRTDVTVKVYLYYGSERNRSVSL-----LSE---QDVVLTTYNVLSSDFGN 480
Score = 83 (34.3 bits), Expect = 7.8e-25, Sum P(3) = 7.8e-25
Identities = 25/84 (29%), Positives = 40/84 (47%)
Query: 449 QHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCH 508
Q+ T G RE +R+K +N+ G + + A A +L L++LRQ CCH
Sbjct: 606 QYVTLSGMEREKYERVKGE--GKNIVGRYFQEGTFM-----ANYADVLTILMRLRQCCCH 658
Query: 509 PQ-VGSSGLRSLQQSPLSMDEILM 531
P VG+ + +P + E L+
Sbjct: 659 PSLVGNYTAADVPGTPSELRERLI 682
>POMBASE|SPAC13G6.01c [details] [associations]
symbol:rad8 "ubiquitin-protein ligase E3 Rad8"
species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006281
"DNA repair" evidence=IGI;IMP] [GO:0006289 "nucleotide-excision
repair" evidence=IMP] [GO:0006301 "postreplication repair"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009650 "UV protection" evidence=IMP] [GO:0016567 "protein
ubiquitination" evidence=NAS] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 PomBase:SPAC13G6.01c Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386 GO:GO:0004842
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006289 GO:GO:0006301 GO:GO:0009650 KO:K15505
HOGENOM:HOG000040492 OrthoDB:EOG4J40R2 EMBL:X74615 PIR:S41478
RefSeq:XP_001713034.1 ProteinModelPortal:P36607 STRING:P36607
PRIDE:P36607 EnsemblFungi:SPAC13G6.01c.1 GeneID:3361391
KEGG:spo:SPAC13G6.01c OMA:PCAHRMC NextBio:20811441 Uniprot:P36607
Length = 1133
Score = 188 (71.2 bits), Expect = 2.5e-24, Sum P(4) = 2.5e-24
Identities = 41/138 (29%), Positives = 70/138 (50%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L + W+R+ LDE + + + + + +++RW ITGTPI KLDDLY L++F++
Sbjct: 645 LFSVHWFRVVLDEGHNIRNRESKTAKACHSISSQNRWVITGTPIVNKLDDLYSLIKFMRY 704
Query: 377 SPFSISRWWIEVIRDPYENGDV-GAMEFTHKFFKEIMCRSSKVHVSDE-----LQLPPQE 430
P+ +W + PY++ DV A+ + ++ R +K D + LPP+
Sbjct: 705 EPWCNYTYWQTFVSLPYQSKDVLKALNVVQSILEFLVLRRTK-ETKDRNGNSIVTLPPKT 763
Query: 431 ECVSWLTFSPIEEHFYQS 448
+ +L FS E Y S
Sbjct: 764 VKIEYLDFSDSERKIYDS 781
Score = 127 (49.8 bits), Expect = 2.5e-24, Sum P(4) = 2.5e-24
Identities = 40/111 (36%), Positives = 54/111 (48%)
Query: 14 RPYQRRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMD-----FL----DTYSTLFY-N 63
R YQ++A YWM +E+G P D F D +T FY N
Sbjct: 446 REYQKQALYWMCCKEEGVQSDGSAPKLHPLWSRFRFPKDSEFPEFFKCSSDDDNTHFYVN 505
Query: 64 PFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPA-SDDSI 113
++G ++ + Y GGILADEMGLGKT+E+L+ I H +P S D I
Sbjct: 506 LYTGETTMLFPNSMPYHRGGILADEMGLGKTIEVLSLI--HSRPCFSTDEI 554
Score = 98 (39.6 bits), Expect = 2.5e-24, Sum P(4) = 2.5e-24
Identities = 28/95 (29%), Positives = 46/95 (48%)
Query: 205 CQWCDELIEA-----TDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARN 259
C DE+ EA PVA+ TL+V P +L QW +E + ++ ++ IY G+
Sbjct: 548 CFSTDEIPEAFRHSKPSLPVASRTTLVVAPMSLLDQWHSEACKVSQGTKFRSMIYYGSEK 607
Query: 260 SSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDS 294
+ ++D S I++T+Y VL + S S
Sbjct: 608 PLDLKSCVIDTS--TAPLIIITSYGVLLSEFSQQS 640
Score = 56 (24.8 bits), Expect = 2.5e-24, Sum P(4) = 2.5e-24
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 495 LLNSLLKLRQACCHP 509
+L LL+LRQACC P
Sbjct: 806 ILGLLLRLRQACCDP 820
>DICTYBASE|DDB_G0272082 [details] [associations]
symbol:DDB_G0272082 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 dictyBase:DDB_G0272082
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AAFI02000007 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_001732968.1 EnsemblProtists:DDB0233429 GeneID:8618298
KEGG:ddi:DDB_G0272082 Uniprot:B0G105
Length = 1838
Score = 206 (77.6 bits), Expect = 3.4e-24, Sum P(6) = 3.4e-24
Identities = 46/134 (34%), Positives = 69/134 (51%)
Query: 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
W+R+ LDEA ++ + ++ L + RWC+TGTPIQ KLDDL+ LL FL+ PF
Sbjct: 1122 WFRVVLDEAHTIKERSTRTSKATYALESIIRWCVTGTPIQNKLDDLFSLLHFLRVEPFHN 1181
Query: 382 SRWWIEVIRDPYE-NGDVGAMEFTHKFFKEIMCR--SSKVHVSDELQLPPQEECVSWLTF 438
WW + I P + D+G K ++ R K++ + L+LP + + F
Sbjct: 1182 YSWWNQYILKPSKLKDDIGFSRLRVLLSKILLRRLKDQKINNTPILKLPDRTIMIKRDIF 1241
Query: 439 SPIEEHFYQSQHET 452
S EE YQ +T
Sbjct: 1242 SEEEEQIYQDLWKT 1255
Score = 114 (45.2 bits), Expect = 3.4e-24, Sum P(6) = 3.4e-24
Identities = 31/81 (38%), Positives = 41/81 (50%)
Query: 215 TDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELV 274
T+ + TLIVCP +L QW +EI +T P SL IY G + D S L+
Sbjct: 935 TNQVQQSNCTLIVCPVSVLQQWHSEIINNTNP-SLNVYIYHGPNRNR-------DRSFLM 986
Query: 275 GADIVLTTYDVLKEDLSHDSD 295
DI+LTTY L + H+ D
Sbjct: 987 KHDIILTTYTTLVAE--HNDD 1005
Score = 89 (36.4 bits), Expect = 3.4e-24, Sum P(6) = 3.4e-24
Identities = 15/28 (53%), Positives = 24/28 (85%)
Query: 78 SYVFGGILADEMGLGKTVELLACIFAHR 105
S+V GG+L D+MG+GKT+E++A I A++
Sbjct: 880 SFVKGGLLCDDMGMGKTIEIIATILANK 907
Score = 55 (24.4 bits), Expect = 3.4e-24, Sum P(6) = 3.4e-24
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 14 RPYQRRAAYWMVQRE 28
R YQR+A YWM RE
Sbjct: 846 RTYQRQALYWMHHRE 860
Score = 52 (23.4 bits), Expect = 3.4e-24, Sum P(6) = 3.4e-24
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 493 AKLLNSLLKLRQACCHP 509
A +L LL+LRQ C HP
Sbjct: 1274 AHVLEMLLRLRQVCDHP 1290
Score = 48 (22.0 bits), Expect = 3.4e-24, Sum P(6) = 3.4e-24
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 856 EARLFRLKKSQGDIASAEEAVDLQKKNSSL 885
E R+ L+KS+ D+A +EA++ KK + +
Sbjct: 1802 EERILNLQKSKKDLA--KEALNTMKKQTRI 1829
Score = 39 (18.8 bits), Expect = 2.6e-23, Sum P(6) = 2.6e-23
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 928 EVILGVIKNYCKTQLGREAISASSKQLHILE 958
E IL + K+ K L +EA++ KQ I E
Sbjct: 1803 ERILNLQKS--KKDLAKEALNTMKKQTRIEE 1831
>UNIPROTKB|F1N2E8 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0008270 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00700000104545 OMA:WCGSIPW
EMBL:DAAA02007409 IPI:IPI00710264 UniGene:Bt.10162 PRIDE:F1N2E8
Ensembl:ENSBTAT00000033711 Uniprot:F1N2E8
Length = 1163
Score = 283 (104.7 bits), Expect = 4.9e-23, Sum P(3) = 4.9e-23
Identities = 113/396 (28%), Positives = 174/396 (43%)
Query: 212 IEATDSPVATG-ATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDI 270
+ DS T TLI+CPA ++ W E+ +H L+ C+Y G + +
Sbjct: 632 LSKNDSSEFTSHGTLIICPASLIHHWKNEVEKHVSHNRLRVCLYHGPNRNQHAKV----- 686
Query: 271 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEA 330
L DIV+TTY +L +++ D + + L R+ W R+ LDEA
Sbjct: 687 --LSTYDIVITTYSLLAKEIPTAKQ----DEQIPGANPSVEGTSSPLLRVVWARLILDEA 740
Query: 331 QMVESNAAAATEMAL-RLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVI 389
V+ N T MA+ +L A+ RW +TGTPIQ L D+Y LL+FL+ SPF + W
Sbjct: 741 HNVK-NPRVQTSMAVCKLQAQARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFKLW---- 795
Query: 390 RDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSD----------------ELQLPPQEECV 433
+ +NG E + + ++ R +K + L+L EE V
Sbjct: 796 KSQVDNGSKKGGERLNILTRSLLLRRTKDQLDSTGKPLVVLPHRKFQLHHLKLSEDEETV 855
Query: 434 SWLTF--SPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHA- 490
+ F S + +Y +HE+ G ++ R DN R SS + + A
Sbjct: 856 YSVLFARSRLALQYYLKRHES--GSSQS--GRSPDNPFNRVAQEFGSSGPGPSTAGSQAT 911
Query: 491 -EAAKLLNSLLKLRQACCHPQVGSSGL--RSLQQS--PLSMDEILMVLIGKTKIEGEEAL 545
A +L+ LL+LRQ CCH + S L L+ LS++E L L T E ++
Sbjct: 912 SSAVHILSQLLRLRQCCCHLSLLKSALDPTELKSEGLALSLEEQLSAL---TLSEFHDSE 968
Query: 546 RKLVMALNGLA-GIALIE-KNLSQAVS-LYKEAMAV 578
++LNG + + L + K S +S L E AV
Sbjct: 969 PSASVSLNGKSFKVELFDDKRESTKISSLLAELEAV 1004
Score = 84 (34.6 bits), Expect = 4.9e-23, Sum P(3) = 4.9e-23
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 82 GGILADEMGLGKTVELLACIFAHRKPASDD 111
GGILAD+MGLGKT+ ++A I +K D
Sbjct: 595 GGILADDMGLGKTLTMIALILTQKKSKEKD 624
Score = 40 (19.1 bits), Expect = 4.9e-23, Sum P(3) = 4.9e-23
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 15 PYQRRAAYWMVQRE 28
P+Q++A W++ RE
Sbjct: 576 PHQKQALAWLLWRE 589
>TAIR|locus:2008096 [details] [associations]
symbol:AT1G50410 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] [GO:0006816 "calcium ion transport" evidence=RCA]
[GO:0010413 "glucuronoxylan metabolic process" evidence=RCA]
[GO:0045492 "xylan biosynthetic process" evidence=RCA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000241058 EMBL:AY039939 EMBL:AY142669
IPI:IPI00533542 RefSeq:NP_564568.1 UniGene:At.15795
ProteinModelPortal:Q94BR5 SMR:Q94BR5 PaxDb:Q94BR5 PRIDE:Q94BR5
EnsemblPlants:AT1G50410.1 GeneID:841463 KEGG:ath:AT1G50410
TAIR:At1g50410 InParanoid:Q94BR5 OMA:EVRVMIM PhylomeDB:Q94BR5
ProtClustDB:CLSN2684720 ArrayExpress:Q94BR5 Genevestigator:Q94BR5
Uniprot:Q94BR5
Length = 981
Score = 211 (79.3 bits), Expect = 3.9e-22, Sum P(5) = 3.9e-22
Identities = 44/133 (33%), Positives = 70/133 (52%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L ++ W+R+ LDEAQ ++++ L AK RWC++GTPIQ +DDLY RFLK
Sbjct: 466 LAKVGWFRVVLDEAQTIKNHRTQVARACCGLRAKRRWCLSGTPIQNTIDDLYSYFRFLKY 525
Query: 377 SPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDE---LQLPPQEECV 433
P+++ + + I+ P + + + IM R +K + D + LPP+ +
Sbjct: 526 DPYAVYKSFCHQIKGPISRNSLQGYKKLQAVLRAIMLRRTKGTLLDGQPIINLPPKTINL 585
Query: 434 SWLTFSPIEEHFY 446
S + FS E FY
Sbjct: 586 SQVDFSVEERSFY 598
Score = 96 (38.9 bits), Expect = 3.9e-22, Sum P(5) = 3.9e-22
Identities = 28/86 (32%), Positives = 39/86 (45%)
Query: 220 ATGATLIVCPAPILAQWDAEITRH-TRPGSLKTCIYEGARNSSLSDTSIMDISELVGADI 278
A G TLIVCPA ++ QW E+ T L IY G + D EL D+
Sbjct: 342 AAG-TLIVCPASVVRQWARELDEKVTDEAKLSVLIYHGGNRTK-------DPIELAKYDV 393
Query: 279 VLTTYDVLKEDLSHDS--DRHEGDRR 302
V+TTY ++ ++ D E D +
Sbjct: 394 VMTTYAIVSNEVPKQPLVDDDENDEK 419
Score = 73 (30.8 bits), Expect = 3.9e-22, Sum P(5) = 3.9e-22
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 77 SSYVFGGILADEMGLGKTVELLACI 101
S + GGILAD+ GLGKTV +A I
Sbjct: 244 SLHCMGGILADDQGLGKTVSTIALI 268
Score = 61 (26.5 bits), Expect = 3.9e-22, Sum P(5) = 3.9e-22
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 493 AKLLNSLLKLRQACCHPQV 511
A +L LL+LRQAC HPQ+
Sbjct: 623 ANILLMLLRLRQACDHPQL 641
Score = 43 (20.2 bits), Expect = 3.9e-22, Sum P(5) = 3.9e-22
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 985 RMATTRLHLKEDDNDTSVDALSPDELASASVTNSSEKFISMTLLSQVKGKLRYLKVS 1041
+MA++ +DD+D D ++ E S T S+ I + SQ G L +++S
Sbjct: 790 QMASSSQQPNDDDDDDD-DDVTIVEKTSLKSTPSNGGPIKTIIFSQWTGMLDLVELS 845
>ZFIN|ZDB-GENE-110411-73 [details] [associations]
symbol:si:ch1073-303l5.1 "si:ch1073-303l5.1"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-110411-73 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104545 EMBL:CABZ01070143
EMBL:CU693447 IPI:IPI00993890 Ensembl:ENSDART00000126063
ArrayExpress:E7FD29 Bgee:E7FD29 Uniprot:E7FD29
Length = 1149
Score = 271 (100.5 bits), Expect = 5.7e-22, Sum P(3) = 5.7e-22
Identities = 101/364 (27%), Positives = 165/364 (45%)
Query: 217 SPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGA 276
S VA+ TLI+CPA ++ W EI + + L +Y G N S S L
Sbjct: 620 SIVASQGTLIICPASLVHHWKKEIDKRVKSSRLTVYLYHGP-NRQRS------ASVLAEH 672
Query: 277 DIVLTTYDVLKEDL---SHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 333
D+V+TTY ++ +++ D+++ D + +P LL R+ W R+ LDEA +
Sbjct: 673 DVVITTYSLVSKEIPVQKEDAEKPSKDSDHVASD-----LPPLL-RVAWARVILDEAHSI 726
Query: 334 ESNAAAATEMAL-RLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDP 392
+ N T MA+ +L A+ RW +TGTPIQ L D+Y LL+FL+ SPF + W +
Sbjct: 727 K-NPKVQTSMAVCKLRARSRWAVTGTPIQNNLLDMYSLLKFLRCSPFDEYKLW----KAQ 781
Query: 393 YENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLP----PQEEC-VSWLTFSPIEEHFYQ 447
+NG E + + ++ R +K + D P P C + L S E+ Y
Sbjct: 782 VDNGSKRGGERLNILTRALLLRRTKDQL-DATGKPLVSLPDRTCEIHRLKLSEDEQAVYD 840
Query: 448 SQHETCVGYAREVIQRLKDNILKR---NVP---------GHASSDALYNPIITHAEAA-K 494
+ ++R +D K+ + P G + D+ + A +
Sbjct: 841 VVFAQSRSTLQNYLKRHEDGNTKKGDTSNPFEKVVAREFGMSQQDSQSSSQQPQASSTIH 900
Query: 495 LLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVL----IGKTKIEGEEALRKLVM 550
+L+ LL+LRQ CCH + ++L QS L D + + L + E ++ K +
Sbjct: 901 ILSLLLRLRQCCCHLSLLK---KTLDQSELQGDGVALSLEEQLCALSLSEPSDSENKDTV 957
Query: 551 ALNG 554
+LNG
Sbjct: 958 SLNG 961
Score = 82 (33.9 bits), Expect = 5.7e-22, Sum P(3) = 5.7e-22
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 82 GGILADEMGLGKTVELLACIFAHRK 106
GGILAD+MGLGKT+ ++A I + +K
Sbjct: 581 GGILADDMGLGKTLTMIALILSQKK 605
Score = 44 (20.5 bits), Expect = 5.7e-22, Sum P(3) = 5.7e-22
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 15 PYQRRAAYWMVQRE 28
P+Q+RA W++ RE
Sbjct: 562 PHQKRALTWLLWRE 575
>UNIPROTKB|E2RGF7 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0008270 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:AAEX03011013
Ensembl:ENSCAFT00000015640 Uniprot:E2RGF7
Length = 1150
Score = 277 (102.6 bits), Expect = 6.7e-22, Sum P(3) = 6.7e-22
Identities = 96/318 (30%), Positives = 143/318 (44%)
Query: 224 TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTY 283
TLI+CPA ++ W E+ + +L+ C+Y G + L DIV+TTY
Sbjct: 628 TLIICPASLIHHWKNEVMKRVSSNTLRVCLYHGPNRDQRAKV-------LSTYDIVITTY 680
Query: 284 DVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEM 343
++L +++ + + EG + T L RI W RI LDEA V N T M
Sbjct: 681 NLLAKEIP--TQKEEGAIPGANPSMGKDIAKTPLLRIVWARIILDEAHCVR-NPRVQTSM 737
Query: 344 AL-RLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAME 402
A+ +L A RW +TGTPIQ L D+Y LL+FL+ SPF + W + +NG E
Sbjct: 738 AVCKLQAHARWAVTGTPIQNTLLDMYSLLKFLRCSPFDDFQLW----KSQVDNGSKKGGE 793
Query: 403 FTHKFFKEIMCRSSKVHVSDE----LQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAR 458
K ++ R +K + + LP ++ V L S EE+ Y + +R
Sbjct: 794 RLSILTKSLLLRRTKDQLDSTGKPLVMLPQRQFHVHRLKLSEDEENVYS----VLLAKSR 849
Query: 459 EVIQR-LK------DNILKRNVPGHASSDALYN-------PIITHAEAAK------LLNS 498
+Q LK N+ R+ PG+ S P + A++ + LL
Sbjct: 850 SALQSYLKAGREGGGNLSGRS-PGNPFSKVAQEFGSSRPGPCVA-ADSQRPGTPHLLLTR 907
Query: 499 LLKLRQACCHPQVGSSGL 516
LL+LRQ CCH + S L
Sbjct: 908 LLRLRQCCCHLSLLKSAL 925
Score = 76 (31.8 bits), Expect = 6.7e-22, Sum P(3) = 6.7e-22
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 82 GGILADEMGLGKTVELLACIFAHR 105
GGILAD+MGLGKT+ ++A I +
Sbjct: 575 GGILADDMGLGKTLTMIALILTQK 598
Score = 43 (20.2 bits), Expect = 6.7e-22, Sum P(3) = 6.7e-22
Identities = 19/75 (25%), Positives = 39/75 (52%)
Query: 859 LFRLKKSQGDIASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSV-GNEEIKRR-DVRE 916
L L+ +G+ S +++V + + S L W+L + + T +++ G+ K+R D+ E
Sbjct: 985 LVELEAIRGNSGS-QKSVIVSQWTSMLQIVAWHLKK--RGLTYATINGSVRPKQRMDLVE 1041
Query: 917 TVVVSKSPSELEVIL 931
S+SP + + L
Sbjct: 1042 AFNSSRSPQVMLISL 1056
>TAIR|locus:2089318 [details] [associations]
symbol:AT3G16600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
Pfam:PF00097 Prosite:PS00518 GO:GO:0005524 EMBL:CP002686
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:QACNHPQ
IPI:IPI00536054 RefSeq:NP_188282.1 UniGene:At.53337
ProteinModelPortal:F4J2R0 PRIDE:F4J2R0 EnsemblPlants:AT3G16600.1
GeneID:820911 KEGG:ath:AT3G16600 Uniprot:F4J2R0
Length = 638
Score = 244 (91.0 bits), Expect = 6.9e-22, Sum P(4) = 6.9e-22
Identities = 57/202 (28%), Positives = 101/202 (50%)
Query: 221 TGATLIVCPAPILAQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIMDISELVGADIV 279
+G TLIVCPA ++ QW E+ L ++ G+ + D +E+ D+V
Sbjct: 114 SGGTLIVCPASVVKQWAREVKEKVSDEHKLSVLVHHGSHRTK-------DPTEIAIYDVV 166
Query: 280 LTTYDVLKEDLSHDS--DRHEGDRRFMRFQKRYPVIPTL--LTRIFWWRICLDEAQMVES 335
+TTY ++ ++ + +R++ R + P + L R+ W R+ LDEA +++
Sbjct: 167 MTTYAIVTNEVPQNPMLNRYDSMRGRESLDGSSLIQPHVGALGRVRWLRVVLDEAHTIKN 226
Query: 336 NAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYEN 395
+ + L AK RWC+TGTPI+ K+DDLY RFL+ P+++ + + I+ P +
Sbjct: 227 HRTLIAKACFSLRAKRRWCLTGTPIKNKVDDLYSYFRFLRYHPYAMCNSFHQRIKAPIDK 286
Query: 396 GDVGAMEFTHKFFKEIMCRSSK 417
+ + + IM R +K
Sbjct: 287 KPLHGYKKLQAILRGIMLRRTK 308
Score = 71 (30.1 bits), Expect = 6.9e-22, Sum P(4) = 6.9e-22
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 77 SSYVFGGILADEMGLGKTVELLACIFAHR 105
S + GGILAD+ GLGKT+ ++ I +
Sbjct: 71 SRHCLGGILADDQGLGKTISTISLILLQK 99
Score = 67 (28.6 bits), Expect = 6.9e-22, Sum P(4) = 6.9e-22
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 489 HAEAAKLLNSLLKLRQACCHPQV 511
H A LL LL+LRQAC HPQ+
Sbjct: 334 HEHMAYLLVMLLRLRQACNHPQL 356
Score = 44 (20.5 bits), Expect = 6.9e-22, Sum P(4) = 6.9e-22
Identities = 14/74 (18%), Positives = 32/74 (43%)
Query: 694 ITVCENLKQKYLSGFSVKLSVAQQEF-RKSYMQVCNALDDREKQYSAWWLEALHHA---E 749
I + ++++ L+ K ++ K++ + C++ + R + S +W +
Sbjct: 562 IAIKNTVEERILTLHERKRNIVASALGEKNWQKFCDSTNTRRSRISVFWCVEYPRVFIDK 621
Query: 750 GNKDFSAELIRKIE 763
NK FS + K E
Sbjct: 622 RNKTFSYLISHKCE 635
Score = 38 (18.4 bits), Expect = 2.8e-21, Sum P(4) = 2.8e-21
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 986 MATTRLHLKED---DNDTSVDALSPDELASASVTNSSEKFISMTLLSQVKGKL 1035
+A+ R++ E+ D D+SV + S + NS + L+S G L
Sbjct: 467 VASRRVYFIENPSCDRDSSVACRARQSRHSTNKDNSISGLVCAMLMSLKAGNL 519
>UNIPROTKB|I3L7V5 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 EMBL:CU468873 EMBL:AEMK01166609
EMBL:CU207228 Ensembl:ENSSSCT00000031433 Uniprot:I3L7V5
Length = 1147
Score = 287 (106.1 bits), Expect = 9.5e-22, Sum P(3) = 9.5e-22
Identities = 102/366 (27%), Positives = 159/366 (43%)
Query: 212 IEATDSPVATG-ATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDI 270
+ TDS T TLI+CPA ++ W E+ + L+ +Y G + ++ +
Sbjct: 615 LSKTDSSEFTSHRTLIICPASLIHHWKNEVQKRVCNNELRVYLYHGPNRDQ--NAKVLSM 672
Query: 271 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEA 330
DIV+TTY +L +++ + EG + P L RI W RI LDEA
Sbjct: 673 Y-----DIVITTYSLLAKEIP--TKEQEGAVPGAELSVQGTASPLL--RIVWARIILDEA 723
Query: 331 QMVESNAAAATEMAL-RLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVI 389
V+ N T MA+ +L A+ RW +TGTPIQ L D+Y LL+FL+ SPF W
Sbjct: 724 HTVK-NPRVQTSMAVCKLQAQARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFSLW---- 778
Query: 390 RDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDE----LQLPPQEECVSWLTFSPIEEHF 445
+ +NG E + K ++ R +K + ++LP ++ + L S EE
Sbjct: 779 KSQVDNGSKKGGERLNILTKSLLLRRTKDQLDSTGKPLVELPQRQFQLHRLKLSEDEETV 838
Query: 446 YQ----SQHETCVGYAREV------IQRLKDNILKRNVPGHASSDALYNPI---ITHAEA 492
Y Y + R DN + V SD P+ + +
Sbjct: 839 YNVLFARSRSDLQSYLKRYETGDRSSARSPDNPFNKEVAQEFGSDGPRRPVAGDLQGSST 898
Query: 493 AKLLNSLLKLRQACCHPQVGSSGLRSLQQSP----LSMDEILMVLIGKTKIEGEEALRKL 548
+L+ LL+LRQ CCH + S L + LS++E L L +++ E+ +
Sbjct: 899 VHILSQLLRLRQCCCHLSLLKSALDPTELKSEGLVLSLEEQLSALT-LSELHSSESSASV 957
Query: 549 VMALNG 554
+LNG
Sbjct: 958 --SLNG 961
Score = 69 (29.3 bits), Expect = 9.5e-22, Sum P(3) = 9.5e-22
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 82 GGIL--ADEMGLGKTVELLACIFAHR---KPASDDSIFIDTAVQVTDDQKVNLRR 131
GGIL AD+MGLGKT+ ++A I + K D T + TD + R
Sbjct: 573 GGILFPADDMGLGKTLTMIALILTQKNQEKNKEKDKTTSSTWLSKTDSSEFTSHR 627
Score = 38 (18.4 bits), Expect = 9.5e-22, Sum P(3) = 9.5e-22
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 734 EKQYSAWWLEALHHAEGNKD-------FSAELIRKIEEA--ISGSLNKSRALRTAS 780
E+Q SA L LH +E + F EL + ++ IS L + A+R S
Sbjct: 937 EEQLSALTLSELHSSESSASVSLNGTCFKVELFDSMRQSTKISSLLAELEAIRRNS 992
>UNIPROTKB|F1SAY2 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:CU468873
EMBL:AEMK01166609 EMBL:CU207228 Ensembl:ENSSSCT00000007376
Uniprot:F1SAY2
Length = 1169
Score = 287 (106.1 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
Identities = 102/366 (27%), Positives = 159/366 (43%)
Query: 212 IEATDSPVATG-ATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDI 270
+ TDS T TLI+CPA ++ W E+ + L+ +Y G + ++ +
Sbjct: 637 LSKTDSSEFTSHRTLIICPASLIHHWKNEVQKRVCNNELRVYLYHGPNRDQ--NAKVLSM 694
Query: 271 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEA 330
DIV+TTY +L +++ + EG + P L RI W RI LDEA
Sbjct: 695 Y-----DIVITTYSLLAKEIP--TKEQEGAVPGAELSVQGTASPLL--RIVWARIILDEA 745
Query: 331 QMVESNAAAATEMAL-RLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVI 389
V+ N T MA+ +L A+ RW +TGTPIQ L D+Y LL+FL+ SPF W
Sbjct: 746 HTVK-NPRVQTSMAVCKLQAQARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFSLW---- 800
Query: 390 RDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDE----LQLPPQEECVSWLTFSPIEEHF 445
+ +NG E + K ++ R +K + ++LP ++ + L S EE
Sbjct: 801 KSQVDNGSKKGGERLNILTKSLLLRRTKDQLDSTGKPLVELPQRQFQLHRLKLSEDEETV 860
Query: 446 YQ----SQHETCVGYAREV------IQRLKDNILKRNVPGHASSDALYNPI---ITHAEA 492
Y Y + R DN + V SD P+ + +
Sbjct: 861 YNVLFARSRSDLQSYLKRYETGDRSSARSPDNPFNKEVAQEFGSDGPRRPVAGDLQGSST 920
Query: 493 AKLLNSLLKLRQACCHPQVGSSGLRSLQQSP----LSMDEILMVLIGKTKIEGEEALRKL 548
+L+ LL+LRQ CCH + S L + LS++E L L +++ E+ +
Sbjct: 921 VHILSQLLRLRQCCCHLSLLKSALDPTELKSEGLVLSLEEQLSALT-LSELHSSESSASV 979
Query: 549 VMALNG 554
+LNG
Sbjct: 980 --SLNG 983
Score = 69 (29.3 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 82 GGIL--ADEMGLGKTVELLACIFAHR---KPASDDSIFIDTAVQVTDDQKVNLRR 131
GGIL AD+MGLGKT+ ++A I + K D T + TD + R
Sbjct: 595 GGILFPADDMGLGKTLTMIALILTQKNQEKNKEKDKTTSSTWLSKTDSSEFTSHR 649
Score = 38 (18.4 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 734 EKQYSAWWLEALHHAEGNKD-------FSAELIRKIEEA--ISGSLNKSRALRTAS 780
E+Q SA L LH +E + F EL + ++ IS L + A+R S
Sbjct: 959 EEQLSALTLSELHSSESSASVSLNGTCFKVELFDSMRQSTKISSLLAELEAIRRNS 1014
>POMBASE|SPBC582.10c [details] [associations]
symbol:SPBC582.10c "ATP-dependent DNA helicase Rhp16b
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000113
"nucleotide-excision repair factor 4 complex" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006289 "nucleotide-excision repair"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
PomBase:SPBC582.10c GO:GO:0005829 GO:GO:0005524 GO:GO:0003677
EMBL:CU329671 GO:GO:0000113 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006289
GO:GO:0008094 EMBL:AB027965 PIR:T37973 RefSeq:NP_595178.1
ProteinModelPortal:Q10332 EnsemblFungi:SPBC582.10c.1 GeneID:2540907
KEGG:spo:SPBC582.10c HOGENOM:HOG000241058 OMA:QACNHPQ
OrthoDB:EOG44XNQX NextBio:20802022 Uniprot:Q10332
Length = 830
Score = 245 (91.3 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 80/295 (27%), Positives = 136/295 (46%)
Query: 223 ATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTT 282
+TL+V P ++ QW++E+ ++ L +Y GA L + I E D+V+TT
Sbjct: 290 STLVVAPLSLIKQWESEVQTKSK---LTAIVYHGASRYKL----LKVIHEY---DVVITT 339
Query: 283 YDVL-KEDLSHDSDRHEGDR--RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA 339
Y +L E +SH++ +G ++K+ P L +WWRI LDEA +++ ++
Sbjct: 340 YQILVSEWVSHNTTGTDGKSPTEAKSYEKKKPS----LFAFYWWRIILDEAHTIKNKSSK 395
Query: 340 ATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVG 399
+ L +RWC+TGTP+Q +D+LY L++FL +PF+ W + I P G+
Sbjct: 396 SALACCALQGINRWCLTGTPLQNNVDELYSLVKFLHINPFNDQSVWKDQISLPLCQGEEN 455
Query: 400 AM-EFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSW---LTFSPIEEHFYQSQHETCVG 455
+ + IM R +K + + L + I + F +S+ +
Sbjct: 456 LVFKRLRMLLSVIMLRRTKTLLEANAGKDGTGGALKLSKRLVYKVICK-FEESERDFYSN 514
Query: 456 YAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQ 510
AR + +R N + G ++ +L LL+LRQAC HPQ
Sbjct: 515 LARNM-ERTMSNFVNSGKLGKNYTN--------------ILCLLLRLRQACNHPQ 554
Score = 97 (39.2 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 76 TSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSI 113
+ S GGILAD+MGLGKT++++A I +H P SI
Sbjct: 251 SKSSASGGILADDMGLGKTIQMIALILSHPLPKKKHSI 288
>WB|WBGene00020235 [details] [associations]
symbol:T05A12.4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006974 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
GeneTree:ENSGT00700000104571 KO:K15710 EMBL:FO081690
RefSeq:NP_001023359.1 UniGene:Cel.8101 ProteinModelPortal:H2L0J8
SMR:H2L0J8 PRIDE:H2L0J8 EnsemblMetazoa:T05A12.4a GeneID:177453
KEGG:cel:CELE_T05A12.4 CTD:177453 WormBase:T05A12.4a OMA:YLQPCEM
Uniprot:H2L0J8
Length = 1622
Score = 306 (112.8 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 98/387 (25%), Positives = 183/387 (47%)
Query: 208 CDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSI 267
C + +++ A G TLI+ P ++ QW EI++H ++K Y G R
Sbjct: 414 CSKCTSESENRRAVGTTLIILPESLIFQWFTEISKHCSD-NIKVMFYFGIRKHGYLQPCE 472
Query: 268 MDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICL 327
MD D++LTTYD L+ ++S ++ G R +R + + + + L + +WRI +
Sbjct: 473 MD-----SYDVILTTYDTLRNEMSFSEEK--GPPRNLRNESKTLNLTSSLMHVEFWRIIV 525
Query: 328 DEAQMVESNAAAA-TEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWI 386
DE+Q++ ++ T M ++L+A++ WC+TGTP+ + + +Y L FL PF +++
Sbjct: 526 DESQVLPHGVSSQLTRMLMKLHAENWWCVTGTPLVKSIAGIYPLFNFLNLFPFGSPQFFS 585
Query: 387 EVIRDPYENGDVG----AME-------FTHKFFKEIMCRSSKVHVSDELQLPPQEECVSW 435
+ + Y N + A++ F + ++M R +K S +L+LP E
Sbjct: 586 QYVHPQYLNFALSLRDEALDKNNLPRVFLLEILSKMMSRKTKQDKSVQLKLPKLTEVEKI 645
Query: 436 LTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKL 495
+ F+ +EE Y+ + E RL+ NI++R + G+A + L + + K+
Sbjct: 646 IYFTTVEERQYKDEKE-----------RLR-NIVERAI-GNADNSDLLSDLQCRE---KV 689
Query: 496 LNSLLKLRQACCHPQVGSSGLRSLQQS-PLSMDEILMVLIGKTKIEGEEALRKLVMALNG 554
L L LRQ +G S + S L+ + ++ LI K + R+ + G
Sbjct: 690 LQELRLLRQIIL---LGQRKTESDKVSCVLAPETVIFKLIKNKKTTIKANFREYLSYSLG 746
Query: 555 LAGIALIEKNLSQAVSLYKEAMAVVEE 581
+AG+ ++ A+ Y A+ +E
Sbjct: 747 VAGVQILMDMPQTAIETYSSALINYDE 773
Score = 286 (105.7 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 108/437 (24%), Positives = 190/437 (43%)
Query: 58 STLFYNPFSGSLSLSP-------DYTSSYVF-GGILADEMGLGKTVELLACIFAHRKPAS 109
++L Y P G+++L+ D + GGILADEMGLGKT++ L+ I +RK +
Sbjct: 265 TSLVYYPSIGAIALNEMTIEERKDIEKRFTLKGGILADEMGLGKTIQALSLIATNRKHSK 324
Query: 110 DDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWV-QCDI-------CD 161
+ I+ D + +V + + + I A S + KG Q DI CD
Sbjct: 325 VE-IY-DESGEVETVNRDESKSTNSSIAQQIKLAESSYAEMKGARQNQADIRYNLNSFCD 382
Query: 162 AWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVAT 221
+ C S + ++ K +K C + +++ A
Sbjct: 383 G-ETILCSNCSQMCSAKICGWDFDKFKNEKFQ--------------CSKCTSESENRRAV 427
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G TLI+ P ++ QW EI++H ++K Y G R MD D++LT
Sbjct: 428 GTTLIILPESLIFQWFTEISKHCSD-NIKVMFYFGIRKHGYLQPCEMD-----SYDVILT 481
Query: 282 TYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAAT 341
TYD L+ ++S ++ R K + +L+ FW I + + ++ T
Sbjct: 482 TYDTLRNEMSFSEEKGP-PRNLRNESKTLNLTSSLMHVEFWRIIVDESQVLPHGVSSQLT 540
Query: 342 EMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVG-- 399
M ++L+A++ WC+TGTP+ + + +Y L FL PF +++ + + Y N +
Sbjct: 541 RMLMKLHAENWWCVTGTPLVKSIAGIYPLFNFLNLFPFGSPQFFSQYVHPQYLNFALSLR 600
Query: 400 --AME-------FTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQH 450
A++ F + ++M R +K S +L+LP E + F+ +EE Y+ +
Sbjct: 601 DEALDKNNLPRVFLLEILSKMMSRKTKQDKSVQLKLPKLTEVEKIIYFTTVEERQYKDEK 660
Query: 451 ETCVGYAREVIQRLKDN 467
E R +++R N
Sbjct: 661 ERL----RNIVERAIGN 673
Score = 42 (19.8 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 981 HDEIRMATTRLHLKEDDNDTSVD 1003
+DE+ +A R HL E ND+S D
Sbjct: 771 YDELILAE-RNHLPEIKNDSSRD 792
>SGD|S000004022 [details] [associations]
symbol:RAD5 "DNA helicase" species:4932 "Saccharomyces
cerevisiae" [GO:0010994 "free ubiquitin chain polymerization"
evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042276
"error-prone translesion synthesis" evidence=IMP] [GO:0009378
"four-way junction helicase activity" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IGI;IMP] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0000403 "Y-form
DNA binding" evidence=IDA] [GO:0000400 "four-way junction DNA
binding" evidence=IDA] [GO:0006301 "postreplication repair"
evidence=IDA] [GO:0000209 "protein polyubiquitination"
evidence=IDA] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
SGD:S000004022 Pfam:PF00097 Prosite:PS00518 GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 GO:GO:0008270 EMBL:BK006945
GO:GO:0000790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0006302
GO:GO:0000209 InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000403 GO:GO:0009378
GO:GO:0008094 GO:GO:0042276 GeneTree:ENSGT00700000104586
GO:GO:0000400 GO:GO:0010994 KO:K15505 HOGENOM:HOG000040492
OMA:MDPWWSP OrthoDB:EOG4J40R2 EMBL:M96644 EMBL:Z73204 EMBL:S46103
PIR:S64859 RefSeq:NP_013132.1 ProteinModelPortal:P32849 SMR:P32849
DIP:DIP-5830N IntAct:P32849 MINT:MINT-2784640 STRING:P32849
PaxDb:P32849 PeptideAtlas:P32849 EnsemblFungi:YLR032W GeneID:850719
KEGG:sce:YLR032W CYGD:YLR032w NextBio:966793 Genevestigator:P32849
GermOnline:YLR032W Uniprot:P32849
Length = 1169
Score = 235 (87.8 bits), Expect = 2.8e-21, Sum P(4) = 2.8e-21
Identities = 63/236 (26%), Positives = 117/236 (49%)
Query: 218 PVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGAD 277
P A+ TLIV P +L QW E T+ + +Y G SSL +++ ++
Sbjct: 582 PYASKTTLIVVPMSLLTQWSNEFTKANNSPDMYHEVYYGGNVSSLK--TLLTKTK-TPPT 638
Query: 278 IVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 337
+VLTTY +++ + + S +G R I + L + ++RI +DE + +
Sbjct: 639 VVLTTYGIVQNEWTKHS---KG-----RMTDEDVNISSGLFSVNFYRIIIDEGHNIRNRT 690
Query: 338 AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGD 397
++ + L K +W +TGTPI +LDDLY L++FL+ P+ +W + P+E+ +
Sbjct: 691 TVTSKAVMALQGKCKWVLTGTPIINRLDDLYSLVKFLELDPWRQINYWKTFVSTPFESKN 750
Query: 398 VG-AMEFTHKFFKEIMCRSSKVHVSDE-----LQLPPQEECVSWLTFSPIEEHFYQ 447
A + + + ++ R +K + D+ ++LPP+E + L FS ++ Y+
Sbjct: 751 YKQAFDVVNAILEPVLLRRTK-QMKDKDGKPLVELPPKEVVIKRLPFSKSQDLLYK 805
Score = 96 (38.9 bits), Expect = 2.8e-21, Sum P(4) = 2.8e-21
Identities = 25/67 (37%), Positives = 35/67 (52%)
Query: 61 FY-NPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFA--HRKPASDDSIFIDT 117
FY N SG SL+ + + GGIL+DEMGLGKTV + + + H D +F
Sbjct: 505 FYANLHSGEFSLAKPILKTMIKGGILSDEMGLGKTVAAYSLVLSCPHDSDVVDKKLFDIE 564
Query: 118 AVQVTDD 124
V+D+
Sbjct: 565 NTAVSDN 571
Score = 62 (26.9 bits), Expect = 2.8e-21, Sum P(4) = 2.8e-21
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 465 KDNILKRNVPGHASSDALYNPIITHAEAA---------------KLLNSLLKLRQACCHP 509
K+ ++KR +P S D LY ++ AE + +L +L+LRQ CCHP
Sbjct: 787 KEVVIKR-LPFSKSQDLLYKFLLDKAEVSVKSGIARGDLLKKYSTILVHILRLRQVCCHP 845
Query: 510 Q-VGS 513
+GS
Sbjct: 846 GLIGS 850
Score = 52 (23.4 bits), Expect = 2.9e-20, Sum P(4) = 2.9e-20
Identities = 23/117 (19%), Positives = 51/117 (43%)
Query: 860 FRLKKSQGDIASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDV-RETV 918
F L K++ + S DL KK S++ L Q + +G+++ D+ +
Sbjct: 806 FLLDKAEVSVKSGIARGDLLKKYSTILVHILRLRQVCCHP--GLIGSQDENDEDLSKNNK 863
Query: 919 VVSKSPSELEVILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYANAR-SLATAQ 974
+V++ EL+ ++ V+ +E + A ++L + K + + S+ T +
Sbjct: 864 LVTEQTVELDSLMRVVSERFDNSFSKEELDAMIQRLKVKYPDNKSFQSLECSICTTE 920
Score = 44 (20.5 bits), Expect = 2.8e-21, Sum P(4) = 2.8e-21
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 14 RPYQRRAAYWMVQREK 29
R YQ++ WM++RE+
Sbjct: 438 RNYQKQGLTWMLRREQ 453
>ASPGD|ASPL0000065871 [details] [associations]
symbol:AN7538 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 EMBL:AACD01000129 EMBL:BN001304 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
OrthoDB:EOG44XNQX RefSeq:XP_680807.1 ProteinModelPortal:Q5AVZ2
EnsemblFungi:CADANIAT00000644 GeneID:2869681 KEGG:ani:AN7538.2
HOGENOM:HOG000215811 OMA:FMKRRTK Uniprot:Q5AVZ2
Length = 1132
Score = 216 (81.1 bits), Expect = 3.1e-21, Sum P(4) = 3.1e-21
Identities = 65/203 (32%), Positives = 100/203 (49%)
Query: 320 IFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
++W+RI LDEA +++ A AT+ A L A++RWC++GTP+Q LD+L L+RFL+ P+
Sbjct: 495 VYWYRIILDEAHTIKNRNAKATQAAYALDAEYRWCLSGTPMQNNLDELQSLIRFLRIKPY 554
Query: 380 SISRWWIEVIRDPYENGDVG-AMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLT- 437
+ W + I P NG G A+E K M R +K + L P EE
Sbjct: 555 NDLANWKDQITRPLANGRGGLAIERLQVVLKAFMKRRTKDVLKLNANLKPGEEADGEKKN 614
Query: 438 --FSPIEEHFYQSQHETCVGYAR--EVIQRLKDNILKRNVPGHASSDALYNPIITHAEAA 493
F ++ + + G E +++ DN L++ + G + D +A A
Sbjct: 615 PGFQIVKREVVKVAVDFMPGEKNFYERLEQRTDNSLEKMM-GDSKID--------YAGAL 665
Query: 494 KLLNSLLKLRQACCHPQVGSSGL 516
LL L+LRQ C HP + S L
Sbjct: 666 TLL---LRLRQCCNHPDLVRSDL 685
Score = 91 (37.1 bits), Expect = 3.1e-21, Sum P(4) = 3.1e-21
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 209 DELIEATDSPVATG-ATLIVCPAPILAQWDAEITRHTRPGS-LKTCIYEGARNSSLSDTS 266
+E E+ + P +TL+V P ++ QW++EI P L+ +Y G + +D S
Sbjct: 404 EESAESRNLPKGLSKSTLVVAPLALIKQWESEIKTKVEPSHRLRVLVYHGNARAKATD-S 462
Query: 267 IMDISELVGADIVLTTYDVLKED 289
+ D D+V+TTY L +
Sbjct: 463 LDDY------DVVITTYGTLTSE 479
Score = 88 (36.0 bits), Expect = 3.1e-21, Sum P(4) = 3.1e-21
Identities = 16/26 (61%), Positives = 22/26 (84%)
Query: 82 GGILADEMGLGKTVELLACIFAHRKP 107
GGILAD+MGLGKTV+ +A + ++KP
Sbjct: 357 GGILADDMGLGKTVQAIALMLTNQKP 382
Score = 42 (19.8 bits), Expect = 3.1e-21, Sum P(4) = 3.1e-21
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 15 PYQRRAAYWMVQREKG 30
P+QR+ WM +E G
Sbjct: 327 PHQRQGVNWMCAKEIG 342
>TAIR|locus:2095360 [details] [associations]
symbol:AT3G20010 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0010014 "meristem initiation" evidence=RCA] [GO:0010050
"vegetative phase change" evidence=RCA] [GO:0010073 "meristem
maintenance" evidence=RCA] [GO:0010267 "production of ta-siRNAs
involved in RNA interference" evidence=RCA] [GO:0016246 "RNA
interference" evidence=RCA] [GO:0031047 "gene silencing by RNA"
evidence=RCA] [GO:0031507 "heterochromatin assembly" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0045787 "positive regulation of cell
cycle" evidence=RCA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AP002050 HSSP:Q99728
HOGENOM:HOG000241058 ProtClustDB:CLSN2684720 IPI:IPI00543291
RefSeq:NP_188635.1 UniGene:At.43523 ProteinModelPortal:Q9LHE4
SMR:Q9LHE4 PaxDb:Q9LHE4 PRIDE:Q9LHE4 EnsemblPlants:AT3G20010.1
GeneID:821539 KEGG:ath:AT3G20010 TAIR:At3g20010 InParanoid:Q9LHE4
OMA:SSAICYE PhylomeDB:Q9LHE4 Genevestigator:Q9LHE4 Uniprot:Q9LHE4
Length = 1047
Score = 205 (77.2 bits), Expect = 3.8e-21, Sum P(4) = 3.8e-21
Identities = 44/134 (32%), Positives = 69/134 (51%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L ++ W+RI LDEAQ +++ L AK RWC++GTPIQ +DDLY RFL+
Sbjct: 537 LGKVGWFRIVLDEAQTIKNYRTQMARSCCTLRAKRRWCLSGTPIQNTIDDLYSYFRFLRY 596
Query: 377 SPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDE---LQLPPQEECV 433
P+++ + + I+ P + + IM R +K + D + LPP+ +
Sbjct: 597 DPYAVYKSFYSTIKVPISRNSCQGYKKLQAVLRAIMLRRTKGTLLDGKPIINLPPKVVNL 656
Query: 434 SWLTFSPIEEHFYQ 447
S + FS E FY+
Sbjct: 657 SQVDFSVAERSFYK 670
Score = 95 (38.5 bits), Expect = 3.8e-21, Sum P(4) = 3.8e-21
Identities = 27/86 (31%), Positives = 41/86 (47%)
Query: 220 ATGATLIVCPAPILAQWDAEITRHTRPGS-LKTCIYEGARNSSLSDTSIMDISELVGADI 278
A G TLIVCPA ++ QW E+ S L +Y G+ + D +EL D+
Sbjct: 413 AAG-TLIVCPASVVRQWARELDEKVSEESKLSVLVYHGSNRTK-------DPNELAEYDV 464
Query: 279 VLTTYDVLKEDLSHDS--DRHEGDRR 302
V+TTY ++ + + D E D +
Sbjct: 465 VVTTYAIVTNEAPNKFLVDEDENDEK 490
Score = 75 (31.5 bits), Expect = 3.8e-21, Sum P(4) = 3.8e-21
Identities = 24/61 (39%), Positives = 33/61 (54%)
Query: 76 TSSYVF-GGILADEMGLGKTVELLACIFAHR---KPASDDSIFIDTAVQV--TDDQKVNL 129
TSS+ GGILAD+ GLGKTV +A I + + S+ S +T V DD+ N
Sbjct: 297 TSSFNCPGGILADDQGLGKTVSTIALILKQKIVSQLKSESSCKQETEALVLDADDESDNA 356
Query: 130 R 130
+
Sbjct: 357 K 357
Score = 60 (26.2 bits), Expect = 3.8e-21, Sum P(4) = 3.8e-21
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 493 AKLLNSLLKLRQACCHPQV 511
A +L LL+LRQAC HPQ+
Sbjct: 694 ANILLLLLRLRQACDHPQL 712
Score = 47 (21.6 bits), Expect = 7.9e-20, Sum P(4) = 7.9e-20
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 743 EALHHAEGNKDFSAELIRKIEEAISGSLNKSRALRTASRYRSISGLTY 790
+A H + K ++++ + K+ EA L + R +R S S + Y
Sbjct: 705 QACDHPQLVKRYNSDPVGKVSEAAVRRLPREARSRLINRLESSSAICY 752
>UNIPROTKB|E1C366 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 EMBL:AADN02032807 IPI:IPI00602086
Ensembl:ENSGALT00000024603 Uniprot:E1C366
Length = 1150
Score = 264 (98.0 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
Identities = 106/372 (28%), Positives = 161/372 (43%)
Query: 212 IEATDSPVATG-ATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDI 270
+ DS V +TLI+CPA ++ W EI R G L+ +Y G ++ +
Sbjct: 614 LSRNDSTVIPSCSTLIICPASLIHHWKKEIDRRVSFGKLRVYLYHGPNREKHAEV----L 669
Query: 271 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEA 330
SE DIV+TTY +L +++ + E + LL R+ W R+ LDEA
Sbjct: 670 SEY---DIVVTTYSLLSKEVPTSKEEGEFPAKDHEVGSGSSACSPLL-RVAWARVILDEA 725
Query: 331 QMVESNAAAATEMAL-RLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWW-IEV 388
++ N T +A+ +L A RW +TGTPIQ L D+Y LLRFL+ SPF + W +V
Sbjct: 726 HTIK-NPKVQTSIAVCKLRASARWAVTGTPIQNNLLDMYSLLRFLRCSPFDEYKVWKYQV 784
Query: 389 IRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDE----LQLPPQEECVSWLTFSPIEEH 444
+ + GD ++ + ++ R +K + + LP + + L S EE
Sbjct: 785 DNNTKKGGDRLSL-----LTRSLLLRRTKDQLDSTGKPLVSLPQRSMQLHQLKLSA-EE- 837
Query: 445 FYQSQHETCVGYAREVIQR-LKDNILKRNVPGHASSD-----------------ALYNPI 486
QS + +R +Q LK K HA S+ A
Sbjct: 838 --QSVYNVLFARSRSTLQSYLKRQEQKNESREHAGSNPFEKVAQDFGCSQKEFLASSQSA 895
Query: 487 ITHAEAAKLLNSLLKLRQACCHPQVGSSGL--RSLQQSPLSMDEILMVLIGKTKIEGEEA 544
+ + A +L+ LL+LRQ CCH + L +L LS+ I L T E +
Sbjct: 896 VQVSSTAHVLSMLLRLRQCCCHLSLLKVALDQANLANEGLSLS-IEEQLSALTLSELQTP 954
Query: 545 LRKLVMALNGLA 556
K + LNG A
Sbjct: 955 DSKSTVYLNGTA 966
Score = 77 (32.2 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 82 GGILADEMGLGKTVELLACIFAHRK 106
GGILAD+MGLGKT+ ++A I ++
Sbjct: 576 GGILADDMGLGKTLTMIALILTQKQ 600
>UNIPROTKB|Q9UNY4 [details] [associations]
symbol:TTF2 "Transcription termination factor 2"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=TAS] [GO:0008023
"transcription elongation factor complex" evidence=TAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=TAS] [GO:0006353
"DNA-dependent transcription, termination" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 GO:GO:0006355 GO:GO:0008380
GO:GO:0003677 GO:GO:0008270 GO:GO:0006397 GO:GO:0005681
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0008094 GO:GO:0008023 GO:GO:0006369
CleanEx:HS_TTF2 EMBL:AL445231 EMBL:AL391476 KO:K15173 EMBL:AF073771
EMBL:AF080255 EMBL:AK291017 EMBL:BC030058 IPI:IPI00290812
IPI:IPI00640904 RefSeq:NP_003585.3 UniGene:Hs.486818
ProteinModelPortal:Q9UNY4 SMR:Q9UNY4 IntAct:Q9UNY4 MINT:MINT-272557
STRING:Q9UNY4 PhosphoSite:Q9UNY4 DMDM:73920148 PaxDb:Q9UNY4
PRIDE:Q9UNY4 Ensembl:ENST00000369466 Ensembl:ENST00000427271
GeneID:8458 KEGG:hsa:8458 UCSC:uc001egx.1 UCSC:uc001egy.3 CTD:8458
GeneCards:GC01P117602 H-InvDB:HIX0000933 HGNC:HGNC:12398
HPA:HPA005776 MIM:604718 neXtProt:NX_Q9UNY4 PharmGKB:PA37063
HOGENOM:HOG000154708 HOVERGEN:HBG053179 InParanoid:Q9UNY4
OMA:WCGSIPW OrthoDB:EOG4GMTWH PhylomeDB:Q9UNY4 ChiTaRS:TTF2
GenomeRNAi:8458 NextBio:31654 Bgee:Q9UNY4 Genevestigator:Q9UNY4
GermOnline:ENSG00000116830 Uniprot:Q9UNY4
Length = 1162
Score = 265 (98.3 bits), Expect = 4.2e-21, Sum P(2) = 4.2e-21
Identities = 102/356 (28%), Positives = 157/356 (44%)
Query: 224 TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTY 283
TLI+CPA ++ W E+ + L+ +Y G S + L DIV+TTY
Sbjct: 644 TLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARV-------LSTYDIVITTY 696
Query: 284 DVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEM 343
++ +++ +++ E + P L RI W RI LDEA V+ N T +
Sbjct: 697 SLVAKEIP--TNKQEAEIPGANLNVEGTSTPLL--RIAWARIILDEAHNVK-NPRVQTSI 751
Query: 344 AL-RLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAME 402
A+ +L A RW +TGTPIQ L D+Y LL+FL+ SPF W R +NG E
Sbjct: 752 AVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLW----RSQVDNGSKKGGE 807
Query: 403 FTHKFFKEIMCRSSKVHVSDE---LQLPPQEEC-VSWLTFSPIEEHFYQSQHETCVGYAR 458
K ++ R +K + L + PQ + + L S EE Y +R
Sbjct: 808 RLSILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYN----VFFARSR 863
Query: 459 EVIQR-LKDNILKRNVPGHASSDALYNPIIT-------HAEAAK--------LLNSLLKL 502
+Q LK + + N G + ++ + H+EAA +L+ LL+L
Sbjct: 864 SALQSYLKRHESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSSTVHILSQLLRL 923
Query: 503 RQACCHPQVGSSGLRSLQQSP----LSMDEILMVLIGKTKIEGEEALRKLVMALNG 554
RQ CCH + S L ++ LS++E L L T E ++ ++LNG
Sbjct: 924 RQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSAL---TLSELRDSEPSSTVSLNG 976
Score = 76 (31.8 bits), Expect = 4.2e-21, Sum P(2) = 4.2e-21
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 82 GGILADEMGLGKTVELLACIFAHR 105
GGILAD+MGLGKT+ ++A I +
Sbjct: 591 GGILADDMGLGKTLTMIALILTQK 614
>UNIPROTKB|E1C1L9 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271 Pfam:PF06839
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0008270 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:AADN02032807
IPI:IPI00821328 Ensembl:ENSGALT00000036922 Uniprot:E1C1L9
Length = 1167
Score = 264 (98.0 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
Identities = 106/372 (28%), Positives = 161/372 (43%)
Query: 212 IEATDSPVATG-ATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDI 270
+ DS V +TLI+CPA ++ W EI R G L+ +Y G ++ +
Sbjct: 631 LSRNDSTVIPSCSTLIICPASLIHHWKKEIDRRVSFGKLRVYLYHGPNREKHAEV----L 686
Query: 271 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEA 330
SE DIV+TTY +L +++ + E + LL R+ W R+ LDEA
Sbjct: 687 SEY---DIVVTTYSLLSKEVPTSKEEGEFPAKDHEVGSGSSACSPLL-RVAWARVILDEA 742
Query: 331 QMVESNAAAATEMAL-RLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWW-IEV 388
++ N T +A+ +L A RW +TGTPIQ L D+Y LLRFL+ SPF + W +V
Sbjct: 743 HTIK-NPKVQTSIAVCKLRASARWAVTGTPIQNNLLDMYSLLRFLRCSPFDEYKVWKYQV 801
Query: 389 IRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDE----LQLPPQEECVSWLTFSPIEEH 444
+ + GD ++ + ++ R +K + + LP + + L S EE
Sbjct: 802 DNNTKKGGDRLSL-----LTRSLLLRRTKDQLDSTGKPLVSLPQRSMQLHQLKLSA-EE- 854
Query: 445 FYQSQHETCVGYAREVIQR-LKDNILKRNVPGHASSD-----------------ALYNPI 486
QS + +R +Q LK K HA S+ A
Sbjct: 855 --QSVYNVLFARSRSTLQSYLKRQEQKNESREHAGSNPFEKVAQDFGCSQKEFLASSQSA 912
Query: 487 ITHAEAAKLLNSLLKLRQACCHPQVGSSGL--RSLQQSPLSMDEILMVLIGKTKIEGEEA 544
+ + A +L+ LL+LRQ CCH + L +L LS+ I L T E +
Sbjct: 913 VQVSSTAHVLSMLLRLRQCCCHLSLLKVALDQANLANEGLSLS-IEEQLSALTLSELQTP 971
Query: 545 LRKLVMALNGLA 556
K + LNG A
Sbjct: 972 DSKSTVYLNGTA 983
Score = 77 (32.2 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 82 GGILADEMGLGKTVELLACIFAHRK 106
GGILAD+MGLGKT+ ++A I ++
Sbjct: 593 GGILADDMGLGKTLTMIALILTQKQ 617
>UNIPROTKB|D4A1K7 [details] [associations]
symbol:Ttf2 "Protein Ttf2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR002464
InterPro:IPR010666 Pfam:PF00176 Pfam:PF06839 PROSITE:PS00690
RGD:1309145 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
IPI:IPI00782268 Ensembl:ENSRNOT00000056142 ArrayExpress:D4A1K7
Uniprot:D4A1K7
Length = 950
Score = 261 (96.9 bits), Expect = 7.9e-21, Sum P(2) = 7.9e-21
Identities = 93/319 (29%), Positives = 144/319 (45%)
Query: 212 IEATDSPVATGA-TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDI 270
+ DS V T TLIVCPA ++ W EI + L+ +Y G I
Sbjct: 611 LSKNDSSVFTSTGTLIVCPASLIHHWKNEIEKRVNSNKLRIYLYHGPNR-------IQHA 663
Query: 271 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEA 330
L DIV+TTY +L +++ + +HEG+ + P L ++ W RI LDEA
Sbjct: 664 KVLSTYDIVITTYSLLAKEIP--TAKHEGEVPGAKLSVEGISAPLL--QVVWARIILDEA 719
Query: 331 QMVESNAAAATEMAL-RLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVI 389
V+ N T +A+ +L A+ RW +TGTPIQ L D+Y L++FL+ SPF W
Sbjct: 720 HNVK-NPRVQTSIAVCKLQAQARWAVTGTPIQNNLLDMYSLMKFLRCSPFDEFSLW---- 774
Query: 390 RDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQ--LP-PQEEC-VSWLTFSPIEEHF 445
+ +NG + E K ++ R +K + + +P P C + L S E
Sbjct: 775 KSQVDNGSMKGGERLSILTKSLLLRRTKDQLDSTGKPLVPLPARSCQLHRLKLSEDERAV 834
Query: 446 YQSQHETCVGYAREVIQR-LKDNILKRNVPGHASSDALYN---------P-IITHAEAAK 494
Y + + +R +Q LK + + PG + + P T A++ +
Sbjct: 835 Y----DVFLARSRSALQSYLKRQEGRGSHPGRSPENPFSRVAQEFGSGVPQCSTAADSRR 890
Query: 495 -----LLNSLLKLRQACCH 508
+L+ LL+LRQ CCH
Sbjct: 891 PSTVHVLSQLLRLRQCCCH 909
Score = 75 (31.5 bits), Expect = 7.9e-21, Sum P(2) = 7.9e-21
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 82 GGILADEMGLGKTVELLACIFAHR 105
GGILAD+MGLGKT+ ++A I +
Sbjct: 571 GGILADDMGLGKTLTMIALILTKK 594
>MGI|MGI:1921294 [details] [associations]
symbol:Ttf2 "transcription termination factor, RNA
polymerase II" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006353 "DNA-dependent transcription,
termination" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1921294 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0008270 GO:GO:0006397
GO:GO:0005681 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0006353 EMBL:AL669937
EMBL:AL669872 GeneTree:ENSGT00700000104545 KO:K15173 CTD:8458
HOGENOM:HOG000154708 HOVERGEN:HBG053179 OMA:WCGSIPW
OrthoDB:EOG4GMTWH EMBL:BC087733 EMBL:BC096625 IPI:IPI00112371
RefSeq:NP_001013044.2 UniGene:Mm.270961 ProteinModelPortal:Q5NC05
SMR:Q5NC05 IntAct:Q5NC05 STRING:Q5NC05 PhosphoSite:Q5NC05
PRIDE:Q5NC05 Ensembl:ENSMUST00000076941 GeneID:74044 KEGG:mmu:74044
UCSC:uc008qrb.2 NextBio:339618 Bgee:Q5NC05 Genevestigator:Q5NC05
GermOnline:ENSMUSG00000033222 Uniprot:Q5NC05
Length = 1138
Score = 261 (96.9 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 103/365 (28%), Positives = 159/365 (43%)
Query: 212 IEATDSPVATGA-TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDI 270
+ DS V T + TLIVCPA ++ W E+ + L+ +Y G S +
Sbjct: 607 LSKNDSSVFTSSGTLIVCPASLIHHWKNEVEKRVTSNRLRIYLYHGPNRSRHAKV----- 661
Query: 271 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEA 330
L DIV+TTY +L +++ + + EG+ P L ++ W RI LDEA
Sbjct: 662 --LSTYDIVITTYSLLAKEIP--TTKQEGEVPGANLSVEGTSAPLL--QVVWARIILDEA 715
Query: 331 QMVESNAAAATEMAL-RLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVI 389
V+ N T +A+ +L A+ RW +TGTPIQ L D+Y L++FL+ SPF W
Sbjct: 716 HNVK-NPRVQTSIAVCKLQAQARWAVTGTPIQNNLLDMYSLMKFLRCSPFDEFSLW---- 770
Query: 390 RDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDE---LQLPPQEEC-VSWLTFSPIEEHF 445
+ +NG + E K ++ R +K + L P C + L S E
Sbjct: 771 KSQVDNGSMKGGERLSILTKSLLLRRTKDQLDSTGKPLVALPARRCQLHRLKLSEDERAV 830
Query: 446 YQ---SQHETCV-GYAREVIQR------LKDNILKRNVPGHASSDALYNPIIT--HAEAA 493
Y ++ + + Y + R DN R SS + P
Sbjct: 831 YDIFLARSRSALQSYLKRQEGRGSHHGRSPDNPFSRVAQEFGSSVSQGCPAADSQRPSTV 890
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQ-QSP---LSMDEILMVLIGKTKIEGEEALRKLV 549
+L+ LL+LRQ CCH + S L + +S LS++E L L +K++ E
Sbjct: 891 HVLSQLLRLRQCCCHLSLLKSALDPTELESEGLVLSLEEQLSALT-LSKVDVSEP--SPT 947
Query: 550 MALNG 554
++LNG
Sbjct: 948 VSLNG 952
Score = 75 (31.5 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 82 GGILADEMGLGKTVELLACIFAHR 105
GGILAD+MGLGKT+ ++A I +
Sbjct: 567 GGILADDMGLGKTLTMIALILTKK 590
>CGD|CAL0000717 [details] [associations]
symbol:orf19.5675 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0032183 "SUMO binding" evidence=IEA] [GO:0006333 "chromatin
assembly or disassembly" evidence=IEA] [GO:0007533 "mating type
switching" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 CGD:CAL0000717
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000129
EMBL:AACQ01000128 RefSeq:XP_713356.1 RefSeq:XP_713403.1
ProteinModelPortal:Q59UP5 GeneID:3644990 GeneID:3645010
KEGG:cal:CaO19.13120 KEGG:cal:CaO19.5675 Uniprot:Q59UP5
Length = 1102
Score = 266 (98.7 bits), Expect = 1.8e-20, Sum P(3) = 1.8e-20
Identities = 98/310 (31%), Positives = 143/310 (46%)
Query: 219 VATGATLIVCPAPILAQWDAEITRHTRPGS-LKTCIYEGARNSSLSDTSIMDISELVGAD 277
V+ G+ LIV P +L QW AEI T+ L IY G + D +M E D
Sbjct: 467 VSKGSNLIVAPVSLLRQWVAEIESKTKSDVFLSVGIYHGDDKKKMKDFDLM--KEY---D 521
Query: 278 IVLTTYDVL----KEDLSHDSDRHEGDRRFM----RFQKRYPVIPTLLTRIFWWRICLDE 329
IVL +Y L K+ S D H+ +R + R K Y V P + RI LDE
Sbjct: 522 IVLVSYTTLVQEWKKHFSEDLKEHQHERNYFPNRSRGGKSY-VSPFFSRESQFHRIILDE 580
Query: 330 AQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF-SISRWWIEV 388
AQ +++ A A++ L A++R+C+TGTP+Q +++LY LLRFLK P+ S ++ ++
Sbjct: 581 AQAIKNKQALASKAMTYLRAQYRFCLTGTPMQNGIEELYPLLRFLKIQPYCSEEKFRADI 640
Query: 389 IR------DPYENGDVG-AMEFTHKFFKEIMCRSSKVHVSDE---LQLPPQEECVSWLTF 438
+ D Y+ DV +M+ K I+ R +K + D L LP + ++T
Sbjct: 641 LTPIKSKTDLYDEYDVKESMKKIQVLLKSILLRRTKDSLIDGVPILNLPEKHVLSDYVTL 700
Query: 439 SPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNS 498
E +YQS +Q+ IL G H + A L
Sbjct: 701 ENDELAYYQSIESR--------VQKAAKKIL-----GE------------HTKNAPALTL 735
Query: 499 LLKLRQACCH 508
LL+LRQACCH
Sbjct: 736 LLRLRQACCH 745
Score = 76 (31.8 bits), Expect = 1.8e-20, Sum P(3) = 1.8e-20
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 82 GGILADEMGLGKTVELLACIFAHR 105
GGILAD+MGLGKT++ LA + +
Sbjct: 446 GGILADDMGLGKTIQTLALMMVSK 469
Score = 40 (19.1 bits), Expect = 1.8e-20, Sum P(3) = 1.8e-20
Identities = 20/82 (24%), Positives = 33/82 (40%)
Query: 538 KIEGEEAL-RKLVMALNGLAGIALIEKNLSQAVSLY-KEAMAVVEEHSEDFRLDPLLNIH 595
KI+ + L R+ + NG A I K L + L+ K V S+ L L+ +
Sbjct: 904 KIKSNQTLIREFIKRDNGFESSAKIHKCLEMILELFSKNPGEKVIVFSQFTSLFDLMALV 963
Query: 596 LHHNLTEILPMVANCATELSQN 617
L + E L + ++ N
Sbjct: 964 LQNQHIEFLRYDGTMSMDVKNN 985
>TAIR|locus:2008470 [details] [associations]
symbol:EDA16 "embryo sac development arrest 16"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0009553
"embryo sac development" evidence=IMP] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
Prosite:PS00518 EMBL:CP002684 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 GO:GO:0009553 InterPro:IPR017907 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 IPI:IPI00518434 RefSeq:NP_176309.2
UniGene:At.36526 UniGene:At.68763 ProteinModelPortal:F4HTG1
SMR:F4HTG1 PRIDE:F4HTG1 EnsemblPlants:AT1G61140.1 GeneID:842407
KEGG:ath:AT1G61140 OMA:WADELHK Uniprot:F4HTG1
Length = 1280
Score = 205 (77.2 bits), Expect = 5.9e-20, Sum P(5) = 5.9e-20
Identities = 45/143 (31%), Positives = 71/143 (49%)
Query: 307 QKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDD 366
+K+ + L ++ W+R+ LDEAQ +++ L AK RWC++GTPIQ +DD
Sbjct: 772 KKKVEFLSGPLAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDD 831
Query: 367 LYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDE--- 423
LY RFLK P+S + I++P V + K +M R +K + D
Sbjct: 832 LYSYFRFLKYDPYSSYVLFCSTIKNPITRNPVKGYQKLQAILKTVMLRRTKGSLLDGKPI 891
Query: 424 LQLPPQEECVSWLTFSPIEEHFY 446
+ LPP+ + + F+ E FY
Sbjct: 892 ISLPPKSIELRKVDFTVEERDFY 914
Score = 95 (38.5 bits), Expect = 5.9e-20, Sum P(5) = 5.9e-20
Identities = 27/96 (28%), Positives = 45/96 (46%)
Query: 209 DELIEATDSPVATGATLIVCPAPILAQWDAEITRH-TRPGSLKTCIYEGARNSSLSDTSI 267
D + + T P A TL+VCP ++ QW E+ + T +L +Y G+ +
Sbjct: 654 DSVGKVTGRPAA--GTLVVCPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTK------ 705
Query: 268 MDISELVGADIVLTTYDVL-----KEDLSHDSDRHE 298
D EL D+V+TT+ ++ K+ L D D +
Sbjct: 706 -DPHELAKYDVVVTTFSIVSMEVPKQPLVDDEDEEK 740
Score = 81 (33.6 bits), Expect = 5.9e-20, Sum P(5) = 5.9e-20
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 82 GGILADEMGLGKTVELLACIFAHR-KPA 108
GGILAD+ GLGKTV +A I R KPA
Sbjct: 579 GGILADDQGLGKTVSTIALILKERSKPA 606
Score = 51 (23.0 bits), Expect = 5.9e-20, Sum P(5) = 5.9e-20
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 495 LLNSLLKLRQACCHP 509
+L LL+LRQAC HP
Sbjct: 941 ILLMLLRLRQACDHP 955
Score = 38 (18.4 bits), Expect = 5.9e-20, Sum P(5) = 5.9e-20
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 16 YQRRAAYWMVQRE 28
+QR A WM Q+E
Sbjct: 559 HQRIALSWMAQKE 571
>TAIR|locus:2207175 [details] [associations]
symbol:AT1G05120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
EMBL:CP002684 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15083 IPI:IPI00524131 RefSeq:NP_172004.1 UniGene:At.49853
ProteinModelPortal:F4I795 SMR:F4I795 EnsemblPlants:AT1G05120.1
GeneID:839319 KEGG:ath:AT1G05120 OMA:IGQYKPI Uniprot:F4I795
Length = 833
Score = 138 (53.6 bits), Expect = 1.0e-19, Sum P(5) = 1.0e-19
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 315 TLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 374
+LL + W RI LDEA ++ + L A +RW ++GTP+Q ++ +LY L+RFL
Sbjct: 347 SLLHSVKWNRIILDEAHYIKERRSNTARAVFALEATYRWALSGTPLQNRVGELYSLIRFL 406
Query: 375 KSSPFS 380
+ P+S
Sbjct: 407 QIRPYS 412
Score = 130 (50.8 bits), Expect = 1.0e-19, Sum P(5) = 1.0e-19
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 220 ATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIV 279
A G TL++CP ++QW EI R T PGS K +Y GA+ + +I E + D V
Sbjct: 192 AAGCTLVLCPLVAVSQWLNEIARFTSPGSTKVLVYHGAKRAK-------NIKEFMNYDFV 244
Query: 280 LTTYDVLKED 289
LTTY ++ +
Sbjct: 245 LTTYSTVESE 254
Score = 85 (35.0 bits), Expect = 1.0e-19, Sum P(5) = 1.0e-19
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 80 VFGGILADEMGLGKTVELLACIFAHRK 106
V GGILADEMG+GKT++ ++ + A R+
Sbjct: 157 VAGGILADEMGMGKTIQAISLVLARRE 183
Score = 65 (27.9 bits), Expect = 1.0e-19, Sum P(5) = 1.0e-19
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 384 WWIEVIRDP---YENGDVG--AMEFT-HKFFKEIMCRSSKVHVSDELQLPPQEECVSWLT 437
WW + + P Y + +G AM HK K+I+ R +K+ + +L LPP+ + T
Sbjct: 445 WWNKYVAKPITVYGSFGLGKRAMILLKHKVLKDILLRRTKLGRAADLALPPRIITLRRDT 504
Query: 438 FSPIEEHFYQSQHE 451
E +Y+S ++
Sbjct: 505 LDVKEFDYYESLYK 518
Score = 43 (20.2 bits), Expect = 1.0e-19, Sum P(5) = 1.0e-19
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 476 HASSDALYNPIITHAEAAKLLNS-------LLKLRQACCHP 509
+ +S A +N T+ EA L+N+ L +LRQA HP
Sbjct: 517 YKNSQAEFN---TYIEAGTLMNNYAHIFDLLTRLRQAVDHP 554
Score = 41 (19.5 bits), Expect = 4.2e-17, Sum P(4) = 4.2e-17
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 464 LKDNILKRNVPGHASSDALYNPIIT 488
LKD +L+R G A+ AL IIT
Sbjct: 475 LKDILLRRTKLGRAADLALPPRIIT 499
>SGD|S000000318 [details] [associations]
symbol:RAD16 "Protein that binds damaged DNA during NER"
species:4932 "Saccharomyces cerevisiae" [GO:0031463 "Cul3-RING
ubiquitin ligase complex" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0000113 "nucleotide-excision repair factor 4
complex" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0000715 "nucleotide-excision repair, DNA damage
recognition" evidence=IMP;IDA] [GO:0042787 "protein ubiquitination
involved in ubiquitin-dependent protein catabolic process"
evidence=IMP] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SGD:S000000318 Pfam:PF00097 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:BK006936 GO:GO:0000113 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 EMBL:X78993 EMBL:X66247 InterPro:IPR017907
GO:GO:0042787 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031463 GO:GO:0000715 EMBL:M86929 EMBL:Z35983
EMBL:M83553 PIR:S25366 RefSeq:NP_009672.1 ProteinModelPortal:P31244
SMR:P31244 DIP:DIP-697N IntAct:P31244 MINT:MINT-616306
STRING:P31244 PaxDb:P31244 EnsemblFungi:YBR114W GeneID:852411
KEGG:sce:YBR114W CYGD:YBR114w GeneTree:ENSGT00700000104545
HOGENOM:HOG000179829 KO:K15083 OMA:GVVLNNY OrthoDB:EOG4Q5CXS
NextBio:971261 Genevestigator:P31244 GermOnline:YBR114W
Uniprot:P31244
Length = 790
Score = 236 (88.1 bits), Expect = 2.0e-19, Sum P(4) = 2.0e-19
Identities = 57/157 (36%), Positives = 88/157 (56%)
Query: 224 TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTY 283
+L+V P L QW EI +HT+ G LK IY GA ++ DI +L G D+VLTTY
Sbjct: 233 SLVVAPTVALMQWKNEIEQHTK-GQLKIYIYHGASRTT-------DIKDLQGYDVVLTTY 284
Query: 284 DVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEM 343
VL+ S ++ G RR K+ P++L I ++R+ LDEA ++ +
Sbjct: 285 AVLE---SVFRKQNYGFRRKNGLFKQ----PSVLHNIDFYRVILDEAHNIKDRQSNTARA 337
Query: 344 ALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 380
L + RWC++GTP+Q ++ ++Y L+RFL +PF+
Sbjct: 338 VNNLKTQKRWCLSGTPLQNRIGEMYSLIRFLNINPFT 374
Score = 74 (31.1 bits), Expect = 2.0e-19, Sum P(4) = 2.0e-19
Identities = 12/20 (60%), Positives = 18/20 (90%)
Query: 82 GGILADEMGLGKTVELLACI 101
GG+LADEMG+GKT++ +A +
Sbjct: 205 GGVLADEMGMGKTIQTIALL 224
Score = 62 (26.9 bits), Expect = 2.0e-19, Sum P(4) = 2.0e-19
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 409 KEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQS 448
K IM R +KV +D+L LPP+ V F+ E+ Y+S
Sbjct: 439 KNIMLRRTKVERADDLGLPPRIVTVRRDFFNEEEKDLYRS 478
Score = 37 (18.1 bits), Expect = 2.0e-19, Sum P(4) = 2.0e-19
Identities = 4/15 (26%), Positives = 10/15 (66%)
Query: 15 PYQRRAAYWMVQREK 29
P+Q +W++ +E+
Sbjct: 186 PFQLEGLHWLISQEE 200
>GENEDB_PFALCIPARUM|MAL13P1.216 [details] [associations]
symbol:MAL13P1.216 "DNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003678 "DNA helicase
activity" evidence=ISS] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HSSP:P38398 EMBL:AL844509 KO:K15505 RefSeq:XP_001350155.1
ProteinModelPortal:Q8IDQ5 EnsemblProtists:MAL13P1.216:mRNA
GeneID:813773 KEGG:pfa:MAL13P1.216 EuPathDB:PlasmoDB:PF3D7_1343400
HOGENOM:HOG000283331 ProtClustDB:CLSZ2433454 Uniprot:Q8IDQ5
Length = 1446
Score = 179 (68.1 bits), Expect = 2.8e-19, Sum P(5) = 2.8e-19
Identities = 44/146 (30%), Positives = 70/146 (47%)
Query: 308 KRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDL 367
K YP L I W RI +DEA ++++ + + +L + WC+TGTPIQ + D+
Sbjct: 872 KEYP-----LYNITWRRIIIDEAHVIKNKNSIQSVAVWKLRGERNWCLTGTPIQNSIFDI 926
Query: 368 YGLLRFLKSSPFSISRWWIEVIRDPYENGDVG-AMEFTHKFFKEIMCRSSKVHVSDE--- 423
+ L RFL P+ WW + I D + A++ K I+ R +K +
Sbjct: 927 FPLFRFLGIKPYGTIEWWNKEIVDYVNKNKLNLALDVVRKISSPILLRRTKKSKTKNGNS 986
Query: 424 -LQLPPQEECVSWLTFSPIEEHFYQS 448
+ LP + + L FS EE FY++
Sbjct: 987 IISLPKKNIHLEKLEFSLEEEDFYRA 1012
Score = 110 (43.8 bits), Expect = 2.8e-19, Sum P(5) = 2.8e-19
Identities = 30/78 (38%), Positives = 38/78 (48%)
Query: 211 LIEATDSPV--ATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIM 268
LIE T V G TL++ P ++ QW EI RHT+ G + IY G S+
Sbjct: 724 LIENTIKGVHFKRGGTLVIAPLALIYQWKEEIERHTKEGFVTCYIYYGTSKDISSE---- 779
Query: 269 DISELVGADIVLTTYDVL 286
EL G +VLTTY L
Sbjct: 780 ---ELSGYSVVLTTYSTL 794
Score = 90 (36.7 bits), Expect = 2.8e-19, Sum P(5) = 2.8e-19
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 61 FY-NPFSGSLSLS-PDYTSSYVFGGILADEMGLGKTVELLACI 101
FY N +G+ SL+ P + + GGILADEMGLGKT++ + I
Sbjct: 658 FYVNKLTGAFSLTYPQFVPPFR-GGILADEMGLGKTIQSIGLI 699
Score = 51 (23.0 bits), Expect = 2.8e-19, Sum P(5) = 2.8e-19
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 486 IITHAEAAKLLNSLLKLRQACCHP 509
+++H + +L LL+LRQ C HP
Sbjct: 1030 VLSHY--SHVLQLLLRLRQCCSHP 1051
Score = 46 (21.3 bits), Expect = 8.7e-19, Sum P(5) = 8.7e-19
Identities = 22/85 (25%), Positives = 41/85 (48%)
Query: 456 YAREVIQRLKD-NILKRNVPGHASSDALYNPIIT---HAEAAKLLNSLLKLRQA----C- 506
Y++E ++ LK+ N+++ + DA Y P+I+ H K + L Q C
Sbjct: 1151 YSKE-LEILKNGNVMQCCI---CLEDATY-PLISKCLHIMCKKCADDYFHLTQIADKKCP 1205
Query: 507 -CHPQVGSSGLRSLQQSPLSMDEIL 530
C + L++LQ++ +DE+L
Sbjct: 1206 QCDNYISLKSLKTLQENKSPLDELL 1230
Score = 38 (18.4 bits), Expect = 2.8e-19, Sum P(5) = 2.8e-19
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 14 RPYQRRAAYWMVQRE 28
+ YQ +WM RE
Sbjct: 462 KTYQAEGVWWMYTRE 476
Score = 37 (18.1 bits), Expect = 5.7e-08, Sum P(3) = 5.7e-08
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 269 DISELVGADIVLTTYDVLKEDLSHD 293
D ++++ AD YD K ++ D
Sbjct: 211 DTNKIISADQKFVEYDKCKSEVLKD 235
>CGD|CAL0006085 [details] [associations]
symbol:RAD16 species:5476 "Candida albicans" [GO:0000113
"nucleotide-excision repair factor 4 complex" evidence=IEA]
[GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0034644
"cellular response to UV" evidence=IEA] [GO:0000715
"nucleotide-excision repair, DNA damage recognition" evidence=IEA]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IEA] InterPro:IPR001841
InterPro:IPR018957 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 CGD:CAL0006085 Pfam:PF00097
Prosite:PS00518 GO:GO:0005524 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K15083
RefSeq:XP_721196.1 RefSeq:XP_721468.1 ProteinModelPortal:Q5AI84
STRING:Q5AI84 GeneID:3636874 GeneID:3637198 KEGG:cal:CaO19.10486
KEGG:cal:CaO19.2969 Uniprot:Q5AI84
Length = 852
Score = 236 (88.1 bits), Expect = 2.8e-19, Sum P(5) = 2.8e-19
Identities = 54/158 (34%), Positives = 87/158 (55%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G L++ P L QW EI +HT PG LK +Y G+ S+ SI ++S+ D++LT
Sbjct: 287 GPNLVIGPTVALMQWKNEIEKHTEPGMLKVLLYHGSNRSN----SIQELSQY---DVILT 339
Query: 282 TYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAAT 341
+Y VL+ S ++ G +R K I I ++R+ LDEA ++ + +
Sbjct: 340 SYSVLE---SVYRKQNYGFKRKNGLVKEKSAIHN----IEFYRVILDEAHNIKDRNSNTS 392
Query: 342 EMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
A +L K RWC+TGTP+Q ++ ++Y L+R++K PF
Sbjct: 393 RAAGKLNTKKRWCLTGTPLQNRIGEMYSLIRYMKLDPF 430
Score = 76 (31.8 bits), Expect = 2.8e-19, Sum P(5) = 2.8e-19
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 82 GGILADEMGLGKTVELLACIFAH 104
GGILADEMG+GKT++ + +F H
Sbjct: 261 GGILADEMGMGKTIQTIG-LFMH 282
Score = 56 (24.8 bits), Expect = 2.8e-19, Sum P(5) = 2.8e-19
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 411 IMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQS 448
+M R +K+ +D+L LPP+ + F+ E+ YQS
Sbjct: 498 VMLRRTKIERADDLGLPPRVVEIRRDFFNEEEKDLYQS 535
Score = 41 (19.5 bits), Expect = 2.8e-19, Sum P(5) = 2.8e-19
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 991 LHLKEDDNDTSVDALSPDEL 1010
+H +++D ++ L+PD+L
Sbjct: 827 IHATINNDDAAISRLTPDDL 846
Score = 40 (19.1 bits), Expect = 2.8e-19, Sum P(5) = 2.8e-19
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 15 PYQRRAAYWMVQREKGD 31
P+Q W++++E G+
Sbjct: 242 PFQLEGLNWLIKQEDGE 258
>POMBASE|SPAC17A2.12 [details] [associations]
symbol:rrp1 "ATP-dependent DNA helicase (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IGI]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISM] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISM] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=ISM]
[GO:0016567 "protein ubiquitination" evidence=ISM] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0045005
"maintenance of fidelity involved in DNA-dependent DNA replication"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 PomBase:SPAC17A2.12
Prosite:PS00518 GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006338
GO:GO:0000790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004003
GO:GO:0000724 GO:GO:0004842 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0035861 GO:GO:0045005 OrthoDB:EOG4NZZ2M PIR:T37813
RefSeq:NP_594246.1 ProteinModelPortal:O13762 STRING:O13762
EnsemblFungi:SPAC17A2.12.1 GeneID:2542440 KEGG:spo:SPAC17A2.12
OMA:RIRDSEN NextBio:20803497 Uniprot:O13762
Length = 897
Score = 243 (90.6 bits), Expect = 9.4e-19, Sum P(2) = 9.4e-19
Identities = 89/315 (28%), Positives = 138/315 (43%)
Query: 211 LIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGS-LKTCIYEGARNSSLSDTSIMD 269
L + + P+ LIV +L QW E++ P L I+ G+ +L D
Sbjct: 291 LTQKSQDPLRK-TNLIVVSVALLHQWAEELSTKVHPSKKLSVYIHHGSTKKNL------D 343
Query: 270 ISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDE 329
EL D+VLTTY +L ++ + D + P L T W+RI LDE
Sbjct: 344 SYELSQYDVVLTTYSMLAYEMKQN-DAFNNNNPATATPP--PACSLLETS--WYRIVLDE 398
Query: 330 AQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVI 389
A + + A + ++L AK+RWC++GTPIQ +D+ Y LL+FL+ P+ + + + I
Sbjct: 399 AHTIRNRDTLAAKCCVKLDAKYRWCLSGTPIQNHIDEFYSLLKFLRIKPYCVWSLFAKDI 458
Query: 390 RDPYENGDVGAMEFTHKFFKEIMC-----RSSKVHVSDE--LQLPPQEECVSWLTFSPIE 442
P ++ +E K + ++ R+ + V++ + LPP+ + P E
Sbjct: 459 SRPLKSYRADIVEAALKRLRILLASTVFRRTKETRVNNLPIVNLPPKTIRTVSVNLLPEE 518
Query: 443 EHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKL 502
Y Q + Q L DN + H S + LL SLL+L
Sbjct: 519 RALYNEQMSSA--------QSLVDNYFNND---HDLSRYGF-----------LLVSLLRL 556
Query: 503 RQACCHPQ-VGSSGL 516
RQ CCHP V SS L
Sbjct: 557 RQFCCHPWLVKSSSL 571
Score = 73 (30.8 bits), Expect = 9.4e-19, Sum P(2) = 9.4e-19
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 82 GGILADEMGLGKTVELLACIFAHR 105
GG++AD+MGLGKT++ +A + +
Sbjct: 271 GGVMADDMGLGKTIQTIALLLTQK 294
>FB|FBgn0002542 [details] [associations]
symbol:lds "lodestar" species:7227 "Drosophila melanogaster"
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0006353 "DNA-dependent transcription,
termination" evidence=IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS;IDA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007143 "female
meiosis" evidence=IMP] [GO:0034454 "microtubule anchoring at
centrosome" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
EMBL:AE014297 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0007283 GO:GO:0007143 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0034454 GO:GO:0008094 GO:GO:0006353
GeneTree:ENSGT00700000104545 EMBL:X62629 PIR:A40580
RefSeq:NP_524850.2 UniGene:Dm.20310 ProteinModelPortal:P34739
SMR:P34739 DIP:DIP-20026N IntAct:P34739 MINT:MINT-947822
STRING:P34739 PaxDb:P34739 EnsemblMetazoa:FBtr0081758 GeneID:45894
KEGG:dme:Dmel_CG2684 CTD:45894 FlyBase:FBgn0002542
InParanoid:P34739 KO:K15173 OMA:QRHALAW OrthoDB:EOG47M0D4
PhylomeDB:P34739 GenomeRNAi:45894 NextBio:838462 Bgee:P34739
GermOnline:CG2684 Uniprot:P34739
Length = 1061
Score = 179 (68.1 bits), Expect = 9.7e-19, Sum P(4) = 9.7e-19
Identities = 55/171 (32%), Positives = 84/171 (49%)
Query: 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
W RI LDEA +V ++ + ++ L K+RW +TGTPIQ K D+Y LL+FL+ SPF
Sbjct: 597 WRRIILDEAHVVRNHKSQSSLAVCDLRGKYRWALTGTPIQNKELDVYALLKFLRCSPFDD 656
Query: 382 SRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHV-SD-ELQ-LPPQEECVSWLTF 438
W + I +N G + K +M R +K + SD +L LP +E + ++
Sbjct: 657 LHTWKKWI----DNKSAGGQNRLNLLMKSLMLRRTKAQLQSDGKLNSLPNKELRLIEISL 712
Query: 439 SPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDA---LYNPI 486
E + YQ T + Y+R + + +R + SDA YN I
Sbjct: 713 DKEEMNVYQ----TVMTYSRTLFAQFLHQRAERETDFNYRSDANKPTYNQI 759
Score = 103 (41.3 bits), Expect = 9.7e-19, Sum P(4) = 9.7e-19
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G TL+VCPA +L QW++E+ L C++ G N + D DIV+T
Sbjct: 525 GGTLVVCPASLLRQWESEVESKVSRQKLTVCVHHG-NNRETKGKYLRDY------DIVVT 577
Query: 282 TYDVLKED 289
TY ++ +
Sbjct: 578 TYQIVARE 585
Score = 74 (31.1 bits), Expect = 9.7e-19, Sum P(4) = 9.7e-19
Identities = 13/22 (59%), Positives = 19/22 (86%)
Query: 82 GGILADEMGLGKTVELLACIFA 103
GGILAD+MGLGKT+ +++ + A
Sbjct: 460 GGILADDMGLGKTLTMISSVLA 481
Score = 57 (25.1 bits), Expect = 9.7e-19, Sum P(4) = 9.7e-19
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 495 LLNSLLKLRQACCHP 509
+L LL+LRQ CCHP
Sbjct: 788 ILVLLLRLRQICCHP 802
>UNIPROTKB|H7C5K0 [details] [associations]
symbol:HLTF "Helicase-like transcription factor"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 PROSITE:PS51192 HGNC:HGNC:11099 EMBL:AC021059
ProteinModelPortal:H7C5K0 Ensembl:ENST00000467858 Bgee:H7C5K0
Uniprot:H7C5K0
Length = 425
Score = 222 (83.2 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 50/135 (37%), Positives = 67/135 (49%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L I W R+ LDE + + A T+ L L ++ RW +TGTPIQ L DL+ LL FLK
Sbjct: 10 LHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLSFLKL 69
Query: 377 SPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCR---SSKVHVSDELQLPPQEECV 433
PF WW I+ P GD G + K I R +SK+ L+LP ++ +
Sbjct: 70 KPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVFI 129
Query: 434 SWLTFSPIEEHFYQS 448
+T S E YQS
Sbjct: 130 QHITLSDEERKIYQS 144
Score = 77 (32.2 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 28/96 (29%), Positives = 44/96 (45%)
Query: 449 QHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCH 508
QH T R++ Q +K+ G A+ +N A A +L LL+LRQ CCH
Sbjct: 130 QHITLSDEERKIYQSVKNE-------GRATIGRYFNEGTVLAHYADVLGLLLRLRQICCH 182
Query: 509 PQVGSSGLRSLQQSPLSM-----DEILMVLIGKTKI 539
+ ++ + S S S+ +E+ LI K K+
Sbjct: 183 TYLLTNAVSSNGPSAFSLGNDTPEELRKKLIRKMKL 218
Score = 45 (20.9 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 911 RRDVRETVVVSKSPSELEVILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYANARSL 970
R D+ E ++ P EL + K+ + + S + +H L +RK+ N +SL
Sbjct: 269 RNDIHEDNLLECPPEEL-----ARDSEKKSDMEWTSSSKINALMHALTDLRKKNPNIKSL 323
Query: 971 ATAQ 974
+Q
Sbjct: 324 VVSQ 327
>POMBASE|SPBC23E6.02 [details] [associations]
symbol:rrp2 "ATP-dependent DNA helicase (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IGI]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISM] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISM] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=ISM] [GO:0045005 "maintenance of fidelity
involved in DNA-dependent DNA replication" evidence=IMP]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 PomBase:SPBC23E6.02 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GO:GO:0006338 GO:GO:0000790 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004003 GO:GO:0000724 GO:GO:0004842
InterPro:IPR017907 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0045005
OrthoDB:EOG4NZZ2M PIR:T39936 RefSeq:NP_596602.1
ProteinModelPortal:O60177 STRING:O60177 EnsemblFungi:SPBC23E6.02.1
GeneID:2540464 KEGG:spo:SPBC23E6.02 OMA:ACCHSYL NextBio:20801591
Uniprot:O60177
Length = 1040
Score = 214 (80.4 bits), Expect = 2.8e-18, Sum P(3) = 2.8e-18
Identities = 67/235 (28%), Positives = 110/235 (46%)
Query: 224 TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTY 283
TLI+ P +L QW EI P T +Y + S I + +L+ DIVLTTY
Sbjct: 443 TLIITPVSLLQQWHNEILTKIAPSHRPT-VY--IHHGSSKKHKIAE--QLMSYDIVLTTY 497
Query: 284 DVLKEDLSHDS--DRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAAT 341
+V+ + + D+ D + K++ +P W+R+ LDEAQ +++ A
Sbjct: 498 NVIAYEFKNKMAYDKSIEDNAPI---KKFEHLPFFEAE--WYRVILDEAQTIKNRNTLAA 552
Query: 342 EMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRD---PYE-NGD 397
L + +RWC++GTP+Q +++ Y L++FL+ P+S W +D P N +
Sbjct: 553 RGCCLLESTYRWCLSGTPMQNGVEEFYSLIKFLRIKPYSD---WSSFSKDFTIPLSSNIN 609
Query: 398 VGA-MEFTHKFFKEIMCR---SSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQS 448
A M+ K ++ R ++K+ L LPP+ S S E FY +
Sbjct: 610 TSAPMKRFRGLLKAVLLRRTKNTKIDGKPILTLPPKTAVKSETDLSSSEMEFYNT 664
Score = 81 (33.6 bits), Expect = 2.8e-18, Sum P(3) = 2.8e-18
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 82 GGILADEMGLGKTVELLACIFAHRKPAS 109
GGILAD+MGLGKTV+ LA + R P S
Sbjct: 411 GGILADDMGLGKTVQALALLVT-RPPES 437
Score = 67 (28.6 bits), Expect = 2.8e-18, Sum P(3) = 2.8e-18
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 486 IITHAEAAKLLNSLLKLRQACCHP 509
I TH LL LL+LRQACCHP
Sbjct: 682 ITTHY--GSLLVLLLRLRQACCHP 703
>CGD|CAL0004569 [details] [associations]
symbol:orf19.2097 species:5476 "Candida albicans" [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0009378 "four-way junction
helicase activity" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0010994 "free
ubiquitin chain polymerization" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0000209 "protein
polyubiquitination" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
CGD:CAL0004569 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000031 EMBL:AACQ01000030
RefSeq:XP_719543.1 RefSeq:XP_719667.1 ProteinModelPortal:Q5ACX1
STRING:Q5ACX1 GeneID:3638757 GeneID:3638827 KEGG:cal:CaO19.2097
KEGG:cal:CaO19.9644 KO:K15505 Uniprot:Q5ACX1
Length = 1084
Score = 205 (77.2 bits), Expect = 3.6e-18, Sum P(3) = 3.6e-18
Identities = 59/238 (24%), Positives = 103/238 (43%)
Query: 215 TDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTC-IYEGARNSSLSDTSIMDISEL 273
+D P A+ TLIV P +L QW +E + S C ++ G + S+ +
Sbjct: 490 SDRPYASQTTLIVVPMSLLFQWKSEFEKCNN-NSRHVCRLHYGEDQETNLAWSLCNPDNS 548
Query: 274 VGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 333
+++TTY + + + S R + P + + F RI LDE +
Sbjct: 549 KIPIVMITTYGTVLNEFTRLSKRRNS-------KGELPKVGLYSVKFF--RIILDEGHNI 599
Query: 334 ESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPY 393
+ + L + +W +TGTPI +LDDLY L +FL+ P++ +W + P+
Sbjct: 600 RNRNTKTAKSVYELQSSRKWILTGTPIVNRLDDLYSLTKFLELDPWNNFSYWKTFVTLPF 659
Query: 394 ENGDVG-AMEFTHKFFKEIMCR---SSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQ 447
E + ++ + I R S K + ++LP +E + + F+ EE YQ
Sbjct: 660 EQKKISQTLDVVKSILEPIFLRRTKSQKKNGKPLVELPAKEVVIEQIKFNDDEEKLYQ 717
Score = 103 (41.3 bits), Expect = 3.6e-18, Sum P(3) = 3.6e-18
Identities = 23/42 (54%), Positives = 28/42 (66%)
Query: 61 FY-NPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACI 101
FY N ++G LSL S + GGILADEMGLGKT+ LA +
Sbjct: 436 FYANMYNGELSLEKPVIKSSLRGGILADEMGLGKTIATLALV 477
Score = 54 (24.1 bits), Expect = 3.6e-18, Sum P(3) = 3.6e-18
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 494 KLLNSLLKLRQACCH 508
++L +L+LRQ CCH
Sbjct: 742 QILTHILRLRQVCCH 756
Score = 52 (23.4 bits), Expect = 5.8e-13, Sum P(3) = 5.8e-13
Identities = 20/87 (22%), Positives = 33/87 (37%)
Query: 14 RPYQRRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYSTLF--YN-PFSGSLS 70
R YQ+ WM+ REK ++ L T + L+ Y P++ +
Sbjct: 365 RSYQKHGLSWMLAREKELDVLEMLSNEDKLSSQSRKELENLGTMNPLWRKYKWPYATEAT 424
Query: 71 LSP--DYTSSYVFGGILADEMGLGKTV 95
P + T Y + + E+ L K V
Sbjct: 425 QDPTQNQTEKYFYANMYNGELSLEKPV 451
>WB|WBGene00020742 [details] [associations]
symbol:T23H2.3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 KO:K15173 EMBL:FO081319
RefSeq:NP_001032980.2 ProteinModelPortal:P91494 PaxDb:P91494
EnsemblMetazoa:T23H2.3 GeneID:172347 KEGG:cel:CELE_T23H2.3
UCSC:T23H2.3 CTD:172347 WormBase:T23H2.3 HOGENOM:HOG000017261
InParanoid:P91494 OMA:GHNYTSI NextBio:875145 Uniprot:P91494
Length = 1001
Score = 240 (89.5 bits), Expect = 1.6e-17, Sum P(4) = 1.6e-17
Identities = 89/327 (27%), Positives = 140/327 (42%)
Query: 221 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVL 280
+ TLI+ PA ++ QW+AEI R L ++ G + ++ EL D+V+
Sbjct: 446 SNGTLIIAPASLIHQWEAEINRRLESDLLSVFMFHGTKKQRQ-----IEPKELARYDVVI 500
Query: 281 TTYDVLKEDLSHDS---DRHEGDRRFMRFQKRYPVIP-----TLLTRIFWWRICLDEAQM 332
TTY + +L + E D + P P + L R+ W R+ LDEA
Sbjct: 501 TTYTLAANELMEKKAAGSKKEEDSDDESENEENPRRPAGKNDSPLARVAWSRVILDEAHA 560
Query: 333 VESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDP 392
+++ + ++ RL + RWC++GTPI L DLY L+RFL+ F ++W E I P
Sbjct: 561 IKNRLSQCSKAVCRLSSFSRWCLSGTPIHNNLWDLYSLVRFLRIPLFGDRKFWAESIM-P 619
Query: 393 YENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHET 452
+ G + K +M R +K D+ ++ V+ L IE H + +
Sbjct: 620 MKTGMADRVNL---LTKNLMLRRTK----DQQCALTNKKIVN-LKEKKIEIHELEMVGDE 671
Query: 453 CVGYA--REVIQRL-------KDNILK----RNVPGHASSDALYNPI----------ITH 489
GYA E Q+L D+I K R + D NP
Sbjct: 672 ANGYAIMMEAAQKLVKQIVTNTDDIQKYGQIRRRRQRGNDDEFANPYNVGPRNLAGNSNF 731
Query: 490 AEAAKLLNSLLKLRQACCHPQVGSSGL 516
+ +L L++LRQAC H + SG+
Sbjct: 732 QNMSCILLLLMRLRQACVHFHITKSGM 758
Score = 82 (33.9 bits), Expect = 1.6e-17, Sum P(4) = 1.6e-17
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 82 GGILADEMGLGKTVELLACIFAHRKPA 108
GGILAD+MGLGKT+ +L+ I H+K A
Sbjct: 393 GGILADDMGLGKTLSMLSLI-VHQKAA 418
Score = 37 (18.1 bits), Expect = 1.6e-17, Sum P(4) = 1.6e-17
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 15 PYQRRAAYWMVQRE 28
P+Q+ W+V RE
Sbjct: 374 PHQKAGLRWLVWRE 387
Score = 37 (18.1 bits), Expect = 1.6e-17, Sum P(4) = 1.6e-17
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 623 GCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDRK 678
G AFKI+ + D + ++ + + + +D T A+ SD E G + +++
Sbjct: 757 GMDLDAFKINGGDDEDADMKELENLMEKTMADLTIAD------SDNDEEGVDTNKE 806
>POMBASE|SPCC330.01c [details] [associations]
symbol:rhp16 "Rad16 homolog Rhp16" species:4896
"Schizosaccharomyces pombe" [GO:0000109 "nucleotide-excision repair
complex" evidence=IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISM]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0006289 "nucleotide-excision repair" evidence=IGI] [GO:0006290
"pyrimidine dimer repair" evidence=IMP] [GO:0008270 "zinc ion
binding" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=ISM] [GO:0034644 "cellular response to UV" evidence=IGI]
InterPro:IPR001841 InterPro:IPR018957 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
PomBase:SPCC330.01c Pfam:PF00097 Prosite:PS00518 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004003
GO:GO:0034644 GO:GO:0004842 InterPro:IPR017907 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0000109
HOGENOM:HOG000179829 OrthoDB:EOG4Q5CXS EMBL:S83324 EMBL:AB027876
PIR:T41479 PIR:T52472 ProteinModelPortal:P79051 STRING:P79051
NextBio:20800041 Uniprot:P79051
Length = 861
Score = 186 (70.5 bits), Expect = 1.2e-16, Sum P(4) = 1.2e-16
Identities = 53/159 (33%), Positives = 82/159 (51%)
Query: 224 TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDIS--ELVGADIVLT 281
TL+V P + QW EI HT +L T +Y G DIS EL D+VLT
Sbjct: 304 TLVVAPVVAIMQWKEEIDTHTNK-ALSTYLYYGQAR---------DISGEELSSYDVVLT 353
Query: 282 TYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAAT 341
+Y+V++ + +R G RR K +LL ++ ++RI LDEA ++S
Sbjct: 354 SYNVIES--VYRKER-SGFRRKNGVVKE----KSLLHQMEFYRIILDEAHGIKSRTCNTA 406
Query: 342 EMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 380
L + C++GTP+Q ++ +L+ LLRFL++ PF+
Sbjct: 407 RAVCGLRTTRKICLSGTPLQNRIGELFSLLRFLRADPFA 445
Score = 78 (32.5 bits), Expect = 1.2e-16, Sum P(4) = 1.2e-16
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 82 GGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQV 121
GGILADEMG+GKT++ +A + + +P ++ + V +
Sbjct: 276 GGILADEMGMGKTIQTIALLLS--EPRGKPTLVVAPVVAI 313
Score = 78 (32.5 bits), Expect = 1.2e-16, Sum P(4) = 1.2e-16
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 393 YENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQS 448
YE A + H K IM R +K+ +D+L LPP+ V F+ EE YQS
Sbjct: 494 YEGPGKLAFKKVHSLLKHIMLRRTKLERADDLGLPPRVVEVRKDLFNEEEEDVYQS 549
Score = 45 (20.9 bits), Expect = 1.2e-16, Sum P(4) = 1.2e-16
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 15 PYQRRAAYWMVQRE 28
P+QR YW+ ++E
Sbjct: 257 PFQREGVYWLKRQE 270
>SGD|S000004237 [details] [associations]
symbol:IRC20 "Putative helicase" species:4932 "Saccharomyces
cerevisiae" [GO:0045003 "double-strand break repair via
synthesis-dependent strand annealing" evidence=IGI;IMP] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006950 "response to stress" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SGD:S000004237
Prosite:PS00518 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:BK006945
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386 HSSP:Q9LRB7
EMBL:U20865 InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045003 PIR:S59393
RefSeq:NP_013348.1 ProteinModelPortal:Q06554 SMR:Q06554
DIP:DIP-6373N IntAct:Q06554 MINT:MINT-700566 STRING:Q06554
PaxDb:Q06554 EnsemblFungi:YLR247C GeneID:850949 KEGG:sce:YLR247C
CYGD:YLR247c GeneTree:ENSGT00700000104571 KO:K15710 OMA:HTWGVSG
OrthoDB:EOG4Q2HPM NextBio:967413 Genevestigator:Q06554
GermOnline:YLR247C Uniprot:Q06554
Length = 1556
Score = 213 (80.0 bits), Expect = 1.3e-16, Sum P(3) = 1.3e-16
Identities = 86/327 (26%), Positives = 155/327 (47%)
Query: 221 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMD--ISELVGADI 278
T TLI+CP IL QW EI H SLK Y G N + D +D + +L DI
Sbjct: 430 TKTTLIICPNAILKQWLEEIELHAN--SLKWYTYRGY-NEIMKDCKTVDEAVQQLCQYDI 486
Query: 279 VLTTYDVLKEDLSH-DSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 337
++T+Y+++ ++ H + +R RR + Y P L + + RI LDE QM+ S++
Sbjct: 487 IVTSYNIIATEVHHAEFNRSIRSRRLKSPKYDYSS-PLALMQFY--RIILDEVQMLRSSS 543
Query: 338 AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGD 397
+ + L+ H W ++GTPIQ + + ++ +LK PF +I +++ + +
Sbjct: 544 TYSAKCTSLLHRIHTWGVSGTPIQN-IYNFRMIMSYLKLHPFCDEVDFIRTLQEEIKLRN 602
Query: 398 VGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEE-CVSWLTFSPIEEHFYQSQHETCVGY 456
A ++T F + + + D + + + + C+ + + QH +
Sbjct: 603 E-AKDYTSNDFV-CQLKGVRFSIKDCMNIFYRYDLCIRHSKANVASQIHIPRQHNFIIPL 660
Query: 457 AREVIQ-----RLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLL-KLRQACCH-- 508
I+ L +N L+ + G+ +SD +P +++A LN L +LR CCH
Sbjct: 661 EFAPIEWDNYLNLWNNFLE--LSGY-NSDGSGSPRVSNA----FLNEWLSRLRYICCHAL 713
Query: 509 -PQVGSSGLRSLQQ--SPLS-MDEILM 531
P++ S+ + L S +S +D+IL+
Sbjct: 714 FPEILSTRQKRLHGHLSRISNIDDILI 740
Score = 97 (39.2 bits), Expect = 1.3e-16, Sum P(3) = 1.3e-16
Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 62 YNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASD-DSIFIDTAVQ 120
YN + LS DY G+LA+EMGLGKT+E+L+ I +R+ D ++ FID +
Sbjct: 369 YNQYRKE-RLSGDYP--VCAKGVLAEEMGLGKTIEILSLILLNRRKLKDSEATFIDDENR 425
Query: 121 VTDDQKVNL 129
K L
Sbjct: 426 TITKTKTTL 434
Score = 42 (19.8 bits), Expect = 1.3e-16, Sum P(3) = 1.3e-16
Identities = 17/72 (23%), Positives = 34/72 (47%)
Query: 844 VHCELDESFQDYEARLFRLKKSQGDIASAEEAVDLQKKNSS--LNRFYWYLSQP-----N 896
++ E D DY + L + + ++ E ++ Q KN + L+ + +P +
Sbjct: 967 INIEFDHK-NDYSSNL-AVSRCFKSLSKLIEGLNEQTKNFNELLDELLIIIYEPVHRTED 1024
Query: 897 KNSTSSSVGNEE 908
+ST+ +GNEE
Sbjct: 1025 DDSTNKIIGNEE 1036
Score = 41 (19.5 bits), Expect = 6.7e-11, Sum P(3) = 6.7e-11
Identities = 18/75 (24%), Positives = 29/75 (38%)
Query: 15 PYQRRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYSTLFYNPFSGSLS-LSP 73
P+QR + WM+ +E G L +DF++ Y Y + S + P
Sbjct: 293 PFQRESVEWMLIKE-GHGNSLSDTPTVIDEVGL---IDFMNEYYAYGYELIARSPDEVGP 348
Query: 74 DYTSSYVFGGILADE 88
+ + G IL E
Sbjct: 349 SLLWNKLTGYILTTE 363
Score = 39 (18.8 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 120 QVTDDQKVNLRRLKRERVE 138
Q D KVNL +RE VE
Sbjct: 282 QSIPDLKVNLLPFQRESVE 300
>DICTYBASE|DDB_G0282115 [details] [associations]
symbol:DDB_G0282115 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
dictyBase:DDB_G0282115 Pfam:PF00097 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AAFI02000045 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:XP_640361.1
ProteinModelPortal:Q54SZ4 EnsemblProtists:DDB0233436 GeneID:8623416
KEGG:ddi:DDB_G0282115 InParanoid:Q54SZ4 OMA:DIVITTH
ProtClustDB:CLSZ2430494 Uniprot:Q54SZ4
Length = 1640
Score = 260 (96.6 bits), Expect = 1.6e-15, Sum P(4) = 1.6e-15
Identities = 78/256 (30%), Positives = 126/256 (49%)
Query: 223 ATLIVCPAPILAQWDAEITRHTRP---GSLKTCIYEGA-RNSSLSDTSIMDISELVGADI 278
ATLI+CP +++QW +EI +H +P L+ Y GA R LS +D++ + DI
Sbjct: 1045 ATLIICPPSLVSQWKSEIKKHLKPDYFNKLEIFEYHGANRKKKLSG---VDLNLM---DI 1098
Query: 279 VLTTYDVLK-EDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 337
V+TT++ E ++ D +P LLT I WWR+ +DE+Q+ +
Sbjct: 1099 VITTHNTFGIEFKKYEEDMQSAYTNNANGNDGSIPLPALLT-IHWWRVIIDESQVCKIKT 1157
Query: 338 AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSIS-RWWIEVIRDPYENG 396
+ L A H+WC++GTPI LDD+Y L FL P + + W ++I P +N
Sbjct: 1158 LIFKGLQ-NLDAIHKWCLSGTPISNYLDDIYPSLHFLNCYPIAQDLKTWRKLIDRP-KN- 1214
Query: 397 DVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGY 456
+E K I+ R K + D +LP + + + +L F+ E Y +T
Sbjct: 1215 ----LELLKKVINPILLRREKSEILD-FKLPKKNKEIVYLDFNENEADDY----DTLFSV 1265
Query: 457 AREVIQRL--KDNILK 470
A+E +Q++ + ILK
Sbjct: 1266 AQETLQKISCRGGILK 1281
Score = 47 (21.6 bits), Expect = 1.6e-15, Sum P(4) = 1.6e-15
Identities = 20/85 (23%), Positives = 46/85 (54%)
Query: 857 ARLFRLKKSQGDIASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKR-RDVR 915
A L KKS+ +++ + +D+++++ N+ + +N + + N+ I+R R+ +
Sbjct: 1386 ANLNNSKKSKTNLSKKSQYLDIERQDQLYNQ----TERQFQNELHNRL-NQLIERQRENQ 1440
Query: 916 ETVVVSKSPS----ELEVILGVIKN 936
E +SK S +++ +LG I+N
Sbjct: 1441 EAKQMSKIDSLFSTKVKTLLGDIQN 1465
Score = 42 (19.8 bits), Expect = 1.6e-15, Sum P(4) = 1.6e-15
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 493 AKLLNSLLKLRQACCH 508
A +L LL+LRQ C H
Sbjct: 1284 ATVLALLLRLRQCCDH 1299
Score = 37 (18.1 bits), Expect = 1.6e-15, Sum P(4) = 1.6e-15
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 831 CRICYGVGDGPICVHCELD---ESFQD 854
C C + P+ HC D + F+D
Sbjct: 1314 CNSCKDIAVNPVKNHCGHDFCLDCFED 1340
>ASPGD|ASPL0000030172 [details] [associations]
symbol:AN5483 species:162425 "Emericella nidulans"
[GO:0045005 "maintenance of fidelity involved in DNA-dependent DNA
replication" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:BN001305 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000094 OrthoDB:EOG4NZZ2M
RefSeq:XP_663087.1 ProteinModelPortal:Q5B1U7
EnsemblFungi:CADANIAT00003605 GeneID:2871773 KEGG:ani:AN5483.2
HOGENOM:HOG000216663 OMA:LETIRPD Uniprot:Q5B1U7
Length = 1184
Score = 218 (81.8 bits), Expect = 2.7e-15, Sum P(4) = 2.7e-15
Identities = 80/301 (26%), Positives = 139/301 (46%)
Query: 224 TLIVCPAPILAQWDAEITRHTRPGS-LKTCIYEGARNSSLSDTSIMDISELVGADIVLTT 282
TLI+ P ++ QW EI + PG L+ I G + TS D+ + D+VLTT
Sbjct: 524 TLIIAPVALMQQWKREIEKMLSPGHRLQVYILHGDKGR----TSFSDLKKY---DVVLTT 576
Query: 283 YDVLKEDLS----HDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAA 338
+ +L +L ++ +G ++ +P L W+R+ +DEAQ +++ A
Sbjct: 577 FGMLASELKRVIKYEQLLKDGAEEPTLTRQYLKTLPCLGPTSKWYRVIIDEAQCIKNRAT 636
Query: 339 AATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS-ISRW---WIEVIRDPYE 394
+ RL +RWC++GTP+ +++L+ LL+FL+ P++ + R+ + ++ +
Sbjct: 637 QSAIACCRLNTTYRWCMSGTPMMNNVEELHSLLKFLRIRPYANLDRFKRDFSAPLKTNNK 696
Query: 395 NGDVGAMEFTHKFFKEIMCRS---SKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHE 451
+ AM K ++ R SK+ +PP+ FS + H S+ E
Sbjct: 697 HLQEKAMTQLRILLKAVLLRRTKHSKIDGKPIFDIPPR--------FSE-KVHAVFSEDE 747
Query: 452 TCVGYAREVIQRLKDN-ILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQ 510
+ A E +L+ N L+ G S+ L +L LL+LRQACCHP
Sbjct: 748 LELYKALEAKTQLQFNRYLEAGTVGRNYSNIL------------VL--LLRLRQACCHPH 793
Query: 511 V 511
+
Sbjct: 794 L 794
Score = 82 (33.9 bits), Expect = 2.7e-15, Sum P(4) = 2.7e-15
Identities = 16/29 (55%), Positives = 24/29 (82%)
Query: 82 GGILADEMGLGKTVELLACIFAHRKPASD 110
GGILAD+MGLGKT++ +A + + +P+SD
Sbjct: 492 GGILADDMGLGKTIQAIALMVS--RPSSD 518
Score = 42 (19.8 bits), Expect = 2.7e-15, Sum P(4) = 2.7e-15
Identities = 12/62 (19%), Positives = 23/62 (37%)
Query: 17 QRRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYT 76
QRRA W+ +R++ + P + ++ P +L P ++
Sbjct: 199 QRRAEQWLKERKEQERRDAEFARHLMSASPSAQTLSYISRAEPP--TPTRENLPSIPQFS 256
Query: 77 SS 78
SS
Sbjct: 257 SS 258
Score = 37 (18.1 bits), Expect = 2.7e-15, Sum P(4) = 2.7e-15
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 647 VSREENSDFTDAEDPSGHLSDLSENGFNGD 676
+ + + D TD D LSD N + D
Sbjct: 921 IKEDGDRDDTDDSDEGATLSDFISNDSDCD 950
>SGD|S000005717 [details] [associations]
symbol:ULS1 "Protein involved in proteolytic control of
sumoylated substrates" species:4932 "Saccharomyces cerevisiae"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0007533 "mating type switching" evidence=IMP]
[GO:0006333 "chromatin assembly or disassembly"
evidence=IGI;IMP;IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0032183 "SUMO binding" evidence=IPI] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SGD:S000005717
Prosite:PS00518 GO:GO:0005739 GO:GO:0005524 GO:GO:0005730
EMBL:BK006948 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008094 GO:GO:0007533 GeneTree:ENSGT00700000104545
EMBL:Z75099 PIR:S67083 RefSeq:NP_014834.1 ProteinModelPortal:Q08562
SMR:Q08562 DIP:DIP-996N IntAct:Q08562 MINT:MINT-426553
STRING:Q08562 PaxDb:Q08562 EnsemblFungi:YOR191W GeneID:854363
KEGG:sce:YOR191W CYGD:YOR191w HOGENOM:HOG000065999 OMA:NENMNMS
OrthoDB:EOG4NZZ2M NextBio:976476 Genevestigator:Q08562
GermOnline:YOR191W Uniprot:Q08562
Length = 1619
Score = 198 (74.8 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 92/377 (24%), Positives = 157/377 (41%)
Query: 225 LIVCPAPILAQWDAEI-TRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTY 283
LIV P +L W E+ T+ + T I+ G+ N + +L D VL +Y
Sbjct: 997 LIVAPVSVLRVWKGELETKVKKRAKFTTFIFGGSGNGKVKHWR-----DLARYDAVLVSY 1051
Query: 284 DVLKEDLS-HDSDRHEGDRRFMRFQKRYPVIPTLLTR------IF-----WWRICLDEAQ 331
L + H + +G++ + + L T F ++RI LDE Q
Sbjct: 1052 QTLANEFKKHWPKKLDGEQNQLPAVPHIQALNRLKTSNEYYSPFFCNDSTFYRILLDEGQ 1111
Query: 332 MVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF--------SISR 383
+++ A++ + +RW ++GTPIQ +D+LY L+RFL+ P+ I R
Sbjct: 1112 NIKNKNTRASKACCTINGMYRWVLSGTPIQNSMDELYSLIRFLRIPPYHKEQRFKLDIGR 1171
Query: 384 WWIEVIRDPYENGD-VGAMEFTHKFFKEIMCRSSKVHVSDE---LQLPPQEECVSWLTFS 439
++ + Y+N D A+ IM R SK D L+LPP+ V
Sbjct: 1172 FFQRNKQYQYDNEDRKNALRKVRVLLNAIMLRRSKADKIDGKPLLELPPKIVEVDESRLK 1231
Query: 440 PIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSL 499
E FY + Q L +L + G SS +L L
Sbjct: 1232 GEELKFYTALESKN--------QALAKKLLNNSTRGSYSS---------------VLTLL 1268
Query: 500 LKLRQACCHPQVGSSGLRSLQQSPLSM-----DEILMVLIGKTKIEGEEALRKLVMALNG 554
L+LRQACCH ++ G + + + ++ D+ L + T + GE A +++ ++N
Sbjct: 1269 LRLRQACCHSELVVMGEKKAEGTKVANGKSFEDDWLRLYYKITHMSGE-AQAQVITSMNS 1327
Query: 555 LAGIALIEKNLSQAVSL 571
+ +E+ +A+S+
Sbjct: 1328 MTCFWCMEQLEPEAMSV 1344
Score = 83 (34.3 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 82 GGILADEMGLGKTVELLACIFAHRKPAS 109
GG+LAD+MGLGKT++ +A + A+R S
Sbjct: 964 GGLLADDMGLGKTIQAIALMLANRSEES 991
>UNIPROTKB|G4MPA7 [details] [associations]
symbol:MGG_07014 "DNA repair protein RAD16" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001841 InterPro:IPR018957 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Pfam:PF00097
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
EMBL:CM001231 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K15083 RefSeq:XP_003709772.1
ProteinModelPortal:G4MPA7 EnsemblFungi:MGG_07014T0 GeneID:2685187
KEGG:mgr:MGG_07014 Uniprot:G4MPA7
Length = 986
Score = 217 (81.4 bits), Expect = 3.2e-14, Sum P(5) = 3.2e-14
Identities = 54/166 (32%), Positives = 91/166 (54%)
Query: 215 TDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELV 274
+D P A +L++ P L QW +EI +T G+LKT +Y G+ + T M +EL
Sbjct: 425 SDWP-AKKPSLVLAPPVALMQWMSEIQSYTE-GTLKTIVYHGSN----AKTKKMTKAELK 478
Query: 275 GADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 334
G D+++ +Y+ L+ S + + +G + K +LL I + R+ LDEA ++
Sbjct: 479 GYDVIIMSYNSLQ---SMYAKQEKGVSKKDGIYKE----KSLLHSIDFHRVILDEAHYIK 531
Query: 335 SNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 380
S ++ L L +RWC+TGTP+Q ++ + + L+RFLK PF+
Sbjct: 532 SRTTMTSKACLALKTTYRWCLTGTPLQNRIGEFFSLVRFLKIEPFA 577
Score = 72 (30.4 bits), Expect = 3.2e-14, Sum P(5) = 3.2e-14
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 82 GGILADEMGLGKTVELLACIFAHRKPASDDSIFI 115
GG+L DEMGLGKT++ ++ + + PA S+ +
Sbjct: 404 GGLLGDEMGLGKTIQAVSLVMSDW-PAKKPSLVL 436
Score = 41 (19.5 bits), Expect = 3.2e-14, Sum P(5) = 3.2e-14
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 410 EIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEE 443
+IM R K D ++LP +E + F +E+
Sbjct: 643 KIMLRRQKKDHMDSMELPLKEIIIDRQFFGEVEK 676
Score = 37 (18.1 bits), Expect = 3.2e-14, Sum P(5) = 3.2e-14
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 873 EEAVDLQKKNSSLNR 887
E+ ++ KKNS +NR
Sbjct: 790 EQDQEMTKKNSIINR 804
Score = 37 (18.1 bits), Expect = 3.2e-14, Sum P(5) = 3.2e-14
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 988 TTRLHLKEDDNDTSVDALSPDEL 1010
T ++ + +D ++D+L P++L
Sbjct: 957 TKMINSTVNSDDVALDSLEPEDL 979
Score = 37 (18.1 bits), Expect = 8.0e-14, Sum P(5) = 8.0e-14
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 476 HAS--SDALYNPIITHAEAAKLLNSLLKLR 503
H S + L NPI T+ K + KLR
Sbjct: 609 HVSVFNQELLNPIQTYGRTLKGAEAFRKLR 638
>GENEDB_PFALCIPARUM|PFL2440w [details] [associations]
symbol:PFL2440w "DNA repair protein rhp16,
putative" species:5833 "Plasmodium falciparum" [GO:0006289
"nucleotide-excision repair" evidence=ISS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001510 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00645 Pfam:PF13639 PROSITE:PS50064
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 EMBL:AE014188 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006289 KO:K15083 RefSeq:XP_001350892.1
ProteinModelPortal:Q8I4S6 IntAct:Q8I4S6 MINT:MINT-1665888
EnsemblProtists:PFL2440w:mRNA GeneID:811540 KEGG:pfa:PFL2440w
EuPathDB:PlasmoDB:PF3D7_1250800 HOGENOM:HOG000283588 OMA:KKQLVFD
ProtClustDB:CLSZ2514966 Uniprot:Q8I4S6
Length = 1647
Score = 150 (57.9 bits), Expect = 1.5e-13, Sum P(6) = 1.5e-13
Identities = 26/65 (40%), Positives = 44/65 (67%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYA-KHRWCITGTPIQRKLDDLYGLLRFLK 375
L +I+W RI LDEA +++ + T+ L L +RWC+TGTP+Q ++ +LY L+RF++
Sbjct: 1030 LHQIYWNRIILDEAHRIKNRNTSTTQSILNLKCCGYRWCLTGTPLQNRISELYSLIRFIE 1089
Query: 376 SSPFS 380
P++
Sbjct: 1090 FYPYA 1094
Score = 95 (38.5 bits), Expect = 1.5e-13, Sum P(6) = 1.5e-13
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G TLI+ P + QW +EI + L +Y G NS + I D EL+ DIV+T
Sbjct: 441 GQTLIIAPVAAVMQWKSEIEKFVDENILNVYVYHG--NSKI----ISD-EELIKYDIVIT 493
Query: 282 TYDVLKEDLSHDSDRHE 298
+Y V++ + ++H+
Sbjct: 494 SYAVVEVNFRKIVNKHK 510
Score = 78 (32.5 bits), Expect = 1.5e-13, Sum P(6) = 1.5e-13
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 78 SYVFGGILADEMGLGKTVELLACIFAHR 105
S V GGILADEMG+GKT++ + I +
Sbjct: 243 SNVKGGILADEMGMGKTIQAITLILCQK 270
Score = 50 (22.7 bits), Expect = 1.5e-13, Sum P(6) = 1.5e-13
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 440 PIEEHFYQSQHETCVGYAR-EVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKL 495
PI+ Y+ + + + Y + EV+ D IL R G SD P+I KL
Sbjct: 1139 PIQSFGYRGEGLSGMSYLKNEVL----DKILLRRTKGERKSDINLKPLIIKIRKDKL 1191
Score = 45 (20.9 bits), Expect = 1.5e-13, Sum P(6) = 1.5e-13
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 16 YQRRAAYWMVQRE 28
YQ+ YWM+ +E
Sbjct: 229 YQKEGIYWMINQE 241
Score = 38 (18.4 bits), Expect = 1.5e-13, Sum P(6) = 1.5e-13
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 493 AKLLNSLLKLRQACCHP 509
A + + L +LRQA HP
Sbjct: 1224 AHIFDLLSRLRQAADHP 1240
Score = 38 (18.4 bits), Expect = 4.0e-08, Sum P(6) = 4.0e-08
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 113 IFI-DTAVQVTDDQKVNLRRLK 133
I++ +T +Q T+ +K+N+ LK
Sbjct: 740 IYVTNTTIQNTELEKLNMGELK 761
>UNIPROTKB|Q8I4S6 [details] [associations]
symbol:PFL2440w "DNA repair protein rhp16, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0006289
"nucleotide-excision repair" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001510 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00645 Pfam:PF13639 PROSITE:PS50064
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 EMBL:AE014188 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006289 KO:K15083 RefSeq:XP_001350892.1
ProteinModelPortal:Q8I4S6 IntAct:Q8I4S6 MINT:MINT-1665888
EnsemblProtists:PFL2440w:mRNA GeneID:811540 KEGG:pfa:PFL2440w
EuPathDB:PlasmoDB:PF3D7_1250800 HOGENOM:HOG000283588 OMA:KKQLVFD
ProtClustDB:CLSZ2514966 Uniprot:Q8I4S6
Length = 1647
Score = 150 (57.9 bits), Expect = 1.5e-13, Sum P(6) = 1.5e-13
Identities = 26/65 (40%), Positives = 44/65 (67%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYA-KHRWCITGTPIQRKLDDLYGLLRFLK 375
L +I+W RI LDEA +++ + T+ L L +RWC+TGTP+Q ++ +LY L+RF++
Sbjct: 1030 LHQIYWNRIILDEAHRIKNRNTSTTQSILNLKCCGYRWCLTGTPLQNRISELYSLIRFIE 1089
Query: 376 SSPFS 380
P++
Sbjct: 1090 FYPYA 1094
Score = 95 (38.5 bits), Expect = 1.5e-13, Sum P(6) = 1.5e-13
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G TLI+ P + QW +EI + L +Y G NS + I D EL+ DIV+T
Sbjct: 441 GQTLIIAPVAAVMQWKSEIEKFVDENILNVYVYHG--NSKI----ISD-EELIKYDIVIT 493
Query: 282 TYDVLKEDLSHDSDRHE 298
+Y V++ + ++H+
Sbjct: 494 SYAVVEVNFRKIVNKHK 510
Score = 78 (32.5 bits), Expect = 1.5e-13, Sum P(6) = 1.5e-13
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 78 SYVFGGILADEMGLGKTVELLACIFAHR 105
S V GGILADEMG+GKT++ + I +
Sbjct: 243 SNVKGGILADEMGMGKTIQAITLILCQK 270
Score = 50 (22.7 bits), Expect = 1.5e-13, Sum P(6) = 1.5e-13
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 440 PIEEHFYQSQHETCVGYAR-EVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKL 495
PI+ Y+ + + + Y + EV+ D IL R G SD P+I KL
Sbjct: 1139 PIQSFGYRGEGLSGMSYLKNEVL----DKILLRRTKGERKSDINLKPLIIKIRKDKL 1191
Score = 45 (20.9 bits), Expect = 1.5e-13, Sum P(6) = 1.5e-13
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 16 YQRRAAYWMVQRE 28
YQ+ YWM+ +E
Sbjct: 229 YQKEGIYWMINQE 241
Score = 38 (18.4 bits), Expect = 1.5e-13, Sum P(6) = 1.5e-13
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 493 AKLLNSLLKLRQACCHP 509
A + + L +LRQA HP
Sbjct: 1224 AHIFDLLSRLRQAADHP 1240
Score = 38 (18.4 bits), Expect = 4.0e-08, Sum P(6) = 4.0e-08
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 113 IFI-DTAVQVTDDQKVNLRRLK 133
I++ +T +Q T+ +K+N+ LK
Sbjct: 740 IYVTNTTIQNTELEKLNMGELK 761
>ASPGD|ASPL0000008250 [details] [associations]
symbol:AN10794 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:BN001301 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EnsemblFungi:CADANIAT00006774
OMA:LADMMGL Uniprot:C8V1S3
Length = 1170
Score = 197 (74.4 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
Identities = 58/202 (28%), Positives = 95/202 (47%)
Query: 249 LKTCIYEGARNSSL--SDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRF 306
+K + +GA S + + + EL D+V+TTY ++ +LS R G
Sbjct: 602 VKEHLRDGALTSYVFHGSSRTTSVDELSKYDLVITTYSIVLSELSGRGSRRAGSS----- 656
Query: 307 QKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDD 366
P LT++ +RI LDEA + +AA T+ RL A+ RW +TGTPIQ +LDD
Sbjct: 657 -------P--LTKMNMFRIVLDEAHTIREQSAAQTQAIFRLNAQRRWSVTGTPIQNRLDD 707
Query: 367 LYGLLRFLKSSPFSI-SRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQ 425
L + +FL P+ SR+ + ++ ++ GD + R V D++
Sbjct: 708 LLSVTKFLGIYPYDDRSRFNMHIL-SRFKTGDATVLASLRVLVDSFTLR----RVKDKID 762
Query: 426 LPPQEECVSWLTFSPIEEHFYQ 447
LP + + + L FS E ++
Sbjct: 763 LPARHDKIVMLEFSESEAQLHE 784
Score = 69 (29.3 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 82 GGILADEMGLGKTVELLACIFAHRKPASD 110
GG+LAD MGLGKT+ +L+ + + A +
Sbjct: 535 GGLLADMMGLGKTLSILSLVISSLAQAQE 563
>UNIPROTKB|G4NIT2 [details] [associations]
symbol:MGG_12155 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 EMBL:CM001236 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_003719705.1 ProteinModelPortal:G4NIT2
EnsemblFungi:MGG_12155T0 GeneID:2677543 KEGG:mgr:MGG_12155
Uniprot:G4NIT2
Length = 1430
Score = 165 (63.1 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 45/160 (28%), Positives = 80/160 (50%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGAD-IVL 280
G TLIV PA + QW +E+ +H C + R SD + I E++ + +V+
Sbjct: 572 GPTLIVAPAAAIEQWKSELKKH--------CTF-AKRIWHYSDKNENQIPEVLKKEKVVI 622
Query: 281 TTYDVLKEDLSHDSD--RHEGDRRFM---RFQKRYPVIPTLLTRIFWWRICLDEAQMVES 335
+Y + + D R G + + R Q + L + W R+ LDEA +++
Sbjct: 623 ASYQAIAKAFPSDEALRRINGTKLGLEAWREQLTEKMGDAFL--VDWHRVVLDEAHAIKN 680
Query: 336 NAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLK 375
+ + ++ + L +KHRW ++GTPI +++LY +RFL+
Sbjct: 681 HLSRTSKACVHLRSKHRWALSGTPIHNTIEELYPYMRFLR 720
Score = 94 (38.1 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 60 LFYNPFSG-SLSLSPDYTSSYVFGGILADEMGLGKTVELLACI 101
LF + G L +++ +GGILAD+MGLGKTV++LAC+
Sbjct: 523 LFNHQLVGVHFMLGKEFSPLGPYGGILADQMGLGKTVQMLACM 565
>DICTYBASE|DDB_G0281949 [details] [associations]
symbol:helE "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
dictyBase:DDB_G0281949 Prosite:PS00518 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 EMBL:AAFI02000044 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
ProtClustDB:CLSZ2430494 RefSeq:XP_640427.1
ProteinModelPortal:Q54T24 EnsemblProtists:DDB0215339 GeneID:8623380
KEGG:ddi:DDB_G0281949 InParanoid:Q54T24 OMA:NSFCDKI Uniprot:Q54T24
Length = 1540
Score = 183 (69.5 bits), Expect = 8.0e-12, Sum P(3) = 8.0e-12
Identities = 62/241 (25%), Positives = 110/241 (45%)
Query: 233 LAQWDAEITRHTRPGSLKTCIYEGAR---NSSLSDTSIMDISELVGADIVLTTYDVLKED 289
L + D T H + S++ YE R +SS TS++ I L+ D+++TT
Sbjct: 761 LIKADFVFTTH-QTFSIEYSFYEKERKNKSSSAISTSLIPIP-LINEDVIITTTTTTTTT 818
Query: 290 LSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYA 349
++++ + +++ + ++ +IP L I WWR+ +DE+ + + + L +
Sbjct: 819 TNNNNSNNNNNQK--QISSKFTIIPPPLLCIHWWRVIIDESHKFKHKSLFFRSLQ-NLDS 875
Query: 350 KHRWCITGTPIQRKLDDLYGLLRFLKSSPFS--ISRW--WIEVIRDPYENGDVGAMEFTH 405
+RWC+TGTP Q DL+ +L FL P + I+ W +E I+D E +
Sbjct: 876 VNRWCLTGTPYQNNCTDLFPMLYFLNVFPIAKNIATWRKLVESIQDQSEKKKI-----LK 930
Query: 406 KFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLK 465
K+ I+ SK V + Q EE + L F E Y + + E +R++
Sbjct: 931 KYLNPIILSRSKKDVRIQ-QNQVYEEIIE-LEFDQNESDAYSLVFKD----SNETFERIQ 984
Query: 466 D 466
D
Sbjct: 985 D 985
Score = 80 (33.2 bits), Expect = 8.0e-12, Sum P(3) = 8.0e-12
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 59 TLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLA 99
T +YN F +++ + GG+L D+MGLGKT+ +L+
Sbjct: 615 TFYYNSFCDKITMFEPKGRKSISGGMLCDKMGLGKTLMILS 655
Score = 43 (20.2 bits), Expect = 8.0e-12, Sum P(3) = 8.0e-12
Identities = 20/82 (24%), Positives = 35/82 (42%)
Query: 847 ELDESFQDYEARLFRLKKSQGDIASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGN 906
E D+ D E LF+ S +S+ ++ N++ N + N N+ +++ N
Sbjct: 1193 EDDDDDDDKEKLLFKDDLSFLSSSSSSSSIKNNDNNNNNNNNNNNNNNNNNNNNNNNNNN 1252
Query: 907 EEIKRRDVRETVVVSKSPSELE 928
D + +V SK ELE
Sbjct: 1253 NNNNNSDYSDDLV-SKD-DELE 1272
Score = 41 (19.5 bits), Expect = 6.8e-08, Sum P(3) = 6.8e-08
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 69 LSLSPDYTSSYVF 81
+S PD+TSS +F
Sbjct: 28 ISTQPDFTSSNIF 40
Score = 39 (18.8 bits), Expect = 2.0e-11, Sum P(3) = 2.0e-11
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 995 EDDNDTSVDALSPDELASASVTNSS 1019
+DD+D L D+L+ S ++SS
Sbjct: 1195 DDDDDDKEKLLFKDDLSFLSSSSSS 1219
>FB|FBgn0037531 [details] [associations]
symbol:CG10445 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000381
GeneTree:ENSGT00700000104545 FlyBase:FBgn0037531 GenomeRNAi:40938
NextBio:821377 RefSeq:NP_001246974.1 RefSeq:NP_649751.2
UniGene:Dm.24034 ProteinModelPortal:Q9VHY2 IntAct:Q9VHY2
EnsemblMetazoa:FBtr0300685 EnsemblMetazoa:FBtr0304704 GeneID:40938
KEGG:dme:Dmel_CG10445 UCSC:CG10445-RA InParanoid:Q9VHY2 OMA:NLNVANH
OrthoDB:EOG40ZPCJ Bgee:Q9VHY2 Uniprot:Q9VHY2
Length = 945
Score = 122 (48.0 bits), Expect = 9.6e-12, Sum P(4) = 9.6e-12
Identities = 50/192 (26%), Positives = 83/192 (43%)
Query: 308 KRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDL 367
KRY L ++W R+ LDEA ++ ++ +L A W +TGTP+Q + D+
Sbjct: 433 KRYGNTSPLFA-VYWNRVILDEAHIIRNSKTNCCNSVCQLRAHCHWALTGTPVQNRGVDV 491
Query: 368 YGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSK--VHVSDELQ 425
+ LLRF+ F + W + + + +G K +M R +K + S ++
Sbjct: 492 FALLRFVNVPNFQDLQQWKKNLNESM----LGHRRLNF-IIKPLMLRRTKQKLQASGDMP 546
Query: 426 -LPPQEECVSWLTFSPIEEHFYQSQHETCVG-YAREVIQRLKDNI------LKRN---VP 474
LP + + + S E YQ + + ++QR K N L+R +
Sbjct: 547 ALPSLKIELICVQLSKTEMAVYQILSAISKKIFTQFLLQREKGNSDLNYYSLERTPQFIA 606
Query: 475 GHASSDALYNPI 486
GH S D YN I
Sbjct: 607 GHMS-DERYNEI 617
Score = 80 (33.2 bits), Expect = 9.6e-12, Sum P(4) = 9.6e-12
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 80 VFGGILADEMGLGKTVELLACIFA 103
+ GGILAD+MGLGKT+ ++A I A
Sbjct: 228 ISGGILADDMGLGKTLSMIALILA 251
Score = 76 (31.8 bits), Expect = 9.6e-12, Sum P(4) = 9.6e-12
Identities = 15/67 (22%), Positives = 31/67 (46%)
Query: 224 TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTY 283
TL+VCP ++ QW E+ +++ + G + I D+V+T+Y
Sbjct: 372 TLVVCPMSVMCQWAHEVASKVAQNAIRVLTFHGPNRHEIG------IEAFRSYDLVITSY 425
Query: 284 DVLKEDL 290
+++ +L
Sbjct: 426 NLVVNEL 432
Score = 66 (28.3 bits), Expect = 9.6e-12, Sum P(4) = 9.6e-12
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 495 LLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGE 542
+L LL+LRQ CCHP + LR L+ +++ V + + +EG+
Sbjct: 638 ILVLLLRLRQFCCHPGLMIGMLRGA----LTAEDVQNVKVDASDVEGQ 681
>ASPGD|ASPL0000049992 [details] [associations]
symbol:AN2256 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0000151 "ubiquitin
ligase complex" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K15711 HOGENOM:HOG000172619
EMBL:AACD01000037 RefSeq:XP_659860.1 ProteinModelPortal:Q5BB24
EnsemblFungi:CADANIAT00008948 GeneID:2874756 KEGG:ani:AN2256.2
OMA:IVGVRYY OrthoDB:EOG4G1QQQ Uniprot:Q5BB24
Length = 972
Score = 115 (45.5 bits), Expect = 4.6e-10, Sum P(4) = 4.6e-10
Identities = 37/131 (28%), Positives = 52/131 (39%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLK- 375
L + W R+ LDE + + + A L A RW +TGTPI L DLY +RFL
Sbjct: 515 LFSVKWRRVVLDEGHTIRNPRSKGFSAACALRADSRWALTGTPIVNTLKDLYSQIRFLGL 574
Query: 376 SSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSW 435
+ + V+ P + D + I R K L+LP V
Sbjct: 575 TGGLEDFAVFNSVLIRPLMSDDPDSRLLLQALMSTICLRRRKDMGFVNLRLPTLTSRVLR 634
Query: 436 LTFSPIEEHFY 446
+ F P E+ Y
Sbjct: 635 IKFHPHEKEKY 645
Score = 93 (37.8 bits), Expect = 4.6e-10, Sum P(4) = 4.6e-10
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 63 NPFSG-SLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDS 112
N F+ + + S S GGILAD+MGLGKT+++++ I ++ +P + +S
Sbjct: 390 NKFTNIATNFSTTAPPSLASGGILADDMGLGKTIQIISLILSNSQPKTKES 440
Score = 73 (30.8 bits), Expect = 4.6e-10, Sum P(4) = 4.6e-10
Identities = 21/73 (28%), Positives = 33/73 (45%)
Query: 223 ATLIVCPAPILAQWDAEITRHTRPGSL-KTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
ATLI+ P I++ W +I HT P + IY G D ++ D+V+T
Sbjct: 443 ATLIISPVGIMSNWRNQIQEHTNPEQAPRVLIYHGPGRKE--DANLDHY------DVVVT 494
Query: 282 TYDVLKEDLSHDS 294
+Y L + +S
Sbjct: 495 SYGTLATEYKTES 507
Score = 47 (21.6 bits), Expect = 4.6e-10, Sum P(4) = 4.6e-10
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 495 LLNSLLKLRQACCHPQVGSSGLRSL-------QQSPLSMDEI--LMVLIGKTKIEGEE 543
LL +L+LRQ C H + + L L Q PL+ D I L ++ + +IE +E
Sbjct: 672 LLEVILRLRQVCNHWALAKNRLDKLAAILDKHQTVPLTPDNIKALQDML-QIRIESQE 728
>UNIPROTKB|Q8EGF3 [details] [associations]
symbol:SO_1651 "Helicase/SNF2 family domain protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR007527 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 124 (48.7 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 54/234 (23%), Positives = 104/234 (44%)
Query: 325 ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRW 384
I LDEAQ +++ A ++M L + + C+TGTP++ L +L L+ F + +
Sbjct: 755 IVLDEAQQIKNAQAKVSQMIKALQSPFKLCLTGTPLENHLGELKSLMDFCLPGLLGTTAY 814
Query: 385 WIEVIRDPYEN-GDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEE 443
+ + R+ E GD ++ + + R +K V EL PP+ E L +
Sbjct: 815 FNKEFRNRIERYGDSEQVKVLSQRIAPFVLRRTKAEVVTEL--PPKTEIYQSLELEKDQR 872
Query: 444 HFYQSQHETCVGYAREVI--QRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLK 501
+ Y+S + RE+ Q + + ++ A +P + E A+ + + K
Sbjct: 873 NLYESIRLSMEKKIRELFATQGVAGSHIEFLDALLKLRQACCDPRLVKLEQAQKVKNNAK 932
Query: 502 LRQACCH-PQVGSSGLRSLQQSPLS-----MDEILMVL-IGKTKIEGEEALRKL 548
L + P++ G + L S + ++E+L L I +K+ G+ LR++
Sbjct: 933 LNWLSQNLPEMVQEGRKILIFSQFTSMLILIEELLQSLEIDYSKLTGQTRLRQV 986
Score = 84 (34.6 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 75 YTSSYVFGGILADEMGLGKTVELLACIFAHRK 106
+ Y GGILAD+MGLGKT++ LA + ++
Sbjct: 645 FLKEYQLGGILADDMGLGKTIQTLAFLLKQKQ 676
Score = 73 (30.8 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 224 TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTY 283
+LI+CP ++ W E + P SL + GA+ L + +SE D+V+TTY
Sbjct: 687 SLIICPTSLVGNWAKEAAKFA-P-SLTLAVIHGAQRGPL----LARLSEF---DVVVTTY 737
Query: 284 DVLKED 289
++ D
Sbjct: 738 PLMVRD 743
>TIGR_CMR|SO_1651 [details] [associations]
symbol:SO_1651 "Snf2 family protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 124 (48.7 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 54/234 (23%), Positives = 104/234 (44%)
Query: 325 ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRW 384
I LDEAQ +++ A ++M L + + C+TGTP++ L +L L+ F + +
Sbjct: 755 IVLDEAQQIKNAQAKVSQMIKALQSPFKLCLTGTPLENHLGELKSLMDFCLPGLLGTTAY 814
Query: 385 WIEVIRDPYEN-GDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEE 443
+ + R+ E GD ++ + + R +K V EL PP+ E L +
Sbjct: 815 FNKEFRNRIERYGDSEQVKVLSQRIAPFVLRRTKAEVVTEL--PPKTEIYQSLELEKDQR 872
Query: 444 HFYQSQHETCVGYAREVI--QRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLK 501
+ Y+S + RE+ Q + + ++ A +P + E A+ + + K
Sbjct: 873 NLYESIRLSMEKKIRELFATQGVAGSHIEFLDALLKLRQACCDPRLVKLEQAQKVKNNAK 932
Query: 502 LRQACCH-PQVGSSGLRSLQQSPLS-----MDEILMVL-IGKTKIEGEEALRKL 548
L + P++ G + L S + ++E+L L I +K+ G+ LR++
Sbjct: 933 LNWLSQNLPEMVQEGRKILIFSQFTSMLILIEELLQSLEIDYSKLTGQTRLRQV 986
Score = 84 (34.6 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 75 YTSSYVFGGILADEMGLGKTVELLACIFAHRK 106
+ Y GGILAD+MGLGKT++ LA + ++
Sbjct: 645 FLKEYQLGGILADDMGLGKTIQTLAFLLKQKQ 676
Score = 73 (30.8 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 224 TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTY 283
+LI+CP ++ W E + P SL + GA+ L + +SE D+V+TTY
Sbjct: 687 SLIICPTSLVGNWAKEAAKFA-P-SLTLAVIHGAQRGPL----LARLSEF---DVVVTTY 737
Query: 284 DVLKED 289
++ D
Sbjct: 738 PLMVRD 743
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 134 (52.2 bits), Expect = 1.8e-09, Sum P(5) = 1.8e-09
Identities = 39/135 (28%), Positives = 65/135 (48%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L R+ W I +DEA +++ +A +++ Y+K+R ITGTP+Q L +L+ LL FL
Sbjct: 301 LKRLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHELWALLNFLLP 360
Query: 377 SPFSISRW---WIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECV 433
F S W E ++ E ++ H + R K V L LP E V
Sbjct: 361 DIFGDSELFDEWFE--QNNSEQDQEIVIQQLHSVLNPFLLRRVKADVEKSL-LPKIETNV 417
Query: 434 SWLTFSPIEEHFYQS 448
++ + ++ +Y+S
Sbjct: 418 -YVGMTDMQIQWYKS 431
Score = 65 (27.9 bits), Expect = 1.8e-09, Sum P(5) = 1.8e-09
Identities = 12/17 (70%), Positives = 16/17 (94%)
Query: 83 GILADEMGLGKTVELLA 99
GILADEMGLGKT++ ++
Sbjct: 205 GILADEMGLGKTLQTIS 221
Score = 60 (26.2 bits), Expect = 1.8e-09, Sum P(5) = 1.8e-09
Identities = 25/95 (26%), Positives = 42/95 (44%)
Query: 480 DALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKI 539
DA+ + +LLN +++LR+ C HP + G P + DE L+ GK I
Sbjct: 438 DAVNGAVGKREGKTRLLNIVMQLRKCCNHPYL-FEGAEP--GPPYTTDEHLIFNSGKMII 494
Query: 540 EGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKE 574
L KL+ L LI +S+ + + ++
Sbjct: 495 -----LDKLLKRLKEKGSRVLIFSQMSRLLDILED 524
Score = 57 (25.1 bits), Expect = 1.8e-09, Sum P(5) = 1.8e-09
Identities = 21/78 (26%), Positives = 35/78 (44%)
Query: 847 ELDESFQDYEARLFRLKKSQGDIASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGN 906
ELD + Q+ E F+ KK + S + D++ + S N +T G+
Sbjct: 797 ELD-ALQEKEQLYFK-KKVNYKVTSYDITGDIRNEGSDAEEEEG--EYKNAANTEGHKGH 852
Query: 907 EEIKRRDVRETVVVSKSP 924
EE+KRR E ++ +P
Sbjct: 853 EELKRRIEEEQEKINSAP 870
Score = 49 (22.3 bits), Expect = 1.8e-09, Sum P(5) = 1.8e-09
Identities = 17/68 (25%), Positives = 35/68 (51%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+ P L W E + T P ++ + G +++ +D + +I D+++T
Sbjct: 234 GPFLIIVPKSTLDNWRREFLKWT-P-NVNVLVLHGDKDTR-ADI-VRNIILEARFDVLIT 289
Query: 282 TYD-VLKE 288
+Y+ V++E
Sbjct: 290 SYEMVIRE 297
>UNIPROTKB|Q47YP1 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 151 (58.2 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 66/249 (26%), Positives = 111/249 (44%)
Query: 319 RIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 378
R F++ + LDEA +++ + L L A+H+ C+TGTP++ L + + FL
Sbjct: 784 RKFYYLV-LDEAHYIKNTKTKLYQAFLTLKAQHKLCLTGTPMENHLGEFWAQFNFLLPGF 842
Query: 379 FSISRWWIEVIRDPYE-NGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLT 437
R + ++ R P E +G++ + ++ K + R +K ++ EL PP+ E + L
Sbjct: 843 LGGQRQFTKLFRTPIEKHGELERKQLLNQRIKPFILRRTKDKIATEL--PPKTEIIQTLR 900
Query: 438 FSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASS--DALY-------NPIIT 488
+ Y+S V A + RLKD I + + DAL +P +
Sbjct: 901 IEGKQAELYES-----VRLAMD--SRLKDIIADKGLKRSQIEVLDALLKLRQVCNHPKLL 953
Query: 489 HAEAAKLLNSLLKLRQAC-CHPQVGSSGLRSL--QQ--SPLSM--DEILMVLIGKTKIEG 541
E AK +N KL P+ G + L Q S LS+ DE++ IG K+ G
Sbjct: 954 KLEGAKKVNQSAKLDYLMETLPEQIDEGRKILIFSQFTSMLSLIEDELIDAGIGYVKLTG 1013
Query: 542 EEALRKLVM 550
R+ V+
Sbjct: 1014 STTKRQEVV 1022
Score = 80 (33.2 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 29/111 (26%), Positives = 51/111 (45%)
Query: 189 RKKDMTNIVVRD---GEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTR 245
R+ + I+ D G+ I LIE + T LIV P ++ W EI + T
Sbjct: 677 REYQLNGILADDMGLGKTIQTLAHLLIEKQQGRL-TKPILIVAPTSVIFNWANEIDKFTP 735
Query: 246 PGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDR 296
S + ++ R+ ++ E DI++T+Y ++ +DL+H +DR
Sbjct: 736 QLSYQV-LHGNKRHEQFGCLEGVENGENQ-VDIIITSYALITKDLAHYTDR 784
Score = 76 (31.8 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 75 YTSSYVFGGILADEMGLGKTVELLACIFAHRK 106
+ Y GILAD+MGLGKT++ LA + ++
Sbjct: 675 FLREYQLNGILADDMGLGKTIQTLAHLLIEKQ 706
>TIGR_CMR|CPS_3404 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 151 (58.2 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 66/249 (26%), Positives = 111/249 (44%)
Query: 319 RIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 378
R F++ + LDEA +++ + L L A+H+ C+TGTP++ L + + FL
Sbjct: 784 RKFYYLV-LDEAHYIKNTKTKLYQAFLTLKAQHKLCLTGTPMENHLGEFWAQFNFLLPGF 842
Query: 379 FSISRWWIEVIRDPYE-NGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLT 437
R + ++ R P E +G++ + ++ K + R +K ++ EL PP+ E + L
Sbjct: 843 LGGQRQFTKLFRTPIEKHGELERKQLLNQRIKPFILRRTKDKIATEL--PPKTEIIQTLR 900
Query: 438 FSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASS--DALY-------NPIIT 488
+ Y+S V A + RLKD I + + DAL +P +
Sbjct: 901 IEGKQAELYES-----VRLAMD--SRLKDIIADKGLKRSQIEVLDALLKLRQVCNHPKLL 953
Query: 489 HAEAAKLLNSLLKLRQAC-CHPQVGSSGLRSL--QQ--SPLSM--DEILMVLIGKTKIEG 541
E AK +N KL P+ G + L Q S LS+ DE++ IG K+ G
Sbjct: 954 KLEGAKKVNQSAKLDYLMETLPEQIDEGRKILIFSQFTSMLSLIEDELIDAGIGYVKLTG 1013
Query: 542 EEALRKLVM 550
R+ V+
Sbjct: 1014 STTKRQEVV 1022
Score = 80 (33.2 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 29/111 (26%), Positives = 51/111 (45%)
Query: 189 RKKDMTNIVVRD---GEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTR 245
R+ + I+ D G+ I LIE + T LIV P ++ W EI + T
Sbjct: 677 REYQLNGILADDMGLGKTIQTLAHLLIEKQQGRL-TKPILIVAPTSVIFNWANEIDKFTP 735
Query: 246 PGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDR 296
S + ++ R+ ++ E DI++T+Y ++ +DL+H +DR
Sbjct: 736 QLSYQV-LHGNKRHEQFGCLEGVENGENQ-VDIIITSYALITKDLAHYTDR 784
Score = 76 (31.8 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 75 YTSSYVFGGILADEMGLGKTVELLACIFAHRK 106
+ Y GILAD+MGLGKT++ LA + ++
Sbjct: 675 FLREYQLNGILADDMGLGKTIQTLAHLLIEKQ 706
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 129 (50.5 bits), Expect = 2.3e-09, Sum P(5) = 2.3e-09
Identities = 34/132 (25%), Positives = 67/132 (50%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFLK 375
L + W I +DEA +++ ++ ++ +RL+ +++R ITGTP+Q + +L+ LL FL
Sbjct: 303 LKKFAWEYIIIDEAHRIKNEESSLAQV-IRLFNSRNRLLITGTPLQNNIHELWALLNFLL 361
Query: 376 SSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSW 435
F S + + ++ D + H+ + + R K V E L P++E +
Sbjct: 362 PDVFGDSEAFDQWFSGEGQDSDTVVQQL-HRVLRPFLLRRVKADV--EKSLLPKKEVNLY 418
Query: 436 LTFSPIEEHFYQ 447
L + ++ +YQ
Sbjct: 419 LKMTEMQRTWYQ 430
Score = 65 (27.9 bits), Expect = 2.3e-09, Sum P(5) = 2.3e-09
Identities = 12/17 (70%), Positives = 16/17 (94%)
Query: 83 GILADEMGLGKTVELLA 99
GILADEMGLGKT++ ++
Sbjct: 207 GILADEMGLGKTLQTIS 223
Score = 65 (27.9 bits), Expect = 2.3e-09, Sum P(5) = 2.3e-09
Identities = 17/72 (23%), Positives = 34/72 (47%)
Query: 221 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVL 280
TG L++ P L W E + T P + + +GA+ + + + E D+ +
Sbjct: 235 TGPHLVIVPKSTLDNWKREFGKWT-P-EVNVLVLQGAKEERAALIAERLVDE--SFDVCI 290
Query: 281 TTYDVLKEDLSH 292
T+Y+++ + SH
Sbjct: 291 TSYEMILREKSH 302
Score = 63 (27.2 bits), Expect = 2.3e-09, Sum P(5) = 2.3e-09
Identities = 26/96 (27%), Positives = 44/96 (45%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALN 553
+LLN +++LR+ C HP + G P + DE L+ GK + L KL+ L
Sbjct: 452 RLLNIVMQLRKCCNHPYL-FEGAEP--GPPYTTDEHLVYNSGKMVV-----LDKLLKRLK 503
Query: 554 GLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLD 589
LI +S+ + + ++ V E+ R+D
Sbjct: 504 AQGSRVLIFSQMSRVLDILED-YCVFREYKYS-RID 537
Score = 42 (19.8 bits), Expect = 2.3e-09, Sum P(5) = 2.3e-09
Identities = 26/111 (23%), Positives = 46/111 (41%)
Query: 781 RYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDG 840
RY I+ +I++ D E RK R + + K + ++ +I Y V
Sbjct: 913 RYTEIADYHKYIKTIEDGEEKLRKIEHQRKM-----LRKKMSQYRVPLQQLKINYSVSTT 967
Query: 841 PICVHCELDESFQDYEARLFRLKKSQGDIASAEEAVDLQKKNSSLNRFYWY 891
V+ E ++ F L +L K D E + + ++S+L RF W+
Sbjct: 968 NKKVYTEEEDRFL-----LVQLDKHGIDSDGIFETIRDEIRDSALFRFDWF 1013
Score = 42 (19.8 bits), Expect = 2.3e-09, Sum P(5) = 2.3e-09
Identities = 32/156 (20%), Positives = 61/156 (39%)
Query: 849 DESFQDYEARLFRLKKSQGDIASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSV-GNE 907
D + D EA L + + D A+ + Q+K + S+ N+ V G
Sbjct: 826 DATLSDREAEQ-ALDQQEIDNATPLTEEEQQRKQELSEEGF---SEWNRRDFQQFVNGCH 881
Query: 908 EIKRRDVR--ETVVVSKSPSELEVILGVI-KNYCK-TQLGR--EAISASSKQLHILEAMR 961
+ R D T VV K+ +E++ V + Y + + + I ++L +E R
Sbjct: 882 KFGRNDFEGIATEVVGKTAAEIKAYSKVFWQRYTEIADYHKYIKTIEDGEEKLRKIEHQR 941
Query: 962 KEYANARSLATAQAQFLRAHDEIRMATTRLHLKEDD 997
K S Q L+ + + +++ +E+D
Sbjct: 942 KMLRKKMSQYRVPLQQLKINYSVSTTNKKVYTEEED 977
Score = 37 (18.1 bits), Expect = 1.0e-06, Sum P(4) = 1.0e-06
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 536 KTKIEGEEALRKL 548
KT +GEE LRK+
Sbjct: 925 KTIEDGEEKLRKI 937
>TAIR|locus:504955712 [details] [associations]
symbol:AT3G54460 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001810 InterPro:IPR011124 Pfam:PF00176 Pfam:PF00271
Pfam:PF00646 Pfam:PF07496 PROSITE:PS50181 SMART:SM00184
SMART:SM00256 SMART:SM00490 GO:GO:0009506 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0008270
EMBL:AL138656 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 EMBL:AY091046 EMBL:BT004336
EMBL:AK221681 EMBL:AK227150 IPI:IPI00540934 PIR:T47605
RefSeq:NP_680129.1 UniGene:At.44814 ProteinModelPortal:Q9M1I1
SMR:Q9M1I1 PaxDb:Q9M1I1 PRIDE:Q9M1I1 EnsemblPlants:AT3G54460.1
GeneID:824611 KEGG:ath:AT3G54460 TAIR:At3g54460
HOGENOM:HOG000029561 InParanoid:Q9M1I1 OMA:NDPSHVE PhylomeDB:Q9M1I1
ProtClustDB:CLSN2690606 Genevestigator:Q9M1I1 Uniprot:Q9M1I1
Length = 1378
Score = 121 (47.7 bits), Expect = 9.3e-09, Sum P(4) = 9.3e-09
Identities = 40/144 (27%), Positives = 66/144 (45%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAAT--EMALRLYAKHRWCITGTPIQR----KLDDLYGL 370
L ++ W R+ LDE + S+ + +MA+ L A +RW +TGTP +L + L
Sbjct: 823 LIQVHWLRVMLDEGHTLGSSVSLTNKFQMAVSLTACNRWLLTGTPTPNTPNSQLSHIQPL 882
Query: 371 LRFLKSSPFSIS-RWWIEVIRDPYE-NGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPP 428
L+FL + + ++W I P+E + G + + + M S K D +PP
Sbjct: 883 LKFLHEEVYGENPKFWEAGILRPFEAEMEEGRLRLL-QLLQRCMISSRK---KDLQMIPP 938
Query: 429 QEECVSWLTFSPIEEHFYQSQHET 452
+ V++L F P Y ET
Sbjct: 939 CIKKVTYLNFLPGHARSYNELVET 962
Score = 84 (34.6 bits), Expect = 9.3e-09, Sum P(4) = 9.3e-09
Identities = 28/97 (28%), Positives = 42/97 (43%)
Query: 15 PYQRRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYSTLFY-NPFSGSLSLSP 73
P+Q+ A WM++RE+ PL + D D +S FY N +G +
Sbjct: 332 PHQQAAVGWMLERER---------KAEVSSHPLYLSFDTEDGFS--FYVNAVTGDIITEA 380
Query: 74 DYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASD 110
GG+ DE GLGKT+ L+ I + +D
Sbjct: 381 APMVKDFRGGMFCDEPGLGKTITALSLILKTQGTMAD 417
Score = 59 (25.8 bits), Expect = 9.3e-09, Sum P(4) = 9.3e-09
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 223 ATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTT 282
ATLIV P ++ W +I +H L+ ++ A + LS S+ D+V+TT
Sbjct: 755 ATLIVVPTNLVNHWLTQIQKHVCSDQLRILVW--ADHIELSPHSLA-----WDYDVVITT 807
Query: 283 YDVLKED 289
+ L +
Sbjct: 808 FSRLSAE 814
Score = 57 (25.1 bits), Expect = 9.3e-09, Sum P(4) = 9.3e-09
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 139 CICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRG 175
C +++S +W+QCD C W+ G S G
Sbjct: 562 CKRKGLTDSDVESDIWMQCDSCSKWRRIIDEGVSVTG 598
>CGD|CAL0000073 [details] [associations]
symbol:orf19.1667 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
PROSITE:PS51194 CGD:CAL0000073 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 RefSeq:XP_721625.1
RefSeq:XP_721744.1 ProteinModelPortal:Q5AJC4 GeneID:3636587
GeneID:3636769 KEGG:cal:CaO19.1667 KEGG:cal:CaO19.9236
Uniprot:Q5AJC4
Length = 1250
Score = 182 (69.1 bits), Expect = 9.8e-09, Sum P(2) = 9.8e-09
Identities = 72/317 (22%), Positives = 137/317 (43%)
Query: 58 STLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPAS---DDSIF 114
S +++ F+ + L D S GGIL + MGLGKT+ L+ I + + D+
Sbjct: 342 SNFYFDLFTKRIYLHAD-VMSLPLGGILGENMGLGKTLMCLSLINLTKYEITKIPSDNFL 400
Query: 115 IDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDI-CDAWQHAD--CVGY 171
+ +++ D+ K L + RE++ + S +K + + + +H C+
Sbjct: 401 LYNEIEIHDEIKT-LTEICREKI------IHSSIPWKLYNLPTSVTANLAKHPGYFCIDL 453
Query: 172 SPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVA----TGATLIV 227
+ K +RS H K ++ R+G C+ + + TLI+
Sbjct: 454 NDHEKNKRS------H--KSGF--LINRNGVDTCKRASRTTGTKSTSYLKLYMSSTTLII 503
Query: 228 CPAPILAQWDAEITRHTRPGSLKT-CIYEGARNSSLSDTSIMD---ISELVGADIVLTTY 283
P + QW EI H P LK C ++ + D + + ++ + + + L Y
Sbjct: 504 VPDNLFIQWVDEIAHHVEPNFLKILCAANYIKSDQIKDQFLPNPKFVNTIPESPVELIEY 563
Query: 284 DVLKEDLSHDSDRHEGDRRFMRFQKR-YPVIPTLLTRIFWWRICLDEAQMVESNAAAATE 342
DV+ S + R QK +P+L +++W R+ +DE +V+S + A +
Sbjct: 564 DVILISQSCLNKSFANKNR--NSQKNGNSQVPSL-RQVYWKRLIIDEGHIVQSKTSNAAQ 620
Query: 343 MALRLYAKHRWCITGTP 359
+ L+++ RW ++GTP
Sbjct: 621 ICRLLFSERRWAVSGTP 637
Score = 43 (20.2 bits), Expect = 9.8e-09, Sum P(2) = 9.8e-09
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 972 TAQAQFLRAHDEIRMATTRLHLKEDDNDT-SVDALSPDE 1009
T + +L+ DE+++ + LK ND S DA ++
Sbjct: 1184 TVKTLYLKGVDELKILSRNEKLKNAKNDKESFDAKEKED 1222
>UNIPROTKB|Q5AJC4 [details] [associations]
symbol:CaO19.1667 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
PROSITE:PS51194 CGD:CAL0000073 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 RefSeq:XP_721625.1
RefSeq:XP_721744.1 ProteinModelPortal:Q5AJC4 GeneID:3636587
GeneID:3636769 KEGG:cal:CaO19.1667 KEGG:cal:CaO19.9236
Uniprot:Q5AJC4
Length = 1250
Score = 182 (69.1 bits), Expect = 9.8e-09, Sum P(2) = 9.8e-09
Identities = 72/317 (22%), Positives = 137/317 (43%)
Query: 58 STLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPAS---DDSIF 114
S +++ F+ + L D S GGIL + MGLGKT+ L+ I + + D+
Sbjct: 342 SNFYFDLFTKRIYLHAD-VMSLPLGGILGENMGLGKTLMCLSLINLTKYEITKIPSDNFL 400
Query: 115 IDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDI-CDAWQHAD--CVGY 171
+ +++ D+ K L + RE++ + S +K + + + +H C+
Sbjct: 401 LYNEIEIHDEIKT-LTEICREKI------IHSSIPWKLYNLPTSVTANLAKHPGYFCIDL 453
Query: 172 SPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVA----TGATLIV 227
+ K +RS H K ++ R+G C+ + + TLI+
Sbjct: 454 NDHEKNKRS------H--KSGF--LINRNGVDTCKRASRTTGTKSTSYLKLYMSSTTLII 503
Query: 228 CPAPILAQWDAEITRHTRPGSLKT-CIYEGARNSSLSDTSIMD---ISELVGADIVLTTY 283
P + QW EI H P LK C ++ + D + + ++ + + + L Y
Sbjct: 504 VPDNLFIQWVDEIAHHVEPNFLKILCAANYIKSDQIKDQFLPNPKFVNTIPESPVELIEY 563
Query: 284 DVLKEDLSHDSDRHEGDRRFMRFQKR-YPVIPTLLTRIFWWRICLDEAQMVESNAAAATE 342
DV+ S + R QK +P+L +++W R+ +DE +V+S + A +
Sbjct: 564 DVILISQSCLNKSFANKNR--NSQKNGNSQVPSL-RQVYWKRLIIDEGHIVQSKTSNAAQ 620
Query: 343 MALRLYAKHRWCITGTP 359
+ L+++ RW ++GTP
Sbjct: 621 ICRLLFSERRWAVSGTP 637
Score = 43 (20.2 bits), Expect = 9.8e-09, Sum P(2) = 9.8e-09
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 972 TAQAQFLRAHDEIRMATTRLHLKEDDNDT-SVDALSPDE 1009
T + +L+ DE+++ + LK ND S DA ++
Sbjct: 1184 TVKTLYLKGVDELKILSRNEKLKNAKNDKESFDAKEKED 1222
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 139 (54.0 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 39/132 (29%), Positives = 68/132 (51%)
Query: 321 FWWR-ICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFLKSSP 378
F WR I +DEA ++ N + +R++ ++ R ITGTP+Q L +L+ LL FL
Sbjct: 396 FSWRYIIIDEAHRIK-NENSVLSKGVRMFNSQFRLLITGTPLQNNLHELWSLLNFLLPDV 454
Query: 379 FSISR---WWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSW 435
FS S W ++ + +V ++ HK + + R K V E LPP++E +
Sbjct: 455 FSSSDDFDKWFDLANNTENQQEV--IDKLHKVLRPFLLRRIKTEV--EKSLPPKKEIKLF 510
Query: 436 LTFSPIEEHFYQ 447
+ S +++ +Y+
Sbjct: 511 VGLSTMQKEWYK 522
Score = 66 (28.3 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ ++ +
Sbjct: 297 GILADEMGLGKTLQTISLL 315
Score = 61 (26.5 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 22/83 (26%), Positives = 39/83 (46%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALN 553
+LLN ++LR+AC HP + ++ P + E L+ GK + L KL+ L
Sbjct: 544 RLLNICMQLRKACNHPYLFDGA----EEEPYTTGEHLIDNSGKMAL-----LDKLLKKLK 594
Query: 554 GLAGIALIEKNLSQAVSLYKEAM 576
LI +S+ + + ++ M
Sbjct: 595 ERGSRVLIFSQMSRMLDILEDYM 617
Score = 50 (22.7 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+ P L+ W E TR P L+ + G++ D + D+ +T
Sbjct: 326 GPHLIIAPKSTLSGWAKEFTRWC-P-FLRVVRFHGSKEER-EDIKKNQLI-FKKFDVCIT 381
Query: 282 TYDV 285
TY+V
Sbjct: 382 TYEV 385
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 157 (60.3 bits), Expect = 1.6e-08, Sum P(5) = 1.6e-08
Identities = 41/135 (30%), Positives = 69/135 (51%)
Query: 315 TLLTRIFWWRICLDEAQMVESNAAAATEMALRLYA-KHRWCITGTPIQRKLDDLYGLLRF 373
T L R W I +DEA ++ N + +RL++ +R ITGTP+Q L +L+ LL F
Sbjct: 309 TTLRRFSWRYIIIDEAHRIK-NENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNF 367
Query: 374 LKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECV 433
L FS + + E + EN ++ HK + + R K V E LPP++E +
Sbjct: 368 LLPEVFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDV--EKGLPPKKETI 425
Query: 434 SWLTFSPIEEHFYQS 448
+ S +++ +Y++
Sbjct: 426 LKVGMSQMQKQYYKA 440
Score = 67 (28.6 bits), Expect = 1.6e-08, Sum P(5) = 1.6e-08
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 83 GILADEMGLGKTVELLACI-FAH 104
GILADEMGLGKT++ ++ + + H
Sbjct: 215 GILADEMGLGKTLQTISLLAYLH 237
Score = 50 (22.7 bits), Expect = 1.6e-08, Sum P(5) = 1.6e-08
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 491 EAAKLLNSLLKLRQACCHP 509
E +LLN ++LR+ C HP
Sbjct: 454 ERKRLLNIAMQLRKCCNHP 472
Score = 39 (18.8 bits), Expect = 1.6e-08, Sum P(5) = 1.6e-08
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 222 GATLIVCPAPILAQWDAEITR 242
G ++V P L W EI R
Sbjct: 244 GPHMVVAPKSTLGNWMNEIRR 264
Score = 39 (18.8 bits), Expect = 1.6e-08, Sum P(5) = 1.6e-08
Identities = 19/94 (20%), Positives = 37/94 (39%)
Query: 749 EGNKDFSAELIRKIEEAISGSLNK-SRALRTASRYRSISGLTYHIQSSLDQ-LEASRKTL 806
EG + E ++ + LN R ++ R + I ++ + L+ R
Sbjct: 878 EGKTEEEVERYAQVFQVRYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYRNPW 937
Query: 807 LDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDG 840
L+ ++ Q K E+ DR C + + +G G
Sbjct: 938 LELKIQYGQNKGKLYNEECDRFMICMV-HKLGYG 970
>TIGR_CMR|BA_5487 [details] [associations]
symbol:BA_5487 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000099451 InterPro:IPR022138 Pfam:PF12419
RefSeq:NP_847649.1 RefSeq:YP_022153.1 RefSeq:YP_031335.1
ProteinModelPortal:Q81K50 IntAct:Q81K50 DNASU:1085116
EnsemblBacteria:EBBACT00000010571 EnsemblBacteria:EBBACT00000018432
EnsemblBacteria:EBBACT00000022093 GeneID:1085116 GeneID:2819120
GeneID:2852260 KEGG:ban:BA_5487 KEGG:bar:GBAA_5487 KEGG:bat:BAS5096
OMA:ASTIYEF ProtClustDB:CLSK888016
BioCyc:BANT260799:GJAJ-5171-MONOMER
BioCyc:BANT261594:GJ7F-5349-MONOMER Uniprot:Q81K50
Length = 918
Score = 121 (47.7 bits), Expect = 1.9e-08, Sum P(4) = 1.9e-08
Identities = 28/132 (21%), Positives = 64/132 (48%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L+ + W + LDEAQ +++ ++ L A H+ +TGTP++ +L +L+ + F+
Sbjct: 566 LSTLCWDAVILDEAQNIKNPHTKQSKAVRNLQANHKIALTGTPMENRLAELWSIFDFINH 625
Query: 377 SPF-SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSW 435
S+ ++ + ++ D G ++ +F + R +K + L LP ++E ++
Sbjct: 626 GYLGSLGQFQRRFVSPIEKDRDEGKIQQVQRFISPFLLRRTKKDQTVALNLPDKQEQKAY 685
Query: 436 LTFSPIEEHFYQ 447
+ + Y+
Sbjct: 686 CPLTGEQASLYE 697
Score = 82 (33.9 bits), Expect = 1.9e-08, Sum P(4) = 1.9e-08
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 211 LIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDI 270
L+ ++ + TG LIV P +L W E R P +L+ ++ G+ + S D
Sbjct: 490 LLYIKENNLQTGPALIVAPTSVLGNWQKEFERFA-P-NLRVQLHYGSNRAK--GESFKDF 545
Query: 271 SELVGADIVLTTYDVLKED 289
L AD+VLT+Y + + D
Sbjct: 546 --LQSADVVLTSYALAQLD 562
Score = 64 (27.6 bits), Expect = 1.9e-08, Sum P(4) = 1.9e-08
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 75 YTSSYVFGGILADEMGLGKTVELL 98
Y FG +LAD+MGLGK+++ +
Sbjct: 464 YLRKLGFGALLADDMGLGKSIQTI 487
Score = 43 (20.2 bits), Expect = 1.9e-08, Sum P(4) = 1.9e-08
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 495 LLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMD-EILMVLIGKTKIEGEEAL 545
+L L KL+Q C HP + SM LM LI K + E L
Sbjct: 719 ILLMLNKLKQICNHPALYLKETEPKDIIERSMKTSTLMELIENIKDQNESCL 770
Score = 38 (18.4 bits), Expect = 6.4e-06, Sum P(4) = 6.4e-06
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 14 RPYQRRAAYWMVQREK 29
RPYQ+ W++ K
Sbjct: 452 RPYQQHGIEWLLYLRK 467
>RGD|1311935 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1311935 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 OrthoDB:EOG4SXNBV GeneTree:ENSGT00670000098110
IPI:IPI00560655 Ensembl:ENSRNOT00000043937 UCSC:RGD:1311935
ArrayExpress:D4ACG6 Uniprot:D4ACG6
Length = 903
Score = 113 (44.8 bits), Expect = 3.6e-08, Sum P(5) = 3.6e-08
Identities = 37/159 (23%), Positives = 72/159 (45%)
Query: 315 TLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 374
+ L W + +DEA +++ ++ R +TGTPIQ L +LY LL +
Sbjct: 155 SFLKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSVVFRLLLTGTPIQNSLQELYSLLSVV 214
Query: 375 KSSPFSISRW--WIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEEC 432
+ F + +++ +D E A E H+ + + R K V+ EL P + E
Sbjct: 215 EPDLFCREQVEDFVQCYQD-IEKESKSASEL-HRLLRPFLLRRVKAQVATEL--PKKTEV 270
Query: 433 VSWLTFSPIEEHFYQS-QHETCVGYAREVIQRLK-DNIL 469
V + S +++ +Y++ + + E +++K N+L
Sbjct: 271 VIYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQNVL 309
Score = 87 (35.7 bits), Expect = 3.6e-08, Sum P(5) = 3.6e-08
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+CP +L+ W E+ R PG L Y G + D+ + G ++LT
Sbjct: 90 GPFLILCPLSVLSNWKEEMERFA-PG-LSCVTYTGDKEERARRQQ--DLRQESGFHVLLT 145
Query: 282 TYDVLKEDLS 291
TY++ +D S
Sbjct: 146 TYEICLKDAS 155
Score = 61 (26.5 bits), Expect = 3.6e-08, Sum P(5) = 3.6e-08
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 82 GGILADEMGLGKTVELLACIFAHRKPASDDSIFI 115
G IL DEMGLGKT + +A + +D+ F+
Sbjct: 60 GCILGDEMGLGKTCQTIALLIYLVGRLNDEGPFL 93
Score = 45 (20.9 bits), Expect = 3.6e-08, Sum P(5) = 3.6e-08
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 490 AEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGK 536
A+ KL N L +LR+ HP + ++ P + E L+ GK
Sbjct: 300 AKKVKLQNVLTQLRKCVDHPYL----FDGVEPEPFEVGEHLIEASGK 342
Score = 41 (19.5 bits), Expect = 3.6e-08, Sum P(5) = 3.6e-08
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 855 YEARLFRLKKSQGDIASAEEAVDLQK 880
+E R + + S+ D S E+ V+LQK
Sbjct: 578 FEGRDYSKEPSKEDRKSFEQLVNLQK 603
Score = 40 (19.1 bits), Expect = 4.5e-08, Sum P(5) = 4.5e-08
Identities = 33/127 (25%), Positives = 54/127 (42%)
Query: 912 RDVRETVVVSKSPSELEVILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYANARSLA 971
RD E +V K+ S+L++ VI+ T LG + +A + L + E ++ L
Sbjct: 466 RDTVEEIVYRKAASKLQLTNMVIEGGHFT-LGAQKPAAEA-DLQLSEILK---FGLDKLL 520
Query: 972 TAQAQFLRAHDEIRMATTRLHLKEDDNDTSVDALSPDELASASVTNSSEKFISMTLLSQV 1031
+++ + DEI LK +T +PD L +A+ S E+ L S
Sbjct: 521 SSEGSSM---DEI-------DLKSILGETKDGQWTPDALPAAAEGESREQEEGSELNSYG 570
Query: 1032 KGKLRYL 1038
K YL
Sbjct: 571 KENHMYL 577
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 124 (48.7 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 36/131 (27%), Positives = 58/131 (44%)
Query: 320 IFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
I W+ + +DEA +++ + + L +++R ITGTP+ L +L+ LL FL F
Sbjct: 441 IDWFFLVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNNLKELWSLLNFLMPKIF 500
Query: 380 SISRWWIEVIR-DPYENGDVGAMEFT---HKFFKEIMCRSSKVHVSDELQLPPQEECVSW 435
S + + D E H K M R KV V E LPP+ E +
Sbjct: 501 DNSEEFDNLFNISKISTNDNKQSEIITQLHTILKPFMLRRLKVEV--EQSLPPKREIYIF 558
Query: 436 LTFSPIEEHFY 446
+ S +++ Y
Sbjct: 559 VGMSKLQKKLY 569
Score = 73 (30.8 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 79 YVFGGILADEMGLGKTVELLA--CIFAHRKPASDDSIFI 115
+ GILADEMGLGKT++ ++ C K SI I
Sbjct: 339 FKINGILADEMGLGKTLQTISLLCYLRFNKNIKKKSIII 377
Score = 69 (29.3 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 224 TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTY 283
++I+CP L W EI + P +K Y G ++ + S+ D++LTTY
Sbjct: 374 SIIICPRSTLDNWYEEIKKWCTP--MKAFKYYGNKDQRKELNRNLLHSDF---DVLLTTY 428
Query: 284 DVLKEDLS--HDSD 295
+++ +D S +D D
Sbjct: 429 EIVIKDKSALYDID 442
Score = 49 (22.3 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 494 KLLNSLLKLRQACCHP 509
++LN L++LR+ C HP
Sbjct: 589 QMLNILMQLRKCCNHP 604
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 124 (48.7 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 36/131 (27%), Positives = 58/131 (44%)
Query: 320 IFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
I W+ + +DEA +++ + + L +++R ITGTP+ L +L+ LL FL F
Sbjct: 441 IDWFFLVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNNLKELWSLLNFLMPKIF 500
Query: 380 SISRWWIEVIR-DPYENGDVGAMEFT---HKFFKEIMCRSSKVHVSDELQLPPQEECVSW 435
S + + D E H K M R KV V E LPP+ E +
Sbjct: 501 DNSEEFDNLFNISKISTNDNKQSEIITQLHTILKPFMLRRLKVEV--EQSLPPKREIYIF 558
Query: 436 LTFSPIEEHFY 446
+ S +++ Y
Sbjct: 559 VGMSKLQKKLY 569
Score = 73 (30.8 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 79 YVFGGILADEMGLGKTVELLA--CIFAHRKPASDDSIFI 115
+ GILADEMGLGKT++ ++ C K SI I
Sbjct: 339 FKINGILADEMGLGKTLQTISLLCYLRFNKNIKKKSIII 377
Score = 69 (29.3 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 224 TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTY 283
++I+CP L W EI + P +K Y G ++ + S+ D++LTTY
Sbjct: 374 SIIICPRSTLDNWYEEIKKWCTP--MKAFKYYGNKDQRKELNRNLLHSDF---DVLLTTY 428
Query: 284 DVLKEDLS--HDSD 295
+++ +D S +D D
Sbjct: 429 EIVIKDKSALYDID 442
Score = 49 (22.3 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 494 KLLNSLLKLRQACCHP 509
++LN L++LR+ C HP
Sbjct: 589 QMLNILMQLRKCCNHP 604
>WB|WBGene00004204 [details] [associations]
symbol:swsn-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006355
GO:GO:0003677 GO:GO:0040035 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 OMA:QKKYTIS InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:Z68751 EMBL:Z68341 EMBL:AF230280 PIR:T20488
RefSeq:NP_502082.1 UniGene:Cel.23435 ProteinModelPortal:G5EF53
SMR:G5EF53 EnsemblMetazoa:F01G4.1 GeneID:178015
KEGG:cel:CELE_F01G4.1 CTD:178015 WormBase:F01G4.1 NextBio:899366
Uniprot:G5EF53
Length = 1474
Score = 122 (48.0 bits), Expect = 5.1e-08, Sum P(7) = 5.1e-08
Identities = 42/143 (29%), Positives = 66/143 (46%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFL 374
LL +I W + +DE ++++ T M + A+HR +TGTP+Q KL +L+ LL FL
Sbjct: 648 LLGKIRWKYMIIDEGHRLKNHNCKLTLMLNGFFHAQHRLLLTGTPLQNKLPELWALLNFL 707
Query: 375 KSSPFS----ISRWWIEVIRDPYENGDVGAMEFT------HKFFKEIMCRSSKVHVSDEL 424
S FS +W+ E ++ E HK + + R K V E
Sbjct: 708 LPSIFSSCGTFEQWFNAPFATTGEKVELNQEETMLIIRRLHKVLRPFLLRRLKKEV--ES 765
Query: 425 QLPPQEECVSWLTFSPIEEHFYQ 447
QLP + E V S +++ Y+
Sbjct: 766 QLPDKTEYVIKCDQSALQKVIYR 788
Score = 69 (29.3 bits), Expect = 5.1e-08, Sum P(7) = 5.1e-08
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ ++ +
Sbjct: 554 GILADEMGLGKTIQTISLV 572
Score = 62 (26.9 bits), Expect = 5.1e-08, Sum P(7) = 5.1e-08
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGA-DIVL 280
G L++ P L+ W E + P S+ T IY+G +++ I + GA ++++
Sbjct: 583 GPYLVIVPLSTLSNWQNEFAKWA-P-SVTTIIYKGTKDARRRVEG--QIRK--GAFNVLM 636
Query: 281 TTYD-VLKE 288
TTY+ V+KE
Sbjct: 637 TTYEYVIKE 645
Score = 50 (22.7 bits), Expect = 5.1e-08, Sum P(7) = 5.1e-08
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 897 KNSTSSSVGNEEIKRRDVRETVVVSKSP 924
K TSSSV EE K+ D T S P
Sbjct: 1394 KKETSSSVKTEEAKKDDEPSTSSASAPP 1421
Score = 50 (22.7 bits), Expect = 5.1e-08, Sum P(7) = 5.1e-08
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 459 EVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 509
E + + + L++ + H L + ++ A L+N+++ LR+ C HP
Sbjct: 772 EYVIKCDQSALQKVIYRHMQKGLLLDAKMSSG-ARSLMNTVVHLRKLCNHP 821
Score = 45 (20.9 bits), Expect = 5.1e-08, Sum P(7) = 5.1e-08
Identities = 18/74 (24%), Positives = 38/74 (51%)
Query: 757 ELIRKIEEAISGSLNKSRALRTASRYRSISGLTYHIQSSLDQL---EASRKT---LLDRL 810
+ ++++EE + N++ A R R R ++GL + S+D + +KT L +++
Sbjct: 1129 QFMKQVEE-VEDENNQAVAERKKQRKRKMAGLDEN-DDSMDDVVLQHKKKKTDPELAEKI 1186
Query: 811 LEIDQTMEKPKEED 824
E+ + + K ED
Sbjct: 1187 NEMLDVILEYKNED 1200
Score = 39 (18.8 bits), Expect = 2.3e-06, Sum P(6) = 2.3e-06
Identities = 18/77 (23%), Positives = 31/77 (40%)
Query: 947 ISASSKQLHILEAMRKEYANARSLATAQAQF-LRAHDEIRMATTRLHLKEDDNDTSVDAL 1005
I+A+S + IL A R + N +F R+ R ++ D + + +
Sbjct: 975 ITANSVEEKILAAARYKL-NVDEKVIQAGKFDQRSTGAERKQMLEQIIQADGEEEEEEEV 1033
Query: 1006 SPDELASASVTNSSEKF 1022
DE + V S E+F
Sbjct: 1034 PDDETVNQMVARSEEEF 1050
Score = 37 (18.1 bits), Expect = 5.1e-08, Sum P(7) = 5.1e-08
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 14 RPYQRRAAYWMV 25
+PYQ + WMV
Sbjct: 534 KPYQIKGLEWMV 545
>ASPGD|ASPL0000061821 [details] [associations]
symbol:AN10043 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001308 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EnsemblFungi:CADANIAT00002546 HOGENOM:HOG000175622 OMA:MEIEESV
Uniprot:C8VUX5
Length = 648
Score = 132 (51.5 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 33/134 (24%), Positives = 70/134 (52%)
Query: 319 RIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 378
+ W + LDE ++++ + T+ RL +++R +TGTPIQ L +L+ +L +L
Sbjct: 111 KTLWAHVVLDEGHRIKNSRSKRTQGVYRLRSENRIVLTGTPIQNDLTELWSILHWLYPDV 170
Query: 379 FSISRWWIEVIRDPYE--NGDVGAMEFTH--KFFKEIMCRSSKVHVSDELQLPPQEECVS 434
F + ++ + + +G ++ +H +F K +M R +K L LPP++E V
Sbjct: 171 FVPAT--AKLFENAFSLTDGKFDSIFLSHITRFLKVVMLRRTKCDSQIGLDLPPKKETVF 228
Query: 435 WLTFSPIEEHFYQS 448
+ + ++ +Y++
Sbjct: 229 SVPLTELQLGWYRT 242
Score = 80 (33.2 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 216 DSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVG 275
D+ A L+VCP +L W +EI+R T L+ Y G S ++ G
Sbjct: 34 DNERADSKFLVVCPLSVLNTWMSEISRWTT--GLRPMAYHGG---SEERENLRTCFRQQG 88
Query: 276 AD---IVLTTYDVLKEDL 290
A+ IV+TTY+ L DL
Sbjct: 89 AEPWNIVVTTYETLCSDL 106
Score = 73 (30.8 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 82 GGILADEMGLGKTVELLACIFAHRKPASD-DSIFI 115
GGILAD+MGLGKT++ L+ +F + K DS F+
Sbjct: 10 GGILADDMGLGKTLQALS-LFQYVKDNERADSKFL 43
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 135 (52.6 bits), Expect = 6.1e-08, Sum P(3) = 6.1e-08
Identities = 36/127 (28%), Positives = 61/127 (48%)
Query: 321 FWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
F WR + +DEA +++ + +E+ + +R +TGTP+Q L +L+ LL FL F
Sbjct: 306 FHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVF 365
Query: 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ + + GD +E H K + R K V E LPP++E +L S
Sbjct: 366 NSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDV--EKSLPPKKEIKIYLGLS 423
Query: 440 PIEEHFY 446
++ +Y
Sbjct: 424 KMQREWY 430
Score = 69 (29.3 bits), Expect = 6.1e-08, Sum P(3) = 6.1e-08
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A +
Sbjct: 207 GILADEMGLGKTLQTIALL 225
Score = 55 (24.4 bits), Expect = 6.1e-08, Sum P(3) = 6.1e-08
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALN 553
+LLN L++LR+ C HP + G P + DE ++ GK + L KL+ L
Sbjct: 451 RLLNILMQLRKCCNHPYL-FDGAEP--GPPYTTDEHIVSNSGKMVV-----LDKLLAKLK 502
Query: 554 GLAGIALIEKNLSQAVSLYKE 574
LI +++ + + ++
Sbjct: 503 EQGSRVLIFSQMTRLLDILED 523
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 140 (54.3 bits), Expect = 7.4e-08, Sum P(3) = 7.4e-08
Identities = 36/134 (26%), Positives = 67/134 (50%)
Query: 313 IPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLR 372
+ T L ++ W I +DEA +++ + +E L +++R ITGTP+Q L +L+ LL
Sbjct: 245 VKTQLKKLNWRYIIIDEAHRIKNEKSKLSETVRELNSENRLLITGTPLQNNLHELWALLN 304
Query: 373 FLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEEC 432
FL F+ S + + +G+ ++ HK + + R K V E L P++E
Sbjct: 305 FLLPDIFTSSDDFDSWFSNDAMSGNTDLVQRLHKVLQPFLLRRIKSDV--EKSLLPKKEV 362
Query: 433 VSWLTFSPIEEHFY 446
++ S ++ +Y
Sbjct: 363 KVYVGLSKMQREWY 376
Score = 68 (29.0 bits), Expect = 7.4e-08, Sum P(3) = 7.4e-08
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ ++ I
Sbjct: 153 GILADEMGLGKTLQTISMI 171
Score = 54 (24.1 bits), Expect = 7.4e-08, Sum P(3) = 7.4e-08
Identities = 28/99 (28%), Positives = 42/99 (42%)
Query: 491 EAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVM 550
E A+L+N L+ LR+ HP + G P + D+ L+ GK + L KL+M
Sbjct: 394 EKARLMNILMHLRKCVNHPYL-FDGAEP--GPPFTTDQHLVDNSGKMVV-----LDKLLM 445
Query: 551 ALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLD 589
LI S+ + L ++ H E RLD
Sbjct: 446 KFKEQGSRVLIFSQFSRMLDLLEDFCWW--RHYEYCRLD 482
>UNIPROTKB|O53499 [details] [associations]
symbol:helZ "PROBABLE HELICASE HELZ" species:83332
"Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
GO:GO:0005618 GenomeReviews:AL123456_GR GO:GO:0003677 EMBL:BX842578
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
PIR:B70841 RefSeq:NP_216617.1 ProteinModelPortal:O53499 SMR:O53499
EnsemblBacteria:EBMYCT00000002428 GeneID:888635 KEGG:mtu:Rv2101
PATRIC:18153236 TubercuList:Rv2101 HOGENOM:HOG000099451 OMA:PYQERGL
ProtClustDB:CLSK872005 InterPro:IPR022138 Pfam:PF12419
Uniprot:O53499
Length = 1013
Score = 117 (46.2 bits), Expect = 7.9e-08, Sum P(5) = 7.9e-08
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 374
W R+ LDEAQ V+++ + A + RL A HR +TGTP++ +L +L+ ++ FL
Sbjct: 656 WNRVVLDEAQAVKNSLSRAAKAVRRLRAAHRVALTGTPMENRLAELWSIMDFL 708
Score = 76 (31.8 bits), Expect = 7.9e-08, Sum P(5) = 7.9e-08
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 75 YTSSYVFGGILADEMGLGKTVELLA 99
+ SS G LAD+MGLGKTV+LLA
Sbjct: 546 FLSSLGLGSCLADDMGLGKTVQLLA 570
Score = 71 (30.1 bits), Expect = 7.9e-08, Sum P(5) = 7.9e-08
Identities = 21/80 (26%), Positives = 39/80 (48%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G TL++CP ++ W E R P +L+ + G + L ++ D L D+V++
Sbjct: 586 GPTLLLCPMSLVGNWPQEAARFA-P-NLRVYAHHGG--ARLHGEALRD--HLERTDLVVS 639
Query: 282 TYDVLKEDLSHDSDRHEGDR 301
TY D+ ++ +E +R
Sbjct: 640 TYTTATRDIDELAE-YEWNR 658
Score = 42 (19.8 bits), Expect = 7.9e-08, Sum P(5) = 7.9e-08
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 495 LLNSLLKLRQACCHP 509
+L ++ KL+Q C HP
Sbjct: 804 VLAAMAKLKQVCNHP 818
Score = 41 (19.5 bits), Expect = 9.9e-08, Sum P(5) = 9.9e-08
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 756 AELIRKIEEAISGSLNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQ 815
AEL ++ G L S RT RY H + + ++L AS + + R L+ D
Sbjct: 699 AELWSIMDFLNPGLLGSSERFRT--RYAIPIERHGHTEPA-ERLRASTRPYILRRLKTDP 755
Query: 816 TMEKPKEEDMDRMRHCRI 833
+ E ++ ++C++
Sbjct: 756 AIIDDLPEKIEIKQYCQL 773
Score = 40 (19.1 bits), Expect = 7.9e-08, Sum P(5) = 7.9e-08
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 14 RPYQRRAAYWM 24
RPYQ+R W+
Sbjct: 534 RPYQQRGLAWL 544
Score = 37 (18.1 bits), Expect = 0.00044, Sum P(4) = 0.00044
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 132 LKRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKK 177
L E + + S + +G WV D + + + P G+K
Sbjct: 432 LSEEEIAALTETKSPLIRLRGQWVALDTEQMRRGLEFLERKPTGRK 477
>TAIR|locus:2040184 [details] [associations]
symbol:PKL "PICKLE" species:3702 "Arabidopsis thaliana"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0016568
"chromatin modification" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=IMP] [GO:0009733 "response to
auxin stimulus" evidence=IMP] [GO:2000023 "regulation of lateral
root development" evidence=IMP] [GO:0009788 "negative regulation of
abscisic acid mediated signaling pathway" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0009739 "response to gibberellin
stimulus" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0008270
GO:GO:0016568 GO:GO:0048364 GO:GO:0009739 GO:GO:0009788
GO:GO:0009736 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOGENOM:HOG000231124 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF185578 EMBL:AF185577 EMBL:AK229409 IPI:IPI00521160
PIR:T52301 RefSeq:NP_565587.1 UniGene:At.11745
ProteinModelPortal:Q9S775 SMR:Q9S775 STRING:Q9S775 PaxDb:Q9S775
PRIDE:Q9S775 EnsemblPlants:AT2G25170.1 GeneID:817055
KEGG:ath:AT2G25170 TAIR:At2g25170 InParanoid:Q9S775 OMA:NVVMYFG
PhylomeDB:Q9S775 ProtClustDB:CLSN2688404 Genevestigator:Q9S775
GermOnline:AT2G25170 GO:GO:2000023 Uniprot:Q9S775
Length = 1384
Score = 125 (49.1 bits), Expect = 9.8e-08, Sum P(5) = 9.8e-08
Identities = 31/133 (23%), Positives = 64/133 (48%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLK 375
+L I W + +DE +++ + + + HR +TGTP+Q LD+L+ L+ FL
Sbjct: 410 VLKPIKWECMIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELFMLMHFLD 469
Query: 376 SSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSW 435
+ F + E +D + + + HK + R K V ++ PP++E +
Sbjct: 470 AGKFGSLEEFQEEFKDINQEEQISRL---HKMLAPHLLRRVKKDVMKDM--PPKKELILR 524
Query: 436 LTFSPIEEHFYQS 448
+ S +++ +Y++
Sbjct: 525 VDLSSLQKEYYKA 537
Score = 65 (27.9 bits), Expect = 9.8e-08, Sum P(5) = 9.8e-08
Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 84 ILADEMGLGKTVE---LLACIF 102
ILADEMGLGKT++ LLA +F
Sbjct: 295 ILADEMGLGKTIQSIALLASLF 316
Score = 62 (26.9 bits), Expect = 9.8e-08, Sum P(5) = 9.8e-08
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 611 ATELSQNEQHFPGCSEKAFKIHSIETCDEN---ARKCQRVSREENSDFTDAEDPSGHLSD 667
A E+S +++ G KAFK+ + E DEN A + QRV+ E S ++ D + + +
Sbjct: 800 AEEVSVDDEEENGFL-KAFKVANFEYIDENEAAALEAQRVAAESKSSAGNS-DRASYWEE 857
Query: 668 LSENGF 673
L ++ F
Sbjct: 858 LLKDKF 863
Score = 54 (24.1 bits), Expect = 9.8e-08, Sum P(5) = 9.8e-08
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 486 IITHAEAAKL-LNSLL-KLRQACCHP 509
++T A++ LN+++ +LR+ CCHP
Sbjct: 545 VLTKKGGAQISLNNIMMELRKVCCHP 570
Score = 46 (21.3 bits), Expect = 9.8e-08, Sum P(5) = 9.8e-08
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 705 LSGFSVKLSVAQQEFRKSYMQVCNALDDREKQ 736
+ G +V + A+ E + Y Q+C LD+ ++
Sbjct: 1245 IMGAAVDNNQARVEIAQHYNQMCKLLDENARE 1276
Score = 46 (21.3 bits), Expect = 6.2e-06, Sum P(5) = 6.2e-06
Identities = 23/84 (27%), Positives = 33/84 (39%)
Query: 91 LGKTVELLACIFAHRKPA-----SDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVS 145
+ VE L I + RKP SDD F+ + + + +R +E C A
Sbjct: 1 MSSLVERLR-IRSDRKPVYNLDDSDDDDFVPKKDRTFEQVEAIVRTDAKENA---CQACG 56
Query: 146 ESRKYKGLWVQCDICDAWQHADCV 169
ES V C+ C HA C+
Sbjct: 57 ESTNL----VSCNTCTYAFHAKCL 76
Score = 40 (19.1 bits), Expect = 2.3e-05, Sum P(5) = 2.3e-05
Identities = 16/56 (28%), Positives = 19/56 (33%)
Query: 186 KHTRKKDMTNIVVR-DG-EHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAE 239
K R + +VR D E+ CQ C E T A C P L E
Sbjct: 31 KKDRTFEQVEAIVRTDAKENACQACGESTNLVSCNTCTYAFHAKCLVPPLKDASVE 86
>UNIPROTKB|F1P0A4 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR020838 Pfam:PF00176 Pfam:PF13892 GO:GO:0005524
GO:GO:0003677 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016817 GeneTree:ENSGT00680000100002 EMBL:AADN02016239
EMBL:AADN02016240 IPI:IPI00819661 Ensembl:ENSGALT00000038610
ArrayExpress:F1P0A4 Uniprot:F1P0A4
Length = 469
Score = 130 (50.8 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 35/127 (27%), Positives = 60/127 (47%)
Query: 321 FWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
F WR + +DEA +++ + +E+ +R +TGTP+Q L +L+ LL FL F
Sbjct: 285 FNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVF 344
Query: 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ S + GD +E H + + R K V E LPP++E ++ S
Sbjct: 345 NSSEDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADV--EKSLPPKKEVKIYVGLS 402
Query: 440 PIEEHFY 446
++ +Y
Sbjct: 403 KMQREWY 409
Score = 66 (28.3 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ ++ +
Sbjct: 186 GILADEMGLGKTLQTISLL 204
Score = 52 (23.4 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 494 KLLNSLLKLRQACCHP 509
+LLN L++LR+ C HP
Sbjct: 430 RLLNILMQLRKCCNHP 445
>UNIPROTKB|H0YMN5 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR020838 Pfam:PF00176 Pfam:PF13892 PROSITE:PS51413
GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AC020661 GO:GO:0016817 ChiTaRS:INO80
HGNC:HGNC:26956 EMBL:AC021753 ProteinModelPortal:H0YMN5 SMR:H0YMN5
Ensembl:ENST00000558357 Bgee:H0YMN5 Uniprot:H0YMN5
Length = 1104
Score = 134 (52.2 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 34/113 (30%), Positives = 57/113 (50%)
Query: 319 RIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 378
R+ W + LDEAQ ++S+++ ++ L+ ++R +TGTPIQ + +L+ LL F+ +
Sbjct: 643 RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 702
Query: 379 FS----ISRWWIEVIRDPYENG---DVGAMEFTHKFFKEIMCRSSKVHVSDEL 424
F + W+ + I EN D + H K M R K V +EL
Sbjct: 703 FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENEL 755
Score = 75 (31.5 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 83 GILADEMGLGKTVELLACIFAH 104
GILADEMGLGKTV+ +A + AH
Sbjct: 539 GILADEMGLGKTVQSIA-LLAH 559
Score = 53 (23.7 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 20/75 (26%), Positives = 30/75 (40%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGAD---- 277
G LI+ PA L W E TR P K Y G + L D
Sbjct: 568 GPFLIISPASTLNNWHQEFTRFV-P-KFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFH 625
Query: 278 IVLTTYDVLKEDLSH 292
+V+T+Y ++ +D+ +
Sbjct: 626 VVITSYQLVVQDVKY 640
Score = 38 (18.4 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 109 SDDSIFIDTAVQVTDDQKVNLRR 131
SD+S D+ + D++++NL R
Sbjct: 132 SDESSEADSQSEDDDEEELNLSR 154
>MGI|MGI:1915308 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein
1-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915308 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV OMA:TCQTIAL ChiTaRS:CHD1L
EMBL:AK014473 EMBL:AK165656 EMBL:BC052385 EMBL:BC057567
EMBL:BC062966 IPI:IPI00466859 IPI:IPI00890897 RefSeq:NP_080815.1
UniGene:Mm.41447 ProteinModelPortal:Q9CXF7 SMR:Q9CXF7
DIP:DIP-58953N STRING:Q9CXF7 PhosphoSite:Q9CXF7 PaxDb:Q9CXF7
PRIDE:Q9CXF7 Ensembl:ENSMUST00000029730 GeneID:68058 KEGG:mmu:68058
UCSC:uc008qow.1 UCSC:uc008qox.1 GeneTree:ENSGT00670000098110
InParanoid:Q9CXF7 NextBio:326336 Bgee:Q9CXF7 Genevestigator:Q9CXF7
Uniprot:Q9CXF7
Length = 900
Score = 111 (44.1 bits), Expect = 1.1e-07, Sum P(5) = 1.1e-07
Identities = 39/159 (24%), Positives = 73/159 (45%)
Query: 315 TLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 374
+ L W + +DEA +++ ++ A R +TGTPIQ L +LY LL +
Sbjct: 155 SFLKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSAVFRLLLTGTPIQNSLRELYSLLCVV 214
Query: 375 KSSPFSISRW--WIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEEC 432
+ F + +++ +D E A E H+ + + R K V+ EL P + E
Sbjct: 215 EPDLFCREQVEDFVQRYQD-IEKESKSASEL-HRLLQPFLLRRVKAQVATEL--PKKTEV 270
Query: 433 VSWLTFSPIEEHFYQS-QHETCVGYAREVIQRLK-DNIL 469
V + S +++ +Y++ + + E +++K NIL
Sbjct: 271 VVYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQNIL 309
Score = 84 (34.6 bits), Expect = 1.1e-07, Sum P(5) = 1.1e-07
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G L++CP +L+ W E+ R PG L Y G + D+ + G ++LT
Sbjct: 90 GPFLVLCPLSVLSNWKEEMERFA-PG-LSCVTYTGDKEERARLQQ--DLRQESGFHVLLT 145
Query: 282 TYDVLKEDLS 291
TY++ +D S
Sbjct: 146 TYEICLKDAS 155
Score = 61 (26.5 bits), Expect = 1.1e-07, Sum P(5) = 1.1e-07
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 82 GGILADEMGLGKTVELLACIFAHRKPASDDSIFI 115
G IL DEMGLGKT + +A + +D+ F+
Sbjct: 60 GCILGDEMGLGKTCQTIALLIYLVGRLNDEGPFL 93
Score = 45 (20.9 bits), Expect = 1.1e-07, Sum P(5) = 1.1e-07
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 490 AEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGK 536
A+ KL N L +LR+ HP + ++ P + E L+ GK
Sbjct: 300 AKKVKLQNILTQLRKCVDHPYL----FDGVEPEPFEVGEHLIEASGK 342
Score = 41 (19.5 bits), Expect = 1.1e-07, Sum P(5) = 1.1e-07
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 855 YEARLFRLKKSQGDIASAEEAVDLQK 880
+E R + + S+ D S E+ V+LQK
Sbjct: 580 FEGRDYSKEPSKEDRKSFEQLVNLQK 605
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 121 (47.7 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 36/142 (25%), Positives = 62/142 (43%)
Query: 315 TLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 374
T L +W + +DE +++ R A ++ +TGTP+Q L +L+ LL FL
Sbjct: 319 TTLQNCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFL 378
Query: 375 KSSPF----SISRWW-IEVIRDPYEN-----GDVGAMEFTHKFFKEIMCRSSKVHVSDEL 424
F S W+ I + + E+ + + H+ + R K V+ L
Sbjct: 379 LPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVA--L 436
Query: 425 QLPPQEECVSWLTFSPIEEHFY 446
++PP+ E V + S +E FY
Sbjct: 437 EVPPKREVVVYAPLSKKQEIFY 458
Score = 74 (31.1 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKTV+ +A I
Sbjct: 222 GILADEMGLGKTVQCIATI 240
Score = 53 (23.7 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 226 IVC-PAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGA----DIVL 280
+VC P L W AE R T P + T +Y G + + I E G +V+
Sbjct: 253 LVCGPLSTLPNWMAEFKRFT-P-EIPTMLYHGTQQERR--ILVKHIHERKGTLQIHPVVI 308
Query: 281 TTYDVLKED 289
T++++ D
Sbjct: 309 TSFEIAMRD 317
Score = 51 (23.0 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGK 536
KL N ++ LR+ C HP + + + Q +DE L+ GK
Sbjct: 537 KLQNIMMLLRKCCNHPYLIEYPIDPVTQE-FKVDEELVTNSGK 578
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 112 (44.5 bits), Expect = 1.4e-07, Sum P(4) = 1.4e-07
Identities = 38/147 (25%), Positives = 67/147 (45%)
Query: 315 TLLTRIFWWRICLDEAQMVESNAAAATEMALRLY--AKHRWCITGTPIQRKLDDLYGLLR 372
+LL++ W + +DE ++ NA + + Y ++R +TGTP+Q L +L+ LL
Sbjct: 584 SLLSKHDWAHMIIDEGHRMK-NAQSKLSFTISHYYRTRNRLILTGTPLQNNLPELWALLN 642
Query: 373 FLKSSPFSISRWWIEVIRDPYEN-GDVGAMEFT-----------HKFFKEIMCRSSKVHV 420
F+ F+ ++ + + P+ N G +E T HK + + R K V
Sbjct: 643 FVLPKIFNSAKTFEDWFNTPFANTGTQEKLELTEEETLLIIRRLHKVLRPFLLRRLKKEV 702
Query: 421 SDELQLPPQEECVSWLTFSPIEEHFYQ 447
E LP + E V S +++ YQ
Sbjct: 703 --EKDLPDKVEKVIKCKLSGLQQQLYQ 727
Score = 74 (31.1 bits), Expect = 1.4e-07, Sum P(4) = 1.4e-07
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G L++ P + W E + P SL T IY+G N S + + D++LT
Sbjct: 520 GPFLVIVPLSTITNWTLEFEKWA-P-SLNTIIYKGTPNQRHSLQHQIRVGNF---DVLLT 574
Query: 282 TYDVLKEDLS 291
TY+ + +D S
Sbjct: 575 TYEYIIKDKS 584
Score = 69 (29.3 bits), Expect = 1.4e-07, Sum P(4) = 1.4e-07
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ ++ I
Sbjct: 491 GILADEMGLGKTIQSISLI 509
Score = 54 (24.1 bits), Expect = 1.4e-07, Sum P(4) = 1.4e-07
Identities = 43/219 (19%), Positives = 91/219 (41%)
Query: 630 KIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDRKXXXXXXXXXXX 689
K + IET EN + S EN+ FT A D + +D R+
Sbjct: 1101 KENEIETL-ENTPEASETSLIENNSFTAAVDEETN-ADKETTASRSKRRSSRKKRTIS-- 1156
Query: 690 XXXLITV--CENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHH 747
++T EN +++ S + V ++E + S +++ N + ++K+ L+
Sbjct: 1157 ---IVTAEDKENTQEESTSQENGGAKV-EEEVKSSSVEIINGSESKKKKPKLTVKIKLNK 1212
Query: 748 A---EGNKDFSAELIRKIEEAISGSLNKSRALRTASR----YRSISGLTYHIQSSLDQLE 800
E N AE K E ++ +T S+ + ++ L ++ LD+++
Sbjct: 1213 TTVLENNDGKRAE--EKPESKSPAKKTAAKKTKTKSKSLGIFPTVEKLVEEMREQLDEVD 1270
Query: 801 ASRKT-LLDRLL------EIDQTMEKPKEEDMDRMRHCR 832
+ +T + ++L + + +EKP D+ +++C+
Sbjct: 1271 SHPRTSIFEKLPSKRDYPDYFKVIEKPMAIDII-LKNCK 1308
Score = 44 (20.5 bits), Expect = 2.8e-06, Sum P(5) = 2.8e-06
Identities = 13/58 (22%), Positives = 29/58 (50%)
Query: 863 KKSQGDIASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDVRETVVV 920
KK I +AE+ + Q++++S + + K+S+ + E K++ + TV +
Sbjct: 1151 KKRTISIVTAEDKENTQEESTSQENGGAKVEEEVKSSSVEIINGSESKKKKPKLTVKI 1208
Score = 38 (18.4 bits), Expect = 2.8e-06, Sum P(5) = 2.8e-06
Identities = 15/76 (19%), Positives = 29/76 (38%)
Query: 757 ELIRKIEEAISGSLNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDR---LLEI 813
E + ++ ++ K R R R R I++ + EAS +L++ +
Sbjct: 1070 EAVEDDNMSLEDAIKKRREARERRRLRQNGTKENEIETLENTPEASETSLIENNSFTAAV 1129
Query: 814 DQTMEKPKEEDMDRMR 829
D+ KE R +
Sbjct: 1130 DEETNADKETTASRSK 1145
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 136 (52.9 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 38/127 (29%), Positives = 62/127 (48%)
Query: 321 FWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
F WR + +DEA +++ + +E+A +R +TGTP+Q L +L+ LL FL F
Sbjct: 263 FNWRYLVIDEAHRIKNEKSKLSEIAREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVF 322
Query: 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ S + D GD +E H + + R K V E LPP++E +L S
Sbjct: 323 N-SASDFDSWFDTNCLGDQKLVERLHAVLRPFLLRRIKAEV--EKSLPPKKEVKIYLGLS 379
Query: 440 PIEEHFY 446
++ +Y
Sbjct: 380 KMQREWY 386
Score = 69 (29.3 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A +
Sbjct: 164 GILADEMGLGKTLQTIALL 182
Score = 54 (24.1 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALN 553
+LLN L++LR+ C HP + G P + D L++ GK AL KL+ +
Sbjct: 407 RLLNILMQLRKCCNHPYL-FDGAEP--GPPYTTDTHLVINSGKMV-----ALDKLLPKVQ 458
Query: 554 GLAGIALIEKNLSQAVSLYKE 574
LI +++ + + ++
Sbjct: 459 EQGSRVLIFSQMTRVLDILED 479
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 135 (52.6 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 36/127 (28%), Positives = 61/127 (48%)
Query: 321 FWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
F WR + +DEA +++ + +E+ + +R +TGTP+Q L +L+ LL FL F
Sbjct: 306 FHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVF 365
Query: 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ + + GD +E H K + R K V E LPP++E +L S
Sbjct: 366 NSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDV--EKSLPPKKEIKIYLGLS 423
Query: 440 PIEEHFY 446
++ +Y
Sbjct: 424 KMQREWY 430
Score = 69 (29.3 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A +
Sbjct: 207 GILADEMGLGKTLQTIALL 225
Score = 55 (24.4 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALN 553
+LLN L++LR+ C HP + G P + DE ++ GK + L KL+ L
Sbjct: 451 RLLNILMQLRKCCNHPYL-FDGAEP--GPPYTTDEHIVSNSGKMVV-----LDKLLAKLK 502
Query: 554 GLAGIALIEKNLSQAVSLYKE 574
LI +++ + + ++
Sbjct: 503 EQGSRVLIFSQMTRLLDILED 523
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 135 (52.6 bits), Expect = 1.8e-07, Sum P(4) = 1.8e-07
Identities = 36/127 (28%), Positives = 61/127 (48%)
Query: 321 FWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
F WR + +DEA +++ + +E+ + +R +TGTP+Q L +L+ LL FL F
Sbjct: 282 FHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVF 341
Query: 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ + + GD +E H K + R K V E LPP++E +L S
Sbjct: 342 NSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDV--EKSLPPKKEIKIYLGLS 399
Query: 440 PIEEHFY 446
++ +Y
Sbjct: 400 KMQREWY 406
Score = 69 (29.3 bits), Expect = 1.8e-07, Sum P(4) = 1.8e-07
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A +
Sbjct: 183 GILADEMGLGKTLQTIALL 201
Score = 55 (24.4 bits), Expect = 1.8e-07, Sum P(4) = 1.8e-07
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALN 553
+LLN L++LR+ C HP + G P + DE ++ GK + L KL+ L
Sbjct: 427 RLLNILMQLRKCCNHPYL-FDGAEP--GPPYTTDEHIVSNSGKMVV-----LDKLLAKLK 478
Query: 554 GLAGIALIEKNLSQAVSLYKE 574
LI +++ + + ++
Sbjct: 479 EQGSRVLIFSQMTRLLDILED 499
Score = 42 (19.8 bits), Expect = 1.8e-07, Sum P(4) = 1.8e-07
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 979 RAHDEIRMATTRLHLKEDDNDTSVDALSPDELASASVTNSSEKFISM 1025
R ++ R+ H + +D V+ L E A +S KFI M
Sbjct: 504 RGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFM 550
>UNIPROTKB|F1Q2U2 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:AAEX03011032
Ensembl:ENSCAFT00000017488 Uniprot:F1Q2U2
Length = 898
Score = 119 (46.9 bits), Expect = 1.9e-07, Sum P(5) = 1.9e-07
Identities = 38/154 (24%), Positives = 74/154 (48%)
Query: 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
W + +DEA +++ + + L +TGTPIQ L +LY LL F++ F
Sbjct: 170 WSVLVVDEAHRLKNQNSLLHKTLLEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFPK 229
Query: 382 SRW--WIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ +++ +D + D A E HK + + R K V+ EL P + E V + S
Sbjct: 230 EQVGDFVQRYQDIEKESD-SASEL-HKLLQPFLLRRVKAEVATEL--PKKTEVVLYHGMS 285
Query: 440 PIEEHFYQS-QHETCVGYAREVIQRLK-DNILKR 471
+++ +Y++ + + E+ +++K N+L +
Sbjct: 286 ALQKKYYKAILMKDLDAFESEMAKKVKLQNVLSQ 319
Score = 79 (32.9 bits), Expect = 1.9e-07, Sum P(5) = 1.9e-07
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+CP +L+ W E+ R PG L +Y G + D+ + ++LT
Sbjct: 98 GPFLILCPLSVLSNWTEEMERFA-PG-LSCVMYAGDKEERARLQQ--DLKQESRFHVLLT 153
Query: 282 TYDVLKEDLS 291
TY++ +D S
Sbjct: 154 TYEICLKDSS 163
Score = 61 (26.5 bits), Expect = 1.9e-07, Sum P(5) = 1.9e-07
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 82 GGILADEMGLGKTVELLACIFAHRKPASDDSIFI 115
G IL DEMGLGKT + +A +D+ F+
Sbjct: 68 GCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFL 101
Score = 41 (19.5 bits), Expect = 1.9e-07, Sum P(5) = 1.9e-07
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 912 RDVRETVVVSKSPSELEVILGVIKNYCKTQLGREAISASSKQLHILEAMR 961
RD E +V K+ S+L++ +I+ T LG + +A + L + E ++
Sbjct: 473 RDTVEEIVYRKAASKLQLTNAIIEGGHFT-LGAQKPAADA-DLQLSEILK 520
Score = 39 (18.8 bits), Expect = 1.9e-07, Sum P(5) = 1.9e-07
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 490 AEAAKLLNSLLKLRQACCHP 509
A+ KL N L +LR+ HP
Sbjct: 308 AKKVKLQNVLSQLRKCVDHP 327
Score = 39 (18.8 bits), Expect = 2.9e-07, Sum P(5) = 2.9e-07
Identities = 19/74 (25%), Positives = 30/74 (40%)
Query: 855 YEARLFRLKKSQGDIASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDV 914
+E + + + S+ D S E+ V+LQK L + N + E KR+ +
Sbjct: 576 FEGKDYSKEPSKEDRESFEQLVNLQKTFLEKTTQEGRLLRNKGNVLLPGLSEESTKRKRI 635
Query: 915 RETVVVSKSPSELE 928
SP ELE
Sbjct: 636 L-------SPEELE 642
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 135 (52.6 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 36/127 (28%), Positives = 61/127 (48%)
Query: 321 FWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
F WR + +DEA +++ + +E+ + +R +TGTP+Q L +L+ LL FL F
Sbjct: 306 FHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVF 365
Query: 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ + + GD +E H K + R K V E LPP++E +L S
Sbjct: 366 NSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDV--EKSLPPKKEIKIYLGLS 423
Query: 440 PIEEHFY 446
++ +Y
Sbjct: 424 KMQREWY 430
Score = 69 (29.3 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A +
Sbjct: 207 GILADEMGLGKTLQTIALL 225
Score = 55 (24.4 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALN 553
+LLN L++LR+ C HP + G P + DE ++ GK + L KL+ L
Sbjct: 451 RLLNILMQLRKCCNHPYL-FDGAEP--GPPYTTDEHIVSNSGKMVV-----LDKLLAKLK 502
Query: 554 GLAGIALIEKNLSQAVSLYKE 574
LI +++ + + ++
Sbjct: 503 EQGSRVLIFSQMTRLLDILED 523
>UNIPROTKB|F1N166 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:DAAA02067438 EMBL:DAAA02067437 IPI:IPI01018574
Ensembl:ENSBTAT00000002973 Uniprot:F1N166
Length = 1078
Score = 135 (52.6 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 36/127 (28%), Positives = 61/127 (48%)
Query: 321 FWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
F WR + +DEA +++ + +E+ + +R +TGTP+Q L +L+ LL FL F
Sbjct: 306 FHWRYLVIDEAHRIKNEKSKLSEIVRDFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVF 365
Query: 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ + + GD +E H K + R K V E LPP++E +L S
Sbjct: 366 NSAEDFDSWFDTKNCLGDQKLVERLHTVLKPFLLRRIKTDV--EKSLPPKKEIKIYLGLS 423
Query: 440 PIEEHFY 446
++ +Y
Sbjct: 424 KMQREWY 430
Score = 69 (29.3 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A +
Sbjct: 207 GILADEMGLGKTLQTIALL 225
Score = 55 (24.4 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALN 553
+LLN L++LR+ C HP + G P + DE ++ GK + L KL+ L
Sbjct: 451 RLLNILMQLRKCCNHPYL-FDGAEP--GPPYTTDEHIVSNSGKMVV-----LDKLLAKLK 502
Query: 554 GLAGIALIEKNLSQAVSLYKE 574
LI +++ + + ++
Sbjct: 503 EQGSRVLIFSQMTRLLDILED 523
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 135 (52.6 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 36/127 (28%), Positives = 61/127 (48%)
Query: 321 FWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
F WR + +DEA +++ + +E+ + +R +TGTP+Q L +L+ LL FL F
Sbjct: 283 FHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVF 342
Query: 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ + + GD +E H K + R K V E LPP++E +L S
Sbjct: 343 NSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDV--EKSLPPKKEIKIYLGLS 400
Query: 440 PIEEHFY 446
++ +Y
Sbjct: 401 KMQREWY 407
Score = 69 (29.3 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A +
Sbjct: 184 GILADEMGLGKTLQTIALL 202
Score = 54 (24.1 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALN 553
+LLN L++LR+ C HP + G P + DE ++ GK AL KL+ +
Sbjct: 428 RLLNILMQLRKCCNHPYL-FDGAEP--GPPYTTDEHIVSNSGKMV-----ALDKLLARIK 479
Query: 554 GLAGIALIEKNLSQAVSLYKE 574
LI +++ + + ++
Sbjct: 480 EQGSRVLIFSQMTRLLDILED 500
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 135 (52.6 bits), Expect = 2.3e-07, Sum P(4) = 2.3e-07
Identities = 36/127 (28%), Positives = 61/127 (48%)
Query: 321 FWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
F WR + +DEA +++ + +E+ + +R +TGTP+Q L +L+ LL FL F
Sbjct: 303 FHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVF 362
Query: 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ + + GD +E H K + R K V E LPP++E +L S
Sbjct: 363 NSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDV--EKSLPPKKEIKIYLGLS 420
Query: 440 PIEEHFY 446
++ +Y
Sbjct: 421 KMQREWY 427
Score = 69 (29.3 bits), Expect = 2.3e-07, Sum P(4) = 2.3e-07
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A +
Sbjct: 204 GILADEMGLGKTLQTIALL 222
Score = 55 (24.4 bits), Expect = 2.3e-07, Sum P(4) = 2.3e-07
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALN 553
+LLN L++LR+ C HP + G P + DE ++ GK + L KL+ L
Sbjct: 448 RLLNILMQLRKCCNHPYL-FDGAEP--GPPYTTDEHIVSNSGKMVV-----LDKLLAKLK 499
Query: 554 GLAGIALIEKNLSQAVSLYKE 574
LI +++ + + ++
Sbjct: 500 EQGSRVLIFSQMTRLLDILED 520
Score = 42 (19.8 bits), Expect = 2.3e-07, Sum P(4) = 2.3e-07
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 979 RAHDEIRMATTRLHLKEDDNDTSVDALSPDELASASVTNSSEKFISM 1025
R ++ R+ H + +D V+ L E A +S KFI M
Sbjct: 525 RGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFM 571
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 135 (52.6 bits), Expect = 2.3e-07, Sum P(4) = 2.3e-07
Identities = 36/127 (28%), Positives = 61/127 (48%)
Query: 321 FWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
F WR + +DEA +++ + +E+ + +R +TGTP+Q L +L+ LL FL F
Sbjct: 306 FHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVF 365
Query: 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ + + GD +E H K + R K V E LPP++E +L S
Sbjct: 366 NSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDV--EKSLPPKKEIKIYLGLS 423
Query: 440 PIEEHFY 446
++ +Y
Sbjct: 424 KMQREWY 430
Score = 69 (29.3 bits), Expect = 2.3e-07, Sum P(4) = 2.3e-07
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A +
Sbjct: 207 GILADEMGLGKTLQTIALL 225
Score = 55 (24.4 bits), Expect = 2.3e-07, Sum P(4) = 2.3e-07
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALN 553
+LLN L++LR+ C HP + G P + DE ++ GK + L KL+ L
Sbjct: 451 RLLNILMQLRKCCNHPYL-FDGAEP--GPPYTTDEHIVSNSGKMVV-----LDKLLAKLK 502
Query: 554 GLAGIALIEKNLSQAVSLYKE 574
LI +++ + + ++
Sbjct: 503 EQGSRVLIFSQMTRLLDILED 523
Score = 42 (19.8 bits), Expect = 2.3e-07, Sum P(4) = 2.3e-07
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 979 RAHDEIRMATTRLHLKEDDNDTSVDALSPDELASA-SVTNSSEKFISM 1025
R ++ R+ H + +D V+ L E A +V NSS +FI M
Sbjct: 528 RGYEYCRLDGQTPHEEREDKFLEVELLGQREAIEAFNVPNSS-RFIFM 574
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 135 (52.6 bits), Expect = 2.5e-07, Sum P(4) = 2.5e-07
Identities = 36/127 (28%), Positives = 61/127 (48%)
Query: 321 FWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
F WR + +DEA +++ + +E+ + +R +TGTP+Q L +L+ LL FL F
Sbjct: 306 FHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVF 365
Query: 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ + + GD +E H K + R K V E LPP++E +L S
Sbjct: 366 NSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDV--EKSLPPKKEIKIYLGLS 423
Query: 440 PIEEHFY 446
++ +Y
Sbjct: 424 KMQREWY 430
Score = 69 (29.3 bits), Expect = 2.5e-07, Sum P(4) = 2.5e-07
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A +
Sbjct: 207 GILADEMGLGKTLQTIALL 225
Score = 55 (24.4 bits), Expect = 2.5e-07, Sum P(4) = 2.5e-07
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALN 553
+LLN L++LR+ C HP + G P + DE ++ GK + L KL+ L
Sbjct: 451 RLLNILMQLRKCCNHPYL-FDGAEP--GPPYTTDEHIVSNSGKMVV-----LDKLLAKLK 502
Query: 554 GLAGIALIEKNLSQAVSLYKE 574
LI +++ + + ++
Sbjct: 503 EQGSRVLIFSQMTRLLDILED 523
Score = 42 (19.8 bits), Expect = 2.5e-07, Sum P(4) = 2.5e-07
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 979 RAHDEIRMATTRLHLKEDDNDTSVDALSPDELASA-SVTNSSEKFISM 1025
R ++ R+ H + +D V+ L E A +V NSS +FI M
Sbjct: 528 RGYEYCRLDGQTPHEEREDKFLEVELLGQREAIEAFNVPNSS-RFIFM 574
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 135 (52.6 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 36/127 (28%), Positives = 61/127 (48%)
Query: 321 FWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
F WR + +DEA +++ + +E+ + +R +TGTP+Q L +L+ LL FL F
Sbjct: 307 FHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVF 366
Query: 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ + + GD +E H K + R K V E LPP++E +L S
Sbjct: 367 NSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDV--EKSLPPKKEIKIYLGLS 424
Query: 440 PIEEHFY 446
++ +Y
Sbjct: 425 KMQREWY 431
Score = 69 (29.3 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A +
Sbjct: 208 GILADEMGLGKTLQTIALL 226
Score = 53 (23.7 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALN 553
+LLN L++LR+ C HP + G P + DE ++ GK AL KL+ +
Sbjct: 452 RLLNILMQLRKCCNHPYL-FDGAEP--GPPYTTDEHIVGNSGKMV-----ALDKLLARIK 503
Query: 554 GLAGIALIEKNLSQAVSLYKE 574
LI +++ + + ++
Sbjct: 504 EQGSRVLIFSQMTRLLDILED 524
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 142 (55.0 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 49/200 (24%), Positives = 88/200 (44%)
Query: 319 RIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 378
R+ W + LDEAQ ++S+ + ++ L+ ++R +TGTPIQ + +L+ LL F+ +
Sbjct: 644 RVKWQYMVLDEAQALKSSTSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 703
Query: 379 FS----ISRWWIEVIRDPYENG---DVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEE 431
F + W+ + I EN D + H K M R K V +EL +
Sbjct: 704 FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENELS-----D 758
Query: 432 CVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAE 491
+ LT+ + R + Q LK+ I ++ + A H+
Sbjct: 759 KIEILTYCQLTSR------------QRLLYQALKNKISIEDLLQSSMGSAQQ----AHST 802
Query: 492 AAKLLNSLLKLRQACCHPQV 511
+ L+N +++ R+ C HP +
Sbjct: 803 TSSLMNLVMQFRKVCNHPDL 822
Score = 75 (31.5 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 83 GILADEMGLGKTVELLACIFAH 104
GILADEMGLGKTV+ +A + AH
Sbjct: 540 GILADEMGLGKTVQSIA-LLAH 560
Score = 45 (20.9 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 18/75 (24%), Positives = 30/75 (40%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGAD---- 277
G LI+ PA L W E +R P K Y G + L +
Sbjct: 569 GPFLIISPASTLNNWHQEFSRFV-P-KFKVLPYWGNPHDRKVIRKFWSQKTLYTQNAPFH 626
Query: 278 IVLTTYDVLKEDLSH 292
+V+T+Y ++ +D+ +
Sbjct: 627 VVITSYQLVVQDVKY 641
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 133 (51.9 bits), Expect = 4.5e-07, Sum P(3) = 4.5e-07
Identities = 36/127 (28%), Positives = 60/127 (47%)
Query: 321 FWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
F WR + +DEA +++ + +E+ +R +TGTP+Q L +L+ LL FL F
Sbjct: 227 FNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVF 286
Query: 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ + + GD +E H K + R K V E LPP++E +L S
Sbjct: 287 NSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKAEV--EKSLPPKKEVKIYLGLS 344
Query: 440 PIEEHFY 446
++ +Y
Sbjct: 345 KMQREWY 351
Score = 69 (29.3 bits), Expect = 4.5e-07, Sum P(3) = 4.5e-07
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A +
Sbjct: 128 GILADEMGLGKTLQTIALL 146
Score = 52 (23.4 bits), Expect = 4.5e-07, Sum P(3) = 4.5e-07
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 494 KLLNSLLKLRQACCHP 509
+LLN L++LR+ C HP
Sbjct: 372 RLLNILMQLRKCCNHP 387
>UNIPROTKB|H0YJG4 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135744 EMBL:AL161747
HGNC:HGNC:20153 Ensembl:ENST00000555935 Uniprot:H0YJG4
Length = 873
Score = 123 (48.4 bits), Expect = 4.9e-07, Sum P(6) = 4.9e-07
Identities = 36/135 (26%), Positives = 66/135 (48%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L I W + +DEA +++ + + +H+ +TGTP+Q +++L+ LL FL+
Sbjct: 163 LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 222
Query: 377 SPFSISRWWIEVIRDPYENGDVGAMEFTHKF---FKEIMCRSSKVHVSDELQLPPQEECV 433
S F E ++D GD+ E K K +M R K V E L P++E +
Sbjct: 223 SQFPSES---EFLKD---FGDLKTEEQVQKLQAILKPMMLRRLKEDV--EKNLAPKQETI 274
Query: 434 SWLTFSPIEEHFYQS 448
+ + I++ +Y++
Sbjct: 275 IEVELTNIQKKYYRA 289
Score = 63 (27.2 bits), Expect = 4.9e-07, Sum P(6) = 4.9e-07
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ +A
Sbjct: 59 ILADEMGLGKTIQSIA 74
Score = 57 (25.1 bits), Expect = 4.9e-07, Sum P(6) = 4.9e-07
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 489 HAEAAKLLNSLLKLRQACCHP 509
H LLN++++LR+ C HP
Sbjct: 304 HTNMPNLLNTMMELRKCCNHP 324
Score = 48 (22.0 bits), Expect = 4.9e-07, Sum P(6) = 4.9e-07
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGA 257
G L++ P + W+ E T + T +Y G+
Sbjct: 86 GPFLVIAPLSTITNWEREFNTWTE---MNTIVYHGS 118
Score = 43 (20.2 bits), Expect = 4.9e-07, Sum P(6) = 4.9e-07
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 770 LNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRM 828
L+K+ + R +I+G+ + ++ L RK ++E D K EED+D++
Sbjct: 503 LDKAVLQSMSGRDGNITGIQQFSKKEIEDL--LRKGAYAAIMEEDDEGSKFCEEDIDQI 559
Score = 37 (18.1 bits), Expect = 4.9e-07, Sum P(6) = 4.9e-07
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 882 NSSLNRFYWYLSQPNKNSTSSSVGNEEI 909
+ ++ F W L P +N + + N +
Sbjct: 723 DENIKGFIWDLISPAENGKTKELQNHSV 750
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 117 (46.2 bits), Expect = 4.9e-07, Sum P(4) = 4.9e-07
Identities = 35/140 (25%), Positives = 61/140 (43%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L +W + +DE +++ R A ++ +TGTP+Q L +L+ LL FL
Sbjct: 343 LQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLP 402
Query: 377 SPF----SISRWW-IEVIRDPYEN-----GDVGAMEFTHKFFKEIMCRSSKVHVSDELQL 426
F S W+ I + + E+ + + H+ + R K V+ L++
Sbjct: 403 DVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVA--LEV 460
Query: 427 PPQEECVSWLTFSPIEEHFY 446
PP+ E V + S +E FY
Sbjct: 461 PPKREVVVYAPLSKKQEIFY 480
Score = 74 (31.1 bits), Expect = 4.9e-07, Sum P(4) = 4.9e-07
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKTV+ +A I
Sbjct: 244 GILADEMGLGKTVQCIATI 262
Score = 52 (23.4 bits), Expect = 4.9e-07, Sum P(4) = 4.9e-07
Identities = 18/69 (26%), Positives = 31/69 (44%)
Query: 226 IVC-PAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGA----DIVL 280
+VC P L W AE R T P + T +Y G + + +I + G +V+
Sbjct: 275 LVCGPLSTLPNWMAEFKRFT-P-DIPTMLYHGTQEER--QKLVRNIYKRKGTLQIHPVVI 330
Query: 281 TTYDVLKED 289
T++++ D
Sbjct: 331 TSFEIAMRD 339
Score = 51 (23.0 bits), Expect = 4.9e-07, Sum P(4) = 4.9e-07
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGK 536
KL N ++ LR+ C HP + + + Q +DE L+ GK
Sbjct: 559 KLQNIMMLLRKCCNHPYLIEYPIDPVTQE-FKIDEELVTNSGK 600
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 117 (46.2 bits), Expect = 4.9e-07, Sum P(4) = 4.9e-07
Identities = 35/140 (25%), Positives = 61/140 (43%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L +W + +DE +++ R A ++ +TGTP+Q L +L+ LL FL
Sbjct: 344 LQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLP 403
Query: 377 SPF----SISRWW-IEVIRDPYEN-----GDVGAMEFTHKFFKEIMCRSSKVHVSDELQL 426
F S W+ I + + E+ + + H+ + R K V+ L++
Sbjct: 404 DVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVA--LEV 461
Query: 427 PPQEECVSWLTFSPIEEHFY 446
PP+ E V + S +E FY
Sbjct: 462 PPKREVVVYAPLSKKQEIFY 481
Score = 74 (31.1 bits), Expect = 4.9e-07, Sum P(4) = 4.9e-07
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKTV+ +A I
Sbjct: 245 GILADEMGLGKTVQCIATI 263
Score = 52 (23.4 bits), Expect = 4.9e-07, Sum P(4) = 4.9e-07
Identities = 18/69 (26%), Positives = 31/69 (44%)
Query: 226 IVC-PAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGA----DIVL 280
+VC P L W AE R T P + T +Y G + + +I + G +V+
Sbjct: 276 LVCGPLSTLPNWMAEFQRFT-P-DIPTMLYHGTQQERRK--LVKNIHKRKGTLQIHPVVI 331
Query: 281 TTYDVLKED 289
T++++ D
Sbjct: 332 TSFEIAMRD 340
Score = 51 (23.0 bits), Expect = 4.9e-07, Sum P(4) = 4.9e-07
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGK 536
KL N ++ LR+ C HP + + + Q +DE L+ GK
Sbjct: 560 KLQNIMMLLRKCCNHPYLIEYPIDPVTQE-FKIDEELVTNSGK 601
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 131 (51.2 bits), Expect = 4.9e-07, Sum P(3) = 4.9e-07
Identities = 35/130 (26%), Positives = 63/130 (48%)
Query: 321 FWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
F WR + +DEA +++ + +E+ + +R +TGTP+Q L +L+ LL FL F
Sbjct: 315 FHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVF 374
Query: 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ + + GD +E H K + R K V E LPP++E +L S
Sbjct: 375 NSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDV--EKSLPPKKEIKVYLGLS 432
Query: 440 PIEEHFYQSQ 449
++ ++ ++
Sbjct: 433 KMQREWWYTK 442
Score = 69 (29.3 bits), Expect = 4.9e-07, Sum P(3) = 4.9e-07
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A +
Sbjct: 216 GILADEMGLGKTLQTIALL 234
Score = 55 (24.4 bits), Expect = 4.9e-07, Sum P(3) = 4.9e-07
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALN 553
+LLN L++LR+ C HP + G P + DE ++ GK + L KL+ L
Sbjct: 461 RLLNILMQLRKCCNHPYL-FDGAEP--GPPYTTDEHIVSNSGKMVV-----LDKLLAKLK 512
Query: 554 GLAGIALIEKNLSQAVSLYKE 574
LI +++ + + ++
Sbjct: 513 EQGSRVLIFSQMTRLLDILED 533
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 118 (46.6 bits), Expect = 6.0e-07, Sum P(4) = 6.0e-07
Identities = 35/141 (24%), Positives = 62/141 (43%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLK 375
+L +W + +DE +++ R A ++ +TGTP+Q L +L+ LL FL
Sbjct: 342 VLQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLL 401
Query: 376 SSPF----SISRWW-IEVIRDPYEN-----GDVGAMEFTHKFFKEIMCRSSKVHVSDELQ 425
F S W+ I + + E+ + + H+ + R K V+ L+
Sbjct: 402 PDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVA--LE 459
Query: 426 LPPQEECVSWLTFSPIEEHFY 446
+PP+ E V + S +E FY
Sbjct: 460 VPPKREVVVYAPLSKKQEVFY 480
Score = 74 (31.1 bits), Expect = 6.0e-07, Sum P(4) = 6.0e-07
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKTV+ +A I
Sbjct: 244 GILADEMGLGKTVQCIATI 262
Score = 51 (23.0 bits), Expect = 6.0e-07, Sum P(4) = 6.0e-07
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGK 536
KL N ++ LR+ C HP + + + Q +DE L+ GK
Sbjct: 559 KLQNIMMLLRKCCNHPYLIEYPIDPVTQE-FKIDEELVTNSGK 600
Score = 50 (22.7 bits), Expect = 6.0e-07, Sum P(4) = 6.0e-07
Identities = 18/69 (26%), Positives = 31/69 (44%)
Query: 226 IVC-PAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGA----DIVL 280
+VC P L W AE R T P + T +Y G++ + I + G +V+
Sbjct: 275 LVCGPLSTLPNWMAEFQRFT-P-EIPTMLYHGSQQERRK--LVNHIHKRKGTLQIHPVVI 330
Query: 281 TTYDVLKED 289
T++++ D
Sbjct: 331 TSFEIAMRD 339
>TAIR|locus:2062840 [details] [associations]
symbol:SYD "SPLAYED" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009908 "flower development"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=IPI] [GO:0010199 "organ
boundary specification between lateral organs and the meristem"
evidence=IGI] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=NAS] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=RCA;IMP] [GO:0009611 "response to wounding"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000226
"microtubule cytoskeleton organization" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006306
"DNA methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0050826 "response to
freezing" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00951 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0009611 GO:GO:0006355
GO:GO:0003677 GO:GO:0003682 GO:GO:0016887 GO:GO:0004386
GO:GO:0009908 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0010199 GO:GO:0040029 InterPro:IPR014012
PROSITE:PS51204 IPI:IPI00516285 RefSeq:NP_850116.1 UniGene:At.22414
PRIDE:F4IHS2 EnsemblPlants:AT2G28290.1 GeneID:817375
KEGG:ath:AT2G28290 OMA:SDLYAIS Uniprot:F4IHS2
Length = 3574
Score = 128 (50.1 bits), Expect = 6.3e-07, Sum P(4) = 6.3e-07
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFLK 375
L++I W I +DE ++ NA+ L+ Y + HR +TGTP+Q L++L+ LL FL
Sbjct: 873 LSKIHWHYIIIDEGHRIK-NASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWALLNFLL 931
Query: 376 SSPFSISRWWIEVIRDPYE-NGDVGAME 402
+ F+ S + + P++ NG+ A E
Sbjct: 932 PNIFNSSEDFSQWFNKPFQSNGESSAEE 959
Score = 78 (32.5 bits), Expect = 6.3e-07, Sum P(4) = 6.3e-07
Identities = 23/70 (32%), Positives = 36/70 (51%)
Query: 83 GILADEMGLGKTVELLACIFAHRKPASDDSIF---IDTAVQVTDDQKVNLRRLKRERVEC 139
GILADEMGLGKTV++++ I + +D F + ++V ++N ++
Sbjct: 775 GILADEMGLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWQSEINFWAPSIHKI-V 833
Query: 140 ICGAVSESRK 149
CG E RK
Sbjct: 834 YCGTPDERRK 843
Score = 65 (27.9 bits), Expect = 6.3e-07, Sum P(4) = 6.3e-07
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 896 NKNSTSSSVGNEEIKRRDVRETVVVSKSPSELEVILGVIKN 936
N+NS S +E +++RD R+ V + S++E+ +++N
Sbjct: 2740 NRNSLSHCEPSEVVEQRDSRDQVCIGSVESQVEISSAILEN 2780
Score = 52 (23.4 bits), Expect = 0.00020, Sum P(4) = 0.00020
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G L+V P+ +L W +EI P S+ +Y G + + + +++LT
Sbjct: 804 GPFLVVVPSSVLPGWQSEIN-FWAP-SIHKIVYCGTPDERRKLFKEQIVHQKF--NVLLT 859
Query: 282 TYDVLKEDLSHD 293
TY+ L HD
Sbjct: 860 TYEYLMN--KHD 869
Score = 48 (22.0 bits), Expect = 6.3e-07, Sum P(4) = 6.3e-07
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 487 ITHAEAAKLLNSLLKLRQACCHP 509
I +A++ + NS+++LR C HP
Sbjct: 1024 IGNAKSRAVHNSVMELRNICNHP 1046
Score = 47 (21.6 bits), Expect = 3.4e-05, Sum P(4) = 3.4e-05
Identities = 30/134 (22%), Positives = 57/134 (42%)
Query: 892 LSQPNKNSTSSSVGNEEIKRRDVRETVVVSKSP-SELEVI---LGVIKNYCKTQLGREAI 947
LSQ + TS + G+ + DV + V K SE ++ +G +T + +A
Sbjct: 1847 LSQEIRRDTSGTGGSARKQTADVTDVARVMKEIFSETSLLKHKVGEPSATTRTNVP-DAQ 1905
Query: 948 SASSKQLHILEAMRKEYANARSLATAQAQFLRAHDEIRMATTRLHLKEDDNDTSVDALSP 1007
S LH +E + E ++ L +A + + + ++ + H D TS +
Sbjct: 1906 SPGEMNLHTVETHKAE--DSSGLKNQEALYNLSKAD-KLVSDIPHPVPGDLTTSGSVANK 1962
Query: 1008 D-ELASASVTNSSE 1020
D ++ S+ V +E
Sbjct: 1963 DVDIGSSKVAAENE 1976
Score = 41 (19.5 bits), Expect = 0.00013, Sum P(4) = 0.00013
Identities = 15/74 (20%), Positives = 30/74 (40%)
Query: 598 HNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDENAR-KCQRVSREENSD-F 655
H L +I +N ++ E PG +H + ++ E++ +
Sbjct: 2814 HQLADIQAEPSNLVDQMDIEESKEPGTESADVSLHQLADIQPGPSILVDQMDTEKSKEPG 2873
Query: 656 TDAEDPSGH-LSDL 668
T++ D S H L+D+
Sbjct: 2874 TESADVSLHQLADI 2887
Score = 37 (18.1 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 410 EIMCRSSKVHVSDELQLPPQEECV 433
E++ S++ ++QLPP E V
Sbjct: 2977 ELVDVSAECSTEPQVQLPPSSEPV 3000
>UNIPROTKB|D3ZZZ1 [details] [associations]
symbol:Ercc6 "Protein Ercc6" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311509
GO:GO:0005524 GO:GO:0008630 GO:GO:0005730 GO:GO:0006284
GO:GO:0003677 GO:GO:0009636 GO:GO:0003682 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257
GO:GO:0006283 GO:GO:0008094 GO:GO:0008023 GO:GO:0032786
GO:GO:0006290 GO:GO:0007256 GO:GO:0000303 IPI:IPI00358023
Ensembl:ENSRNOT00000038493 ArrayExpress:D3ZZZ1 Uniprot:D3ZZZ1
Length = 1475
Score = 92 (37.4 bits), Expect = 7.4e-07, Sum P(5) = 7.4e-07
Identities = 32/144 (22%), Positives = 59/144 (40%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRF--- 373
++R W + LDE + + AA T + HR ++G+P+Q L +L+ L F
Sbjct: 629 ISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFTFP 688
Query: 374 --LKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKF-------FKEIMCRSSKVHVSDEL 424
L + P + ++ + + Y N ++ +K + R K V L
Sbjct: 689 GKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSL 748
Query: 425 QLPPQEECVSWLTFSPIEEHFYQS 448
LP + E V + + + YQ+
Sbjct: 749 SLPDKNEQVLFCRLTDEQHKVYQN 772
Score = 76 (31.8 bits), Expect = 7.4e-07, Sum P(5) = 7.4e-07
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 222 GATLIVCPAPILAQWDAEITRHTR-PGSLKTCIYEGARNSSLSDTSIMDISELVGADIVL 280
G TLIVCP ++ QW E HT P ++E + + + DI G +++
Sbjct: 561 GPTLIVCPTTVMHQWVKEF--HTWWPPFRVAILHETGSCAHRKERLVRDIVHCHG--VLI 616
Query: 281 TTYDVLKEDLSHDSDRHE 298
T+Y ++ + D RH+
Sbjct: 617 TSYSYIRL-MQDDISRHD 633
Score = 75 (31.5 bits), Expect = 7.4e-07, Sum P(5) = 7.4e-07
Identities = 13/18 (72%), Positives = 17/18 (94%)
Query: 82 GGILADEMGLGKTVELLA 99
GGIL DEMGLGKT++++A
Sbjct: 521 GGILGDEMGLGKTIQIIA 538
Score = 52 (23.4 bits), Expect = 7.4e-07, Sum P(5) = 7.4e-07
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 702 QKYLSGFSVKLSVAQQ-EFRKSYMQVCN 728
Q+ L F KLSVAQ FR+ +CN
Sbjct: 1430 QEILQAFESKLSVAQSCVFRELLRNLCN 1457
Score = 51 (23.0 bits), Expect = 7.4e-07, Sum P(5) = 7.4e-07
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 479 SDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSP 523
S A+Y I + E ++ + L+ LR+ C HP + S G ++ P
Sbjct: 776 SKAVYR--ILNGEN-QIFSGLVALRKICNHPDLFSGGPKNTSALP 817
Score = 37 (18.1 bits), Expect = 2.0e-05, Sum P(5) = 2.0e-05
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 922 KSPSELEVILGVIKNYCKTQLGREAISASSKQ-LHILEAMRKEY 964
K ++ V+ ++K + K Q R + + S+Q LHILE + +
Sbjct: 830 KRSGKMIVVESLLKIWHK-QGQRVLLFSQSRQMLHILEVFLRAH 872
>UNIPROTKB|E2QSK6 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0010332 "response to gamma
radiation" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009636 "response to toxic substance" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0045494 GO:GO:0010332
GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
GO:GO:0008094 GO:GO:0008023 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
OMA:NGEMQIF GO:GO:0000303 EMBL:AAEX03015368 RefSeq:XP_534944.2
UniGene:Cfa.1909 Ensembl:ENSCAFT00000010674 GeneID:477747
KEGG:cfa:477747 NextBio:20853169 Uniprot:E2QSK6
Length = 1486
Score = 92 (37.4 bits), Expect = 7.7e-07, Sum P(5) = 7.7e-07
Identities = 32/144 (22%), Positives = 59/144 (40%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRF--- 373
++R W + LDE + + AA T + HR ++G+P+Q L +L+ L F
Sbjct: 631 ISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFP 690
Query: 374 --LKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKF-------FKEIMCRSSKVHVSDEL 424
L + P + ++ + + Y N ++ +K + R K V L
Sbjct: 691 GKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSL 750
Query: 425 QLPPQEECVSWLTFSPIEEHFYQS 448
LP + E V + + + YQ+
Sbjct: 751 SLPDKNEQVLFCRLTEEQHKVYQN 774
Score = 81 (33.6 bits), Expect = 7.7e-07, Sum P(5) = 7.7e-07
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 222 GATLIVCPAPILAQWDAEITRHTR-PGSLKTCIYEGARNSSLSDTSIMDISELVGADIVL 280
G T+IVCP ++ QW E HT P ++E + + I DI+ G I++
Sbjct: 563 GPTIIVCPTTVMHQWVKEF--HTWWPPFRVAILHETGSYTQKKEKLIRDIAHCHG--ILI 618
Query: 281 TTYDVLKEDLSHDSDRHE 298
T+Y ++ + D RH+
Sbjct: 619 TSYSYIRL-MQDDISRHD 635
Score = 75 (31.5 bits), Expect = 7.7e-07, Sum P(5) = 7.7e-07
Identities = 13/18 (72%), Positives = 17/18 (94%)
Query: 82 GGILADEMGLGKTVELLA 99
GGIL DEMGLGKT++++A
Sbjct: 523 GGILGDEMGLGKTIQIIA 540
Score = 55 (24.4 bits), Expect = 7.7e-07, Sum P(5) = 7.7e-07
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSP 523
++ + L+ LR+ C HP + S G ++L+ P
Sbjct: 790 QIFSGLVALRKICNHPDLFSGGPKNLKTIP 819
Score = 43 (20.2 bits), Expect = 7.7e-07, Sum P(5) = 7.7e-07
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 967 ARSLATAQAQFLRAHDEIRMATTRLHLKED-------DNDTSVDALSPDELASASVTNSS 1019
++S T+ A F E++ T +LHLK D++ + PD AS + T SS
Sbjct: 1008 SQSTETS-AIFAGTGSEVQ--TPKLHLKRKLPPAFGADHNIPICRKFPDSNASTNDTTSS 1064
Query: 1020 E-KF 1022
E KF
Sbjct: 1065 EEKF 1068
Score = 41 (19.5 bits), Expect = 1.2e-06, Sum P(5) = 1.2e-06
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 745 LHHAEGNKDFSAELIRKIEEAISGSLNKSRALRTASRYRSISGLTYHIQSSLDQLEASR 803
L AE N+ + + ++ + + L S + T + +R ISG I+S Q S+
Sbjct: 1274 LVEAEANR-VAQDALKALRLSRQQCLGASSGVPTWTGHRGISGAPAGIKSRFGQKRNSK 1331
>UNIPROTKB|J9P6Y8 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AETHENE EMBL:AAEX03002026 Ensembl:ENSCAFT00000043995
Uniprot:J9P6Y8
Length = 1782
Score = 121 (47.7 bits), Expect = 8.8e-07, Sum P(5) = 8.8e-07
Identities = 34/126 (26%), Positives = 59/126 (46%)
Query: 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
W I +DEA ++++ + + + + HR ITGTP+Q L +L+ LL F+ FS
Sbjct: 590 WAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFS- 648
Query: 382 SRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPI 441
W E + + G HK + + R K V E LP + E + + S +
Sbjct: 649 -SW--EDFEEEHGKGREYGYASLHKELEPFLLRRVKKDV--EKSLPAKVEQILRMEMSAL 703
Query: 442 EEHFYQ 447
++ +Y+
Sbjct: 704 QKQYYK 709
Score = 66 (28.3 bits), Expect = 8.8e-07, Sum P(5) = 8.8e-07
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG---ARNSSLSDTSIMDISELVGADI 278
G L+V P L W EI T + +Y G +RN + + ++ + +I
Sbjct: 513 GPFLLVVPLSTLTSWQREI--QTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNI 570
Query: 279 VLTTYDVLKED 289
+LTTY++L +D
Sbjct: 571 LLTTYEILLKD 581
Score = 61 (26.5 bits), Expect = 8.8e-07, Sum P(5) = 8.8e-07
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ ++
Sbjct: 485 ILADEMGLGKTIQTIS 500
Score = 52 (23.4 bits), Expect = 8.8e-07, Sum P(5) = 8.8e-07
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 603 ILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDENARKCQR-----VSREENSDFTD 657
+LP + NCA ++S N + + ++ E R +R + RE F+D
Sbjct: 1051 MLPRMRNCAKQISFNGSEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSD 1110
Query: 658 AE 659
AE
Sbjct: 1111 AE 1112
Score = 48 (22.0 bits), Expect = 8.8e-07, Sum P(5) = 8.8e-07
Identities = 27/107 (25%), Positives = 46/107 (42%)
Query: 850 ESFQDYEARLFRLKKSQGDIASAEEAVDLQK--KNSSLNRFYWYLSQPNKNSTSSSVGNE 907
E +D + + F+ K+ +EA+ +K K LN S+ + S SSV +
Sbjct: 1409 EDKKDIKEKDFKEKREN----KVKEAIQKEKDIKEEKLNESK---SESKERSKKSSVSDA 1461
Query: 908 EIKRRDVRETVVVSKSPSELEVILGVIKNYCKTQLGREAISASSKQL 954
+ E V +S+ EL+ I CK ++ + A+ KQL
Sbjct: 1462 PVHITASGEPVPISEESEELDQKTFSI---CKERM--RPVKAALKQL 1503
Score = 46 (21.3 bits), Expect = 1.4e-06, Sum P(5) = 1.4e-06
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 752 KDFSAELIRKIEEAISGS-------LNKSRA-LRTASRYRSISGLTYHIQSSLDQLEASR 803
KDF + K++EAI LN+S++ + S+ S+S HI +S + + S
Sbjct: 1417 KDFKEKRENKVKEAIQKEKDIKEEKLNESKSESKERSKKSSVSDAPVHITASGEPVPISE 1476
Query: 804 KT 805
++
Sbjct: 1477 ES 1478
Score = 38 (18.4 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 797 DQLEASRKTLLDRLL-EIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQ 853
++L A K + L E + ++P+E D+D + + GP+ V EL F+
Sbjct: 945 EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFK 1002
Score = 38 (18.4 bits), Expect = 0.00013, Sum P(5) = 0.00013
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 185 KKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPV 219
K+ +R++ N+ ++ E + D+L+E V
Sbjct: 211 KRSSRRQATVNVSYKEDEEMKTDSDDLLEVCGEDV 245
>MGI|MGI:106209 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0001655 "urogenital system development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0006306 "DNA methylation" evidence=IMP]
[GO:0006342 "chromatin silencing" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030098 "lymphocyte differentiation"
evidence=TAS] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106209 GO:GO:0005524
GO:GO:0005634 GO:GO:0043066 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 HOGENOM:HOG000172362 OMA:ETFYTAI GO:GO:0006346
GO:GO:0030098 GO:GO:0046651 CTD:3070 HOVERGEN:HBG060049
OrthoDB:EOG4SN1N4 EMBL:U25691 EMBL:AF155210 EMBL:AK013266
EMBL:AK147126 EMBL:BC020056 EMBL:BC100394 IPI:IPI00121431
IPI:IPI00808497 PIR:JC4666 RefSeq:NP_032260.2 UniGene:Mm.392920
UniGene:Mm.486446 UniGene:Mm.57223 ProteinModelPortal:Q60848
SMR:Q60848 DIP:DIP-43735N IntAct:Q60848 MINT:MINT-2521001
STRING:Q60848 PhosphoSite:Q60848 PaxDb:Q60848 PRIDE:Q60848
DNASU:15201 Ensembl:ENSMUST00000025965 GeneID:15201 KEGG:mmu:15201
UCSC:uc008hjt.1 GeneTree:ENSGT00550000075106 InParanoid:Q60848
NextBio:287739 Bgee:Q60848 CleanEx:MM_HELLS Genevestigator:Q60848
GermOnline:ENSMUSG00000025001 Uniprot:Q60848
Length = 821
Score = 111 (44.1 bits), Expect = 9.4e-07, Sum P(4) = 9.4e-07
Identities = 34/140 (24%), Positives = 60/140 (42%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L +W + +DE +++ R A ++ +TGTP+Q L +L+ LL FL
Sbjct: 326 LQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLP 385
Query: 377 SPF----SISRWW-IEVIRDPYEN-----GDVGAMEFTHKFFKEIMCRSSKVHVSDELQL 426
F S W+ I + + E+ + + H+ + R K V+ L++
Sbjct: 386 DVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVA--LEV 443
Query: 427 PPQEECVSWLTFSPIEEHFY 446
PP+ E V + +E FY
Sbjct: 444 PPKREVVVYAPLCNKQEIFY 463
Score = 74 (31.1 bits), Expect = 9.4e-07, Sum P(4) = 9.4e-07
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKTV+ +A I
Sbjct: 227 GILADEMGLGKTVQCIATI 245
Score = 55 (24.4 bits), Expect = 9.4e-07, Sum P(4) = 9.4e-07
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 226 IVC-PAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGA----DIVL 280
+VC P L W AE R T P + T +Y G R + +I + G +V+
Sbjct: 258 LVCGPLSTLPNWMAEFKRFT-P-EIPTLLYHGTREDRRK--LVKNIHKRQGTLQIHPVVV 313
Query: 281 TTYDVLKED 289
T++++ D
Sbjct: 314 TSFEIAMRD 322
Score = 51 (23.0 bits), Expect = 9.4e-07, Sum P(4) = 9.4e-07
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGK 536
KL N ++ LR+ C HP + + + Q +DE L+ GK
Sbjct: 542 KLRNIMMLLRKCCNHPYMIEYPIDPVTQE-FKIDEELVTNSGK 583
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 128 (50.1 bits), Expect = 9.9e-07, Sum P(4) = 9.9e-07
Identities = 42/177 (23%), Positives = 78/177 (44%)
Query: 277 DIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQK---RYPVI---PTLLTRIFWWRICLDEA 330
++V+ DV+ D+ + G + M+ Y ++ L+ I W + +DEA
Sbjct: 481 NLVVYMGDVVSRDMIRQYEWFVGGTKKMKINAILTTYEILLKDKAFLSSIDWAALLVDEA 540
Query: 331 QMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIR 390
++++ + + + H+ ITGTP+Q L +L+ LL F+ F W E
Sbjct: 541 HRLKNDESLLYKSLTQFRFNHKLLITGTPLQNSLKELWALLHFIMPEKFDC---WEEFET 597
Query: 391 DPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQ 447
E+ G + HK + + R K V E LPP+ E + + + ++ FY+
Sbjct: 598 AHNESNHKG-ISALHKKLEPFLLRRVKKDV--EKSLPPKTEQILRVDMTAHQKQFYK 651
Score = 69 (29.3 bits), Expect = 9.9e-07, Sum P(4) = 9.9e-07
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 84 ILADEMGLGKTVE---LLACIFAHR 105
ILADEMGLGKT++ LLA +F HR
Sbjct: 427 ILADEMGLGKTIQSISLLASLF-HR 450
Score = 53 (23.7 bits), Expect = 9.9e-07, Sum P(4) = 9.9e-07
Identities = 25/114 (21%), Positives = 50/114 (43%)
Query: 803 RKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQDYEARLFRL 862
RK + +++E D + +E+D + + + VG+ I +SF+ + L RL
Sbjct: 991 RKQPIPQVVEDDDGDDDEEEDDTGKKKKKK---AVGNFTIPEIKRFIKSFRKFSMPLNRL 1047
Query: 863 KKSQGDIASAEEAVDLQKKN-SSLNRFYWYLSQP-NKNSTSSSVGNEEIKRRDV 914
++ D E + D KK SL+ + + N + G E +++D+
Sbjct: 1048 EEIAQDAELEEHSTDEMKKLVESLSEACKKAADEFDSNEKNGDAGAAESEKKDI 1101
Score = 51 (23.0 bits), Expect = 9.9e-07, Sum P(4) = 9.9e-07
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 757 ELIRKIEEAISGSLNKSRALRTASRYRSISGLTYHI----QSSLDQL-EASRKT-LLDRL 810
EL + ++ +I+G +N L+ + S++ HI Q L QL ++S K LLD+L
Sbjct: 660 ELSKGVKGSINGFVNLVMELKKCCNHASLTRQYDHIYDDAQGRLQQLLKSSGKLILLDKL 719
Query: 811 L 811
L
Sbjct: 720 L 720
>UNIPROTKB|H9L0N0 [details] [associations]
symbol:H9L0N0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02032856 EMBL:AADN02032857
EMBL:AADN02032858 EMBL:AADN02032859 EMBL:AADN02032860
EMBL:AADN02032861 EMBL:AADN02032862 EMBL:AADN02032863
EMBL:AADN02032864 EMBL:AADN02032865 Ensembl:ENSGALT00000023599
Uniprot:H9L0N0
Length = 1444
Score = 122 (48.0 bits), Expect = 1.0e-06, Sum P(4) = 1.0e-06
Identities = 34/126 (26%), Positives = 59/126 (46%)
Query: 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
W I +DEA ++++ + + + + HR ITGTP+Q L +L+ LL F+ FS
Sbjct: 283 WVFIGIDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFS- 341
Query: 382 SRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPI 441
W E + + G HK + + R K V E LP + E + + S +
Sbjct: 342 -SW--EDFEEEHGKGREFGYASLHKELEPFLLRRVKKDV--EKSLPAKVEQILRMEMSAL 396
Query: 442 EEHFYQ 447
++ +Y+
Sbjct: 397 QKQYYK 402
Score = 66 (28.3 bits), Expect = 1.0e-06, Sum P(4) = 1.0e-06
Identities = 21/73 (28%), Positives = 35/73 (47%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG---ARNSSLSDTSIMDISELVGADI 278
G L+V P L W EI T + +Y G +RN + + ++ + +I
Sbjct: 206 GPFLLVVPLSTLTSWQREI--QTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNI 263
Query: 279 VLTTYDVLKEDLS 291
+LTTY++L +D S
Sbjct: 264 LLTTYEILLKDKS 276
Score = 61 (26.5 bits), Expect = 1.0e-06, Sum P(4) = 1.0e-06
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ ++
Sbjct: 178 ILADEMGLGKTIQTIS 193
Score = 52 (23.4 bits), Expect = 1.0e-06, Sum P(4) = 1.0e-06
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 603 ILPMVANCATELSQNEQHFPGCSE-KAFKIHSIETCDENARKCQR-----VSREENSDFT 656
+LP + NCA ++S N CS + + ++ E R +R + RE F+
Sbjct: 745 MLPRMRNCAKQISFNGNE-GRCSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFS 803
Query: 657 DAE 659
DAE
Sbjct: 804 DAE 806
Score = 44 (20.5 bits), Expect = 6.0e-06, Sum P(4) = 6.0e-06
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 891 YLSQPNKNSTSSSVGNEEIKRRDVRETVVVSKSPS 925
YLS KN + G E I + ETV + ++PS
Sbjct: 652 YLS---KNLIKETEGKEGIPGQTALETVKLKRAPS 683
>UNIPROTKB|H7C2W2 [details] [associations]
symbol:SHPRH "E3 ubiquitin-protein ligase SHPRH"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000330
Pfam:PF00176 GO:GO:0005524 GO:GO:0003677 EMBL:AL356599
EMBL:AL451145 HGNC:HGNC:19336 Ensembl:ENST00000433355 Bgee:H7C2W2
Uniprot:H7C2W2
Length = 449
Score = 147 (56.8 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 37/101 (36%), Positives = 52/101 (51%)
Query: 14 RPYQRRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYSTLFYNPFSGSLSLSP 73
RPYQR A WM+Q+E + + + L L+YNP++G +
Sbjct: 283 RPYQREAVNWMLQQECFRSSPATESALHFLWREI-VTSEGLK----LYYNPYTGCIIREY 337
Query: 74 DYTSSYVFGGILADEMGLGKTVELLACIFAH-RKPASDDSI 113
+ + GGILADEMGLGKTVE+LA I H R+ D++
Sbjct: 338 PNSGPQLLGGILADEMGLGKTVEVLALILTHTRQDVKQDAL 378
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 136 (52.9 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 37/137 (27%), Positives = 68/137 (49%)
Query: 319 RIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 378
R+ W + LDEAQ ++S+++ ++ L+ ++R +TGTPIQ + +L+ LL F+ +
Sbjct: 645 RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 704
Query: 379 FS----ISRWWIEVIRDPYENG---DVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEE 431
F + W+ + I EN D + H K M R K V +EL + E
Sbjct: 705 FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENELS--DKIE 762
Query: 432 CVSWLTFSPIEEHFYQS 448
+++ + ++ YQ+
Sbjct: 763 ILTYCQLTSRQKLLYQA 779
Score = 75 (31.5 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 83 GILADEMGLGKTVELLACIFAH 104
GILADEMGLGKTV+ +A + AH
Sbjct: 541 GILADEMGLGKTVQSIA-LLAH 561
Score = 53 (23.7 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 20/75 (26%), Positives = 30/75 (40%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGAD---- 277
G LI+ PA L W E TR P K Y G + L D
Sbjct: 570 GPFLIISPASTLNNWHQEFTRFV-P-KFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFH 627
Query: 278 IVLTTYDVLKEDLSH 292
+V+T+Y ++ +D+ +
Sbjct: 628 VVITSYQLVVQDVKY 642
Score = 37 (18.1 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 996 DDNDTSVDALSPDELASASVTN 1017
DD+ SVD+ P + S+++
Sbjct: 1346 DDSFISVDSAMPSPFSEISISS 1367
>MGI|MGI:2444036 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
Pfam:PF00176 MGI:MGI:2444036 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:AC136146 EMBL:AC122417 IPI:IPI00988884
ProteinModelPortal:E9Q9V7 SMR:E9Q9V7 Ensembl:ENSMUST00000066582
OMA:VIQDHQA Bgee:E9Q9V7 Uniprot:E9Q9V7
Length = 936
Score = 120 (47.3 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 36/119 (30%), Positives = 57/119 (47%)
Query: 323 WR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
WR + LDEAQ +++ + + L ++ R +TGTP+Q L +L+ L+ FL F
Sbjct: 732 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 791
Query: 382 SRWWIEVIRDPYENGDVGAMEFT-------HKFFKEIMCRSSKVHVSDELQLPPQEECV 433
R + E +P G+ E+ HK + + R KV V E Q+P + E V
Sbjct: 792 HREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLRRVKVDV--EKQMPKKYEHV 848
Score = 72 (30.4 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 83 GILADEMGLGKTVELLACIFAH 104
GILADEMGLGKT++ ++ + AH
Sbjct: 631 GILADEMGLGKTIQTIS-LLAH 651
Score = 54 (24.1 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGAR 258
G LI+ P ++ W+ E+ R P S K Y GA+
Sbjct: 660 GPHLIIVPTSVMLNWEMELKRWC-P-SFKILTYYGAQ 694
Score = 46 (21.3 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 495 LLNSLLKLRQACCHPQV 511
++N L++LR+ C HP +
Sbjct: 882 VINILMQLRKVCNHPNL 898
>UNIPROTKB|G3N326 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 Pfam:PF00176
GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 EMBL:DAAA02057908
Ensembl:ENSBTAT00000063921 Uniprot:G3N326
Length = 934
Score = 123 (48.4 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 57/207 (27%), Positives = 84/207 (40%)
Query: 323 WR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
WR + LDEAQ +++ + + L ++ R +TGTP+Q L +L+ L+ FL F
Sbjct: 730 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 789
Query: 382 SRWWIEVIRDPYENGDVGAMEFT-------HKFFKEIMCRSSKVHVSDELQLPPQEECVS 434
R + E +P G+ E+ HK + + R KV V E Q+P + E V
Sbjct: 790 HREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLRRVKVDV--EKQMPKKYEHVI 847
Query: 435 WLTFSPIEEHFYQ------SQHET-CVGYAREVIQRLKDNILKRNVPGHASSDALYNPII 487
S + Y + ET G+ VI L N P + +P I
Sbjct: 848 RCRLSKRQRCLYDDFMAQTTTKETLATGHFMSVINILMQLRKVCNHPNLFDPRPVTSPFI 907
Query: 488 THAEAAKLLNSLLKLRQACCHP-QVGS 513
T + L LR HP QV S
Sbjct: 908 TPGICFSTAS--LVLRATDVHPLQVSS 932
Score = 72 (30.4 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 83 GILADEMGLGKTVELLACIFAH 104
GILADEMGLGKT++ ++ + AH
Sbjct: 629 GILADEMGLGKTIQTIS-LLAH 649
Score = 54 (24.1 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGAR 258
G LI+ P ++ W+ E+ R P S K Y GA+
Sbjct: 658 GPHLIIVPTSVMLNWEMELKRWC-P-SFKILTYYGAQ 692
>SGD|S000003118 [details] [associations]
symbol:INO80 "ATPase and nucleosome spacing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042766 "nucleosome mobilization" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IMP] [GO:0016584
"nucleosome positioning" evidence=IDA] [GO:0031011 "Ino80 complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 SGD:S000003118
GO:GO:0005524 EMBL:BK006941 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0016887 GO:GO:0006366 GO:GO:0031011
GO:GO:0006348 GO:GO:0004386 GO:GO:0043486 GO:GO:0042766 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:X99960 GO:GO:0016584 GO:GO:0043618 KO:K11665
GeneTree:ENSGT00680000100052 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
EMBL:Z72672 PIR:S60416 RefSeq:NP_011365.1 ProteinModelPortal:P53115
SMR:P53115 DIP:DIP-1386N IntAct:P53115 MINT:MINT-388693
STRING:P53115 PaxDb:P53115 PeptideAtlas:P53115 EnsemblFungi:YGL150C
GeneID:852728 KEGG:sce:YGL150C CYGD:YGL150c OMA:DEFSDWF
NextBio:972117 Genevestigator:P53115 GermOnline:YGL150C
Uniprot:P53115
Length = 1489
Score = 140 (54.3 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 56/238 (23%), Positives = 103/238 (43%)
Query: 285 VLKEDLSHDSDRHEGDRRFMRFQKRYPVIPT---LLTRIFWWRICLDEAQMVESNAAAAT 341
VL++ + R+ + F Y ++ T L ++ W + LDEAQ ++S+ ++
Sbjct: 795 VLRKFWDRKNLRYNKNAPFHVMVTSYQMVVTDANYLQKMKWQYMILDEAQAIKSSQSSRW 854
Query: 342 EMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS----ISRWWIEVIRDPYE-NG 396
+ L + ++R +TGTPIQ + +L+ LL F+ S F + W+ + I E N
Sbjct: 855 KNLLSFHCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHDEFNEWFSKDIESHAEANT 914
Query: 397 DVGAMEFT--HKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQS-QHETC 453
+ + H K M R K +V EL + + + LT + YQ + +
Sbjct: 915 KLNQQQLRRLHMILKPFMLRRVKKNVQSELGDKIEIDVLCDLTQR--QAKLYQVLKSQIS 972
Query: 454 VGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQV 511
Y + I+ N N ++ SD L+N++++ R+ C HP +
Sbjct: 973 TNY--DAIENAATNDSTSNSASNSGSDQ------------NLINAVMQFRKVCNHPDL 1016
Score = 73 (30.8 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 15/22 (68%), Positives = 19/22 (86%)
Query: 83 GILADEMGLGKTVELLACIFAH 104
GILADEMGLGKTV+ ++ + AH
Sbjct: 727 GILADEMGLGKTVQSIS-VLAH 747
Score = 42 (19.8 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 222 GATLIVCPAPILAQWDAEITR 242
G L+V PA L W EI++
Sbjct: 756 GPFLVVTPASTLHNWVNEISK 776
>TAIR|locus:2196115 [details] [associations]
symbol:AT1G02670 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006281 "DNA repair"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K15083 IPI:IPI00540835
RefSeq:NP_171767.1 UniGene:At.51462 ProteinModelPortal:F4HXL1
SMR:F4HXL1 PRIDE:F4HXL1 EnsemblPlants:AT1G02670.1 GeneID:839532
KEGG:ath:AT1G02670 OMA:THITFAR Uniprot:F4HXL1
Length = 678
Score = 117 (46.2 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 31/105 (29%), Positives = 54/105 (51%)
Query: 269 DISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLD 328
++ +L+ D VLTT +++ + D EG M P L I W RI +D
Sbjct: 230 NVQKLMNYDFVLTTSPIVENEYRKD----EGVDETMS--------P--LHSIKWNRIIVD 275
Query: 329 EAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRF 373
EA +++ ++ + L A +RW ++GTP+Q +D+LY L+ +
Sbjct: 276 EAHDIKNRSSRTAKAVFALEATYRWALSGTPLQNDVDELYSLVSY 320
Score = 103 (41.3 bits), Expect = 4.1e-05, Sum P(3) = 4.1e-05
Identities = 25/82 (30%), Positives = 41/82 (50%)
Query: 212 IEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDIS 271
++ S A G TL++ P L+QW EI+R T PGS + Y G + ++
Sbjct: 180 VDRAKSREAVGHTLVLVPPVALSQWLDEISRLTSPGSTRVLQYHGPKRDK-------NVQ 232
Query: 272 ELVGADIVLTTYDVLKEDLSHD 293
+L+ D VLTT +++ + D
Sbjct: 233 KLMNYDFVLTTSPIVENEYRKD 254
Score = 86 (35.3 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 78 SYVFGGILADEMGLGKTVELLACIFAHRK 106
S V GGILADEMG+GKT++ ++ + A R+
Sbjct: 151 SAVRGGILADEMGMGKTIQAISLVLARRE 179
Score = 41 (19.5 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 493 AKLLNSLLKLRQACCHPQVGS 513
A + L++LRQA HP + S
Sbjct: 421 AHIFGLLIRLRQAVDHPYLVS 441
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 138 (53.6 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 41/150 (27%), Positives = 71/150 (47%)
Query: 285 VLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLT---RIFWWRICLDEAQMVESNAAAAT 341
+L++ S R++ D F Y +I + ++ W + LDEAQ ++S++++
Sbjct: 761 ILRKFWDRKSLRYDKDSPFHVLVTSYQLIVADIAYFQKMKWQYMILDEAQAIKSSSSSRW 820
Query: 342 EMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS----ISRWWIEVIRDPYENG- 396
+ L L ++R +TGTPIQ + +L+ LL F+ S F S W+ + I ++
Sbjct: 821 KSLLNLTCRNRLLLTGTPIQNSMQELWALLHFIMPSIFDSHDEFSDWFAKDIESHAQSNT 880
Query: 397 --DVGAMEFTHKFFKEIMCRSSKVHVSDEL 424
D + H K M R K +V EL
Sbjct: 881 SLDEQQLRRLHMILKPFMLRRIKKNVQSEL 910
Score = 68 (29.0 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKTV+ ++ +
Sbjct: 693 GILADEMGLGKTVQSISVL 711
>RGD|1306794 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1306794 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006338 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GeneTree:ENSGT00560000076896 OrthoDB:EOG4PG601
IPI:IPI00767719 Ensembl:ENSRNOT00000019358 UCSC:RGD:1306794
Uniprot:D4AAG9
Length = 904
Score = 121 (47.7 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 34/126 (26%), Positives = 59/126 (46%)
Query: 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
W I +DEA ++++ + + + + HR ITGTP+Q L +L+ LL F+ FS
Sbjct: 606 WAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFS- 664
Query: 382 SRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPI 441
W E + + G HK + + R K V E LP + E + + S +
Sbjct: 665 -SW--EDFEEEHGKGREYGYASLHKELEPFLLRRVKKDV--EKSLPAKVEQILRMEMSAL 719
Query: 442 EEHFYQ 447
++ +Y+
Sbjct: 720 QKQYYK 725
Score = 66 (28.3 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG---ARNSSLSDTSIMDISELVGADI 278
G L+V P L W EI T + +Y G +RN + + ++ + +I
Sbjct: 529 GPFLLVVPLSTLTSWQREI--QTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNI 586
Query: 279 VLTTYDVLKED 289
+LTTY++L +D
Sbjct: 587 LLTTYEILLKD 597
Score = 61 (26.5 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ ++
Sbjct: 501 ILADEMGLGKTIQTIS 516
Score = 38 (18.4 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 185 KKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPV 219
K+ +R++ N+ ++ E + D+L+E V
Sbjct: 227 KRSSRRQATVNVSYKEDEEMKTDSDDLLEVCGEDV 261
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 134 (52.2 bits), Expect = 1.9e-06, Sum P(4) = 1.9e-06
Identities = 34/113 (30%), Positives = 57/113 (50%)
Query: 319 RIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 378
R+ W + LDEAQ ++S+++ ++ L+ ++R +TGTPIQ + +L+ LL F+ +
Sbjct: 643 RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 702
Query: 379 FS----ISRWWIEVIRDPYENG---DVGAMEFTHKFFKEIMCRSSKVHVSDEL 424
F + W+ + I EN D + H K M R K V +EL
Sbjct: 703 FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENEL 755
Score = 75 (31.5 bits), Expect = 1.9e-06, Sum P(4) = 1.9e-06
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 83 GILADEMGLGKTVELLACIFAH 104
GILADEMGLGKTV+ +A + AH
Sbjct: 539 GILADEMGLGKTVQSIA-LLAH 559
Score = 53 (23.7 bits), Expect = 1.9e-06, Sum P(4) = 1.9e-06
Identities = 20/75 (26%), Positives = 30/75 (40%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGAD---- 277
G LI+ PA L W E TR P K Y G + L D
Sbjct: 568 GPFLIISPASTLNNWHQEFTRFV-P-KFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFH 625
Query: 278 IVLTTYDVLKEDLSH 292
+V+T+Y ++ +D+ +
Sbjct: 626 VVITSYQLVVQDVKY 640
Score = 37 (18.1 bits), Expect = 1.9e-06, Sum P(4) = 1.9e-06
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 996 DDNDTSVDALSPDELASASVTN 1017
DD+ SVD+ P + S+++
Sbjct: 1343 DDSFISVDSAMPSPFSEISISS 1364
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 134 (52.2 bits), Expect = 1.9e-06, Sum P(4) = 1.9e-06
Identities = 34/113 (30%), Positives = 57/113 (50%)
Query: 319 RIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 378
R+ W + LDEAQ ++S+++ ++ L+ ++R +TGTPIQ + +L+ LL F+ +
Sbjct: 646 RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 705
Query: 379 FS----ISRWWIEVIRDPYENG---DVGAMEFTHKFFKEIMCRSSKVHVSDEL 424
F + W+ + I EN D + H K M R K V +EL
Sbjct: 706 FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENEL 758
Score = 75 (31.5 bits), Expect = 1.9e-06, Sum P(4) = 1.9e-06
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 83 GILADEMGLGKTVELLACIFAH 104
GILADEMGLGKTV+ +A + AH
Sbjct: 542 GILADEMGLGKTVQSIA-LLAH 562
Score = 53 (23.7 bits), Expect = 1.9e-06, Sum P(4) = 1.9e-06
Identities = 20/75 (26%), Positives = 30/75 (40%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGAD---- 277
G LI+ PA L W E TR P K Y G + L D
Sbjct: 571 GPFLIISPASTLNNWHQEFTRFV-P-KFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFH 628
Query: 278 IVLTTYDVLKEDLSH 292
+V+T+Y ++ +D+ +
Sbjct: 629 VVITSYQLVVQDVKY 643
Score = 37 (18.1 bits), Expect = 1.9e-06, Sum P(4) = 1.9e-06
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 996 DDNDTSVDALSPDELASASVTN 1017
DD+ SVD+ P + S+++
Sbjct: 1347 DDSFISVDSAMPSPFSEISISS 1368
>UNIPROTKB|E1BAN8 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:DAAA02028556 EMBL:DAAA02028557 IPI:IPI00685860
RefSeq:NP_001192313.1 UniGene:Bt.55708 Ensembl:ENSBTAT00000013708
GeneID:505992 KEGG:bta:505992 NextBio:20867400 Uniprot:E1BAN8
Length = 1566
Score = 134 (52.2 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 34/113 (30%), Positives = 57/113 (50%)
Query: 319 RIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 378
R+ W + LDEAQ ++S+++ ++ L+ ++R +TGTPIQ + +L+ LL F+ +
Sbjct: 652 RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 711
Query: 379 FS----ISRWWIEVIRDPYENG---DVGAMEFTHKFFKEIMCRSSKVHVSDEL 424
F + W+ + I EN D + H K M R K V +EL
Sbjct: 712 FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENEL 764
Score = 75 (31.5 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 83 GILADEMGLGKTVELLACIFAH 104
GILADEMGLGKTV+ +A + AH
Sbjct: 548 GILADEMGLGKTVQSIA-LLAH 568
Score = 53 (23.7 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 20/75 (26%), Positives = 30/75 (40%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGAD---- 277
G LI+ PA L W E TR P K Y G + L D
Sbjct: 577 GPFLIISPASTLNNWHQEFTRFV-P-KFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFH 634
Query: 278 IVLTTYDVLKEDLSH 292
+V+T+Y ++ +D+ +
Sbjct: 635 VVITSYQLVVQDVKY 649
Score = 37 (18.1 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 996 DDNDTSVDALSPDELASASVTN 1017
DD+ SVD+ P + S+++
Sbjct: 1353 DDSFISVDSAMPSPFSEISISS 1374
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 134 (52.2 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 34/113 (30%), Positives = 57/113 (50%)
Query: 319 RIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 378
R+ W + LDEAQ ++S+++ ++ L+ ++R +TGTPIQ + +L+ LL F+ +
Sbjct: 652 RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 711
Query: 379 FS----ISRWWIEVIRDPYENG---DVGAMEFTHKFFKEIMCRSSKVHVSDEL 424
F + W+ + I EN D + H K M R K V +EL
Sbjct: 712 FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENEL 764
Score = 75 (31.5 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 83 GILADEMGLGKTVELLACIFAH 104
GILADEMGLGKTV+ +A + AH
Sbjct: 548 GILADEMGLGKTVQSIA-LLAH 568
Score = 53 (23.7 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 20/75 (26%), Positives = 30/75 (40%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGAD---- 277
G LI+ PA L W E TR P K Y G + L D
Sbjct: 577 GPFLIISPASTLNNWHQEFTRFV-P-KFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFH 634
Query: 278 IVLTTYDVLKEDLSH 292
+V+T+Y ++ +D+ +
Sbjct: 635 VVITSYQLVVQDVKY 649
Score = 37 (18.1 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 996 DDNDTSVDALSPDELASASVTN 1017
DD+ SVD+ P + S+++
Sbjct: 1353 DDSFISVDSAMPSPFSEISISS 1374
>DICTYBASE|DDB_G0293012 [details] [associations]
symbol:DDB_G0293012 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000626
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00213 SMART:SM00298
SMART:SM00490 dictyBase:DDB_G0293012 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0004003
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
EMBL:AAFI02000199 InterPro:IPR022617 Pfam:PF11976
RefSeq:XP_629261.1 ProteinModelPortal:Q54CF8
EnsemblProtists:DDB0220643 GeneID:8628981 KEGG:ddi:DDB_G0293012
InParanoid:Q54CF8 OMA:IMINEDI Uniprot:Q54CF8
Length = 3071
Score = 134 (52.2 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 55/239 (23%), Positives = 107/239 (44%)
Query: 319 RIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 378
R+ W + LDE ++++ + + +H +TGTP+Q + +L+ +L FL
Sbjct: 1019 RVPWRALILDEGHRIKNDKSKVLSKLKSIKTEHSIILTGTPLQNDMKELWTMLNFLDPDK 1078
Query: 379 FSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTF 438
F+ + +++ D E V + H+ + R K V EL +P +EE V +
Sbjct: 1079 FNSCQEFLDEYSDLKEESQVSKL---HQLLSPYLLRRMKEDV--ELSIPIKEETVIQVEL 1133
Query: 439 SPIEEHFYQSQHETCVGYAREVIQR-LKDNILKRNVPGHASSDALYNPIITHAEAAK-LL 496
S ++ +Y++ E RE + R +K K N+P ++ + H
Sbjct: 1134 SSTQKTYYRAILER----NREFLSRGIKQ---KTNLPKLSNIMIQIRKVCNHPFLIPGAE 1186
Query: 497 NSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEAL--RKLVMALN 553
S++K + ++G ++S + L +D++L L K EG + L ++V +LN
Sbjct: 1187 ESIVKQEKIAGDEELGELLVKSSSKLVL-VDKLLQRL----KAEGHQVLIFSQMVESLN 1240
Score = 68 (29.0 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSS--LSDTSIMDISELVGADIV 279
G L+V P L W EI + T+ +KT ++ G++ + +S + +++
Sbjct: 948 GPFLVVAPLSTLGNWHKEILKWTK---MKTLVFYGSQETRGFISKYEFKHKDTYL-FEVL 1003
Query: 280 LTTYDVLKEDLS 291
LTTY+ + D S
Sbjct: 1004 LTTYETIMSDHS 1015
Score = 62 (26.9 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 67 GSLSLSPDYTSSYVFGGILADEMGLGKTVELLA 99
G L LS Y + +LADEMGLGKT++ +A
Sbjct: 905 GFLWLS--YCWYHCRSSLLADEMGLGKTIQSIA 935
Score = 47 (21.6 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 18/100 (18%), Positives = 41/100 (41%)
Query: 638 DENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDRKXXXXXXXXXXXXXXLITVC 697
D+N S + N+D D++ + + + S N ++ + V
Sbjct: 2265 DQNNNNNNNNSNQNNTDNIDSDSGNNNNQNSSTNQ-QQQQQQSEKIPSSESLRRRIQKVT 2323
Query: 698 ENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQY 737
+ + +K S +K +AQQ+ + +Q + +EK++
Sbjct: 2324 DQILKKEHSDMIMKQHMAQQKLHQLQLQQ-QMKEQKEKEF 2362
Score = 44 (20.5 bits), Expect = 3.9e-06, Sum P(4) = 3.9e-06
Identities = 23/114 (20%), Positives = 48/114 (42%)
Query: 793 QSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESF 852
Q L QL+ ++ + E Q +P +++ ++ + +G + ++ F
Sbjct: 2342 QQKLHQLQLQQQMKEQKEKEFQQQQNQPNQQNQPGQQNQQTQHGHSGSHKQKYS--NDYF 2399
Query: 853 QDYEARLFRLKKSQGDIASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGN 906
D+ +R S GDI+ E +D K+ + + S N N+ ++S N
Sbjct: 2400 DDFVSRS---DFSGGDISDVE--IDDYIKSKKMKHSH-NSSNNNSNNNNNSNSN 2447
Score = 43 (20.2 bits), Expect = 4.8e-06, Sum P(4) = 4.8e-06
Identities = 19/127 (14%), Positives = 54/127 (42%)
Query: 893 SQPNKNSTSSSVGNEEIKRRDVRETV--VVSKSPSELEVILGVIKNYCKTQLGREAISAS 950
+Q + S + + E RR +++ ++ K S++ ++K + + ++ +
Sbjct: 2298 NQQQQQQQSEKIPSSESLRRRIQKVTDQILKKEHSDM-----IMKQH----MAQQKLHQL 2348
Query: 951 SKQLHILEAMRKEYANARSLATAQAQFLRAHDEIRMATTRLHLKEDDNDTSVDALSPDEL 1010
Q + E KE+ ++ Q Q + + + + + H ++ ND D +S +
Sbjct: 2349 QLQQQMKEQKEKEFQQQQNQPNQQNQPGQQNQQTQHGHSGSHKQKYSNDYFDDFVSRSDF 2408
Query: 1011 ASASVTN 1017
+ +++
Sbjct: 2409 SGGDISD 2415
Score = 40 (19.1 bits), Expect = 9.4e-06, Sum P(4) = 9.4e-06
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 890 WYLSQPNKNSTSSSVGNEEIKRRDVRETVVVSKSPSELEVILGVIKNYC-KTQLGREAIS 948
W + +P N + + EE +E SKS S E K+ C K + G + IS
Sbjct: 1863 WNIEEPKSNDKETQIKVEE------KEKSTESKSSSNDE------KDVCEKVEKGEKEIS 1910
Query: 949 A 949
+
Sbjct: 1911 S 1911
Score = 37 (18.1 bits), Expect = 1.8e-05, Sum P(4) = 1.8e-05
Identities = 13/64 (20%), Positives = 25/64 (39%)
Query: 863 KKSQGDIASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDVRETVVVSK 922
+KSQ D S ++ + S L + + S S + E + +++E K
Sbjct: 1967 EKSQDDEKSKDDEKSKDDEKSKLEENQDESTPMEVDKESKSTSSSEKQSIEIKEEKESEK 2026
Query: 923 SPSE 926
P +
Sbjct: 2027 KPQD 2030
>FB|FBgn0086902 [details] [associations]
symbol:kis "kismet" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0007379 "segment
specification" evidence=IMP] [GO:0007350 "blastoderm segmentation"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0019730 "antimicrobial humoral
response" evidence=IMP] [GO:0007298 "border follicle cell
migration" evidence=IMP] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0016322 "neuron remodeling" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0007614 "short-term memory"
evidence=IMP] [GO:0046622 "positive regulation of organ growth"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0007476 "imaginal disc-derived
wing morphogenesis" evidence=IMP] [GO:0007031 "peroxisome
organization" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0007411 GO:GO:0045892 GO:GO:0005875
EMBL:AE014134 GO:GO:0003677 GO:GO:0006200 GO:GO:0016322
GO:GO:0007031 GO:GO:0016887 GO:GO:0007298 GO:GO:0007614
GO:GO:0004386 GO:GO:0007379 GO:GO:0046622 GO:GO:0007476
GO:GO:0019730 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007350 InterPro:IPR023780
KO:K14437 GeneTree:ENSGT00560000077077 RefSeq:NP_001137761.1
UniGene:Dm.3182 ProteinModelPortal:B7Z002 SMR:B7Z002 STRING:B7Z002
EnsemblMetazoa:FBtr0299837 GeneID:33185 KEGG:dme:Dmel_CG3696
CTD:33185 FlyBase:FBgn0086902 OMA:TTFEMIV OrthoDB:EOG4BZKHC
PhylomeDB:B7Z002 GenomeRNAi:33185 NextBio:782323 Bgee:B7Z002
Uniprot:B7Z002
Length = 5517
Score = 138 (53.6 bits), Expect = 2.0e-06, Sum P(5) = 2.0e-06
Identities = 36/130 (27%), Positives = 65/130 (50%)
Query: 319 RIFWWRIC-LDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSS 377
+ F WR+C +DEA +++ E +L +HR ++GTP+Q + +L+ LL FL+ S
Sbjct: 2156 KAFNWRLCVIDEAHRLKNRNCKLLEGLRQLNLEHRVLLSGTPLQNNISELFSLLNFLEPS 2215
Query: 378 PFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLT 437
FS ++ +V ++ K +M R K V E L P+EE + +
Sbjct: 2216 QFSSQEEFMSEFGSLRTEEEVNKLQ---ALLKPMMLRRLKDDV--EKSLAPKEETIIEVE 2270
Query: 438 FSPIEEHFYQ 447
+ I++ +Y+
Sbjct: 2271 LTNIQKKYYR 2280
Score = 64 (27.6 bits), Expect = 2.0e-06, Sum P(5) = 2.0e-06
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 84 ILADEMGLGKTVELLACIFAH 104
ILADEMGLGKT++ L F H
Sbjct: 2051 ILADEMGLGKTIQSLT--FVH 2069
Score = 58 (25.5 bits), Expect = 2.0e-06, Sum P(5) = 2.0e-06
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 488 THAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQ 520
T A L+N++++LR+ C HP + + +Q
Sbjct: 2295 TSANIPNLMNTMMELRKCCIHPYLLNGAEEQIQ 2327
Score = 57 (25.1 bits), Expect = 2.0e-06, Sum P(5) = 2.0e-06
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 891 YLSQPNKNSTSSSVGNEEIKRRDVRETVVVSKSPSELEVILGVIKNYCKTQLGREAISAS 950
++S P +S SS+ + K + + + KS L V CK Q G + +S S
Sbjct: 3459 HVSTPMASSNGSSLSPDWTKFKQMAH--LERKSDETLTDYYKVFVAMCKRQAGLK-LSES 3515
Query: 951 SKQLH-ILEAMRKEYA 965
+ L I+E + KE+A
Sbjct: 3516 ERGLEGIIEEIEKEHA 3531
Score = 51 (23.0 bits), Expect = 2.0e-06, Sum P(5) = 2.0e-06
Identities = 23/90 (25%), Positives = 34/90 (37%)
Query: 651 ENSD-FTDAEDPSGHLSDLSENGFNGDRKXXXXXXXXXXXXXXLITVCENLKQKYLSGFS 709
+N D D E PS SEN G+ K + E L K G
Sbjct: 3013 DNKDSLLDPERPSSSGKSSSENASGGNDKTESENDATTVSESSYKS--EVLPGK---GSD 3067
Query: 710 VKLSVAQQEFRKSYMQVCNALDDREKQYSA 739
+ +SVAQQ+ + ++ N D + + A
Sbjct: 3068 LDVSVAQQDALSATPELANTSDPKMNKNDA 3097
Score = 48 (22.0 bits), Expect = 1.4e-05, Sum P(5) = 1.4e-05
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 862 LKKSQGDIASAEEAVDLQKKNSSLNRFYWYLSQP---NKNSTSSSVGNEEIKRRDVRET 917
L S A+A A ++ S NR L +P N+ + S G KRR++R T
Sbjct: 5436 LSGSSSSSAAAAAAAAAEENRRSSNR----LKRPRSGNEQGSGSVEGQPPEKRRELRST 5490
Score = 45 (20.9 bits), Expect = 2.8e-05, Sum P(5) = 2.8e-05
Identities = 22/102 (21%), Positives = 44/102 (43%)
Query: 945 EAISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDEIRMATTRLHLKEDDNDTSV-D 1003
E ++A+ K +A E A A A+ + + + DE+ T +K++ T + +
Sbjct: 3633 EKLAAAEKDAATEKAAATEKAAAEKAASVKNEVIDLDDELM--TNESVIKKESPVTPIKE 3690
Query: 1004 ALSPDELASASVT--NSSEKFISMTLLSQVKGKLRYLKVSTE 1043
+ +E T N +K +++KGK + +TE
Sbjct: 3691 EIKSEESPEKHDTADNLEDKNSDAEESTKIKGKEDFNPETTE 3732
Score = 44 (20.5 bits), Expect = 6.5e-05, Sum P(5) = 6.5e-05
Identities = 37/163 (22%), Positives = 65/163 (39%)
Query: 617 NEQHFP-GCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAE-DPSGHLSDLSENGFN 674
N+ +F G SEK F I +E + K + + E+ AE D + + +E
Sbjct: 3597 NDPNFSFGESEKRF-IRELEAQIQRTIKLEAFNAEKAEKLAAAEKDAATEKAAATEKA-- 3653
Query: 675 GDRKXXXXXXXXXXXXXXLITVCENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDRE 734
K L+T E++ +K +K + +E + + N L+D+
Sbjct: 3654 AAEKAASVKNEVIDLDDELMTN-ESVIKKESPVTPIKEEIKSEESPEKHDTADN-LEDKN 3711
Query: 735 KQYSAWWLEALHHAEGNKDFSAELIRKIEEAI--SGSLNKSRA 775
E +G +DF+ E K EA+ S +LNK ++
Sbjct: 3712 SD-----AEESTKIKGKEDFNPETTEK--EALDESTNLNKDKS 3747
Score = 43 (20.2 bits), Expect = 4.3e-05, Sum P(5) = 4.3e-05
Identities = 14/68 (20%), Positives = 30/68 (44%)
Query: 864 KSQGDIASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDVRETVVVSKS 923
+S+ ASA A L +S+ ++ P+ +++ S G + R +T +
Sbjct: 4938 QSRNTTASANSAASLMNAMASMGGGASTVTTPSTSASGSGRGRQSSSRNQ-SQTTPTAAD 4996
Query: 924 PSELEVIL 931
++L +L
Sbjct: 4997 MAQLSSLL 5004
Score = 43 (20.2 bits), Expect = 0.00015, Sum P(5) = 0.00015
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 893 SQPNKNSTSSSVGNEEIKRRDVRETVVVSKSPSELEVILGVIKNYCKTQLGREAISAS 950
S K+S+ ++ G + K + VS+S + EV+ G + + ++A+SA+
Sbjct: 3025 SSSGKSSSENASGGND-KTESENDATTVSESSYKSEVLPGKGSDLDVSVAQQDALSAT 3081
Score = 37 (18.1 bits), Expect = 0.00039, Sum P(4) = 0.00039
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 986 MATTRLHLKEDDNDTSVDALSPDELASASVTNSSE 1020
+A T L + EDD ++ D DE+ T + +
Sbjct: 2971 LAVTSLPINEDDANSKHD--DGDEVDDDGTTTTKD 3003
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 130 (50.8 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 35/127 (27%), Positives = 60/127 (47%)
Query: 321 FWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
F WR + +DEA +++ + +E+ +R +TGTP+Q L +L+ LL FL F
Sbjct: 285 FNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVF 344
Query: 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ S + GD +E H + + R K V E LPP++E ++ S
Sbjct: 345 NSSEDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADV--EKSLPPKKEVKIYVGLS 402
Query: 440 PIEEHFY 446
++ +Y
Sbjct: 403 KMQREWY 409
Score = 66 (28.3 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ ++ +
Sbjct: 186 GILADEMGLGKTLQTISLL 204
Score = 52 (23.4 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 494 KLLNSLLKLRQACCHP 509
+LLN L++LR+ C HP
Sbjct: 430 RLLNILMQLRKCCNHP 445
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 133 (51.9 bits), Expect = 2.2e-06, Sum P(4) = 2.2e-06
Identities = 34/127 (26%), Positives = 62/127 (48%)
Query: 319 RIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 378
++ W + LDEAQ ++S+ ++ + L + ++R +TGTPIQ + +L+ LL F+ +
Sbjct: 924 KVKWQYMILDEAQAIKSSQSSRWKSLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMPTL 983
Query: 379 FS----ISRWWIEVIRDPYENG---DVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEE 431
F S W+ + I ++ + + H K M R K HV EL +++
Sbjct: 984 FDSHDEFSEWFSKDIESHAQSNTKLNEDQLRRLHMILKPFMLRRVKKHVQQELGDKVEKD 1043
Query: 432 CVSWLTF 438
LT+
Sbjct: 1044 VFCDLTY 1050
Score = 66 (28.3 bits), Expect = 2.2e-06, Sum P(4) = 2.2e-06
Identities = 12/17 (70%), Positives = 16/17 (94%)
Query: 83 GILADEMGLGKTVELLA 99
GILADEMGLGKT++ ++
Sbjct: 819 GILADEMGLGKTIQSIS 835
Score = 52 (23.4 bits), Expect = 2.2e-06, Sum P(4) = 2.2e-06
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG 256
G L++ PA L W EIT+ P ++K Y G
Sbjct: 848 GPFLVIAPASTLHNWQQEITKFV-P-NIKVLPYWG 880
Score = 48 (22.0 bits), Expect = 2.2e-06, Sum P(4) = 2.2e-06
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 491 EAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSM 526
++ L+N +++ R+ C HP + R+ +SP S+
Sbjct: 1079 DSTTLMNLVMQFRKVCNHPDLFE---RAETKSPFSL 1111
>ZFIN|ZDB-GENE-070228-1 [details] [associations]
symbol:ercc6 "excision repair cross-complementing
rodent repair deficiency, complementation group 6" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-070228-1 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
EMBL:CR762493 IPI:IPI00933448 RefSeq:XP_688972.2
Ensembl:ENSDART00000112380 GeneID:560477 KEGG:dre:560477
NextBio:20883461 Bgee:F1RDN1 Uniprot:F1RDN1
Length = 1390
Score = 100 (40.3 bits), Expect = 2.3e-06, Sum P(5) = 2.3e-06
Identities = 31/149 (20%), Positives = 60/149 (40%)
Query: 312 VIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLL 371
++ + R W + LDE + + A T + HR+ ++G+P+Q L +L+ L
Sbjct: 607 IMQDYIQRYDWHYVILDEGHKIRNPNAGVTTACKQFRTPHRFILSGSPMQNNLKELWSLF 666
Query: 372 RF-----LKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKF-------FKEIMCRSSKVH 419
F L + P + ++ + + Y N ++ +K + R K
Sbjct: 667 DFVFPGKLGTLPVFMEQFSVPITMGGYANASPVQVQTAYKCACVLRDTINPYLLRRMKAD 726
Query: 420 VSDELQLPPQEECVSWLTFSPIEEHFYQS 448
V L LP + E V + + + YQ+
Sbjct: 727 VKANLSLPDKNEQVLFCRLTEDQRQVYQT 755
Score = 75 (31.5 bits), Expect = 2.3e-06, Sum P(5) = 2.3e-06
Identities = 13/18 (72%), Positives = 17/18 (94%)
Query: 82 GGILADEMGLGKTVELLA 99
GGIL DEMGLGKT++++A
Sbjct: 504 GGILGDEMGLGKTIQIIA 521
Score = 67 (28.6 bits), Expect = 2.3e-06, Sum P(5) = 2.3e-06
Identities = 21/79 (26%), Positives = 37/79 (46%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGAD-IVL 280
G T+IVCPA ++ QW E HT + + + + + I E+V + I++
Sbjct: 544 GPTVIVCPATVMHQWVKEF--HTWWPPFRVAVLHDTGSFTSKKEKL--IPEIVASHGILI 599
Query: 281 TTYDVLK--EDLSHDSDRH 297
T+Y ++ +D D H
Sbjct: 600 TSYSYIRIMQDYIQRYDWH 618
Score = 51 (23.0 bits), Expect = 2.3e-06, Sum P(5) = 2.3e-06
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSP 523
++ + L+ LR+ C HP + + G R L+ P
Sbjct: 771 QVFSGLIALRKICNHPDLFTGGPRLLRGIP 800
Score = 46 (21.3 bits), Expect = 2.3e-06, Sum P(5) = 2.3e-06
Identities = 11/49 (22%), Positives = 29/49 (59%)
Query: 906 NEEIKRRDVRETVVVSKSPSELEVILGVIKNYCKTQLGREAISASSKQL 954
++E + + ++V V+ +P+E + +L ++N+ Q + AS+K++
Sbjct: 1300 SQEDEEEESTQSVAVNAAPTEHDELLVDLRNFVAFQAQVDG-QASTKEI 1347
>MGI|MGI:88393 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=NAS]
[GO:0006338 "chromatin remodeling" evidence=IGI] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 MGI:MGI:88393 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 GO:GO:0006338 GO:GO:0006333
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 HOGENOM:HOG000207917
OMA:AETHENE OrthoDB:EOG4PG601 EMBL:L10410 EMBL:CH466630
EMBL:BC115822 IPI:IPI00107999 PIR:A47392 RefSeq:NP_031716.2
UniGene:Mm.8137 ProteinModelPortal:P40201 SMR:P40201 IntAct:P40201
STRING:P40201 PhosphoSite:P40201 PaxDb:P40201 PRIDE:P40201
Ensembl:ENSMUST00000024627 GeneID:12648 KEGG:mmu:12648
InParanoid:Q14BJ0 NextBio:281852 Bgee:P40201 CleanEx:MM_CHD1
Genevestigator:P40201 GermOnline:ENSMUSG00000023852 Uniprot:P40201
Length = 1711
Score = 121 (47.7 bits), Expect = 2.5e-06, Sum P(4) = 2.5e-06
Identities = 34/126 (26%), Positives = 59/126 (46%)
Query: 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
W I +DEA ++++ + + + + HR ITGTP+Q L +L+ LL F+ FS
Sbjct: 606 WAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFS- 664
Query: 382 SRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPI 441
W E + + G HK + + R K V E LP + E + + S +
Sbjct: 665 -SW--EDFEEEHGKGREYGYASLHKELEPFLLRRVKKDV--EKSLPAKVEQILRMEMSAL 719
Query: 442 EEHFYQ 447
++ +Y+
Sbjct: 720 QKQYYK 725
Score = 66 (28.3 bits), Expect = 2.5e-06, Sum P(4) = 2.5e-06
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG---ARNSSLSDTSIMDISELVGADI 278
G L+V P L W EI T + +Y G +RN + + ++ + +I
Sbjct: 529 GPFLLVVPLSTLTSWQREI--QTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNI 586
Query: 279 VLTTYDVLKED 289
+LTTY++L +D
Sbjct: 587 LLTTYEILLKD 597
Score = 61 (26.5 bits), Expect = 2.5e-06, Sum P(4) = 2.5e-06
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ ++
Sbjct: 501 ILADEMGLGKTIQTIS 516
Score = 52 (23.4 bits), Expect = 2.5e-06, Sum P(4) = 2.5e-06
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 603 ILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDENARKCQR-----VSREENSDFTD 657
+LP + NCA ++S N + + ++ E R +R + RE F+D
Sbjct: 1067 MLPRMRNCAKQISFNGSEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSD 1126
Query: 658 AE 659
AE
Sbjct: 1127 AE 1128
Score = 40 (19.1 bits), Expect = 3.6e-05, Sum P(4) = 3.6e-05
Identities = 33/143 (23%), Positives = 56/143 (39%)
Query: 797 DQLEASRKTLLDRLL-EIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQ-- 853
++L A K + L E + ++P+E D+D + + GP+ V EL F+
Sbjct: 961 EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLSVGDELLSQFKVA 1020
Query: 854 --------DYEARLFRLKKSQGDIASAEEA--VDLQKKNSSLNRFYWYLSQPNKNSTSSS 903
D E R K+ +I E+ ++ +++ L Y N S
Sbjct: 1021 NFSNMDEDDIELEPERNSKNWEEIIPEEQRRRLEEEERQKELEEIYMLPRMRNCAKQISF 1080
Query: 904 VGNEEIKRRDVRETVVVSKSPSE 926
G+E + R R + S S SE
Sbjct: 1081 NGSEGRRSRSRRYSGSDSDSISE 1103
Score = 38 (18.4 bits), Expect = 0.00040, Sum P(4) = 0.00040
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 185 KKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPV 219
K+ +R++ N+ ++ E + D+L+E V
Sbjct: 227 KRSSRRQATVNVSYKEDEEMKTDSDDLLEVCGEDV 261
>UNIPROTKB|F1NCD0 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 EMBL:AADN02013166
IPI:IPI00572933 Ensembl:ENSGALT00000006172 OMA:DYKEFVW
Uniprot:F1NCD0
Length = 560
Score = 96 (38.9 bits), Expect = 2.9e-06, Sum P(4) = 2.9e-06
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRF 373
W I LDEA ++ + T+ + AKHR +TGTP+Q L +++ L F
Sbjct: 206 WDYIILDEAHKIKCPSNKTTKCVYAIPAKHRLLLTGTPLQNNLQEMWSLFDF 257
Score = 76 (31.8 bits), Expect = 2.9e-06, Sum P(4) = 2.9e-06
Identities = 13/18 (72%), Positives = 18/18 (100%)
Query: 82 GGILADEMGLGKTVELLA 99
GGILAD+MGLGKT++++A
Sbjct: 101 GGILADDMGLGKTIQIIA 118
Score = 57 (25.1 bits), Expect = 2.9e-06, Sum P(4) = 2.9e-06
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 225 LIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYD 284
L++ P +++ W AE R T PG L+ + G + + ++ I G IV+T+Y
Sbjct: 133 LLIMPTTLVSSWLAEFARWT-PG-LRVKEFHGTSKTERT-RNLEKIQRKNG--IVITSYQ 187
Query: 285 VL 286
+L
Sbjct: 188 ML 189
Score = 50 (22.7 bits), Expect = 2.9e-06, Sum P(4) = 2.9e-06
Identities = 10/48 (20%), Positives = 25/48 (52%)
Query: 426 LPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNV 473
L + + V W+ +P++E Y++ C+ + +EV+ + + + V
Sbjct: 344 LTRKNDFVVWVYLAPVQEKIYRNF--LCLDHVKEVLTTTRSPLAELTV 389
>ZFIN|ZDB-GENE-040426-892 [details] [associations]
symbol:chd1l "chromodomain helicase DNA binding
protein 1-like" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR001357
ZFIN:ZDB-GENE-040426-892 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 GO:GO:0004386 SUPFAM:SSF52113 PROSITE:PS50172
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154 CTD:9557
HOGENOM:HOG000030789 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV
EMBL:BC050498 IPI:IPI00482841 RefSeq:NP_956607.1 UniGene:Dr.84280
ProteinModelPortal:Q7ZU90 PRIDE:Q7ZU90 GeneID:393283
KEGG:dre:393283 InParanoid:Q7ZU90 NextBio:20814340
ArrayExpress:Q7ZU90 Uniprot:Q7ZU90
Length = 1026
Score = 110 (43.8 bits), Expect = 3.1e-06, Sum P(5) = 3.1e-06
Identities = 33/131 (25%), Positives = 63/131 (48%)
Query: 322 W-WRICL-DEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
W W+I + DEA +++ + + R +TGTPIQ L ++Y LL F++ S F
Sbjct: 155 WKWKILVVDEAHRLKNQESLLHQTLKEFTVGFRVLLTGTPIQNNLQEVYSLLTFIQPSVF 214
Query: 380 SISRWWIEVIRDPYEN--GDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLT 437
+E + Y + + ++ H+ + + R K V+ EL P + E V +
Sbjct: 215 LPEA--VEDFVNAYADIQTEPALVDELHQVLQPFLLRRVKAEVAAEL--PKKTELVVFHG 270
Query: 438 FSPIEEHFYQS 448
S +++ +Y++
Sbjct: 271 LSALQKRYYKA 281
Score = 71 (30.1 bits), Expect = 3.1e-06, Sum P(5) = 3.1e-06
Identities = 23/85 (27%), Positives = 37/85 (43%)
Query: 205 CQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSD 264
CQ L A S G L++CP +L W E+ R P SL Y G + ++
Sbjct: 68 CQTISLLAYARGSLKMNGPFLVLCPLAVLENWRQELERFC-P-SLSVICYTGDKEKR-AE 124
Query: 265 TSIMDISELVGADIVLTTYDVLKED 289
++ ++LTTY++ +D
Sbjct: 125 LQ-QNLKSDPRFHVLLTTYEMCLKD 148
Score = 57 (25.1 bits), Expect = 3.1e-06, Sum P(5) = 3.1e-06
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 82 GGILADEMGLGKTVELLACI 101
G IL DEMGLGKT + ++ +
Sbjct: 55 GCILGDEMGLGKTCQTISLL 74
Score = 52 (23.4 bits), Expect = 3.1e-06, Sum P(5) = 3.1e-06
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKI 539
+LLN L++LR+ HP + ++ P M E L+ GK +
Sbjct: 299 RLLNVLMQLRKCVDHPYL----FDGVEPEPFEMGEHLVEASGKLSL 340
Score = 40 (19.1 bits), Expect = 3.1e-06, Sum P(5) = 3.1e-06
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 912 RDVRETVVVSKSPSELEVILGVIKNYCKTQLGREAISASSKQL 954
RD E ++ S++ S+L + VI+ + L + +AS QL
Sbjct: 461 RDTIEEIIYSRAVSKLRLTDTVIEEGRFSLLDQAQSAASGLQL 503
Score = 39 (18.8 bits), Expect = 3.9e-06, Sum P(5) = 3.9e-06
Identities = 24/100 (24%), Positives = 42/100 (42%)
Query: 847 ELDESFQDYEARLFRLKKSQGDIASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGN 906
EL+E Q +A + K Q + +E ++ +KK + W+ S ++ V +
Sbjct: 632 ELEERRQKRQAAAAKRAKLQEERKKQQEELNYKKKMA------WWDSCGYRSLCLPRVDS 685
Query: 907 E-EIKRRDVRETVVVSKSPSELEVILGVIKNYCKTQLGRE 945
E E D + V S + S+ I V+ + Q RE
Sbjct: 686 EGEDMEPDEDDHVSFSSTDSDHTAIRYVLGDVTHPQADRE 725
>TAIR|locus:2116747 [details] [associations]
symbol:PKR2 "PICKLE RELATED 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00523018 RefSeq:NP_194918.2 UniGene:At.54572
ProteinModelPortal:F4JTF6 SMR:F4JTF6 PRIDE:F4JTF6
EnsemblPlants:AT4G31900.1 GeneID:829320 KEGG:ath:AT4G31900
OMA:SYWESES ArrayExpress:F4JTF6 Uniprot:F4JTF6
Length = 1202
Score = 110 (43.8 bits), Expect = 3.1e-06, Sum P(4) = 3.1e-06
Identities = 39/178 (21%), Positives = 84/178 (47%)
Query: 277 DIVLTTYDVLKEDL--SHDSDRHEGDR-RFMRFQKRYPVI-P--TLLTRIFWWRICLDEA 330
++V+ T D D+ H+ EG + +F Y ++ P ++L+ I W + +DE
Sbjct: 299 NVVMYTGDSEARDVIWEHEFYFSEGRKSKFDVLLTTYEMVHPGISVLSPIKWTCMIIDEG 358
Query: 331 QMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIR 390
+++ + + +KH +TGTP+Q L++L+ L+ FL + F +E +
Sbjct: 359 HRLKNQKSKLYSSLSQFTSKHIVLLTGTPLQNNLNELFALMHFLDADKFGS----LEKFQ 414
Query: 391 DPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQS 448
D + + + H+ + R K V + ++PP++E + + S ++ Y++
Sbjct: 415 DINKEEQISRL---HQMLAPHLLRRLKKDVLKD-KVPPKKELILRVDMSSQQKEVYKA 468
Score = 67 (28.6 bits), Expect = 3.1e-06, Sum P(4) = 3.1e-06
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 486 IITHAEAAKLLNSLLKLRQACCHP 509
++T AK+ N L+KLRQ C HP
Sbjct: 476 VLTKKRDAKISNVLMKLRQVCSHP 499
Score = 63 (27.2 bits), Expect = 3.1e-06, Sum P(4) = 3.1e-06
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ +A
Sbjct: 247 ILADEMGLGKTIQSIA 262
Score = 53 (23.7 bits), Expect = 3.1e-06, Sum P(4) = 3.1e-06
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 977 FLRAHDEI-RMATTRL-HLKED--DNDTSVDALSP----DELASASVTNSSEKFISMTLL 1028
+++ +DEI + L H+ E+ DN T+ ++ D + ++ S E +SMT +
Sbjct: 919 YMKTYDEINKYGILFLKHIAENPTDNSTNFKVITAMVYADGVPKEGIS-SDELLVSMTFM 977
Query: 1029 SQVKGKLRYL 1038
VK K ++L
Sbjct: 978 MLVKEKCQFL 987
>UNIPROTKB|F1MGF2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:DAAA02021391
EMBL:DAAA02021392 IPI:IPI00717393 UniGene:Bt.105262
Ensembl:ENSBTAT00000034967 NextBio:20866990 Uniprot:F1MGF2
Length = 1810
Score = 121 (47.7 bits), Expect = 3.2e-06, Sum P(4) = 3.2e-06
Identities = 34/126 (26%), Positives = 59/126 (46%)
Query: 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
W I +DEA ++++ + + + + HR ITGTP+Q L +L+ LL F+ FS
Sbjct: 620 WAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFS- 678
Query: 382 SRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPI 441
W E + + G HK + + R K V E LP + E + + S +
Sbjct: 679 -SW--EDFEEEHGKGREYGYASLHKELEPFLLRRVKKDV--EKSLPAKVEQILRMEMSAL 733
Query: 442 EEHFYQ 447
++ +Y+
Sbjct: 734 QKQYYK 739
Score = 66 (28.3 bits), Expect = 3.2e-06, Sum P(4) = 3.2e-06
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG---ARNSSLSDTSIMDISELVGADI 278
G L+V P L W EI T + +Y G +RN + + ++ + +I
Sbjct: 543 GPFLLVVPLSTLTSWQREI--QTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNI 600
Query: 279 VLTTYDVLKED 289
+LTTY++L +D
Sbjct: 601 LLTTYEILLKD 611
Score = 61 (26.5 bits), Expect = 3.2e-06, Sum P(4) = 3.2e-06
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ ++
Sbjct: 515 ILADEMGLGKTIQTIS 530
Score = 52 (23.4 bits), Expect = 3.2e-06, Sum P(4) = 3.2e-06
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 603 ILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDENARKCQR-----VSREENSDFTD 657
+LP + NCA ++S N + + ++ E R +R + RE F+D
Sbjct: 1081 MLPRMRNCAKQISFNGSEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSD 1140
Query: 658 AE 659
AE
Sbjct: 1141 AE 1142
Score = 38 (18.4 bits), Expect = 0.00050, Sum P(4) = 0.00050
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 185 KKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPV 219
K+ +R++ N+ ++ E + D+L+E V
Sbjct: 228 KRSSRRQATVNVSYKEDEEMKTDSDDLLEVCGEDV 262
Score = 37 (18.1 bits), Expect = 8.7e-05, Sum P(4) = 8.7e-05
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 797 DQLEASRKTLLDRLL-EIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQ 853
++L A K + L E + ++P+E D+D + + GP+ V EL F+
Sbjct: 975 EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEAGPLTVGDELLSQFK 1032
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 121 (47.7 bits), Expect = 3.2e-06, Sum P(4) = 3.2e-06
Identities = 34/126 (26%), Positives = 59/126 (46%)
Query: 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
W I +DEA ++++ + + + + HR ITGTP+Q L +L+ LL F+ FS
Sbjct: 604 WAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFS- 662
Query: 382 SRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPI 441
W E + + G HK + + R K V E LP + E + + S +
Sbjct: 663 -SW--EDFEEEHGKGREYGYASLHKELEPFLLRRVKKDV--EKSLPAKVEQILRMEMSAL 717
Query: 442 EEHFYQ 447
++ +Y+
Sbjct: 718 QKQYYK 723
Score = 66 (28.3 bits), Expect = 3.2e-06, Sum P(4) = 3.2e-06
Identities = 21/73 (28%), Positives = 35/73 (47%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG---ARNSSLSDTSIMDISELVGADI 278
G L+V P L W EI T + +Y G +RN + + ++ + +I
Sbjct: 527 GPFLLVVPLSTLTSWQREI--QTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNI 584
Query: 279 VLTTYDVLKEDLS 291
+LTTY++L +D S
Sbjct: 585 LLTTYEILLKDKS 597
Score = 61 (26.5 bits), Expect = 3.2e-06, Sum P(4) = 3.2e-06
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ ++
Sbjct: 499 ILADEMGLGKTIQTIS 514
Score = 51 (23.0 bits), Expect = 3.2e-06, Sum P(4) = 3.2e-06
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 603 ILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDENARKCQR-----VSREENSDFTD 657
+LP + NCA ++S N + + ++ E R +R + RE F+D
Sbjct: 1065 MLPRMRNCAKQISFNGSEGRRSRSRRYSGSDSDSITERKRPKKRGRPRTIPRENIKGFSD 1124
Query: 658 AE 659
AE
Sbjct: 1125 AE 1126
>UNIPROTKB|E2QUI5 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 EMBL:AAEX03002026
RefSeq:XP_848459.1 Ensembl:ENSCAFT00000012332 GeneID:488891
KEGG:cfa:488891 NextBio:20862162 Uniprot:E2QUI5
Length = 1711
Score = 121 (47.7 bits), Expect = 3.3e-06, Sum P(5) = 3.3e-06
Identities = 34/126 (26%), Positives = 59/126 (46%)
Query: 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
W I +DEA ++++ + + + + HR ITGTP+Q L +L+ LL F+ FS
Sbjct: 607 WAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFS- 665
Query: 382 SRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPI 441
W E + + G HK + + R K V E LP + E + + S +
Sbjct: 666 -SW--EDFEEEHGKGREYGYASLHKELEPFLLRRVKKDV--EKSLPAKVEQILRMEMSAL 720
Query: 442 EEHFYQ 447
++ +Y+
Sbjct: 721 QKQYYK 726
Score = 66 (28.3 bits), Expect = 3.3e-06, Sum P(5) = 3.3e-06
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG---ARNSSLSDTSIMDISELVGADI 278
G L+V P L W EI T + +Y G +RN + + ++ + +I
Sbjct: 530 GPFLLVVPLSTLTSWQREI--QTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNI 587
Query: 279 VLTTYDVLKED 289
+LTTY++L +D
Sbjct: 588 LLTTYEILLKD 598
Score = 61 (26.5 bits), Expect = 3.3e-06, Sum P(5) = 3.3e-06
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ ++
Sbjct: 502 ILADEMGLGKTIQTIS 517
Score = 52 (23.4 bits), Expect = 3.3e-06, Sum P(5) = 3.3e-06
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 603 ILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDENARKCQR-----VSREENSDFTD 657
+LP + NCA ++S N + + ++ E R +R + RE F+D
Sbjct: 1068 MLPRMRNCAKQISFNGSEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSD 1127
Query: 658 AE 659
AE
Sbjct: 1128 AE 1129
Score = 41 (19.5 bits), Expect = 3.3e-06, Sum P(5) = 3.3e-06
Identities = 20/91 (21%), Positives = 39/91 (42%)
Query: 864 KSQGDIASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDVRETVVVSKS 923
K + ++ S + +K + ++ S+ + S SSV + + E V +S+
Sbjct: 1347 KVKEEMKSDSSPLPSEKSDEDDDKLNESKSESKERSKKSSVSDAPVHITASGEPVPISEE 1406
Query: 924 PSELEVILGVIKNYCKTQLGREAISASSKQL 954
EL+ I CK ++ + A+ KQL
Sbjct: 1407 SEELDQKTFSI---CKERM--RPVKAALKQL 1432
Score = 38 (18.4 bits), Expect = 6.9e-05, Sum P(5) = 6.9e-05
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 797 DQLEASRKTLLDRLL-EIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQ 853
++L A K + L E + ++P+E D+D + + GP+ V EL F+
Sbjct: 962 EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFK 1019
Score = 38 (18.4 bits), Expect = 0.00046, Sum P(5) = 0.00046
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 185 KKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPV 219
K+ +R++ N+ ++ E + D+L+E V
Sbjct: 228 KRSSRRQATVNVSYKEDEEMKTDSDDLLEVCGEDV 262
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 134 (52.2 bits), Expect = 3.8e-06, Sum P(4) = 3.8e-06
Identities = 34/113 (30%), Positives = 57/113 (50%)
Query: 319 RIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 378
R+ W + LDEAQ ++S+++ ++ L+ ++R +TGTPIQ + +L+ LL F+ +
Sbjct: 648 RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 707
Query: 379 FS----ISRWWIEVIRDPYENG---DVGAMEFTHKFFKEIMCRSSKVHVSDEL 424
F + W+ + I EN D + H K M R K V +EL
Sbjct: 708 FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENEL 760
Score = 75 (31.5 bits), Expect = 3.8e-06, Sum P(4) = 3.8e-06
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 83 GILADEMGLGKTVELLACIFAH 104
GILADEMGLGKTV+ +A + AH
Sbjct: 544 GILADEMGLGKTVQSIA-LLAH 564
Score = 49 (22.3 bits), Expect = 3.8e-06, Sum P(4) = 3.8e-06
Identities = 19/75 (25%), Positives = 29/75 (38%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGAD---- 277
G LI+ PA L W E R P K Y G + L D
Sbjct: 573 GPFLIISPASTLNNWHQEFARFV-P-KFKVLPYWGNPHDRKVIRKFWSQKTLYTQDAPFH 630
Query: 278 IVLTTYDVLKEDLSH 292
+V+T+Y ++ +D+ +
Sbjct: 631 VVITSYQLVVQDVKY 645
Score = 38 (18.4 bits), Expect = 3.8e-06, Sum P(4) = 3.8e-06
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 996 DDNDTSVDALSPDELASASVTN 1017
DD+ SVD+ P + S+++
Sbjct: 1351 DDSFVSVDSAMPSPFSEISISS 1372
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 124 (48.7 bits), Expect = 4.2e-06, Sum P(4) = 4.2e-06
Identities = 44/166 (26%), Positives = 74/166 (44%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLYA-KHRWCITGTPIQRKLDDLYGLLRFL 374
LL+RI W + +DE +++ + T Y+ ++R +TGTP+Q L +L+ LL F+
Sbjct: 532 LLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLPELWALLNFV 591
Query: 375 KSSPFSISRWWIEVIRDPYEN-GDVGAMEFT-----------HKFFKEIMCRSSKVHVSD 422
F+ + + E P+ N G ME T HK + + R K V
Sbjct: 592 LPRIFNSIKSFDEWFNTPFANTGGQDKMELTEEESLLVIRRLHKVLRPFLLRRLKKDV-- 649
Query: 423 ELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNI 468
E +LP + E V S +++ Y + + Y + +R K I
Sbjct: 650 EAELPDKVEKVIRCQMSGLQQKLYYQMKKHGMLYVEDA-KRGKTGI 694
Score = 70 (29.7 bits), Expect = 4.2e-06, Sum P(4) = 4.2e-06
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ ++ I
Sbjct: 438 GILADEMGLGKTIQTISLI 456
Score = 50 (22.7 bits), Expect = 4.2e-06, Sum P(4) = 4.2e-06
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 495 LLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKI 539
L N++++L++ C HP V RS+ + + D +L + GK ++
Sbjct: 697 LQNTVMQLKKICNHPFVFEDVERSIDPTGFNYD-MLWRVSGKFEL 740
Score = 47 (21.6 bits), Expect = 4.2e-06, Sum P(4) = 4.2e-06
Identities = 17/68 (25%), Positives = 29/68 (42%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G L++ P L W E R P +K +Y+G + + S ++LT
Sbjct: 467 GPFLVIVPLSTLTNWTMEFERWA-PSIVKI-VYKGPPQVRKALHPQVRHSNF---QVLLT 521
Query: 282 TYDVLKED 289
TY+ + +D
Sbjct: 522 TYEYIIKD 529
>DICTYBASE|DDB_G0284171 [details] [associations]
symbol:DDB_G0284171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 dictyBase:DDB_G0284171
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 EMBL:AAFI02000063 GO:GO:0004003 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907
KO:K11367 RefSeq:XP_638708.1 ProteinModelPortal:Q54Q16
STRING:Q54Q16 EnsemblProtists:DDB0220640 GeneID:8624452
KEGG:ddi:DDB_G0284171 InParanoid:Q54Q16 OMA:DINATEF
ProtClustDB:CLSZ2732060 Uniprot:Q54Q16
Length = 1917
Score = 136 (52.9 bits), Expect = 4.6e-06, Sum P(6) = 4.6e-06
Identities = 38/132 (28%), Positives = 68/132 (51%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFLK 375
L I W + +DEA ++++ + E+ L+LY +R +TGTP+Q L +L+ LL FL
Sbjct: 880 LGTIKWEFLAVDEAHRLKNSESVLHEV-LKLYNTTNRLLVTGTPLQNSLKELWNLLNFLM 938
Query: 376 SSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSW 435
+ F+ + + + D EN + + H K + R K V E LPP+ E +
Sbjct: 939 PNKFTSLKDFQDQYSDLKENDQIAQL---HSVLKPHLLRRIKKDV--EKSLPPKTERILR 993
Query: 436 LTFSPIEEHFYQ 447
+ S +++ +Y+
Sbjct: 994 VDLSNVQKKYYK 1005
Score = 61 (26.5 bits), Expect = 4.6e-06, Sum P(6) = 4.6e-06
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ ++
Sbjct: 777 ILADEMGLGKTIQTIS 792
Score = 51 (23.0 bits), Expect = 6.1e-06, Sum P(5) = 6.1e-06
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 758 LIRKIEEAISGSLNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLL 811
L + +E G K+ L + + Y Q++ D+ E K LLD ++
Sbjct: 1008 LTKNFQELNKGKGEKTTLLNIMTELKKTCNHPYLYQNARDECELGAKDLLDSMI 1061
Score = 50 (22.7 bits), Expect = 4.6e-06, Sum P(6) = 4.6e-06
Identities = 18/75 (24%), Positives = 32/75 (42%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNS-------SLSDTSIMDISELV 274
G L+V P + W E + P ++ +Y G S T+ + +L
Sbjct: 805 GPFLVVVPLSTIENWQREFAKWA-P-AMNVIVYTGTGQSRDIIRLYEFYTTNRLGKKKL- 861
Query: 275 GADIVLTTYDVLKED 289
+++LTTYD + +D
Sbjct: 862 NFNVLLTTYDFILKD 876
Score = 48 (22.0 bits), Expect = 4.6e-06, Sum P(6) = 4.6e-06
Identities = 24/115 (20%), Positives = 55/115 (47%)
Query: 713 SVAQQEFRKSYMQVCN-ALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLN 771
+ A +E S+ +V N + +E+Q +A W + + A+ K E K + + G
Sbjct: 1282 TTAGEELLNSF-RVANFSTTSKEEQQNATWEDIIPDADRQKAVQEE---KDQLLLLGPRR 1337
Query: 772 KSRALRTASRYRSISG---LTYHIQSSLDQLEASRKT-LLDRLLEIDQTMEKPKE 822
++ + + R+IS +T ++ ++Q+ ++ +L R L+ T ++ +E
Sbjct: 1338 RTETSSSTAPTRNISDPVVITARLKKDINQIYNKKEIKILIRSLKKFGTHKRCRE 1392
Score = 45 (20.9 bits), Expect = 4.6e-06, Sum P(6) = 4.6e-06
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 491 EAAKLLNSLLKLRQACCHP 509
E LLN + +L++ C HP
Sbjct: 1021 EKTTLLNIMTELKKTCNHP 1039
Score = 42 (19.8 bits), Expect = 4.6e-06, Sum P(6) = 4.6e-06
Identities = 26/125 (20%), Positives = 56/125 (44%)
Query: 804 KTLLDRLLEI-DQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQDYEARLFRL 862
K LL+ + D ++ +EE + + + + G + I + + + +D ++ L+
Sbjct: 1794 KELLENFRSLSDSKVQISREEKVSKTKKYLLSLGK-EISIILDEKKSANIKDLDSHLW-Y 1851
Query: 863 KKSQGDIASAEEA---VDLQKKNSSLNRFYWYLSQP-NKNSTSSSVGNEEIKRRDVRETV 918
S+ + +E D KK+SS N S + NS+SS+ N + + +
Sbjct: 1852 SASKYTASGGKELKSLYDKMKKSSSSNNDSSSSSSSRSSNSSSSNNSNSSSSSKPALK-L 1910
Query: 919 VVSKS 923
+++KS
Sbjct: 1911 IINKS 1915
>UNIPROTKB|I3L6N4 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000022643
Uniprot:I3L6N4
Length = 1798
Score = 121 (47.7 bits), Expect = 5.2e-06, Sum P(5) = 5.2e-06
Identities = 34/126 (26%), Positives = 59/126 (46%)
Query: 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
W I +DEA ++++ + + + + HR ITGTP+Q L +L+ LL F+ FS
Sbjct: 602 WAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFS- 660
Query: 382 SRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPI 441
W E + + G HK + + R K V E LP + E + + S +
Sbjct: 661 -SW--EDFEEEHGKGREYGYASLHKELEPFLLRRVKKDV--EKSLPAKVEQILRMEMSAL 715
Query: 442 EEHFYQ 447
++ +Y+
Sbjct: 716 QKQYYK 721
Score = 66 (28.3 bits), Expect = 5.2e-06, Sum P(5) = 5.2e-06
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG---ARNSSLSDTSIMDISELVGADI 278
G L+V P L W EI T + +Y G +RN + + ++ + +I
Sbjct: 525 GPFLLVVPLSTLTSWQREI--QTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNI 582
Query: 279 VLTTYDVLKED 289
+LTTY++L +D
Sbjct: 583 LLTTYEILLKD 593
Score = 61 (26.5 bits), Expect = 5.2e-06, Sum P(5) = 5.2e-06
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ ++
Sbjct: 497 ILADEMGLGKTIQTIS 512
Score = 52 (23.4 bits), Expect = 5.2e-06, Sum P(5) = 5.2e-06
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 603 ILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDENARKCQR-----VSREENSDFTD 657
+LP + NCA ++S N + + ++ E R +R + RE F+D
Sbjct: 1063 MLPRMRNCAKQISFNGSEGRRSRNRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSD 1122
Query: 658 AE 659
AE
Sbjct: 1123 AE 1124
Score = 40 (19.1 bits), Expect = 5.2e-06, Sum P(5) = 5.2e-06
Identities = 38/186 (20%), Positives = 74/186 (39%)
Query: 752 KDFSAELIRKIEEAISGSLNKSRALRTASRYRSISGLTY--HIQSSLDQL--EAS----- 802
K S +L RK + +SG+ R A + +++ + I+S L E S
Sbjct: 1305 KLLSKDLARKEAQRLSGAGGSKRRKARAKKNKAMKSIKVKEEIKSDSSPLPSEKSDEDDD 1364
Query: 803 RKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQDYEARLFR- 861
+K +D + + +K K E + + +C+ E +E + E R
Sbjct: 1365 KKENMDEITSVKHPNKKIKTEGDSEEKP--------EPDVCIKKEPEEKREAKEKENKRE 1416
Query: 862 LKKSQGDIASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGNE-EIKRRDVRETVVV 920
LK+ +I E+ D+++K+ + +N ++ E +IK + E+
Sbjct: 1417 LKR---EIKEKEDKKDIKEKD---------FKEKRENKVKEAIQKEKDIKEEKLNESKSE 1464
Query: 921 SKSPSE 926
SK S+
Sbjct: 1465 SKERSK 1470
Score = 38 (18.4 bits), Expect = 6.8e-05, Sum P(4) = 6.8e-05
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 797 DQLEASRKTLLDRLL-EIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQ 853
++L A K + L E + ++P+E D+D + + GP+ V EL F+
Sbjct: 957 EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFK 1014
Score = 38 (18.4 bits), Expect = 0.00073, Sum P(5) = 0.00073
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 185 KKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPV 219
K+ +R++ N+ ++ E + D+L+E V
Sbjct: 223 KRSSRRQATVNVSYKEDEEMKTDSDDLLEVCGEDV 257
>UNIPROTKB|I3LDG1 [details] [associations]
symbol:LOC100738357 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00560000077077 EMBL:FP236283
Ensembl:ENSSSCT00000031310 OMA:ENWRTEL Uniprot:I3LDG1
Length = 323
Score = 134 (52.2 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 37/133 (27%), Positives = 68/133 (51%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYA-KHRWCITGTPIQRKLDDLYGLLRFLK 375
L +I W + +DEA +++ E L+L A +H+ +TGTP+Q +++L+ LL FL+
Sbjct: 9 LKKIHWSCVIIDEAHRLKNRNCKLLE-GLKLMALEHKVLLTGTPLQNSVEELFSLLNFLE 67
Query: 376 SSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSW 435
S F ++E D V ++ K +M R K V E L P++E +
Sbjct: 68 PSQFPSETAFLEEFGDLKTEEQVKKLQ---SILKPMMLRRLKDDV--EKNLAPKQETIIE 122
Query: 436 LTFSPIEEHFYQS 448
+ + I++ +Y++
Sbjct: 123 VELTNIQKKYYRA 135
Score = 49 (22.3 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 495 LLNSLLKLRQACCHP 509
L+N++++LR+ C HP
Sbjct: 156 LINTMMELRKCCNHP 170
>UNIPROTKB|I3LIS2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:CU570924
EMBL:CU928692 Ensembl:ENSSSCT00000032432 Uniprot:I3LIS2
Length = 1799
Score = 121 (47.7 bits), Expect = 5.3e-06, Sum P(5) = 5.3e-06
Identities = 34/126 (26%), Positives = 59/126 (46%)
Query: 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
W I +DEA ++++ + + + + HR ITGTP+Q L +L+ LL F+ FS
Sbjct: 603 WAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFS- 661
Query: 382 SRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPI 441
W E + + G HK + + R K V E LP + E + + S +
Sbjct: 662 -SW--EDFEEEHGKGREYGYASLHKELEPFLLRRVKKDV--EKSLPAKVEQILRMEMSAL 716
Query: 442 EEHFYQ 447
++ +Y+
Sbjct: 717 QKQYYK 722
Score = 66 (28.3 bits), Expect = 5.3e-06, Sum P(5) = 5.3e-06
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG---ARNSSLSDTSIMDISELVGADI 278
G L+V P L W EI T + +Y G +RN + + ++ + +I
Sbjct: 526 GPFLLVVPLSTLTSWQREI--QTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNI 583
Query: 279 VLTTYDVLKED 289
+LTTY++L +D
Sbjct: 584 LLTTYEILLKD 594
Score = 61 (26.5 bits), Expect = 5.3e-06, Sum P(5) = 5.3e-06
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ ++
Sbjct: 498 ILADEMGLGKTIQTIS 513
Score = 52 (23.4 bits), Expect = 5.3e-06, Sum P(5) = 5.3e-06
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 603 ILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDENARKCQR-----VSREENSDFTD 657
+LP + NCA ++S N + + ++ E R +R + RE F+D
Sbjct: 1064 MLPRMRNCAKQISFNGSEGRRSRNRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSD 1123
Query: 658 AE 659
AE
Sbjct: 1124 AE 1125
Score = 40 (19.1 bits), Expect = 5.3e-06, Sum P(5) = 5.3e-06
Identities = 38/186 (20%), Positives = 74/186 (39%)
Query: 752 KDFSAELIRKIEEAISGSLNKSRALRTASRYRSISGLTY--HIQSSLDQL--EAS----- 802
K S +L RK + +SG+ R A + +++ + I+S L E S
Sbjct: 1306 KLLSKDLARKEAQRLSGAGGSKRRKARAKKNKAMKSIKVKEEIKSDSSPLPSEKSDEDDD 1365
Query: 803 RKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQDYEARLFR- 861
+K +D + + +K K E + + +C+ E +E + E R
Sbjct: 1366 KKENMDEITSVKHPNKKIKTEGDSEEKP--------EPDVCIKKEPEEKREAKEKENKRE 1417
Query: 862 LKKSQGDIASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGNE-EIKRRDVRETVVV 920
LK+ +I E+ D+++K+ + +N ++ E +IK + E+
Sbjct: 1418 LKR---EIKEKEDKKDIKEKD---------FKEKRENKVKEAIQKEKDIKEEKLNESKSE 1465
Query: 921 SKSPSE 926
SK S+
Sbjct: 1466 SKERSK 1471
Score = 38 (18.4 bits), Expect = 6.8e-05, Sum P(4) = 6.8e-05
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 797 DQLEASRKTLLDRLL-EIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQ 853
++L A K + L E + ++P+E D+D + + GP+ V EL F+
Sbjct: 958 EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFK 1015
Score = 38 (18.4 bits), Expect = 0.00073, Sum P(5) = 0.00073
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 185 KKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPV 219
K+ +R++ N+ ++ E + D+L+E V
Sbjct: 224 KRSSRRQATVNVSYKEDEEMKTDSDDLLEVCGEDV 258
>DICTYBASE|DDB_G0267556 [details] [associations]
symbol:DDB_G0267556 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0267556
GO:GO:0005524 GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_647125.1 ProteinModelPortal:Q55GQ9
EnsemblProtists:DDB0233433 GeneID:8615929 KEGG:ddi:DDB_G0267556
InParanoid:Q55GQ9 OMA:CANVVIF ProtClustDB:CLSZ2501118
Uniprot:Q55GQ9
Length = 1159
Score = 108 (43.1 bits), Expect = 5.4e-06, Sum P(4) = 5.4e-06
Identities = 38/135 (28%), Positives = 63/135 (46%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L R + + LDEAQ ++++ + + ++ A HR +TGTP+Q L +L+ LL FL
Sbjct: 664 LKRFDYSFLILDEAQNIKNSDSKRYKNIFKIGAHHRLLLTGTPLQNNLYELWSLLNFLMP 723
Query: 377 SPFSISRWWIEVIRDPYE-NGDV--GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECV 433
F + ++ E NGD A+ K + R K VS EL+ P+ E V
Sbjct: 724 HIFGSVKKDNYLLNQLLEYNGDDCDSAITRMKKILSPFILRRLKSTVSKELK--PKIEHV 781
Query: 434 SWLTFSPIEEHFYQS 448
++ Y++
Sbjct: 782 EICKLPKFQDETYKN 796
Score = 84 (34.6 bits), Expect = 5.4e-06, Sum P(4) = 5.4e-06
Identities = 18/30 (60%), Positives = 24/30 (80%)
Query: 83 GILADEMGLGKTVELLACIFAHRKPASDDS 112
GILADEMGLGKTV+ ++ + AH K A +D+
Sbjct: 563 GILADEMGLGKTVQTIS-LLAHIKEAYNDN 591
Score = 60 (26.2 bits), Expect = 5.4e-06, Sum P(4) = 5.4e-06
Identities = 23/68 (33%), Positives = 33/68 (48%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL-VGAD--I 278
G L+V PA ILA W+ E T SL Y G N + ++ + G D +
Sbjct: 592 GPHLVVVPATILANWEREF--QTWCPSLSIVRYYG--NLREREELRYELKKKRPGKDFNV 647
Query: 279 VLTTYDVL 286
+LTTY++L
Sbjct: 648 ILTTYNLL 655
Score = 38 (18.4 bits), Expect = 5.4e-06, Sum P(4) = 5.4e-06
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 495 LLNSLLKLRQACCHP 509
L N L++LR+A HP
Sbjct: 895 LNNILMQLRKAANHP 909
>ASPGD|ASPL0000056677 [details] [associations]
symbol:AN1024 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000172362 EnsemblFungi:CADANIAT00001623 OMA:NNITELW
Uniprot:C8VTY9
Length = 868
Score = 95 (38.5 bits), Expect = 5.6e-06, Sum P(4) = 5.6e-06
Identities = 39/167 (23%), Positives = 70/167 (41%)
Query: 321 FWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
+ WR I +DE +++ + L + +R ITGTP+Q + +L+ LL FL F
Sbjct: 326 YQWRYIIVDEGHRLKNMNCRLIKELLSYNSANRLLITGTPLQNNITELWSLLHFLLPEIF 385
Query: 380 ----SISRWW-IEVIRDPYENGDVGAME--------FTHKFFKEIMCRSSKVHVSDELQL 426
S W+ + D NG +E H K + R K V E L
Sbjct: 386 NDLNSFQNWFDFSSVLD--NNGQTDMIERRKRTLVSTMHSILKPFLLRRVKTDV--ESAL 441
Query: 427 PPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQ-RLKDNILKRN 472
P + E + + + ++ Y+ E G R+ ++ + + ++ +N
Sbjct: 442 PKKREYILYAPLTLEQKDLYR---EILNGTGRQYLEEKATERLMAKN 485
Score = 75 (31.5 bits), Expect = 5.6e-06, Sum P(4) = 5.6e-06
Identities = 21/72 (29%), Positives = 34/72 (47%)
Query: 221 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLS-DTSIMDISELVGAD-- 277
+G LI P ++ W E R T PG +KT +Y G R+ M++ + D
Sbjct: 250 SGPFLISAPLSTVSNWVDEFARWT-PG-IKTVLYHGTRDERAQLRKKFMNLRDQKSPDFP 307
Query: 278 IVLTTYDVLKED 289
+V T+Y++ D
Sbjct: 308 VVCTSYEICMND 319
Score = 71 (30.1 bits), Expect = 5.6e-06, Sum P(4) = 5.6e-06
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKTV+ ++ I
Sbjct: 223 GILADEMGLGKTVQAISLI 241
Score = 44 (20.5 bits), Expect = 5.6e-06, Sum P(4) = 5.6e-06
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGK 536
K+ N +++ R AC P + + P S+DE L+ GK
Sbjct: 588 KMQNPVMQARLACNSPH---NFYWPWAEDPSSIDETLVTASGK 627
>UNIPROTKB|J9NSS6 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000043290 Uniprot:J9NSS6
Length = 1379
Score = 131 (51.2 bits), Expect = 5.6e-06, Sum P(4) = 5.6e-06
Identities = 35/133 (26%), Positives = 64/133 (48%)
Query: 315 TLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 374
T+L I W + +DEA ++++ + + + + HR ITGTP+Q L +L+ LL F+
Sbjct: 604 TVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFI 663
Query: 375 KSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVS 434
F +W E + + G + HK + + R K V E LP + E +
Sbjct: 664 MPEKFE---FW-EDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDV--EKSLPAKVEQIL 717
Query: 435 WLTFSPIEEHFYQ 447
+ S +++ +Y+
Sbjct: 718 RVEMSALQKQYYK 730
Score = 61 (26.5 bits), Expect = 5.6e-06, Sum P(4) = 5.6e-06
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ ++
Sbjct: 506 ILADEMGLGKTIQTIS 521
Score = 53 (23.7 bits), Expect = 5.6e-06, Sum P(4) = 5.6e-06
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG---ARNSSLSDTSIMDISELVGADI 278
G LIV P L W E P + +Y G +RN+ I ++ + +
Sbjct: 534 GPFLIVVPLSTLTSWQREFEIWA-P-EINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 591
Query: 279 VLTTYDVLKED 289
++TTY++L +D
Sbjct: 592 LITTYEILLKD 602
Score = 47 (21.6 bits), Expect = 5.6e-06, Sum P(4) = 5.6e-06
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 450 HETCVGYAREVIQRLKDNILKRNVPG 475
H +CV +E ++LK+N + PG
Sbjct: 1178 HNSCVSAMQEYEEQLKENASEGKGPG 1203
Score = 44 (20.5 bits), Expect = 2.6e-05, Sum P(5) = 2.6e-05
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 984 IRMATTRLHLKEDDNDTSVDALSPDELASASVTNSSE 1020
IR +T + + D+DT + AS S T+ S+
Sbjct: 1073 IRSSTKKAQTNDSDSDTESKRQAQRSSASESETDDSD 1109
Score = 37 (18.1 bits), Expect = 2.6e-05, Sum P(5) = 2.6e-05
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 488 THAEAAKLLNSLLKLRQACCH 508
T + LN +++L++ C H
Sbjct: 744 TRGSTSGFLNIVMELKKCCNH 764
>FB|FBgn0023395 [details] [associations]
symbol:Chd3 "Chd3" species:7227 "Drosophila melanogaster"
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS;NAS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:AE014296 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0006333
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 GeneTree:ENSGT00560000076896
InterPro:IPR009463 Pfam:PF06465 EMBL:AY071503 EMBL:AF007780
RefSeq:NP_649111.1 ProteinModelPortal:O16102 SMR:O16102
DIP:DIP-21327N MINT:MINT-1651376 STRING:O16102 PaxDb:O16102
EnsemblMetazoa:FBtr0074998 GeneID:40111 KEGG:dme:Dmel_CG9594
UCSC:CG9594-RA CTD:1107 FlyBase:FBgn0023395 InParanoid:O16102
OMA:IKWRDLA OrthoDB:EOG4JH9WN PhylomeDB:O16102 GenomeRNAi:40111
NextBio:817050 Bgee:O16102 GermOnline:CG9594 Uniprot:O16102
Length = 892
Score = 121 (47.7 bits), Expect = 5.6e-06, Sum P(3) = 5.6e-06
Identities = 33/128 (25%), Positives = 61/128 (47%)
Query: 320 IFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
I W + +DEA + SN + + + ++ +TGTP+Q L++L+ LL FL S F
Sbjct: 401 IDWAALVVDEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEELFHLLNFLSSGKF 460
Query: 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ + + D + V + H+ + M R K V + PP+ E + + S
Sbjct: 461 NDLQTFQAEFTDVSKEEQVKRL---HEILEPHMLRRLKADVLKSM--PPKSEFIVRVELS 515
Query: 440 PIEEHFYQ 447
+++ FY+
Sbjct: 516 SMQKKFYK 523
Score = 63 (27.2 bits), Expect = 5.6e-06, Sum P(3) = 5.6e-06
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 84 ILADEMGLGKTVELLACIFA 103
ILADEMGLGKT++ + +++
Sbjct: 289 ILADEMGLGKTIQTVVFLYS 308
Score = 58 (25.5 bits), Expect = 5.6e-06, Sum P(3) = 5.6e-06
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 495 LLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGE-EALRKLVMAL 552
LLN ++ LR+ C HP + S SP + E+ + TK G+ + L K++ L
Sbjct: 544 LLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYEMSSL----TKASGKLDLLSKMLKQL 598
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 123 (48.4 bits), Expect = 5.8e-06, Sum P(3) = 5.8e-06
Identities = 35/136 (25%), Positives = 63/136 (46%)
Query: 312 VIPTLLTRIFWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGL 370
+I + + F WR + +DEA +++ + +E+ +R +TGTP+Q L +L+ L
Sbjct: 274 IIERAVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWAL 333
Query: 371 LRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQE 430
L FL F+ S + GD +E H + + R K V E L P++
Sbjct: 334 LNFLLPDVFNSSEDFDAWFDTNNCLGDTKLVERLHTVLRPFLLRRIKADV--EKSLLPKK 391
Query: 431 ECVSWLTFSPIEEHFY 446
E ++ S ++ +Y
Sbjct: 392 EIKIYVGLSKMQREWY 407
Score = 66 (28.3 bits), Expect = 5.8e-06, Sum P(3) = 5.8e-06
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ ++ +
Sbjct: 184 GILADEMGLGKTLQTISLL 202
Score = 55 (24.4 bits), Expect = 5.8e-06, Sum P(3) = 5.8e-06
Identities = 22/81 (27%), Positives = 38/81 (46%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALN 553
+LLN L++LR+ C HP + G P + D L+V GK + L KL+ L
Sbjct: 428 RLLNVLMQLRKCCNHPYL-FDGAEP--GPPYTTDLHLVVNSGKMVV-----LDKLLPKLK 479
Query: 554 GLAGIALIEKNLSQAVSLYKE 574
LI +++ + + ++
Sbjct: 480 EQGSRVLIFSQMTRVLDILED 500
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 127 (49.8 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 36/123 (29%), Positives = 59/123 (47%)
Query: 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS- 380
W + LDEAQ ++S++++ + L ++R +TGTPIQ + +L+ LL F+ S F
Sbjct: 971 WQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTGTPIQNTMQELWALLHFIMPSLFDS 1030
Query: 381 ---ISRWWIEVIRDPYE-NGDVGAMEFT--HKFFKEIMCRSSKVHVSDELQLPPQEECVS 434
S W+ + I + N + + H K M R K +V EL ++E
Sbjct: 1031 HNEFSEWFSKDIESHAQSNTQLNEQQLKRLHMILKPFMLRRVKKNVQSELGEKIEKEVYC 1090
Query: 435 WLT 437
LT
Sbjct: 1091 DLT 1093
Score = 67 (28.6 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 13/17 (76%), Positives = 16/17 (94%)
Query: 83 GILADEMGLGKTVELLA 99
GILADEMGLGKTV+ ++
Sbjct: 863 GILADEMGLGKTVQSIS 879
Score = 56 (24.8 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGA 257
G L++ PA L W EITR P LK Y G+
Sbjct: 892 GPFLVIAPASTLHNWQQEITRFV-P-KLKCIPYWGS 925
>UNIPROTKB|F1MLB2 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:DAAA02028315 EMBL:DAAA02028312 EMBL:DAAA02028313
EMBL:DAAA02028314 IPI:IPI01017729 Ensembl:ENSBTAT00000027215
Uniprot:F1MLB2
Length = 2537
Score = 123 (48.4 bits), Expect = 6.0e-06, Sum P(6) = 6.0e-06
Identities = 36/135 (26%), Positives = 66/135 (48%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L I W + +DEA +++ + + +H+ +TGTP+Q +++L+ LL FL+
Sbjct: 890 LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 949
Query: 377 SPFSISRWWIEVIRDPYENGDVGAMEFTHKF---FKEIMCRSSKVHVSDELQLPPQEECV 433
S F E ++D GD+ E K K +M R K V E L P++E +
Sbjct: 950 SQFPSES---EFLKD---FGDLKTEEQVQKLQAILKPMMLRRLKEDV--EKNLAPKQETI 1001
Query: 434 SWLTFSPIEEHFYQS 448
+ + I++ +Y++
Sbjct: 1002 IEVELTNIQKKYYRA 1016
Score = 63 (27.2 bits), Expect = 6.0e-06, Sum P(6) = 6.0e-06
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ +A
Sbjct: 786 ILADEMGLGKTIQSIA 801
Score = 61 (26.5 bits), Expect = 6.0e-06, Sum P(6) = 6.0e-06
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 489 HAEAAKLLNSLLKLRQACCHPQVGSSG 515
H LLN++++LR+ C HP + ++G
Sbjct: 1031 HTNMPNLLNTMMELRKCCNHPYLINAG 1057
Score = 51 (23.0 bits), Expect = 6.0e-06, Sum P(6) = 6.0e-06
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 995 EDDNDTSVDA--LSPDELASASVTNSS 1019
EDD+D+ +D LSP +S+S ++SS
Sbjct: 2020 EDDSDSELDLSKLSPSSSSSSSSSSSS 2046
Score = 48 (22.0 bits), Expect = 6.0e-06, Sum P(6) = 6.0e-06
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGA 257
G L++ P + W+ E T + T +Y G+
Sbjct: 813 GPFLVIAPLSTITNWEREFNTWTE---MNTIVYHGS 845
Score = 47 (21.6 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 17/61 (27%), Positives = 23/61 (37%)
Query: 617 NEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLS---DLSENGF 673
+ H PG + T A + + EE+ D D ED LS D SE F
Sbjct: 2459 HHHHHPGLRATGYPSSPATTTSATALRLPPLQPEEDEDDED-EDDDDDLSQGYDSSERDF 2517
Query: 674 N 674
+
Sbjct: 2518 S 2518
Score = 45 (20.9 bits), Expect = 0.00054, Sum P(5) = 0.00054
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 499 LLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNG 554
L KL + SS S +S +E L ++K+ EE+L L M+ +G
Sbjct: 2029 LSKLSPSSSSSSSSSSSSSSTDESEDEKEEKLTADQSRSKLYDEESLLSLPMSQDG 2084
Score = 43 (20.2 bits), Expect = 6.0e-06, Sum P(6) = 6.0e-06
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 626 EKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDR 677
E AFK+ I K QR +R E +DF G D F+ DR
Sbjct: 1735 EAAFKLKEIA----RREKQQRWTRREQTDFYRVVSTFGVEYDPDTMQFHWDR 1782
Score = 43 (20.2 bits), Expect = 6.0e-06, Sum P(6) = 6.0e-06
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 770 LNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRM 828
L+K+ + R +I+G+ + ++ L RK ++E D K EED+D++
Sbjct: 1231 LDKAVLQSMSGRDGNITGIQQFSKKEIEDL--LRKGAYAAIMEEDDEGSKFCEEDIDQI 1287
>UNIPROTKB|E2QUR1 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AAEX03009852
Ensembl:ENSCAFT00000009072 Uniprot:E2QUR1
Length = 2200
Score = 123 (48.4 bits), Expect = 6.3e-06, Sum P(6) = 6.3e-06
Identities = 36/135 (26%), Positives = 66/135 (48%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L I W + +DEA +++ + + +H+ +TGTP+Q +++L+ LL FL+
Sbjct: 554 LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 613
Query: 377 SPFSISRWWIEVIRDPYENGDVGAMEFTHKF---FKEIMCRSSKVHVSDELQLPPQEECV 433
S F E ++D GD+ E K K +M R K V E L P++E +
Sbjct: 614 SQFPSES---EFLKD---FGDLKTEEQVQKLQAILKPMMLRRLKEDV--EKNLAPKQETI 665
Query: 434 SWLTFSPIEEHFYQS 448
+ + I++ +Y++
Sbjct: 666 IEVELTNIQKKYYRA 680
Score = 63 (27.2 bits), Expect = 6.3e-06, Sum P(6) = 6.3e-06
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ +A
Sbjct: 450 ILADEMGLGKTIQSIA 465
Score = 57 (25.1 bits), Expect = 6.3e-06, Sum P(6) = 6.3e-06
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 489 HAEAAKLLNSLLKLRQACCHP 509
H LLN++++LR+ C HP
Sbjct: 695 HTNMPNLLNTMMELRKCCNHP 715
Score = 51 (23.0 bits), Expect = 6.3e-06, Sum P(6) = 6.3e-06
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 995 EDDNDTSVDA--LSPDELASASVTNSS 1019
EDD+D+ +D LSP +S+S ++SS
Sbjct: 1683 EDDSDSELDLSKLSPSSSSSSSSSSSS 1709
Score = 48 (22.0 bits), Expect = 6.3e-06, Sum P(6) = 6.3e-06
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGA 257
G L++ P + W+ E T + T +Y G+
Sbjct: 477 GPFLVIAPLSTITNWEREFNTWTE---MNTIVYHGS 509
Score = 47 (21.6 bits), Expect = 0.00023, Sum P(5) = 0.00023
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 499 LLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNG 554
L KL + SS S +S +E L ++K+ EE+L L M+ +G
Sbjct: 1692 LSKLSPSSSSSSSSSSSSSSTDESEDEKEEKLSADRSRSKLYDEESLLSLTMSQDG 1747
Score = 46 (21.3 bits), Expect = 2.6e-05, Sum P(5) = 2.6e-05
Identities = 17/61 (27%), Positives = 23/61 (37%)
Query: 617 NEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLS---DLSENGF 673
+ H PG + T A + + EE+ D D ED LS D SE F
Sbjct: 2122 HHHHHPGLRATGYPSSPATTTSGTALRLPPLQPEEDEDDED-EDDDDDLSQGYDSSERDF 2180
Query: 674 N 674
+
Sbjct: 2181 S 2181
Score = 43 (20.2 bits), Expect = 6.3e-06, Sum P(6) = 6.3e-06
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 626 EKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDR 677
E AFK+ I K QR +R E +DF G D F+ DR
Sbjct: 1398 EAAFKLKEIA----RREKQQRWTRREQTDFYRVVSTFGVEYDPDTMQFHWDR 1445
Score = 43 (20.2 bits), Expect = 6.3e-06, Sum P(6) = 6.3e-06
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 770 LNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRM 828
L+K+ + R +I+G+ + ++ L RK ++E D K EED+D++
Sbjct: 894 LDKAVLQSMSGRDGNITGIQQFSKKEIEDL--LRKGAYAAIMEEDDEGSKFCEEDIDQI 950
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 134 (52.2 bits), Expect = 6.4e-06, Sum P(3) = 6.4e-06
Identities = 34/113 (30%), Positives = 57/113 (50%)
Query: 319 RIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 378
R+ W + LDEAQ ++S+++ ++ L+ ++R +TGTPIQ + +L+ LL F+ +
Sbjct: 639 RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 698
Query: 379 FS----ISRWWIEVIRDPYENG---DVGAMEFTHKFFKEIMCRSSKVHVSDEL 424
F + W+ + I EN D + H K M R K V +EL
Sbjct: 699 FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENEL 751
Score = 78 (32.5 bits), Expect = 6.4e-06, Sum P(3) = 6.4e-06
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 83 GILADEMGLGKTVELLACI--FAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECI 140
GILADEMGLGKTV+ +A + A R+ + I A + + + R + + +V
Sbjct: 541 GILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPY 600
Query: 141 CGAVSESRKYKGLWVQ 156
G + +K K L+ Q
Sbjct: 601 WGNPHDRKKKKTLYTQ 616
Score = 57 (25.1 bits), Expect = 0.00075, Sum P(3) = 0.00075
Identities = 18/71 (25%), Positives = 32/71 (45%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+ PA L W E TR P K Y G + ++ ++ +V+T
Sbjct: 570 GPFLIISPASTLNNWHQEFTRFV-P-KFKVLPYWGNPHDRKKKKTLY--TQDAPFHVVIT 625
Query: 282 TYDVLKEDLSH 292
+Y ++ +D+ +
Sbjct: 626 SYQLVVQDVKY 636
Score = 37 (18.1 bits), Expect = 6.4e-06, Sum P(3) = 6.4e-06
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 996 DDNDTSVDALSPDELASASVTN 1017
DD+ SVD+ P + S+++
Sbjct: 1340 DDSFISVDSAMPSPFSEISISS 1361
>DICTYBASE|DDB_G0280705 [details] [associations]
symbol:DDB_G0280705 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
dictyBase:DDB_G0280705 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0003682 EMBL:AAFI02000037
GO:GO:0004003 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
KO:K14437 RefSeq:XP_641133.1 ProteinModelPortal:Q54UZ8
EnsemblProtists:DDB0220644 GeneID:8622691 KEGG:ddi:DDB_G0280705
InParanoid:Q54UZ8 OMA:YPHERID ProtClustDB:CLSZ2846801
Uniprot:Q54UZ8
Length = 2373
Score = 139 (54.0 bits), Expect = 6.4e-06, Sum P(4) = 6.4e-06
Identities = 40/147 (27%), Positives = 76/147 (51%)
Query: 315 TLLTRIFWWRICLDEAQMVESNAAAATEMALRLYA-KHRWCITGTPIQRKLDDLYGLLRF 373
T L+RI W + +DEA +++ + T + LR Y+ H +TGTP+Q +L+ LL F
Sbjct: 641 THLSRIPWKYLVIDEAHRLKNKSCKLT-IELRSYSFDHLLLLTGTPLQNNTQELWSLLNF 699
Query: 374 LKSSPFS-ISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEEC 432
L FS + ++ +E D E+ V +++ K + R K V E + P+EE
Sbjct: 700 LDPKQFSNLDQFLLEY-GDLKESSQVESLQ---AILKPYLLRRMKERV--EKSIAPKEET 753
Query: 433 VSWLTFSPIEEHFYQSQHETCVGYARE 459
+ + + +++ +Y++ +E + R+
Sbjct: 754 IVEVELTTVQKKYYRAIYEKNFSFLRK 780
Score = 61 (26.5 bits), Expect = 6.4e-06, Sum P(4) = 6.4e-06
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 84 ILADEMGLGKTVELLACIFAHRK 106
IL DEMGLGKTV+ ++ + RK
Sbjct: 531 ILGDEMGLGKTVQSVSILETLRK 553
Score = 60 (26.2 bits), Expect = 6.4e-06, Sum P(4) = 6.4e-06
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 491 EAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLS-MDEILMVLI 534
+ LLN +++LR+ C HP + + G+ + S + D+I LI
Sbjct: 786 QGPSLLNIMMELRKCCNHPYL-TKGVEQSETSSIKDKDQIFQKLI 829
Score = 41 (19.5 bits), Expect = 6.4e-06, Sum P(4) = 6.4e-06
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 712 LSVAQQEFRKSYMQVCNALDDREKQYSAWW 741
+++ Q + Y+ V L D +WW
Sbjct: 1392 MALVSQILKLGYLSVAELLGDLSDAPFSWW 1421
Score = 39 (18.8 bits), Expect = 1.0e-05, Sum P(4) = 1.0e-05
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 985 RMATTRLHLKEDDND---TSVDALSPDELASASVTNSSEKF 1022
R T+++ D N+ +S + + DEL NS KF
Sbjct: 979 RAVLTKMNSLADSNNGNNSSSSSTTKDELPDKETINSLLKF 1019
>UNIPROTKB|F1S8J5 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:FP340603 Ensembl:ENSSSCT00000002379
ArrayExpress:F1S8J5 Uniprot:F1S8J5
Length = 2569
Score = 123 (48.4 bits), Expect = 6.4e-06, Sum P(6) = 6.4e-06
Identities = 36/135 (26%), Positives = 66/135 (48%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L I W + +DEA +++ + + +H+ +TGTP+Q +++L+ LL FL+
Sbjct: 937 LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 996
Query: 377 SPFSISRWWIEVIRDPYENGDVGAMEFTHKF---FKEIMCRSSKVHVSDELQLPPQEECV 433
S F E ++D GD+ E K K +M R K V E L P++E +
Sbjct: 997 SQFPSES---EFLKD---FGDLKTEEQVQKLQAILKPMMLRRLKEDV--EKNLAPKQETI 1048
Query: 434 SWLTFSPIEEHFYQS 448
+ + I++ +Y++
Sbjct: 1049 IEVELTNIQKKYYRA 1063
Score = 63 (27.2 bits), Expect = 6.4e-06, Sum P(6) = 6.4e-06
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ +A
Sbjct: 833 ILADEMGLGKTIQSIA 848
Score = 61 (26.5 bits), Expect = 6.4e-06, Sum P(6) = 6.4e-06
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 489 HAEAAKLLNSLLKLRQACCHPQVGSSG 515
H LLN++++LR+ C HP + ++G
Sbjct: 1078 HTNMPNLLNTMMELRKCCNHPYLINAG 1104
Score = 51 (23.0 bits), Expect = 6.4e-06, Sum P(6) = 6.4e-06
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 995 EDDNDTSVDA--LSPDELASASVTNSS 1019
EDD+D+ +D LSP +S+S ++SS
Sbjct: 2067 EDDSDSELDLSKLSPSSSSSSSSSSSS 2093
Score = 48 (22.0 bits), Expect = 6.4e-06, Sum P(6) = 6.4e-06
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGA 257
G L++ P + W+ E T + T +Y G+
Sbjct: 860 GPFLVIAPLSTITNWEREFNTWTE---MNTIVYHGS 892
Score = 47 (21.6 bits), Expect = 0.00046, Sum P(5) = 0.00046
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 499 LLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNG 554
L KL + SS S +S +E L ++K+ EE+L L M+ +G
Sbjct: 2076 LSKLSPSSSSSSSSSSSSSSTDESEDEKEEKLTADRSRSKLYDEESLLSLTMSQDG 2131
Score = 46 (21.3 bits), Expect = 2.3e-05, Sum P(5) = 2.3e-05
Identities = 17/61 (27%), Positives = 23/61 (37%)
Query: 617 NEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLS---DLSENGF 673
+ H PG + T A + + EE+ D D ED LS D SE F
Sbjct: 2506 HHHHHPGLRATGYPSSPATTTSGTALRLPPLQPEEDEDDED-EDDDDDLSQGYDSSERDF 2564
Query: 674 N 674
+
Sbjct: 2565 S 2565
Score = 43 (20.2 bits), Expect = 6.4e-06, Sum P(6) = 6.4e-06
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 626 EKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDR 677
E AFK+ I K QR +R E +DF G D F+ DR
Sbjct: 1782 EAAFKLKEIA----RREKQQRWTRREQTDFYRVVSTFGVEYDPDTMQFHWDR 1829
Score = 43 (20.2 bits), Expect = 6.4e-06, Sum P(6) = 6.4e-06
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 770 LNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRM 828
L+K+ + R +I+G+ + ++ L RK ++E D K EED+D++
Sbjct: 1278 LDKAVLQSMSGRDGNITGIQQFSKKEIEDL--LRKGAYAAIMEEDDEGSKFCEEDIDQI 1334
>UNIPROTKB|E2QUS7 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:FLAYMED EMBL:AAEX03009852
Ensembl:ENSCAFT00000009065 Uniprot:E2QUS7
Length = 2586
Score = 123 (48.4 bits), Expect = 6.7e-06, Sum P(6) = 6.7e-06
Identities = 36/135 (26%), Positives = 66/135 (48%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L I W + +DEA +++ + + +H+ +TGTP+Q +++L+ LL FL+
Sbjct: 937 LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 996
Query: 377 SPFSISRWWIEVIRDPYENGDVGAMEFTHKF---FKEIMCRSSKVHVSDELQLPPQEECV 433
S F E ++D GD+ E K K +M R K V E L P++E +
Sbjct: 997 SQFPSES---EFLKD---FGDLKTEEQVQKLQAILKPMMLRRLKEDV--EKNLAPKQETI 1048
Query: 434 SWLTFSPIEEHFYQS 448
+ + I++ +Y++
Sbjct: 1049 IEVELTNIQKKYYRA 1063
Score = 63 (27.2 bits), Expect = 6.7e-06, Sum P(6) = 6.7e-06
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ +A
Sbjct: 833 ILADEMGLGKTIQSIA 848
Score = 61 (26.5 bits), Expect = 6.7e-06, Sum P(6) = 6.7e-06
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 489 HAEAAKLLNSLLKLRQACCHPQVGSSG 515
H LLN++++LR+ C HP + ++G
Sbjct: 1078 HTNMPNLLNTMMELRKCCNHPYLINAG 1104
Score = 51 (23.0 bits), Expect = 6.7e-06, Sum P(6) = 6.7e-06
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 995 EDDNDTSVDA--LSPDELASASVTNSS 1019
EDD+D+ +D LSP +S+S ++SS
Sbjct: 2069 EDDSDSELDLSKLSPSSSSSSSSSSSS 2095
Score = 48 (22.0 bits), Expect = 6.7e-06, Sum P(6) = 6.7e-06
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGA 257
G L++ P + W+ E T + T +Y G+
Sbjct: 860 GPFLVIAPLSTITNWEREFNTWTE---MNTIVYHGS 892
Score = 47 (21.6 bits), Expect = 0.00048, Sum P(5) = 0.00048
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 499 LLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNG 554
L KL + SS S +S +E L ++K+ EE+L L M+ +G
Sbjct: 2078 LSKLSPSSSSSSSSSSSSSSTDESEDEKEEKLSADRSRSKLYDEESLLSLTMSQDG 2133
Score = 46 (21.3 bits), Expect = 2.4e-05, Sum P(5) = 2.4e-05
Identities = 17/61 (27%), Positives = 23/61 (37%)
Query: 617 NEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLS---DLSENGF 673
+ H PG + T A + + EE+ D D ED LS D SE F
Sbjct: 2508 HHHHHPGLRATGYPSSPATTTSGTALRLPPLQPEEDEDDED-EDDDDDLSQGYDSSERDF 2566
Query: 674 N 674
+
Sbjct: 2567 S 2567
Score = 43 (20.2 bits), Expect = 6.7e-06, Sum P(6) = 6.7e-06
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 626 EKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDR 677
E AFK+ I K QR +R E +DF G D F+ DR
Sbjct: 1784 EAAFKLKEIA----RREKQQRWTRREQTDFYRVVSTFGVEYDPDTMQFHWDR 1831
Score = 43 (20.2 bits), Expect = 6.7e-06, Sum P(6) = 6.7e-06
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 770 LNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRM 828
L+K+ + R +I+G+ + ++ L RK ++E D K EED+D++
Sbjct: 1278 LDKAVLQSMSGRDGNITGIQQFSKKEIEDL--LRKGAYAAIMEEDDEGSKFCEEDIDQI 1334
>DICTYBASE|DDB_G0286219 [details] [associations]
symbol:DDB_G0286219 "putative TBP-associated factor"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0286219 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 InterPro:IPR021133
PROSITE:PS50077 GO:GO:0003677 EMBL:AAFI02000085 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 OMA:TKQEGAI InterPro:IPR022707 Pfam:PF12054
RefSeq:XP_637789.1 ProteinModelPortal:Q54M42 STRING:Q54M42
PRIDE:Q54M42 EnsemblProtists:DDB0233434 GeneID:8625503
KEGG:ddi:DDB_G0286219 InParanoid:Q54M42 ProtClustDB:CLSZ2430112
Uniprot:Q54M42
Length = 2005
Score = 107 (42.7 bits), Expect = 6.8e-06, Sum P(3) = 6.8e-06
Identities = 47/195 (24%), Positives = 80/195 (41%)
Query: 327 LDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWI 386
LDE ++++ T+ A RL + HR ++GTPIQ + +L+ L FL + +
Sbjct: 1514 LDEGHIIKNAKTKLTQAAKRLQSNHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKLFN 1573
Query: 387 EVI-------RDPY---ENGDVG--AMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVS 434
E+ +DP ++ + G AME H+ + R K V +L PP+
Sbjct: 1574 ELYSKPILASKDPKCSTKDQEAGVLAMEALHRQVLPFLLRRLKEDVLADL--PPKIIQDR 1631
Query: 435 WLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAK 494
+ SP++ Y T +E I K+ + N ++ A
Sbjct: 1632 YCNLSPLQIRLYDYFSRT---QFKETI---KNEVEDENEDADEGGESKKKKGGNGGGATH 1685
Query: 495 LLNSLLKLRQACCHP 509
+ +L LR+ C HP
Sbjct: 1686 IFQALQYLRKLCGHP 1700
Score = 75 (31.5 bits), Expect = 6.8e-06, Sum P(3) = 6.8e-06
Identities = 17/74 (22%), Positives = 36/74 (48%)
Query: 224 TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTY 283
+L++CP ++ W EI + ++K Y G N S S+ ++++ +Y
Sbjct: 1440 SLVICPPSLVGHWFYEIKKFCSDSTMKPMTYMG--NPSERQAQR---SKFKDHNVLIMSY 1494
Query: 284 DVLKEDLSHDSDRH 297
D+++ D+ S+ H
Sbjct: 1495 DIMRNDIDILSEMH 1508
Score = 71 (30.1 bits), Expect = 6.8e-06, Sum P(3) = 6.8e-06
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 75 YTSSYVFGGILADEMGLGKTVELLACIFA 103
+ + Y GIL D+MGLGKT++ + CI A
Sbjct: 1390 FLNKYKLHGILCDDMGLGKTLQTI-CIIA 1417
>UNIPROTKB|F1SDX0 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 KO:K10841 OMA:NGEMQIF GO:GO:0000303
EMBL:CT990602 EMBL:CT990615 RefSeq:XP_003483566.1
Ensembl:ENSSSCT00000011375 GeneID:100738583 KEGG:ssc:100738583
Uniprot:F1SDX0
Length = 1481
Score = 91 (37.1 bits), Expect = 7.1e-06, Sum P(4) = 7.1e-06
Identities = 32/144 (22%), Positives = 59/144 (40%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRF--- 373
++R W + LDE + + AA T + HR ++G+P+Q L +L+ L F
Sbjct: 624 ISRHDWHYVILDEGHKIRNPNAAITLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFP 683
Query: 374 --LKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKF-------FKEIMCRSSKVHVSDEL 424
L + P + ++ + + Y N ++ +K + R K V L
Sbjct: 684 GKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSL 743
Query: 425 QLPPQEECVSWLTFSPIEEHFYQS 448
LP + E V + + + YQ+
Sbjct: 744 SLPDKNEQVLFCRLTDEQHKVYQN 767
Score = 78 (32.5 bits), Expect = 7.1e-06, Sum P(4) = 7.1e-06
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 222 GATLIVCPAPILAQWDAEITRHTR-PGSLKTCIYEGARNSSLSDTSIMDISELVGADIVL 280
G T+IVCP ++ QW E HT P ++E + + + DI+ G I++
Sbjct: 556 GPTIIVCPTTVMHQWVKEF--HTWWPPFRVAILHETGSFTHKKEKLVRDIAHCHG--ILI 611
Query: 281 TTYDVLKEDLSHDSDRHE 298
T+Y ++ + D RH+
Sbjct: 612 TSYSYIRL-MQDDISRHD 628
Score = 75 (31.5 bits), Expect = 7.1e-06, Sum P(4) = 7.1e-06
Identities = 13/18 (72%), Positives = 17/18 (94%)
Query: 82 GGILADEMGLGKTVELLA 99
GGIL DEMGLGKT++++A
Sbjct: 516 GGILGDEMGLGKTIQIIA 533
Score = 50 (22.7 bits), Expect = 7.1e-06, Sum P(4) = 7.1e-06
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSP 523
++ + L+ LR+ C HP + S G ++ + P
Sbjct: 783 QIFSGLVALRKICNHPDLFSGGPKNFKGIP 812
>UNIPROTKB|F1P5V4 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0010216 "maintenance of DNA
methylation" evidence=IEA] [GO:0031508 "centromeric heterochromatin
assembly" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0046651 "lymphocyte
proliferation" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 OMA:ETFYTAI
GO:GO:0006346 GO:GO:0046651 GeneTree:ENSGT00550000075106
EMBL:AADN02027839 EMBL:AADN02027838 IPI:IPI00823178
Ensembl:ENSGALT00000008749 ArrayExpress:F1P5V4 Uniprot:F1P5V4
Length = 839
Score = 117 (46.2 bits), Expect = 7.5e-06, Sum P(3) = 7.5e-06
Identities = 38/141 (26%), Positives = 64/141 (45%)
Query: 317 LTRIFWWRICLDEAQMVES-NAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLK 375
L FW + +DE +++ N E+ R A ++ +TGTP+Q L +L+ LL FL
Sbjct: 342 LQSCFWKYLIVDEGHRIKNMNCRLIRELK-RFNADNKLLLTGTPLQNNLAELWSLLNFLL 400
Query: 376 SSPF----SISRWW-IEVIRDPYEN-----GDVGAMEFTHKFFKEIMCRSSKVHVSDELQ 425
F S W+ I I + E+ + + H+ + R K V+ L+
Sbjct: 401 PDVFDDLKSFESWFDITSITETAEDIIAKEKEQNILHMLHQILTPFLLRRLKSDVA--LE 458
Query: 426 LPPQEECVSWLTFSPIEEHFY 446
+PP+ E V + + +E FY
Sbjct: 459 VPPKREVVVYAPLAKKQETFY 479
Score = 73 (30.8 bits), Expect = 7.5e-06, Sum P(3) = 7.5e-06
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A I
Sbjct: 243 GILADEMGLGKTIQCIATI 261
Score = 50 (22.7 bits), Expect = 7.5e-06, Sum P(3) = 7.5e-06
Identities = 22/91 (24%), Positives = 37/91 (40%)
Query: 446 YQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQA 505
Y +H ++I R ++ ++K S P+ + KL N ++ LR+
Sbjct: 517 YCEEHNGSPDDLEKLINRTQEEVVKERPVVEVSM-----PMDSEVNL-KLQNIMMLLRKC 570
Query: 506 CCHPQVGSSGLRSLQQSPLSMDEILMVLIGK 536
C HP + L Q +DE L+ GK
Sbjct: 571 CNHPYLIEYPLDPATQQ-FKVDEDLVKNSGK 600
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 125 (49.1 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 34/127 (26%), Positives = 60/127 (47%)
Query: 321 FWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
F WR + +DEA +++ + +E+ +R +TGTP+Q L +L+ LL FL F
Sbjct: 299 FNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVF 358
Query: 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ + + GD +E H + + R K V E LPP++E ++ S
Sbjct: 359 NSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADV--EKSLPPKKEVKIYVGLS 416
Query: 440 PIEEHFY 446
++ +Y
Sbjct: 417 KMQREWY 423
Score = 66 (28.3 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ ++ +
Sbjct: 200 GILADEMGLGKTLQTISLL 218
Score = 52 (23.4 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 494 KLLNSLLKLRQACCHP 509
+LLN L++LR+ C HP
Sbjct: 444 RLLNILMQLRKCCNHP 459
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 125 (49.1 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 34/127 (26%), Positives = 60/127 (47%)
Query: 321 FWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
F WR + +DEA +++ + +E+ +R +TGTP+Q L +L+ LL FL F
Sbjct: 299 FNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVF 358
Query: 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ + + GD +E H + + R K V E LPP++E ++ S
Sbjct: 359 NSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADV--EKSLPPKKEVKIYVGLS 416
Query: 440 PIEEHFY 446
++ +Y
Sbjct: 417 KMQREWY 423
Score = 66 (28.3 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ ++ +
Sbjct: 200 GILADEMGLGKTLQTISLL 218
Score = 52 (23.4 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 494 KLLNSLLKLRQACCHP 509
+LLN L++LR+ C HP
Sbjct: 444 RLLNILMQLRKCCNHP 459
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 125 (49.1 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 34/127 (26%), Positives = 60/127 (47%)
Query: 321 FWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
F WR + +DEA +++ + +E+ +R +TGTP+Q L +L+ LL FL F
Sbjct: 300 FNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVF 359
Query: 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ + + GD +E H + + R K V E LPP++E ++ S
Sbjct: 360 NSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADV--EKSLPPKKEVKIYVGLS 417
Query: 440 PIEEHFY 446
++ +Y
Sbjct: 418 KMQREWY 424
Score = 66 (28.3 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ ++ +
Sbjct: 201 GILADEMGLGKTLQTISLL 219
Score = 52 (23.4 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 494 KLLNSLLKLRQACCHP 509
+LLN L++LR+ C HP
Sbjct: 445 RLLNILMQLRKCCNHP 460
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 125 (49.1 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 34/127 (26%), Positives = 60/127 (47%)
Query: 321 FWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
F WR + +DEA +++ + +E+ +R +TGTP+Q L +L+ LL FL F
Sbjct: 300 FNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVF 359
Query: 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ + + GD +E H + + R K V E LPP++E ++ S
Sbjct: 360 NSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADV--EKSLPPKKEVKIYVGLS 417
Query: 440 PIEEHFY 446
++ +Y
Sbjct: 418 KMQREWY 424
Score = 66 (28.3 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ ++ +
Sbjct: 201 GILADEMGLGKTLQTISLL 219
Score = 52 (23.4 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 494 KLLNSLLKLRQACCHP 509
+LLN L++LR+ C HP
Sbjct: 445 RLLNILMQLRKCCNHP 460
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 125 (49.1 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 34/127 (26%), Positives = 60/127 (47%)
Query: 321 FWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
F WR + +DEA +++ + +E+ +R +TGTP+Q L +L+ LL FL F
Sbjct: 300 FNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVF 359
Query: 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ + + GD +E H + + R K V E LPP++E ++ S
Sbjct: 360 NSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADV--EKSLPPKKEVKIYVGLS 417
Query: 440 PIEEHFY 446
++ +Y
Sbjct: 418 KMQREWY 424
Score = 66 (28.3 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ ++ +
Sbjct: 201 GILADEMGLGKTLQTISLL 219
Score = 52 (23.4 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 494 KLLNSLLKLRQACCHP 509
+LLN L++LR+ C HP
Sbjct: 445 RLLNILMQLRKCCNHP 460
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 125 (49.1 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 34/127 (26%), Positives = 60/127 (47%)
Query: 321 FWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
F WR + +DEA +++ + +E+ +R +TGTP+Q L +L+ LL FL F
Sbjct: 300 FNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVF 359
Query: 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ + + GD +E H + + R K V E LPP++E ++ S
Sbjct: 360 NSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADV--EKSLPPKKEVKIYVGLS 417
Query: 440 PIEEHFY 446
++ +Y
Sbjct: 418 KMQREWY 424
Score = 66 (28.3 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ ++ +
Sbjct: 201 GILADEMGLGKTLQTISLL 219
Score = 52 (23.4 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 494 KLLNSLLKLRQACCHP 509
+LLN L++LR+ C HP
Sbjct: 445 RLLNILMQLRKCCNHP 460
>UNIPROTKB|F1RN66 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000015489
Uniprot:F1RN66
Length = 1794
Score = 121 (47.7 bits), Expect = 8.0e-06, Sum P(5) = 8.0e-06
Identities = 34/126 (26%), Positives = 59/126 (46%)
Query: 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
W I +DEA ++++ + + + + HR ITGTP+Q L +L+ LL F+ FS
Sbjct: 602 WAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFS- 660
Query: 382 SRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPI 441
W E + + G HK + + R K V E LP + E + + S +
Sbjct: 661 -SW--EDFEEEHGKGREYGYASLHKELEPFLLRRVKKDV--EKSLPAKVEQILRMEMSAL 715
Query: 442 EEHFYQ 447
++ +Y+
Sbjct: 716 QKQYYK 721
Score = 66 (28.3 bits), Expect = 8.0e-06, Sum P(5) = 8.0e-06
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG---ARNSSLSDTSIMDISELVGADI 278
G L+V P L W EI T + +Y G +RN + + ++ + +I
Sbjct: 525 GPFLLVVPLSTLTSWQREI--QTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNI 582
Query: 279 VLTTYDVLKED 289
+LTTY++L +D
Sbjct: 583 LLTTYEILLKD 593
Score = 61 (26.5 bits), Expect = 8.0e-06, Sum P(5) = 8.0e-06
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ ++
Sbjct: 497 ILADEMGLGKTIQTIS 512
Score = 52 (23.4 bits), Expect = 8.0e-06, Sum P(5) = 8.0e-06
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 603 ILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDENARKCQR-----VSREENSDFTD 657
+LP + NCA ++S N + + ++ E R +R + RE F+D
Sbjct: 1063 MLPRMRNCAKQISFNGSEGRRSRNRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSD 1122
Query: 658 AE 659
AE
Sbjct: 1123 AE 1124
Score = 38 (18.4 bits), Expect = 8.0e-06, Sum P(5) = 8.0e-06
Identities = 35/179 (19%), Positives = 70/179 (39%)
Query: 752 KDFSAELIRKIEEAISGSLNKSRALRTASRYRSISGLTY--HIQSSLDQLEASRKTLLDR 809
K S +L RK + +SG+ R A + +++ + I+S L + + D
Sbjct: 1305 KLLSKDLARKEAQRLSGAGGSKRRKARAKKNKAMKSIKVKEEIKSDSSPLPSEKSDEDDD 1364
Query: 810 LLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQDYEARLFR-LKKSQGD 868
EI K+ + + + +C+ E +E + E R LK+ +
Sbjct: 1365 KDEITSVKHPNKKIKTEGDSEEK-----PEPDVCIKKEPEEKREAKEKENKRELKR---E 1416
Query: 869 IASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGNE-EIKRRDVRETVVVSKSPSE 926
I E+ D+++K+ + +N ++ E +IK + E+ SK S+
Sbjct: 1417 IKEKEDKKDIKEKD---------FKEKRENKVKEAIQKEKDIKEEKLNESKSESKERSK 1466
Score = 38 (18.4 bits), Expect = 6.8e-05, Sum P(4) = 6.8e-05
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 797 DQLEASRKTLLDRLL-EIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQ 853
++L A K + L E + ++P+E D+D + + GP+ V EL F+
Sbjct: 957 EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFK 1014
>UNIPROTKB|E1BYA8 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000303 "response to superoxide" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006290 "pyrimidine dimer
repair" evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA] [GO:0009636 "response to
toxic substance" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:AADN02027759 EMBL:AADN02027760 IPI:IPI00592927
Ensembl:ENSGALT00000010107 Uniprot:E1BYA8
Length = 1498
Score = 94 (38.1 bits), Expect = 8.6e-06, Sum P(5) = 8.6e-06
Identities = 31/139 (22%), Positives = 56/139 (40%)
Query: 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRF-----LKS 376
W + LDE + + AA T + HR ++G+P+Q L +L+ L F L +
Sbjct: 635 WHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLKELWSLFDFVFPGKLGT 694
Query: 377 SPFSISRWWIEVIRDPYENGDVGAMEFTHKF-------FKEIMCRSSKVHVSDELQLPPQ 429
P + ++ + + Y N ++ +K + R K V L LP +
Sbjct: 695 LPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDAINPYLLRRMKADVKMSLSLPDK 754
Query: 430 EECVSWLTFSPIEEHFYQS 448
E V + + + YQ+
Sbjct: 755 NEQVLFCRLTDEQRQVYQN 773
Score = 78 (32.5 bits), Expect = 8.6e-06, Sum P(5) = 8.6e-06
Identities = 23/79 (29%), Positives = 37/79 (46%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGAD-IVL 280
G T+IVCPA ++ QW E HT + I S ++ + I E+ I++
Sbjct: 562 GPTVIVCPATVMHQWVKEF--HTWWPPFRVAILH--ETGSYTNKKVKLIREIASCHGILI 617
Query: 281 TTYDVLK--EDLSHDSDRH 297
T+Y ++ +D H D H
Sbjct: 618 TSYSYIRLMQDNIHSYDWH 636
Score = 75 (31.5 bits), Expect = 8.6e-06, Sum P(5) = 8.6e-06
Identities = 13/18 (72%), Positives = 17/18 (94%)
Query: 82 GGILADEMGLGKTVELLA 99
GGIL DEMGLGKT++++A
Sbjct: 522 GGILGDEMGLGKTIQIIA 539
Score = 49 (22.3 bits), Expect = 8.6e-06, Sum P(5) = 8.6e-06
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSP 523
++ + L+ LR+ C HP + S G + L+ P
Sbjct: 789 QVFSGLVALRKICNHPDLFSGGPKILKCVP 818
Score = 39 (18.8 bits), Expect = 8.6e-06, Sum P(5) = 8.6e-06
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 757 ELIRKIE-----EAISGSLNKSRALRTASRYRSISGLTYHIQSSLDQLEASRK 804
+L RK+E + + G L+ ++ S S LT H +S + +E S +
Sbjct: 1031 QLKRKLERPADDDTLKGGLHLKKSSSPKYSKSSSSHLTRHRANSSEAIETSEE 1083
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 112 (44.5 bits), Expect = 8.8e-06, Sum P(5) = 8.8e-06
Identities = 39/143 (27%), Positives = 64/143 (44%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFL 374
+L +I W + +DE ++++ T++ Y A R +TGTP+Q KL +L+ LL FL
Sbjct: 121 ILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFL 180
Query: 375 KSSPF----SISRWWIEVIRDPYENGDVGAMEFT------HKFFKEIMCRSSKVHVSDEL 424
+ F + +W+ E D+ E HK + + R K V E
Sbjct: 181 LPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEV--EA 238
Query: 425 QLPPQEECVSWLTFSPIEEHFYQ 447
QLP + E V S ++ Y+
Sbjct: 239 QLPEKVEYVIKCDMSALQRVLYR 261
Score = 73 (30.8 bits), Expect = 8.8e-06, Sum P(5) = 8.8e-06
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A I
Sbjct: 27 GILADEMGLGKTIQTIALI 45
Score = 48 (22.0 bits), Expect = 8.8e-06, Sum P(5) = 8.8e-06
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 495 LLNSLLKLRQACCHP 509
L+N++++LR+ C HP
Sbjct: 287 LMNTIMQLRKICNHP 301
Score = 47 (21.6 bits), Expect = 8.8e-06, Sum P(5) = 8.8e-06
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+ P L+ W E + P +K Y+G+ + + + + +++LT
Sbjct: 56 GPFLIIVPLSTLSNWAYEFDKWA-PSVVKVS-YKGSPAARRAFVPQLRSGKF---NVLLT 110
Query: 282 TYDVLKED 289
TY+ + +D
Sbjct: 111 TYEYIIKD 118
Score = 41 (19.5 bits), Expect = 8.8e-06, Sum P(5) = 8.8e-06
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 985 RMATTRLHLKEDDNDTSVDALSPDELASASVTNSSEKF 1022
R A + L+ ++ D D + DE + + E+F
Sbjct: 495 RRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEF 532
>UNIPROTKB|F1NAD2 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0000729 "DNA double-strand
break processing" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035861
"site of double-strand break" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0051304 "chromosome
separation" evidence=IEA] [GO:0070932 "histone H3 deacetylation"
evidence=IEA] [GO:0070933 "histone H4 deacetylation" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000018 GeneTree:ENSGT00630000089890
GO:GO:0051304 OMA:KNQRGIQ EMBL:AADN02016061 EMBL:AADN02016062
EMBL:AADN02016063 EMBL:AADN02016064 EMBL:AADN02016065
EMBL:AADN02016066 EMBL:AADN02016067 IPI:IPI00583150
Ensembl:ENSGALT00000016936 Uniprot:F1NAD2
Length = 963
Score = 120 (47.3 bits), Expect = 9.3e-06, Sum P(3) = 9.3e-06
Identities = 36/126 (28%), Positives = 58/126 (46%)
Query: 328 DEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS-----IS 382
DE M+++ ++ + +R+ AKHR +TGTP+Q L +L LL F+ FS I
Sbjct: 565 DEGHMLKNMSSVRYQQLMRINAKHRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIR 624
Query: 383 RWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDEL--QLPPQEECVSWLTFSP 440
R + + E H K+I+ V DE+ QLPP+++ + S
Sbjct: 625 RMFSSKAKTAEEQSTYEKERIAHA--KQIIKPFILRRVKDEVLKQLPPKKDHIELCAMSE 682
Query: 441 IEEHFY 446
+E Y
Sbjct: 683 KQEQLY 688
Score = 73 (30.8 bits), Expect = 9.3e-06, Sum P(3) = 9.3e-06
Identities = 15/22 (68%), Positives = 19/22 (86%)
Query: 83 GILADEMGLGKTVELLACIFAH 104
GILADEMGLGKT++ +A + AH
Sbjct: 454 GILADEMGLGKTIQAIAFL-AH 474
Score = 48 (22.0 bits), Expect = 9.3e-06, Sum P(3) = 9.3e-06
Identities = 22/76 (28%), Positives = 33/76 (43%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE-LVGADIVL 280
G LIV PA L W E+ P Y G++ + DIS +V ++++
Sbjct: 482 GPHLIVVPASTLDNWIREVNLWC-PELNVLFYYVGSQEDRKHLRA--DISNRVVDFNVIV 538
Query: 281 TTYDVLKEDLSHDSDR 296
TTY+ +S DR
Sbjct: 539 TTYNCA---ISSSDDR 551
>CGD|CAL0005444 [details] [associations]
symbol:SNF2 species:5476 "Candida albicans" [GO:0016514
"SWI/SNF complex" evidence=IPI] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IEA] [GO:0031492 "nucleosomal DNA
binding" evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:1900430 "positive regulation of
filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900442 "positive regulation of filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] [GO:0042766 "nucleosome mobilization" evidence=IEA]
[GO:0005987 "sucrose catabolic process" evidence=IEA] [GO:1900231
"regulation of single-species biofilm formation on inanimate
substrate" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042148 "strand invasion"
evidence=IEA] [GO:0044109 "cellular alcohol catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0031496 "positive regulation of mating type
switching" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IEA] [GO:0036244 "cellular response to
neutral pH" evidence=IMP] [GO:0071216 "cellular response to biotic
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 118 (46.6 bits), Expect = 9.4e-06, Sum P(4) = 9.4e-06
Identities = 55/210 (26%), Positives = 90/210 (42%)
Query: 316 LLTRIFWWRICLDEA-QMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 374
LL RI W + +DE +M +N+ + + ++ +R +TGTP+Q L +L+ LL F+
Sbjct: 896 LLGRIKWVHMIIDEGHRMKNANSKLSETLTQNYHSDYRLILTGTPLQNNLPELWALLNFV 955
Query: 375 KSSPFSISRWWIEVIRDPYEN-GDVGAMEFT-----------HKFFKEIMCRSSKVHVSD 422
F+ + + E P+ N G +E T HK + + R K V
Sbjct: 956 LPKIFNSVKSFDEWFNTPFANTGGQDKIELTEEETLLVIRRLHKVLRPFLLRRLKKDV-- 1013
Query: 423 ELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDAL 482
E LP + E V S ++ YQ Q L+ N+L P + S
Sbjct: 1014 EKDLPNKVEKVVKCKSSALQSKLYQ--------------QMLRYNMLYAGDPANGSV--- 1056
Query: 483 YNPI-ITHAEAAKLLNSLLKLRQACCHPQV 511
P+ I +A N +++L++ C HP V
Sbjct: 1057 --PVTIKNAN-----NQIMQLKKICNHPFV 1079
Score = 68 (29.0 bits), Expect = 9.4e-06, Sum P(4) = 9.4e-06
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ ++ +
Sbjct: 802 GILADEMGLGKTIQTISLL 820
Score = 57 (25.1 bits), Expect = 9.4e-06, Sum P(4) = 9.4e-06
Identities = 22/80 (27%), Positives = 36/80 (45%)
Query: 211 LIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDI 270
L+E P G L++ P + W+ E + P S+K Y+G N +M
Sbjct: 823 LVEVKKIP---GPFLVIVPLSTVTNWNLEFEKWA-P-SIKKITYKGTPNQR----KVMQH 873
Query: 271 SELVGA-DIVLTTYD-VLKE 288
G +VLTT++ V+K+
Sbjct: 874 DIRTGNFQLVLTTFEYVIKD 893
Score = 51 (23.0 bits), Expect = 9.4e-06, Sum P(4) = 9.4e-06
Identities = 25/96 (26%), Positives = 40/96 (41%)
Query: 919 VVSKSPSELEVILG--VIKNYCKTQLGREAISASSKQLHILEAMRKEYANARSLATAQAQ 976
V+ K P L+VI K+Y K RE + + +H++ K Y S+ A
Sbjct: 1553 VLIKHPIALDVIKKRTASKSYSKI---REFL----EDIHLMFTNAKIYNEEGSIVYQDAA 1605
Query: 977 FLRAHDEIRMATTRLHLKEDDNDTSVDALSPDELAS 1012
FL + +L ED+ + +D DE+ S
Sbjct: 1606 FLERLSMDKFKELSANLSEDEINKILDFAEFDEMFS 1641
>UNIPROTKB|Q5AM49 [details] [associations]
symbol:SNF2 "Putative uncharacterized protein SNF2"
species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009405
"pathogenesis" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=IPI] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044182 "filamentous
growth of a population of unicellular organisms" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:1900430 "positive regulation of filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:1900442
"positive regulation of filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 118 (46.6 bits), Expect = 9.4e-06, Sum P(4) = 9.4e-06
Identities = 55/210 (26%), Positives = 90/210 (42%)
Query: 316 LLTRIFWWRICLDEA-QMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 374
LL RI W + +DE +M +N+ + + ++ +R +TGTP+Q L +L+ LL F+
Sbjct: 896 LLGRIKWVHMIIDEGHRMKNANSKLSETLTQNYHSDYRLILTGTPLQNNLPELWALLNFV 955
Query: 375 KSSPFSISRWWIEVIRDPYEN-GDVGAMEFT-----------HKFFKEIMCRSSKVHVSD 422
F+ + + E P+ N G +E T HK + + R K V
Sbjct: 956 LPKIFNSVKSFDEWFNTPFANTGGQDKIELTEEETLLVIRRLHKVLRPFLLRRLKKDV-- 1013
Query: 423 ELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDAL 482
E LP + E V S ++ YQ Q L+ N+L P + S
Sbjct: 1014 EKDLPNKVEKVVKCKSSALQSKLYQ--------------QMLRYNMLYAGDPANGSV--- 1056
Query: 483 YNPI-ITHAEAAKLLNSLLKLRQACCHPQV 511
P+ I +A N +++L++ C HP V
Sbjct: 1057 --PVTIKNAN-----NQIMQLKKICNHPFV 1079
Score = 68 (29.0 bits), Expect = 9.4e-06, Sum P(4) = 9.4e-06
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ ++ +
Sbjct: 802 GILADEMGLGKTIQTISLL 820
Score = 57 (25.1 bits), Expect = 9.4e-06, Sum P(4) = 9.4e-06
Identities = 22/80 (27%), Positives = 36/80 (45%)
Query: 211 LIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDI 270
L+E P G L++ P + W+ E + P S+K Y+G N +M
Sbjct: 823 LVEVKKIP---GPFLVIVPLSTVTNWNLEFEKWA-P-SIKKITYKGTPNQR----KVMQH 873
Query: 271 SELVGA-DIVLTTYD-VLKE 288
G +VLTT++ V+K+
Sbjct: 874 DIRTGNFQLVLTTFEYVIKD 893
Score = 51 (23.0 bits), Expect = 9.4e-06, Sum P(4) = 9.4e-06
Identities = 25/96 (26%), Positives = 40/96 (41%)
Query: 919 VVSKSPSELEVILG--VIKNYCKTQLGREAISASSKQLHILEAMRKEYANARSLATAQAQ 976
V+ K P L+VI K+Y K RE + + +H++ K Y S+ A
Sbjct: 1553 VLIKHPIALDVIKKRTASKSYSKI---REFL----EDIHLMFTNAKIYNEEGSIVYQDAA 1605
Query: 977 FLRAHDEIRMATTRLHLKEDDNDTSVDALSPDELAS 1012
FL + +L ED+ + +D DE+ S
Sbjct: 1606 FLERLSMDKFKELSANLSEDEINKILDFAEFDEMFS 1641
>UNIPROTKB|J9PA15 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
Pfam:PF00176 GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:AAEX03004381 EMBL:AAEX03004385 EMBL:AAEX03004386
EMBL:AAEX03004382 EMBL:AAEX03004383 EMBL:AAEX03004384
EMBL:AAEX03004387 EMBL:AAEX03004388 Ensembl:ENSCAFT00000048702
Uniprot:J9PA15
Length = 1555
Score = 120 (47.3 bits), Expect = 1.0e-05, Sum P(4) = 1.0e-05
Identities = 36/119 (30%), Positives = 57/119 (47%)
Query: 323 WR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
WR + LDEAQ +++ + + L ++ R +TGTP+Q L +L+ L+ FL F
Sbjct: 746 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 805
Query: 382 SRWWIEVIRDPYENGDVGAMEFT-------HKFFKEIMCRSSKVHVSDELQLPPQEECV 433
R + E +P G+ E+ HK + + R KV V E Q+P + E V
Sbjct: 806 HREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLRRVKVDV--EKQMPKKYEHV 862
Score = 72 (30.4 bits), Expect = 1.0e-05, Sum P(4) = 1.0e-05
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 83 GILADEMGLGKTVELLACIFAH 104
GILADEMGLGKT++ ++ + AH
Sbjct: 645 GILADEMGLGKTIQTIS-LLAH 665
Score = 54 (24.1 bits), Expect = 1.0e-05, Sum P(4) = 1.0e-05
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGAR 258
G LI+ P ++ W+ E+ R P S K Y GA+
Sbjct: 674 GPHLIIVPTSVMLNWEMELKRWC-P-SFKILTYYGAQ 708
Score = 46 (21.3 bits), Expect = 1.0e-05, Sum P(4) = 1.0e-05
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 495 LLNSLLKLRQACCHPQV 511
++N L++LR+ C HP +
Sbjct: 896 VINILMQLRKVCNHPNL 912
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 132 (51.5 bits), Expect = 1.0e-05, Sum P(4) = 1.0e-05
Identities = 35/133 (26%), Positives = 64/133 (48%)
Query: 315 TLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 374
T+L I W + +DEA ++++ + + + + HR ITGTP+Q L +L+ LL F+
Sbjct: 606 TVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFI 665
Query: 375 KSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVS 434
F +W E + + G + HK + + R K V E LP + E +
Sbjct: 666 MPEKFE---FW-EDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDV--EKSLPAKVEQIL 719
Query: 435 WLTFSPIEEHFYQ 447
+ S +++ +Y+
Sbjct: 720 RVEMSALQKQYYK 732
Score = 61 (26.5 bits), Expect = 1.0e-05, Sum P(4) = 1.0e-05
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ ++
Sbjct: 508 ILADEMGLGKTIQTIS 523
Score = 53 (23.7 bits), Expect = 1.0e-05, Sum P(4) = 1.0e-05
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG---ARNSSLSDTSIMDISELVGADI 278
G LIV P L W E P + +Y G +RN+ I ++ + +
Sbjct: 536 GPFLIVVPLSTLTSWQREFEIWA-P-EINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 593
Query: 279 VLTTYDVLKED 289
++TTY++L +D
Sbjct: 594 LITTYEILLKD 604
Score = 43 (20.2 bits), Expect = 0.00054, Sum P(4) = 0.00054
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 185 KKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPV 219
K+ TR++ N+ ++ + D+LIE T V
Sbjct: 218 KRQTRRRAAKNVSYKEDDDFETDSDDLIEMTGEGV 252
Score = 38 (18.4 bits), Expect = 1.0e-05, Sum P(4) = 1.0e-05
Identities = 23/103 (22%), Positives = 45/103 (43%)
Query: 488 THAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALR- 546
T + LN +++L++ C H + + +++ EIL+ LI + G+ L
Sbjct: 746 TRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENG---QEILLSLI---RSSGKLILLD 799
Query: 547 KLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLD 589
KL+ L LI + + + + E + + +H RLD
Sbjct: 800 KLLTRLRERGNRVLIFSQMVRMLDILAEYLTI--KHYPFQRLD 840
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 126 (49.4 bits), Expect = 1.2e-05, Sum P(4) = 1.2e-05
Identities = 33/132 (25%), Positives = 67/132 (50%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLK 375
+L++I W + +DEA ++++ A L K++ ITGTP+Q +++L+ LL FL
Sbjct: 748 VLSKIKWIYLMVDEAHRLKNSEAQLYTALLEFSTKNKLLITGTPLQNSVEELWALLHFLD 807
Query: 376 SSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSW 435
F ++E ++ + + + H + + R +V E LPP+ E +
Sbjct: 808 PGKFKNKDEFVENYKN-LSSFNESELANLHLELRPHILR--RVIKDVEKSLPPKIERILR 864
Query: 436 LTFSPIEEHFYQ 447
+ SP+++ +Y+
Sbjct: 865 VEMSPLQKQYYK 876
Score = 63 (27.2 bits), Expect = 1.2e-05, Sum P(4) = 1.2e-05
Identities = 25/73 (34%), Positives = 33/73 (45%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADI-- 278
G L+V P LA W E R PG + +Y G R S +E VG I
Sbjct: 675 GPFLVVVPLSTLANWAKEF-RKWLPG-MNIIVYVGTRASREVCQQYEFYNEKKVGRPIKF 732
Query: 279 --VLTTYDVLKED 289
+LTTY+V+ +D
Sbjct: 733 NALLTTYEVVLKD 745
Score = 61 (26.5 bits), Expect = 1.2e-05, Sum P(4) = 1.2e-05
Identities = 12/18 (66%), Positives = 16/18 (88%)
Query: 84 ILADEMGLGKTVELLACI 101
ILADEMGLGKTV+ ++ +
Sbjct: 647 ILADEMGLGKTVQSVSML 664
Score = 43 (20.2 bits), Expect = 1.2e-05, Sum P(4) = 1.2e-05
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 495 LLNSLLKLRQACCHP 509
LLN +++L++ C HP
Sbjct: 897 LLNIVVELKKCCNHP 911
Score = 40 (19.1 bits), Expect = 2.3e-05, Sum P(4) = 2.3e-05
Identities = 21/82 (25%), Positives = 34/82 (41%)
Query: 734 EKQYSAWWLEALHHA--EGNKDFSAELIRKIEEAISGSLNKSRALRTASRYRSISGLTYH 791
+KQY W LE H +G + L+ + E + N +A G +
Sbjct: 871 QKQYYKWILERNFHDLNKGVRGNQVSLLNIVVE-LKKCCNHPFLFESADH--GYGG-DIN 926
Query: 792 IQSSLDQ--LEASRKTLLDRLL 811
S LD+ L + + +LD+LL
Sbjct: 927 DNSKLDKIILSSGKLVILDKLL 948
>UNIPROTKB|F6XTU7 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AAEX03026896
Ensembl:ENSCAFT00000029649 Uniprot:F6XTU7
Length = 1075
Score = 131 (51.2 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 35/127 (27%), Positives = 61/127 (48%)
Query: 321 FWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
F WR + +DEA +++ + +E+ + +R +TGTP+Q L +L+ LL FL F
Sbjct: 303 FHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVF 362
Query: 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ + + GD +E H K + R K V E LPP++E +L S
Sbjct: 363 NSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDV--EKSLPPKKEIKVYLGLS 420
Query: 440 PIEEHFY 446
++ ++
Sbjct: 421 KMQREWF 427
Score = 69 (29.3 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A +
Sbjct: 204 GILADEMGLGKTLQTIALL 222
Score = 41 (19.5 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 594 IHLHHNLTEILPMVANCATELSQN 617
+H+++ I+ M+ C TE+ Q+
Sbjct: 481 VHINYCSKGIISMLDYCKTEIEQH 504
>MGI|MGI:1915022 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0002039 "p53 binding" evidence=IPI] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=ISO;IDA] [GO:0003678 "DNA helicase activity" evidence=ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=ISO] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISO] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0030178 "negative regulation of Wnt receptor
signaling pathway" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0035064 "methylated histone residue binding"
evidence=ISO] [GO:0042393 "histone binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP;IDA] [GO:0043234 "protein complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0045945 "positive regulation of transcription
from RNA polymerase III promoter" evidence=ISO] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=ISO]
[GO:0070016 "armadillo repeat domain binding" evidence=ISO]
[GO:0071339 "MLL1 complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 MGI:MGI:1915022 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 GO:GO:0008094
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
OMA:FLAYMED EMBL:DQ190419 EMBL:AY863219 EMBL:AK129393 EMBL:AK160299
IPI:IPI00858099 IPI:IPI00923681 RefSeq:NP_963999.2
UniGene:Mm.289934 ProteinModelPortal:Q09XV5 SMR:Q09XV5
IntAct:Q09XV5 STRING:Q09XV5 PhosphoSite:Q09XV5 PaxDb:Q09XV5
PRIDE:Q09XV5 Ensembl:ENSMUST00000089752 GeneID:67772 KEGG:mmu:67772
UCSC:uc007tot.1 UCSC:uc007tov.1 InParanoid:Q09XV5 ChiTaRS:CHD8
NextBio:325525 Bgee:Q09XV5 Genevestigator:Q09XV5 Uniprot:Q09XV5
Length = 2582
Score = 123 (48.4 bits), Expect = 1.3e-05, Sum P(6) = 1.3e-05
Identities = 36/135 (26%), Positives = 66/135 (48%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L I W + +DEA +++ + + +H+ +TGTP+Q +++L+ LL FL+
Sbjct: 939 LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 998
Query: 377 SPFSISRWWIEVIRDPYENGDVGAMEFTHKF---FKEIMCRSSKVHVSDELQLPPQEECV 433
S F E ++D GD+ E K K +M R K V E L P++E +
Sbjct: 999 SQFPSES---EFLKD---FGDLKTEEQVQKLQAILKPMMLRRLKEDV--EKNLAPKQETI 1050
Query: 434 SWLTFSPIEEHFYQS 448
+ + I++ +Y++
Sbjct: 1051 IEVELTNIQKKYYRA 1065
Score = 63 (27.2 bits), Expect = 1.3e-05, Sum P(6) = 1.3e-05
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ +A
Sbjct: 835 ILADEMGLGKTIQSIA 850
Score = 57 (25.1 bits), Expect = 1.3e-05, Sum P(6) = 1.3e-05
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 489 HAEAAKLLNSLLKLRQACCHP 509
H LLN++++LR+ C HP
Sbjct: 1080 HTNMPNLLNTMMELRKCCNHP 1100
Score = 51 (23.0 bits), Expect = 1.3e-05, Sum P(6) = 1.3e-05
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 995 EDDNDTSVDA--LSPDELASASVTNSS 1019
EDD+D+ +D LSP +S+S ++SS
Sbjct: 2067 EDDSDSELDLSKLSPSSSSSSSSSSSS 2093
Score = 48 (22.0 bits), Expect = 1.3e-05, Sum P(6) = 1.3e-05
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGA 257
G L++ P + W+ E T + T +Y G+
Sbjct: 862 GPFLVIAPLSTITNWEREFNTWTE---MNTIVYHGS 894
Score = 44 (20.5 bits), Expect = 1.3e-05, Sum P(6) = 1.3e-05
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 626 EKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDR 677
E AFK+ I K QR +R E +DF G D F+ DR
Sbjct: 1783 EAAFKLKEIA----RREKQQRWTRREQTDFYRVVSTFGVEYDPDNMQFHWDR 1830
Score = 43 (20.2 bits), Expect = 1.5e-05, Sum P(6) = 1.5e-05
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 770 LNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRM 828
L+K+ + R +I+G+ + ++ L RK ++E D K EED+D++
Sbjct: 1279 LDKAVLQSMSGRDGNITGIQQFSKKEIEDL--LRKGAYAAIMEEDDEGSKFCEEDIDQI 1335
Score = 40 (19.1 bits), Expect = 0.00020, Sum P(5) = 0.00020
Identities = 13/59 (22%), Positives = 21/59 (35%)
Query: 617 NEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPS-GHLSDLSENGFN 674
+ H PG + T A + + E++ + D ED D SE F+
Sbjct: 2505 HHHHHPGLRTTGYPSSPATTTSGTALRLPTLQPEDDDEEEDEEDDDLSQGYDSSERDFS 2563
>UNIPROTKB|Q03468 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0007256 "activation of JNKK activity" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010224 "response to UV-B" evidence=IEA] [GO:0010332 "response
to gamma radiation" evidence=IEA] [GO:0045494 "photoreceptor cell
maintenance" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0008023 "transcription
elongation factor complex" evidence=IDA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0009411 "response to UV"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006979
"response to oxidative stress" evidence=IDA] [GO:0006284
"base-excision repair" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0006979
GO:GO:0005730 GO:GO:0032403 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 Orphanet:279 GO:GO:0045494
GO:GO:0010332 GO:GO:0006366 GO:GO:0004386 GO:GO:0010165
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 EMBL:CH471187 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 Orphanet:1466 EMBL:L04791 EMBL:AY204752 EMBL:AL138760
IPI:IPI00414779 PIR:A44224 RefSeq:NP_000115.1 UniGene:Hs.654449
ProteinModelPortal:Q03468 SMR:Q03468 DIP:DIP-193N IntAct:Q03468
MINT:MINT-1193928 STRING:Q03468 PhosphoSite:Q03468 DMDM:416959
PaxDb:Q03468 PRIDE:Q03468 Ensembl:ENST00000355832 GeneID:2074
KEGG:hsa:2074 UCSC:uc001jhr.4 CTD:2074 GeneCards:GC10M050663
HGNC:HGNC:3438 MIM:133540 MIM:214150 MIM:278800 MIM:600630
MIM:609413 MIM:613761 neXtProt:NX_Q03468 Orphanet:90321
Orphanet:90322 Orphanet:90324 Orphanet:1569 Orphanet:178338
PharmGKB:PA27852 HOGENOM:HOG000170952 HOVERGEN:HBG051502
InParanoid:Q03468 KO:K10841 OMA:NGEMQIF OrthoDB:EOG476JZF
PhylomeDB:Q03468 ChiTaRS:ERCC6 GenomeRNAi:2074 NextBio:8437
ArrayExpress:Q03468 Bgee:Q03468 CleanEx:HS_ERCC6
Genevestigator:Q03468 GermOnline:ENSG00000032514 GO:GO:0000303
Uniprot:Q03468
Length = 1493
Score = 94 (38.1 bits), Expect = 1.3e-05, Sum P(5) = 1.3e-05
Identities = 32/144 (22%), Positives = 59/144 (40%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRF--- 373
++R W + LDE + + AA T + HR ++G+P+Q L +L+ L F
Sbjct: 635 ISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFP 694
Query: 374 --LKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKF-------FKEIMCRSSKVHVSDEL 424
L + P + ++ + + Y N ++ +K + R K V L
Sbjct: 695 GKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSL 754
Query: 425 QLPPQEECVSWLTFSPIEEHFYQS 448
LP + E V + + + YQ+
Sbjct: 755 SLPDKNEQVLFCRLTDEQHKVYQN 778
Score = 75 (31.5 bits), Expect = 1.3e-05, Sum P(5) = 1.3e-05
Identities = 13/18 (72%), Positives = 17/18 (94%)
Query: 82 GGILADEMGLGKTVELLA 99
GGIL DEMGLGKT++++A
Sbjct: 527 GGILGDEMGLGKTIQIIA 544
Score = 72 (30.4 bits), Expect = 1.3e-05, Sum P(5) = 1.3e-05
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 222 GATLIVCPAPILAQWDAEITRHTR-PGSLKTCIYEGARNSSLSDTSIMDISELVGADIVL 280
G T+IVCP ++ QW E HT P ++E + + I D++ G I++
Sbjct: 567 GPTVIVCPTTVMHQWVKEF--HTWWPPFRVAILHETGSYTHKKEKLIRDVAHCHG--ILI 622
Query: 281 TTYD---VLKEDLS 291
T+Y ++++D+S
Sbjct: 623 TSYSYIRLMQDDIS 636
Score = 55 (24.4 bits), Expect = 1.3e-05, Sum P(5) = 1.3e-05
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSP 523
++ + L+ LR+ C HP + S G ++L+ P
Sbjct: 794 QIFSGLIALRKICNHPDLFSGGPKNLKGLP 823
Score = 37 (18.1 bits), Expect = 1.3e-05, Sum P(5) = 1.3e-05
Identities = 19/77 (24%), Positives = 31/77 (40%)
Query: 790 YHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELD 849
Y Q S ++ EA ++ D +LE + K M+H I G + V E +
Sbjct: 1231 YQKQDSENKSEAKEQSNDDYVLE---KLFKKSVGVHSVMKHDAIMDGASPDYVLVEAEAN 1287
Query: 850 ESFQDYEARLFRLKKSQ 866
QD + RL + +
Sbjct: 1288 RVAQD-ALKALRLSRQR 1303
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 134 (52.2 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
Identities = 38/132 (28%), Positives = 62/132 (46%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLK 375
+L I W + +DEA ++++ + + + + HR ITGTP+Q L +L+ LL FL
Sbjct: 610 VLGNINWAFLGVDEAHRLKNDDSLLYKTLIDFRSNHRLLITGTPLQNSLKELWSLLHFLM 669
Query: 376 SSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSW 435
S F W E D + G + HK + + R K V E LP + E +
Sbjct: 670 SDKFE--SW--EDFEDEHGKGRDNGYQSLHKVLEPFLLRRVKKDV--EKSLPAKVEQILR 723
Query: 436 LTFSPIEEHFYQ 447
+ S ++ FY+
Sbjct: 724 VDMSAQQKQFYK 735
Score = 61 (26.5 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ ++
Sbjct: 511 ILADEMGLGKTIQTIS 526
Score = 53 (23.7 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
Identities = 18/71 (25%), Positives = 32/71 (45%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNS--SLSDTS-IMDISELVGADI 278
G ++V P L W E T + +Y G S ++ D I ++ + +
Sbjct: 539 GPFIVVVPLSTLTSWQREFD--TWAPDMNVVVYLGDVTSRKTIRDYEWINPQTKRIKFNA 596
Query: 279 VLTTYDVLKED 289
+LTTY++L +D
Sbjct: 597 LLTTYEILLKD 607
Score = 45 (20.9 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 450 HETCVGYAREVIQRLKDNILKRNVPG 475
H +CV +E + LK+N ++ PG
Sbjct: 1181 HNSCVTAVQEHEEHLKENPVEAKGPG 1206
Score = 44 (20.5 bits), Expect = 4.2e-05, Sum P(5) = 4.2e-05
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 543 EALRKLVMALNGLAGIA----LIEKNLSQAVSL----YKEAMAVVEEHSEDFRLDPL 591
+A +K L L IA L+EK+++ L + + V+EH E + +P+
Sbjct: 1144 KAYKKFGAPLERLEAIARDSELVEKSIADLKRLGELVHNSCVTAVQEHEEHLKENPV 1200
Score = 38 (18.4 bits), Expect = 4.2e-05, Sum P(5) = 4.2e-05
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 488 THAEAAKLLNSLLKLRQACCH 508
T ++ LN +++L++ C H
Sbjct: 749 TRGSSSGFLNIVMELKKCCNH 769
Score = 37 (18.1 bits), Expect = 0.00019, Sum P(5) = 0.00019
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 915 RETVVVSKSPSELEVILGVIKNYCKT 940
R++ +V KS ++L+ + ++ N C T
Sbjct: 1161 RDSELVEKSIADLKRLGELVHNSCVT 1186
>TAIR|locus:2173644 [details] [associations]
symbol:CHR1 "chromatin remodeling 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006349
"regulation of gene expression by genetic imprinting" evidence=IMP]
[GO:0044030 "regulation of DNA methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000786 "nucleosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0090241 "negative regulation of
histone H4 acetylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0009294 "DNA mediated transformation"
evidence=IMP] [GO:0032197 "transposition, RNA-mediated"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP;RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0004003 GO:GO:0006349 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009294
EMBL:AB018119 GO:GO:0000786 GO:GO:0051574 GO:GO:0044030
GO:GO:0090241 GO:GO:0032197 EMBL:AF143940 EMBL:AY099638
EMBL:BT002161 EMBL:AY699010 EMBL:AY699011 IPI:IPI00524705
RefSeq:NP_201476.1 UniGene:At.28851 ProteinModelPortal:Q9XFH4
SMR:Q9XFH4 STRING:Q9XFH4 PaxDb:Q9XFH4 PRIDE:Q9XFH4
EnsemblPlants:AT5G66750.1 GeneID:836808 KEGG:ath:AT5G66750
TAIR:At5g66750 HOGENOM:HOG000172362 InParanoid:Q9XFH4 OMA:ETFYTAI
PhylomeDB:Q9XFH4 ProtClustDB:CLSN2686877 Genevestigator:Q9XFH4
GO:GO:0006344 GO:GO:0006346 Uniprot:Q9XFH4
Length = 764
Score = 93 (37.8 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 29/137 (21%), Positives = 57/137 (41%)
Query: 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS- 380
W + +DE ++++ L ++ +TGTP+Q L +L+ LL F+ F+
Sbjct: 327 WKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFILPDIFTS 386
Query: 381 ---ISRWWI-------EVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQE 430
W+ E ++ E + H + + R K V EL LP ++
Sbjct: 387 HDEFESWFDFSEKNKNEATKEEEEKRRAQVVSKLHGILRPFILRRMKCDV--ELSLPRKK 444
Query: 431 ECVSWLTFSPIEEHFYQ 447
E + + T + ++ F +
Sbjct: 445 EIIMYATMTDHQKKFQE 461
Score = 78 (32.5 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 23/70 (32%), Positives = 34/70 (48%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGAD--IV 279
G L++ P L+ W EI R T P S+ IY G +N + + + VG IV
Sbjct: 251 GPYLVIAPLSTLSNWFNEIARFT-P-SINAIIYHGDKNQR-DELRRKHMPKTVGPKFPIV 307
Query: 280 LTTYDVLKED 289
+T+Y+V D
Sbjct: 308 ITSYEVAMND 317
Score = 66 (28.3 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 83 GILADEMGLGKTVELLACIFAHRK 106
GILAD+MGLGKT++ + + +H K
Sbjct: 223 GILADQMGLGKTIQTIGFL-SHLK 245
>UNIPROTKB|E1C1A9 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AADN02041467 EMBL:AADN02041468 EMBL:AADN02041469
EMBL:AADN02041470 IPI:IPI00575702 Ensembl:ENSGALT00000011260
Uniprot:E1C1A9
Length = 1727
Score = 128 (50.1 bits), Expect = 1.5e-05, Sum P(4) = 1.5e-05
Identities = 34/132 (25%), Positives = 63/132 (47%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLK 375
+L I W + +DEA ++++ + + + + HR ITGTP+Q L +L+ LL F+
Sbjct: 607 VLGSISWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIM 666
Query: 376 SSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSW 435
F +W E + + G + HK + + R K V E LP + E +
Sbjct: 667 PEKFE---FW-EDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDV--EKSLPAKVEQILR 720
Query: 436 LTFSPIEEHFYQ 447
+ S +++ +Y+
Sbjct: 721 VEMSALQKQYYK 732
Score = 61 (26.5 bits), Expect = 1.5e-05, Sum P(4) = 1.5e-05
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ ++
Sbjct: 508 ILADEMGLGKTIQTIS 523
Score = 53 (23.7 bits), Expect = 1.5e-05, Sum P(4) = 1.5e-05
Identities = 19/71 (26%), Positives = 31/71 (43%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG---ARNSSLSDTSIMDISELVGADI 278
G L+V P L W E P + +Y G +RN I S+ + +
Sbjct: 536 GPFLVVVPLSTLTSWQREFEVWA-P-EINVVVYIGDLMSRNMIREYEWIHSQSKRLKFNA 593
Query: 279 VLTTYDVLKED 289
++TTY++L +D
Sbjct: 594 LITTYEILLKD 604
Score = 50 (22.7 bits), Expect = 1.5e-05, Sum P(4) = 1.5e-05
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 450 HETCVGYAREVIQRLKDNILKRNVPG 475
H +CV +E ++LK+N +R PG
Sbjct: 1182 HNSCVSAMQEYEEQLKENPGERKGPG 1207
Score = 42 (19.8 bits), Expect = 0.00094, Sum P(4) = 0.00094
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 185 KKHTRKKDMTNIVVRDGEHICQWCDELIEAT 215
K+ TR++ N+ ++ + D+LIE T
Sbjct: 222 KRQTRRRAAKNVSYKEDDDFETDSDDLIEMT 252
Score = 41 (19.5 bits), Expect = 0.00011, Sum P(4) = 0.00011
Identities = 18/81 (22%), Positives = 39/81 (48%)
Query: 488 THAEAAKLLNSLLKLRQACCH------PQVGS--SGLRSLQQSPLSMDEILMV--LIGKT 537
T + LN +++L++ C H P+ +G+ +LQ S +++++ L+ +
Sbjct: 746 TRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGIETLQSLIRSSGKLILLDKLLTRL 805
Query: 538 KIEGEEAL--RKLVMALNGLA 556
+ G L ++V L+ LA
Sbjct: 806 RDRGNRVLIFSQMVRMLDILA 826
>UNIPROTKB|Q9HCK8 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0070016 "armadillo repeat
domain binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IDA]
[GO:0030178 "negative regulation of Wnt receptor signaling pathway"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003678 "DNA helicase activity" evidence=IMP] [GO:0035064
"methylated histone residue binding" evidence=IDA] [GO:0045945
"positive regulation of transcription from RNA polymerase III
promoter" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IMP] [GO:0043234 "protein complex" evidence=IDA]
[GO:0002039 "p53 binding" evidence=ISS] [GO:0008013 "beta-catenin
binding" evidence=IDA] [GO:0071339 "MLL1 complex" evidence=IDA]
[GO:0042393 "histone binding" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 Pfam:PF00385
GO:GO:0005524 GO:GO:0045892 GO:GO:0043066 GO:GO:0003677
GO:GO:0001701 GO:GO:0045944 GO:GO:0006351 GO:GO:0035064
GO:GO:0008013 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0043044 GO:GO:0071339 GO:GO:0002039 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0008094 HOVERGEN:HBG107676 EMBL:CR749315
EMBL:AL834524 EMBL:AL135744 EMBL:AL161747 EMBL:CB043942
EMBL:AB046784 EMBL:AK131077 EMBL:BC011695 EMBL:BC025964
EMBL:BC036920 EMBL:BC063693 EMBL:BC073903 EMBL:BC098452
IPI:IPI00398992 IPI:IPI00719073 RefSeq:NP_001164100.1
RefSeq:NP_065971.2 UniGene:Hs.530698 PDB:2CKA PDB:2DL6 PDBsum:2CKA
PDBsum:2DL6 ProteinModelPortal:Q9HCK8 SMR:Q9HCK8 IntAct:Q9HCK8
STRING:Q9HCK8 PhosphoSite:Q9HCK8 DMDM:226706293 PaxDb:Q9HCK8
PRIDE:Q9HCK8 Ensembl:ENST00000399982 Ensembl:ENST00000430710
Ensembl:ENST00000557364 GeneID:57680 KEGG:hsa:57680 UCSC:uc001war.2
UCSC:uc001was.2 CTD:57680 GeneCards:GC14M021853 HGNC:HGNC:20153
HPA:HPA000849 MIM:610528 neXtProt:NX_Q9HCK8 PharmGKB:PA134957052
KO:K04494 OMA:FLAYMED EvolutionaryTrace:Q9HCK8 GenomeRNAi:57680
NextBio:64494 ArrayExpress:Q9HCK8 Bgee:Q9HCK8 CleanEx:HS_CHD8
Genevestigator:Q9HCK8 GermOnline:ENSG00000100888 Uniprot:Q9HCK8
Length = 2581
Score = 123 (48.4 bits), Expect = 1.5e-05, Sum P(6) = 1.5e-05
Identities = 36/135 (26%), Positives = 66/135 (48%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L I W + +DEA +++ + + +H+ +TGTP+Q +++L+ LL FL+
Sbjct: 937 LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 996
Query: 377 SPFSISRWWIEVIRDPYENGDVGAMEFTHKF---FKEIMCRSSKVHVSDELQLPPQEECV 433
S F E ++D GD+ E K K +M R K V E L P++E +
Sbjct: 997 SQFPSES---EFLKD---FGDLKTEEQVQKLQAILKPMMLRRLKEDV--EKNLAPKQETI 1048
Query: 434 SWLTFSPIEEHFYQS 448
+ + I++ +Y++
Sbjct: 1049 IEVELTNIQKKYYRA 1063
Score = 63 (27.2 bits), Expect = 1.5e-05, Sum P(6) = 1.5e-05
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ +A
Sbjct: 833 ILADEMGLGKTIQSIA 848
Score = 57 (25.1 bits), Expect = 1.5e-05, Sum P(6) = 1.5e-05
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 489 HAEAAKLLNSLLKLRQACCHP 509
H LLN++++LR+ C HP
Sbjct: 1078 HTNMPNLLNTMMELRKCCNHP 1098
Score = 51 (23.0 bits), Expect = 1.5e-05, Sum P(6) = 1.5e-05
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 995 EDDNDTSVDA--LSPDELASASVTNSS 1019
EDD+D+ +D LSP +S+S ++SS
Sbjct: 2066 EDDSDSELDLSKLSPSSSSSSSSSSSS 2092
Score = 48 (22.0 bits), Expect = 1.5e-05, Sum P(6) = 1.5e-05
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGA 257
G L++ P + W+ E T + T +Y G+
Sbjct: 860 GPFLVIAPLSTITNWEREFNTWTE---MNTIVYHGS 892
Score = 43 (20.2 bits), Expect = 1.5e-05, Sum P(6) = 1.5e-05
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 626 EKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDR 677
E AFK+ I K QR +R E +DF G D F+ DR
Sbjct: 1781 EAAFKLKEIA----RREKQQRWTRREQTDFYRVVSTFGVEYDPDTMQFHWDR 1828
Score = 43 (20.2 bits), Expect = 1.5e-05, Sum P(6) = 1.5e-05
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 770 LNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRM 828
L+K+ + R +I+G+ + ++ L RK ++E D K EED+D++
Sbjct: 1277 LDKAVLQSMSGRDGNITGIQQFSKKEIEDL--LRKGAYAAIMEEDDEGSKFCEEDIDQI 1333
Score = 41 (19.5 bits), Expect = 0.00012, Sum P(6) = 0.00012
Identities = 18/77 (23%), Positives = 36/77 (46%)
Query: 853 QDYEARLFRLKKSQGDIASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEI--K 910
QDYE R+ + ++ + V L+ ++ S + P+ +S+SSS + +
Sbjct: 2039 QDYEMRVSP-SDTTPLVSRSVPPVKLEDEDDSDSELDLSKLSPSSSSSSSSSSSSSSTDE 2097
Query: 911 RRDVRETVVVSKSPSEL 927
D +E + +S S+L
Sbjct: 2098 SEDEKEEKLTDQSRSKL 2114
Score = 41 (19.5 bits), Expect = 0.00016, Sum P(5) = 0.00016
Identities = 16/61 (26%), Positives = 23/61 (37%)
Query: 617 NEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLS---DLSENGF 673
+ H PG + + T + + EE+ D D ED LS D SE F
Sbjct: 2504 HHHHHPGLRAPGYPSSPVTTASGTTLRLPPLQPEEDDD-EDEEDDDD-LSQGYDSSERDF 2561
Query: 674 N 674
+
Sbjct: 2562 S 2562
>UNIPROTKB|Q8TD26 [details] [associations]
symbol:CHD6 "Chromodomain-helicase-DNA-binding protein 6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0003682
"chromatin binding" evidence=NAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0007399 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 CleanEx:HS_CHD5 EMBL:AY034072
EMBL:AL121674 EMBL:AL031669 EMBL:AL031667 EMBL:BC021907
EMBL:BC039860 EMBL:BC040016 EMBL:AF525085 EMBL:AB037756
EMBL:AK026022 IPI:IPI00220289 IPI:IPI00395823 IPI:IPI00513717
RefSeq:NP_115597.3 UniGene:Hs.740645 UniGene:Hs.741381 PDB:2EPB
PDBsum:2EPB ProteinModelPortal:Q8TD26 SMR:Q8TD26 IntAct:Q8TD26
MINT:MINT-1197235 STRING:Q8TD26 PhosphoSite:Q8TD26 DMDM:296439466
PaxDb:Q8TD26 PRIDE:Q8TD26 Ensembl:ENST00000373222
Ensembl:ENST00000373233 Ensembl:ENST00000440647 GeneID:84181
KEGG:hsa:84181 UCSC:uc002xka.1 UCSC:uc002xkc.3 CTD:84181
GeneCards:GC20M040030 H-InvDB:HIX0015824 H-InvDB:HIX0027712
HGNC:HGNC:19057 neXtProt:NX_Q8TD26 PharmGKB:PA134974700
HOVERGEN:HBG081150 InParanoid:Q8TD26 KO:K14436 OMA:CKWATME
OrthoDB:EOG4NP72J PhylomeDB:Q8TD26 ChiTaRS:CHD6
EvolutionaryTrace:Q8TD26 GenomeRNAi:84181 NextBio:73559
ArrayExpress:Q8TD26 Bgee:Q8TD26 CleanEx:HS_CHD6
Genevestigator:Q8TD26 GermOnline:ENSG00000124177 Uniprot:Q8TD26
Length = 2715
Score = 134 (52.2 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 37/133 (27%), Positives = 68/133 (51%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYA-KHRWCITGTPIQRKLDDLYGLLRFLK 375
L +I W + +DEA +++ E L+L A +H+ +TGTP+Q +++L+ LL FL+
Sbjct: 587 LKKIHWSCVIIDEAHRLKNRNCKLLE-GLKLMALEHKVLLTGTPLQNSVEELFSLLNFLE 645
Query: 376 SSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSW 435
S F ++E D V ++ K +M R K V E L P++E +
Sbjct: 646 PSQFPSETAFLEEFGDLKTEEQVKKLQ---SILKPMMLRRLKDDV--EKNLAPKQETIIE 700
Query: 436 LTFSPIEEHFYQS 448
+ + I++ +Y++
Sbjct: 701 VELTNIQKKYYRA 713
Score = 59 (25.8 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 11/13 (84%), Positives = 13/13 (100%)
Query: 84 ILADEMGLGKTVE 96
ILADEMGLGKT++
Sbjct: 483 ILADEMGLGKTIQ 495
Score = 56 (24.8 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 19/89 (21%), Positives = 42/89 (47%)
Query: 793 QSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHC-ELDES 851
Q +D LE K+L +L+ ++ +EE+ + + + G+G+ P +H E +
Sbjct: 1842 QQLIDLLE--NKSLESKLILSQNHSDEEEEEEENEEENLAMAVGMGERPEVLHLTEPTTN 1899
Query: 852 FQDYEARLFRLKKSQGDIASAEEAVDLQK 880
+ + F+ + +G + A + LQ+
Sbjct: 1900 ISREKNQGFQDETKKGSLEVANQTPGLQR 1928
Score = 50 (22.7 bits), Expect = 0.00018, Sum P(6) = 0.00018
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 756 AELIRKIE-EAISGSLNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEID 814
A LI + + ++GSL + A A+R R G H++ +D + +TL +LE+
Sbjct: 2262 AGLIHPVTGQIVNGSLRRDDA---ATRRRR--GRRKHVEGGMDLIFLKEQTLQAGILEVH 2316
Query: 815 Q 815
+
Sbjct: 2317 E 2317
Score = 49 (22.3 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 495 LLNSLLKLRQACCHP 509
L+N++++LR+ C HP
Sbjct: 734 LINTMMELRKCCNHP 748
Score = 45 (20.9 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNS 260
G LI+ P + W+ E T ++ +Y G++ S
Sbjct: 510 GPFLIIAPLSTITNWEREFRTWTEMNAI---VYHGSQIS 545
Score = 39 (18.8 bits), Expect = 0.00066, Sum P(5) = 0.00066
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 880 KKNSSLNRFYWYLSQPNKNSTSSSVGN 906
K + + F W L P K+ + ++ N
Sbjct: 1146 KGDEKIKSFIWELITPTKDGQAQTLQN 1172
Score = 37 (18.1 bits), Expect = 0.00018, Sum P(6) = 0.00018
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 647 VSREENSDFTDAEDPSGHL 665
+SRE+N F D E G L
Sbjct: 1900 ISREKNQGFQD-ETKKGSL 1917
>FB|FBgn0086613 [details] [associations]
symbol:Ino80 "Ino80" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0000975 "regulatory region DNA
binding" evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016887
GO:GO:0006338 GO:GO:0031011 GO:GO:0006310 GO:GO:0005700
GO:GO:0010468 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0000975 KO:K11665
EMBL:AY069786 RefSeq:NP_732413.1 UniGene:Dm.33518
ProteinModelPortal:Q9VDY1 SMR:Q9VDY1 IntAct:Q9VDY1 STRING:Q9VDY1
PaxDb:Q9VDY1 EnsemblMetazoa:FBtr0083771 GeneID:42314
KEGG:dme:Dmel_CG31212 UCSC:CG31212-RA CTD:54617 FlyBase:FBgn0086613
GeneTree:ENSGT00680000100052 InParanoid:Q9VDY1 OMA:NTMAEVR
OrthoDB:EOG4SQVBH PhylomeDB:Q9VDY1 ChiTaRS:INO80 GenomeRNAi:42314
NextBio:828189 Bgee:Q9VDY1 Uniprot:Q9VDY1
Length = 1638
Score = 133 (51.9 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 49/200 (24%), Positives = 93/200 (46%)
Query: 319 RIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 378
RI W + LDEAQ ++S A+ ++ L ++R ++GTPIQ + +L+ LL F+ +
Sbjct: 660 RIKWQYMVLDEAQAIKSAASQRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPTL 719
Query: 379 FS----ISRWWIEVIRDPYEN--G-DVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEE 431
F + W+ + I EN G D + H K M R K V +EL +
Sbjct: 720 FDSHDEFNEWFSKDIESHAENKTGIDEKQISRLHMILKPFMLRRIKKDVENELS-----D 774
Query: 432 CVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAE 491
+ + + P+ + + ++ I R++D + H +S + + +
Sbjct: 775 KIEIMVYCPLT-----IRQKLLYRALKQKI-RIEDLL-------HLTSGSTTTS--SSSS 819
Query: 492 AAKLLNSLLKLRQACCHPQV 511
A+ L+N +++ R+ C HP++
Sbjct: 820 ASNLMNLVMQFRKVCNHPEL 839
Score = 75 (31.5 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 25/76 (32%), Positives = 37/76 (48%)
Query: 83 GILADEMGLGKTVELLA--CIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECI 140
GILADEMGLGKTV+ +A C A + I A + + Q+ R + +V
Sbjct: 556 GILADEMGLGKTVQSIAFLCHIAEHYGVWGPFLVISPASTLHNWQQEMSRFVPDFKVVPY 615
Query: 141 CGAVSESRKYKGLWVQ 156
G+ +E + + W Q
Sbjct: 616 WGSPAERKILRQFWDQ 631
Score = 37 (18.1 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 774 RALRTASRYRSISGLTYHIQSSL-DQLEASRKTLLDRLLEIDQTMEK 819
R+L S G T S+ D +E + L+D LL + +EK
Sbjct: 893 RSLFEDVNVNSCFGFTRLCDLSVGDMVEVTLNGLIDFLLHYRRVLEK 939
>UNIPROTKB|F6XHF3 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
Pfam:PF00176 GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:AAEX03004381 EMBL:AAEX03004385 EMBL:AAEX03004386
Ensembl:ENSCAFT00000026363 EMBL:AAEX03004382 EMBL:AAEX03004383
EMBL:AAEX03004384 EMBL:AAEX03004387 EMBL:AAEX03004388
Uniprot:F6XHF3
Length = 1823
Score = 120 (47.3 bits), Expect = 1.9e-05, Sum P(4) = 1.9e-05
Identities = 36/119 (30%), Positives = 57/119 (47%)
Query: 323 WR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
WR + LDEAQ +++ + + L ++ R +TGTP+Q L +L+ L+ FL F
Sbjct: 746 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 805
Query: 382 SRWWIEVIRDPYENGDVGAMEFT-------HKFFKEIMCRSSKVHVSDELQLPPQEECV 433
R + E +P G+ E+ HK + + R KV V E Q+P + E V
Sbjct: 806 HREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLRRVKVDV--EKQMPKKYEHV 862
Score = 72 (30.4 bits), Expect = 1.9e-05, Sum P(4) = 1.9e-05
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 83 GILADEMGLGKTVELLACIFAH 104
GILADEMGLGKT++ ++ + AH
Sbjct: 645 GILADEMGLGKTIQTIS-LLAH 665
Score = 54 (24.1 bits), Expect = 1.9e-05, Sum P(4) = 1.9e-05
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGAR 258
G LI+ P ++ W+ E+ R P S K Y GA+
Sbjct: 674 GPHLIIVPTSVMLNWEMELKRWC-P-SFKILTYYGAQ 708
Score = 46 (21.3 bits), Expect = 1.9e-05, Sum P(4) = 1.9e-05
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 495 LLNSLLKLRQACCHPQV 511
++N L++LR+ C HP +
Sbjct: 896 VINILMQLRKVCNHPNL 912
>UNIPROTKB|E2R6G6 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
Pfam:PF00176 GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 Ensembl:ENSCAFT00000026363
Uniprot:E2R6G6
Length = 1825
Score = 120 (47.3 bits), Expect = 2.0e-05, Sum P(4) = 2.0e-05
Identities = 36/119 (30%), Positives = 57/119 (47%)
Query: 323 WR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
WR + LDEAQ +++ + + L ++ R +TGTP+Q L +L+ L+ FL F
Sbjct: 746 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 805
Query: 382 SRWWIEVIRDPYENGDVGAMEFT-------HKFFKEIMCRSSKVHVSDELQLPPQEECV 433
R + E +P G+ E+ HK + + R KV V E Q+P + E V
Sbjct: 806 HREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLRRVKVDV--EKQMPKKYEHV 862
Score = 72 (30.4 bits), Expect = 2.0e-05, Sum P(4) = 2.0e-05
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 83 GILADEMGLGKTVELLACIFAH 104
GILADEMGLGKT++ ++ + AH
Sbjct: 645 GILADEMGLGKTIQTIS-LLAH 665
Score = 54 (24.1 bits), Expect = 2.0e-05, Sum P(4) = 2.0e-05
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGAR 258
G LI+ P ++ W+ E+ R P S K Y GA+
Sbjct: 674 GPHLIIVPTSVMLNWEMELKRWC-P-SFKILTYYGAQ 708
Score = 46 (21.3 bits), Expect = 2.0e-05, Sum P(4) = 2.0e-05
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 495 LLNSLLKLRQACCHPQV 511
++N L++LR+ C HP +
Sbjct: 896 VINILMQLRKVCNHPNL 912
>UNIPROTKB|F1NVT7 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00818616
Ensembl:ENSGALT00000040615 ArrayExpress:F1NVT7 Uniprot:F1NVT7
Length = 1257
Score = 128 (50.1 bits), Expect = 2.1e-05, Sum P(5) = 2.1e-05
Identities = 36/133 (27%), Positives = 67/133 (50%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYA-KHRWCITGTPIQRKLDDLYGLLRFLK 375
L +I W + +DEA +++ E L+L A +H+ +TGTP+Q +++L+ LL FL+
Sbjct: 509 LKKIQWRCVVIDEAHRLKNRNCKLLE-GLKLMALEHKVLLTGTPLQNSVEELFSLLNFLE 567
Query: 376 SSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSW 435
F ++E D V ++ K +M R K V E L P++E +
Sbjct: 568 PQQFPSETAFLEEFGDLKTEEQVKKLQ---SILKPMMLRRLKDDV--EKNLAPKQETIIE 622
Query: 436 LTFSPIEEHFYQS 448
+ + I++ +Y++
Sbjct: 623 VELTNIQKKYYRA 635
Score = 59 (25.8 bits), Expect = 2.1e-05, Sum P(5) = 2.1e-05
Identities = 11/13 (84%), Positives = 13/13 (100%)
Query: 84 ILADEMGLGKTVE 96
ILADEMGLGKT++
Sbjct: 405 ILADEMGLGKTIQ 417
Score = 49 (22.3 bits), Expect = 2.1e-05, Sum P(5) = 2.1e-05
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 495 LLNSLLKLRQACCHP 509
L+N++++LR+ C HP
Sbjct: 656 LINTMMELRKCCNHP 670
Score = 47 (21.6 bits), Expect = 2.1e-05, Sum P(5) = 2.1e-05
Identities = 16/77 (20%), Positives = 32/77 (41%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSS---------LSDTSIMDISE 272
G LI+ P + W+ E T ++ +Y G++ S DT +
Sbjct: 432 GPFLIIAPLSTITNWEREFRTWTEMNAI---VYHGSQISRQMIQQYEMVYRDTQGNPLPG 488
Query: 273 LVGADIVLTTYDVLKED 289
+ +V+TT++++ D
Sbjct: 489 IFKFQVVITTFEMILAD 505
Score = 43 (20.2 bits), Expect = 0.00064, Sum P(5) = 0.00064
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 172 SPRGKKRRSTFELKKHTRKKDMT-NIVVRDGEHI 204
S +KRRS ++K+ +D+ +V DGE I
Sbjct: 152 SADSQKRRSGRQVKRRKYNEDLDFKVVDDDGETI 185
Score = 42 (19.8 bits), Expect = 2.1e-05, Sum P(5) = 2.1e-05
Identities = 21/101 (20%), Positives = 39/101 (38%)
Query: 880 KKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDVRETVVVSKSPSELEVILGVIKN--Y 937
K + + F W L P K+ + ++ N V K+ +++ +L IKN +
Sbjct: 1068 KGDEKIKSFIWDLITPTKDGQNQALQNHSGLSAPVPRGRKGKKTKNQM--LLPEIKNADW 1125
Query: 938 CKTQLGREAISASSKQLHILEAMRKEYANARSLATAQAQFL 978
T + S + H+ + K R L +A+ L
Sbjct: 1126 LATCNPEVVLHDDSYKKHLKQHCNKVLLRVRMLYYLKAEVL 1166
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 120 (47.3 bits), Expect = 2.2e-05, Sum P(4) = 2.2e-05
Identities = 40/154 (25%), Positives = 72/154 (46%)
Query: 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
W + +DEA +++ ++ + +TGTPIQ L +LY LL F++ FS
Sbjct: 168 WSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFSK 227
Query: 382 SRW--WIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+I+ +D E A E HK + + R K V+ EL P + E V + S
Sbjct: 228 EEVGDFIQRYQD-IEKESESASEL-HKLLQPFLLRRVKAEVATEL--PKKTEVVIYHGMS 283
Query: 440 PIEEHFYQS-QHETCVGYAREVIQRLK-DNILKR 471
+++ +Y++ + + E +++K NIL +
Sbjct: 284 ALQKKYYKAILMKDLDAFENETAKKVKLQNILSQ 317
Score = 78 (32.5 bits), Expect = 2.2e-05, Sum P(4) = 2.2e-05
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+CP +L+ W E+ R PG L Y G + D+ + ++LT
Sbjct: 96 GPFLILCPLSVLSNWKEEMQRFA-PG-LSCVTYAGDKEERACLQQ--DLKQESRFHVLLT 151
Query: 282 TYDVLKEDLS 291
TY++ +D S
Sbjct: 152 TYEICLKDAS 161
Score = 62 (26.9 bits), Expect = 0.00075, Sum P(4) = 0.00075
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 82 GGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTA-VQVTDDQKVNLRR 131
G IL DEMGLGKT + +A +D+ F+ + V + K ++R
Sbjct: 66 GCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLSVLSNWKEEMQR 116
Score = 42 (19.8 bits), Expect = 2.2e-05, Sum P(4) = 2.2e-05
Identities = 20/87 (22%), Positives = 37/87 (42%)
Query: 490 AEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLV 549
A+ KL N L +LR+ HP + ++ P + + L GK + L KL+
Sbjct: 306 AKKVKLQNILSQLRKCVDHPYL----FDGVEPEPFEVGDHLTEASGKLHL-----LDKLL 356
Query: 550 MALNGLAGIALIEKNLSQAVSLYKEAM 576
L L+ ++Q + + ++ M
Sbjct: 357 AFLYSGGHRVLLFSQMTQMLDILQDYM 383
Score = 38 (18.4 bits), Expect = 2.2e-05, Sum P(4) = 2.2e-05
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 855 YEARLFRLKKSQGDIASAEEAVDLQK 880
+E + + + S+ D S E+ V+LQK
Sbjct: 575 FEGKDYSKEPSKEDRKSFEQLVNLQK 600
Score = 38 (18.4 bits), Expect = 2.2e-05, Sum P(4) = 2.2e-05
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 912 RDVRETVVVSKSPSELEVILGVIKNYCKTQLGREAISASSKQLHILEAMR 961
RD E +V K+ S+L++ +I+ T LG + +A + L + E ++
Sbjct: 472 RDTVEEIVYRKAASKLQLTNMIIEGGHFT-LGAQKPAADA-DLQLSEILK 519
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 112 (44.5 bits), Expect = 2.3e-05, Sum P(4) = 2.3e-05
Identities = 39/143 (27%), Positives = 64/143 (44%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFL 374
+L +I W + +DE ++++ T++ Y A R +TGTP+Q KL +L+ LL FL
Sbjct: 202 ILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFL 261
Query: 375 KSSPF----SISRWWIEVIRDPYENGDVGAMEFT------HKFFKEIMCRSSKVHVSDEL 424
+ F + +W+ E D+ E HK + + R K V E
Sbjct: 262 LPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEV--EA 319
Query: 425 QLPPQEECVSWLTFSPIEEHFYQ 447
QLP + E V S ++ Y+
Sbjct: 320 QLPEKVEYVIKCDMSALQRVLYR 342
Score = 73 (30.8 bits), Expect = 2.3e-05, Sum P(4) = 2.3e-05
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A I
Sbjct: 108 GILADEMGLGKTIQTIALI 126
Score = 48 (22.0 bits), Expect = 2.3e-05, Sum P(4) = 2.3e-05
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 495 LLNSLLKLRQACCHP 509
L+N++++LR+ C HP
Sbjct: 368 LMNTIMQLRKICNHP 382
Score = 47 (21.6 bits), Expect = 2.3e-05, Sum P(4) = 2.3e-05
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+ P L+ W E + P +K Y+G+ + + + + +++LT
Sbjct: 137 GPFLIIVPLSTLSNWAYEFDKWA-PSVVKVS-YKGSPAARRAFVPQLRSGKF---NVLLT 191
Query: 282 TYDVLKED 289
TY+ + +D
Sbjct: 192 TYEYIIKD 199
>RGD|620696 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10116 "Rattus norvegicus" [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0002039 "p53 binding"
evidence=ISO;ISS] [GO:0003677 "DNA binding" evidence=ISO;ISS]
[GO:0003678 "DNA helicase activity" evidence=ISO;ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008013 "beta-catenin binding" evidence=ISO;IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISO;ISS] [GO:0030178
"negative regulation of Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO;ISS]
[GO:0042393 "histone binding" evidence=ISO;ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO;ISS] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO;ISS]
[GO:0043234 "protein complex" evidence=ISO;IDA] [GO:0045892
"negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0045945 "positive regulation of
transcription from RNA polymerase III promoter" evidence=ISO;ISS]
[GO:0060070 "canonical Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0070016 "armadillo repeat domain binding"
evidence=IPI] [GO:0071339 "MLL1 complex" evidence=ISO;ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:620696 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
GO:GO:0002039 EMBL:CH474040 InterPro:IPR023780 PROSITE:PS00598
GO:GO:0008094 HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
EMBL:AF169825 IPI:IPI00201110 IPI:IPI00923717 RefSeq:NP_075222.2
UniGene:Rn.98337 STRING:Q9JIX5 PhosphoSite:Q9JIX5 PRIDE:Q9JIX5
Ensembl:ENSRNOT00000022593 GeneID:65027 KEGG:rno:65027
UCSC:RGD:620696 NextBio:613802 Genevestigator:Q9JIX5 Uniprot:Q9JIX5
Length = 2581
Score = 123 (48.4 bits), Expect = 2.3e-05, Sum P(6) = 2.3e-05
Identities = 36/135 (26%), Positives = 66/135 (48%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L I W + +DEA +++ + + +H+ +TGTP+Q +++L+ LL FL+
Sbjct: 937 LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 996
Query: 377 SPFSISRWWIEVIRDPYENGDVGAMEFTHKF---FKEIMCRSSKVHVSDELQLPPQEECV 433
S F E ++D GD+ E K K +M R K V E L P++E +
Sbjct: 997 SQFPSES---EFLKD---FGDLKTEEQVQKLQAILKPMMLRRLKEDV--EKNLAPKQETI 1048
Query: 434 SWLTFSPIEEHFYQS 448
+ + I++ +Y++
Sbjct: 1049 IEVELTNIQKKYYRA 1063
Score = 63 (27.2 bits), Expect = 2.3e-05, Sum P(6) = 2.3e-05
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ +A
Sbjct: 833 ILADEMGLGKTIQSIA 848
Score = 57 (25.1 bits), Expect = 2.3e-05, Sum P(6) = 2.3e-05
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 489 HAEAAKLLNSLLKLRQACCHP 509
H LLN++++LR+ C HP
Sbjct: 1078 HTNMPNLLNTMMELRKCCNHP 1098
Score = 48 (22.0 bits), Expect = 2.3e-05, Sum P(6) = 2.3e-05
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 995 EDDNDTSVDA--LSPDELASASVTNSS 1019
+DD+D+ +D LSP +S+S ++SS
Sbjct: 2065 DDDSDSELDLSKLSPSSSSSSSSSSSS 2091
Score = 48 (22.0 bits), Expect = 2.3e-05, Sum P(6) = 2.3e-05
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGA 257
G L++ P + W+ E T + T +Y G+
Sbjct: 860 GPFLVIAPLSTITNWEREFNTWTE---MNTIVYHGS 892
Score = 44 (20.5 bits), Expect = 2.3e-05, Sum P(6) = 2.3e-05
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 626 EKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDR 677
E AFK+ I K QR +R E +DF G D F+ DR
Sbjct: 1781 EAAFKLKEIA----RREKQQRWTRREQTDFYRVVSTFGVEYDPDNMQFHWDR 1828
Score = 43 (20.2 bits), Expect = 2.9e-05, Sum P(6) = 2.9e-05
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 770 LNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRM 828
L+K+ + R +I+G+ + ++ L RK ++E D K EED+D++
Sbjct: 1277 LDKAVLQSMSGRDGNITGIQQFSKKEIEDL--LRKGAYAAIMEEDDEGSKFCEEDIDQI 1333
Score = 39 (18.8 bits), Expect = 0.00025, Sum P(5) = 0.00025
Identities = 12/59 (20%), Positives = 21/59 (35%)
Query: 617 NEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPS-GHLSDLSENGFN 674
+ H PG + T A + + E++ + D +D D SE F+
Sbjct: 2504 HHHHHPGLRTTGYPSSPATTTSGTALRLPTLQHEDDDEEEDEDDDDLSQGYDSSERDFS 2562
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 126 (49.4 bits), Expect = 2.6e-05, Sum P(6) = 2.6e-05
Identities = 38/133 (28%), Positives = 61/133 (45%)
Query: 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
W + LDEAQ +++ + ++ L + R +TGTP+Q L +L+ L+ FL FS
Sbjct: 1036 WKYLILDEAQNIKNFKSQRWQLLLNFSTERRLLLTGTPLQNDLMELWSLMHFLMPYVFSS 1095
Query: 382 SRWWIEVIRDPYENGDVGAMEFT-------HKFFKEIMCRSSKVHVSDELQLPPQEECVS 434
R + E +P G ME+ HK + + R K V E Q+P + E V
Sbjct: 1096 HREFKEWFSNPMTGMIEGNMEYNETLITRLHKVIRPFLLRRLKKEV--EKQMPKKYEHVI 1153
Query: 435 WLTFSPIEEHFYQ 447
S + + Y+
Sbjct: 1154 TCRLSNRQRYLYE 1166
Score = 75 (31.5 bits), Expect = 2.6e-05, Sum P(6) = 2.6e-05
Identities = 15/22 (68%), Positives = 19/22 (86%)
Query: 83 GILADEMGLGKTVELLACIFAH 104
GILADEMGLGKT++ +A + AH
Sbjct: 935 GILADEMGLGKTIQTIA-LLAH 955
Score = 50 (22.7 bits), Expect = 2.6e-05, Sum P(6) = 2.6e-05
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGAR 258
G LIV P+ ++ W+ E + PG K Y G++
Sbjct: 964 GPHLIVVPSSVMLNWEMEFKKWC-PG-FKILTYYGSQ 998
Score = 49 (22.3 bits), Expect = 2.6e-05, Sum P(6) = 2.6e-05
Identities = 32/124 (25%), Positives = 52/124 (41%)
Query: 707 GFSVKLSVAQQEFRKSYMQVCN----ALDDREKQYSAWWLEALHHAEGNKDFSAELIRKI 762
G V+LS A E + Q+ A+ E+ +AW E L AE + A+ R+
Sbjct: 1916 GPQVELSKADLEMQNLVKQLSPIERYAMRFVEETGAAWTAEQLRAAEA--ELEAQK-REW 1972
Query: 763 EEAISGSLNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKE 822
E +++K L + LTY + S +Q+ SR T+ + T P++
Sbjct: 1973 EANRLAAMHKEEEL-LKQETEAEEMLTYSRKDSSNQVWISRNTMEQMPMWCPPT--PPQD 2029
Query: 823 EDMD 826
D D
Sbjct: 2030 NDND 2033
Score = 48 (22.0 bits), Expect = 2.6e-05, Sum P(6) = 2.6e-05
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 495 LLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEI 529
++N L++LR+ C HP + + R SP MD I
Sbjct: 1186 VINVLMQLRKVCNHPNMFEA--RPTI-SPFQMDGI 1217
Score = 40 (19.1 bits), Expect = 2.6e-05, Sum P(6) = 2.6e-05
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 653 SDFTDAEDPSGHLSDLSENGFNGDR 677
S T A P+G LS LS + G R
Sbjct: 1364 SSSTTASSPTGALSVLSNSKLLGAR 1388
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 115 (45.5 bits), Expect = 2.7e-05, Sum P(4) = 2.7e-05
Identities = 36/140 (25%), Positives = 66/140 (47%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFL 374
+L++I W + +DE +++ + + + Y +++R +TGTP+Q L +L+ LL F+
Sbjct: 652 ILSKIKWTHMIVDEGHRMKNTQSKLSSTLSQYYTSRYRLILTGTPLQNNLPELWALLNFV 711
Query: 375 KSSPFSISRWWIEVIRDPYEN-GDVGAMEFT-----------HKFFKEIMCRSSKVHVSD 422
+ F + + E P+ N G M+ T HK + + R K V
Sbjct: 712 LPNIFKSVKSFDEWFNTPFANTGGQDRMDLTEEEQLLVIRRLHKVLRPFLLRRLKKDV-- 769
Query: 423 ELQLPPQEECVSWLTFSPIE 442
E LP ++E V FS ++
Sbjct: 770 EKDLPDKQERVIKCRFSALQ 789
Score = 70 (29.7 bits), Expect = 2.7e-05, Sum P(4) = 2.7e-05
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ ++ I
Sbjct: 558 GILADEMGLGKTIQTISLI 576
Score = 56 (24.8 bits), Expect = 2.7e-05, Sum P(4) = 2.7e-05
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G L++ P L W+ E + P S+ +Y+G N+ + ++LT
Sbjct: 587 GPFLVIVPLSTLTNWNLEFEKWA-P-SVSRIVYKGPPNARKQQQQNIRWGNF---QVLLT 641
Query: 282 TYDVLKED 289
TY+ + +D
Sbjct: 642 TYEYIIKD 649
Score = 45 (20.9 bits), Expect = 2.7e-05, Sum P(4) = 2.7e-05
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 495 LLNSLLKLRQACCHPQV 511
L N L++LR+ C HP V
Sbjct: 817 LSNMLMQLRKLCNHPFV 833
>UNIPROTKB|F1N734 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:DAAA02036652 EMBL:DAAA02036653 EMBL:DAAA02036654
EMBL:DAAA02036655 IPI:IPI00924240 Ensembl:ENSBTAT00000061177
ArrayExpress:F1N734 Uniprot:F1N734
Length = 2720
Score = 134 (52.2 bits), Expect = 2.8e-05, Sum P(6) = 2.8e-05
Identities = 37/133 (27%), Positives = 68/133 (51%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYA-KHRWCITGTPIQRKLDDLYGLLRFLK 375
L +I W + +DEA +++ E L+L A +H+ +TGTP+Q +++L+ LL FL+
Sbjct: 586 LKKIHWSCVIIDEAHRLKNRNCKLLE-GLKLMALEHKVLLTGTPLQNSVEELFSLLNFLE 644
Query: 376 SSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSW 435
S F ++E D V ++ K +M R K V E L P++E +
Sbjct: 645 PSQFPSETAFLEEFGDLKTEEQVKKLQ---SILKPMMLRRLKDDV--EKNLAPKQETIIE 699
Query: 436 LTFSPIEEHFYQS 448
+ + I++ +Y++
Sbjct: 700 VELTNIQKKYYRA 712
Score = 59 (25.8 bits), Expect = 2.8e-05, Sum P(6) = 2.8e-05
Identities = 11/13 (84%), Positives = 13/13 (100%)
Query: 84 ILADEMGLGKTVE 96
ILADEMGLGKT++
Sbjct: 482 ILADEMGLGKTIQ 494
Score = 50 (22.7 bits), Expect = 2.8e-05, Sum P(6) = 2.8e-05
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 756 AELIRKIE-EAISGSLNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEID 814
A LI + + ++GSL + A ASR R G H+ +D + +TL +LE+
Sbjct: 2265 AGLIHPVTGQIVNGSLRRDDA---ASRRRR--GRRKHVDGGVDLIFLKEQTLQAGILEVH 2319
Query: 815 Q 815
+
Sbjct: 2320 E 2320
Score = 49 (22.3 bits), Expect = 2.8e-05, Sum P(6) = 2.8e-05
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 495 LLNSLLKLRQACCHP 509
L+N++++LR+ C HP
Sbjct: 733 LINTMMELRKCCNHP 747
Score = 46 (21.3 bits), Expect = 2.8e-05, Sum P(6) = 2.8e-05
Identities = 28/135 (20%), Positives = 49/135 (36%)
Query: 524 LSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHS 583
L+ DE L+ +T G++AL + G G + + + A+S ++ H
Sbjct: 1696 LTHDESLLPGSLETMRYGKKALSQEPGPFQGSTGASTESRQDTAAISAGRDGNCQPRGHE 1755
Query: 584 EDFRLDPLLNIHLHHNLTEI-LPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDENAR 642
DP L + ++ + + LS+ + GCSE + I D N
Sbjct: 1756 AKIASDPSFMETLEAGVAQMNIKNEKHLLISLSKEGEL--GCSEAGPRPERIGQLDPNCF 1813
Query: 643 KCQRVSREENSDFTD 657
+ S F D
Sbjct: 1814 ASPSLDPGNESGFVD 1828
Score = 45 (20.9 bits), Expect = 2.8e-05, Sum P(6) = 2.8e-05
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNS 260
G LI+ P + W+ E T ++ +Y G++ S
Sbjct: 509 GPFLIIAPLSTITNWEREFRTWTEMNAI---VYHGSQIS 544
Score = 43 (20.2 bits), Expect = 0.00077, Sum P(6) = 0.00077
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 172 SPRGKKRRSTFELKKHTRKKDMT-NIVVRDGEHI 204
S +KRRS ++K+ +D+ +V DGE I
Sbjct: 229 SADSQKRRSGRQVKRRKYNEDLDFKVVDDDGETI 262
Score = 40 (19.1 bits), Expect = 0.00054, Sum P(5) = 0.00054
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 886 NRFYWYLSQPNKNSTSSSVGNEEIKRRDVR 915
N+ YW + + S+ + N+E ++R R
Sbjct: 1422 NQSYWVQEEMFRRSSEMELINKEAQKRWTR 1451
Score = 40 (19.1 bits), Expect = 0.00054, Sum P(5) = 0.00054
Identities = 20/101 (19%), Positives = 38/101 (37%)
Query: 880 KKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDVRETVVVSKSPSELEVILGVIKN--Y 937
K + + F W L P K+ + ++ N V K+ ++L +L +KN +
Sbjct: 1145 KGDEKIKSFIWELITPTKDGQAQTLQNHSGLSAPVPRGRKGKKTKNQL--LLPELKNADW 1202
Query: 938 CKTQLGREAISASSKQLHILEAMRKEYANARSLATAQAQFL 978
T + + H+ + K R L +A+ L
Sbjct: 1203 LATCNPEVVLHDDGYKKHLKQHCNKVLLRVRMLYYLKAEIL 1243
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 132 (51.5 bits), Expect = 3.2e-05, Sum P(5) = 3.2e-05
Identities = 35/133 (26%), Positives = 64/133 (48%)
Query: 315 TLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 374
T+L I W + +DEA ++++ + + + + HR ITGTP+Q L +L+ LL F+
Sbjct: 593 TVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFI 652
Query: 375 KSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVS 434
F +W E + + G + HK + + R K V E LP + E +
Sbjct: 653 MPEKFE---FW-EDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDV--EKSLPAKVEQIL 706
Query: 435 WLTFSPIEEHFYQ 447
+ S +++ +Y+
Sbjct: 707 RVEMSALQKQYYK 719
Score = 61 (26.5 bits), Expect = 3.2e-05, Sum P(5) = 3.2e-05
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ ++
Sbjct: 495 ILADEMGLGKTIQTIS 510
Score = 53 (23.7 bits), Expect = 3.2e-05, Sum P(5) = 3.2e-05
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG---ARNSSLSDTSIMDISELVGADI 278
G LIV P L W E P + +Y G +RN+ I ++ + +
Sbjct: 523 GPFLIVVPLSTLTSWQREFEIWA-P-EINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 580
Query: 279 VLTTYDVLKED 289
++TTY++L +D
Sbjct: 581 LITTYEILLKD 591
Score = 47 (21.6 bits), Expect = 3.2e-05, Sum P(5) = 3.2e-05
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 450 HETCVGYAREVIQRLKDNILKRNVPG 475
H +CV +E ++LK+N + PG
Sbjct: 1167 HNSCVSAMQEYEEQLKENASEGKGPG 1192
Score = 44 (20.5 bits), Expect = 4.9e-05, Sum P(5) = 4.9e-05
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 984 IRMATTRLHLKEDDNDTSVDALSPDELASASVTNSSE 1020
IR +T + + D+DT + AS S T+ S+
Sbjct: 1062 IRSSTKKAQTNDSDSDTESKRQAQRSSASESETDESD 1098
Score = 38 (18.4 bits), Expect = 4.9e-05, Sum P(5) = 4.9e-05
Identities = 23/103 (22%), Positives = 45/103 (43%)
Query: 488 THAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALR- 546
T + LN +++L++ C H + + +++ EIL+ LI + G+ L
Sbjct: 733 TRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENG---QEILLSLI---RSSGKLILLD 786
Query: 547 KLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLD 589
KL+ L LI + + + + E + + +H RLD
Sbjct: 787 KLLTRLRERGNRVLIFSQMVRMLDILAEYLTI--KHYPFQRLD 827
Score = 37 (18.1 bits), Expect = 3.2e-05, Sum P(5) = 3.2e-05
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 732 DREKQYSAWWLEALHHAE 749
DR QY W + H+ +
Sbjct: 1652 DRHHQYEQHWYKDHHYGD 1669
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 128 (50.1 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 36/127 (28%), Positives = 60/127 (47%)
Query: 321 FWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
F WR + +DEA +++ + +E+ +R ITGTP+Q L +L+ LL FL F
Sbjct: 248 FNWRYLVIDEAHRIKNEKSKLSEILREFKTANRLLITGTPLQNNLHELWALLNFLLPDVF 307
Query: 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ S + E GD + H K + R K V E +L P++E ++ S
Sbjct: 308 NSSEDFDEWFNTNTCLGDDALITRLHAVLKPFLLRRLKAEV--EKRLKPKKEMKIFVGLS 365
Query: 440 PIEEHFY 446
++ +Y
Sbjct: 366 KMQRDWY 372
Score = 66 (28.3 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ ++ +
Sbjct: 149 GILADEMGLGKTLQTISLL 167
Score = 42 (19.8 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 541 GEEALRKLVMALNGLAGIALI 561
GE +LR M NG AG + +
Sbjct: 644 GESSLRTFTMDTNGEAGTSSV 664
Score = 40 (19.1 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 21/84 (25%), Positives = 36/84 (42%)
Query: 491 EAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVM 550
E +L N L++LR+ HP + G P + D L+ GK I L KL+
Sbjct: 390 EKMRLQNILMQLRKCTNHPYL-FDGAEP--GPPYTTDTHLVYNSGKMAI-----LDKLLP 441
Query: 551 ALNGLAGIALIEKNLSQAVSLYKE 574
L LI +++ + + ++
Sbjct: 442 KLQEQGSRVLIFSQMTRMLDILED 465
>POMBASE|SPBC1826.01c [details] [associations]
symbol:mot1 "TATA-binding protein associated factor
Mot1 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0017025 "TBP-class
protein binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC1826.01c GO:GO:0005524 GO:GO:0005634
GO:GO:0043234 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0006355 GO:GO:0003677 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0016887 GO:GO:0006366 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0017025 EMBL:AB027981 PIR:T39739
RefSeq:NP_596080.2 ProteinModelPortal:O43065 STRING:O43065
EnsemblFungi:SPBC1826.01c.1 GeneID:2539633 KEGG:spo:SPBC1826.01c
OrthoDB:EOG44XNQZ NextBio:20800788 Uniprot:O43065
Length = 1953
Score = 90 (36.7 bits), Expect = 3.5e-05, Sum P(3) = 3.5e-05
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 323 WRIC-LDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 374
W C LDE ++++ A T+ L + HR ++GTPIQ + +L+ L FL
Sbjct: 1488 WNYCVLDEGHVIKNARAKLTKAVKSLRSYHRLILSGTPIQNNVLELWSLFDFL 1540
Score = 86 (35.3 bits), Expect = 3.5e-05, Sum P(3) = 3.5e-05
Identities = 29/101 (28%), Positives = 47/101 (46%)
Query: 191 KDMTNIVVRDGEHICQWCDELIEATDSP-VATGATLIVCPAPILAQWDAEITRHTRPGSL 249
K + I + +H + +L E + SP A +LIVCP+ + W E++ + P L
Sbjct: 1389 KTLQTICIVASDHYNR--QKLFEESGSPKFAHVPSLIVCPSTLAGHWQQELSTYA-P-FL 1444
Query: 250 KTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDL 290
K Y G S M S D+V+T+YD+ + D+
Sbjct: 1445 KVSAYVGPPAERAKIRSKMKKS-----DVVVTSYDICRNDV 1480
Score = 70 (29.7 bits), Expect = 3.5e-05, Sum P(3) = 3.5e-05
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 75 YTSSYVFGGILADEMGLGKTVELLACIFA 103
+ + Y GIL D+MGLGKT++ + CI A
Sbjct: 1371 FLNKYELHGILCDDMGLGKTLQTI-CIVA 1398
>WB|WBGene00007053 [details] [associations]
symbol:chd-7 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR023780 KO:K14437 GeneTree:ENSGT00560000077077
EMBL:FO080504 EMBL:FO080107 RefSeq:NP_491426.2 PaxDb:O61845
EnsemblMetazoa:T04D1.4 GeneID:172079 KEGG:cel:CELE_T04D1.4
UCSC:T04D1.4 CTD:172079 WormBase:T04D1.4 HOGENOM:HOG000213105
InParanoid:O61845 OMA:LLAFRME NextBio:873933 Uniprot:O61845
Length = 2967
Score = 145 (56.1 bits), Expect = 3.5e-05, Sum P(4) = 3.5e-05
Identities = 38/128 (29%), Positives = 64/128 (50%)
Query: 323 WRIC-LDEAQMVES-NAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 380
WR+C +DEA +++ N L +HR +TGTP+Q +D+L+ LL FL F
Sbjct: 1331 WRVCVIDEAHRLKNRNCKLLVNGLLAFRMEHRVLLTGTPLQNNIDELFSLLNFLHPQQFD 1390
Query: 381 ISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSP 440
S ++E + V ++ + K +M R K V E L P+EE + + S
Sbjct: 1391 NSATFLEQFGSCQTDDQVQKLQ---EILKPMMLRRLKEDV--EKSLGPKEETIIEVQLSD 1445
Query: 441 IEEHFYQS 448
+++ FY++
Sbjct: 1446 MQKKFYRA 1453
Score = 61 (26.5 bits), Expect = 3.5e-05, Sum P(4) = 3.5e-05
Identities = 12/15 (80%), Positives = 14/15 (93%)
Query: 84 ILADEMGLGKTVELL 98
ILADEMGLGKTV+ +
Sbjct: 1219 ILADEMGLGKTVQTI 1233
Score = 49 (22.3 bits), Expect = 3.5e-05, Sum P(4) = 3.5e-05
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 492 AAKLLNSLLKLRQACCHP 509
A L+N +++LR+ C HP
Sbjct: 1468 APSLMNVMMELRKCCNHP 1485
Score = 46 (21.3 bits), Expect = 4.6e-05, Sum P(5) = 4.6e-05
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 802 SRKTLLDRLLEIDQTMEKPK 821
S TLL RLLEI T+E K
Sbjct: 2236 SETTLLRRLLEIVATIESGK 2255
Score = 42 (19.8 bits), Expect = 3.5e-05, Sum P(4) = 3.5e-05
Identities = 14/60 (23%), Positives = 31/60 (51%)
Query: 924 PSELEVILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDE 983
PSE ++ +++ + G+ A + ++ ++ K+ + ++A AQAQFLR +
Sbjct: 2235 PSETTLLRRLLEIVATIESGKWCGVADVETVNDSDSEDKK--DMAAVAAAQAQFLRLQQQ 2292
Score = 39 (18.8 bits), Expect = 4.6e-05, Sum P(5) = 4.6e-05
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 897 KNSTSSSVGNEEIKRRDVRETVVVSKSPSELEVILGVIKN 936
K +T S + + RE++ VSK P ++ + V+ N
Sbjct: 2553 KLNTMSKDARVPMIHKQTRESLPVSKRPPIRDLTVFVMSN 2592
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 131 (51.2 bits), Expect = 3.8e-05, Sum P(5) = 3.8e-05
Identities = 35/133 (26%), Positives = 64/133 (48%)
Query: 315 TLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 374
T+L I W + +DEA ++++ + + + + HR ITGTP+Q L +L+ LL F+
Sbjct: 573 TVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFI 632
Query: 375 KSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVS 434
F +W E + + G + HK + + R K V E LP + E +
Sbjct: 633 MPEKFE---FW-EDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDV--EKSLPAKVEQIL 686
Query: 435 WLTFSPIEEHFYQ 447
+ S +++ +Y+
Sbjct: 687 RVEMSALQKQYYK 699
Score = 61 (26.5 bits), Expect = 3.8e-05, Sum P(5) = 3.8e-05
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ ++
Sbjct: 475 ILADEMGLGKTIQTIS 490
Score = 53 (23.7 bits), Expect = 3.8e-05, Sum P(5) = 3.8e-05
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG---ARNSSLSDTSIMDISELVGADI 278
G LIV P L W E P + +Y G +RN+ I ++ + +
Sbjct: 503 GPFLIVVPLSTLTSWQREFEIWA-P-EINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 560
Query: 279 VLTTYDVLKED 289
++TTY++L +D
Sbjct: 561 LITTYEILLKD 571
Score = 47 (21.6 bits), Expect = 3.8e-05, Sum P(5) = 3.8e-05
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 450 HETCVGYAREVIQRLKDNILKRNVPG 475
H +CV +E ++LK+N + PG
Sbjct: 1147 HNSCVSAMQEYEEQLKENASEGKGPG 1172
Score = 44 (20.5 bits), Expect = 7.2e-05, Sum P(5) = 7.2e-05
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 984 IRMATTRLHLKEDDNDTSVDALSPDELASASVTNSSE 1020
IR +T + + D+DT + AS S T+ S+
Sbjct: 1042 IRSSTKKAQTNDSDSDTESKRQAQRSSASESETDDSD 1078
Score = 37 (18.1 bits), Expect = 3.8e-05, Sum P(5) = 3.8e-05
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 732 DREKQYSAWWLEALHHAE 749
DR QY W + H+ +
Sbjct: 1632 DRHHQYEQHWYKDHHYGD 1649
Score = 37 (18.1 bits), Expect = 7.2e-05, Sum P(5) = 7.2e-05
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 488 THAEAAKLLNSLLKLRQACCH 508
T + LN +++L++ C H
Sbjct: 713 TRGSTSGFLNIVMELKKCCNH 733
>SGD|S000006003 [details] [associations]
symbol:MOT1 "Essential protein involved in regulation of
transcription" species:4932 "Saccharomyces cerevisiae" [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045898 "regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000006003 GO:GO:0005739 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0016887 EMBL:BK006949
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:U41849 GO:GO:0000228 GO:GO:0006364
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0042790 GO:GO:0045898 OrthoDB:EOG44XNQZ
EMBL:M83224 PIR:S22775 RefSeq:NP_015243.1 ProteinModelPortal:P32333
SMR:P32333 DIP:DIP-2418N IntAct:P32333 MINT:MINT-623118
STRING:P32333 PaxDb:P32333 PeptideAtlas:P32333 PRIDE:P32333
EnsemblFungi:YPL082C GeneID:856023 KEGG:sce:YPL082C CYGD:YPL082c
GeneTree:ENSGT00630000089754 NextBio:980935 Genevestigator:P32333
GermOnline:YPL082C Uniprot:P32333
Length = 1867
Score = 89 (36.4 bits), Expect = 3.8e-05, Sum P(3) = 3.8e-05
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 224 TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTY 283
+LI+CP + W+ E ++ P LK +Y G L T +S+ ADI++T+Y
Sbjct: 1335 SLIICPPSLTGHWENEFDQYA-P-FLKVVVYAGGPTVRL--TLRPQLSD---ADIIVTSY 1387
Query: 284 DVLKEDLS 291
DV + DL+
Sbjct: 1388 DVARNDLA 1395
Score = 86 (35.3 bits), Expect = 3.8e-05, Sum P(3) = 3.8e-05
Identities = 31/120 (25%), Positives = 50/120 (41%)
Query: 323 WRIC-LDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
+ C LDE +++++ + + + A HR +TGTPIQ + +L+ L FL
Sbjct: 1402 YNYCVLDEGHIIKNSQSKLAKAVKEITANHRLILTGTPIQNNVLELWSLFDFLMPGFLGT 1461
Query: 382 SRWWIEVIRDPY------------ENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQ 429
+ + E P + V A+E HK M R K V +L PP+
Sbjct: 1462 EKMFQERFAKPIAASRNSKTSSKEQEAGVLALEALHKQVLPFMLRRLKEDVLSDL--PPK 1519
Score = 70 (29.7 bits), Expect = 3.8e-05, Sum P(3) = 3.8e-05
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 75 YTSSYVFGGILADEMGLGKTVELLACIFA 103
+ + Y GIL D+MGLGKT++ + CI A
Sbjct: 1285 FLNKYHLHGILCDDMGLGKTLQTI-CIIA 1312
>UNIPROTKB|G4NCX0 [details] [associations]
symbol:MGG_00338 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 PROSITE:PS51194
GO:GO:0005524 EMBL:CM001235 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 RefSeq:XP_003718744.1
EnsemblFungi:MGG_00338T0 GeneID:2674989 KEGG:mgr:MGG_00338
Uniprot:G4NCX0
Length = 1151
Score = 108 (43.1 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 47/163 (28%), Positives = 75/163 (46%)
Query: 213 EATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE 272
E +D + A+L++ P +L QW EIT+HT P L+T + AR T I +
Sbjct: 387 EQSDKLYLSCASLVIVPTNLLEQWKDEITKHT-P-YLRTLVLTKAR----VPTPIPNALS 440
Query: 273 LVGADIVLTTYDVLKEDLSHD-SDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQ 331
L+ DI+L + + + + DRH G V+ + L ++ + RI +DE
Sbjct: 441 LLQYDIILVSMSRFERLIENRIKDRH-GSW----------VLLSPLGQVHFKRIIIDEGH 489
Query: 332 MV-ESNAAAATEMAL---RLYAKHRWCITGTPIQRKLDDLYGL 370
+ S A + + L L RW +TGTP + LYG+
Sbjct: 490 ALGHSTLAKKSNLLLVVEHLQTSARWVVTGTPSK----GLYGV 528
Score = 83 (34.3 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 36/105 (34%), Positives = 48/105 (45%)
Query: 16 YQRRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYSTLFYNPFSGSLSLSPDY 75
YQR AA M QRE LC +D + F++ +G + L
Sbjct: 225 YQREAAASMFQRETQPLQCIDPR--------LCYVVDQHE--DPWFFDCITGEV-LKDGR 273
Query: 76 TSSYVFGGILADEMGLGKTVELLACIFAHRK-PASDDSIFIDTAV 119
+ V GGILA+EMG GKT+ LA I A R+ PA I+ A+
Sbjct: 274 SYEGVSGGILAEEMGSGKTLICLALIAATRQQPAYRPEIYTAPAI 318
>TIGR_CMR|BA_1804 [details] [associations]
symbol:BA_1804 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 Pfam:PF04434 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0008270 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000026038 OMA:NTLNAEM InterPro:IPR013663
Pfam:PF08455 RefSeq:NP_844228.1 RefSeq:YP_018441.1
RefSeq:YP_027937.1 ProteinModelPortal:Q81S67 IntAct:Q81S67
DNASU:1086172 EnsemblBacteria:EBBACT00000012419
EnsemblBacteria:EBBACT00000014433 EnsemblBacteria:EBBACT00000022268
GeneID:1086172 GeneID:2814636 GeneID:2849386 KEGG:ban:BA_1804
KEGG:bar:GBAA_1804 KEGG:bat:BAS1671 ProtClustDB:CLSK916372
BioCyc:BANT260799:GJAJ-1742-MONOMER
BioCyc:BANT261594:GJ7F-1813-MONOMER Uniprot:Q81S67
Length = 1064
Score = 82 (33.9 bits), Expect = 3.8e-05, Sum P(5) = 3.8e-05
Identities = 16/23 (69%), Positives = 20/23 (86%)
Query: 79 YVFGGILADEMGLGKTVELLACI 101
Y FGGILAD+MGLGKT++ +A I
Sbjct: 630 YRFGGILADDMGLGKTLQSIAYI 652
Score = 77 (32.2 bits), Expect = 3.8e-05, Sum P(5) = 3.8e-05
Identities = 36/147 (24%), Positives = 66/147 (44%)
Query: 327 LDEAQMVESNAAAATEMALR-LYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWW 385
LDEAQ + N T A++ + A++R+ +TGTP++ L++L+ + + P
Sbjct: 737 LDEAQAFK-NPTTQTARAVKTIQAEYRFGLTGTPVENSLEELWSIFHVV--FP------- 786
Query: 386 IEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHF 445
E++ E GD+ + K K + R K V EL P + E + P ++
Sbjct: 787 -ELLPGRKEFGDLRREDIA-KRVKPFVLRRLKEDVLKEL--PDKIEHLQSSELLPDQKRL 842
Query: 446 YQSQHETCVGYAREVIQRLKDNILKRN 472
Y + E ++ L + L++N
Sbjct: 843 YAAY---LAKLREETLKHLDKDTLRKN 866
Score = 66 (28.3 bits), Expect = 3.8e-05, Sum P(5) = 3.8e-05
Identities = 17/66 (25%), Positives = 37/66 (56%)
Query: 225 LIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYD 284
L+V P+ ++ W +E+ + P ++ I +G N + + D++E D+V+T+Y
Sbjct: 667 LVVSPSSLVYNWLSELKKFA-P-HIRAVIADG--NQAERRKILKDVAEF---DVVITSYP 719
Query: 285 VLKEDL 290
+L+ D+
Sbjct: 720 LLRRDI 725
Score = 57 (25.1 bits), Expect = 3.8e-05, Sum P(5) = 3.8e-05
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 494 KLLNSLLKLRQACCHP 509
++L L +LRQ CCHP
Sbjct: 869 RILAGLTRLRQICCHP 884
Score = 39 (18.8 bits), Expect = 3.8e-05, Sum P(5) = 3.8e-05
Identities = 8/35 (22%), Positives = 21/35 (60%)
Query: 792 IQSSLDQLEASRKTLLDRLLEI-DQTMEKPKEEDM 825
I+ + +L+ S+K L+ ++E ++ + EE++
Sbjct: 1024 IEEKMHELQESKKNLIAEVIEPGEEKLSSITEEEI 1058
>UNIPROTKB|G3MXX3 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:DAAA02051958 Ensembl:ENSBTAT00000065179
Uniprot:G3MXX3
Length = 1810
Score = 132 (51.5 bits), Expect = 4.2e-05, Sum P(5) = 4.2e-05
Identities = 35/133 (26%), Positives = 64/133 (48%)
Query: 315 TLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 374
T+L I W + +DEA ++++ + + + + HR ITGTP+Q L +L+ LL F+
Sbjct: 586 TVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFI 645
Query: 375 KSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVS 434
F +W E + + G + HK + + R K V E LP + E +
Sbjct: 646 MPEKFE---FW-EDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDV--EKSLPAKVEQIL 699
Query: 435 WLTFSPIEEHFYQ 447
+ S +++ +Y+
Sbjct: 700 RVEMSALQKQYYK 712
Score = 61 (26.5 bits), Expect = 4.2e-05, Sum P(5) = 4.2e-05
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ ++
Sbjct: 488 ILADEMGLGKTIQTIS 503
Score = 53 (23.7 bits), Expect = 4.2e-05, Sum P(5) = 4.2e-05
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG---ARNSSLSDTSIMDISELVGADI 278
G LIV P L W E P + +Y G +RN+ I ++ + +
Sbjct: 516 GPFLIVVPLSTLTSWQREFEIWA-P-EINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 573
Query: 279 VLTTYDVLKED 289
++TTY++L +D
Sbjct: 574 LITTYEILLKD 584
Score = 47 (21.6 bits), Expect = 4.2e-05, Sum P(5) = 4.2e-05
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 450 HETCVGYAREVIQRLKDNILKRNVPG 475
H +CV +E ++LK+N + PG
Sbjct: 1160 HNSCVSAMQEYEEQLKENASEGKGPG 1185
Score = 44 (20.5 bits), Expect = 6.5e-05, Sum P(5) = 6.5e-05
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 984 IRMATTRLHLKEDDNDTSVDALSPDELASASVTNSSE 1020
IR +T + + D+DT + AS S T+ S+
Sbjct: 1055 IRSSTKKAQTNDSDSDTESKRQAQRSSASESETDDSD 1091
Score = 40 (19.1 bits), Expect = 6.4e-05, Sum P(4) = 6.4e-05
Identities = 24/96 (25%), Positives = 41/96 (42%)
Query: 941 QLGREAISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDEIRMATTRLHLKEDDNDT 1000
Q+ R +SA KQ + R A A+ + + FL E++ HL + +
Sbjct: 697 QILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCHLIKPPEEN 756
Query: 1001 SVDALSPDELASASVTNSSEKFISMTLLSQVKGKLR 1036
+ + E+ S+ SS K I LL ++ +LR
Sbjct: 757 ERE--NGQEVL-LSLIRSSGKLI---LLDKLLTRLR 786
Score = 38 (18.4 bits), Expect = 6.5e-05, Sum P(5) = 6.5e-05
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 488 THAEAAKLLNSLLKLRQAC--CH 508
T + LN +++L++ C CH
Sbjct: 726 TRGSTSGFLNIVMELKKCCNHCH 748
Score = 37 (18.1 bits), Expect = 4.2e-05, Sum P(5) = 4.2e-05
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 732 DREKQYSAWWLEALHHAE 749
DR QY W + H+ +
Sbjct: 1642 DRHHQYEQHWYKDHHYGD 1659
>UNIPROTKB|O14647 [details] [associations]
symbol:CHD2 "Chromodomain-helicase-DNA-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 EMBL:CH471101
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
EMBL:AF006514 EMBL:BT007050 EMBL:FJ515838 EMBL:AC013394
EMBL:BC007347 EMBL:CR978407 IPI:IPI00023109 IPI:IPI00815893
RefSeq:NP_001036037.1 RefSeq:NP_001262.3 UniGene:Hs.220864
ProteinModelPortal:O14647 SMR:O14647 IntAct:O14647 STRING:O14647
PhosphoSite:O14647 PaxDb:O14647 PRIDE:O14647 DNASU:1106
Ensembl:ENST00000394196 Ensembl:ENST00000420239
Ensembl:ENST00000557381 GeneID:1106 KEGG:hsa:1106 UCSC:uc002bso.1
UCSC:uc002bsp.3 CTD:1106 GeneCards:GC15P093533 HGNC:HGNC:1917
MIM:602119 neXtProt:NX_O14647 PharmGKB:PA26453 InParanoid:O14647
OMA:AHSWCKN OrthoDB:EOG4QRH36 ChiTaRS:CHD2 GenomeRNAi:1106
NextBio:4584 ArrayExpress:O14647 Bgee:O14647 CleanEx:HS_CHD2
Genevestigator:O14647 GermOnline:ENSG00000173575 Uniprot:O14647
Length = 1828
Score = 132 (51.5 bits), Expect = 4.4e-05, Sum P(5) = 4.4e-05
Identities = 35/133 (26%), Positives = 64/133 (48%)
Query: 315 TLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 374
T+L I W + +DEA ++++ + + + + HR ITGTP+Q L +L+ LL F+
Sbjct: 604 TVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFI 663
Query: 375 KSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVS 434
F +W E + + G + HK + + R K V E LP + E +
Sbjct: 664 MPEKFE---FW-EDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDV--EKSLPAKVEQIL 717
Query: 435 WLTFSPIEEHFYQ 447
+ S +++ +Y+
Sbjct: 718 RVEMSALQKQYYK 730
Score = 61 (26.5 bits), Expect = 4.4e-05, Sum P(5) = 4.4e-05
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ ++
Sbjct: 506 ILADEMGLGKTIQTIS 521
Score = 53 (23.7 bits), Expect = 4.4e-05, Sum P(5) = 4.4e-05
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG---ARNSSLSDTSIMDISELVGADI 278
G LIV P L W E P + +Y G +RN+ I ++ + +
Sbjct: 534 GPFLIVVPLSTLTSWQREFEIWA-P-EINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 591
Query: 279 VLTTYDVLKED 289
++TTY++L +D
Sbjct: 592 LITTYEILLKD 602
Score = 47 (21.6 bits), Expect = 4.4e-05, Sum P(5) = 4.4e-05
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 450 HETCVGYAREVIQRLKDNILKRNVPG 475
H +CV +E ++LK+N + PG
Sbjct: 1178 HNSCVSAMQEYEEQLKENASEGKGPG 1203
Score = 43 (20.2 bits), Expect = 8.5e-05, Sum P(5) = 8.5e-05
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 984 IRMATTRLHLKEDDNDTSVDALSPDELASASVTNSSE 1020
IR +T + + D+DT + AS S T S+
Sbjct: 1073 IRSSTKKAQTNDSDSDTESKRQAQRSSASESETEDSD 1109
Score = 38 (18.4 bits), Expect = 8.5e-05, Sum P(5) = 8.5e-05
Identities = 23/103 (22%), Positives = 45/103 (43%)
Query: 488 THAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALR- 546
T + LN +++L++ C H + + +++ EIL+ LI + G+ L
Sbjct: 744 TRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENG---QEILLSLI---RSSGKLILLD 797
Query: 547 KLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLD 589
KL+ L LI + + + + E + + +H RLD
Sbjct: 798 KLLTRLRERGNRVLIFSQMVRMLDILAEYLTI--KHYPFQRLD 838
Score = 37 (18.1 bits), Expect = 4.4e-05, Sum P(5) = 4.4e-05
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 732 DREKQYSAWWLEALHHAE 749
DR QY W + H+ +
Sbjct: 1660 DRHHQYEQHWYKDHHYGD 1677
>UNIPROTKB|F1SA77 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000002524
Uniprot:F1SA77
Length = 1831
Score = 132 (51.5 bits), Expect = 4.5e-05, Sum P(5) = 4.5e-05
Identities = 35/133 (26%), Positives = 64/133 (48%)
Query: 315 TLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 374
T+L I W + +DEA ++++ + + + + HR ITGTP+Q L +L+ LL F+
Sbjct: 606 TVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFI 665
Query: 375 KSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVS 434
F +W E + + G + HK + + R K V E LP + E +
Sbjct: 666 MPEKFE---FW-EDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDV--EKSLPAKVEQIL 719
Query: 435 WLTFSPIEEHFYQ 447
+ S +++ +Y+
Sbjct: 720 RVEMSALQKQYYK 732
Score = 61 (26.5 bits), Expect = 4.5e-05, Sum P(5) = 4.5e-05
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ ++
Sbjct: 508 ILADEMGLGKTIQTIS 523
Score = 53 (23.7 bits), Expect = 4.5e-05, Sum P(5) = 4.5e-05
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG---ARNSSLSDTSIMDISELVGADI 278
G LIV P L W E P + +Y G +RN+ I ++ + +
Sbjct: 536 GPFLIVVPLSTLTSWQREFEIWA-P-EINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 593
Query: 279 VLTTYDVLKED 289
++TTY++L +D
Sbjct: 594 LITTYEILLKD 604
Score = 47 (21.6 bits), Expect = 4.5e-05, Sum P(5) = 4.5e-05
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 450 HETCVGYAREVIQRLKDNILKRNVPG 475
H +CV +E ++LK+N + PG
Sbjct: 1180 HNSCVSAMQEYEEQLKENASEGKGPG 1205
Score = 44 (20.5 bits), Expect = 6.9e-05, Sum P(5) = 6.9e-05
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 984 IRMATTRLHLKEDDNDTSVDALSPDELASASVTNSSE 1020
IR +T + + D+DT + AS S T+ S+
Sbjct: 1075 IRSSTKKAQTNDSDSDTESKRQAQRSSASESETDESD 1111
Score = 38 (18.4 bits), Expect = 6.9e-05, Sum P(5) = 6.9e-05
Identities = 23/103 (22%), Positives = 45/103 (43%)
Query: 488 THAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALR- 546
T + LN +++L++ C H + + +++ EIL+ LI + G+ L
Sbjct: 746 TRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENG---QEILLSLI---RSSGKLILLD 799
Query: 547 KLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLD 589
KL+ L LI + + + + E + + +H RLD
Sbjct: 800 KLLTRLRERGNRVLIFSQMVRMLDILAEYLTI--KHYPFQRLD 840
Score = 37 (18.1 bits), Expect = 4.5e-05, Sum P(5) = 4.5e-05
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 732 DREKQYSAWWLEALHHAE 749
DR QY W + H+ +
Sbjct: 1663 DRHHQYEQHWYKDHHYGD 1680
>UNIPROTKB|D4AD08 [details] [associations]
symbol:Chd2 "Chromodomain helicase DNA binding protein 2
(Predicted)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:CH473980
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 KO:K11367 CTD:1106 OrthoDB:EOG4QRH36
IPI:IPI00778855 RefSeq:NP_001100993.1 UniGene:Rn.225034
Ensembl:ENSRNOT00000055829 GeneID:308738 KEGG:rno:308738
RGD:1310056 NextBio:659434 Uniprot:D4AD08
Length = 1834
Score = 132 (51.5 bits), Expect = 4.5e-05, Sum P(5) = 4.5e-05
Identities = 35/133 (26%), Positives = 64/133 (48%)
Query: 315 TLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 374
T+L I W + +DEA ++++ + + + + HR ITGTP+Q L +L+ LL F+
Sbjct: 611 TVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFI 670
Query: 375 KSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVS 434
F +W E + + G + HK + + R K V E LP + E +
Sbjct: 671 MPEKFE---FW-EDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDV--EKSLPAKVEQIL 724
Query: 435 WLTFSPIEEHFYQ 447
+ S +++ +Y+
Sbjct: 725 RVEMSALQKQYYK 737
Score = 61 (26.5 bits), Expect = 4.5e-05, Sum P(5) = 4.5e-05
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ ++
Sbjct: 513 ILADEMGLGKTIQTIS 528
Score = 52 (23.4 bits), Expect = 4.5e-05, Sum P(5) = 4.5e-05
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG---ARNSSLSDTSIMDISELVGADI 278
G LIV P L W E P + +Y G +RN+ I ++ + +
Sbjct: 541 GPFLIVVPLSTLTSWQREFEIWA-P-EVNVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 598
Query: 279 VLTTYDVLKED 289
++TTY++L +D
Sbjct: 599 LITTYEILLKD 609
Score = 47 (21.6 bits), Expect = 5.6e-05, Sum P(5) = 5.6e-05
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 450 HETCVGYAREVIQRLKDNILKRNVPG 475
H +CV +E ++LK+N + PG
Sbjct: 1185 HNSCVSAMQEYEEQLKENASEGKGPG 1210
Score = 44 (20.5 bits), Expect = 4.5e-05, Sum P(5) = 4.5e-05
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 984 IRMATTRLHLKEDDNDTSVDALSPDELASASVTNSSE 1020
IR +T + + D+DT + AS S T+ S+
Sbjct: 1080 IRSSTKKAQTNDSDSDTESKRQAQRSSASESETDDSD 1116
Score = 41 (19.5 bits), Expect = 4.5e-05, Sum P(5) = 4.5e-05
Identities = 24/104 (23%), Positives = 45/104 (43%)
Query: 488 THAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSM-DEILMVLIGKTKIEGEEALR 546
T + LN +++L++ C H + +R+ + S E+L LI + G+ L
Sbjct: 751 TRGSTSGFLNIVMELKKCCNHCYL----IRAPEDSERETGQEVLQSLI---RSSGKLILL 803
Query: 547 -KLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLD 589
KL+ L LI + + + + E + + +H RLD
Sbjct: 804 DKLLTRLRERGNRVLIFSQMVRMLDILAEYLTI--KHYPFQRLD 845
Score = 37 (18.1 bits), Expect = 5.6e-05, Sum P(5) = 5.6e-05
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 732 DREKQYSAWWLEALHHAE 749
DR QY W + H+ +
Sbjct: 1666 DRHHQYEQHWYKDHHYGD 1683
Score = 37 (18.1 bits), Expect = 0.00020, Sum P(5) = 0.00020
Identities = 18/78 (23%), Positives = 32/78 (41%)
Query: 851 SFQDYEARLFRLKKSQGDIASAEEA--VDLQKKNSSLNRFYWY---LSQPNKNSTSSSVG 905
+ +D E R K +I E+ V+ +++ L Y S K T+ S
Sbjct: 1035 TMEDEEELEERPHKDWDEIIPEEQRKKVEEEERQKELEEIYMLPRIRSSTKKAQTNDSDS 1094
Query: 906 NEEIKRRDVRETVVVSKS 923
+ E KR+ R + S++
Sbjct: 1095 DTESKRQAQRSSASESET 1112
>UNIPROTKB|F1MFS2 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006974
GO:GO:0006338 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 GO:GO:0008026 IPI:IPI00710168
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:DAAA02007335
Ensembl:ENSBTAT00000027762 Uniprot:F1MFS2
Length = 896
Score = 113 (44.8 bits), Expect = 4.7e-05, Sum P(5) = 4.7e-05
Identities = 37/154 (24%), Positives = 74/154 (48%)
Query: 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
W + +DEA +++ ++ + +TGTPIQ L +LY LL F++ FS
Sbjct: 170 WSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFSK 229
Query: 382 SRW--WIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ +++ +D E A E +K + + R K V+ EL P + E V + S
Sbjct: 230 EQVEDFVQRYQD-IEKESESASEL-YKLLQPFLLRRVKAEVATEL--PRKTEVVIYHGMS 285
Query: 440 PIEEHFYQS-QHETCVGYAREVIQRLK-DNILKR 471
+++ +Y++ + + E+ +++K N+L +
Sbjct: 286 ALQKKYYKAILMKDLDAFENEMAKKVKLQNVLSQ 319
Score = 79 (32.9 bits), Expect = 4.7e-05, Sum P(5) = 4.7e-05
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+CP +L+ W E+ R PG L Y G ++ D+ + ++LT
Sbjct: 98 GPFLILCPLSVLSNWKEEMERFA-PG-LSCVTYAGDKDKRACLQQ--DLKQESRFHVLLT 153
Query: 282 TYDVLKEDLS 291
TY++ +D S
Sbjct: 154 TYEICLKDAS 163
Score = 44 (20.5 bits), Expect = 4.7e-05, Sum P(5) = 4.7e-05
Identities = 22/95 (23%), Positives = 41/95 (43%)
Query: 480 DALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKI 539
DA N + A+ KL N L +LR+ HP + ++ P + + L+ GK +
Sbjct: 301 DAFENEM---AKKVKLQNVLSQLRKCVDHPYL----FDGVEPEPFEIGDHLIEASGKLHL 353
Query: 540 EGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKE 574
L KL+ L L+ ++Q + + ++
Sbjct: 354 -----LDKLLAFLYSKGHRVLLFSQMTQMLDILQD 383
Score = 39 (18.8 bits), Expect = 4.7e-05, Sum P(5) = 4.7e-05
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 14 RPYQRRAAYWMVQ 26
RPYQ + W+ Q
Sbjct: 49 RPYQLQGVNWLAQ 61
Score = 39 (18.8 bits), Expect = 4.7e-05, Sum P(5) = 4.7e-05
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 912 RDVRETVVVSKSPSELEVILGVIKNYCKTQLGREAISASSKQLHILEAMR 961
RD E +V K+ S+L++ +I+ T LG + +A + L + E ++
Sbjct: 473 RDTVEEIVYRKAASKLQLTNTIIEGGHFT-LGAQKPAADA-DLQLSEILK 520
Score = 38 (18.4 bits), Expect = 5.8e-05, Sum P(5) = 5.8e-05
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 855 YEARLFRLKKSQGDIASAEEAVDLQK 880
+E + + + S+ D S E+ V+LQK
Sbjct: 576 FEGKDYSKEPSKEDRESFEQLVNLQK 601
>UNIPROTKB|E1BS47 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02022009 EMBL:AADN02022010
IPI:IPI00598234 Ensembl:ENSGALT00000005903 ArrayExpress:E1BS47
Uniprot:E1BS47
Length = 1326
Score = 120 (47.3 bits), Expect = 4.9e-05, Sum P(4) = 4.9e-05
Identities = 36/135 (26%), Positives = 65/135 (48%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L I W + +DEA +++ E + +H+ +TGTP+Q +++L+ LL FL+
Sbjct: 280 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 339
Query: 377 SPFSISRWWIEVIRDPYENGDVGAMEFTHKF---FKEIMCRSSKVHVSDELQLPPQEECV 433
F +++ E GD+ E K K +M R K V E L P+EE +
Sbjct: 340 GRFPSETTFMQ------EFGDLKTEEQVQKLQAILKPMMLRRLKEDV--EKNLAPKEETI 391
Query: 434 SWLTFSPIEEHFYQS 448
+ + I++ +Y++
Sbjct: 392 IEVELTNIQKKYYRA 406
Score = 62 (26.9 bits), Expect = 4.9e-05, Sum P(4) = 4.9e-05
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 84 ILADEMGLGKTVELLACIF 102
ILADEMGLGKT++ + ++
Sbjct: 176 ILADEMGLGKTIQSITFLY 194
Score = 54 (24.1 bits), Expect = 4.9e-05, Sum P(4) = 4.9e-05
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 490 AEAAKLLNSLLKLRQACCHP 509
A LLN++++LR+ C HP
Sbjct: 422 ANVPNLLNTMMELRKCCNHP 441
Score = 46 (21.3 bits), Expect = 4.9e-05, Sum P(4) = 4.9e-05
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNS 260
G L++ P + W+ E T L +Y G++ S
Sbjct: 203 GPFLVIAPLSTIPNWEREFRTWTE---LNVVVYHGSQAS 238
>UNIPROTKB|I3LFY4 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001440
InterPro:IPR001650 InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271
Pfam:PF00515 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
OMA:TKNGDLE EMBL:CU469343 Ensembl:ENSSSCT00000023457 Uniprot:I3LFY4
Length = 1225
Score = 91 (37.1 bits), Expect = 5.6e-05, Sum P(5) = 5.6e-05
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 313 IPTLLTRIFWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLL 371
+ +L R F W + LDEA +++++ + A + A++R +TGTPIQ L +L+ L
Sbjct: 190 LSSLNGREFVWDYVILDEAHKIKTSSTKSAICARAIPARNRILLTGTPIQNNLQELWSLF 249
Query: 372 RF 373
F
Sbjct: 250 DF 251
Score = 77 (32.2 bits), Expect = 5.6e-05, Sum P(5) = 5.6e-05
Identities = 14/18 (77%), Positives = 18/18 (100%)
Query: 82 GGILADEMGLGKTVELLA 99
GGILAD+MGLGKTV+++A
Sbjct: 95 GGILADDMGLGKTVQIIA 112
Score = 56 (24.8 bits), Expect = 5.6e-05, Sum P(5) = 5.6e-05
Identities = 18/71 (25%), Positives = 37/71 (52%)
Query: 761 KIEEAISGSLNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKP 820
KI ++I+ S+N R+L ASR I+ + H++ ++L+ S + + + +E+
Sbjct: 1054 KISDSINKSINSRRSL--ASRRSLINVVLDHVEDMEERLDNSSEAKV-----AEDFLEEG 1106
Query: 821 KEEDMDRMRHC 831
EE ++ C
Sbjct: 1107 AEESINEAPEC 1117
Score = 51 (23.0 bits), Expect = 5.6e-05, Sum P(5) = 5.6e-05
Identities = 14/62 (22%), Positives = 31/62 (50%)
Query: 225 LIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYD 284
L++ P +++ W E + T PG ++ + G + ++ I + G +++TTY
Sbjct: 127 LLIMPTSLISTWLREFVKWT-PG-MRVKTFHGPSKDERT-RNLSRIQQRNG--VIITTYQ 181
Query: 285 VL 286
+L
Sbjct: 182 ML 183
Score = 47 (21.6 bits), Expect = 5.6e-05, Sum P(5) = 5.6e-05
Identities = 27/113 (23%), Positives = 50/113 (44%)
Query: 426 LPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNP 485
L + + + W+ P++E Y+ + + +E++ + + + V +P
Sbjct: 339 LSRKNDLIIWIRLVPLQEEIYRKF--VSLDHIKELLMETRSPLAELGVLKKLCD----HP 392
Query: 486 IITHAEAAKLLNSLLKLRQACCHPQVG--SSGLRSLQQSPLSMDEILMVLIGK 536
+ A A +LLN L +R + G SSG+ + Q +S DE LM GK
Sbjct: 393 RLLSARACQLLN-LGAVRFSVQDEIEGEDSSGVDHIDQ--VS-DETLMEESGK 441
>UNIPROTKB|E2R5Z7 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000017614
NextBio:20854276 Uniprot:E2R5Z7
Length = 1831
Score = 131 (51.2 bits), Expect = 5.6e-05, Sum P(5) = 5.6e-05
Identities = 35/133 (26%), Positives = 64/133 (48%)
Query: 315 TLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 374
T+L I W + +DEA ++++ + + + + HR ITGTP+Q L +L+ LL F+
Sbjct: 607 TVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFI 666
Query: 375 KSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVS 434
F +W E + + G + HK + + R K V E LP + E +
Sbjct: 667 MPEKFE---FW-EDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDV--EKSLPAKVEQIL 720
Query: 435 WLTFSPIEEHFYQ 447
+ S +++ +Y+
Sbjct: 721 RVEMSALQKQYYK 733
Score = 61 (26.5 bits), Expect = 5.6e-05, Sum P(5) = 5.6e-05
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ ++
Sbjct: 509 ILADEMGLGKTIQTIS 524
Score = 53 (23.7 bits), Expect = 5.6e-05, Sum P(5) = 5.6e-05
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG---ARNSSLSDTSIMDISELVGADI 278
G LIV P L W E P + +Y G +RN+ I ++ + +
Sbjct: 537 GPFLIVVPLSTLTSWQREFEIWA-P-EINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 594
Query: 279 VLTTYDVLKED 289
++TTY++L +D
Sbjct: 595 LITTYEILLKD 605
Score = 47 (21.6 bits), Expect = 5.6e-05, Sum P(5) = 5.6e-05
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 450 HETCVGYAREVIQRLKDNILKRNVPG 475
H +CV +E ++LK+N + PG
Sbjct: 1181 HNSCVSAMQEYEEQLKENASEGKGPG 1206
Score = 44 (20.5 bits), Expect = 0.00011, Sum P(5) = 0.00011
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 984 IRMATTRLHLKEDDNDTSVDALSPDELASASVTNSSE 1020
IR +T + + D+DT + AS S T+ S+
Sbjct: 1076 IRSSTKKAQTNDSDSDTESKRQAQRSSASESETDDSD 1112
Score = 37 (18.1 bits), Expect = 5.6e-05, Sum P(5) = 5.6e-05
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 732 DREKQYSAWWLEALHHAE 749
DR QY W + H+ +
Sbjct: 1663 DRHHQYEQHWYKDHHYGD 1680
Score = 37 (18.1 bits), Expect = 0.00011, Sum P(5) = 0.00011
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 488 THAEAAKLLNSLLKLRQACCH 508
T + LN +++L++ C H
Sbjct: 747 TRGSTSGFLNIVMELKKCCNH 767
>TAIR|locus:2024198 [details] [associations]
symbol:SWI2 "switch 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016020 "membrane"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0016020 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HGNRKDN
IPI:IPI00529418 RefSeq:NP_171871.2 UniGene:At.42525
UniGene:At.42526 ProteinModelPortal:F4I2H2 SMR:F4I2H2 PRIDE:F4I2H2
EnsemblPlants:AT1G03750.1 GeneID:839417 KEGG:ath:AT1G03750
Uniprot:F4I2H2
Length = 862
Score = 82 (33.9 bits), Expect = 5.7e-05, Sum P(3) = 5.7e-05
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLK 375
+L+ I W + DEA +++ + E L + K R +TGT +Q K+ +L+ L ++
Sbjct: 262 VLSGINWEIVIADEAHRLKNEKSKLYEACLEIKTKKRIGLTGTVMQNKISELFNLFEWV- 320
Query: 376 SSPFSISRWWIEVIRDPYE 394
+P S+ E RD Y+
Sbjct: 321 -APGSLGTR--EHFRDFYD 336
Score = 80 (33.2 bits), Expect = 5.7e-05, Sum P(3) = 5.7e-05
Identities = 17/66 (25%), Positives = 36/66 (54%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+CP+ I+ W++E +R K +Y G+ N + I++ + G ++++T
Sbjct: 199 GPVLIICPSSIIHNWESEFSRWA--SFFKVSVYHGS-NRDM----ILEKLKARGVEVLVT 251
Query: 282 TYDVLK 287
++D +
Sbjct: 252 SFDTFR 257
Score = 71 (30.1 bits), Expect = 5.7e-05, Sum P(3) = 5.7e-05
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 82 GGILADEMGLGKTVELLACIFA 103
GGIL D+MGLGKT++ +A + A
Sbjct: 159 GGILGDDMGLGKTIQTIAFLAA 180
>UNIPROTKB|J9PA90 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000045903 Uniprot:J9PA90
Length = 1840
Score = 131 (51.2 bits), Expect = 5.7e-05, Sum P(5) = 5.7e-05
Identities = 35/133 (26%), Positives = 64/133 (48%)
Query: 315 TLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 374
T+L I W + +DEA ++++ + + + + HR ITGTP+Q L +L+ LL F+
Sbjct: 617 TVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFI 676
Query: 375 KSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVS 434
F +W E + + G + HK + + R K V E LP + E +
Sbjct: 677 MPEKFE---FW-EDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDV--EKSLPAKVEQIL 730
Query: 435 WLTFSPIEEHFYQ 447
+ S +++ +Y+
Sbjct: 731 RVEMSALQKQYYK 743
Score = 61 (26.5 bits), Expect = 5.7e-05, Sum P(5) = 5.7e-05
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 84 ILADEMGLGKTVELLA 99
ILADEMGLGKT++ ++
Sbjct: 519 ILADEMGLGKTIQTIS 534
Score = 53 (23.7 bits), Expect = 5.7e-05, Sum P(5) = 5.7e-05
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG---ARNSSLSDTSIMDISELVGADI 278
G LIV P L W E P + +Y G +RN+ I ++ + +
Sbjct: 547 GPFLIVVPLSTLTSWQREFEIWA-P-EINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 604
Query: 279 VLTTYDVLKED 289
++TTY++L +D
Sbjct: 605 LITTYEILLKD 615
Score = 47 (21.6 bits), Expect = 5.7e-05, Sum P(5) = 5.7e-05
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 450 HETCVGYAREVIQRLKDNILKRNVPG 475
H +CV +E ++LK+N + PG
Sbjct: 1191 HNSCVSAMQEYEEQLKENASEGKGPG 1216
Score = 44 (20.5 bits), Expect = 0.00011, Sum P(5) = 0.00011
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 984 IRMATTRLHLKEDDNDTSVDALSPDELASASVTNSSE 1020
IR +T + + D+DT + AS S T+ S+
Sbjct: 1086 IRSSTKKAQTNDSDSDTESKRQAQRSSASESETDDSD 1122
Score = 37 (18.1 bits), Expect = 5.7e-05, Sum P(5) = 5.7e-05
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 732 DREKQYSAWWLEALHHAE 749
DR QY W + H+ +
Sbjct: 1672 DRHHQYEQHWYKDHHYGD 1689
Score = 37 (18.1 bits), Expect = 0.00011, Sum P(5) = 0.00011
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 488 THAEAAKLLNSLLKLRQACCH 508
T + LN +++L++ C H
Sbjct: 757 TRGSTSGFLNIVMELKKCCNH 777
>CGD|CAL0002614 [details] [associations]
symbol:orf19.4502 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045898 "regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0002614 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 InterPro:IPR022707 Pfam:PF12054 EMBL:AACQ01000142
EMBL:AACQ01000141 RefSeq:XP_712896.1 RefSeq:XP_712928.1
ProteinModelPortal:Q59TC9 STRING:Q59TC9 GeneID:3645462
GeneID:3645500 KEGG:cal:CaO19.11978 KEGG:cal:CaO19.4502
Uniprot:Q59TC9
Length = 1915
Score = 90 (36.7 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 36/143 (25%), Positives = 63/143 (44%)
Query: 323 WRIC-LDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
+ C LDE ++++ ++ ++ R+ A+HR ++GTPIQ + +L+ L FL
Sbjct: 1432 YNYCVLDEGHIIKNASSKLSKSVKRVKAEHRLILSGTPIQNNVLELWSLFDFLMPGFLGT 1491
Query: 382 SRWWIEVIRDPY---ENG-------DVGA--MEFTHKFFKEIMCRSSKVHVSDELQLPPQ 429
+ + E P N + GA ME HK M R K V +L PP+
Sbjct: 1492 EKVFHEKFAKPIAASRNSKTSSKEQEAGALAMESLHKQVLPFMLRRLKEDVLSDL--PPK 1549
Query: 430 EECVSWLTFSPIEEHFYQSQHET 452
+ S +++ Y+ +T
Sbjct: 1550 IIQDYYCELSDLQKKLYKDFAKT 1572
Score = 87 (35.7 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 18/67 (26%), Positives = 38/67 (56%)
Query: 224 TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTY 283
+L++CP ++ W+ EI ++ P +K +Y G+ + + ++ AD+V+T+Y
Sbjct: 1365 SLVICPPSLIGHWEQEINQYA-P-FMKVLVYAGSPSIRIPLRG-----QIPDADVVVTSY 1417
Query: 284 DVLKEDL 290
DV + D+
Sbjct: 1418 DVCRNDV 1424
Score = 66 (28.3 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 75 YTSSYVFGGILADEMGLGKTVELLACI 101
+ + Y GIL D+MGLGKT++ + CI
Sbjct: 1315 FLNKYHLHGILCDDMGLGKTLQTI-CI 1340
>CGD|CAL0000801 [details] [associations]
symbol:orf19.1720 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 92 (37.4 bits), Expect = 6.6e-05, Sum P(5) = 6.6e-05
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 374
L +I W + +DE ++++ ++ +L +R +TGTP+Q L++L+ LL F+
Sbjct: 290 LVKINWKYLIVDEGHRLKNSQCLLIKILKKLNVSNRLLLTGTPLQNNLNELWSLLNFI 347
Score = 65 (27.9 bits), Expect = 6.6e-05, Sum P(5) = 6.6e-05
Identities = 12/17 (70%), Positives = 16/17 (94%)
Query: 83 GILADEMGLGKTVELLA 99
GILADEMGLGKT++ ++
Sbjct: 196 GILADEMGLGKTLQCIS 212
Score = 65 (27.9 bits), Expect = 6.6e-05, Sum P(5) = 6.6e-05
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G L+V P L+ W EI R P +K Y G + +D ++ E +I+LT
Sbjct: 224 GPFLVVVPVSTLSNWYNEI-RKFAP-KIKVTKYIGTKQER-NDIDLLQQQETT--NIILT 278
Query: 282 TYDVLKEDLS 291
+Y++ D +
Sbjct: 279 SYEISIRDFN 288
Score = 54 (24.1 bits), Expect = 6.6e-05, Sum P(5) = 6.6e-05
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 480 DALYNPIITHAEAAKLLN-SLLKLRQACCHP 509
DA+Y I+ A+ KL N +++LR C P
Sbjct: 562 DAIYQDILKEAKHLKLQNLKMIQLRNICNSP 592
Score = 37 (18.1 bits), Expect = 6.6e-05, Sum P(5) = 6.6e-05
Identities = 25/109 (22%), Positives = 44/109 (40%)
Query: 944 REAISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDEIRMATTRLHLKEDDNDTSV- 1002
R I S +++ I + K + + Q +F + ++ ATT ND S+
Sbjct: 736 RFVIKDSIEEVLISRSGSKRFLERLVIQMGQFKFSNFNKKLTAATTSNEQGAIKNDWSIN 795
Query: 1003 DALSPDELASASVTN------SSEKFISMTLLSQVKGKLRYLKVSTECF 1045
D + ++ S N S+E+ + L Q +L L S EC+
Sbjct: 796 DMMELSKIHFKSTQNGQTSQDSAEEDEKILLSDQEIDEL--LDRSVECY 842
>UNIPROTKB|Q5AJ72 [details] [associations]
symbol:CaO19.1720 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 92 (37.4 bits), Expect = 6.6e-05, Sum P(5) = 6.6e-05
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 374
L +I W + +DE ++++ ++ +L +R +TGTP+Q L++L+ LL F+
Sbjct: 290 LVKINWKYLIVDEGHRLKNSQCLLIKILKKLNVSNRLLLTGTPLQNNLNELWSLLNFI 347
Score = 65 (27.9 bits), Expect = 6.6e-05, Sum P(5) = 6.6e-05
Identities = 12/17 (70%), Positives = 16/17 (94%)
Query: 83 GILADEMGLGKTVELLA 99
GILADEMGLGKT++ ++
Sbjct: 196 GILADEMGLGKTLQCIS 212
Score = 65 (27.9 bits), Expect = 6.6e-05, Sum P(5) = 6.6e-05
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G L+V P L+ W EI R P +K Y G + +D ++ E +I+LT
Sbjct: 224 GPFLVVVPVSTLSNWYNEI-RKFAP-KIKVTKYIGTKQER-NDIDLLQQQETT--NIILT 278
Query: 282 TYDVLKEDLS 291
+Y++ D +
Sbjct: 279 SYEISIRDFN 288
Score = 54 (24.1 bits), Expect = 6.6e-05, Sum P(5) = 6.6e-05
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 480 DALYNPIITHAEAAKLLN-SLLKLRQACCHP 509
DA+Y I+ A+ KL N +++LR C P
Sbjct: 562 DAIYQDILKEAKHLKLQNLKMIQLRNICNSP 592
Score = 37 (18.1 bits), Expect = 6.6e-05, Sum P(5) = 6.6e-05
Identities = 25/109 (22%), Positives = 44/109 (40%)
Query: 944 REAISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDEIRMATTRLHLKEDDNDTSV- 1002
R I S +++ I + K + + Q +F + ++ ATT ND S+
Sbjct: 736 RFVIKDSIEEVLISRSGSKRFLERLVIQMGQFKFSNFNKKLTAATTSNEQGAIKNDWSIN 795
Query: 1003 DALSPDELASASVTN------SSEKFISMTLLSQVKGKLRYLKVSTECF 1045
D + ++ S N S+E+ + L Q +L L S EC+
Sbjct: 796 DMMELSKIHFKSTQNGQTSQDSAEEDEKILLSDQEIDEL--LDRSVECY 842
>UNIPROTKB|H3BTW3 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00384 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 EMBL:AC007906
EMBL:AC079416 HGNC:HGNC:25701 Ensembl:ENST00000565803 Bgee:H3BTW3
Uniprot:H3BTW3
Length = 1099
Score = 120 (47.3 bits), Expect = 6.7e-05, Sum P(4) = 6.7e-05
Identities = 36/135 (26%), Positives = 66/135 (48%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L I W + +DEA +++ E + +H+ +TGTP+Q +++L+ LL FL+
Sbjct: 512 LNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEP 571
Query: 377 SPFSISRWWIEVIRDPYENGDVGAMEFTHKF---FKEIMCRSSKVHVSDELQLPPQEECV 433
F +++ E GD+ E K K +M R K V E +L P+EE +
Sbjct: 572 LRFPSESTFMQ------EFGDLKTEEQVQKLQAILKPMMLRRLKEDV--EKKLAPKEETI 623
Query: 434 SWLTFSPIEEHFYQS 448
+ + I++ +Y++
Sbjct: 624 IEVELTNIQKKYYRA 638
Score = 62 (26.9 bits), Expect = 6.7e-05, Sum P(4) = 6.7e-05
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 84 ILADEMGLGKTVELLACIF 102
ILADEMGLGKT++ + ++
Sbjct: 408 ILADEMGLGKTIQSITFLY 426
Score = 48 (22.0 bits), Expect = 6.7e-05, Sum P(4) = 6.7e-05
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 495 LLNSLLKLRQACCHP 509
L+N++++LR+ C HP
Sbjct: 659 LVNTMMELRKCCNHP 673
Score = 47 (21.6 bits), Expect = 6.7e-05, Sum P(4) = 6.7e-05
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGA 257
G LI+ P +A W+ E T + +Y G+
Sbjct: 435 GPFLIIAPLSTIANWEREFRTWT---DINVVVYHGS 467
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 114 (45.2 bits), Expect = 6.8e-05, Sum P(5) = 6.8e-05
Identities = 40/145 (27%), Positives = 66/145 (45%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFL 374
LL+RI W + +DE +++ + T Y +++R +TGTP+Q L +L+ LL F+
Sbjct: 984 LLSRIKWVHMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILTGTPLQNNLPELWALLNFV 1043
Query: 375 KSSPFSISRWWIEVIRDPYEN--GD--VGAMEFT--------HKFFKEIMCRSSKVHVSD 422
F+ + + E P+ N G +G E HK + + R K V
Sbjct: 1044 LPKIFNSIKSFDEWFNTPFANTGGQDKIGLNEEEALLIIKRLHKVLRPFLFRRLKKDV-- 1101
Query: 423 ELQLPPQEECVSWLTFSPIEEHFYQ 447
E +LP + E V S ++ YQ
Sbjct: 1102 EKELPDKVEKVIKCPLSGLQLKLYQ 1126
Score = 72 (30.4 bits), Expect = 6.8e-05, Sum P(5) = 6.8e-05
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A I
Sbjct: 890 GILADEMGLGKTIQTIAFI 908
Score = 51 (23.0 bits), Expect = 6.8e-05, Sum P(5) = 6.8e-05
Identities = 15/56 (26%), Positives = 31/56 (55%)
Query: 495 LLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVM 550
L N++++L++ C HP + R++ S ++D +L GK ++ + L KL +
Sbjct: 1148 LQNTVMQLKKICNHPFIFEDVERAIDPSGTNVD-LLWRAAGKFELL-DRILPKLFL 1201
Score = 49 (22.3 bits), Expect = 6.8e-05, Sum P(5) = 6.8e-05
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+ P L W E + P S+K Y+G L T I +++LT
Sbjct: 919 GPFLIIVPLSTLTNWIMEFEKWA-P-SVKKIAYKGP--PQLRKTLQSQIRSS-NFNVLLT 973
Query: 282 TYDVLKED 289
T++ + +D
Sbjct: 974 TFEYIIKD 981
Score = 41 (19.5 bits), Expect = 6.8e-05, Sum P(5) = 6.8e-05
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 992 HLKEDDNDTSVDALSPDELASASVTNSSEKFI 1023
H +DD+D + L DEL + ++ + E+ +
Sbjct: 1360 HDGDDDHDLTYGELQDDEL-NELISRTDEELV 1390
>TAIR|locus:2051678 [details] [associations]
symbol:ETL1 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC005936 HOGENOM:HOG000172362
KO:K14439 EMBL:AY059857 EMBL:BT002576 IPI:IPI00520453 PIR:H84432
RefSeq:NP_178318.1 UniGene:At.13358 ProteinModelPortal:Q9ZUL5
SMR:Q9ZUL5 IntAct:Q9ZUL5 PaxDb:Q9ZUL5 PRIDE:Q9ZUL5
EnsemblPlants:AT2G02090.1 GeneID:814740 KEGG:ath:AT2G02090
TAIR:At2g02090 InParanoid:Q9ZUL5 OMA:CAKISAD PhylomeDB:Q9ZUL5
ProtClustDB:CLSN2683669 ArrayExpress:Q9ZUL5 Genevestigator:Q9ZUL5
Uniprot:Q9ZUL5
Length = 763
Score = 118 (46.6 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 43/163 (26%), Positives = 76/163 (46%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSD--TSIMDISELVGADIV 279
G L+VCPA +L W+ E+ R P S Y GA ++ S S+ + +++
Sbjct: 264 GPHLVVCPASVLENWEREL-RKWCP-SFTVLQYHGAARAAYSRELNSLSKAGKPPPFNVL 321
Query: 280 LTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA 339
L Y + + H S++ + DR+ + KR+ W + +DEA ++ +
Sbjct: 322 LVCYSLFER---H-SEQQKDDRKVL---KRWR----------WSCVLMDEAHALKDKNSY 364
Query: 340 ATE--MALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 380
+ M++ A R +TGTP+Q L +L+ LL F+ F+
Sbjct: 365 RWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMLPDIFT 407
Score = 66 (28.3 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 82 GGILADEMGLGKTVELL 98
G ILADEMGLGKT++ +
Sbjct: 234 GAILADEMGLGKTIQAI 250
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 112 (44.5 bits), Expect = 7.4e-05, Sum P(5) = 7.4e-05
Identities = 37/154 (24%), Positives = 73/154 (47%)
Query: 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
W + +DEA +++ ++ + +TGTPIQ L +LY LL F++ FS
Sbjct: 170 WSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFSK 229
Query: 382 SRW--WIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ +++ +D E A E +K + + R K V+ EL P + E V + S
Sbjct: 230 EQVEDFVQRYQD-IEKESESASEL-YKLLQPFLLRRVKAEVATEL--PRKTEVVIYHGMS 285
Query: 440 PIEEHFYQS-QHETCVGYAREVIQRLK-DNILKR 471
+++ +Y++ + + E +++K N+L +
Sbjct: 286 ALQKKYYKAILMKDLDAFENETAKKVKLQNVLSQ 319
Score = 79 (32.9 bits), Expect = 7.4e-05, Sum P(5) = 7.4e-05
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+CP +L+ W E+ R PG L Y G ++ D+ + ++LT
Sbjct: 98 GPFLILCPLSVLSNWKEEMERFA-PG-LSCVTYAGDKDKRACLQQ--DLKQESRFHVLLT 153
Query: 282 TYDVLKEDLS 291
TY++ +D S
Sbjct: 154 TYEICLKDAS 163
Score = 43 (20.2 bits), Expect = 7.4e-05, Sum P(5) = 7.4e-05
Identities = 19/85 (22%), Positives = 37/85 (43%)
Query: 490 AEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLV 549
A+ KL N L +LR+ HP + ++ P + + L+ GK + L KL+
Sbjct: 308 AKKVKLQNVLSQLRKCVDHPYL----FDGVEPEPFEIGDHLIEASGKLHL-----LDKLL 358
Query: 550 MALNGLAGIALIEKNLSQAVSLYKE 574
L L+ ++Q + + ++
Sbjct: 359 AFLYSKGHRVLLFSQMTQMLDILQD 383
Score = 39 (18.8 bits), Expect = 7.4e-05, Sum P(5) = 7.4e-05
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 14 RPYQRRAAYWMVQ 26
RPYQ + W+ Q
Sbjct: 49 RPYQLQGVNWLAQ 61
Score = 39 (18.8 bits), Expect = 7.4e-05, Sum P(5) = 7.4e-05
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 912 RDVRETVVVSKSPSELEVILGVIKNYCKTQLGREAISASSKQLHILEAMR 961
RD E +V K+ S+L++ +I+ T LG + +A + L + E ++
Sbjct: 474 RDTVEEIVYRKAASKLQLTNTIIEGGHFT-LGAQKPAADA-DLQLSEILK 521
Score = 38 (18.4 bits), Expect = 9.2e-05, Sum P(5) = 9.2e-05
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 855 YEARLFRLKKSQGDIASAEEAVDLQK 880
+E + + + S+ D S E+ V+LQK
Sbjct: 577 FEGKDYSKEPSKEDRESFEQLVNLQK 602
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 119 (46.9 bits), Expect = 7.6e-05, Sum P(3) = 7.6e-05
Identities = 38/143 (26%), Positives = 64/143 (44%)
Query: 317 LTRIFWWRICLDEAQMVES-NAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLK 375
L R W + +DE +++ N E+ + L ++ +TGTP+Q L +L+ LL FL
Sbjct: 353 LQRFHWNYLIVDEGHRIKNLNCRLVQELKM-LPTDNKLLLTGTPLQNNLSELWSLLNFLL 411
Query: 376 SSPF----SISRWW-IEVIRDPYEN-----GDVGAMEFTHKFFKEIMCRSSKVHVSDELQ 425
F S W+ I I EN + + H + R K V+ L+
Sbjct: 412 PDVFDDLKSFESWFDISTITSDAENIVANEREQNILHMLHLILTPFLLRRLKSDVT--LE 469
Query: 426 LPPQEECVSWLTFSPIEEHFYQS 448
+PP++E V + + +E FY +
Sbjct: 470 VPPKKEIVVYAPLTNKQEAFYMA 492
Score = 71 (30.1 bits), Expect = 7.6e-05, Sum P(3) = 7.6e-05
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A I
Sbjct: 254 GILADEMGLGKTIQCIAHI 272
Score = 40 (19.1 bits), Expect = 7.6e-05, Sum P(3) = 7.6e-05
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 469 LKRNVPGHASSDALYNPII-THAEA-AKLLNSLLKLRQACCH 508
+++ + ASS + N + A+ KL N L+ L++ C H
Sbjct: 548 VQQELDSQASSTPVVNVFMPVDAQVNLKLQNILMLLKRCCNH 589
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 116 (45.9 bits), Expect = 7.9e-05, Sum P(5) = 7.9e-05
Identities = 33/132 (25%), Positives = 66/132 (50%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L +I W I +DEA +++ + +++ +++R ITGTP+Q L +L+ LL FL
Sbjct: 313 LKKINWEYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPLQNNLHELWALLNFLLP 372
Query: 377 SPFSISRWWIEVIR-DPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSW 435
FS ++ + + + E ++ H + + R K V E L P++E +
Sbjct: 373 DIFSDAQDFDDWFSSESTEEDQDKIVKQLHTVLQPFLLRRIKSDV--ETSLLPKKELNLY 430
Query: 436 LTFSPIEEHFYQ 447
+ S +++ +Y+
Sbjct: 431 VGMSSMQKKWYK 442
Score = 65 (27.9 bits), Expect = 7.9e-05, Sum P(5) = 7.9e-05
Identities = 12/17 (70%), Positives = 16/17 (94%)
Query: 83 GILADEMGLGKTVELLA 99
GILADEMGLGKT++ ++
Sbjct: 217 GILADEMGLGKTLQTIS 233
Score = 56 (24.8 bits), Expect = 7.9e-05, Sum P(5) = 7.9e-05
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 494 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKL 548
+LLN +++LR+ C HP + G P + DE L+ K ++ ++ L+KL
Sbjct: 464 RLLNIMMQLRKCCNHPYL-FDGAEP--GPPYTTDEHLVYNAAKLQVL-DKLLKKL 514
Score = 40 (19.1 bits), Expect = 7.9e-05, Sum P(5) = 7.9e-05
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 14 RPYQRRAAYWMVQREK 29
RPYQ + W+V K
Sbjct: 197 RPYQIQGVNWLVSLHK 212
Score = 40 (19.1 bits), Expect = 7.9e-05, Sum P(5) = 7.9e-05
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 850 ESFQDYEARLFRLKKSQGDIASA---EEAVDLQKKNSSLNRFYWYLSQPNKNSTSS 902
+S ++ + F+ KK Q DI S +K+N S++ +Y + ++ST S
Sbjct: 740 DSAYEWNGQDFK-KKIQRDIISPLLLNPTKRERKENYSIDNYYKDVLNTGRSSTPS 794
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 112 (44.5 bits), Expect = 8.9e-05, Sum P(5) = 8.9e-05
Identities = 39/143 (27%), Positives = 64/143 (44%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFL 374
+L +I W + +DE ++++ T++ Y A R +TGTP+Q KL +L+ LL FL
Sbjct: 869 ILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFL 928
Query: 375 KSSPF----SISRWWIEVIRDPYENGDVGAMEFT------HKFFKEIMCRSSKVHVSDEL 424
+ F + +W+ E D+ E HK + + R K V E
Sbjct: 929 LPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEV--EA 986
Query: 425 QLPPQEECVSWLTFSPIEEHFYQ 447
QLP + E V S ++ Y+
Sbjct: 987 QLPEKVEYVIKCDMSALQRVLYR 1009
Score = 73 (30.8 bits), Expect = 8.9e-05, Sum P(5) = 8.9e-05
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A I
Sbjct: 775 GILADEMGLGKTIQTIALI 793
Score = 48 (22.0 bits), Expect = 8.9e-05, Sum P(5) = 8.9e-05
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 495 LLNSLLKLRQACCHP 509
L+N++++LR+ C HP
Sbjct: 1035 LMNTIMQLRKICNHP 1049
Score = 47 (21.6 bits), Expect = 8.9e-05, Sum P(5) = 8.9e-05
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+ P L+ W E + P +K Y+G+ + + + + +++LT
Sbjct: 804 GPFLIIVPLSTLSNWAYEFDKWA-PSVVKVS-YKGSPAARRAFVPQLRSGKF---NVLLT 858
Query: 282 TYDVLKED 289
TY+ + +D
Sbjct: 859 TYEYIIKD 866
Score = 45 (20.9 bits), Expect = 8.9e-05, Sum P(5) = 8.9e-05
Identities = 36/149 (24%), Positives = 59/149 (39%)
Query: 847 ELDESFQDYEAR-LFRLKKS--QGDIASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSS 903
E+D S E + L +LK + +G + EE V +K + R S ST S
Sbjct: 1343 EVDYSDSLTEKQWLKQLKAAIEEGTLEEIEEEVRQKKSSRKRKRDSEAGSSTPTTSTRSR 1402
Query: 904 VGNEEIKRRDVRETVVVSK-SPS------ELEVILGVIKNYCKTQLGREAISASSKQLHI 956
+EE K++ R K SP+ +++ I+ + Y + GR+ ++ I
Sbjct: 1403 DKDEESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQL-----SEVFI 1457
Query: 957 LEAMRKEYANARSLATAQAQFLRAHDEIR 985
RKE L F + + IR
Sbjct: 1458 QLPSRKELPEYYELIRKPVDFKKIKERIR 1486
Score = 41 (19.5 bits), Expect = 0.00021, Sum P(5) = 0.00021
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 985 RMATTRLHLKEDDNDTSVDALSPDELASASVTNSSEKF 1022
R A + L+ ++ D D + DE + + E+F
Sbjct: 1243 RRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEF 1280
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 124 (48.7 bits), Expect = 9.2e-05, Sum P(5) = 9.2e-05
Identities = 38/132 (28%), Positives = 62/132 (46%)
Query: 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
W + LDEAQ +++ + + L + A+ R +TGTP+Q L +L+ L+ FL + FS
Sbjct: 680 WQYLILDEAQNIKNWKSQRWQALLNVRARRRLLLTGTPLQNSLMELWSLMHFLMPTIFSS 739
Query: 382 SRWWIEVIRDPYENGDVGAMEFT-------HKFFKEIMCRSSKVHVSDELQLPPQEECVS 434
+ + +P G MEF HK + + R K V E QLP + E +
Sbjct: 740 HDDFKDWFSNPLTGMMEGNMEFNAPLIGRLHKVLRPFILRRLKKEV--EKQLPEKTEHIV 797
Query: 435 WLTFSPIEEHFY 446
+ S + + Y
Sbjct: 798 NCSLSKRQRYLY 809
Score = 74 (31.1 bits), Expect = 9.2e-05, Sum P(5) = 9.2e-05
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 83 GILADEMGLGKTVELLACIFAHRKPASDDSIF 114
GILADEMGLGKT++ ++ + AH A +SI+
Sbjct: 579 GILADEMGLGKTIQTIS-LLAHM--ACSESIW 607
Score = 45 (20.9 bits), Expect = 9.2e-05, Sum P(5) = 9.2e-05
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 495 LLNSLLKLRQACCHPQV 511
+LN +++LR+ C HP +
Sbjct: 830 VLNIVMQLRKCCNHPNL 846
Score = 45 (20.9 bits), Expect = 9.2e-05, Sum P(5) = 9.2e-05
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG 256
G LIV P ++ W+ E + P +LK Y G
Sbjct: 608 GPHLIVVPTSVILNWEMEFKKWC-P-ALKILTYFG 640
Score = 45 (20.9 bits), Expect = 9.2e-05, Sum P(5) = 9.2e-05
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 784 SISGLTYHIQSSLDQLEA-SRKTLLDRLLEIDQTM 817
S SGL +I+++L +E SR LL+ D M
Sbjct: 1135 SSSGLPSYIRNNLSNIELNSRSLLLNTSTNFDTRM 1169
Score = 41 (19.5 bits), Expect = 0.00022, Sum P(5) = 0.00022
Identities = 49/196 (25%), Positives = 81/196 (41%)
Query: 717 QEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFS-AE-LIRKIEEAISGSLNKSR 774
+E + YM++ L E+ Y+ +LE + E ++ AE LI + E +LN +
Sbjct: 1423 EEADEKYMELIQQLKPIER-YAINFLETQYKPEFEEECKEAEALIDQKREEWDKNLNDTA 1481
Query: 775 ALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLL---EIDQTME---KPKEEDMDRM 828
+ S S L +S D ++S +LLD + E+D M P D D
Sbjct: 1482 VIDLDD---SDSLLLNDPSTSADFYQSS--SLLDEIKFYDELDDIMPIWLPPSPPDSDAD 1536
Query: 829 RHCRICYGVGDGPICVHCELDESFQDYEARLFRLKKSQGDIASAEEAVDLQKKNSSLNRF 888
R+ D + + E++ Q EARL ++ + Q+K ++LN F
Sbjct: 1537 FDLRM----EDDCLDLMYEIE---QMNEARLPQVCHEM-----RRPLAEKQQKQNTLNAF 1584
Query: 889 YWYLSQPNKNSTSSSV 904
LS K S +V
Sbjct: 1585 NDILSAKEKESVYDAV 1600
>ZFIN|ZDB-GENE-030605-1 [details] [associations]
symbol:smarca4 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 4"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031101 "fin regeneration" evidence=IMP] [GO:0003407 "neural
retina development" evidence=IMP] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0014032 "neural crest cell
development" evidence=IMP] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=IMP] [GO:0010842 "retina
layer formation" evidence=IMP] [GO:0021634 "optic nerve formation"
evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
[GO:0060973 "cell migration involved in heart development"
evidence=IMP] [GO:0001947 "heart looping" evidence=IMP] [GO:0060038
"cardiac muscle cell proliferation" evidence=IMP] [GO:0048596
"embryonic camera-type eye morphogenesis" evidence=IMP] [GO:0000185
"activation of MAPKKK activity" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 ZFIN:ZDB-GENE-030605-1 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0030182 GO:GO:0003677 GO:GO:0007417
GO:GO:0004386 GO:GO:0001947 GO:GO:0010842 GO:GO:0014032
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0031101 GO:GO:0060038 GO:GO:0048596
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 GO:GO:0060059 GO:GO:0000185 HOGENOM:HOG000172363
HOVERGEN:HBG056636 CTD:6597 OMA:HKPMESM EMBL:BX322663 EMBL:BC163918
EMBL:BC163920 EMBL:AY205256 EMBL:AY218841 IPI:IPI00493397
RefSeq:NP_853634.1 UniGene:Dr.2414 SMR:Q7ZSY3 STRING:Q7ZSY3
Ensembl:ENSDART00000115110 Ensembl:ENSDART00000134514 GeneID:353295
KEGG:dre:353295 InParanoid:Q7ZSY3 NextBio:20812727 GO:GO:0060973
GO:GO:0021634 Uniprot:Q7ZSY3
Length = 1627
Score = 108 (43.1 bits), Expect = 9.5e-05, Sum P(5) = 9.5e-05
Identities = 38/143 (26%), Positives = 64/143 (44%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFL 374
+L ++ W + +DE ++++ T++ Y A R +TGTP+Q KL +L+ LL FL
Sbjct: 881 VLAKLRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRRVLLTGTPLQNKLPELWALLNFL 940
Query: 375 KSSPF----SISRWWIEVIRDPYENGDVGAMEFT------HKFFKEIMCRSSKVHVSDEL 424
+ F + +W+ E D+ E HK + + R K V E
Sbjct: 941 LPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEV--EA 998
Query: 425 QLPPQEECVSWLTFSPIEEHFYQ 447
QLP + E V S ++ Y+
Sbjct: 999 QLPEKVEYVIKCDMSALQRVLYR 1021
Score = 73 (30.8 bits), Expect = 9.5e-05, Sum P(5) = 9.5e-05
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A I
Sbjct: 787 GILADEMGLGKTIQTIALI 805
Score = 50 (22.7 bits), Expect = 9.5e-05, Sum P(5) = 9.5e-05
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+ P L+ W E + P +K Y+G S + + + I ++++T
Sbjct: 816 GPFLIIVPLSTLSNWVYEFDKWA-PSVVKVS-YKG---SPAARRAFLPILRSGKFNVLVT 870
Query: 282 TYDVLKED 289
TY+ + +D
Sbjct: 871 TYEYIIKD 878
Score = 48 (22.0 bits), Expect = 9.5e-05, Sum P(5) = 9.5e-05
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 495 LLNSLLKLRQACCHP 509
L+N++++LR+ C HP
Sbjct: 1047 LMNTIMQLRKICNHP 1061
Score = 46 (21.3 bits), Expect = 9.5e-05, Sum P(5) = 9.5e-05
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 985 RMATTRLHLKEDDNDTSVDALSPDELASASVTNSSEKF 1022
R A + L+ ++ D D + DE + + S E+F
Sbjct: 1255 RRAFLQAILEHEEQDEEEDEVPDDETVNQMIARSEEEF 1292
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 108 (43.1 bits), Expect = 9.7e-05, Sum P(6) = 9.7e-05
Identities = 34/133 (25%), Positives = 59/133 (44%)
Query: 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
W + LDEA ++++ + + L +K R +TGTP+Q L +L+ L+ FL F
Sbjct: 658 WKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQS 717
Query: 382 SR----WWIEVIRDPYENGDV---GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVS 434
+ W+ I E + ++ H + + R K V E QLP + E V
Sbjct: 718 HQEFKDWFCNPIAGMVEGQEKINKEVIDRLHNVLRPFLLRRLKRDV--EKQLPSKHEHVI 775
Query: 435 WLTFSPIEEHFYQ 447
+ S + + Y+
Sbjct: 776 FCRLSKRQRNLYE 788
Score = 71 (30.1 bits), Expect = 9.7e-05, Sum P(6) = 9.7e-05
Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 83 GILADEMGLGKTVELLACIFAH 104
GILADEMGLGKT+ +A + AH
Sbjct: 557 GILADEMGLGKTIMTIA-LLAH 577
Score = 55 (24.4 bits), Expect = 9.7e-05, Sum P(6) = 9.7e-05
Identities = 18/69 (26%), Positives = 31/69 (44%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEG-ARNSSLSDTSIMDISELVGADIVL 280
G LIV P ++ W+ E + P + K Y G A+ L M ++ + +
Sbjct: 586 GPHLIVVPTSVMLNWETEFLKWC-P-AFKILTYFGSAKERKLKRQGWMKLNSF---HVCI 640
Query: 281 TTYDVLKED 289
TTY ++ +D
Sbjct: 641 TTYRLVIQD 649
Score = 55 (24.4 bits), Expect = 9.7e-05, Sum P(6) = 9.7e-05
Identities = 42/205 (20%), Positives = 84/205 (40%)
Query: 762 IEEAISGSLNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPK 821
I IS S + L+ A++ R + L IQ+ E +K LD +
Sbjct: 1195 IYRLISESTIEENILKKANQKRVLDNLV--IQNGEYNTEFFKK--LDPMELFSGHKALTT 1250
Query: 822 EEDMDRMRHCRICYGVGDGPICVHCELDESFQDYEARLFRLKKSQG--DIASAEEAVDLQ 879
+++ + +HC + + + + E DY A L R+++ + + EE V+
Sbjct: 1251 KDEKETSKHCGADIPLSNADVEAALKQAEDEADYMA-LKRVEQEEAVDNQEFTEEPVERP 1309
Query: 880 KKNSSLNRFYWYLSQP-NKNSTSSSVGNEEIK--RRDVR-ETVVVSKSPSELEV-ILGVI 934
+ + +N +P ++ ++ EE+ D+R E V++ S E + +L +
Sbjct: 1310 EDDELVNEDDIKADEPADQGLVAAGPAKEEMSLLHSDIRDERAVITTSSQEDDTDVLDDV 1369
Query: 935 KNYCKTQLGR-EAISASSKQLHILE 958
K +AIS+ QL ++
Sbjct: 1370 KQMAAAAADAGQAISSFENQLRPID 1394
Score = 42 (19.8 bits), Expect = 9.7e-05, Sum P(6) = 9.7e-05
Identities = 21/99 (21%), Positives = 40/99 (40%)
Query: 945 EAISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDEIRMATTRLHLKEDDNDTSVDA 1004
E + ++ H+L+ +K+ A + + L A + + ++ DD++
Sbjct: 1491 EMVLTQNESAHVLKPKKKKKAKKAKYKSLKKGSLAAESKHVKSVVKIEDSTDDDNEEFGY 1550
Query: 1005 LSPDELASASVTNSSEKFISMTLLSQVKGKLRYLKVSTE 1043
+S + S VT S +KGK R L V T+
Sbjct: 1551 VSSSD--SDMVTPLSRM--------HMKGKKRDLIVDTD 1579
Score = 40 (19.1 bits), Expect = 9.7e-05, Sum P(6) = 9.7e-05
Identities = 5/17 (29%), Positives = 13/17 (76%)
Query: 495 LLNSLLKLRQACCHPQV 511
+++ +++LR+ C HP +
Sbjct: 808 MISIIMQLRKVCNHPDL 824
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 112 (44.5 bits), Expect = 0.00011, Sum P(5) = 0.00011
Identities = 39/143 (27%), Positives = 64/143 (44%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFL 374
+L +I W + +DE ++++ T++ Y A R +TGTP+Q KL +L+ LL FL
Sbjct: 869 ILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFL 928
Query: 375 KSSPF----SISRWWIEVIRDPYENGDVGAMEFT------HKFFKEIMCRSSKVHVSDEL 424
+ F + +W+ E D+ E HK + + R K V E
Sbjct: 929 LPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEV--EA 986
Query: 425 QLPPQEECVSWLTFSPIEEHFYQ 447
QLP + E V S ++ Y+
Sbjct: 987 QLPEKVEYVIKCDMSALQRVLYR 1009
Score = 73 (30.8 bits), Expect = 0.00011, Sum P(5) = 0.00011
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A I
Sbjct: 775 GILADEMGLGKTIQTIALI 793
Score = 48 (22.0 bits), Expect = 0.00011, Sum P(5) = 0.00011
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 495 LLNSLLKLRQACCHP 509
L+N++++LR+ C HP
Sbjct: 1035 LMNTIMQLRKICNHP 1049
Score = 47 (21.6 bits), Expect = 0.00011, Sum P(5) = 0.00011
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+ P L+ W E + P +K Y+G+ + + + + +++LT
Sbjct: 804 GPFLIIVPLSTLSNWAYEFDKWA-PSVVKVS-YKGSPAARRAFVPQLRSGKF---NVLLT 858
Query: 282 TYDVLKED 289
TY+ + +D
Sbjct: 859 TYEYIIKD 866
Score = 44 (20.5 bits), Expect = 0.00011, Sum P(5) = 0.00011
Identities = 29/127 (22%), Positives = 48/127 (37%)
Query: 866 QGDIASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDVRETVVVSK-SP 924
+G + EE V +K + R S ST S +EE K++ R K SP
Sbjct: 1361 EGTLEEIEEEVRQKKSSRKRKRDSEAGSSTPTTSTRSRDKDEESKKQKKRGRPPAEKLSP 1420
Query: 925 S------ELEVILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYANARSLATAQAQFL 978
+ +++ I+ + Y + GR+ ++ I RKE L F
Sbjct: 1421 NPPNLTKKMKKIVDAVIKYKDSSSGRQL-----SEVFIQLPSRKELPEYYELIRKPVDFK 1475
Query: 979 RAHDEIR 985
+ + IR
Sbjct: 1476 KIKERIR 1482
Score = 41 (19.5 bits), Expect = 0.00021, Sum P(5) = 0.00021
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 985 RMATTRLHLKEDDNDTSVDALSPDELASASVTNSSEKF 1022
R A + L+ ++ D D + DE + + E+F
Sbjct: 1243 RRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEF 1280
>UNIPROTKB|F1PTH3 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 Ensembl:ENSCAFT00000014716
Uniprot:F1PTH3
Length = 2715
Score = 134 (52.2 bits), Expect = 0.00012, Sum P(6) = 0.00012
Identities = 37/133 (27%), Positives = 68/133 (51%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYA-KHRWCITGTPIQRKLDDLYGLLRFLK 375
L +I W + +DEA +++ E L+L A +H+ +TGTP+Q +++L+ LL FL+
Sbjct: 587 LKKIHWSCVIIDEAHRLKNRNCKLLE-GLKLMALEHKVLLTGTPLQNSVEELFSLLNFLE 645
Query: 376 SSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSW 435
S F ++E D V ++ K +M R K V E L P++E +
Sbjct: 646 PSQFPSETAFLEEFGDLKTEEQVKKLQ---SILKPMMLRRLKDDV--EKNLAPKQETIIE 700
Query: 436 LTFSPIEEHFYQS 448
+ + I++ +Y++
Sbjct: 701 VELTNIQKKYYRA 713
Score = 59 (25.8 bits), Expect = 0.00012, Sum P(6) = 0.00012
Identities = 11/13 (84%), Positives = 13/13 (100%)
Query: 84 ILADEMGLGKTVE 96
ILADEMGLGKT++
Sbjct: 483 ILADEMGLGKTIQ 495
Score = 50 (22.7 bits), Expect = 0.00012, Sum P(6) = 0.00012
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 756 AELIRKIE-EAISGSLNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEID 814
A LI + + ++GSL + A A+R R G H++ +D + +TL +LE+
Sbjct: 2262 AGLIHPVTGQIVNGSLRRDDA---ATRRRR--GRRKHVEGGMDLIFLKEQTLQAGILEVH 2316
Query: 815 Q 815
+
Sbjct: 2317 E 2317
Score = 49 (22.3 bits), Expect = 0.00012, Sum P(6) = 0.00012
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 495 LLNSLLKLRQACCHP 509
L+N++++LR+ C HP
Sbjct: 734 LINTMMELRKCCNHP 748
Score = 45 (20.9 bits), Expect = 0.00012, Sum P(6) = 0.00012
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNS 260
G LI+ P + W+ E T ++ +Y G++ S
Sbjct: 510 GPFLIIAPLSTITNWEREFRTWTEMNAI---VYHGSQIS 545
Score = 42 (19.8 bits), Expect = 0.00062, Sum P(6) = 0.00062
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 793 QSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVH 845
Q +D LE L+ L + QT +EE+ + + + G+ + P +H
Sbjct: 1844 QQLIDLLEDKS---LESKLALSQTHSDEEEEEENEEENVGVATGLRERPEVLH 1893
Score = 40 (19.1 bits), Expect = 0.00054, Sum P(5) = 0.00054
Identities = 20/101 (19%), Positives = 38/101 (37%)
Query: 880 KKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDVRETVVVSKSPSELEVILGVIKN--Y 937
K + + F W L P K+ + ++ N V K+ ++L +L +KN +
Sbjct: 1146 KGDEKIKSFIWELITPTKDGQAQTLQNHSGLSAPVPRGRKGKKTKNQL--LLPELKNADW 1203
Query: 938 CKTQLGREAISASSKQLHILEAMRKEYANARSLATAQAQFL 978
T + + H+ + K R L +A+ L
Sbjct: 1204 LATCNPEVVLHDDGYKKHLKQHCNKVLLRVRMLYYLKAEIL 1244
Score = 39 (18.8 bits), Expect = 0.00012, Sum P(6) = 0.00012
Identities = 23/90 (25%), Positives = 40/90 (44%)
Query: 587 RLDPLLNIHLHHNLTEILPMVANCATE-LSQNEQHFPGCSEKAFKIHS-IETCDENARKC 644
RL L+ ++ N E+ C E L Q + E+ F+ S ++ ++ A+K
Sbjct: 1397 RLRRLVTVYQRCNRKEL------CRPEILGPGNQGY-WVQEEMFRRTSEMDLINKEAQK- 1448
Query: 645 QRVSREENSDFTDAEDPSGHLSDLSENGFN 674
R +R E +DF A G + D + F+
Sbjct: 1449 -RWTRREQADFYRAVSSFGVVYDQEKKTFD 1477
>UNIPROTKB|J9P0F6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 CTD:84181 KO:K14436 GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 RefSeq:XP_534421.3
Ensembl:ENSCAFT00000048852 GeneID:477230 KEGG:cfa:477230
Uniprot:J9P0F6
Length = 2715
Score = 134 (52.2 bits), Expect = 0.00012, Sum P(6) = 0.00012
Identities = 37/133 (27%), Positives = 68/133 (51%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYA-KHRWCITGTPIQRKLDDLYGLLRFLK 375
L +I W + +DEA +++ E L+L A +H+ +TGTP+Q +++L+ LL FL+
Sbjct: 587 LKKIHWSCVIIDEAHRLKNRNCKLLE-GLKLMALEHKVLLTGTPLQNSVEELFSLLNFLE 645
Query: 376 SSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSW 435
S F ++E D V ++ K +M R K V E L P++E +
Sbjct: 646 PSQFPSETAFLEEFGDLKTEEQVKKLQ---SILKPMMLRRLKDDV--EKNLAPKQETIIE 700
Query: 436 LTFSPIEEHFYQS 448
+ + I++ +Y++
Sbjct: 701 VELTNIQKKYYRA 713
Score = 59 (25.8 bits), Expect = 0.00012, Sum P(6) = 0.00012
Identities = 11/13 (84%), Positives = 13/13 (100%)
Query: 84 ILADEMGLGKTVE 96
ILADEMGLGKT++
Sbjct: 483 ILADEMGLGKTIQ 495
Score = 50 (22.7 bits), Expect = 0.00012, Sum P(6) = 0.00012
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 756 AELIRKIE-EAISGSLNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEID 814
A LI + + ++GSL + A A+R R G H++ +D + +TL +LE+
Sbjct: 2262 AGLIHPVTGQIVNGSLRRDDA---ATRRRR--GRRKHVEGGMDLIFLKEQTLQAGILEVH 2316
Query: 815 Q 815
+
Sbjct: 2317 E 2317
Score = 49 (22.3 bits), Expect = 0.00012, Sum P(6) = 0.00012
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 495 LLNSLLKLRQACCHP 509
L+N++++LR+ C HP
Sbjct: 734 LINTMMELRKCCNHP 748
Score = 45 (20.9 bits), Expect = 0.00012, Sum P(6) = 0.00012
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNS 260
G LI+ P + W+ E T ++ +Y G++ S
Sbjct: 510 GPFLIIAPLSTITNWEREFRTWTEMNAI---VYHGSQIS 545
Score = 42 (19.8 bits), Expect = 0.00062, Sum P(6) = 0.00062
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 793 QSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVH 845
Q +D LE L+ L + QT +EE+ + + + G+ + P +H
Sbjct: 1844 QQLIDLLEDKS---LESKLALSQTHSDEEEEEENEEENVGVATGLRERPEVLH 1893
Score = 40 (19.1 bits), Expect = 0.00054, Sum P(5) = 0.00054
Identities = 20/101 (19%), Positives = 38/101 (37%)
Query: 880 KKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDVRETVVVSKSPSELEVILGVIKN--Y 937
K + + F W L P K+ + ++ N V K+ ++L +L +KN +
Sbjct: 1146 KGDEKIKSFIWELITPTKDGQAQTLQNHSGLSAPVPRGRKGKKTKNQL--LLPELKNADW 1203
Query: 938 CKTQLGREAISASSKQLHILEAMRKEYANARSLATAQAQFL 978
T + + H+ + K R L +A+ L
Sbjct: 1204 LATCNPEVVLHDDGYKKHLKQHCNKVLLRVRMLYYLKAEIL 1244
Score = 39 (18.8 bits), Expect = 0.00012, Sum P(6) = 0.00012
Identities = 23/90 (25%), Positives = 40/90 (44%)
Query: 587 RLDPLLNIHLHHNLTEILPMVANCATE-LSQNEQHFPGCSEKAFKIHS-IETCDENARKC 644
RL L+ ++ N E+ C E L Q + E+ F+ S ++ ++ A+K
Sbjct: 1397 RLRRLVTVYQRCNRKEL------CRPEILGPGNQGY-WVQEEMFRRTSEMDLINKEAQK- 1448
Query: 645 QRVSREENSDFTDAEDPSGHLSDLSENGFN 674
R +R E +DF A G + D + F+
Sbjct: 1449 -RWTRREQADFYRAVSSFGVVYDQEKKTFD 1477
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 112 (44.5 bits), Expect = 0.00012, Sum P(5) = 0.00012
Identities = 39/143 (27%), Positives = 64/143 (44%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFL 374
+L +I W + +DE ++++ T++ Y A R +TGTP+Q KL +L+ LL FL
Sbjct: 668 ILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFL 727
Query: 375 KSSPF----SISRWWIEVIRDPYENGDVGAMEFT------HKFFKEIMCRSSKVHVSDEL 424
+ F + +W+ E D+ E HK + + R K V E
Sbjct: 728 LPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEV--EA 785
Query: 425 QLPPQEECVSWLTFSPIEEHFYQ 447
QLP + E V S ++ Y+
Sbjct: 786 QLPEKVEYVIKCDMSALQRVLYR 808
Score = 73 (30.8 bits), Expect = 0.00012, Sum P(5) = 0.00012
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A I
Sbjct: 574 GILADEMGLGKTIQTIALI 592
Score = 48 (22.0 bits), Expect = 0.00012, Sum P(5) = 0.00012
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 495 LLNSLLKLRQACCHP 509
L+N++++LR+ C HP
Sbjct: 834 LMNTIMQLRKICNHP 848
Score = 47 (21.6 bits), Expect = 0.00012, Sum P(5) = 0.00012
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+ P L+ W E + P +K Y+G+ + + + + +++LT
Sbjct: 603 GPFLIIVPLSTLSNWAYEFDKWA-PSVVKVS-YKGSPAARRAFVPQLRSGKF---NVLLT 657
Query: 282 TYDVLKED 289
TY+ + +D
Sbjct: 658 TYEYIIKD 665
Score = 38 (18.4 bits), Expect = 0.00012, Sum P(5) = 0.00012
Identities = 24/83 (28%), Positives = 36/83 (43%)
Query: 847 ELDESFQDYEAR-LFRLKKS--QGDIASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSS 903
E+D S E + L +LK + +G + EE V +K + R S ST S
Sbjct: 1175 EVDYSDSLTEKQWLKQLKAAIEEGTLEEIEEEVRQKKSSRKRKRDSEAGSSTPTTSTRSR 1234
Query: 904 VGNEEIKRRDVRETVVVSK-SPS 925
+EE K++ R K SP+
Sbjct: 1235 DKDEESKKQKKRGRPPAEKLSPN 1257
>MGI|MGI:1924001 [details] [associations]
symbol:Chd9 "chromodomain helicase DNA binding protein 9"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
MGI:MGI:1924001 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077 CTD:80205
KO:K14438 OMA:MWGHQTA EMBL:DQ127229 EMBL:AK034446 EMBL:AK039562
EMBL:AK084000 EMBL:AB093226 EMBL:BC052896 IPI:IPI00229650
IPI:IPI00758139 RefSeq:NP_796198.1 UniGene:Mm.100615
ProteinModelPortal:Q8BYH8 SMR:Q8BYH8 STRING:Q8BYH8
PhosphoSite:Q8BYH8 PaxDb:Q8BYH8 PRIDE:Q8BYH8
Ensembl:ENSMUST00000048665 Ensembl:ENSMUST00000109614 GeneID:109151
KEGG:mmu:109151 UCSC:uc009msf.2 UCSC:uc009msi.2 InParanoid:Q8BYH8
OrthoDB:EOG4548XQ ChiTaRS:CHD9 NextBio:361700 Bgee:Q8BYH8
CleanEx:MM_CHD9 Genevestigator:Q8BYH8 Uniprot:Q8BYH8
Length = 2885
Score = 120 (47.3 bits), Expect = 0.00012, Sum P(5) = 0.00012
Identities = 36/135 (26%), Positives = 66/135 (48%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L I W + +DEA +++ E + +H+ +TGTP+Q +++L+ LL FL+
Sbjct: 985 LNAIDWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEP 1044
Query: 377 SPFSISRWWIEVIRDPYENGDVGAMEFTHKF---FKEIMCRSSKVHVSDELQLPPQEECV 433
F +++ E GD+ E K K +M R K V E +L P+EE +
Sbjct: 1045 LRFPSESTFMQ------EFGDLKTEEQVQKLQAILKPMMLRRLKEDV--EKKLAPKEETI 1096
Query: 434 SWLTFSPIEEHFYQS 448
+ + I++ +Y++
Sbjct: 1097 IEVELTNIQKKYYRA 1111
Score = 62 (26.9 bits), Expect = 0.00012, Sum P(5) = 0.00012
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 84 ILADEMGLGKTVELLACIF 102
ILADEMGLGKT++ + ++
Sbjct: 881 ILADEMGLGKTIQSITFLY 899
Score = 59 (25.8 bits), Expect = 0.00012, Sum P(5) = 0.00012
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 620 HFPGCSEK-AFKIHSIETCDENARKCQRVSREENSDFTDAEDPSG-HLSDLSEN 671
H P S+ AF + ++ D ++ K + +EENS D E+ G S L+EN
Sbjct: 2804 HLPTLSQSNAFDVQKNKSDDLDSSKSVEI-KEENSRVRDQEEKGGTEPSPLNEN 2856
Score = 48 (22.0 bits), Expect = 0.00012, Sum P(5) = 0.00012
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 495 LLNSLLKLRQACCHP 509
L+N++++LR+ C HP
Sbjct: 1132 LVNTMMELRKCCNHP 1146
Score = 47 (21.6 bits), Expect = 0.00012, Sum P(5) = 0.00012
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGA 257
G LI+ P +A W+ E T + +Y G+
Sbjct: 908 GPFLIIAPLSTIANWEREFRTWT---DINVVVYHGS 940
>UNIPROTKB|F1NS62 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:AADN02037964
EMBL:AADN02037962 EMBL:AADN02037963 IPI:IPI00573125
Ensembl:ENSGALT00000024254 Uniprot:F1NS62
Length = 895
Score = 103 (41.3 bits), Expect = 0.00013, Sum P(5) = 0.00013
Identities = 33/129 (25%), Positives = 58/129 (44%)
Query: 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
W + +DEA +++ + E L +TGTPIQ L +LY LL F++ F
Sbjct: 168 WAALVVDEAHRLKNQNSLLYETLTELPVGFSLLLTGTPIQNSLQELYSLLSFIEPDIFPR 227
Query: 382 S--RWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ ++E + E A E H + + R K V+ +L P + E V + S
Sbjct: 228 KQVKEFVEYYQ-AVEKESEPAKEL-HNLLQPFLLRRVKSEVTADL--PKKVEVVLYHGMS 283
Query: 440 PIEEHFYQS 448
++ +Y++
Sbjct: 284 ALQRKYYKA 292
Score = 77 (32.2 bits), Expect = 0.00013, Sum P(5) = 0.00013
Identities = 23/85 (27%), Positives = 37/85 (43%)
Query: 205 CQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSD 264
CQ L+ T +LI+CP +L+ W E+ R PG L Y G +
Sbjct: 79 CQTISLLLYLTKKLTNKERSLILCPLSVLSNWKEELERFA-PG-LSFVTYVGNKEERYKL 136
Query: 265 TSIMDISELVGADIVLTTYDVLKED 289
++ E ++LTTY++ +D
Sbjct: 137 QQ--NLKEQSHFRVLLTTYEICLKD 159
Score = 51 (23.0 bits), Expect = 0.00013, Sum P(5) = 0.00013
Identities = 22/77 (28%), Positives = 36/77 (46%)
Query: 749 EGNKDFSAELIRKIEEAISGSLNKSRAL--RTASRYRSISGLTYHIQSSLDQLEASRKTL 806
EG KD+S E R+ ++A L+ +AL T+ R++ + + L RK L
Sbjct: 575 EG-KDYSKEPSREDKKAFDQLLDLQKALIEETSKEGRALRNKANTLLTGLRDQSTRRKHL 633
Query: 807 LDRLLEIDQTMEKPKEE 823
L E +T K ++E
Sbjct: 634 LSA--EELETRRKKRQE 648
Score = 40 (19.1 bits), Expect = 0.00013, Sum P(5) = 0.00013
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 14 RPYQRRAAYWMVQ 26
RPYQ W+VQ
Sbjct: 47 RPYQLDGVNWLVQ 59
Score = 39 (18.8 bits), Expect = 0.00013, Sum P(5) = 0.00013
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 495 LLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGK 536
L N L++LR+ HP + ++ P + + ++ GK
Sbjct: 311 LQNVLIQLRKCVAHPYL----FNGVEPEPFEIGDHIVEASGK 348
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 111 (44.1 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 39/143 (27%), Positives = 65/143 (45%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFL 374
+L +I W + +DE ++++ T++ Y A R +TGTP+Q KL +L+ LL FL
Sbjct: 846 ILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFL 905
Query: 375 KSSPF----SISRWWIEVIRDPYENGDVGAMEFT------HKFFKEIMCRSSKVHVSDEL 424
+ F + +W+ E D+ E HK + + R K V E
Sbjct: 906 LPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEV--ES 963
Query: 425 QLPPQEECVSWLTFSPIEEHFYQ 447
QLP + E V S +++ Y+
Sbjct: 964 QLPEKVEYVIKCDMSALQKILYR 986
Score = 73 (30.8 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A I
Sbjct: 752 GILADEMGLGKTIQTIALI 770
Score = 50 (22.7 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 492 AAKLLNSLLKLRQACCHP 509
A L+N++++LR+ C HP
Sbjct: 1009 AKTLMNTIMQLRKICNHP 1026
Score = 46 (21.3 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+ P L+ W E + P +K Y+G S + + +++LT
Sbjct: 781 GPYLIIVPLSTLSNWTYEFDKWA-PSVVKIS-YKGTPAMRRSLVPQLRSGKF---NVLLT 835
Query: 282 TYDVLKED 289
TY+ + +D
Sbjct: 836 TYEYIIKD 843
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 111 (44.1 bits), Expect = 0.00015, Sum P(4) = 0.00015
Identities = 39/143 (27%), Positives = 65/143 (45%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFL 374
+L +I W + +DE ++++ T++ Y A R +TGTP+Q KL +L+ LL FL
Sbjct: 813 ILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFL 872
Query: 375 KSSPF----SISRWWIEVIRDPYENGDVGAMEFT------HKFFKEIMCRSSKVHVSDEL 424
+ F + +W+ E D+ E HK + + R K V E
Sbjct: 873 LPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEV--ES 930
Query: 425 QLPPQEECVSWLTFSPIEEHFYQ 447
QLP + E V S +++ Y+
Sbjct: 931 QLPEKVEYVIKCDMSALQKILYR 953
Score = 73 (30.8 bits), Expect = 0.00015, Sum P(4) = 0.00015
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A I
Sbjct: 719 GILADEMGLGKTIQTIALI 737
Score = 50 (22.7 bits), Expect = 0.00015, Sum P(4) = 0.00015
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 492 AAKLLNSLLKLRQACCHP 509
A L+N++++LR+ C HP
Sbjct: 976 AKTLMNTIMQLRKICNHP 993
Score = 46 (21.3 bits), Expect = 0.00015, Sum P(4) = 0.00015
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+ P L+ W E + P +K Y+G S + + +++LT
Sbjct: 748 GPYLIIVPLSTLSNWTYEFDKWA-PSVVKIS-YKGTPAMRRSLVPQLRSGKF---NVLLT 802
Query: 282 TYDVLKED 289
TY+ + +D
Sbjct: 803 TYEYIIKD 810
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 111 (44.1 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 39/143 (27%), Positives = 65/143 (45%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFL 374
+L +I W + +DE ++++ T++ Y A R +TGTP+Q KL +L+ LL FL
Sbjct: 821 ILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFL 880
Query: 375 KSSPF----SISRWWIEVIRDPYENGDVGAMEFT------HKFFKEIMCRSSKVHVSDEL 424
+ F + +W+ E D+ E HK + + R K V E
Sbjct: 881 LPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEV--ES 938
Query: 425 QLPPQEECVSWLTFSPIEEHFYQ 447
QLP + E V S +++ Y+
Sbjct: 939 QLPEKVEYVIKCDMSALQKILYR 961
Score = 73 (30.8 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A I
Sbjct: 727 GILADEMGLGKTIQTIALI 745
Score = 50 (22.7 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 492 AAKLLNSLLKLRQACCHP 509
A L+N++++LR+ C HP
Sbjct: 984 AKTLMNTIMQLRKICNHP 1001
Score = 46 (21.3 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+ P L+ W E + P +K Y+G S + + +++LT
Sbjct: 756 GPYLIIVPLSTLSNWTYEFDKWA-PSVVKIS-YKGTPAMRRSLVPQLRSGKF---NVLLT 810
Query: 282 TYDVLKED 289
TY+ + +D
Sbjct: 811 TYEYIIKD 818
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 111 (44.1 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 39/143 (27%), Positives = 65/143 (45%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFL 374
+L +I W + +DE ++++ T++ Y A R +TGTP+Q KL +L+ LL FL
Sbjct: 823 ILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFL 882
Query: 375 KSSPF----SISRWWIEVIRDPYENGDVGAMEFT------HKFFKEIMCRSSKVHVSDEL 424
+ F + +W+ E D+ E HK + + R K V E
Sbjct: 883 LPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEV--ES 940
Query: 425 QLPPQEECVSWLTFSPIEEHFYQ 447
QLP + E V S +++ Y+
Sbjct: 941 QLPEKVEYVIKCDMSALQKILYR 963
Score = 73 (30.8 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A I
Sbjct: 729 GILADEMGLGKTIQTIALI 747
Score = 50 (22.7 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 492 AAKLLNSLLKLRQACCHP 509
A L+N++++LR+ C HP
Sbjct: 986 AKTLMNTIMQLRKICNHP 1003
Score = 46 (21.3 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+ P L+ W E + P +K Y+G S + + +++LT
Sbjct: 758 GPYLIIVPLSTLSNWTYEFDKWA-PSVVKIS-YKGTPAMRRSLVPQLRSGKF---NVLLT 812
Query: 282 TYDVLKED 289
TY+ + +D
Sbjct: 813 TYEYIIKD 820
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 111 (44.1 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 39/143 (27%), Positives = 65/143 (45%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFL 374
+L +I W + +DE ++++ T++ Y A R +TGTP+Q KL +L+ LL FL
Sbjct: 823 ILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFL 882
Query: 375 KSSPF----SISRWWIEVIRDPYENGDVGAMEFT------HKFFKEIMCRSSKVHVSDEL 424
+ F + +W+ E D+ E HK + + R K V E
Sbjct: 883 LPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEV--ES 940
Query: 425 QLPPQEECVSWLTFSPIEEHFYQ 447
QLP + E V S +++ Y+
Sbjct: 941 QLPEKVEYVIKCDMSALQKILYR 963
Score = 73 (30.8 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A I
Sbjct: 729 GILADEMGLGKTIQTIALI 747
Score = 50 (22.7 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 492 AAKLLNSLLKLRQACCHP 509
A L+N++++LR+ C HP
Sbjct: 986 AKTLMNTIMQLRKICNHP 1003
Score = 46 (21.3 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+ P L+ W E + P +K Y+G S + + +++LT
Sbjct: 758 GPYLIIVPLSTLSNWTYEFDKWA-PSVVKIS-YKGTPAMRRSLVPQLRSGKF---NVLLT 812
Query: 282 TYDVLKED 289
TY+ + +D
Sbjct: 813 TYEYIIKD 820
>ZFIN|ZDB-GENE-030131-5964 [details] [associations]
symbol:smarca2 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily a,
member 2" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 ZFIN:ZDB-GENE-030131-5964 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 CTD:6595
HOVERGEN:HBG056636 EMBL:BC060676 IPI:IPI00483012 RefSeq:NP_997881.1
UniGene:Dr.93531 ProteinModelPortal:Q6P9P2 SMR:Q6P9P2 STRING:Q6P9P2
GeneID:334032 KEGG:dre:334032 InParanoid:Q6P9P2 NextBio:20810237
ArrayExpress:Q6P9P2 Uniprot:Q6P9P2
Length = 1568
Score = 114 (45.2 bits), Expect = 0.00016, Sum P(6) = 0.00016
Identities = 40/143 (27%), Positives = 65/143 (45%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFL 374
+L +I W + +DE ++++ T++ Y A R +TGTP+Q KL +L+ LL FL
Sbjct: 841 ILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFL 900
Query: 375 KSSPF----SISRWWIEVIRDPYENGDVGAMEFT------HKFFKEIMCRSSKVHVSDEL 424
+ F + +W+ E D+ E HK + + R K V E
Sbjct: 901 LPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEV--ES 958
Query: 425 QLPPQEECVSWLTFSPIEEHFYQ 447
QLP + E V S I++ Y+
Sbjct: 959 QLPEKVEYVIKCDMSAIQKVLYR 981
Score = 69 (29.3 bits), Expect = 0.00016, Sum P(6) = 0.00016
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ + I
Sbjct: 747 GILADEMGLGKTIQTIGLI 765
Score = 48 (22.0 bits), Expect = 0.00016, Sum P(6) = 0.00016
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+ P L+ W E+ + P +K Y+G + S + + ++++T
Sbjct: 776 GPYLIIVPLSTLSNWVYELDKWA-PSIVKIA-YKGTPSMRRSLVPQLRSGKF---NVLIT 830
Query: 282 TYDVLKED 289
TY+ + +D
Sbjct: 831 TYEYIIKD 838
Score = 47 (21.6 bits), Expect = 0.00016, Sum P(6) = 0.00016
Identities = 7/18 (38%), Positives = 14/18 (77%)
Query: 492 AAKLLNSLLKLRQACCHP 509
A L+N++++L++ C HP
Sbjct: 1004 AKTLMNTIMQLKKICNHP 1021
Score = 45 (20.9 bits), Expect = 0.00016, Sum P(6) = 0.00016
Identities = 10/38 (26%), Positives = 24/38 (63%)
Query: 634 IETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSEN 671
+++ ++AR Q+++REE+ D +D +D + S++
Sbjct: 1479 LQSVFKSAR--QKIAREESDDESDDDDEEDESEEESKS 1514
Score = 38 (18.4 bits), Expect = 0.00016, Sum P(6) = 0.00016
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 50 PMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGG 83
P +D +S + +P + P++ S + GG
Sbjct: 109 PQSPMDQHSQGYMSPHPSPMGQVPEHVPSPMSGG 142
>UNIPROTKB|J9NZH0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:AAEX03026896
Ensembl:ENSCAFT00000048721 Uniprot:J9NZH0
Length = 850
Score = 131 (51.2 bits), Expect = 0.00016, P = 0.00016
Identities = 35/127 (27%), Positives = 61/127 (48%)
Query: 321 FWWR-ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379
F WR + +DEA +++ + +E+ + +R +TGTP+Q L +L+ LL FL F
Sbjct: 95 FHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVF 154
Query: 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFS 439
+ + + GD +E H K + R K V E LPP++E +L S
Sbjct: 155 NSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDV--EKSLPPKKEIKVYLGLS 212
Query: 440 PIEEHFY 446
++ ++
Sbjct: 213 KMQREWF 219
>ASPGD|ASPL0000018137 [details] [associations]
symbol:AN4187 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005576
"extracellular region" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 EMBL:BN001302
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 EMBL:AACD01000068 OrthoDB:EOG44XNQZ
RefSeq:XP_661791.1 ProteinModelPortal:Q5B5J3 STRING:Q5B5J3
EnsemblFungi:CADANIAT00004481 GeneID:2873610 KEGG:ani:AN4187.2
Uniprot:Q5B5J3
Length = 1904
Score = 97 (39.2 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 31/119 (26%), Positives = 52/119 (43%)
Query: 323 WRIC-LDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381
W C LDE ++++ A T R+ + HR ++GTPIQ + +L+ L FL
Sbjct: 1448 WNYCVLDEGHLIKNPKAKVTMAVKRINSNHRLILSGTPIQNNVLELWSLFDFLMPGFLGT 1507
Query: 382 SRWWIEVIRDPYENG---------DVGAM--EFTHKFFKEIMCRSSKVHVSDELQLPPQ 429
+ +++ P + GA+ E HK + R K V ++L PP+
Sbjct: 1508 EKVFLDRFAKPIATSRFSKSSKEQEAGALAIEALHKQVLPFLLRRLKEEVLNDL--PPK 1564
Score = 76 (31.8 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 224 TLIVCPAPILAQWDAEITRHTRPGSLKTCI-YEG--ARNSSLSDTSIMDISELVGADIVL 280
+LI+CP + W E+ ++ P C+ Y G A S L + L ADIV+
Sbjct: 1381 SLIICPPSLSGHWQQEVKQYA-P--FLNCVAYVGPPAERSKLQGS-------LADADIVV 1430
Query: 281 TTYDVLKED 289
T+YD+ + D
Sbjct: 1431 TSYDICRND 1439
Score = 72 (30.4 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 75 YTSSYVFGGILADEMGLGKTVELLACIFA--HRKPASD 110
+ + Y GIL D+MGLGKT++ + CI A H A D
Sbjct: 1331 FLNRYNLHGILCDDMGLGKTLQTI-CIVASDHHMRAED 1367
Score = 39 (18.8 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 623 GCSEKAFKIHSIETCDENARKCQR---VSREENSDFTDAE----DPSGHLSDLS 669
G SEKA K H + R C V +E + + + + + +L D+S
Sbjct: 1597 GSSEKADKEHIFQALQYMRRLCNSPALVVKEGHKQYNEVQQYLQEKKSYLRDVS 1650
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 111 (44.1 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 39/143 (27%), Positives = 65/143 (45%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFL 374
+L +I W + +DE ++++ T++ Y A R +TGTP+Q KL +L+ LL FL
Sbjct: 823 ILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFL 882
Query: 375 KSSPF----SISRWWIEVIRDPYENGDVGAMEFT------HKFFKEIMCRSSKVHVSDEL 424
+ F + +W+ E D+ E HK + + R K V E
Sbjct: 883 LPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEV--ES 940
Query: 425 QLPPQEECVSWLTFSPIEEHFYQ 447
QLP + E V S +++ Y+
Sbjct: 941 QLPEKVEYVIKCDMSALQKILYR 963
Score = 73 (30.8 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A I
Sbjct: 729 GILADEMGLGKTIQTIALI 747
Score = 50 (22.7 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 492 AAKLLNSLLKLRQACCHP 509
A L+N++++LR+ C HP
Sbjct: 986 AKTLMNTIMQLRKICNHP 1003
Score = 46 (21.3 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+ P L+ W E + P +K Y+G S + + +++LT
Sbjct: 758 GPYLIIVPLSTLSNWTYEFDKWA-PSVVKIS-YKGTPAMRRSLVPQLRSGKF---NVLLT 812
Query: 282 TYDVLKED 289
TY+ + +D
Sbjct: 813 TYEYIIKD 820
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 111 (44.1 bits), Expect = 0.00017, Sum P(4) = 0.00017
Identities = 39/143 (27%), Positives = 65/143 (45%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFL 374
+L +I W + +DE ++++ T++ Y A R +TGTP+Q KL +L+ LL FL
Sbjct: 844 ILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFL 903
Query: 375 KSSPF----SISRWWIEVIRDPYENGDVGAMEFT------HKFFKEIMCRSSKVHVSDEL 424
+ F + +W+ E D+ E HK + + R K V E
Sbjct: 904 LPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEV--ES 961
Query: 425 QLPPQEECVSWLTFSPIEEHFYQ 447
QLP + E V S +++ Y+
Sbjct: 962 QLPEKVEYVIKCDMSALQKILYR 984
Score = 73 (30.8 bits), Expect = 0.00017, Sum P(4) = 0.00017
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A I
Sbjct: 750 GILADEMGLGKTIQTIALI 768
Score = 50 (22.7 bits), Expect = 0.00017, Sum P(4) = 0.00017
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 492 AAKLLNSLLKLRQACCHP 509
A L+N++++LR+ C HP
Sbjct: 1007 AKTLMNTIMQLRKICNHP 1024
Score = 46 (21.3 bits), Expect = 0.00017, Sum P(4) = 0.00017
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+ P L+ W E + P +K Y+G S + + +++LT
Sbjct: 779 GPYLIIVPLSTLSNWTYEFDKWA-PSVVKIS-YKGTPAMRRSLVPQLRSGKF---NVLLT 833
Query: 282 TYDVLKED 289
TY+ + +D
Sbjct: 834 TYEYIIKD 841
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 112 (44.5 bits), Expect = 0.00017, Sum P(5) = 0.00017
Identities = 39/143 (27%), Positives = 64/143 (44%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFL 374
+L +I W + +DE ++++ T++ Y A R +TGTP+Q KL +L+ LL FL
Sbjct: 869 ILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFL 928
Query: 375 KSSPF----SISRWWIEVIRDPYENGDVGAMEFT------HKFFKEIMCRSSKVHVSDEL 424
+ F + +W+ E D+ E HK + + R K V E
Sbjct: 929 LPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEV--EA 986
Query: 425 QLPPQEECVSWLTFSPIEEHFYQ 447
QLP + E V S ++ Y+
Sbjct: 987 QLPEKVEYVIKCDMSALQRVLYR 1009
Score = 73 (30.8 bits), Expect = 0.00017, Sum P(5) = 0.00017
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A I
Sbjct: 775 GILADEMGLGKTIQTIALI 793
Score = 48 (22.0 bits), Expect = 0.00017, Sum P(5) = 0.00017
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 495 LLNSLLKLRQACCHP 509
L+N++++LR+ C HP
Sbjct: 1035 LMNTIMQLRKICNHP 1049
Score = 47 (21.6 bits), Expect = 0.00017, Sum P(5) = 0.00017
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+ P L+ W E + P +K Y+G+ + + + + +++LT
Sbjct: 804 GPFLIIVPLSTLSNWAYEFDKWA-PSVVKVS-YKGSPAARRAFVPQLRSGKF---NVLLT 858
Query: 282 TYDVLKED 289
TY+ + +D
Sbjct: 859 TYEYIIKD 866
Score = 42 (19.8 bits), Expect = 0.00017, Sum P(5) = 0.00017
Identities = 30/127 (23%), Positives = 48/127 (37%)
Query: 866 QGDIASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDVRETVVVSK-SP 924
+G + EE V +K + R S ST S +EE K++ R K SP
Sbjct: 1361 EGTLEEIEEEVRQKKSSRKRKRDSEAGSSTPTTSTRSRDKDEESKKQKKRGRPPAEKLSP 1420
Query: 925 S------ELEVILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYANARSLATAQAQFL 978
+ +++ I+ + Y K GR+ ++ I RKE L F
Sbjct: 1421 NPPNLTKKMKKIVDAVIKY-KDSSGRQL-----SEVFIQLPSRKELPEYYELIRKPVDFK 1474
Query: 979 RAHDEIR 985
+ + IR
Sbjct: 1475 KIKERIR 1481
Score = 41 (19.5 bits), Expect = 0.00021, Sum P(5) = 0.00021
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 985 RMATTRLHLKEDDNDTSVDALSPDELASASVTNSSEKF 1022
R A + L+ ++ D D + DE + + E+F
Sbjct: 1243 RRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEF 1280
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 112 (44.5 bits), Expect = 0.00017, Sum P(5) = 0.00017
Identities = 39/143 (27%), Positives = 64/143 (44%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFL 374
+L +I W + +DE ++++ T++ Y A R +TGTP+Q KL +L+ LL FL
Sbjct: 869 ILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFL 928
Query: 375 KSSPF----SISRWWIEVIRDPYENGDVGAMEFT------HKFFKEIMCRSSKVHVSDEL 424
+ F + +W+ E D+ E HK + + R K V E
Sbjct: 929 LPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEV--EA 986
Query: 425 QLPPQEECVSWLTFSPIEEHFYQ 447
QLP + E V S ++ Y+
Sbjct: 987 QLPEKVEYVIKCDMSALQRVLYR 1009
Score = 73 (30.8 bits), Expect = 0.00017, Sum P(5) = 0.00017
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A I
Sbjct: 775 GILADEMGLGKTIQTIALI 793
Score = 48 (22.0 bits), Expect = 0.00017, Sum P(5) = 0.00017
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 495 LLNSLLKLRQACCHP 509
L+N++++LR+ C HP
Sbjct: 1035 LMNTIMQLRKICNHP 1049
Score = 47 (21.6 bits), Expect = 0.00017, Sum P(5) = 0.00017
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+ P L+ W E + P +K Y+G+ + + + + +++LT
Sbjct: 804 GPFLIIVPLSTLSNWAYEFDKWA-PSVVKVS-YKGSPAARRAFVPQLRSGKF---NVLLT 858
Query: 282 TYDVLKED 289
TY+ + +D
Sbjct: 859 TYEYIIKD 866
Score = 42 (19.8 bits), Expect = 0.00017, Sum P(5) = 0.00017
Identities = 30/127 (23%), Positives = 48/127 (37%)
Query: 866 QGDIASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDVRETVVVSK-SP 924
+G + EE V +K + R S ST S +EE K++ R K SP
Sbjct: 1361 EGTLEEIEEEVRQKKSSRKRKRDSEAGSSTPTTSTRSRDKDEESKKQKKRGRPPAEKLSP 1420
Query: 925 S------ELEVILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYANARSLATAQAQFL 978
+ +++ I+ + Y K GR+ ++ I RKE L F
Sbjct: 1421 NPPNLTKKMKKIVDAVIKY-KDSSGRQL-----SEVFIQLPSRKELPEYYELIRKPVDFK 1474
Query: 979 RAHDEIR 985
+ + IR
Sbjct: 1475 KIKERIR 1481
Score = 41 (19.5 bits), Expect = 0.00021, Sum P(5) = 0.00021
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 985 RMATTRLHLKEDDNDTSVDALSPDELASASVTNSSEKF 1022
R A + L+ ++ D D + DE + + E+F
Sbjct: 1243 RRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEF 1280
>UNIPROTKB|Q5T890 [details] [associations]
symbol:RAD26L "Putative DNA repair and recombination
protein RAD26-like" species:9606 "Homo sapiens" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005815
"microtubule organizing center" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006281
GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH471174 EMBL:AL161454
EMBL:BC035183 EMBL:BC140702 EMBL:AL389953 IPI:IPI00641648
IPI:IPI00873984 RefSeq:NP_001010895.1 UniGene:Hs.432364
UniGene:Hs.732570 ProteinModelPortal:Q5T890 SMR:Q5T890
IntAct:Q5T890 PhosphoSite:Q5T890 DMDM:74756405 PRIDE:Q5T890
DNASU:375748 Ensembl:ENST00000288985 Ensembl:ENST00000426805
Ensembl:ENST00000437817 GeneID:375748 KEGG:hsa:375748
UCSC:uc004avt.4 UCSC:uc010mrz.3 CTD:375748 HGNC:HGNC:26922
neXtProt:NX_Q5T890 PharmGKB:PA134961240 HOGENOM:HOG000074171
HOVERGEN:HBG108393 InParanoid:Q5T890 OMA:HGNRKDN OrthoDB:EOG41G33K
ChiTaRS:ERCC6L2 GenomeRNAi:375748 NextBio:100596
ArrayExpress:Q5T890 Bgee:Q5T890 CleanEx:HS_C9orf102
Genevestigator:Q5T890 Uniprot:Q5T890
Length = 712
Score = 91 (37.1 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 34/148 (22%), Positives = 65/148 (43%)
Query: 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376
L + W + +DEA +++ A TE+ L R +TGT +Q + +L+ ++ +
Sbjct: 272 LNSLEWSAVIVDEAHRIKNPKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVP 331
Query: 377 SPFSISRWWIEVIRDPYENGD----------VG--AMEFTHKFFKEIMCRSSKVHVSDEL 424
++ + DP E+G G AM+ K R +K + D
Sbjct: 332 GLLGSGTYFKKQFSDPVEHGQRHTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKD-- 389
Query: 425 QLPPQEECVSWLTFSPIEEHFYQSQHET 452
QLP +E+ + + + + ++ YQ+ ET
Sbjct: 390 QLPKKEDRMVYCSLTDFQKAVYQTVLET 417
Score = 78 (32.5 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 79 YVFGG--ILADEMGLGKTVELLACIFA--HRKPASDD 111
Y+ GG IL D+MGLGKTV++++ + A H+K +D
Sbjct: 149 YIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTRED 185
Score = 56 (24.8 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 19/71 (26%), Positives = 30/71 (42%)
Query: 217 SPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGA 276
S A LIV P +L W E+ G + + G R D ++ + +
Sbjct: 204 SSTAKKMFLIVAPLSVLYNWKDELDTW---GYFRVTVLHGNRK----DNELIRVKQRK-C 255
Query: 277 DIVLTTYDVLK 287
+I LTTY+ L+
Sbjct: 256 EIALTTYETLR 266
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 111 (44.1 bits), Expect = 0.00017, Sum P(4) = 0.00017
Identities = 39/143 (27%), Positives = 65/143 (45%)
Query: 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFL 374
+L +I W + +DE ++++ T++ Y A R +TGTP+Q KL +L+ LL FL
Sbjct: 839 ILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFL 898
Query: 375 KSSPF----SISRWWIEVIRDPYENGDVGAMEFT------HKFFKEIMCRSSKVHVSDEL 424
+ F + +W+ E D+ E HK + + R K V E
Sbjct: 899 LPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEV--ES 956
Query: 425 QLPPQEECVSWLTFSPIEEHFYQ 447
QLP + E V S +++ Y+
Sbjct: 957 QLPEKVEYVIKCDMSALQKILYR 979
Score = 73 (30.8 bits), Expect = 0.00017, Sum P(4) = 0.00017
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 83 GILADEMGLGKTVELLACI 101
GILADEMGLGKT++ +A I
Sbjct: 745 GILADEMGLGKTIQTIALI 763
Score = 50 (22.7 bits), Expect = 0.00017, Sum P(4) = 0.00017
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 492 AAKLLNSLLKLRQACCHP 509
A L+N++++LR+ C HP
Sbjct: 1002 AKTLMNTIMQLRKICNHP 1019
Score = 46 (21.3 bits), Expect = 0.00017, Sum P(4) = 0.00017
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLT 281
G LI+ P L+ W E + P +K Y+G S + + +++LT
Sbjct: 774 GPYLIIVPLSTLSNWTYEFDKWA-PSVVKIS-YKGTPAMRRSLVPQLRSGKF---NVLLT 828
Query: 282 TYDVLKED 289
TY+ + +D
Sbjct: 829 TYEYIIKD 836
WARNING: HSPs involving 40 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.132 0.392 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1045 1005 0.00079 123 3 11 22 0.39 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 290
No. of states in DFA: 629 (67 KB)
Total size of DFA: 495 KB (2230 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 92.64u 0.12s 92.76t Elapsed: 00:00:06
Total cpu time: 92.70u 0.12s 92.82t Elapsed: 00:00:06
Start: Tue May 21 08:34:03 2013 End: Tue May 21 08:34:09 2013
WARNINGS ISSUED: 2