Query 001607
Match_columns 1045
No_of_seqs 471 out of 3013
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 04:58:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001607.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001607hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0298 DEAD box-containing he 100.0 1.7E-84 3.6E-89 778.9 26.3 876 3-1043 236-1128(1394)
2 KOG0385 Chromatin remodeling c 100.0 8.8E-82 1.9E-86 722.4 25.5 367 220-650 216-617 (971)
3 KOG0384 Chromodomain-helicase 100.0 5.6E-75 1.2E-79 694.2 21.4 414 220-703 419-889 (1373)
4 KOG0387 Transcription-coupled 100.0 2.3E-74 4.9E-79 665.4 23.5 367 222-649 256-675 (923)
5 KOG0389 SNF2 family DNA-depend 100.0 2.9E-71 6.2E-76 638.6 16.5 375 221-652 448-908 (941)
6 KOG0392 SNF2 family DNA-depend 100.0 4.5E-71 9.7E-76 656.5 18.3 374 221-647 1031-1469(1549)
7 PLN03142 Probable chromatin-re 100.0 1.5E-69 3.2E-74 673.0 28.2 366 221-649 219-616 (1033)
8 KOG0391 SNF2 family DNA-depend 100.0 2E-68 4.4E-73 625.0 15.9 232 222-511 666-904 (1958)
9 KOG4439 RNA polymerase II tran 100.0 1.3E-66 2.8E-71 592.6 25.6 400 223-650 385-876 (901)
10 KOG1002 Nucleotide excision re 100.0 2.3E-66 4.9E-71 569.4 25.2 393 222-651 232-768 (791)
11 KOG0388 SNF2 family DNA-depend 100.0 1.8E-67 3.8E-72 595.7 16.1 357 221-646 617-1168(1185)
12 KOG0386 Chromatin remodeling c 100.0 9.1E-65 2E-69 596.7 14.4 367 221-648 444-854 (1157)
13 KOG0390 DNA repair protein, SN 100.0 6.9E-56 1.5E-60 527.8 27.0 367 221-649 298-724 (776)
14 KOG1001 Helicase-like transcri 100.0 7E-52 1.5E-56 497.5 26.1 370 220-647 188-665 (674)
15 COG0553 HepA Superfamily II DN 100.0 3.7E-52 8.1E-57 531.6 22.0 375 221-647 390-837 (866)
16 KOG1015 Transcription regulato 100.0 2.7E-49 5.8E-54 458.4 22.5 385 220-642 727-1287(1567)
17 PF00176 SNF2_N: SNF2 family N 100.0 1.9E-46 4.2E-51 419.6 17.3 241 222-512 59-299 (299)
18 KOG1000 Chromatin remodeling p 100.0 2.8E-40 6.1E-45 365.2 19.7 339 222-643 242-614 (689)
19 PRK04914 ATP-dependent helicas 100.0 5.2E-39 1.1E-43 399.5 26.2 342 221-646 199-619 (956)
20 KOG1016 Predicted DNA helicase 100.0 6.2E-40 1.3E-44 374.3 14.8 393 220-643 311-860 (1387)
21 KOG0383 Predicted helicase [Ge 100.0 1.1E-39 2.5E-44 386.3 10.5 305 221-591 345-681 (696)
22 TIGR00603 rad25 DNA repair hel 99.9 3.5E-24 7.5E-29 259.3 23.5 302 222-653 299-626 (732)
23 PRK13766 Hef nuclease; Provisi 99.8 8.6E-18 1.9E-22 212.8 21.0 367 222-640 59-487 (773)
24 COG1061 SSL2 DNA or RNA helica 99.5 3.8E-12 8.3E-17 150.5 23.0 294 223-639 82-401 (442)
25 PF04851 ResIII: Type III rest 99.4 7.1E-12 1.5E-16 129.6 13.8 123 223-360 52-183 (184)
26 smart00487 DEXDc DEAD-like hel 99.3 1.8E-11 4E-16 127.0 13.1 114 222-362 55-173 (201)
27 cd00046 DEXDc DEAD-like helica 99.3 1.8E-11 3.9E-16 119.5 12.3 111 221-359 30-144 (144)
28 PHA02558 uvsW UvsW helicase; P 99.2 2.8E-10 6E-15 137.2 15.7 100 222-361 159-261 (501)
29 KOG1123 RNA polymerase II tran 99.2 6.2E-11 1.3E-15 133.4 9.3 128 222-377 346-474 (776)
30 PRK11448 hsdR type I restricti 99.0 4.9E-09 1.1E-13 135.3 14.8 115 222-362 464-597 (1123)
31 COG1111 MPH1 ERCC4-like helica 98.9 4.6E-08 1E-12 112.1 20.2 127 222-377 59-189 (542)
32 cd00268 DEADc DEAD-box helicas 98.7 1.4E-07 2.9E-12 100.0 14.9 112 222-361 70-186 (203)
33 TIGR00348 hsdR type I site-spe 98.7 9.4E-08 2E-12 118.8 13.5 110 222-362 294-405 (667)
34 TIGR00643 recG ATP-dependent D 98.7 1.9E-07 4.1E-12 115.8 14.3 112 223-364 286-401 (630)
35 PF00270 DEAD: DEAD/DEAH box h 98.6 3.7E-07 8.1E-12 93.3 11.1 117 222-366 45-168 (169)
36 PF13872 AAA_34: P-loop contai 98.5 2.1E-06 4.6E-11 94.6 15.5 145 275-448 136-302 (303)
37 PRK10917 ATP-dependent DNA hel 98.4 1.1E-06 2.4E-11 109.8 12.8 111 223-364 312-424 (681)
38 KOG0354 DEAD-box like helicase 98.4 2.3E-05 5E-10 95.3 22.9 124 221-374 106-235 (746)
39 PRK10689 transcription-repair 98.3 3.3E-06 7.2E-11 109.9 12.9 112 222-364 650-763 (1147)
40 TIGR00614 recQ_fam ATP-depende 98.3 3.8E-06 8.3E-11 100.9 12.2 129 222-376 52-189 (470)
41 TIGR00580 mfd transcription-re 98.3 4.2E-06 9.1E-11 106.7 12.8 113 222-365 501-615 (926)
42 PRK11192 ATP-dependent RNA hel 98.3 9.2E-06 2E-10 96.6 14.4 118 222-366 74-195 (434)
43 PRK02362 ski2-like helicase; P 98.2 1.2E-05 2.5E-10 101.9 15.6 115 222-369 68-189 (737)
44 COG4096 HsdR Type I site-speci 98.2 4.1E-06 9E-11 101.4 10.5 106 222-362 216-323 (875)
45 PRK01172 ski2-like helicase; P 98.2 1.5E-05 3.1E-10 100.2 15.4 114 222-368 66-186 (674)
46 PRK10590 ATP-dependent RNA hel 98.2 2.2E-05 4.7E-10 94.0 15.2 111 223-360 77-191 (456)
47 COG1204 Superfamily II helicas 98.1 1.1E-05 2.4E-10 101.0 12.3 122 222-379 77-205 (766)
48 PRK11776 ATP-dependent RNA hel 98.1 2.3E-05 4.9E-10 94.0 13.9 111 223-360 74-189 (460)
49 TIGR01389 recQ ATP-dependent D 98.1 1.4E-05 3E-10 98.8 12.3 127 222-375 54-188 (591)
50 PTZ00424 helicase 45; Provisio 98.1 2.9E-05 6.3E-10 91.2 13.8 111 222-360 97-212 (401)
51 PRK11057 ATP-dependent DNA hel 98.1 2.3E-05 5E-10 97.0 13.3 128 222-376 66-201 (607)
52 PRK00254 ski2-like helicase; P 98.1 4.6E-05 1E-09 96.3 16.1 115 222-369 69-187 (720)
53 PLN00206 DEAD-box ATP-dependen 98.1 4.9E-05 1.1E-09 92.4 15.3 111 222-360 197-311 (518)
54 PTZ00110 helicase; Provisional 98.0 4.7E-05 1E-09 93.0 13.6 110 223-359 205-318 (545)
55 COG1200 RecG RecG-like helicas 98.0 2.3E-05 5E-10 93.9 10.4 111 224-365 314-427 (677)
56 PRK11634 ATP-dependent RNA hel 98.0 5.8E-05 1.3E-09 93.4 14.0 110 223-359 76-190 (629)
57 PRK01297 ATP-dependent RNA hel 98.0 7.3E-05 1.6E-09 90.0 14.2 113 222-360 163-281 (475)
58 PRK04837 ATP-dependent RNA hel 98.0 8E-05 1.7E-09 88.4 14.3 111 222-360 84-201 (423)
59 COG4889 Predicted helicase [Ge 97.9 1.7E-05 3.6E-10 95.4 7.2 116 222-360 207-351 (1518)
60 PRK05580 primosome assembly pr 97.8 0.00015 3.2E-09 90.8 13.9 108 222-362 191-307 (679)
61 PRK09401 reverse gyrase; Revie 97.8 0.00015 3.2E-09 95.1 14.4 88 222-334 124-214 (1176)
62 PRK04537 ATP-dependent RNA hel 97.8 0.00016 3.4E-09 88.9 13.9 112 222-360 85-203 (572)
63 TIGR03158 cas3_cyano CRISPR-as 97.7 0.00035 7.6E-09 81.0 14.6 125 223-361 41-193 (357)
64 COG1205 Distinct helicase fami 97.7 0.00017 3.7E-09 91.7 12.2 114 222-358 116-241 (851)
65 KOG0298 DEAD box-containing he 97.7 1.1E-05 2.5E-10 100.8 1.5 106 539-644 1215-1338(1394)
66 PRK13767 ATP-dependent helicas 97.7 0.00027 5.8E-09 91.0 13.6 113 222-359 85-217 (876)
67 PF07652 Flavi_DEAD: Flaviviru 97.6 0.00039 8.5E-09 68.9 10.6 101 222-361 34-138 (148)
68 KOG0331 ATP-dependent RNA heli 97.6 0.0016 3.4E-08 77.3 16.6 107 223-358 167-280 (519)
69 TIGR00595 priA primosomal prot 97.6 0.00033 7.1E-09 84.7 10.9 108 222-362 26-142 (505)
70 TIGR03817 DECH_helic helicase/ 97.5 0.00085 1.8E-08 84.8 14.7 112 223-359 83-204 (742)
71 PLN03137 ATP-dependent DNA hel 97.4 0.00081 1.7E-08 85.9 11.7 130 222-374 501-641 (1195)
72 TIGR01587 cas3_core CRISPR-ass 97.4 0.00062 1.3E-08 78.8 9.5 120 222-360 30-166 (358)
73 PHA02653 RNA helicase NPH-II; 97.3 0.0067 1.5E-07 75.4 18.7 103 222-359 223-331 (675)
74 PRK15483 type III restriction- 97.2 0.0041 8.9E-08 78.8 15.4 157 222-391 90-274 (986)
75 COG1197 Mfd Transcription-repa 97.2 0.0016 3.4E-08 82.9 10.9 113 222-365 644-758 (1139)
76 TIGR03714 secA2 accessory Sec 97.1 0.0023 5E-08 79.6 10.8 118 223-371 113-232 (762)
77 KOG0952 DNA/RNA helicase MER3/ 97.0 0.0021 4.7E-08 79.8 10.0 136 223-390 166-311 (1230)
78 KOG0350 DEAD-box ATP-dependent 97.0 0.0023 5.1E-08 73.8 9.2 97 220-337 214-311 (620)
79 TIGR01054 rgy reverse gyrase. 97.0 0.0019 4.1E-08 85.0 9.1 86 222-335 122-213 (1171)
80 COG1201 Lhr Lhr-like helicases 96.7 0.008 1.7E-07 75.3 11.1 125 223-377 75-206 (814)
81 TIGR02621 cas3_GSU0051 CRISPR- 96.2 0.039 8.4E-07 69.7 13.4 117 223-360 64-216 (844)
82 PRK14701 reverse gyrase; Provi 96.1 0.015 3.2E-07 78.7 9.2 87 223-334 124-213 (1638)
83 COG0610 Type I site-specific r 95.5 0.061 1.3E-06 69.9 11.2 115 223-366 305-420 (962)
84 PRK09200 preprotein translocas 95.5 0.059 1.3E-06 67.9 10.3 102 222-359 120-226 (790)
85 PF11496 HDA2-3: Class II hist 95.3 0.056 1.2E-06 60.9 8.7 200 430-644 4-257 (297)
86 TIGR01407 dinG_rel DnaQ family 95.2 0.15 3.3E-06 66.0 13.2 41 273-335 414-454 (850)
87 PRK09751 putative ATP-dependen 95.1 0.11 2.3E-06 69.8 11.4 119 222-369 38-177 (1490)
88 PRK09694 helicase Cas3; Provis 95.0 0.14 3.1E-06 65.5 12.1 75 276-367 411-488 (878)
89 TIGR00963 secA preprotein tran 95.0 0.02 4.3E-07 71.1 4.2 117 223-365 99-221 (745)
90 PF13086 AAA_11: AAA domain; P 94.9 0.34 7.4E-06 51.7 13.1 36 321-361 192-228 (236)
91 KOG1513 Nuclear helicase MOP-3 94.7 0.072 1.6E-06 64.8 7.6 152 275-454 368-542 (1300)
92 COG1203 CRISPR-associated heli 94.0 0.27 5.8E-06 62.6 11.0 131 222-361 247-382 (733)
93 COG0513 SrmB Superfamily II DN 93.8 0.41 9E-06 58.4 11.9 108 224-359 102-215 (513)
94 PRK12899 secA preprotein trans 93.5 0.39 8.5E-06 61.0 11.1 104 223-361 137-244 (970)
95 TIGR03117 cas_csf4 CRISPR-asso 93.5 0.46 9.9E-06 58.9 11.5 43 273-337 180-222 (636)
96 PRK12898 secA preprotein trans 93.5 0.6 1.3E-05 57.9 12.4 116 222-359 145-269 (656)
97 KOG0947 Cytoplasmic exosomal R 93.2 0.21 4.6E-06 62.3 7.8 97 224-358 343-443 (1248)
98 TIGR01970 DEAH_box_HrpB ATP-de 93.0 0.39 8.5E-06 61.5 10.1 44 608-656 311-355 (819)
99 COG4098 comFA Superfamily II D 92.8 1.7 3.7E-05 49.0 13.2 40 321-361 202-245 (441)
100 KOG0330 ATP-dependent RNA heli 92.6 0.58 1.3E-05 53.3 9.5 111 223-359 131-245 (476)
101 PRK13104 secA preprotein trans 92.5 0.32 6.8E-06 61.8 8.1 101 223-359 125-229 (896)
102 PRK11664 ATP-dependent RNA hel 92.4 0.99 2.1E-05 58.0 12.7 43 609-656 315-358 (812)
103 COG1110 Reverse gyrase [DNA re 92.4 0.3 6.4E-06 61.7 7.6 87 222-333 126-215 (1187)
104 KOG1802 RNA helicase nonsense 92.3 0.34 7.4E-06 58.3 7.7 35 221-259 454-489 (935)
105 COG4581 Superfamily II RNA hel 92.1 1.1 2.4E-05 57.8 12.4 99 224-358 165-269 (1041)
106 KOG0338 ATP-dependent RNA heli 91.7 0.82 1.8E-05 53.8 9.6 122 219-370 250-378 (691)
107 COG0514 RecQ Superfamily II DN 91.6 0.26 5.6E-06 60.0 5.7 132 220-378 56-195 (590)
108 PF00628 PHD: PHD-finger; Int 91.5 0.067 1.4E-06 43.5 0.5 31 140-174 4-34 (51)
109 KOG0335 ATP-dependent RNA heli 91.3 0.8 1.7E-05 54.1 9.2 86 222-334 153-239 (482)
110 KOG0343 RNA Helicase [RNA proc 90.6 0.76 1.6E-05 54.5 8.0 119 223-369 143-265 (758)
111 PRK13103 secA preprotein trans 90.0 0.69 1.5E-05 58.7 7.6 101 222-358 124-228 (913)
112 KOG0951 RNA helicase BRR2, DEA 89.4 1.1 2.4E-05 57.7 8.7 115 222-369 365-492 (1674)
113 PRK11131 ATP-dependent RNA hel 88.7 2.6 5.7E-05 56.1 11.7 62 275-360 163-229 (1294)
114 PRK13107 preprotein translocas 88.6 1.6 3.4E-05 55.6 9.3 110 222-369 124-237 (908)
115 KOG1132 Helicase of the DEAD s 88.1 1.7 3.8E-05 54.4 8.9 23 82-104 42-64 (945)
116 PRK12904 preprotein translocas 87.5 1.6 3.4E-05 55.6 8.3 101 223-359 124-228 (830)
117 COG3587 Restriction endonuclea 87.3 1.4 3E-05 55.0 7.4 123 222-358 105-241 (985)
118 PRK14873 primosome assembly pr 86.6 2 4.3E-05 54.0 8.5 107 222-360 189-304 (665)
119 KOG1131 RNA polymerase II tran 86.0 1.1 2.3E-05 52.9 5.3 28 82-109 37-64 (755)
120 PF09848 DUF2075: Uncharacteri 85.5 2.3 5.1E-05 49.2 8.0 17 319-335 81-97 (352)
121 smart00249 PHD PHD zinc finger 85.1 0.6 1.3E-05 36.5 2.0 24 151-174 11-34 (47)
122 PF13604 AAA_30: AAA domain; P 84.8 8.6 0.00019 40.7 11.3 39 321-361 93-132 (196)
123 KOG0336 ATP-dependent RNA heli 84.4 4 8.6E-05 47.0 8.6 108 222-358 295-406 (629)
124 PF06733 DEAD_2: DEAD_2; Inte 84.3 0.66 1.4E-05 48.0 2.4 44 271-335 115-159 (174)
125 cd00079 HELICc Helicase superf 84.0 0.5 1.1E-05 45.4 1.3 81 546-626 29-131 (131)
126 KOG0339 ATP-dependent RNA heli 83.8 4.4 9.6E-05 47.8 8.9 111 219-358 293-410 (731)
127 TIGR00376 DNA helicase, putati 83.6 7.2 0.00016 49.0 11.5 41 316-361 356-396 (637)
128 PRK04296 thymidine kinase; Pro 81.1 8.2 0.00018 40.6 9.3 36 321-358 78-114 (190)
129 COG1202 Superfamily II helicas 81.0 5 0.00011 48.2 8.1 115 220-358 260-381 (830)
130 KOG1803 DNA helicase [Replicat 80.2 3.3 7.2E-05 50.1 6.4 40 317-361 354-393 (649)
131 PRK12326 preprotein translocas 79.8 3.8 8.2E-05 51.2 6.9 102 222-359 120-225 (764)
132 TIGR01967 DEAH_box_HrpA ATP-de 77.8 8.7 0.00019 51.5 9.8 84 951-1041 1118-1202(1283)
133 KOG0345 ATP-dependent RNA heli 77.7 11 0.00024 44.5 9.3 110 223-358 81-197 (567)
134 smart00488 DEXDc2 DEAD-like he 76.1 1.5 3.4E-05 49.3 2.1 44 271-335 207-250 (289)
135 smart00489 DEXDc3 DEAD-like he 76.1 1.5 3.4E-05 49.3 2.1 44 271-335 207-250 (289)
136 KOG0924 mRNA splicing factor A 75.2 1.4 3E-05 53.5 1.4 50 603-656 667-717 (1042)
137 PRK11747 dinG ATP-dependent DN 74.2 2.4 5.1E-05 53.8 3.2 48 271-337 215-262 (697)
138 PRK12906 secA preprotein trans 73.4 7.2 0.00016 49.6 7.1 87 222-333 122-212 (796)
139 PRK07003 DNA polymerase III su 71.3 16 0.00034 46.3 9.2 58 321-380 119-179 (830)
140 PF02399 Herpes_ori_bp: Origin 70.7 43 0.00094 42.6 12.8 100 222-358 79-189 (824)
141 PF13401 AAA_22: AAA domain; P 69.5 3.8 8.2E-05 39.6 2.8 35 323-359 89-125 (131)
142 KOG1844 PHD Zn-finger proteins 69.4 2.2 4.9E-05 51.9 1.5 37 135-174 85-121 (508)
143 KOG1973 Chromatin remodeling p 69.1 2.3 4.9E-05 47.6 1.3 49 135-212 218-269 (274)
144 KOG0926 DEAH-box RNA helicase 69.0 11 0.00023 47.2 6.8 22 82-103 273-294 (1172)
145 COG0556 UvrB Helicase subunit 68.9 8 0.00017 46.3 5.6 31 222-252 58-89 (663)
146 KOG0333 U5 snRNP-like RNA heli 68.5 12 0.00026 44.7 6.9 86 223-335 324-410 (673)
147 PF07517 SecA_DEAD: SecA DEAD- 67.8 30 0.00065 38.6 9.7 87 222-333 119-209 (266)
148 PRK12902 secA preprotein trans 66.8 19 0.0004 46.3 8.6 87 222-333 127-217 (939)
149 PRK14960 DNA polymerase III su 63.3 35 0.00076 42.7 9.9 20 84-103 41-60 (702)
150 PF02562 PhoH: PhoH-like prote 63.3 6.6 0.00014 42.0 3.3 43 320-364 118-160 (205)
151 KOG0340 ATP-dependent RNA heli 61.2 35 0.00077 39.1 8.5 112 223-358 77-193 (442)
152 TIGR02881 spore_V_K stage V sp 60.6 25 0.00054 38.9 7.5 20 82-101 44-63 (261)
153 TIGR00604 rad3 DNA repair heli 58.2 5.5 0.00012 50.7 2.0 64 238-336 172-235 (705)
154 PRK10536 hypothetical protein; 58.1 9.4 0.0002 42.2 3.5 41 322-364 177-217 (262)
155 KOG0342 ATP-dependent RNA heli 57.6 43 0.00094 39.9 8.8 112 221-358 154-270 (543)
156 COG1198 PriA Primosomal protei 57.3 40 0.00086 42.8 9.1 107 222-361 246-361 (730)
157 KOG0348 ATP-dependent RNA heli 56.9 36 0.00079 40.9 8.0 107 224-359 214-341 (708)
158 PRK07246 bifunctional ATP-depe 56.6 7.9 0.00017 50.1 3.0 40 272-334 410-449 (820)
159 PRK08074 bifunctional ATP-depe 56.6 7.5 0.00016 51.0 2.9 44 271-336 427-470 (928)
160 KOG0347 RNA helicase [RNA proc 56.0 34 0.00073 41.3 7.6 111 223-358 265-385 (731)
161 PRK14958 DNA polymerase III su 56.0 58 0.0013 39.9 10.1 20 84-103 42-61 (509)
162 KOG0948 Nuclear exosomal RNA h 55.0 21 0.00045 44.5 5.8 75 224-336 175-250 (1041)
163 PF07227 DUF1423: Protein of u 55.0 11 0.00023 44.3 3.4 77 138-244 131-207 (446)
164 CHL00122 secA preprotein trans 53.9 31 0.00068 44.2 7.4 87 222-333 118-208 (870)
165 KOG4284 DEAD box protein [Tran 53.3 57 0.0012 40.2 8.9 121 218-367 90-216 (980)
166 COG5034 TNG2 Chromatin remodel 51.7 6.8 0.00015 42.4 1.1 48 134-210 219-269 (271)
167 PRK14964 DNA polymerase III su 50.7 1.2E+02 0.0027 36.8 11.6 21 82-102 37-57 (491)
168 KOG0351 ATP-dependent DNA heli 49.9 26 0.00057 45.6 6.1 136 219-380 302-451 (941)
169 KOG1805 DNA replication helica 46.4 81 0.0017 40.8 9.2 40 317-361 792-831 (1100)
170 PF05876 Terminase_GpA: Phage 45.9 63 0.0014 40.0 8.3 55 315-369 128-189 (557)
171 PF12340 DUF3638: Protein of u 45.3 1.1E+02 0.0024 33.3 9.1 65 223-288 72-143 (229)
172 PRK12900 secA preprotein trans 45.2 52 0.0011 42.9 7.5 109 223-368 181-293 (1025)
173 TIGR00269 conserved hypothetic 42.6 43 0.00093 31.7 4.9 62 786-849 36-101 (104)
174 PRK14965 DNA polymerase III su 42.5 74 0.0016 39.6 8.2 20 84-103 42-61 (576)
175 PF13173 AAA_14: AAA domain 42.5 27 0.00059 33.9 3.7 39 322-361 62-100 (128)
176 PRK07940 DNA polymerase III su 41.8 63 0.0014 38.2 7.2 23 81-103 37-59 (394)
177 PRK12901 secA preprotein trans 41.6 63 0.0014 42.3 7.4 110 224-369 213-326 (1112)
178 TIGR00596 rad1 DNA repair prot 41.2 1.6E+02 0.0035 38.2 11.0 65 274-361 6-74 (814)
179 COG1198 PriA Primosomal protei 41.1 48 0.001 42.1 6.3 64 222-288 482-547 (730)
180 PRK14969 DNA polymerase III su 38.4 76 0.0016 39.1 7.4 20 84-103 42-61 (527)
181 KOG0326 ATP-dependent RNA heli 38.2 1.5E+02 0.0032 33.8 8.6 109 220-358 152-267 (459)
182 KOG0337 ATP-dependent RNA heli 38.1 51 0.0011 38.7 5.3 105 222-358 91-204 (529)
183 PRK07764 DNA polymerase III su 38.0 73 0.0016 41.3 7.4 20 84-103 41-60 (824)
184 TIGR00631 uvrb excinuclease AB 37.7 58 0.0013 41.1 6.4 31 222-254 55-86 (655)
185 KOG1133 Helicase of the DEAD s 37.6 17 0.00037 44.9 1.5 56 248-336 308-363 (821)
186 KOG0949 Predicted helicase, DE 37.4 61 0.0013 41.8 6.2 138 200-371 538-681 (1330)
187 PHA00673 acetyltransferase dom 37.4 55 0.0012 33.4 5.0 44 322-365 88-134 (154)
188 PRK14963 DNA polymerase III su 37.2 1.9E+02 0.0041 35.4 10.5 20 84-103 40-59 (504)
189 TIGR02880 cbbX_cfxQ probable R 36.7 66 0.0014 36.2 6.0 21 82-102 60-80 (284)
190 KOG0353 ATP-dependent DNA heli 36.2 49 0.0011 37.9 4.7 55 317-371 211-272 (695)
191 PF00271 Helicase_C: Helicase 36.1 30 0.00065 30.1 2.6 17 602-618 61-78 (78)
192 CHL00181 cbbX CbbX; Provisiona 35.9 88 0.0019 35.3 6.9 19 84-102 63-81 (287)
193 PF08824 Serine_rich: Serine r 34.7 77 0.0017 32.5 5.5 118 714-834 5-134 (159)
194 PRK12903 secA preprotein trans 34.3 1.1E+02 0.0023 39.6 7.8 67 501-568 377-449 (925)
195 KOG0334 RNA helicase [RNA proc 33.8 87 0.0019 40.7 6.9 57 224-287 441-500 (997)
196 COG1702 PhoH Phosphate starvat 32.9 22 0.00048 40.7 1.4 41 322-364 244-284 (348)
197 KOG0328 Predicted ATP-dependen 31.5 2E+02 0.0043 32.3 8.2 110 222-359 96-210 (400)
198 PRK05896 DNA polymerase III su 31.0 2.8E+02 0.0061 34.7 10.5 21 83-103 41-61 (605)
199 TIGR00595 priA primosomal prot 30.8 1.1E+02 0.0023 37.6 6.9 53 230-284 268-321 (505)
200 PLN03025 replication factor C 30.4 74 0.0016 36.3 5.3 59 321-379 99-158 (319)
201 PF07496 zf-CW: CW-type Zinc F 28.8 19 0.00042 29.3 0.1 15 153-167 2-16 (50)
202 PF13245 AAA_19: Part of AAA d 28.7 82 0.0018 28.0 4.1 19 86-104 16-34 (76)
203 PRK06647 DNA polymerase III su 28.6 1.4E+02 0.0031 37.0 7.6 20 84-103 42-61 (563)
204 COG1875 NYN ribonuclease and A 28.6 47 0.001 38.5 3.0 40 321-362 351-390 (436)
205 KOG0952 DNA/RNA helicase MER3/ 28.5 1.1E+02 0.0025 39.9 6.6 89 221-337 973-1062(1230)
206 COG1643 HrpA HrpA-like helicas 27.3 2.9E+02 0.0063 36.0 10.1 27 609-635 363-390 (845)
207 PRK14971 DNA polymerase III su 27.0 3.1E+02 0.0067 34.5 10.1 58 321-380 121-181 (614)
208 KOG0951 RNA helicase BRR2, DEA 26.4 2.6E+02 0.0057 37.5 9.2 102 222-362 1187-1301(1674)
209 PRK12723 flagellar biosynthesi 25.2 4.9E+02 0.011 30.8 10.8 57 321-377 254-315 (388)
210 KOG4323 Polycomb-like PHD Zn-f 24.2 26 0.00057 41.6 0.1 54 136-211 171-224 (464)
211 COG4646 DNA methylase [Transcr 23.9 36 0.00078 40.1 1.1 32 348-379 472-503 (637)
212 KOG0346 RNA helicase [RNA proc 23.8 87 0.0019 37.0 4.1 110 223-358 95-210 (569)
213 PRK05707 DNA polymerase III su 23.6 3.8E+02 0.0082 30.8 9.4 21 84-104 26-46 (328)
214 COG1199 DinG Rad3-related DNA 23.6 59 0.0013 41.0 3.1 44 274-337 193-236 (654)
215 TIGR01447 recD exodeoxyribonuc 21.9 82 0.0018 39.3 3.8 40 320-361 258-297 (586)
216 PF12387 Peptidase_C74: Pestiv 21.2 82 0.0018 32.3 2.8 64 784-847 104-182 (200)
217 PRK05298 excinuclease ABC subu 20.7 4.3E+02 0.0093 33.5 9.8 31 222-254 58-89 (652)
218 KOG3259 Peptidyl-prolyl cis-tr 20.2 83 0.0018 31.6 2.6 59 45-106 8-66 (163)
219 COG4224 Uncharacterized protei 20.1 67 0.0014 28.4 1.7 20 695-714 27-46 (77)
220 PF08807 DUF1798: Bacterial do 20.0 4E+02 0.0087 25.7 7.2 100 691-800 3-110 (111)
No 1
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=1.7e-84 Score=778.90 Aligned_cols=876 Identities=29% Similarity=0.342 Sum_probs=682.9
Q ss_pred CCCCCCccCCChHHHHHHHHHHHHhhhCCCCCC------chhhhccccCCCcccccccCCCcceeeeccCCcccCCCCCC
Q 001607 3 EEDLPDLLPLLRPYQRRAAYWMVQREKGDSASS------SERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYT 76 (1045)
Q Consensus 3 ~~~~p~L~~~LrpyQ~~av~WMl~rE~~~~~~~------~~~~~~~~~~plw~~~~~~d~~~~~y~n~~tG~~~~~~~~~ 76 (1045)
.+.+..+.+++|+||.+++.||.+|+..-...+ ......+...++-.++.+.+-+. .-+.
T Consensus 236 ~D~~~~~~~~~r~~~~r~~~~~~~~~~e~~~~s~~~It~~~~~di~~~~~~~l~~~~~~~~~--------------~l~~ 301 (1394)
T KOG0298|consen 236 LDLIKRFQSQLRKYQQRTVSWMPSREQEYTQVSANFITLHLIDDITRVFKLKLCFQFYSFEE--------------ELPK 301 (1394)
T ss_pred chHHHHhhhhccHHHHHHHHhccccchhhhhccccccccccccchHHHhhhccceecccccc--------------cchh
Confidence 345667789999999999999999998543211 01111111111111111111110 1122
Q ss_pred CCCccCceeecCCCCcHHHHHHHHHHhccCCCCCCccccccccccchhhhhHHHHhhhhhhhhhcccccccccccccccc
Q 001607 77 SSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQ 156 (1045)
Q Consensus 77 ~~~~rGGILADEMGLGKTvq~LalI~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~c~c~~~~~~~~~~~~~v~ 156 (1045)
.+.+.||.+|||||||||++-+|++..++.|... ..........|.|+...+...+.+.|++
T Consensus 302 e~l~~~~t~~de~gl~k~~E~~a~~~~n~~p~~~------------------~~~s~~~~~~~~~~~~~e~~~~r~nq~~ 363 (1394)
T KOG0298|consen 302 ESLSPGGTLADEMGLGKTVEFLAMLTSNRRPPDS------------------YRNSYLHQRLEEYSDEVELKRSRINQKD 363 (1394)
T ss_pred ccCCCcchHHHHhhhHHHHHHHHHHhccCCCccc------------------ccchHHHHHHHHHhhhhHhHHhHhhhhh
Confidence 3345699999999999999999999999877422 2233445677889999998889999999
Q ss_pred cccccccccccccccCCCCCCccchhhhhhhcccccc--ccccccCCcccccchhhhhhccCCCCCCCcEEEEeCchhHH
Q 001607 157 CDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDM--TNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILA 234 (1045)
Q Consensus 157 c~~c~~w~h~~cv~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~tLIV~P~SLl~ 234 (1045)
|..|..|.++.-.+.-.+.. ..+|... .........+.|..|.........+..+|+||||||.+++.
T Consensus 364 ~~~~~~~~~~g~~~~~ade~----------~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~ 433 (1394)
T KOG0298|consen 364 EVLCSGDKKHGKRVQCADEM----------GWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILM 433 (1394)
T ss_pred HHhhcCCccCCcceeehhhh----------hccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHH
Confidence 99998888764111000000 0011111 12233355566667777777778889999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccchhhhhhcccCCCcc
Q 001607 235 QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIP 314 (1045)
Q Consensus 235 qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~~~~r~~k~~~~~~ 314 (1045)
||-.||.+|++ +.++|+.|.|.++.. ...+..+.+||||+|||++|+.++.+. ...++.|.+|++++|+.++
T Consensus 434 QW~~EI~kH~~-~~lKv~~Y~Girk~~-----~~~~~el~~yDIVlTtYdiLr~El~ht--e~~~~~R~lR~qsr~~~~~ 505 (1394)
T KOG0298|consen 434 QWFEEIHKHIS-SLLKVLLYFGIRKTF-----WLSPFELLQYDIVLTTYDILRNELYHT--EDFGSDRQLRHQSRYMRPN 505 (1394)
T ss_pred HHHHHHHHhcc-ccceEEEEechhhhc-----ccCchhhhccCEEEeehHHHHhHhhcc--cccCChhhhhcccCCCCCC
Confidence 99999999995 347999999997654 235588899999999999999999885 4568889999999999999
Q ss_pred ccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCChhhhhhcccccCCCCCCChHHHHHHHcCCCc
Q 001607 315 TLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYE 394 (1045)
Q Consensus 315 s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~LL~FL~p~~~~~~~~f~~~~~~p~~ 394 (1045)
+||..+.||||||||||++.+.+|.+++|+..|++.+||++||||||+ ++||++||.||+..||+...+|.+.+..++.
T Consensus 506 SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~ 584 (1394)
T KOG0298|consen 506 SPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQ 584 (1394)
T ss_pred CchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999988876
Q ss_pred CCchhhHHHHHHHHHHhhhhcccccccccCCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 001607 395 NGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVP 474 (1045)
Q Consensus 395 ~~~~~~~~~L~~~l~~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1045)
.. .....+..++...++|+.|.+|..++.+||+.+.++++.+++.|-++|+..+..|.++++..+..++.+.+..
T Consensus 585 ~r--a~~~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~--- 659 (1394)
T KOG0298|consen 585 LR--AKCEPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDN--- 659 (1394)
T ss_pred HH--hhhhhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhcccc---
Confidence 54 4566788999999999999999999999999999999999999999999999999999999888887665411
Q ss_pred CCCCCCCCcCcccchhhHHHHHHHHHHHHHHccCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHhhhhhcchHHHhhhh
Q 001607 475 GHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNG 554 (1045)
Q Consensus 475 g~~~~~~~~~~~~~~~~~~~il~~L~rLRqiC~HP~L~~~~~~~~~~~~~t~~elL~~Ll~~~~~e~~~~~rkvlifsq~ 554 (1045)
+.+.+.+++...+.++.+|++|||+||||+++.++..+.... +++|+|..|+++...++....|.....+++
T Consensus 660 ------~sd~~~l~~~~~a~i~~~l~rLRq~Cchplv~~~~ls~~k~~--s~~DiL~~lle~~ed~~~~~~R~~~~~~~~ 731 (1394)
T KOG0298|consen 660 ------SSDLASLSPQLLAIILKWLLRLRQACCHPLVGNSNLSSTKYL--SIQDILARLLENTEDECKTELRTLASSKNG 731 (1394)
T ss_pred ------ccccccCChhhHHHHHHHHHHHHHhhcccccccCCcchhcCC--CHHHHHHHHHHhcchhhhHHHHHHHHHhhh
Confidence 122234556678899999999999999999999988776555 999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHH----HHHHHHHHHHHHHHHhhcc-CCCCCcCceeEeeCCcCCcchhhhhhhhhhcCCCCceEEEecc
Q 001607 555 LAGIALIEKNLSQ----AVSLYKEAMAVVEEHSEDF-RLDPLLNIHLHHNLTEILPMVANCATELSQNEQHFPGCSEKAF 629 (1045)
Q Consensus 555 ~a~L~ii~~~~~~----a~~~y~~~l~~~~~~~~~f-~~d~~~~~~~~~nl~~~np~~~~QA~R~hriGq~~~v~~~r~~ 629 (1045)
.|.+..+.++|.. ....|+..+....+..++. -.|.....|-.+++. +|.
T Consensus 732 ~a~i~~~~n~f~~~~l~i~k~y~~~~nl~~~~~~~~~~~d~d~h~~ei~~~~--~~~----------------------- 786 (1394)
T KOG0298|consen 732 LAAIYFEKNDFPGGILQIIKYYRLKLNLANEPNEQNISVDSDLHIHEIYNLL--QAS----------------------- 786 (1394)
T ss_pred hHHHHHHHhcCchhHHHHHHHhccccccCCCchhcccccchhhHHHHHhhhh--ccc-----------------------
Confidence 9999999998884 4455666555443332221 123333333333333 110
Q ss_pred ccCCccccchhHhhhhccccccCCCCCCCCCCCCCCCccccCCCCCCCCCCcCCCCCCCChhhHHHHHHHHHHHhhhhhh
Q 001607 630 KIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDRKSDCCVSSSSFDDASLITVCENLKQKYLSGFS 709 (1045)
Q Consensus 630 ~~~t~ee~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~ 709 (1045)
.+-+-+...+..++|+.-.+. +...+.. |....++ +.--|..++++|++.+.
T Consensus 787 -~~~~sd~~~~~~~~~~~~~~~--------------------s~~~~~~--~~d~~~~-----~~~~~q~~~~kl~s~~~ 838 (1394)
T KOG0298|consen 787 -SLAPSDRKLTELEHKKYQAQM--------------------SRLEWKY--LEDETRV-----LYSLLQDLNEKLESVSI 838 (1394)
T ss_pred -cccchhhhHHHHHHHhhhhhh--------------------ccccchh--hchhhHH-----HHHHHHHHHHHHHHHHh
Confidence 000011112222222222211 1111111 1111222 66778899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcccCChhHHHHHHHhhcCCCchHHHHHHHHHHhhccccccccccccccccCcchhH
Q 001607 710 VKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKSRALRTASRYRSISGLT 789 (1045)
Q Consensus 710 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ww~~~l~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~gL~ 789 (1045)
.+...++.+|...+.++.+..+..+.....||++.....+.+.++..+|- .|+.+++.+.+++
T Consensus 839 ~~~t~~~~e~~~~~~~~~~v~s~m~~k~~~~v~~~~~lqe~~~~~~~eLr-----------------ai~~~~~~i~i~~ 901 (1394)
T KOG0298|consen 839 LKKTFELEEFDLLATNMVNVKSSMGDKIWNKVRDDRLLQEINVEFLEELR-----------------AIAFRARFIHIMK 901 (1394)
T ss_pred hhhhhhHHHHHHHhhhhhhhhccccchhHHHHHhhhHHHHHHHHHHHHHH-----------------HHHhhhhccccch
Confidence 99999999999999999999999999999999999999999888877776 2666899999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhhcCCChHhhhhccccccccCCCCCCcccccccchhHHHHHHhhccccccCCCc
Q 001607 790 YHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQDYEARLFRLKKSQGDI 869 (1045)
Q Consensus 790 ~~l~~~l~~L~~~R~~~~~~l~~l~~~~~~p~~~~ve~~~~C~~c~~~~~~~~C~~C~~~~~~~~ye~~LF~~~~~~~~~ 869 (1045)
..|++...+|..+++.+..++.++++.++.+...+..+...|-.|-...-++.|.+|.+|..+..|+++.|+.+...++-
T Consensus 902 l~L~~~~~~l~~s~~e~~~~~~~i~~~Ie~~~~~~~n~~~i~d~~~k~~~~h~~~~~~~d~~~~i~~~r~~~~~~~~~~~ 981 (1394)
T KOG0298|consen 902 LKLQNLKSDLIASFEEVKGVMQEICEAIETGGALVLNRMEIIDFIEKVTVCHLTDIEDYDKDKPIKPKRHRRCRLCLRRK 981 (1394)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHhccCCCcchHhhcccccccccchhhhhhhhhhhh
Confidence 99999999999999999999999999999999888888888888887777888999999999999999998866543332
Q ss_pred ---cchHHHHHHHhhhccccccccccCCCCCCCCCCCCchhhhhccccccceeeccCCchHHHHHHHHHHH-HHhhhchh
Q 001607 870 ---ASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDVRETVVVSKSPSELEVILGVIKNY-CKTQLGRE 945 (1045)
Q Consensus 870 ---~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Se~E~~Lk~i~~~-~k~~~~~~ 945 (1045)
+-++|-+.+|.+..+++-+.-++++ -.-..-|.|..+ .+.++.++
T Consensus 982 ~~i~~~ce~~~~q~k~~~~~s~~~~l~~-------------------------------~~~~~ekSi~~~~~~~~l~~e 1030 (1394)
T KOG0298|consen 982 SLILFECELFALQPKEDATVSESLELSS-------------------------------MEKSFEKSIIAFLRKKQLFSE 1030 (1394)
T ss_pred HHHHHHHHHHhcCccccchhhhhhccch-------------------------------hhhcchhhHHHHHHHHHHHHH
Confidence 5566777777665544443322221 111112334444 45589999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccccCCCCCcccccCccccchhhhhchhhHHHhH
Q 001607 946 AISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDEIRMATTRLHLKEDDNDTSVDALSPDELASASVTNSSEKFISM 1025 (1045)
Q Consensus 946 ~~~~~~~~l~~le~~rkE~~~~r~l~~a~~~~l~A~DEL~ma~~Rlrlr~~~e~~~~~~i~~~ev~~~~~~~~~~k~~a~ 1025 (1045)
+..+|+.|+++|+.|+.++...++||..+.|.+.|+||++|+++|+.|++..|..++|.|+.++++.+.+-.+++++++.
T Consensus 1031 ~~~~~t~~~~~l~~lqnt~~~~~~~~~~~qq~~~~~~~~~~~~m~l~lkd~~~~~~~y~i~~~qld~~~~~nt~s~~~~q 1110 (1394)
T KOG0298|consen 1031 WKEEATPLLELLSCLQNTYKFRIEYWIEVQQMVDALDELEMSKMRLYLKDDEEEQSIYRILACQLDEQSQLNTYSLQTSQ 1110 (1394)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhheeeecCcHHHHHHHHHHHhhHHHHHHHhHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccccccc
Q 001607 1026 TLLSQVKGKLRYLKVSTE 1043 (1045)
Q Consensus 1026 ~~l~~~~gql~YL~~~~~ 1043 (1045)
..+..+.|-+|||+||.|
T Consensus 1111 ~~~ls~~G~~r~lk~l~e 1128 (1394)
T KOG0298|consen 1111 LSFLSIPGLLRYLKGLKE 1128 (1394)
T ss_pred hhhhccchHHHHHHHHHH
Confidence 999999999999999975
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=8.8e-82 Score=722.45 Aligned_cols=367 Identities=23% Similarity=0.338 Sum_probs=312.1
Q ss_pred CCCcEEEEeCchhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCcc
Q 001607 220 ATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 299 (1045)
Q Consensus 220 ~~~~tLIV~P~SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~ 299 (1045)
..||+||+||.|++.||.+||.+|+ |++++++|+|.+..+.... .....-..+||+||||++..++.
T Consensus 216 ~~GPfLVi~P~StL~NW~~Ef~rf~--P~l~~~~~~Gdk~eR~~~~--r~~~~~~~fdV~iTsYEi~i~dk--------- 282 (971)
T KOG0385|consen 216 IPGPFLVIAPKSTLDNWMNEFKRFT--PSLNVVVYHGDKEERAALR--RDIMLPGRFDVCITSYEIAIKDK--------- 282 (971)
T ss_pred CCCCeEEEeeHhhHHHHHHHHHHhC--CCcceEEEeCCHHHHHHHH--HHhhccCCCceEeehHHHHHhhH---------
Confidence 3589999999999999999999999 8999999999976543211 12222348999999999999875
Q ss_pred chhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCChhhhhhcccccCCCCC
Q 001607 300 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379 (1045)
Q Consensus 300 ~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~LL~FL~p~~~ 379 (1045)
+.|.+++|.++|+||||+|||.+|..++.++.+.+.+|++|||||+||++.|||+||+||-|+.|
T Consensus 283 ---------------~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF 347 (971)
T KOG0385|consen 283 ---------------SFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIF 347 (971)
T ss_pred ---------------HHHhcCCceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhc
Confidence 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHcCCCcCCchhhHHHHHHHHHHhhhhcccccccccCCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 001607 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYARE 459 (1045)
Q Consensus 380 ~~~~~f~~~~~~p~~~~~~~~~~~L~~~l~~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Q~~~Y~~i~~~~~~~~~~ 459 (1045)
++...|..+|......++.+.+.+|+.+++||++||.|.+|... |||+.+.+++|.||+.|+++|.+++.+-.....
T Consensus 348 ~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~s--LppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n- 424 (971)
T KOG0385|consen 348 NSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKS--LPPKKELIIYVGMSSMQKKWYKAILMKDLDALN- 424 (971)
T ss_pred cCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhc--CCCcceeeEeccchHHHHHHHHHHHHhcchhhc-
Confidence 99999999999877778888999999999999999999999654 999999999999999999999998654221110
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCcCcccchhhHHHHHHHHHHHHHHccCCCCCCCCcccccCCCCCHHH----------H
Q 001607 460 VIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDE----------I 529 (1045)
Q Consensus 460 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~il~~L~rLRqiC~HP~L~~~~~~~~~~~~~t~~e----------l 529 (1045)
+ .+ ..+...+++++|+||++||||+|+.+.. + ..+.+.++ |
T Consensus 425 ---------------~---~~--------~~~k~kL~NI~mQLRKccnHPYLF~g~e-P--g~pyttdehLv~nSGKm~v 475 (971)
T KOG0385|consen 425 ---------------G---EG--------KGEKTKLQNIMMQLRKCCNHPYLFDGAE-P--GPPYTTDEHLVTNSGKMLV 475 (971)
T ss_pred ---------------c---cc--------cchhhHHHHHHHHHHHhcCCccccCCCC-C--CCCCCcchHHHhcCcceeh
Confidence 0 00 1136789999999999999999998732 2 23444333 7
Q ss_pred HHHHHHHHHHhhhhhcchHHHhhhhHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHhhccCCCCCc---Cc------e
Q 001607 530 LMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRLDPLL---NI------H 595 (1045)
Q Consensus 530 L~~Ll~~~~~e~~~~~rkvlifsq~~a~L~ii~~~~~~a~~~y~~~l~-----~~~~~~~~f~~d~~~---~~------~ 595 (1045)
|++||.+++.+| |+||+|||++.|||||+++......-|-+..+ .+.+.++.|+.++.- ++ +
T Consensus 476 LDkLL~~Lk~~G----hRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGG 551 (971)
T KOG0385|consen 476 LDKLLPKLKEQG----HRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGG 551 (971)
T ss_pred HHHHHHHHHhCC----CeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccc
Confidence 888998888887 99999999999999999988887777755543 666677788887732 22 6
Q ss_pred eEeeCC----------cCCcchhhhhh-hhhhcCCCCceEEEeccccCCccccchhHhhhhccccc
Q 001607 596 LHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSRE 650 (1045)
Q Consensus 596 ~~~nl~----------~~np~~~~QA~-R~hriGq~~~v~~~r~~~~~t~ee~~~~~~k~k~~~~~ 650 (1045)
+++||+ ||||++|.||+ |||||||+|+|.||||+|++||||.|++.+-.|.-.+.
T Consensus 552 LGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~ 617 (971)
T KOG0385|consen 552 LGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDK 617 (971)
T ss_pred cccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhh
Confidence 678887 89999999999 99999999999999999999999999999988887764
No 3
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=5.6e-75 Score=694.22 Aligned_cols=414 Identities=20% Similarity=0.295 Sum_probs=329.6
Q ss_pred CCCcEEEEeCchhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccc-c---chhhhcCccEEEEehHHHHhhcccCCC
Q 001607 220 ATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSI-M---DISELVGADIVLTTYDVLKEDLSHDSD 295 (1045)
Q Consensus 220 ~~~~tLIV~P~SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~-~---~~~~l~~~dVVItTY~~l~~d~~~~~~ 295 (1045)
..||+|||||.|++.+|++||..|+ .+++++|+|....+...... . .....-+++++||||+++.+|..
T Consensus 419 ~~gpflvvvplst~~~W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~---- 491 (1373)
T KOG0384|consen 419 IHGPFLVVVPLSTITAWEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA---- 491 (1373)
T ss_pred ccCCeEEEeehhhhHHHHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh----
Confidence 4589999999999999999999999 79999999986543211100 0 00122368999999999998863
Q ss_pred CCccchhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCChhhhhhcccccC
Q 001607 296 RHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLK 375 (1045)
Q Consensus 296 ~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~LL~FL~ 375 (1045)
.|..++|..+++||||++||..|.++..+..++..||+++||||+||++.|||+|++||.
T Consensus 492 --------------------~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~ 551 (1373)
T KOG0384|consen 492 --------------------ELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLM 551 (1373)
T ss_pred --------------------hhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccC
Confidence 489999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHcCCCcCCchhhHHHHHHHHHHhhhhcccccccccCCCCCceEEEEEecCCHHHHHHHHHHHHHHHH
Q 001607 376 SSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVG 455 (1045)
Q Consensus 376 p~~~~~~~~f~~~~~~p~~~~~~~~~~~L~~~l~~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Q~~~Y~~i~~~~~~ 455 (1045)
|+.|.+...|...+ .......+..|+.+|+|+||||.|+||. ..|||+.|.++.|+||+.|+++|+.|+++...
T Consensus 552 P~kf~~~~~f~~~~----~~~~e~~~~~L~~~L~P~~lRr~kkdve--kslp~k~E~IlrVels~lQk~yYk~ILtkN~~ 625 (1373)
T KOG0384|consen 552 PGKFDSWDEFLEEF----DEETEEQVRKLQQILKPFLLRRLKKDVE--KSLPPKEETILRVELSDLQKQYYKAILTKNFS 625 (1373)
T ss_pred CCCCCcHHHHHHhh----cchhHHHHHHHHHHhhHHHHHHHHhhhc--cCCCCCcceEEEeehhHHHHHHHHHHHHhhHH
Confidence 99999999998877 2455677889999999999999999994 55999999999999999999999999988665
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCcCcccchhhHHHHHHHHHHHHHHccCCCCCCCCcccccCCC--CCHHH-----
Q 001607 456 YAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSP--LSMDE----- 528 (1045)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~il~~L~rLRqiC~HP~L~~~~~~~~~~~~--~t~~e----- 528 (1045)
.+. + | ..| +...+|+.+|.||+|||||+|+.+......... ...++
T Consensus 626 ~Lt------------K---G---~~g---------~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~l 678 (1373)
T KOG0384|consen 626 ALT------------K---G---AKG---------STPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQAL 678 (1373)
T ss_pred HHh------------c---c---CCC---------CCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHH
Confidence 432 1 1 111 114789999999999999999876532211100 11222
Q ss_pred --------HHHHHHHHHHHhhhhhcchHHHhhhhHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHhhccCCCCC---c
Q 001607 529 --------ILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRLDPL---L 592 (1045)
Q Consensus 529 --------lL~~Ll~~~~~e~~~~~rkvlifsq~~a~L~ii~~~~~~a~~~y~~~l~-----~~~~~~~~f~~d~~---~ 592 (1045)
+|++||.+++..| |+||||||++.||+||++++......|++..+ .++..++.|+.... .
T Consensus 679 I~sSGKlVLLDKLL~rLk~~G----HrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFv 754 (1373)
T KOG0384|consen 679 IQSSGKLVLLDKLLPRLKEGG----HRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFV 754 (1373)
T ss_pred HHhcCcEEeHHHHHHHHhcCC----ceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceE
Confidence 4566666666655 99999999999999999999999999987764 66777777865443 3
Q ss_pred Cc------eeEeeCC----------cCCcchhhhhh-hhhhcCCCCceEEEeccccCCccccchhHhhhhcccccc----
Q 001607 593 NI------HLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREE---- 651 (1045)
Q Consensus 593 ~~------~~~~nl~----------~~np~~~~QA~-R~hriGq~~~v~~~r~~~~~t~ee~~~~~~k~k~~~~~~---- 651 (1045)
+| ++|+||+ ||||+||.||+ |||||||++.|.||||||++|+||-+.+.+|+|+|.+..
T Consensus 755 FLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~ 834 (1373)
T KOG0384|consen 755 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQR 834 (1373)
T ss_pred EEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHh
Confidence 33 7789998 99999999999 999999999999999999999999999999999998721
Q ss_pred -C-----CCCC--CCCCCCCCCCccccCCCCCC-CCCCcCCCCCCCChhhHHHHHHHHHHH
Q 001607 652 -N-----SDFT--DAEDPSGHLSDLSENGFNGD-RKSDCCVSSSSFDDASLITVCENLKQK 703 (1045)
Q Consensus 652 -~-----~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 703 (1045)
+ ++.+ .+++|.+...++.++.+... ++ ...+...++++-.+..+.+
T Consensus 835 m~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~ene------~s~~~e~DIDeIL~rae~~ 889 (1373)
T KOG0384|consen 835 MDTKGKTSKSNPFSKEELSAILKFGAYELFKEEENE------ESKFCEMDIDEILERAETR 889 (1373)
T ss_pred hccccccCCCCCCCHHHHHHHHHhchHHhhhccccc------cccccccCHHHHHhhcccc
Confidence 1 1111 56667777788888888763 22 2244445555555544443
No 4
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.3e-74 Score=665.44 Aligned_cols=367 Identities=20% Similarity=0.285 Sum_probs=298.3
Q ss_pred CcEEEEeCchhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccc--------cccchhhhcCccEEEEehHHHHhhcccC
Q 001607 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDT--------SIMDISELVGADIVLTTYDVLKEDLSHD 293 (1045)
Q Consensus 222 ~~tLIV~P~SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~--------~~~~~~~l~~~dVVItTY~~l~~d~~~~ 293 (1045)
+|+|||||++|+.||++|+.+|+ |.++|.+|||......... ............|+||||+.++..-+
T Consensus 256 ~paLIVCP~Tii~qW~~E~~~w~--p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d-- 331 (923)
T KOG0387|consen 256 KPALIVCPATIIHQWMKEFQTWW--PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGD-- 331 (923)
T ss_pred CceEEEccHHHHHHHHHHHHHhC--cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCc--
Confidence 89999999999999999999999 7899999999865311100 01111233456799999999987642
Q ss_pred CCCCccchhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCChhhhhhcccc
Q 001607 294 SDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRF 373 (1045)
Q Consensus 294 ~~~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~LL~F 373 (1045)
.+..+.|++||+||||+|+|++|+.+.+++.+++.+|++||||||||++.|||+|++|
T Consensus 332 ----------------------~l~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDF 389 (923)
T KOG0387|consen 332 ----------------------DLLGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDF 389 (923)
T ss_pred ----------------------ccccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhh
Confidence 4788999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHcCCCcCCch------------hhHHHHHHHHHHhhhhcccccccccCCCCCceEEEEEecCCHH
Q 001607 374 LKSSPFSISRWWIEVIRDPYENGDV------------GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPI 441 (1045)
Q Consensus 374 L~p~~~~~~~~f~~~~~~p~~~~~~------------~~~~~L~~~l~~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~ 441 (1045)
+.|+.+|+...|.+.|..|+..|.. ...-.|+.+++||+|||+|+||.. +.||.|.+.|++|.||+.
T Consensus 390 v~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~-~~Lp~K~E~VlfC~LT~~ 468 (923)
T KOG0387|consen 390 VFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKG-LKLPKKEEIVLFCRLTKL 468 (923)
T ss_pred ccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh-ccCCCccceEEEEeccHH
Confidence 9999999999999999999988742 233478999999999999999987 679999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcCcccchhhHHHHHHHHHHHHHHccCCCCCCCCccccc-
Q 001607 442 EEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQ- 520 (1045)
Q Consensus 442 Q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~il~~L~rLRqiC~HP~L~~~~~~~~~- 520 (1045)
|+.+|+++.+. .++...++ . ...++..+..||++||||.|.........
T Consensus 469 QR~~Y~~fl~s--~~v~~i~n--------g--------------------~~~~l~Gi~iLrkICnHPdll~~~~~~~~~ 518 (923)
T KOG0387|consen 469 QRRLYQRFLNS--SEVNKILN--------G--------------------KRNCLSGIDILRKICNHPDLLDRRDEDEKQ 518 (923)
T ss_pred HHHHHHHHhhh--HHHHHHHc--------C--------------------CccceechHHHHhhcCCcccccCccccccc
Confidence 99999998753 11111111 1 12467788899999999999876421111
Q ss_pred --CC-----CCCHHHHHHHHHHHHHHhhhhhcchHHHhhhhHHHHHHHHHhHHH-HHHHHHHHH-----HHHHHHhhccC
Q 001607 521 --QS-----PLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQ-AVSLYKEAM-----AVVEEHSEDFR 587 (1045)
Q Consensus 521 --~~-----~~t~~elL~~Ll~~~~~e~~~~~rkvlifsq~~a~L~ii~~~~~~-a~~~y~~~l-----~~~~~~~~~f~ 587 (1045)
.. ....-+++..|+.....+| +++++|+|...||+||+..+.. ....|.... ..++..+++|+
T Consensus 519 ~~D~~g~~k~sGKm~vl~~ll~~W~kqg----~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fn 594 (923)
T KOG0387|consen 519 GPDYEGDPKRSGKMKVLAKLLKDWKKQG----DRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFN 594 (923)
T ss_pred CCCcCCChhhcchHHHHHHHHHHHhhCC----CEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhc
Confidence 11 1122368888888888877 7999999999999999998874 455554433 47888899998
Q ss_pred CCCCcCc--------eeEeeCC----------cCCcchhhhhh-hhhhcCCCCceEEEeccccCCccccchhHhhhhccc
Q 001607 588 LDPLLNI--------HLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVS 648 (1045)
Q Consensus 588 ~d~~~~~--------~~~~nl~----------~~np~~~~QA~-R~hriGq~~~v~~~r~~~~~t~ee~~~~~~k~k~~~ 648 (1045)
.|...++ +.+.||+ ||||..|+||. |||||||+|+|.||||+|.|||||++...+=-|--.
T Consensus 595 e~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~L 674 (923)
T KOG0387|consen 595 EDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFL 674 (923)
T ss_pred CCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHH
Confidence 8876544 6677777 89999999999 999999999999999999999999987766554433
Q ss_pred c
Q 001607 649 R 649 (1045)
Q Consensus 649 ~ 649 (1045)
.
T Consensus 675 t 675 (923)
T KOG0387|consen 675 T 675 (923)
T ss_pred H
Confidence 3
No 5
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=2.9e-71 Score=638.61 Aligned_cols=375 Identities=22% Similarity=0.272 Sum_probs=297.8
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 221 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 221 ~~~tLIV~P~SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
.||.|||||+|+++||.+||.+|| |+|+|..|+|+...|...+.... ..-..|||++|||..+....+ +
T Consensus 448 ~gpHLVVvPsSTleNWlrEf~kwC--Psl~Ve~YyGSq~ER~~lR~~i~-~~~~~ydVllTTY~la~~~kd--------D 516 (941)
T KOG0389|consen 448 PGPHLVVVPSSTLENWLREFAKWC--PSLKVEPYYGSQDERRELRERIK-KNKDDYDVLLTTYNLAASSKD--------D 516 (941)
T ss_pred CCCcEEEecchhHHHHHHHHHHhC--CceEEEeccCcHHHHHHHHHHHh-ccCCCccEEEEEeecccCChH--------H
Confidence 489999999999999999999999 89999999999766533222222 222389999999999875321 1
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCChhhhhhcccccCCCCCC
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 380 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~LL~FL~p~~~~ 380 (1045)
+ +.|....|++||.||||++||..|.+++.+..++|.+|++|||||+||++.||++||.|+-|..|.
T Consensus 517 R-------------sflk~~~~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~ 583 (941)
T KOG0389|consen 517 R-------------SFLKNQKFNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFD 583 (941)
T ss_pred H-------------HHHHhccccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhh
Confidence 1 458888999999999999999999999999999999999999999999999999999999999998
Q ss_pred Ch-HHHHHHHcCCCc-CCc-------hhhHHHHHHHHHHhhhhcccccccccCCCCCceEEEEEecCCHHHHHHHHHHHH
Q 001607 381 IS-RWWIEVIRDPYE-NGD-------VGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHE 451 (1045)
Q Consensus 381 ~~-~~f~~~~~~p~~-~~~-------~~~~~~L~~~l~~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Q~~~Y~~i~~ 451 (1045)
+. ..+...|...-. .++ ...+.+.+.+++||+|||.|.+|++. ||||+.+|.+|+|++.|+.+|..+.+
T Consensus 584 ~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~~--LPpK~~~Ie~c~mse~Q~~~Y~~~~~ 661 (941)
T KOG0389|consen 584 SSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLKSQVLKQ--LPPKIQRIEYCEMSEKQKQLYDELIE 661 (941)
T ss_pred ccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCccceeEeeecchHHHHHHHHHHH
Confidence 54 455555543211 121 23577888999999999999999887 99999999999999999999998765
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcCcccchhhHHHHHHHHHHHHHHccCCCCCCCCccc-------------
Q 001607 452 TCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRS------------- 518 (1045)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~il~~L~rLRqiC~HP~L~~~~~~~------------- 518 (1045)
... ..... .+.++ .... -+.||+||++.|||-|.+.-...
T Consensus 662 ~~~-----------~~~~~------~~~ns---------~~~~-~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e 714 (941)
T KOG0389|consen 662 LYD-----------VKLNE------VSKNS---------ELKS-GNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNE 714 (941)
T ss_pred HHh-----------hhccc------ccccc---------cccc-chHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCc
Confidence 420 00000 01110 0011 46899999999999985432211
Q ss_pred --------------------------------ccCCCC--------CHHHHHHHHHHHHHHhhhhhcchHHHhhhhHHHH
Q 001607 519 --------------------------------LQQSPL--------SMDEILMVLIGKTKIEGEEALRKLVMALNGLAGI 558 (1045)
Q Consensus 519 --------------------------------~~~~~~--------t~~elL~~Ll~~~~~e~~~~~rkvlifsq~~a~L 558 (1045)
+..-.+ ..=..|..||.+++.+| ++||+||||+.||
T Consensus 715 ~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G----~RVLiFSQFTqmL 790 (941)
T KOG0389|consen 715 PAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKG----DRVLIFSQFTQML 790 (941)
T ss_pred hhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcC----CEEEEeeHHHHHH
Confidence 000000 00125788888888887 8999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHH-----HHHHHhhccCCCCCcCc--------eeEeeCC----------cCCcchhhhhh-hh
Q 001607 559 ALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRLDPLLNI--------HLHHNLT----------EILPMVANCAT-EL 614 (1045)
Q Consensus 559 ~ii~~~~~~a~~~y~~~l~-----~~~~~~~~f~~d~~~~~--------~~~~nl~----------~~np~~~~QA~-R~ 614 (1045)
||++-.+......|.+..+ .|+..+++|..|...++ +.|+||+ ++||.+|.||. ||
T Consensus 791 DILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRc 870 (941)
T KOG0389|consen 791 DILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRC 870 (941)
T ss_pred HHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHH
Confidence 9999999888887776554 78899999998876544 5677776 79999999999 99
Q ss_pred hhcCCCCceEEEeccccCCccccchhHhhhhccccccC
Q 001607 615 SQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREEN 652 (1045)
Q Consensus 615 hriGq~~~v~~~r~~~~~t~ee~~~~~~k~k~~~~~~~ 652 (1045)
||+||+|||+||||||++||||.|+.++|+|...+..-
T Consensus 871 HRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~l 908 (941)
T KOG0389|consen 871 HRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADL 908 (941)
T ss_pred HhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhh
Confidence 99999999999999999999999999999999998753
No 6
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=4.5e-71 Score=656.53 Aligned_cols=374 Identities=23% Similarity=0.325 Sum_probs=303.6
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 221 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 221 ~~~tLIV~P~SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
.-|.|||||++|..+|+.|+.+|+ |.++|..|.|....+.. ......+++|+||||+++++|.+.
T Consensus 1031 ~~PSLIVCPsTLtGHW~~E~~kf~--pfL~v~~yvg~p~~r~~-----lR~q~~~~~iiVtSYDv~RnD~d~-------- 1095 (1549)
T KOG0392|consen 1031 RLPSLIVCPSTLTGHWKSEVKKFF--PFLKVLQYVGPPAERRE-----LRDQYKNANIIVTSYDVVRNDVDY-------- 1095 (1549)
T ss_pred cCCeEEECCchhhhHHHHHHHHhc--chhhhhhhcCChHHHHH-----HHhhccccceEEeeHHHHHHHHHH--------
Confidence 358999999999999999999999 78999999998665422 345566789999999999999864
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCChhhhhhcccccCCCCCC
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 380 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~LL~FL~p~~~~ 380 (1045)
|.++.|.++|+||+|.|||..++.+++++.|++.||++||||||||++.|||+|++||.|+.+|
T Consensus 1096 ----------------l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLG 1159 (1549)
T KOG0392|consen 1096 ----------------LIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLG 1159 (1549)
T ss_pred ----------------HHhcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccC
Confidence 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHcCCCcCC------------chhhHHHHHHHHHHhhhhcccccccccCCCCCceEEEEEecCCHHHHHHHHH
Q 001607 381 ISRWWIEVIRDPYENG------------DVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQS 448 (1045)
Q Consensus 381 ~~~~f~~~~~~p~~~~------------~~~~~~~L~~~l~~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Q~~~Y~~ 448 (1045)
+.+.|.+.|.+|+... +..+++.||+..=|||+||+|+||..+ ||||..+..+|+|||.|+++|+.
T Consensus 1160 tEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~D--LPpKIIQDyyCeLs~lQ~kLY~d 1237 (1549)
T KOG0392|consen 1160 TEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKD--LPPKIIQDYYCELSPLQKKLYRD 1237 (1549)
T ss_pred cHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh--CChhhhhheeeccCHHHHHHHHH
Confidence 9999999999998652 234888999999999999999999877 99999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcCcccchhhHHHHHHHHHHHHHHccCCCCCCCC----ccccc----
Q 001607 449 QHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSG----LRSLQ---- 520 (1045)
Q Consensus 449 i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~il~~L~rLRqiC~HP~L~~~~----~~~~~---- 520 (1045)
+.++.... .....+ +...+.+ + ..++|++.|--||+.||||.|+... +....
T Consensus 1238 f~~~~k~~----~~~~~d--------~~~~S~g------t--~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~ 1297 (1549)
T KOG0392|consen 1238 FVKKAKQC----VSSQID--------GGEESLG------T--DKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLA 1297 (1549)
T ss_pred HHHHhccc----cccccc--------cchhccC------c--chHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHH
Confidence 86541111 111000 1000111 1 2689999999999999999997553 11100
Q ss_pred CCCCCH--------HHHHHHHHHHHHHhhh----------hhcchHHHhhhhHHHHHHHHHhHHHHHH---HHHHHH---
Q 001607 521 QSPLSM--------DEILMVLIGKTKIEGE----------EALRKLVMALNGLAGIALIEKNLSQAVS---LYKEAM--- 576 (1045)
Q Consensus 521 ~~~~t~--------~elL~~Ll~~~~~e~~----------~~~rkvlifsq~~a~L~ii~~~~~~a~~---~y~~~l--- 576 (1045)
.-..+. -..|..|+..+-..-. -.+|++|||.|+..||+++++++-++-. .|-+..
T Consensus 1298 ~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSV 1377 (1549)
T KOG0392|consen 1298 HFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSV 1377 (1549)
T ss_pred HhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCC
Confidence 000011 1345566655443210 2689999999999999999998766622 132333
Q ss_pred --HHHHHHhhccCCCCCcCc--------eeEeeCC----------cCCcchhhhhh-hhhhcCCCCceEEEeccccCCcc
Q 001607 577 --AVVEEHSEDFRLDPLLNI--------HLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIE 635 (1045)
Q Consensus 577 --~~~~~~~~~f~~d~~~~~--------~~~~nl~----------~~np~~~~QA~-R~hriGq~~~v~~~r~~~~~t~e 635 (1045)
+.|++.+++|+.||...+ +.|.||+ ||||++|.||+ |||||||+|.|.|||+||+||+|
T Consensus 1378 pp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLE 1457 (1549)
T KOG0392|consen 1378 PPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLE 1457 (1549)
T ss_pred CcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHH
Confidence 388999999999986444 6689998 99999999999 99999999999999999999999
Q ss_pred ccchhHhhhhcc
Q 001607 636 TCDENARKCQRV 647 (1045)
Q Consensus 636 e~~~~~~k~k~~ 647 (1045)
|++..++|=|+-
T Consensus 1458 EKVMgLQkFKmn 1469 (1549)
T KOG0392|consen 1458 EKVMGLQKFKMN 1469 (1549)
T ss_pred HHHhhHHHHhhH
Confidence 999999998863
No 7
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1.5e-69 Score=672.98 Aligned_cols=366 Identities=20% Similarity=0.257 Sum_probs=293.9
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 221 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 221 ~~~tLIV~P~SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
.+|+|||||+|++.||.+||.+|+ |.+++++|+|....+.... ........+|||||||+++.++..
T Consensus 219 ~gp~LIVvP~SlL~nW~~Ei~kw~--p~l~v~~~~G~~~eR~~~~--~~~~~~~~~dVvITSYe~l~~e~~--------- 285 (1033)
T PLN03142 219 TGPHMVVAPKSTLGNWMNEIRRFC--PVLRAVKFHGNPEERAHQR--EELLVAGKFDVCVTSFEMAIKEKT--------- 285 (1033)
T ss_pred CCCEEEEeChHHHHHHHHHHHHHC--CCCceEEEeCCHHHHHHHH--HHHhcccCCCcceecHHHHHHHHH---------
Confidence 479999999999999999999999 7899999999865321100 011123569999999999988652
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCChhhhhhcccccCCCCCC
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 380 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~LL~FL~p~~~~ 380 (1045)
.|..+.|++||+||||+|||..|+++++++.+++.+||+|||||++|++.|||+||+||.|+.|+
T Consensus 286 ---------------~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~ 350 (1033)
T PLN03142 286 ---------------ALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFS 350 (1033)
T ss_pred ---------------HhccCCCCEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCC
Confidence 47788999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHcCCCcCCchhhHHHHHHHHHHhhhhcccccccccCCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 001607 381 ISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREV 460 (1045)
Q Consensus 381 ~~~~f~~~~~~p~~~~~~~~~~~L~~~l~~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Q~~~Y~~i~~~~~~~~~~~ 460 (1045)
+...|...|..+...+....+..|+.+++|||+||+|++|... |||+.+.+++|.||+.|+++|+.+.......+
T Consensus 351 s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~--LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l--- 425 (1033)
T PLN03142 351 SAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKG--LPPKKETILKVGMSQMQKQYYKALLQKDLDVV--- 425 (1033)
T ss_pred CHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhh--CCCceeEEEeeCCCHHHHHHHHHHHHHHHHHH---
Confidence 9999999998765556667888999999999999999999655 99999999999999999999999876532211
Q ss_pred HHHHHHHHhhccCCCCCCCCCCcCcccchhhHHHHHHHHHHHHHHccCCCCCCCCcccccCC-------CCCHHHHHHHH
Q 001607 461 IQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQS-------PLSMDEILMVL 533 (1045)
Q Consensus 461 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~il~~L~rLRqiC~HP~L~~~~~~~~~~~-------~~t~~elL~~L 533 (1045)
+ . ......+++.+++||++||||+|+.+........ ....-.+|+.|
T Consensus 426 -~--------~-----------------g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkL 479 (1033)
T PLN03142 426 -N--------A-----------------GGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKL 479 (1033)
T ss_pred -h--------c-----------------cccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHH
Confidence 0 0 0113468999999999999999976543211000 01122466777
Q ss_pred HHHHHHhhhhhcchHHHhhhhHHHHHHHHHhHHHHHHHHHH-----HHHHHHHHhhccCCCCCc---Cc------eeEee
Q 001607 534 IGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKE-----AMAVVEEHSEDFRLDPLL---NI------HLHHN 599 (1045)
Q Consensus 534 l~~~~~e~~~~~rkvlifsq~~a~L~ii~~~~~~a~~~y~~-----~l~~~~~~~~~f~~d~~~---~~------~~~~n 599 (1045)
+.+++..+ ++||||||++.++++|++.+......|.. ....+++.++.|+.+... .| +.|+|
T Consensus 480 L~~Lk~~g----~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 480 LPKLKERD----SRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred HHHHHhcC----CeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 77666554 89999999999999999988665444422 224777888888754321 11 23444
Q ss_pred CC----------cCCcchhhhhh-hhhhcCCCCceEEEeccccCCccccchhHhhhhcccc
Q 001607 600 LT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSR 649 (1045)
Q Consensus 600 l~----------~~np~~~~QA~-R~hriGq~~~v~~~r~~~~~t~ee~~~~~~k~k~~~~ 649 (1045)
|. +|||+++.||+ |||||||+++|.||||++.+||||.+...+.+|....
T Consensus 556 Lt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld 616 (1033)
T PLN03142 556 LATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALD 616 (1033)
T ss_pred hhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 44 69999999999 9999999999999999999999999999998887764
No 8
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=2e-68 Score=625.03 Aligned_cols=232 Identities=25% Similarity=0.426 Sum_probs=200.7
Q ss_pred CcEEEEeCchhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccch
Q 001607 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 301 (1045)
Q Consensus 222 ~~tLIV~P~SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~ 301 (1045)
||.|||||.|++-||+-|+++|| |+++++.|.|+.+.+...++ ....-..|.|.||||.++..|+.
T Consensus 666 GPHLIVVpTsviLnWEMElKRwc--PglKILTYyGs~kErkeKRq--gW~kPnaFHVCItSYklv~qd~~---------- 731 (1958)
T KOG0391|consen 666 GPHLIVVPTSVILNWEMELKRWC--PGLKILTYYGSHKERKEKRQ--GWAKPNAFHVCITSYKLVFQDLT---------- 731 (1958)
T ss_pred CCceEEeechhhhhhhHHHhhhC--CcceEeeecCCHHHHHHHhh--cccCCCeeEEeehhhHHHHhHHH----------
Confidence 89999999999999999999999 89999999999776543221 22233568899999999999874
Q ss_pred hhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCChhhhhhcccccCCCCCCC
Q 001607 302 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381 (1045)
Q Consensus 302 ~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~LL~FL~p~~~~~ 381 (1045)
.+.+..|.++||||||+|||.+|++++++..+++.+|++|||||+||++.|||+|++||.|..|.+
T Consensus 732 --------------AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~s 797 (1958)
T KOG0391|consen 732 --------------AFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFAS 797 (1958)
T ss_pred --------------HHHhhccceeehhhhhhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhh
Confidence 377889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHcCCCcC---C----chhhHHHHHHHHHHhhhhcccccccccCCCCCceEEEEEecCCHHHHHHHHHHHHHHH
Q 001607 382 SRWWIEVIRDPYEN---G----DVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCV 454 (1045)
Q Consensus 382 ~~~f~~~~~~p~~~---~----~~~~~~~L~~~l~~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Q~~~Y~~i~~~~~ 454 (1045)
...|+.+|.+|... + +...+.+||++++||+|||+|.||.++ ||.|.|+|+.|.||..||.+|+++..+..
T Consensus 798 hd~fk~wfsnPltgmiEgsqeyn~klV~RLHkVlrPfiLRRlK~dVEKQ--lpkKyEHvv~CrLSkRQR~LYDDfmsq~~ 875 (1958)
T KOG0391|consen 798 HDIFKPWFSNPLTGMIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVEKQ--LPKKYEHVVKCRLSKRQRALYDDFMSQPG 875 (1958)
T ss_pred hhhHHHHhcCcchhhcccchhhchHHHHHHHHHhHHHHHHHHHHHHHHh--cchhhhhheeeehhhhHHHHHHHHhhccc
Confidence 99999999998754 2 345678999999999999999999665 99999999999999999999998743211
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCcCcccchhhHHHHHHHHHHHHHHccCCCC
Q 001607 455 GYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQV 511 (1045)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~il~~L~rLRqiC~HP~L 511 (1045)
. ...+...+..+|++.||+||++||||-|
T Consensus 876 T----------------------------KetLkSGhfmsVlnilmqLrKvCNHPnL 904 (1958)
T KOG0391|consen 876 T----------------------------KETLKSGHFMSVLNILMQLRKVCNHPNL 904 (1958)
T ss_pred h----------------------------hhHhhcCchhHHHHHHHHHHHHcCCCCc
Confidence 0 0012223568999999999999999987
No 9
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.3e-66 Score=592.61 Aligned_cols=400 Identities=24% Similarity=0.355 Sum_probs=296.4
Q ss_pred cEEEEeCchhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccchh
Q 001607 223 ATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRR 302 (1045)
Q Consensus 223 ~tLIV~P~SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~~ 302 (1045)
+||||||+||+.||..||++.+....|+|++|||.++ +.+.+..+..||||||||..+.+.-..-..
T Consensus 385 ~TLII~PaSli~qW~~Ev~~rl~~n~LsV~~~HG~n~------r~i~~~~L~~YDvViTTY~lva~~~~~e~~------- 451 (901)
T KOG4439|consen 385 KTLIICPASLIHQWEAEVARRLEQNALSVYLYHGPNK------REISAKELRKYDVVITTYNLVANKPDDELE------- 451 (901)
T ss_pred CeEEeCcHHHHHHHHHHHHHHHhhcceEEEEecCCcc------ccCCHHHHhhcceEEEeeeccccCCchhhh-------
Confidence 6999999999999999999999888899999999964 245788999999999999998872211000
Q ss_pred hhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCChhhhhhcccccCCCCCCCh
Q 001607 303 FMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSIS 382 (1045)
Q Consensus 303 ~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~LL~FL~p~~~~~~ 382 (1045)
-....++|.++.|.||||||||.|||+.|+.+.+++.|.+.+|||||||||||++-|+|+|+.||+..||++.
T Consensus 452 -------~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~ 524 (901)
T KOG4439|consen 452 -------EGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDL 524 (901)
T ss_pred -------cccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchH
Confidence 0112378999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcCCchhhHHHHHHHHHHhhhhcccccccc---cCCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 001607 383 RWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSD---ELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYARE 459 (1045)
Q Consensus 383 ~~f~~~~~~p~~~~~~~~~~~L~~~l~~~mlRRtK~dV~~---el~LPpk~e~vv~v~lS~~Q~~~Y~~i~~~~~~~~~~ 459 (1045)
..|++.+..+- .....++.-+.++.||||||...-. ...||++...++.++|+..|...|+-+.+... .
T Consensus 525 ~~Wke~i~~~s----~~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~ask----k 596 (901)
T KOG4439|consen 525 KQWKENIDNMS----KGGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASK----K 596 (901)
T ss_pred HHHHHhccCcc----ccchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHH----H
Confidence 99999887543 2335667888999999999987632 35699999999999999999999998876543 4
Q ss_pred HHHHHHHHHhhccCCCCCCCC--------CCcCc------c----cchhhHHHHHHHHHHHHHHccCCCCCCCCcccccC
Q 001607 460 VIQRLKDNILKRNVPGHASSD--------ALYNP------I----ITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQ 521 (1045)
Q Consensus 460 ~~~~~~~~~~~~~~~g~~~~~--------~~~~~------~----~~~~~~~~il~~L~rLRqiC~HP~L~~~~~~~~~~ 521 (1045)
++.++...-..++..+.+.+. ...++ + ......+.||.+|+||||+||||.+..+++.....
T Consensus 597 ~~kq~L~~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~ 676 (901)
T KOG4439|consen 597 LFKQFLLQREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEF 676 (901)
T ss_pred HHHHHHHhhhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHh
Confidence 444432222222211111110 00000 0 01234567999999999999999775554432110
Q ss_pred CCC-----------------------C--------------HHHH---------HHHHHHHHHHhhhhhcchHHHhhhhH
Q 001607 522 SPL-----------------------S--------------MDEI---------LMVLIGKTKIEGEEALRKLVMALNGL 555 (1045)
Q Consensus 522 ~~~-----------------------t--------------~~el---------L~~Ll~~~~~e~~~~~rkvlifsq~~ 555 (1045)
..+ | .+++ +...+..........-.++++.||++
T Consensus 677 ~~~g~~~sde~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwt 756 (901)
T KOG4439|consen 677 QMNGGDDSDEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWT 756 (901)
T ss_pred hhcCcchhhhhhhhhhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHH
Confidence 000 0 0000 11111111112233447999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHH-----HHHHHHhhccCCCCC---------cCceeEeeCC----------cCCcchhhhh
Q 001607 556 AGIALIEKNLSQAVSLYKEAM-----AVVEEHSEDFRLDPL---------LNIHLHHNLT----------EILPMVANCA 611 (1045)
Q Consensus 556 a~L~ii~~~~~~a~~~y~~~l-----~~~~~~~~~f~~d~~---------~~~~~~~nl~----------~~np~~~~QA 611 (1045)
.+|++++..+......|.... ..+++.++.|....- ..-+++.||. .|||+-+.||
T Consensus 757 svLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQA 836 (901)
T KOG4439|consen 757 SVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQA 836 (901)
T ss_pred HHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHH
Confidence 999999999888877775433 356666666643322 2225566665 6999999999
Q ss_pred h-hhhhcCCCCceEEEeccccCCccccchhHhhhhccccc
Q 001607 612 T-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSRE 650 (1045)
Q Consensus 612 ~-R~hriGq~~~v~~~r~~~~~t~ee~~~~~~k~k~~~~~ 650 (1045)
. |++|+||+|+|+|||+++.||||+++..++.+|.-.-.
T Consensus 837 cDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~ 876 (901)
T KOG4439|consen 837 CDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAK 876 (901)
T ss_pred HHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHh
Confidence 9 99999999999999999999999999999988765443
No 10
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=2.3e-66 Score=569.37 Aligned_cols=393 Identities=28% Similarity=0.385 Sum_probs=301.3
Q ss_pred CcEEEEeCchhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccch
Q 001607 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 301 (1045)
Q Consensus 222 ~~tLIV~P~SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~ 301 (1045)
.|||||||.-.+.||.+||.+|+. +++++++|||.++. .....+..||+|+|||.++.+.+..- ..|
T Consensus 232 a~tLVvaP~VAlmQW~nEI~~~T~-gslkv~~YhG~~R~-------~nikel~~YDvVLTty~vvEs~yRk~---~~G-- 298 (791)
T KOG1002|consen 232 APTLVVAPTVALMQWKNEIERHTS-GSLKVYIYHGAKRD-------KNIKELMNYDVVLTTYAVVESVYRKQ---DYG-- 298 (791)
T ss_pred CCeeEEccHHHHHHHHHHHHHhcc-CceEEEEEeccccc-------CCHHHhhcCcEEEEecHHHHHHHHhc---ccc--
Confidence 579999999999999999999997 89999999999764 36788999999999999998876431 001
Q ss_pred hhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCChhhhhhcccccCCCCCCC
Q 001607 302 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381 (1045)
Q Consensus 302 ~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~LL~FL~p~~~~~ 381 (1045)
+.|. .-..+-+++|+.+.|.|||+||||.||+..|.+++++..|.+.+||||||||+||++.|||+|++||+..||..
T Consensus 299 -frrK-ngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsy 376 (791)
T KOG1002|consen 299 -FRRK-NGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSY 376 (791)
T ss_pred -cccc-CCcccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchh
Confidence 1110 11123358899999999999999999999999999999999999999999999999999999999999999864
Q ss_pred h-------------------------------HHHHHHHcCCCcCC-----chhhHHHHHHHHHHhhhhcccccccccCC
Q 001607 382 S-------------------------------RWWIEVIRDPYENG-----DVGAMEFTHKFFKEIMCRSSKVHVSDELQ 425 (1045)
Q Consensus 382 ~-------------------------------~~f~~~~~~p~~~~-----~~~~~~~L~~~l~~~mlRRtK~dV~~el~ 425 (1045)
+ -+|......|+... +..+....+.+++.+|+||||-.-++++.
T Consensus 377 yfc~~cdc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLg 456 (791)
T KOG1002|consen 377 YFCTKCDCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLG 456 (791)
T ss_pred hhhhhccccccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccC
Confidence 3 14555555666542 23355577899999999999999999999
Q ss_pred CCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcCcccchhhHHHHHHHHHHHHHH
Q 001607 426 LPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQA 505 (1045)
Q Consensus 426 LPpk~e~vv~v~lS~~Q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~il~~L~rLRqi 505 (1045)
|||+...+..=-|+.+|..+|+.++...... ++.+... |. --.++++|+.+|+||||+
T Consensus 457 LPPRiv~vRrD~fn~eE~D~YeSLY~dSkrk----fntyiee-------Gv-----------vlNNYAnIF~LitRmRQ~ 514 (791)
T KOG1002|consen 457 LPPRIVTVRRDFFNEEEKDLYESLYKDSKRK----FNTYIEE-------GV-----------VLNNYANIFTLITRMRQA 514 (791)
T ss_pred CCccceeeehhhhhhHHHHHHHHHHHhhHHh----hhhHHhh-------hh-----------hhhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999988754332 3332211 10 123588999999999999
Q ss_pred ccCCCCCCCCccc-c---c------------------CC------------------------------C----------
Q 001607 506 CCHPQVGSSGLRS-L---Q------------------QS------------------------------P---------- 523 (1045)
Q Consensus 506 C~HP~L~~~~~~~-~---~------------------~~------------------------------~---------- 523 (1045)
..||+|+..+... + . .+ +
T Consensus 515 aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~al 594 (791)
T KOG1002|consen 515 ADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPAL 594 (791)
T ss_pred ccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhh
Confidence 9999985431100 0 0 00 0
Q ss_pred ----------------CCHHH-----HHHHHHHHHHHhhh-hhcchHHHhhhhHHHHHHHHHhHHHHHHHH---HHHH--
Q 001607 524 ----------------LSMDE-----ILMVLIGKTKIEGE-EALRKLVMALNGLAGIALIEKNLSQAVSLY---KEAM-- 576 (1045)
Q Consensus 524 ----------------~t~~e-----lL~~Ll~~~~~e~~-~~~rkvlifsq~~a~L~ii~~~~~~a~~~y---~~~l-- 576 (1045)
+.|++ -++.|++++.--.+ +.--|-++||||+.||++|.-.+..++... .+.+
T Consensus 595 ek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~ 674 (791)
T KOG1002|consen 595 EKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSP 674 (791)
T ss_pred hhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCCh
Confidence 01111 12334443322111 112378899999999999999888886542 3333
Q ss_pred HHHHHHhhccCCCCCcCc--------eeEeeCC----------cCCcchhhhhh-hhhhcCCCCceEEEeccccCCcccc
Q 001607 577 AVVEEHSEDFRLDPLLNI--------HLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETC 637 (1045)
Q Consensus 577 ~~~~~~~~~f~~d~~~~~--------~~~~nl~----------~~np~~~~QA~-R~hriGq~~~v~~~r~~~~~t~ee~ 637 (1045)
..+.+.++.|..|+.-.+ ++-.||+ ||||+++-||+ |+|||||.+||.|-||+-++||||+
T Consensus 675 ~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~k 754 (791)
T KOG1002|consen 675 AARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEK 754 (791)
T ss_pred HHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHH
Confidence 467777888988886433 5667776 89999999999 9999999999999999999999999
Q ss_pred chhHhhhhcccccc
Q 001607 638 DENARKCQRVSREE 651 (1045)
Q Consensus 638 ~~~~~k~k~~~~~~ 651 (1045)
|..++|+|.-.-.+
T Consensus 755 IieLQeKKa~miha 768 (791)
T KOG1002|consen 755 IIELQEKKANMIHA 768 (791)
T ss_pred HHHHHHHHhhhhhh
Confidence 99999998765543
No 11
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=1.8e-67 Score=595.65 Aligned_cols=357 Identities=24% Similarity=0.312 Sum_probs=298.3
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccc----hhhhcCccEEEEehHHHHhhcccCCCC
Q 001607 221 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMD----ISELVGADIVLTTYDVLKEDLSHDSDR 296 (1045)
Q Consensus 221 ~~~tLIV~P~SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~----~~~l~~~dVVItTY~~l~~d~~~~~~~ 296 (1045)
-||+|||+|+|+++||.+||.+|+ |.++++.|.|+...+..-++... ....+.++||||||.++..|..
T Consensus 617 wGPFLVVtpaStL~NWaqEisrFl--P~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDek----- 689 (1185)
T KOG0388|consen 617 WGPFLVVTPASTLHNWAQEISRFL--PSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEK----- 689 (1185)
T ss_pred CCceEEeehHHHHhHHHHHHHHhC--ccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHH-----
Confidence 489999999999999999999999 89999999999776532222111 2345779999999999998763
Q ss_pred CccchhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCChhhhhhcccccCC
Q 001607 297 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 376 (1045)
Q Consensus 297 ~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~LL~FL~p 376 (1045)
.|.++.|.++||||||.||+..|.+++.+..++|++|++||||||||+..|||+||+|+.|
T Consensus 690 -------------------y~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMP 750 (1185)
T KOG0388|consen 690 -------------------YLQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMP 750 (1185)
T ss_pred -------------------HHHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhh
Confidence 3889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHcCCCcCC-------chhhHHHHHHHHHHhhhhcccccccccCCCCCceEEEEEecCCHHHHHHHHHH
Q 001607 377 SPFSISRWWIEVIRDPYENG-------DVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 449 (1045)
Q Consensus 377 ~~~~~~~~f~~~~~~p~~~~-------~~~~~~~L~~~l~~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Q~~~Y~~i 449 (1045)
..|.+...|.++|...++.. +...+.+||.+|+||||||.|+||..+ |-.|++..++|.||..|+.+|+.+
T Consensus 751 sLFDshneFseWFSKdIEshAe~~~tlneqqL~RLH~ILKPFMLRRvKkdV~sE--Lg~Kteidv~CdLs~RQ~~lYq~i 828 (1185)
T KOG0388|consen 751 SLFDSHNEFSEWFSKDIESHAEMNTTLNEQQLQRLHAILKPFMLRRVKKDVISE--LGQKTEIDVYCDLSYRQKVLYQEI 828 (1185)
T ss_pred HhhhchHHHHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHHHH--hccceEEEEEechhHHHHHHHHHH
Confidence 99999999999998887753 567889999999999999999999877 999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcCcccchhhHHHHHHHHHHHHHHccCCCCCCCC-------------c
Q 001607 450 HETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSG-------------L 516 (1045)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~il~~L~rLRqiC~HP~L~~~~-------------~ 516 (1045)
...+. ...+..++|+||++||||.|+... +
T Consensus 829 k~~iS-------------------------------------~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl 871 (1185)
T KOG0388|consen 829 KRSIS-------------------------------------SMEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNL 871 (1185)
T ss_pred HHHhh-------------------------------------HHHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCH
Confidence 65432 123445899999999999873210 0
Q ss_pred cc---ccC-------------------------------------------------------CCC---CHHH-------
Q 001607 517 RS---LQQ-------------------------------------------------------SPL---SMDE------- 528 (1045)
Q Consensus 517 ~~---~~~-------------------------------------------------------~~~---t~~e------- 528 (1045)
.+ .++ ++. +.++
T Consensus 872 ~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr 951 (1185)
T KOG0388|consen 872 GDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTR 951 (1185)
T ss_pred HHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHH
Confidence 00 000 000 0000
Q ss_pred --------------------------------------------------------------------------------
Q 001607 529 -------------------------------------------------------------------------------- 528 (1045)
Q Consensus 529 -------------------------------------------------------------------------------- 528 (1045)
T Consensus 952 ~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~FitdSgKL~ 1031 (1185)
T KOG0388|consen 952 NLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTFITDSGKLV 1031 (1185)
T ss_pred HhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccceecCcHHhhhcccccee
Confidence
Q ss_pred HHHHHHHHHHHhhhhhcchHHHhhhhHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHhhccCC-CCCcCc------ee
Q 001607 529 ILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAM-----AVVEEHSEDFRL-DPLLNI------HL 596 (1045)
Q Consensus 529 lL~~Ll~~~~~e~~~~~rkvlifsq~~a~L~ii~~~~~~a~~~y~~~l-----~~~~~~~~~f~~-d~~~~~------~~ 596 (1045)
+|+.|+.+++.+| |+||+|.|++.|+++|++++......|-+.. ..+.+.+.+++. |.|.++ +.
T Consensus 1032 ~LDeLL~kLkaeg----HRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGL 1107 (1185)
T KOG0388|consen 1032 VLDELLPKLKAEG----HRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGL 1107 (1185)
T ss_pred eHHHHHHHhhcCC----ceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcc
Confidence 4788999999998 9999999999999999999988877775433 366777888876 344444 66
Q ss_pred EeeCC----------cCCcchhhhhh-hhhhcCCCCceEEEeccccCCccccchhHhhhhc
Q 001607 597 HHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQR 646 (1045)
Q Consensus 597 ~~nl~----------~~np~~~~QA~-R~hriGq~~~v~~~r~~~~~t~ee~~~~~~k~k~ 646 (1045)
++||+ ||||..|.||+ ||||.||+++|+|||+++.+||||++.+.+++|.
T Consensus 1108 GINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~ 1168 (1185)
T KOG0388|consen 1108 GINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKD 1168 (1185)
T ss_pred cccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHH
Confidence 77877 89999999999 9999999999999999999999999999999874
No 12
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=9.1e-65 Score=596.74 Aligned_cols=367 Identities=21% Similarity=0.271 Sum_probs=299.4
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 221 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 221 ~~~tLIV~P~SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
.||+|||||.|++.+|..||.+|+ |++..++|.|....|..- .......+|+|++|||+.+.++.
T Consensus 444 ~GP~LvivPlstL~NW~~Ef~kWa--PSv~~i~YkGtp~~R~~l---~~qir~gKFnVLlTtyEyiikdk---------- 508 (1157)
T KOG0386|consen 444 QGPFLIIVPLSTLVNWSSEFPKWA--PSVQKIQYKGTPQQRSGL---TKQQRHGKFNVLLTTYEYIIKDK---------- 508 (1157)
T ss_pred CCCeEEeccccccCCchhhccccc--cceeeeeeeCCHHHHhhH---HHHHhcccceeeeeeHHHhcCCH----------
Confidence 489999999999999999999999 899999999997765321 12233388999999999998853
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHH-HhccCcEEEEeccCCCCChhhhhhcccccCCCCC
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMAL-RLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~-~L~a~~Rw~LTGTPiqN~l~DL~~LL~FL~p~~~ 379 (1045)
..|.++.|.++||||+|++||..++.+..+. ...+.+|++|||||+||++.|||+||+||-|..|
T Consensus 509 --------------~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IF 574 (1157)
T KOG0386|consen 509 --------------ALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIF 574 (1157)
T ss_pred --------------HHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchh
Confidence 4699999999999999999999999999998 6789999999999999999999999999999999
Q ss_pred CChHHHHHHHcCCCcCCch----------hhHHHHHHHHHHhhhhcccccccccCCCCCceEEEEEecCCHHHHHHHHHH
Q 001607 380 SISRWWIEVIRDPYENGDV----------GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 449 (1045)
Q Consensus 380 ~~~~~f~~~~~~p~~~~~~----------~~~~~L~~~l~~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Q~~~Y~~i 449 (1045)
.+...|..+|..||...+. -.+.+||.+|+||++||.|++|..+ ||.|++.++.|.||..|+.+|..+
T Consensus 575 nS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~--LPdKve~viKC~mSalQq~lY~~m 652 (1157)
T KOG0386|consen 575 NSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQE--LPDKVEDVIKCDMSALQQSLYKQM 652 (1157)
T ss_pred hhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhh--CchhhhHhhheehhhhhHhhhHHH
Confidence 9999999999999876331 2567999999999999999999666 999999999999999999999986
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcCcccchhhHHHHHHHHHHHHHHccCCCCCCCCccccc--CCC----
Q 001607 450 HETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQ--QSP---- 523 (1045)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~il~~L~rLRqiC~HP~L~~~~~~~~~--~~~---- 523 (1045)
.+.- ....++ --....+..+++.+|.||++||||+++..-..+.. ..+
T Consensus 653 ~~~g----------------------~l~~d~----~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL~ 706 (1157)
T KOG0386|consen 653 QNKG----------------------QLLKDT----AKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKDLV 706 (1157)
T ss_pred HhCC----------------------CCCcCc----hhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhHHH
Confidence 4321 000000 00122245789999999999999999733211111 111
Q ss_pred --CCHHHHHHHHHHHHHHhhhhhcchHHHhhhhHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHhhccCCCCC---cC
Q 001607 524 --LSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRLDPL---LN 593 (1045)
Q Consensus 524 --~t~~elL~~Ll~~~~~e~~~~~rkvlifsq~~a~L~ii~~~~~~a~~~y~~~l~-----~~~~~~~~f~~d~~---~~ 593 (1045)
....++|+.++++++.-+ |+|++|+|++.+++|++.+|......|....+ .+.+..+.|+.... .+
T Consensus 707 R~sGKfELLDRiLPKLkatg----HRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~F 782 (1157)
T KOG0386|consen 707 RVSGKFELLDRILPKLKATG----HRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIF 782 (1157)
T ss_pred HhccHHHHHHhhhHHHHhcC----cchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeee
Confidence 234578999999988877 99999999999999999999999998876654 44455566644221 12
Q ss_pred c------eeEeeCC----------cCCcchhhhhh-hhhhcCCCCceEEEeccccCCccccchhHhhhhccc
Q 001607 594 I------HLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVS 648 (1045)
Q Consensus 594 ~------~~~~nl~----------~~np~~~~QA~-R~hriGq~~~v~~~r~~~~~t~ee~~~~~~k~k~~~ 648 (1045)
+ +.+.||- ||||..|.||+ |||||||+++|.|+|++|.+++||.|+..++.|.--
T Consensus 783 llstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~ 854 (1157)
T KOG0386|consen 783 LLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDV 854 (1157)
T ss_pred eeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcCc
Confidence 1 4455554 89999999999 999999999999999999999999999998876543
No 13
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=6.9e-56 Score=527.76 Aligned_cols=367 Identities=17% Similarity=0.189 Sum_probs=282.9
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhcCCCCCeEEEEeCCCCCcc-cccccc-chhhhcCccEEEEehHHHHhhcccCCCCCc
Q 001607 221 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSL-SDTSIM-DISELVGADIVLTTYDVLKEDLSHDSDRHE 298 (1045)
Q Consensus 221 ~~~tLIV~P~SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~-~~~~~~-~~~~l~~~dVVItTY~~l~~d~~~~~~~~~ 298 (1045)
....|||||++|+.+|.+||.+|..+..+..+.+.|..+..- ...... .....-.+-|.|.||++++.+...
T Consensus 298 ~~k~lVV~P~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~------ 371 (776)
T KOG0390|consen 298 INKPLVVAPSSLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK------ 371 (776)
T ss_pred ccccEEEccHHHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH------
Confidence 357899999999999999999999655788888888765310 000000 011122356999999999976532
Q ss_pred cchhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCChhhhhhcccccCCCC
Q 001607 299 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 378 (1045)
Q Consensus 299 ~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~LL~FL~p~~ 378 (1045)
+.....+++|+||||++||..|.+.+++..|++++|++|||||+||++.|+|++|+|++|+.
T Consensus 372 ------------------il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~ 433 (776)
T KOG0390|consen 372 ------------------ILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGF 433 (776)
T ss_pred ------------------HhcCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhh
Confidence 66778999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHcCCCcCCch-----------hhHHHHHHHHHHhhhhcccccccccCCCCCceEEEEEecCCHHHHHHHH
Q 001607 379 FSISRWWIEVIRDPYENGDV-----------GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQ 447 (1045)
Q Consensus 379 ~~~~~~f~~~~~~p~~~~~~-----------~~~~~L~~~l~~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Q~~~Y~ 447 (1045)
++....|++.+..|+.++.. +.+..|..+...|++||+-+...+. ||++.++|+.|.+|+.|+.+|.
T Consensus 434 Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~--LP~k~e~vv~~n~t~~Q~~~~~ 511 (776)
T KOG0390|consen 434 LGSISSFKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLKY--LPGKYEYVVFCNPTPIQKELYK 511 (776)
T ss_pred ccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhh--CCCceeEEEEeCCcHHHHHHHH
Confidence 99999999999999877422 2366799999999999999777665 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcCcccchhhHHHHHHHHHHHHHHccCCCCCC------CC--c-cc
Q 001607 448 SQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGS------SG--L-RS 518 (1045)
Q Consensus 448 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~il~~L~rLRqiC~HP~L~~------~~--~-~~ 518 (1045)
.+.+.. . .. . -.+..+..++.|+++||||.|.. +. + .+
T Consensus 512 ~l~~~~-~--~~---~---------------------------~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~ 558 (776)
T KOG0390|consen 512 KLLDSM-K--MR---T---------------------------LKGYALELITKLKKLCNHPSLLLLCEKTEKEKAFKNP 558 (776)
T ss_pred HHHHHH-H--hh---h---------------------------hhcchhhHHHHHHHHhcCHHhhcccccccccccccCh
Confidence 876532 0 00 0 01226788999999999999974 10 0 00
Q ss_pred ---ccCC---------C-CCHHHHHHHHHHHHHHhhhhhcchHHHhhhhHHHHHHHHHhHHHHHHHH---HH--HHHHHH
Q 001607 519 ---LQQS---------P-LSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLY---KE--AMAVVE 580 (1045)
Q Consensus 519 ---~~~~---------~-~t~~elL~~Ll~~~~~e~~~~~rkvlifsq~~a~L~ii~~~~~~a~~~y---~~--~l~~~~ 580 (1045)
+... . ...--+|..|+..++ ++.+.++++-+|.+..++++++.+......+ .+ ....|+
T Consensus 559 ~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~---ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq 635 (776)
T KOG0390|consen 559 ALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIR---EKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQ 635 (776)
T ss_pred HhhhcccccccccccchhhhHHHHHHHHHHHHh---hhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHH
Confidence 0000 0 011123444444444 3445788888999999999998776663322 22 335788
Q ss_pred HHhhccCCCCCc-Cc--------eeEeeCC----------cCCcchhhhhh-hhhhcCCCCceEEEeccccCCccccchh
Q 001607 581 EHSEDFRLDPLL-NI--------HLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDEN 640 (1045)
Q Consensus 581 ~~~~~f~~d~~~-~~--------~~~~nl~----------~~np~~~~QA~-R~hriGq~~~v~~~r~~~~~t~ee~~~~ 640 (1045)
..++.|+..+.+ ++ +.|+||. +|||++|.||+ ||||+||+|+|.||||++.|||||.+.+
T Consensus 636 ~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~q 715 (776)
T KOG0390|consen 636 KLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQ 715 (776)
T ss_pred HHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHH
Confidence 888999766554 22 6677777 89999999999 9999999999999999999999999999
Q ss_pred Hhhhhcccc
Q 001607 641 ARKCQRVSR 649 (1045)
Q Consensus 641 ~~k~k~~~~ 649 (1045)
.+-.|....
T Consensus 716 rq~~K~~lS 724 (776)
T KOG0390|consen 716 RQTHKEGLS 724 (776)
T ss_pred HHHHhhhhh
Confidence 887766544
No 14
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=7e-52 Score=497.49 Aligned_cols=370 Identities=31% Similarity=0.431 Sum_probs=296.7
Q ss_pred CCCcEEEEeCchhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCcc
Q 001607 220 ATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 299 (1045)
Q Consensus 220 ~~~~tLIV~P~SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~ 299 (1045)
..+.+|||||.+++.||..|+.+...++.+.+++|+| + ......+..||||||||+++..
T Consensus 188 ~~kttLivcp~s~~~qW~~elek~~~~~~l~v~v~~g-r--------~kd~~el~~~dVVltTy~il~~----------- 247 (674)
T KOG1001|consen 188 EFKTTLIVCPTSLLTQWKTELEKVTEEDKLSIYVYHG-R--------TKDKSELNSYDVVLTTYDILKN----------- 247 (674)
T ss_pred ccCceeEecchHHHHHHHHHHhccCCccceEEEEecc-c--------ccccchhcCCceEEeeHHHhhc-----------
Confidence 4578999999999999999998888888999999999 1 1256788999999999999986
Q ss_pred chhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCChhhhhhcccccCCCCC
Q 001607 300 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379 (1045)
Q Consensus 300 ~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~LL~FL~p~~~ 379 (1045)
++|..+.|.|||+||||.++|++++.++++..|.+.+||||||||+||+++|||+++.|+..+||
T Consensus 248 ---------------~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~ 312 (674)
T KOG1001|consen 248 ---------------SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPY 312 (674)
T ss_pred ---------------ccccceeEEEEEeccccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCc
Confidence 24888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHcCCCcCCc-hhhHHHHHHHHHHhhhhccccccc---ccCCCCCceEEEEEecCCHHHHHHHHHHHHHHHH
Q 001607 380 SISRWWIEVIRDPYENGD-VGAMEFTHKFFKEIMCRSSKVHVS---DELQLPPQEECVSWLTFSPIEEHFYQSQHETCVG 455 (1045)
Q Consensus 380 ~~~~~f~~~~~~p~~~~~-~~~~~~L~~~l~~~mlRRtK~dV~---~el~LPpk~e~vv~v~lS~~Q~~~Y~~i~~~~~~ 455 (1045)
....+|...+..|+..+. ......++.+++.+|+||+|..-. ..+.|||++..++++.++..|+.+|..+...+..
T Consensus 313 ~~~~~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~ 392 (674)
T KOG1001|consen 313 CDQNYFKLLIQDPDERNKYKEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRN 392 (674)
T ss_pred hhhHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhh
Confidence 999999999999999887 788889999999999999997432 2457999999999999999999999998876555
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCcCcccchhhHHHHHHHHHHHHHHccCCCCCCCCcccccCC-------------
Q 001607 456 YAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQS------------- 522 (1045)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~il~~L~rLRqiC~HP~L~~~~~~~~~~~------------- 522 (1045)
........ | ....+++.++..+++|||+||||.++.........+
T Consensus 393 ~~~~~~~~-----------~-----------~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~~i~~ 450 (674)
T KOG1001|consen 393 QFSNYANE-----------G-----------TVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIRLIVD 450 (674)
T ss_pred HHHHHhhh-----------c-----------hhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccchHHHHHHHH
Confidence 44332221 0 012357899999999999999999844221110000
Q ss_pred -------------------CCCHHHH------------------------HHHHHH-----------------------H
Q 001607 523 -------------------PLSMDEI------------------------LMVLIG-----------------------K 536 (1045)
Q Consensus 523 -------------------~~t~~el------------------------L~~Ll~-----------------------~ 536 (1045)
...|... -..++. .
T Consensus 451 l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~~~~~~~s~ki~~~~~~ 530 (674)
T KOG1001|consen 451 LSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSIINDLLPESSKIYAFLKI 530 (674)
T ss_pred HhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccchhhhccchhhhhHHHHHH
Confidence 0000000 001111 0
Q ss_pred H-HHhhhhhcchHHHhhhhHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHhhccCCCCCcCc--------eeEeeCC-
Q 001607 537 T-KIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLY-----KEAMAVVEEHSEDFRLDPLLNI--------HLHHNLT- 601 (1045)
Q Consensus 537 ~-~~e~~~~~rkvlifsq~~a~L~ii~~~~~~a~~~y-----~~~l~~~~~~~~~f~~d~~~~~--------~~~~nl~- 601 (1045)
+ ..++.+. .++++|||++.++++++-.+......| +..+..+..-...|..|+.+.+ ..++||.
T Consensus 531 l~~~~~s~~-~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~ 609 (674)
T KOG1001|consen 531 LQAKEMSEQ-PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTA 609 (674)
T ss_pred HhhccCCCC-CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhh
Confidence 0 1122233 499999999999999998776554433 2334566667778888888665 5566666
Q ss_pred ---------cCCcchhhhhh-hhhhcCCCCceEEEeccccCCccccchhHhhhhcc
Q 001607 602 ---------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRV 647 (1045)
Q Consensus 602 ---------~~np~~~~QA~-R~hriGq~~~v~~~r~~~~~t~ee~~~~~~k~k~~ 647 (1045)
+|||..++||+ |||||||+++|+|+|++.++|+||+++..++||+-
T Consensus 610 a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~ 665 (674)
T KOG1001|consen 610 ASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKRE 665 (674)
T ss_pred hhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHH
Confidence 89999999999 99999999999999999999999999999999864
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=3.7e-52 Score=531.64 Aligned_cols=375 Identities=25% Similarity=0.330 Sum_probs=292.2
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhcCCCCCe-EEEEeCCCCCccccccccchhhhc------CccEEEEehHHHHh---hc
Q 001607 221 TGATLIVCPAPILAQWDAEITRHTRPGSLK-TCIYEGARNSSLSDTSIMDISELV------GADIVLTTYDVLKE---DL 290 (1045)
Q Consensus 221 ~~~tLIV~P~SLl~qW~~Ei~k~~~~~~l~-v~vy~G~~~~~~~~~~~~~~~~l~------~~dVVItTY~~l~~---d~ 290 (1045)
.+|+|||||.|++.||.+|+.+|. |.++ +.+|+|..... ........... .+|+++|||+.++. +.
T Consensus 390 ~~~~liv~p~s~~~nw~~e~~k~~--~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~ 465 (866)
T COG0553 390 LGPALIVVPASLLSNWKREFEKFA--PDLRLVLVYHGEKSEL--DKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDH 465 (866)
T ss_pred CCCeEEEecHHHHHHHHHHHhhhC--ccccceeeeeCCcccc--cHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhH
Confidence 479999999999999999999999 7888 99999986420 00011122222 28999999999998 44
Q ss_pred ccCCCCCccchhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCChhhhhhc
Q 001607 291 SHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGL 370 (1045)
Q Consensus 291 ~~~~~~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~L 370 (1045)
..+..+.|+++|+||||+|||..|..++++..+++.+||+|||||++|++.|||++
T Consensus 466 ------------------------~~l~~~~~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl 521 (866)
T COG0553 466 ------------------------GGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSL 521 (866)
T ss_pred ------------------------HHHhhceeeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHH
Confidence 34888999999999999999999999999999999999999999999999999999
Q ss_pred cc-ccCCCCCC-ChHHHHHHHcCCCcCCch--------hhHHHHHHHHHHhhhhccccc--ccccCCCCCceEEEEEecC
Q 001607 371 LR-FLKSSPFS-ISRWWIEVIRDPYENGDV--------GAMEFTHKFFKEIMCRSSKVH--VSDELQLPPQEECVSWLTF 438 (1045)
Q Consensus 371 L~-FL~p~~~~-~~~~f~~~~~~p~~~~~~--------~~~~~L~~~l~~~mlRRtK~d--V~~el~LPpk~e~vv~v~l 438 (1045)
++ |+.|+.++ +...|...|..|...... .....|+.+++||++||+|.+ |..+ ||++.+.++.|.+
T Consensus 522 ~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~--Lp~k~e~~~~~~l 599 (866)
T COG0553 522 LQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFILRRTKEDVEVLKE--LPPKIEKVLECEL 599 (866)
T ss_pred HHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHhhcccccchhHHHh--CChhhhhhhhhcc
Confidence 99 99999999 558899999988766432 344558899999999999999 6544 9999999999999
Q ss_pred CHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcCcccchhhHHHHHHHHHHHHHHccCCCCCCCC
Q 001607 439 SPIEEHFYQSQHE---TCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSG 515 (1045)
Q Consensus 439 S~~Q~~~Y~~i~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~il~~L~rLRqiC~HP~L~~~~ 515 (1045)
++.|+.+|..... .....+...... .. .. ..... ....+++.+++|||+|+||.++..+
T Consensus 600 ~~~q~~~y~~~~~~~~~~~~~~~~~~~~-------~~-----~~----~~~~~--~~~~~l~~~~~lr~~~~~p~l~~~~ 661 (866)
T COG0553 600 SEEQRELYEALLEGAEKNQQLLEDLEKA-------DS-----DE----NRIGD--SELNILALLTRLRQICNHPALVDEG 661 (866)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cc-----cc----ccccc--hhhHHHHHHHHHHHhccCccccccc
Confidence 9999999999877 322222111110 00 00 00000 2568999999999999999998765
Q ss_pred cccccC---------------------CCCCHHHHHHHHH-HHHHHhhhhhcc--hHHHhhhhHHHHHHHHHhHHHHHHH
Q 001607 516 LRSLQQ---------------------SPLSMDEILMVLI-GKTKIEGEEALR--KLVMALNGLAGIALIEKNLSQAVSL 571 (1045)
Q Consensus 516 ~~~~~~---------------------~~~t~~elL~~Ll-~~~~~e~~~~~r--kvlifsq~~a~L~ii~~~~~~a~~~ 571 (1045)
...... ..+..-..+++++ ..+..++ + ++++|+||+.++++++..+......
T Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~----~~~kvlifsq~t~~l~il~~~l~~~~~~ 737 (866)
T COG0553 662 LEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEG----HYHKVLIFSQFTPVLDLLEDYLKALGIK 737 (866)
T ss_pred cccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhc----ccccEEEEeCcHHHHHHHHHHHHhcCCc
Confidence 111110 0002335666777 6666666 6 9999999999999999988777632
Q ss_pred H---HHH--HHHHHHHhhccCCCCC--------cCceeEeeCC----------cCCcchhhhhh-hhhhcCCCCceEEEe
Q 001607 572 Y---KEA--MAVVEEHSEDFRLDPL--------LNIHLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEK 627 (1045)
Q Consensus 572 y---~~~--l~~~~~~~~~f~~d~~--------~~~~~~~nl~----------~~np~~~~QA~-R~hriGq~~~v~~~r 627 (1045)
| .+. ...+++.++.|..++- ...+.+.||. ||||+++.||+ |||||||+++|.|||
T Consensus 738 ~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r 817 (866)
T COG0553 738 YVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYR 817 (866)
T ss_pred EEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEE
Confidence 2 333 3467788888887632 1225566666 79999999999 999999999999999
Q ss_pred ccccCCccccchhHhhhhcc
Q 001607 628 AFKIHSIETCDENARKCQRV 647 (1045)
Q Consensus 628 ~~~~~t~ee~~~~~~k~k~~ 647 (1045)
+++++||||++...+..|+-
T Consensus 818 ~i~~~tiEe~i~~~~~~K~~ 837 (866)
T COG0553 818 LITRGTIEEKILELQEKKQE 837 (866)
T ss_pred eecCCcHHHHHHHHHHHHHH
Confidence 99999999999999999843
No 16
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=2.7e-49 Score=458.42 Aligned_cols=385 Identities=18% Similarity=0.208 Sum_probs=273.2
Q ss_pred CCCcEEEEeCchhHHHHHHHHHHhcCC----CCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCC
Q 001607 220 ATGATLIVCPAPILAQWDAEITRHTRP----GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSD 295 (1045)
Q Consensus 220 ~~~~tLIV~P~SLl~qW~~Ei~k~~~~----~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~ 295 (1045)
.++++|||||.+++.||.+||.+|... ..+.|.-+...++. ..+...-..+.....|.|+.|++++.-.....
T Consensus 727 g~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~--e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~- 803 (1567)
T KOG1015|consen 727 GFKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRP--EERSYMLQRWQEDGGVMIIGYDMYRNLAQGRN- 803 (1567)
T ss_pred CCceEEEEcchHHHHHHHHHHHHhcccccccccceeehhhhccCh--HHHHHHHHHHHhcCCEEEEehHHHHHHhcccc-
Confidence 457899999999999999999999942 13445444444331 12223344566777899999999998543211
Q ss_pred CCccchhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCChhhhhhcccccC
Q 001607 296 RHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLK 375 (1045)
Q Consensus 296 ~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~LL~FL~ 375 (1045)
.+.+.... .....|..-..++||+||||.|||..|.+++++..+++.+||+|||||+||+|.|+|.+++|+.
T Consensus 804 --vk~rk~ke------~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVK 875 (1567)
T KOG1015|consen 804 --VKSRKLKE------IFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVK 875 (1567)
T ss_pred --hhhhHHHH------HHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcc
Confidence 01111000 0112355566899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHcCCCcCCch------------hhHHHHHHHHHHhhhhcccccccccCCCCCceEEEEEecCCHHHH
Q 001607 376 SSPFSISRWWIEVIRDPYENGDV------------GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEE 443 (1045)
Q Consensus 376 p~~~~~~~~f~~~~~~p~~~~~~------------~~~~~L~~~l~~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Q~ 443 (1045)
|+.+|+...|++.|.+||..|.. ....-|+..|..|+-|+--.-+... |||++++|+.|.||+.|.
T Consensus 876 e~lLGs~~EfrNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~--LPPK~eyVi~vrltelQ~ 953 (1567)
T KOG1015|consen 876 ENLLGSIKEFRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKF--LPPKHEYVIAVRLTELQC 953 (1567)
T ss_pred cccccCcHHHHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc--CCCceeEEEEEeccHHHH
Confidence 99999999999999999998742 1334688899999998877777655 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcCcccchhhHHHHHHHHHHHHHHccCCCCCC----------
Q 001607 444 HFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGS---------- 513 (1045)
Q Consensus 444 ~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~il~~L~rLRqiC~HP~L~~---------- 513 (1045)
.+|+..++... ..++ +... ++.-...++...-.|++|-+||....
T Consensus 954 ~LYq~yL~h~~-----------------~~G~----d~eg----~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR 1008 (1567)
T KOG1015|consen 954 KLYQYYLDHLT-----------------GVGN----DSEG----GRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKR 1008 (1567)
T ss_pred HHHHHHHhhcc-----------------ccCC----cccc----ccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcc
Confidence 99998765100 0011 1111 11124678999999999999997410
Q ss_pred ---C----Ccc-------------------------c-----c------c----------------CC--------CCC-
Q 001607 514 ---S----GLR-------------------------S-----L------Q----------------QS--------PLS- 525 (1045)
Q Consensus 514 ---~----~~~-------------------------~-----~------~----------------~~--------~~t- 525 (1045)
. .+- + . + .+ +-+
T Consensus 1009 ~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~ 1088 (1567)
T KOG1015|consen 1009 YFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVS 1088 (1567)
T ss_pred cccccchhccccCCCccccccccccchhhcccccccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchH
Confidence 0 000 0 0 0 00 000
Q ss_pred --HH-------------------HHH-------------HHHHHHHHHhhhhhcchHHHhhhhHHHHHHHHHhHHHHHHH
Q 001607 526 --MD-------------------EIL-------------MVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSL 571 (1045)
Q Consensus 526 --~~-------------------elL-------------~~Ll~~~~~e~~~~~rkvlifsq~~a~L~ii~~~~~~a~~~ 571 (1045)
+. +++ ..||-.+...|++.+.|+|||||.+..|++|+..+..+...
T Consensus 1089 l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~ 1168 (1567)
T KOG1015|consen 1089 LKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSRE 1168 (1567)
T ss_pred HHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhccc
Confidence 00 000 11333455678888999999999999999999988765332
Q ss_pred HH----------------------H-----HHHHHHHHhhccCCCCCcCc----------eeEeeCC----------cCC
Q 001607 572 YK----------------------E-----AMAVVEEHSEDFRLDPLLNI----------HLHHNLT----------EIL 604 (1045)
Q Consensus 572 y~----------------------~-----~l~~~~~~~~~f~~d~~~~~----------~~~~nl~----------~~n 604 (1045)
-+ . .-..++...+.|+.....+. ..++||. -||
T Consensus 1169 gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWN 1248 (1567)
T KOG1015|consen 1169 GKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWN 1248 (1567)
T ss_pred CccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccC
Confidence 11 0 11255556666643322111 2344443 599
Q ss_pred cchhhhhh-hhhhcCCCCceEEEeccccCCccccchhHh
Q 001607 605 PMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENAR 642 (1045)
Q Consensus 605 p~~~~QA~-R~hriGq~~~v~~~r~~~~~t~ee~~~~~~ 642 (1045)
|.-|.|++ |+||-||+|||.||||+..||+||+|...+
T Consensus 1249 PSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQ 1287 (1567)
T KOG1015|consen 1249 PSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQ 1287 (1567)
T ss_pred CccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHH
Confidence 99999999 999999999999999999999999987654
No 17
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=1.9e-46 Score=419.63 Aligned_cols=241 Identities=32% Similarity=0.527 Sum_probs=189.6
Q ss_pred CcEEEEeCchhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccch
Q 001607 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 301 (1045)
Q Consensus 222 ~~tLIV~P~SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~ 301 (1045)
+++|||||++++.||..|+.+|+.++++++++|.|.... ..........++++||||+++......
T Consensus 59 ~~~LIv~P~~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~vvi~ty~~~~~~~~~--------- 124 (299)
T PF00176_consen 59 KKTLIVVPSSLLSQWKEEIEKWFDPDSLRVIIYDGDSER-----RRLSKNQLPKYDVVITTYETLRKARKK--------- 124 (299)
T ss_dssp S-EEEEE-TTTHHHHHHHHHHHSGT-TS-EEEESSSCHH-----HHTTSSSCCCSSEEEEEHHHHH--TST---------
T ss_pred cceeEeeccchhhhhhhhhcccccccccccccccccccc-----ccccccccccceeeecccccccccccc---------
Confidence 469999999999999999999997668999999998611 112345567899999999999911100
Q ss_pred hhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCChhhhhhcccccCCCCCCC
Q 001607 302 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 381 (1045)
Q Consensus 302 ~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~LL~FL~p~~~~~ 381 (1045)
.....+..++|++||+||||.+||..|..++++..|.+.++|+|||||++|++.|||+++.||+|+.+++
T Consensus 125 ----------~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~ 194 (299)
T PF00176_consen 125 ----------KDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSD 194 (299)
T ss_dssp ----------HTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSS
T ss_pred ----------ccccccccccceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeecccccc
Confidence 0013467788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHcCCCcCCchhhHHHHHHHHHHhhhhcccccccccCCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHH
Q 001607 382 SRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVI 461 (1045)
Q Consensus 382 ~~~f~~~~~~p~~~~~~~~~~~L~~~l~~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Q~~~Y~~i~~~~~~~~~~~~ 461 (1045)
...|.+.+..+..........+|..+++++|+||+++++ +..||++.+.++.++||+.|+.+|+.+..........
T Consensus 195 ~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~~r~~~~d~--~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~-- 270 (299)
T PF00176_consen 195 RRSFKKWFYRPDKENSYENIERLRELLSEFMIRRTKKDV--EKELPPKIEHVINVELSPEQRELYNELLKEARENLKQ-- 270 (299)
T ss_dssp HHHHHHHTHHHHHTHHHHHHHHHHHHHCCCEECHCGGGG--CTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT--
T ss_pred chhhhhhhhhhccccccccccccccccchhhhhhhcccc--cccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHh--
Confidence 999999886653344567788999999999999999999 4459999999999999999999999876543221100
Q ss_pred HHHHHHHhhccCCCCCCCCCCcCcccchhhHHHHHHHHHHHHHHccCCCCC
Q 001607 462 QRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVG 512 (1045)
Q Consensus 462 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~il~~L~rLRqiC~HP~L~ 512 (1045)
...........++..+++|||+||||.|+
T Consensus 271 ----------------------~~~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 271 ----------------------SSRKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp -----------------------T--TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred ----------------------hcccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 00123456789999999999999999874
No 18
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=2.8e-40 Score=365.15 Aligned_cols=339 Identities=16% Similarity=0.150 Sum_probs=230.8
Q ss_pred CcEEEEeCchhHHHHHHHHHHhcCCCC-CeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 222 GATLIVCPAPILAQWDAEITRHTRPGS-LKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~P~SLl~qW~~Ei~k~~~~~~-l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
+|.|||||+|+...|.+++.+|+ |+ ..+.+..+..+. .+.-....-|+|+||+.+.....
T Consensus 242 wplliVcPAsvrftWa~al~r~l--ps~~pi~vv~~~~D~--------~~~~~t~~~v~ivSye~ls~l~~--------- 302 (689)
T KOG1000|consen 242 WPLLIVCPASVRFTWAKALNRFL--PSIHPIFVVDKSSDP--------LPDVCTSNTVAIVSYEQLSLLHD--------- 302 (689)
T ss_pred CcEEEEecHHHhHHHHHHHHHhc--ccccceEEEecccCC--------ccccccCCeEEEEEHHHHHHHHH---------
Confidence 68999999999999999999999 44 445555555331 11112334599999999987542
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHh--ccCcEEEEeccCCCCChhhhhhcccccCCCC
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL--YAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 378 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L--~a~~Rw~LTGTPiqN~l~DL~~LL~FL~p~~ 378 (1045)
.|..-.|..||+||+|++|+..+++++++.-+ .+.|.++|||||-..++.|||.++..+++..
T Consensus 303 ---------------~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tl 367 (689)
T KOG1000|consen 303 ---------------ILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTL 367 (689)
T ss_pred ---------------HHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccc
Confidence 36667799999999999999999999999876 5899999999999999999999999999999
Q ss_pred CCChHHHHHHHcCCCc------CCchhhHHHHHHHHH-HhhhhcccccccccCCCCCceEEEEEecCCHHHHHHHHHHHH
Q 001607 379 FSISRWWIEVIRDPYE------NGDVGAMEFTHKFFK-EIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHE 451 (1045)
Q Consensus 379 ~~~~~~f~~~~~~p~~------~~~~~~~~~L~~~l~-~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Q~~~Y~~i~~ 451 (1045)
|.++..|-..|++.-. ..+-.++++|+.+|. .+|+||+|+||+.+ ||||...++.+. .+.+-..-+++..
T Consensus 368 fp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q--LPpKrr~Vv~~~-~gr~da~~~~lv~ 444 (689)
T KOG1000|consen 368 FPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQ--LPPKRREVVYVS-GGRIDARMDDLVK 444 (689)
T ss_pred cccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh--CCccceEEEEEc-CCccchHHHHHHH
Confidence 9999999998886422 123456777887765 57999999999887 999966655543 3333333333322
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcCcccchhhHHHHHHHHHHHHHHccCCCCCCCCcccccCCCCCHHHHHH
Q 001607 452 TCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILM 531 (1045)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~il~~L~rLRqiC~HP~L~~~~~~~~~~~~~t~~elL~ 531 (1045)
...... ..+.. -.+-...++.-++. +.....-+.+
T Consensus 445 ~a~~~t-------~~~~~----------------------e~~~~~l~l~y~~t----------------giaK~~av~e 479 (689)
T KOG1000|consen 445 AAADYT-------KVNSM----------------------ERKHESLLLFYSLT----------------GIAKAAAVCE 479 (689)
T ss_pred Hhhhcc-------hhhhh----------------------hhhhHHHHHHHHHh----------------cccccHHHHH
Confidence 211100 00000 00111112222111 0001111111
Q ss_pred HHHHHHHHhhhhhcchHHHhhhhHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHhhccCCCCCcCc--------eeEe
Q 001607 532 VLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAM-----AVVEEHSEDFRLDPLLNI--------HLHH 598 (1045)
Q Consensus 532 ~Ll~~~~~e~~~~~rkvlifsq~~a~L~ii~~~~~~a~~~y~~~l-----~~~~~~~~~f~~d~~~~~--------~~~~ 598 (1045)
-++..-. -+++..+|+|+|..-..+|+-|+.++.....-.-+.. ..++..+..|+.+.-..+ +++.
T Consensus 480 yi~~~~~-l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGL 558 (689)
T KOG1000|consen 480 YILENYF-LPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGL 558 (689)
T ss_pred HHHhCcc-cccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccce
Confidence 1111000 0334457999999999999999998877644322221 255556677777664333 3333
Q ss_pred eCC----------cCCcchhhhhh-hhhhcCCCCceEEEeccccCCccccchhHhh
Q 001607 599 NLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARK 643 (1045)
Q Consensus 599 nl~----------~~np~~~~QA~-R~hriGq~~~v~~~r~~~~~t~ee~~~~~~k 643 (1045)
.+. .|||-+=.||. |+|||||+-.|.||=|+.++|+.|..=.+..
T Consensus 559 t~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~ 614 (689)
T KOG1000|consen 559 TLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQ 614 (689)
T ss_pred eeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHH
Confidence 333 69999999999 9999999999999999999999997544433
No 19
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=5.2e-39 Score=399.54 Aligned_cols=342 Identities=14% Similarity=0.155 Sum_probs=226.8
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 221 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 221 ~~~tLIV~P~SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
.+++|||||++|+.||..|+.+++ ++.+.+|.+..-.... ......+..+++||+||+.++.+...
T Consensus 199 ~~rvLIVvP~sL~~QW~~El~~kF---~l~~~i~~~~~~~~~~---~~~~~pf~~~~~vI~S~~~l~~~~~~-------- 264 (956)
T PRK04914 199 AERVLILVPETLQHQWLVEMLRRF---NLRFSLFDEERYAEAQ---HDADNPFETEQLVICSLDFLRRNKQR-------- 264 (956)
T ss_pred CCcEEEEcCHHHHHHHHHHHHHHh---CCCeEEEcCcchhhhc---ccccCccccCcEEEEEHHHhhhCHHH--------
Confidence 468999999999999999999888 4778888766422110 01113445689999999999874211
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCCh---HHHHHHHHHHh--ccCcEEEEeccCCCCChhhhhhcccccC
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN---AAAATEMALRL--YAKHRWCITGTPIQRKLDDLYGLLRFLK 375 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~---~S~~~~al~~L--~a~~Rw~LTGTPiqN~l~DL~~LL~FL~ 375 (1045)
...+....|++||+||||++++. .|+.++.+..| +++++++|||||+||++.|+|++|+||+
T Consensus 265 -------------~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLd 331 (956)
T PRK04914 265 -------------LEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLD 331 (956)
T ss_pred -------------HHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhC
Confidence 01255678999999999999953 46678888887 5789999999999999999999999999
Q ss_pred CCCCCChHHHHHHHcC--CC-------cCC---chhhHHHHH---------------------------HHH--------
Q 001607 376 SSPFSISRWWIEVIRD--PY-------ENG---DVGAMEFTH---------------------------KFF-------- 408 (1045)
Q Consensus 376 p~~~~~~~~f~~~~~~--p~-------~~~---~~~~~~~L~---------------------------~~l-------- 408 (1045)
|+.|+++..|.+.... |+ ..+ .......|. +++
T Consensus 332 P~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg 411 (956)
T PRK04914 332 PDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHG 411 (956)
T ss_pred CCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcC
Confidence 9999999999764321 11 011 111111111 111
Q ss_pred -HHhhhhcccccccccCCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcCccc
Q 001607 409 -KEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPII 487 (1045)
Q Consensus 409 -~~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 487 (1045)
.++|+|+++++|. ++|++..+.+.+++.+.....+... .. ..... . +
T Consensus 412 ~~rvm~RntR~~v~---~fp~R~~~~~~l~~~~~y~~~~~~~---~~-------~~~~~----~---------------l 459 (956)
T PRK04914 412 TGRVLFRNTRAAVK---GFPKRELHPIPLPLPEQYQTAIKVS---LE-------ARARD----M---------------L 459 (956)
T ss_pred cceEEEeccHHhhc---CCCcCceeEeecCCCHHHHHHHHHh---HH-------HHHHh----h---------------c
Confidence 2689999999985 4899999999999976543333210 00 00000 0 0
Q ss_pred chhhHHHHHHHHHHHHHHccCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHhhhhhcchHHHhhhhHHHHHHHHHhHHH
Q 001607 488 THAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQ 567 (1045)
Q Consensus 488 ~~~~~~~il~~L~rLRqiC~HP~L~~~~~~~~~~~~~t~~elL~~Ll~~~~~e~~~~~rkvlifsq~~a~L~ii~~~~~~ 567 (1045)
.+ ..++.. +.. .... . .....-+.|..++... ...|+|||+++..+.+.|.+.+..
T Consensus 460 ~p---e~~~~~---~~~--------~~~~--~--~~d~Ki~~L~~~L~~~------~~~KvLVF~~~~~t~~~L~~~L~~ 515 (956)
T PRK04914 460 YP---EQIYQE---FED--------NATW--W--NFDPRVEWLIDFLKSH------RSEKVLVICAKAATALQLEQALRE 515 (956)
T ss_pred CH---HHHHHH---Hhh--------hhhc--c--ccCHHHHHHHHHHHhc------CCCeEEEEeCcHHHHHHHHHHHhh
Confidence 00 011110 000 0000 0 0001123333344322 146999999999999999988843
Q ss_pred H----HHHHHH--HHHHHHHHhhccCCCC--C---------------cCc--eeEeeCCcCCcchhhhhh-hhhhcCCCC
Q 001607 568 A----VSLYKE--AMAVVEEHSEDFRLDP--L---------------LNI--HLHHNLTEILPMVANCAT-ELSQNEQHF 621 (1045)
Q Consensus 568 a----~~~y~~--~l~~~~~~~~~f~~d~--~---------------~~~--~~~~nl~~~np~~~~QA~-R~hriGq~~ 621 (1045)
. ...|.+ ....+++..+.|+.+. . +.+ .++|++. |||....|++ |+||+||++
T Consensus 516 ~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP-~nP~~~eQRIGR~~RiGQ~~ 594 (956)
T PRK04914 516 REGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLP-FNPDLLEQRIGRLDRIGQKH 594 (956)
T ss_pred ccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCC-CCHHHHHHHhcccccCCCCc
Confidence 2 112333 3346666777776532 2 111 4455555 9999999999 999999999
Q ss_pred ceEEEeccccCCccccchhHhhhhc
Q 001607 622 PGCSEKAFKIHSIETCDENARKCQR 646 (1045)
Q Consensus 622 ~v~~~r~~~~~t~ee~~~~~~k~k~ 646 (1045)
+|.||.++.++|++|.+...-++|.
T Consensus 595 ~V~i~~~~~~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 595 DIQIHVPYLEGTAQERLFRWYHEGL 619 (956)
T ss_pred eEEEEEccCCCCHHHHHHHHHhhhc
Confidence 9999999999999999988877654
No 20
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=6.2e-40 Score=374.28 Aligned_cols=393 Identities=17% Similarity=0.226 Sum_probs=262.5
Q ss_pred CCCcEEEEeCchhHHHHHHHHHHhcCC---------CCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhc
Q 001607 220 ATGATLIVCPAPILAQWDAEITRHTRP---------GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDL 290 (1045)
Q Consensus 220 ~~~~tLIV~P~SLl~qW~~Ei~k~~~~---------~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~ 290 (1045)
..+++|+|+|-.++.||..|+..|.++ .++.|+++....+. +..+...-..+.....|+++.|++++--.
T Consensus 311 ~AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT-~~~Rakvi~~Wv~~GGVlLvGYemfRLL~ 389 (1387)
T KOG1016|consen 311 KAKTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKT-FDQRAKVIEQWVQTGGVLLVGYEMFRLLI 389 (1387)
T ss_pred ccceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhh-HHHHHHHHHHHhccCCEEEehHHHHHHHH
Confidence 347899999999999999999999953 14566666544321 11112233456677889999999998754
Q ss_pred ccCCCCCccch----h----------hhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEe
Q 001607 291 SHDSDRHEGDR----R----------FMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCIT 356 (1045)
Q Consensus 291 ~~~~~~~~~~~----~----------~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LT 356 (1045)
..........+ + -.+.+.-|..+.+.|..-..|+||+||+|+|||..+.++.+++.+++++|++||
T Consensus 390 lk~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLT 469 (1387)
T KOG1016|consen 390 LKTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLT 469 (1387)
T ss_pred HhcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEe
Confidence 32111100000 0 000111122344567777899999999999999999999999999999999999
Q ss_pred ccCCCCChhhhhhcccccCCCCCCChHHHHHHHcCCCcCCc-----hh-------hHHHHHHHHHHhhhhcccccccccC
Q 001607 357 GTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGD-----VG-------AMEFTHKFFKEIMCRSSKVHVSDEL 424 (1045)
Q Consensus 357 GTPiqN~l~DL~~LL~FL~p~~~~~~~~f~~~~~~p~~~~~-----~~-------~~~~L~~~l~~~mlRRtK~dV~~el 424 (1045)
|-|+||++-|+|.+++|++|.++|....|...|.+|+..|. ++ ....|+.++..|+-||+-.-+. +
T Consensus 470 GYPLQNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk--~ 547 (1387)
T KOG1016|consen 470 GYPLQNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLK--K 547 (1387)
T ss_pred ccccccchHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHh--h
Confidence 99999999999999999999999999999999999998873 21 3346889999999999988764 4
Q ss_pred CCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcCcccchhhHHHHHHHHHHHHH
Q 001607 425 QLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQ 504 (1045)
Q Consensus 425 ~LPpk~e~vv~v~lS~~Q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~il~~L~rLRq 504 (1045)
-||.+.|+|+.|.+|..||++|+.+.... ++ ++.... ++. .+.|.++.---+
T Consensus 548 ~LP~k~EyViLvr~s~iQR~LY~~Fm~d~----------~r-~~~~~~-----------~~~------~NPLkAF~vCcK 599 (1387)
T KOG1016|consen 548 ILPEKKEYVILVRKSQIQRQLYRNFMLDA----------KR-EIAANN-----------DAV------FNPLKAFSVCCK 599 (1387)
T ss_pred hcccccceEEEEeHHHHHHHHHHHHHHHH----------HH-hhcccc-----------ccc------cChHHHHHHHHH
Confidence 49999999999999999999999864221 11 111111 100 012223333445
Q ss_pred HccCCCCCC---------------------CCccc---------------c--------c--C----------------C
Q 001607 505 ACCHPQVGS---------------------SGLRS---------------L--------Q--Q----------------S 522 (1045)
Q Consensus 505 iC~HP~L~~---------------------~~~~~---------------~--------~--~----------------~ 522 (1045)
|-|||.+.. .+... + . + .
T Consensus 600 IWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e 679 (1387)
T KOG1016|consen 600 IWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEE 679 (1387)
T ss_pred hcCChHHHHHHHHHhhhhhhhhhhHHHHhhhcccccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCccccccc
Confidence 557776410 00000 0 0 0 0
Q ss_pred CCCHHHHHHHHHHHH-----------------HHhhhhhcchHHHhhhhHHHHHHHHHhHHHHHH---------------
Q 001607 523 PLSMDEILMVLIGKT-----------------KIEGEEALRKLVMALNGLAGIALIEKNLSQAVS--------------- 570 (1045)
Q Consensus 523 ~~t~~elL~~Ll~~~-----------------~~e~~~~~rkvlifsq~~a~L~ii~~~~~~a~~--------------- 570 (1045)
..+..+.-.++..+- ..+.-..+.++|+|||-+..|++|+..+...-.
T Consensus 680 ~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~ 759 (1387)
T KOG1016|consen 680 VEKYSDWTFELFENYQEGVLENGPKIVISLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWE 759 (1387)
T ss_pred ccchhhHHHHHHhhhhcccccCCCceEEEEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhh
Confidence 001111222222221 122233457999999999999999876543211
Q ss_pred ---HHHH---HH--HHHHHHhhccCCCCCcC----c-----eeEeeCC----------cCCcchhhhhh-hhhhcCCCCc
Q 001607 571 ---LYKE---AM--AVVEEHSEDFRLDPLLN----I-----HLHHNLT----------EILPMVANCAT-ELSQNEQHFP 622 (1045)
Q Consensus 571 ---~y~~---~l--~~~~~~~~~f~~d~~~~----~-----~~~~nl~----------~~np~~~~QA~-R~hriGq~~~ 622 (1045)
.|-. +. ..++..+++|+..+-.. + ..++||. -|||--+.||. |++|-||+|+
T Consensus 760 ~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~Kp 839 (1387)
T KOG1016|consen 760 KNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKP 839 (1387)
T ss_pred hccceecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCc
Confidence 1211 11 14455555654443211 1 3355554 69999999999 9999999999
Q ss_pred eEEEeccccCCccccchhHhh
Q 001607 623 GCSEKAFKIHSIETCDENARK 643 (1045)
Q Consensus 623 v~~~r~~~~~t~ee~~~~~~k 643 (1045)
.+|||++.-+++|-+|.+.+=
T Consensus 840 cfvYRlVmD~~lEkkIydRQI 860 (1387)
T KOG1016|consen 840 CFVYRLVMDNSLEKKIYDRQI 860 (1387)
T ss_pred eeEEeehhhhhhHHHHHHHHH
Confidence 999999999999999877653
No 21
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=1.1e-39 Score=386.35 Aligned_cols=305 Identities=21% Similarity=0.349 Sum_probs=245.4
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccc-----------------cccchhhhcCccEEEEeh
Q 001607 221 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDT-----------------SIMDISELVGADIVLTTY 283 (1045)
Q Consensus 221 ~~~tLIV~P~SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~-----------------~~~~~~~l~~~dVVItTY 283 (1045)
.+|.||++|.+.+.+|..|+..|+ |.+.+..|+|..+.+.... .......-..+.+.+++|
T Consensus 345 ~~P~Lv~ap~sT~~nwe~e~~~wa--p~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~ 422 (696)
T KOG0383|consen 345 PGPPLVVAPLSTIVNWEREFELWA--PSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSY 422 (696)
T ss_pred CCCceeeccCccccCCCCchhccC--CCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCch
Confidence 479999999999999999999999 7899999999876432100 001112334577888888
Q ss_pred HHHHhhcccCCCCCccchhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCC
Q 001607 284 DVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRK 363 (1045)
Q Consensus 284 ~~l~~d~~~~~~~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~ 363 (1045)
++...+. +.+..+.|..+|+||+|+++|..|..++.+......+++++||||.||+
T Consensus 423 ~~~~~~~------------------------~il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn 478 (696)
T KOG0383|consen 423 ETIEIDQ------------------------SILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNN 478 (696)
T ss_pred hhcccCH------------------------HHHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhh
Confidence 8877654 4689999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccccCCCCCCChHHHHHHHcCCCcCCchhhHHHHHHHHHHhhhhcccccccccCCCCCceEEEEEecCCHHHH
Q 001607 364 LDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEE 443 (1045)
Q Consensus 364 l~DL~~LL~FL~p~~~~~~~~f~~~~~~p~~~~~~~~~~~L~~~l~~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Q~ 443 (1045)
+.+|+++|+||.++.|.+..||.+.|.+- ...+.++.|+.++.|.|+||.|.||.+. +|+|++.++.+.|++.|+
T Consensus 479 ~~el~~ll~flt~~~~~~~~~f~e~~~d~---~~~~~~~~l~~l~~p~~lrr~k~d~l~~--~P~Kte~i~~~~~~~~Q~ 553 (696)
T KOG0383|consen 479 LEELFNLLNFLTPGRFNSLEWFLEEFHDI---SCEEQIKKLHLLLCPHMLRRLKLDVLKP--MPLKTELIGRVELSPCQK 553 (696)
T ss_pred hHHhhhcccccCcccccchhhhhhhcchh---hHHHHHHhhccccCchhhhhhhhhhccC--CCccceeEEEEecCHHHH
Confidence 99999999999999999999999988753 3456788999999999999999999775 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcCcccchhhHHHHHHHHHHHHHHccCCCCCCCCcccccCCC
Q 001607 444 HFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSP 523 (1045)
Q Consensus 444 ~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~il~~L~rLRqiC~HP~L~~~~~~~~~~~~ 523 (1045)
++|+.++.+.....+. ......+++.+|.||++||||++... ...+....
T Consensus 554 ~~yk~~~t~n~~~l~~-----------------------------~~~~~s~~n~~mel~K~~~hpy~~~~-~e~~~~~~ 603 (696)
T KOG0383|consen 554 KYYKKILTRNWQGLLA-----------------------------GVHQYSLLNIVMELRKQCNHPYLSPL-EEPLEENG 603 (696)
T ss_pred HHHHHHHcCChHHHhh-----------------------------cchhHHHHHHHHHHHHhhcCcccCcc-ccccccch
Confidence 9999987654322111 11245789999999999999999876 22221111
Q ss_pred ----------CCHHHHHHHHHHHHHHhhhhhcchHHHhhhhHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHhhccCC
Q 001607 524 ----------LSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRL 588 (1045)
Q Consensus 524 ----------~t~~elL~~Ll~~~~~e~~~~~rkvlifsq~~a~L~ii~~~~~~a~~~y~~~l~-----~~~~~~~~f~~ 588 (1045)
+.+-.+|..|+.+++.+| |+|++|+|++.||||+++.+.... .|....+ .+++.++.|+.
T Consensus 604 ~~~~~~l~k~~~k~~~l~~~~~~l~~~g----hrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~ 678 (696)
T KOG0383|consen 604 EYLGSALIKASGKLTLLLKMLKKLKSSG----HRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNA 678 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc----hhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCC
Confidence 223346667777776666 999999999999999999998888 8877665 66777777764
Q ss_pred CCC
Q 001607 589 DPL 591 (1045)
Q Consensus 589 d~~ 591 (1045)
..-
T Consensus 679 ~~~ 681 (696)
T KOG0383|consen 679 PGS 681 (696)
T ss_pred CCc
Confidence 433
No 22
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=3.5e-24 Score=259.31 Aligned_cols=302 Identities=15% Similarity=0.183 Sum_probs=179.6
Q ss_pred CcEEEEeCchh-HHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 222 GATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~P~SL-l~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
+++|||||.+. +.||.+||.+|+.-+...+..|.|..+.. .....+|+||||+++......... .
T Consensus 299 k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~----------~~~~~~VvVtTYq~l~~~~~r~~~----~ 364 (732)
T TIGR00603 299 KSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKER----------FHGEAGVVVSTYSMVAHTGKRSYE----S 364 (732)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEecCcccc----------cccCCcEEEEEHHHhhcccccchh----h
Confidence 57999999875 78999999999743446677888764321 123578999999999865321000 0
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCChhhhhhccccc-CCCCC
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL-KSSPF 379 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~LL~FL-~p~~~ 379 (1045)
. .....|....|++||+||+|++.+ ....+.+..+++.+||+|||||++++ +.+..+.|+ +|..|
T Consensus 365 ~----------~~l~~l~~~~~gLII~DEvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vy 430 (732)
T TIGR00603 365 E----------KVMEWLTNREWGLILLDEVHVVPA--AMFRRVLTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLY 430 (732)
T ss_pred h----------HHHHHhccccCCEEEEEccccccH--HHHHHHHHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeee
Confidence 0 000124456899999999999964 33445677789999999999999875 444445444 33322
Q ss_pred CChHHHHHHHcCCCcCCchhhHHHHHHHHHHhhhhcccccccccCCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 001607 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYARE 459 (1045)
Q Consensus 380 ~~~~~f~~~~~~p~~~~~~~~~~~L~~~l~~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Q~~~Y~~i~~~~~~~~~~ 459 (1045)
. ..|.+.+.. --|.+-....++|+|++.+..-|.....
T Consensus 431 e--~~~~eLi~~--------------------------------G~LA~~~~~ev~v~~t~~~~~~yl~~~~-------- 468 (732)
T TIGR00603 431 E--ANWMELQKK--------------------------------GFIANVQCAEVWCPMTPEFYREYLRENS-------- 468 (732)
T ss_pred e--cCHHHHHhC--------------------------------CccccceEEEEEecCCHHHHHHHHHhcc--------
Confidence 2 122222211 1256666677999999875444421100
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCcCcccchhhHHHHHHHHHHHHHHccCCCCCCCCcccccCCCCCHHHHHHHHHHHHHH
Q 001607 460 VIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKI 539 (1045)
Q Consensus 460 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~il~~L~rLRqiC~HP~L~~~~~~~~~~~~~t~~elL~~Ll~~~~~ 539 (1045)
. ....+ +..+| ..-+.+..|+...
T Consensus 469 -----------------------------~--~k~~l--------~~~np---------------~K~~~~~~Li~~h-- 492 (732)
T TIGR00603 469 -----------------------------R--KRMLL--------YVMNP---------------NKFRACQFLIRFH-- 492 (732)
T ss_pred -----------------------------h--hhhHH--------hhhCh---------------HHHHHHHHHHHHH--
Confidence 0 00000 11122 0113344444322
Q ss_pred hhhhhcchHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCC-cCc---------------eeEeeCC--
Q 001607 540 EGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPL-LNI---------------HLHHNLT-- 601 (1045)
Q Consensus 540 e~~~~~rkvlifsq~~a~L~ii~~~~~~a~~~y~~~l~~~~~~~~~f~~d~~-~~~---------------~~~~nl~-- 601 (1045)
+..++++|||++.+..+..+...+.............|+...+.|+..+. ..+ .+.+++.
T Consensus 493 --e~~g~kiLVF~~~~~~l~~~a~~L~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~ 570 (732)
T TIGR00603 493 --EQRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSH 570 (732)
T ss_pred --hhcCCeEEEEeCCHHHHHHHHHHcCCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCC
Confidence 23458999999999888888777753332333333567777778864422 222 2222222
Q ss_pred cCCcchhhhhh-hhhhcCCCC-----ceEEEeccccCCccccchhHhhhhccccccCC
Q 001607 602 EILPMVANCAT-ELSQNEQHF-----PGCSEKAFKIHSIETCDENARKCQRVSREENS 653 (1045)
Q Consensus 602 ~~np~~~~QA~-R~hriGq~~-----~v~~~r~~~~~t~ee~~~~~~k~k~~~~~~~~ 653 (1045)
.-++....|.. |+.|.|..+ +..+|.+++.+|.|+. ...|||+-.-+..-
T Consensus 571 ~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~--~s~~Rq~fl~~qGY 626 (732)
T TIGR00603 571 YGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMY--YSTKRQRFLVDQGY 626 (732)
T ss_pred CCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHH--HHHHHHHHHHHCCC
Confidence 12454444544 555555433 3678999999999987 57778777665543
No 23
>PRK13766 Hef nuclease; Provisional
Probab=99.77 E-value=8.6e-18 Score=212.75 Aligned_cols=367 Identities=11% Similarity=0.034 Sum_probs=189.6
Q ss_pred CcEEEEeCc-hhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 222 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
+++|||||. .++.||.+++.+++..+..++.++.|..... ........++|+|+|++.+..++..
T Consensus 59 ~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~------~r~~~~~~~~iiv~T~~~l~~~l~~-------- 124 (773)
T PRK13766 59 GKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPE------KRAELWEKAKVIVATPQVIENDLIA-------- 124 (773)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHH------HHHHHHhCCCEEEECHHHHHHHHHc--------
Confidence 589999998 7889999999999854445888888864321 1123345789999999999887532
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHh---ccCcEEEEeccCCCCChhhhhhcccccCCC
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL---YAKHRWCITGTPIQRKLDDLYGLLRFLKSS 377 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L---~a~~Rw~LTGTPiqN~l~DL~~LL~FL~p~ 377 (1045)
..+..-.|+.||+||||++.+..+..+-+-... +..+.++|||||..+ ...+..++.-|...
T Consensus 125 --------------~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~ 189 (773)
T PRK13766 125 --------------GRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIE 189 (773)
T ss_pred --------------CCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCce
Confidence 112334689999999999986654433222222 345699999999876 45555555544433
Q ss_pred CCCCh----HHHHHHHcCCC----cCCchhhHHHHHHHHHHhhhhcccccccccCCCCCceEEEEEecCCHHHHHHHHHH
Q 001607 378 PFSIS----RWWIEVIRDPY----ENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 449 (1045)
Q Consensus 378 ~~~~~----~~f~~~~~~p~----~~~~~~~~~~L~~~l~~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Q~~~Y~~i 449 (1045)
.+... ......+..+- .-.-+..+..++..+..++-++.+...... .+++....+..-.+...++.++..+
T Consensus 190 ~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~l 268 (773)
T PRK13766 190 HVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG-VIVSISPDVSKKELLGLQKKLQQEI 268 (773)
T ss_pred EEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC-CcccCCCCcCHHHHHHHHHHHHHHh
Confidence 21111 11122221110 001234566788888888887776543211 1223222222233333333333322
Q ss_pred HHHHHH--HHHHHH---HHHHHHHhhccCCCCCCCCCCcCcccchhhHHHHHHHHHHHHHHccCCCCCCC----------
Q 001607 450 HETCVG--YAREVI---QRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSS---------- 514 (1045)
Q Consensus 450 ~~~~~~--~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~il~~L~rLRqiC~HP~L~~~---------- 514 (1045)
...... .....+ .++..... .+.......+...+.+++..+.++.-...
T Consensus 269 ~~~~~~~~~~~~~~~~~~~l~~~~~----------------~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~ 332 (773)
T PRK13766 269 ANDDSEGYEAISILAEAMKLRHAVE----------------LLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRF 332 (773)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHH----------------HHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHH
Confidence 110000 000000 00000000 00000011122222233322211110000
Q ss_pred -----CcccccCCCCCHHHHHHHHHHHHHHhhhhhcchHHHhhhhHHHHHHHHHhHHHHHHH---HHH----------HH
Q 001607 515 -----GLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSL---YKE----------AM 576 (1045)
Q Consensus 515 -----~~~~~~~~~~t~~elL~~Ll~~~~~e~~~~~rkvlifsq~~a~L~ii~~~~~~a~~~---y~~----------~l 576 (1045)
..... .......+.|..++.....+ ....+++||+++..+.+.|.+.+...... +.+ ..
T Consensus 333 ~~~~~~~~~~-~~~~pK~~~L~~il~~~~~~--~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~ 409 (773)
T PRK13766 333 RKAVRKAKEL-DIEHPKLEKLREIVKEQLGK--NPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQ 409 (773)
T ss_pred HHHHHHHHhc-ccCChHHHHHHHHHHHHHhc--CCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCH
Confidence 00000 01112234455555544322 24479999999999999998877443211 111 01
Q ss_pred HHHHHHhhccCCCCC-----------------cCceeEeeCCcCCcchhhhhhhhhhcCCCCceEEEeccccCCccccch
Q 001607 577 AVVEEHSEDFRLDPL-----------------LNIHLHHNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDE 639 (1045)
Q Consensus 577 ~~~~~~~~~f~~d~~-----------------~~~~~~~nl~~~np~~~~QA~R~hriGq~~~v~~~r~~~~~t~ee~~~ 639 (1045)
..+.+..++|+.+.. ....+.|+. +|+|..-.| |++|+|+..++.+|.+++.+|.||...
T Consensus 410 ~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~-~~s~~r~iQ--R~GR~gR~~~~~v~~l~~~~t~ee~~y 486 (773)
T PRK13766 410 KEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEP-VPSEIRSIQ--RKGRTGRQEEGRVVVLIAKGTRDEAYY 486 (773)
T ss_pred HHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCC-CCCHHHHHH--HhcccCcCCCCEEEEEEeCCChHHHHH
Confidence 123334445544332 222455554 377765444 888889888899999999999999754
Q ss_pred h
Q 001607 640 N 640 (1045)
Q Consensus 640 ~ 640 (1045)
.
T Consensus 487 ~ 487 (773)
T PRK13766 487 W 487 (773)
T ss_pred H
Confidence 3
No 24
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.46 E-value=3.8e-12 Score=150.52 Aligned_cols=294 Identities=16% Similarity=0.090 Sum_probs=167.8
Q ss_pred cEEEEeCch-hHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccch
Q 001607 223 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 301 (1045)
Q Consensus 223 ~tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~ 301 (1045)
.+|||||.. ++.||.+.+.+++..+ -.+..|.|.... ... .+|+++||+++.+....
T Consensus 82 ~~Lvlv~~~~L~~Qw~~~~~~~~~~~-~~~g~~~~~~~~---------~~~---~~i~vat~qtl~~~~~l--------- 139 (442)
T COG1061 82 STLVLVPTKELLDQWAEALKKFLLLN-DEIGIYGGGEKE---------LEP---AKVTVATVQTLARRQLL--------- 139 (442)
T ss_pred CEEEEECcHHHHHHHHHHHHHhcCCc-cccceecCceec---------cCC---CcEEEEEhHHHhhhhhh---------
Confidence 499999975 6789999999988321 245666665331 111 57999999999885200
Q ss_pred hhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCc-EEEEeccCCCCChhhhhhcccccCCCCCC
Q 001607 302 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKH-RWCITGTPIQRKLDDLYGLLRFLKSSPFS 380 (1045)
Q Consensus 302 ~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~-Rw~LTGTPiqN~l~DL~~LL~FL~p~~~~ 380 (1045)
..+..-.|+.||+||+|++..+..+ ..+..+.+.+ +++|||||...+-..+.-+..+++
T Consensus 140 -------------~~~~~~~~~liI~DE~Hh~~a~~~~--~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g----- 199 (442)
T COG1061 140 -------------DEFLGNEFGLIIFDEVHHLPAPSYR--RILELLSAAYPRLGLTATPEREDGGRIGDLFDLIG----- 199 (442)
T ss_pred -------------hhhcccccCEEEEEccccCCcHHHH--HHHHhhhcccceeeeccCceeecCCchhHHHHhcC-----
Confidence 1133337999999999999765533 3344455556 999999998544333333333332
Q ss_pred ChHHHHHHHcCCCcCCchhhHHHHHHHHHHhhhhcccccccccCCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 001607 381 ISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREV 460 (1045)
Q Consensus 381 ~~~~f~~~~~~p~~~~~~~~~~~L~~~l~~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Q~~~Y~~i~~~~~~~~~~~ 460 (1045)
+........+..++--|.|.....+++.++..+...|...........+.
T Consensus 200 -----------------------------~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~- 249 (442)
T COG1061 200 -----------------------------PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA- 249 (442)
T ss_pred -----------------------------CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh-
Confidence 22222222222233348899999999999999999998754332111000
Q ss_pred HHHHHHHHhhccCCCCCCCCCCcCcccchhhHHHHHHHHHHHHHHccCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHh
Q 001607 461 IQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIE 540 (1045)
Q Consensus 461 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~il~~L~rLRqiC~HP~L~~~~~~~~~~~~~t~~elL~~Ll~~~~~e 540 (1045)
+ .. ....-..+.+..+ .. .....+..++....
T Consensus 250 ----------~--------------------~~--~~~~~~~~~~~~~-------------~~-~~~~~~~~~~~~~~-- 281 (442)
T COG1061 250 ----------R--------------------GT--LRAENEARRIAIA-------------SE-RKIAAVRGLLLKHA-- 281 (442)
T ss_pred ----------h--------------------hh--hhHHHHHHHHhhc-------------cH-HHHHHHHHHHHHhc--
Confidence 0 00 0000001111100 00 01112222222111
Q ss_pred hhhhcchHHHhhhhHHHHHHHHHhHHHH----HHHHHHHHHHHHHHhhccCCCCCcCcee------EeeCCc--------
Q 001607 541 GEEALRKLVMALNGLAGIALIEKNLSQA----VSLYKEAMAVVEEHSEDFRLDPLLNIHL------HHNLTE-------- 602 (1045)
Q Consensus 541 ~~~~~rkvlifsq~~a~L~ii~~~~~~a----~~~y~~~l~~~~~~~~~f~~d~~~~~~~------~~nl~~-------- 602 (1045)
...++++|.........|...+... ..........+++..+.|+...+.-+.. +++.-+
T Consensus 282 ---~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~ 358 (442)
T COG1061 282 ---RGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILR 358 (442)
T ss_pred ---CCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeC
Confidence 2368888888888888888777655 3334444456666677777744433311 333322
Q ss_pred --CCcchhhhhh-hhhh-cCCCCc--eEEEeccccCCccccch
Q 001607 603 --ILPMVANCAT-ELSQ-NEQHFP--GCSEKAFKIHSIETCDE 639 (1045)
Q Consensus 603 --~np~~~~QA~-R~hr-iGq~~~--v~~~r~~~~~t~ee~~~ 639 (1045)
=.+..-.|.. |..| ...+.. +..|=++...+.++.+.
T Consensus 359 ~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~ 401 (442)
T COG1061 359 PTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIA 401 (442)
T ss_pred CCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchh
Confidence 2355667888 9999 555555 66667777777777653
No 25
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.36 E-value=7.1e-12 Score=129.58 Aligned_cols=123 Identities=24% Similarity=0.269 Sum_probs=72.0
Q ss_pred cEEEEeCc-hhHHHHHHHHHHhcCCCCCeEEEEeCC---CCC-----ccccccccchhhhcCccEEEEehHHHHhhcccC
Q 001607 223 ATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGA---RNS-----SLSDTSIMDISELVGADIVLTTYDVLKEDLSHD 293 (1045)
Q Consensus 223 ~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v~vy~G~---~~~-----~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~ 293 (1045)
++|||||. +|+.||.+++..+.. .......... ... ................++++++|+.+.......
T Consensus 52 ~~l~~~p~~~l~~Q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~ 129 (184)
T PF04851_consen 52 KVLIVAPNISLLEQWYDEFDDFGS--EKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEE 129 (184)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHST--TSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH-
T ss_pred ceeEecCHHHHHHHHHHHHHHhhh--hhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccc
Confidence 79999998 788999999988873 2222211111 000 000001112233457889999999998865321
Q ss_pred CCCCccchhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCC
Q 001607 294 SDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPI 360 (1045)
Q Consensus 294 ~~~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPi 360 (1045)
.... ... .....+..-.+++||+||||+..+... ++.+....+.+++.|||||.
T Consensus 130 ~~~~-~~~----------~~~~~~~~~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 130 KKID-ESA----------RRSYKLLKNKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp -------------------GCHHGGGGSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred cccc-cch----------hhhhhhccccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 1100 000 000123445688999999999975543 55555588899999999995
No 26
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.30 E-value=1.8e-11 Score=126.95 Aligned_cols=114 Identities=21% Similarity=0.223 Sum_probs=75.3
Q ss_pred CcEEEEeC-chhHHHHHHHHHHhcCCCC-CeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCcc
Q 001607 222 GATLIVCP-APILAQWDAEITRHTRPGS-LKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 299 (1045)
Q Consensus 222 ~~tLIV~P-~SLl~qW~~Ei~k~~~~~~-l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~ 299 (1045)
+++|||+| .++..||..++.++..... ....++++..... .........++++++||+.+.......
T Consensus 55 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~t~~~l~~~~~~~------ 123 (201)
T smart00487 55 KRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKRE-----QLRKLESGKTDILVTTPGRLLDLLEND------ 123 (201)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHH-----HHHHHhcCCCCEEEeChHHHHHHHHcC------
Confidence 57999999 6778999999999884322 4455566543210 011111122399999999998866431
Q ss_pred chhhhhhcccCCCccccccccccceEEeccccccCC-hHHHH-HHHHHHh-ccCcEEEEeccCCCC
Q 001607 300 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES-NAAAA-TEMALRL-YAKHRWCITGTPIQR 362 (1045)
Q Consensus 300 ~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn-~~S~~-~~al~~L-~a~~Rw~LTGTPiqN 362 (1045)
.+....|+++|+||+|++.+ ..... ...+..+ ...+++++||||..+
T Consensus 124 ----------------~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 124 ----------------LLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEE 173 (201)
T ss_pred ----------------CcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchh
Confidence 13345688999999999985 33333 3333444 578899999999644
No 27
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.30 E-value=1.8e-11 Score=119.49 Aligned_cols=111 Identities=18% Similarity=0.118 Sum_probs=77.1
Q ss_pred CCcEEEEeCchhH-HHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCcc
Q 001607 221 TGATLIVCPAPIL-AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 299 (1045)
Q Consensus 221 ~~~tLIV~P~SLl-~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~ 299 (1045)
.+.++|+||...+ .||.+.+.++... .+.+.++++...... .........+|+++||+.+.......
T Consensus 30 ~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~i~i~t~~~~~~~~~~~------ 97 (144)
T cd00046 30 GGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQ-----QEKLLSGKTDIVVGTPGRLLDELERL------ 97 (144)
T ss_pred CCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhH-----HHHHhcCCCCEEEECcHHHHHHHHcC------
Confidence 3689999998866 5667777777732 577777777643211 01223467899999999988765321
Q ss_pred chhhhhhcccCCCccccccccccceEEeccccccCChHHHHH---HHHHHhccCcEEEEeccC
Q 001607 300 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAAT---EMALRLYAKHRWCITGTP 359 (1045)
Q Consensus 300 ~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~---~al~~L~a~~Rw~LTGTP 359 (1045)
.+....|++||+||+|.+.+...... ...........+++||||
T Consensus 98 ----------------~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 98 ----------------KLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred ----------------CcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 12345799999999999988765443 233345678899999999
No 28
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.17 E-value=2.8e-10 Score=137.20 Aligned_cols=100 Identities=19% Similarity=0.293 Sum_probs=70.2
Q ss_pred CcEEEEeCc-hhHHHHHHHHHHhcCCCCCeE-EEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCcc
Q 001607 222 GATLIVCPA-PILAQWDAEITRHTRPGSLKT-CIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 299 (1045)
Q Consensus 222 ~~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v-~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~ 299 (1045)
+++|||||. .|+.||.+++.+|...+...+ .++.|.... ...+|+|+|++.+.+...
T Consensus 159 ~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------------~~~~I~VaT~qsl~~~~~-------- 217 (501)
T PHA02558 159 GKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------------TDAPIVVSTWQSAVKQPK-------- 217 (501)
T ss_pred CeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-------------CCCCEEEeeHHHHhhchh--------
Confidence 379999997 688999999999874333333 445554221 347899999999865321
Q ss_pred chhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHh-ccCcEEEEeccCCC
Q 001607 300 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGTPIQ 361 (1045)
Q Consensus 300 ~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L-~a~~Rw~LTGTPiq 361 (1045)
..+ -.|+.||+||||++...+ ....+..+ ++.++++|||||..
T Consensus 218 ---------------~~~--~~~~~iIvDEaH~~~~~~--~~~il~~~~~~~~~lGLTATp~~ 261 (501)
T PHA02558 218 ---------------EWF--DQFGMVIVDECHLFTGKS--LTSIITKLDNCKFKFGLTGSLRD 261 (501)
T ss_pred ---------------hhc--cccCEEEEEchhcccchh--HHHHHHhhhccceEEEEeccCCC
Confidence 011 257899999999997543 34455566 58899999999954
No 29
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.17 E-value=6.2e-11 Score=133.36 Aligned_cols=128 Identities=20% Similarity=0.318 Sum_probs=87.7
Q ss_pred CcEEEEeCchh-HHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 222 GATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~P~SL-l~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
+.+||+|-+++ +.||..+|..|..-..-.+..|....+.+ ....++||||||+++..--... ...
T Consensus 346 K~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke~----------~~~~~gvvvsTYsMva~t~kRS----~ea 411 (776)
T KOG1123|consen 346 KSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKER----------FPSGAGVVVTTYSMVAYTGKRS----HEA 411 (776)
T ss_pred ccEEEEecCccCHHHHHHHHHhhcccCccceEEeecccccc----------CCCCCcEEEEeeehhhhccccc----HHH
Confidence 57899999886 79999999999854445667777665432 2245779999999987532110 001
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCChhhhhhcccccCCC
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSS 377 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~LL~FL~p~ 377 (1045)
. .+...|....|..+|+||.|.+ |.....+.+.-+++..++.||+|-+..+ |=..=|+||-.+
T Consensus 412 e----------k~m~~l~~~EWGllllDEVHvv--PA~MFRRVlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGP 474 (776)
T KOG1123|consen 412 E----------KIMDFLRGREWGLLLLDEVHVV--PAKMFRRVLSIVQAHCKLGLTATLVRED--DKITDLNFLIGP 474 (776)
T ss_pred H----------HHHHHHhcCeeeeEEeehhccc--hHHHHHHHHHHHHHHhhccceeEEeecc--ccccccceeecc
Confidence 1 1123477889999999999999 3434444555568899999999988752 333445676443
No 30
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.95 E-value=4.9e-09 Score=135.28 Aligned_cols=115 Identities=14% Similarity=0.038 Sum_probs=65.5
Q ss_pred CcEEEEeCc-hhHHHHHHHHHHhcCCCCCeE-EEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCcc
Q 001607 222 GATLIVCPA-PILAQWDAEITRHTRPGSLKT-CIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 299 (1045)
Q Consensus 222 ~~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v-~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~ 299 (1045)
+++|+|||. .|+.||.++|..+..++...+ -+|....- ..........|+|+||.++.+........
T Consensus 464 ~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~~~~i~~i~~L--------~~~~~~~~~~I~iaTiQtl~~~~~~~~~~--- 532 (1123)
T PRK11448 464 RRILFLVDRSALGEQAEDAFKDTKIEGDQTFASIYDIKGL--------EDKFPEDETKVHVATVQGMVKRILYSDDP--- 532 (1123)
T ss_pred CeEEEEecHHHHHHHHHHHHHhcccccccchhhhhchhhh--------hhhcccCCCCEEEEEHHHHHHhhhccccc---
Confidence 579999996 578999999998752221111 12211100 01111235789999999997754211000
Q ss_pred chhhhhhcccCCCccccccccccceEEeccccccCChH----------------HHHHHHHHH-hccCcEEEEeccCCCC
Q 001607 300 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA----------------AAATEMALR-LYAKHRWCITGTPIQR 362 (1045)
Q Consensus 300 ~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~----------------S~~~~al~~-L~a~~Rw~LTGTPiqN 362 (1045)
. ..+.--.|++||+||||+.-... ...++.+.. +. ..+++|||||..+
T Consensus 533 ----------~----~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~ 597 (1123)
T PRK11448 533 ----------M----DKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFD-AVKIGLTATPALH 597 (1123)
T ss_pred ----------c----ccCCCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcC-ccEEEEecCCccc
Confidence 0 00112468899999999953100 122333332 33 4789999999853
No 31
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=98.94 E-value=4.6e-08 Score=112.13 Aligned_cols=127 Identities=17% Similarity=0.130 Sum_probs=88.3
Q ss_pred CcEEEEeCc-hhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 222 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
|.+|+++|+ .|+.|=..-+.+.+.-|.-.+..+.|.-... .....+.+..|++.|-+++.+|+..
T Consensus 59 ~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~------~R~~~w~~~kVfvaTPQvveNDl~~-------- 124 (542)
T COG1111 59 GKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPE------EREELWAKKKVFVATPQVVENDLKA-------- 124 (542)
T ss_pred CeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChH------HHHHHHhhCCEEEeccHHHHhHHhc--------
Confidence 479999995 7899999999999976778889999974321 1334567788999999999999854
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCChH--HHHHHHHHHhcc-CcEEEEeccCCCCChhhhhhcccccCCC
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTPIQRKLDDLYGLLRFLKSS 377 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~--S~~~~al~~L~a-~~Rw~LTGTPiqN~l~DL~~LL~FL~p~ 377 (1045)
+.+.--.+..+|+||||+.-+.- ...++....-.. .+.++||+||=. +.+.+...+.=|+.+
T Consensus 125 --------------Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs-~~ekI~eV~~nLgIe 189 (542)
T COG1111 125 --------------GRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPGS-DLEKIQEVVENLGIE 189 (542)
T ss_pred --------------CccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCCC-CHHHHHHHHHhCCcc
Confidence 22444568899999999954333 223333333333 368999999954 344444455545444
No 32
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.75 E-value=1.4e-07 Score=99.96 Aligned_cols=112 Identities=21% Similarity=0.180 Sum_probs=75.2
Q ss_pred CcEEEEeCc-hhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhh-cCccEEEEehHHHHhhcccCCCCCcc
Q 001607 222 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSDRHEG 299 (1045)
Q Consensus 222 ~~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l-~~~dVVItTY~~l~~d~~~~~~~~~~ 299 (1045)
..+|||||. .++.||...+..+.....+++..++|...... ..... ...+|+|+|.+.+...+...
T Consensus 70 ~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~iiv~T~~~l~~~l~~~------ 137 (203)
T cd00268 70 PQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDK------QIRKLKRGPHIVVATPGRLLDLLERG------ 137 (203)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH------HHHHhcCCCCEEEEChHHHHHHHHcC------
Confidence 469999997 47789999999998656788888888643211 11222 47899999999887654321
Q ss_pred chhhhhhcccCCCccccccccccceEEeccccccCChH-HH-HHHHHHHhc-cCcEEEEeccCCC
Q 001607 300 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AA-ATEMALRLY-AKHRWCITGTPIQ 361 (1045)
Q Consensus 300 ~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~-S~-~~~al~~L~-a~~Rw~LTGTPiq 361 (1045)
.+.--.++++|+||+|.+.+.. .. .......+. ....+++|+||-.
T Consensus 138 ----------------~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~ 186 (203)
T cd00268 138 ----------------KLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPK 186 (203)
T ss_pred ----------------CCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCCH
Confidence 0111246789999999986443 22 222333444 4668999999873
No 33
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.70 E-value=9.4e-08 Score=118.84 Aligned_cols=110 Identities=16% Similarity=0.165 Sum_probs=64.4
Q ss_pred CcEEEEeCch-hHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 222 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
.++|||||.. |..||.++|.++.. .. + .+.... ........-...+|+|||+.++........
T Consensus 294 ~~vl~lvdR~~L~~Q~~~~f~~~~~--~~-~---~~~~s~----~~L~~~l~~~~~~iivtTiQk~~~~~~~~~------ 357 (667)
T TIGR00348 294 PKVFFVVDRRELDYQLMKEFQSLQK--DC-A---ERIESI----AELKRLLEKDDGGIIITTIQKFDKKLKEEE------ 357 (667)
T ss_pred CeEEEEECcHHHHHHHHHHHHhhCC--CC-C---cccCCH----HHHHHHHhCCCCCEEEEEhHHhhhhHhhhh------
Confidence 4799999975 77899999999862 10 0 111000 000000111246799999999986321100
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHH-HHhccCcEEEEeccCCCC
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMA-LRLYAKHRWCITGTPIQR 362 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al-~~L~a~~Rw~LTGTPiqN 362 (1045)
..+ ........||+||||+.-... ..+.+ ..++...++++||||+..
T Consensus 358 -------~~~------~~~~~~~lvIvDEaHrs~~~~--~~~~l~~~~p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 358 -------EKF------PVDRKEVVVIFDEAHRSQYGE--LAKNLKKALKNASFFGFTGTPIFK 405 (667)
T ss_pred -------hcc------CCCCCCEEEEEEcCccccchH--HHHHHHhhCCCCcEEEEeCCCccc
Confidence 000 001112379999999875432 33344 356778999999999864
No 34
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.65 E-value=1.9e-07 Score=115.80 Aligned_cols=112 Identities=14% Similarity=0.232 Sum_probs=73.8
Q ss_pred cEEEEeCchh-HHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccch
Q 001607 223 ATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 301 (1045)
Q Consensus 223 ~tLIV~P~SL-l~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~ 301 (1045)
.+||++|... ..||.+++.+++.+-.+++.+++|........ ........+..+|||.|+..+.....
T Consensus 286 qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~-~~~~~i~~g~~~IiVgT~~ll~~~~~---------- 354 (630)
T TIGR00643 286 QVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRK-ELLETIASGQIHLVVGTHALIQEKVE---------- 354 (630)
T ss_pred cEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHH-HHHHHHhCCCCCEEEecHHHHhcccc----------
Confidence 6899999865 58999999999854368999999874421100 00111123467999999988764321
Q ss_pred hhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhc---cCcEEEEeccCCCCCh
Q 001607 302 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY---AKHRWCITGTPIQRKL 364 (1045)
Q Consensus 302 ~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~---a~~Rw~LTGTPiqN~l 364 (1045)
+. ....||+||+|++.-. +......... ..+.+++|+||++..+
T Consensus 355 ---------------~~--~l~lvVIDEaH~fg~~--qr~~l~~~~~~~~~~~~l~~SATp~prtl 401 (630)
T TIGR00643 355 ---------------FK--RLALVIIDEQHRFGVE--QRKKLREKGQGGFTPHVLVMSATPIPRTL 401 (630)
T ss_pred ---------------cc--ccceEEEechhhccHH--HHHHHHHhcccCCCCCEEEEeCCCCcHHH
Confidence 22 3578999999997422 2222222333 5789999999988654
No 35
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.56 E-value=3.7e-07 Score=93.27 Aligned_cols=117 Identities=18% Similarity=0.181 Sum_probs=77.8
Q ss_pred CcEEEEeCc-hhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhh-hcCccEEEEehHHHHhhcccCCCCCcc
Q 001607 222 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE-LVGADIVLTTYDVLKEDLSHDSDRHEG 299 (1045)
Q Consensus 222 ~~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~-l~~~dVVItTY~~l~~d~~~~~~~~~~ 299 (1045)
+.+||++|. +++.|=.+++.+++....+++..++|..... ...... ....+|+|+|++.+........
T Consensus 45 ~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ilv~T~~~l~~~~~~~~----- 114 (169)
T PF00270_consen 45 ARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSIS-----EDQREVLSNQADILVTTPEQLLDLISNGK----- 114 (169)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHH-----HHHHHHHHTTSSEEEEEHHHHHHHHHTTS-----
T ss_pred ceEEEEeeccccccccccccccccccccccccccccccccc-----ccccccccccccccccCcchhhccccccc-----
Confidence 379999996 5788999999999865568888887764311 011122 2469999999999988664200
Q ss_pred chhhhhhcccCCCccccccccccceEEeccccccCCh--HHHHHHHHHHh---ccCcEEEEeccCCCCChhh
Q 001607 300 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRL---YAKHRWCITGTPIQRKLDD 366 (1045)
Q Consensus 300 ~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~--~S~~~~al~~L---~a~~Rw~LTGTPiqN~l~D 366 (1045)
..+ ....+||+||+|.+... .......+..+ .....+++|+||- .++++
T Consensus 115 ---------------~~~--~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 115 ---------------INI--SRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVEK 168 (169)
T ss_dssp ---------------STG--TTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHHH
T ss_pred ---------------ccc--ccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHhh
Confidence 002 23688999999998652 22233333333 2366899999998 55554
No 36
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.50 E-value=2.1e-06 Score=94.58 Aligned_cols=145 Identities=18% Similarity=0.249 Sum_probs=90.6
Q ss_pred CccEEEEehHHHHhhcccCCCCCccchhhhhhcccCCCcccccccc-cc-----c-eEEeccccccCChHH------HHH
Q 001607 275 GADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRI-FW-----W-RICLDEAQMVESNAA------AAT 341 (1045)
Q Consensus 275 ~~dVVItTY~~l~~d~~~~~~~~~~~~~~~r~~k~~~~~~s~L~~i-~w-----~-rVIlDEAH~iKn~~S------~~~ 341 (1045)
..+|+.+||++|......... .. +-|.++ .| + +||+||+|..||..+ ++.
T Consensus 136 ~~GvlF~TYs~L~~~~~~~~~------~~-----------sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g 198 (303)
T PF13872_consen 136 KEGVLFSTYSTLISESQSGGK------YR-----------SRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTG 198 (303)
T ss_pred CCCccchhHHHHHhHHhccCC------cc-----------chHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHH
Confidence 467999999999987532100 00 112211 22 2 688999999999754 566
Q ss_pred HHHHHh----ccCcEEEEeccCCCCChhhhhhccc--ccCC-CCCCChHHHHHHHcCCCcCCchhhHHHHHHHHH--Hhh
Q 001607 342 EMALRL----YAKHRWCITGTPIQRKLDDLYGLLR--FLKS-SPFSISRWWIEVIRDPYENGDVGAMEFTHKFFK--EIM 412 (1045)
Q Consensus 342 ~al~~L----~a~~Rw~LTGTPiqN~l~DL~~LL~--FL~p-~~~~~~~~f~~~~~~p~~~~~~~~~~~L~~~l~--~~m 412 (1045)
.++..| +.-+.+-.|+|.... +..|--+-+ +-++ .+|.+...|.+.+. +++..+++.+..-|+ ..+
T Consensus 199 ~avl~LQ~~LP~ARvvY~SATgase-p~NmaYm~RLGLWG~gtpf~~~~~f~~a~~----~gGv~amE~vA~dlKa~G~y 273 (303)
T PF13872_consen 199 IAVLELQNRLPNARVVYASATGASE-PRNMAYMSRLGLWGPGTPFPDFDDFLEAME----KGGVGAMEMVAMDLKARGMY 273 (303)
T ss_pred HHHHHHHHhCCCCcEEEecccccCC-CceeeeeeeccccCCCCCCCCHHHHHHHHH----hcCchHHHHHHHHHHhcchh
Confidence 666655 334578899998753 333321111 1122 24667777766654 455566666655444 356
Q ss_pred hhcccccccccCCCCCceEEEEEecCCHHHHHHHHH
Q 001607 413 CRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQS 448 (1045)
Q Consensus 413 lRRtK~dV~~el~LPpk~e~vv~v~lS~~Q~~~Y~~ 448 (1045)
++|. +++-.-...++.+++|+.+.++|+.
T Consensus 274 iaR~-------LSf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 274 IARQ-------LSFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred eeee-------cccCCceEEEEEecCCHHHHHHhcC
Confidence 6664 4466667889999999999999984
No 37
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.43 E-value=1.1e-06 Score=109.80 Aligned_cols=111 Identities=19% Similarity=0.263 Sum_probs=72.6
Q ss_pred cEEEEeCchh-HHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccch
Q 001607 223 ATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 301 (1045)
Q Consensus 223 ~tLIV~P~SL-l~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~ 301 (1045)
.+||++|... ..|+.+.+.+++.+-++++.+++|........ ........+..+|||+|...+.....
T Consensus 312 q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~-~~~~~l~~g~~~IvVgT~~ll~~~v~---------- 380 (681)
T PRK10917 312 QAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERR-EILEAIASGEADIVIGTHALIQDDVE---------- 380 (681)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHH-HHHHHHhCCCCCEEEchHHHhcccch----------
Confidence 5899999865 57999999999854458999999974421100 00111122468999999988754321
Q ss_pred hhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHh-ccCcEEEEeccCCCCCh
Q 001607 302 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGTPIQRKL 364 (1045)
Q Consensus 302 ~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L-~a~~Rw~LTGTPiqN~l 364 (1045)
+. +...||+||+|++.- .....+... ...+.+++|+||++..+
T Consensus 381 ---------------~~--~l~lvVIDE~Hrfg~---~qr~~l~~~~~~~~iL~~SATp~prtl 424 (681)
T PRK10917 381 ---------------FH--NLGLVIIDEQHRFGV---EQRLALREKGENPHVLVMTATPIPRTL 424 (681)
T ss_pred ---------------hc--ccceEEEechhhhhH---HHHHHHHhcCCCCCEEEEeCCCCHHHH
Confidence 22 346799999999842 222233332 24678999999987543
No 38
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=98.42 E-value=2.3e-05 Score=95.25 Aligned_cols=124 Identities=16% Similarity=0.167 Sum_probs=80.8
Q ss_pred CCcEEEEeCch-hHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCcc
Q 001607 221 TGATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 299 (1045)
Q Consensus 221 ~~~tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~ 299 (1045)
.+.+++.+|.. |+.|=..++.....+ -.+....|....+.. ........+|++.|-.++.+++....
T Consensus 106 ~~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~-----r~~i~~s~~vff~TpQil~ndL~~~~----- 173 (746)
T KOG0354|consen 106 KGKVVFLAPTRPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSN-----RGEIVASKRVFFRTPQILENDLKSGL----- 173 (746)
T ss_pred cceEEEeeCCchHHHHHHHHHhhccCc--ccceeeccCccCCCc-----hhhhhcccceEEeChHhhhhhccccc-----
Confidence 37899999985 666666888888753 455555555332211 23455678999999999999986421
Q ss_pred chhhhhhcccCCCccccccc-cccceEEecccccc-CChH-HHHHHHHHHhc--cCcEEEEeccCCCCChhhhhhccccc
Q 001607 300 DRRFMRFQKRYPVIPTLLTR-IFWWRICLDEAQMV-ESNA-AAATEMALRLY--AKHRWCITGTPIQRKLDDLYGLLRFL 374 (1045)
Q Consensus 300 ~~~~~r~~k~~~~~~s~L~~-i~w~rVIlDEAH~i-Kn~~-S~~~~al~~L~--a~~Rw~LTGTPiqN~l~DL~~LL~FL 374 (1045)
... -.|-.+|+||||+- ||.. +...+....++ ....++|||||= ++.+...+.+.=|
T Consensus 174 -----------------~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L 235 (746)
T KOG0354|consen 174 -----------------HDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNL 235 (746)
T ss_pred -----------------ccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhh
Confidence 111 34788999999995 4432 44444454443 336789999998 5555555544333
No 39
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.30 E-value=3.3e-06 Score=109.88 Aligned_cols=112 Identities=18% Similarity=0.180 Sum_probs=72.1
Q ss_pred CcEEEEeCchhH-HHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 222 GATLIVCPAPIL-AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~P~SLl-~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
..+||+||...+ .|..+.+.+.+..-.+++.++.|....... .........+..||||+|++.+..++.
T Consensus 650 ~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~-~~il~~l~~g~~dIVVgTp~lL~~~v~--------- 719 (1147)
T PRK10689 650 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQ-TQILAEAAEGKIDILIGTHKLLQSDVK--------- 719 (1147)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHH-HHHHHHHHhCCCCEEEECHHHHhCCCC---------
Confidence 369999998755 799999998764334677777775332100 000011112467999999987754321
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhc-cCcEEEEeccCCCCCh
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKL 364 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~-a~~Rw~LTGTPiqN~l 364 (1045)
+ -....||+||+|++... ....++.+. ....+++||||+++.+
T Consensus 720 ----------------~--~~L~lLVIDEahrfG~~---~~e~lk~l~~~~qvLl~SATpiprtl 763 (1147)
T PRK10689 720 ----------------W--KDLGLLIVDEEHRFGVR---HKERIKAMRADVDILTLTATPIPRTL 763 (1147)
T ss_pred ----------------H--hhCCEEEEechhhcchh---HHHHHHhcCCCCcEEEEcCCCCHHHH
Confidence 1 24678999999999432 233445554 4578999999998754
No 40
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.28 E-value=3.8e-06 Score=100.86 Aligned_cols=129 Identities=12% Similarity=0.141 Sum_probs=78.5
Q ss_pred CcEEEEeCc-hhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 222 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
+.+|||+|. +|+.||...+... .+++..+.|....... ...........++|+++|.+.+......
T Consensus 52 ~~~lVi~P~~~L~~dq~~~l~~~----gi~~~~l~~~~~~~~~-~~i~~~~~~~~~~il~~TPe~l~~~~~~-------- 118 (470)
T TIGR00614 52 GITLVISPLISLMEDQVLQLKAS----GIPATFLNSSQSKEQQ-KNVLTDLKDGKIKLLYVTPEKCSASNRL-------- 118 (470)
T ss_pred CcEEEEecHHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHH-HHHHHHHhcCCCCEEEECHHHHcCchhH--------
Confidence 468999997 5778888888754 3666666665332100 0000111235689999999988653210
Q ss_pred hhhhhhcccCCCccccc-cccccceEEeccccccCChH-------HHHHHHHHHhccCcEEEEeccCCCCChhhhhhccc
Q 001607 301 RRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNA-------AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLR 372 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L-~~i~w~rVIlDEAH~iKn~~-------S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~LL~ 372 (1045)
. ..+ ......+||+||||.+-... .........++....+++||||-.....|+...+.
T Consensus 119 ---~----------~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~ 185 (470)
T TIGR00614 119 ---L----------QTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLN 185 (470)
T ss_pred ---H----------HHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcC
Confidence 0 012 23457889999999985432 11112222345567899999998877777777665
Q ss_pred ccCC
Q 001607 373 FLKS 376 (1045)
Q Consensus 373 FL~p 376 (1045)
+-.|
T Consensus 186 l~~~ 189 (470)
T TIGR00614 186 LKNP 189 (470)
T ss_pred CCCC
Confidence 5444
No 41
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.27 E-value=4.2e-06 Score=106.72 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=71.8
Q ss_pred CcEEEEeCchh-HHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 222 GATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~P~SL-l~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
..+||+||... ..|..+.+.+++.+-.+++.+++|....... ......-..+..||||+|...+..++.
T Consensus 501 ~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~-~~~~~~l~~g~~dIVIGTp~ll~~~v~--------- 570 (926)
T TIGR00580 501 KQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQ-NEILKELASGKIDILIGTHKLLQKDVK--------- 570 (926)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHH-HHHHHHHHcCCceEEEchHHHhhCCCC---------
Confidence 35899999865 5799999999885435677777775321100 000111112468999999977654321
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhc-cCcEEEEeccCCCCChh
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLD 365 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~-a~~Rw~LTGTPiqN~l~ 365 (1045)
+. +...||+||+|++.- .....+..+. ....+++|+||++..+.
T Consensus 571 ----------------f~--~L~llVIDEahrfgv---~~~~~L~~~~~~~~vL~~SATpiprtl~ 615 (926)
T TIGR00580 571 ----------------FK--DLGLLIIDEEQRFGV---KQKEKLKELRTSVDVLTLSATPIPRTLH 615 (926)
T ss_pred ----------------cc--cCCEEEeecccccch---hHHHHHHhcCCCCCEEEEecCCCHHHHH
Confidence 22 246899999999842 2233445554 45789999999886543
No 42
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.25 E-value=9.2e-06 Score=96.61 Aligned_cols=118 Identities=16% Similarity=0.070 Sum_probs=73.8
Q ss_pred CcEEEEeCch-hHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 222 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
..+||++|.. |..|+.+.+..+.....+++..+.|...... .........+|+|+|.+.|...+..
T Consensus 74 ~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~-----~~~~l~~~~~IlV~Tp~rl~~~~~~-------- 140 (434)
T PRK11192 74 PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMN-----HAEVFSENQDIVVATPGRLLQYIKE-------- 140 (434)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHH-----HHHHhcCCCCEEEEChHHHHHHHHc--------
Confidence 4689999975 6789998888877545688888888643210 0111224678999999988765432
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCChH--HHHHHHHHHhc-cCcEEEEeccCCCCChhh
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTPIQRKLDD 366 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~--S~~~~al~~L~-a~~Rw~LTGTPiqN~l~D 366 (1045)
..+..-....||+||||++-... ......+..+. ....+++|+|+-...+.+
T Consensus 141 --------------~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~ 195 (434)
T PRK11192 141 --------------ENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQD 195 (434)
T ss_pred --------------CCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHH
Confidence 01222346789999999875432 22222223333 245689999975433333
No 43
>PRK02362 ski2-like helicase; Provisional
Probab=98.24 E-value=1.2e-05 Score=101.94 Aligned_cols=115 Identities=19% Similarity=0.206 Sum_probs=74.4
Q ss_pred CcEEEEeCc-hhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 222 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
+.+|+|+|. +|+.|+.+++.++.. ..+++.++.|.... ....+..+||+|+|++.+..-.....
T Consensus 68 ~kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~--------~~~~l~~~~IiV~Tpek~~~llr~~~------ 132 (737)
T PRK02362 68 GKALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDS--------RDEWLGDNDIIVATSEKVDSLLRNGA------ 132 (737)
T ss_pred CcEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCc--------cccccCCCCEEEECHHHHHHHHhcCh------
Confidence 469999996 688999999998752 36889999887432 12334678999999998755432100
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCChH-HHHHHH-HHHh----ccCcEEEEeccCCCCChhhhhh
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEM-ALRL----YAKHRWCITGTPIQRKLDDLYG 369 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~-S~~~~a-l~~L----~a~~Rw~LTGTPiqN~l~DL~~ 369 (1045)
..+ -...+||+||+|++.+.. ...... +..+ .....+++|+|+- +..|+..
T Consensus 133 --------------~~l--~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~--n~~~la~ 189 (737)
T PRK02362 133 --------------PWL--DDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIG--NADELAD 189 (737)
T ss_pred --------------hhh--hhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCC--CHHHHHH
Confidence 001 135889999999997532 222222 2333 2346789999963 3455543
No 44
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.23 E-value=4.1e-06 Score=101.41 Aligned_cols=106 Identities=17% Similarity=0.165 Sum_probs=67.0
Q ss_pred CcEEEEeC-chhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 222 GATLIVCP-APILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~P-~SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
+.+|.++- .+|+.|=..++.+|. |.-.++..-... ....++.|.|.||.++......-..
T Consensus 216 KRVLFLaDR~~Lv~QA~~af~~~~--P~~~~~n~i~~~------------~~~~s~~i~lsTyqt~~~~~~~~~~----- 276 (875)
T COG4096 216 KRVLFLADRNALVDQAYGAFEDFL--PFGTKMNKIEDK------------KGDTSSEIYLSTYQTMTGRIEQKED----- 276 (875)
T ss_pred heeeEEechHHHHHHHHHHHHHhC--CCccceeeeecc------------cCCcceeEEEeehHHHHhhhhcccc-----
Confidence 57888886 578899999999999 433333222111 1112678999999999887643110
Q ss_pred hhhhhhcccCCCccccccccccceEEecccccc-CChHHHHHHHHHHhccCcEEEEeccCCCC
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV-ESNAAAATEMALRLYAKHRWCITGTPIQR 362 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~i-Kn~~S~~~~al~~L~a~~Rw~LTGTPiqN 362 (1045)
.+ .++..-+||.||+||||+- -+..+ .+...-.-.+.+||+||-..
T Consensus 277 --------~~----~~f~~g~FDlIvIDEaHRgi~~~~~----~I~dYFdA~~~gLTATP~~~ 323 (875)
T COG4096 277 --------EY----RRFGPGFFDLIVIDEAHRGIYSEWS----SILDYFDAATQGLTATPKET 323 (875)
T ss_pred --------cc----ccCCCCceeEEEechhhhhHHhhhH----HHHHHHHHHHHhhccCcccc
Confidence 01 1244557999999999983 22222 33332233456679999773
No 45
>PRK01172 ski2-like helicase; Provisional
Probab=98.21 E-value=1.5e-05 Score=100.19 Aligned_cols=114 Identities=14% Similarity=0.113 Sum_probs=71.3
Q ss_pred CcEEEEeCc-hhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 222 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
+.+++|+|. +|..|+.+++.++.. -..++..+.|.... ....+..+||+|+|++.+..-....
T Consensus 66 ~k~v~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~--------~~~~~~~~dIiv~Tpek~~~l~~~~------- 129 (674)
T PRK01172 66 LKSIYIVPLRSLAMEKYEELSRLRS-LGMRVKISIGDYDD--------PPDFIKRYDVVILTSEKADSLIHHD------- 129 (674)
T ss_pred CcEEEEechHHHHHHHHHHHHHHhh-cCCeEEEEeCCCCC--------ChhhhccCCEEEECHHHHHHHHhCC-------
Confidence 468899996 677899999998652 35778777776432 2233467899999999875543210
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCChH-HHHHHHH-H---Hhc-cCcEEEEeccCCCCChhhhh
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMA-L---RLY-AKHRWCITGTPIQRKLDDLY 368 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~-S~~~~al-~---~L~-a~~Rw~LTGTPiqN~l~DL~ 368 (1045)
+..--...+||+||+|++.... ......+ . .+. ....+++|+|+- +..++-
T Consensus 130 ---------------~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~--n~~~la 186 (674)
T PRK01172 130 ---------------PYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVS--NANELA 186 (674)
T ss_pred ---------------hhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccC--CHHHHH
Confidence 0111246789999999996432 2222222 2 232 345789999963 345543
No 46
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.17 E-value=2.2e-05 Score=94.02 Aligned_cols=111 Identities=15% Similarity=0.113 Sum_probs=70.4
Q ss_pred cEEEEeCch-hHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccch
Q 001607 223 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 301 (1045)
Q Consensus 223 ~tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~ 301 (1045)
.+|||||.- |..||.+++.++.....+++....|...... ........+||+|+|.+.|.......
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~-----~~~~l~~~~~IiV~TP~rL~~~~~~~-------- 143 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINP-----QMMKLRGGVDVLVATPGRLLDLEHQN-------- 143 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHH-----HHHHHcCCCcEEEEChHHHHHHHHcC--------
Confidence 589999974 6789999999987544577776666532110 01112346899999999986644210
Q ss_pred hhhhhcccCCCccccccccccceEEeccccccCChH--HHHHHHHHHhcc-CcEEEEeccCC
Q 001607 302 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTPI 360 (1045)
Q Consensus 302 ~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~--S~~~~al~~L~a-~~Rw~LTGTPi 360 (1045)
.+.--..++||+||||++-... ......+..+.. ...+++|+|+-
T Consensus 144 --------------~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~ 191 (456)
T PRK10590 144 --------------AVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFS 191 (456)
T ss_pred --------------CcccccceEEEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCc
Confidence 1112246789999999975432 222233444543 34789999963
No 47
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.15 E-value=1.1e-05 Score=101.00 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=81.9
Q ss_pred CcEEEEeCc-hhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 222 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
++.+-|||. +|..+=.+|+.+|- .-.++|.++.|.... ....+..+||+||||+.+-.-..+.
T Consensus 77 ~k~vYivPlkALa~Ek~~~~~~~~-~~GirV~~~TgD~~~--------~~~~l~~~~ViVtT~EK~Dsl~R~~------- 140 (766)
T COG1204 77 GKVVYIVPLKALAEEKYEEFSRLE-ELGIRVGISTGDYDL--------DDERLARYDVIVTTPEKLDSLTRKR------- 140 (766)
T ss_pred CcEEEEeChHHHHHHHHHHhhhHH-hcCCEEEEecCCccc--------chhhhccCCEEEEchHHhhHhhhcC-------
Confidence 589999995 77788888888443 236999999998543 4577899999999999986544321
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCCh-H-----HHHHHHHHHhccCcEEEEeccCCCCChhhhhhccccc
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-A-----AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 374 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~-~-----S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~LL~FL 374 (1045)
+..-...+.||+||+|++... . +-.+++...-...+-++||+| ++| .+| +-.||
T Consensus 141 ---------------~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSAT-lpN-~~e---vA~wL 200 (766)
T COG1204 141 ---------------PSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSAT-LPN-AEE---VADWL 200 (766)
T ss_pred ---------------cchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeee-cCC-HHH---HHHHh
Confidence 112335678999999999877 3 233333222222466889999 222 333 34566
Q ss_pred CCCCC
Q 001607 375 KSSPF 379 (1045)
Q Consensus 375 ~p~~~ 379 (1045)
+..++
T Consensus 201 ~a~~~ 205 (766)
T COG1204 201 NAKLV 205 (766)
T ss_pred CCccc
Confidence 65544
No 48
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.12 E-value=2.3e-05 Score=94.01 Aligned_cols=111 Identities=22% Similarity=0.173 Sum_probs=71.3
Q ss_pred cEEEEeCc-hhHHHHHHHHHHhcCC-CCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 223 ATLIVCPA-PILAQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 223 ~tLIV~P~-SLl~qW~~Ei~k~~~~-~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
.+||+||. .|..||.++++++... +.+++..+.|....... ........+|+|+|.+.+...+..
T Consensus 74 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~-----~~~l~~~~~IvV~Tp~rl~~~l~~-------- 140 (460)
T PRK11776 74 QALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQ-----IDSLEHGAHIIVGTPGRILDHLRK-------- 140 (460)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHH-----HHHhcCCCCEEEEChHHHHHHHHc--------
Confidence 48999997 4678999999987632 36888888776432100 011124579999999998775532
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCChH--HHHHHHHHHhcc-CcEEEEeccCC
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTPI 360 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~--S~~~~al~~L~a-~~Rw~LTGTPi 360 (1045)
..+.--.+..||+||||.+-... ......+..++. ...+++|+|+.
T Consensus 141 --------------~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~ 189 (460)
T PRK11776 141 --------------GTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYP 189 (460)
T ss_pred --------------CCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCc
Confidence 01222356789999999875432 233334444443 45789999963
No 49
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.11 E-value=1.4e-05 Score=98.84 Aligned_cols=127 Identities=17% Similarity=0.200 Sum_probs=80.0
Q ss_pred CcEEEEeCc-hhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 222 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
+.+|||+|. +|+.|+...+... .+++..+++....... ...........++++++|.+.+......
T Consensus 54 g~~lVisPl~sL~~dq~~~l~~~----gi~~~~~~s~~~~~~~-~~~~~~l~~~~~~il~~tpe~l~~~~~~-------- 120 (591)
T TIGR01389 54 GLTVVISPLISLMKDQVDQLRAA----GVAAAYLNSTLSAKEQ-QDIEKALVNGELKLLYVAPERLEQDYFL-------- 120 (591)
T ss_pred CcEEEEcCCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHH-HHHHHHHhCCCCCEEEEChhHhcChHHH--------
Confidence 468999996 6778999888774 3667777765332100 0001112235689999999987643210
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCChH-------HHHHHHHHHhccCcEEEEeccCCCCChhhhhhcccc
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-------AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRF 373 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~-------S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~LL~F 373 (1045)
..+......+||+||||.+.... .+.......+.....+++|+|+......|+...+.+
T Consensus 121 --------------~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~ 186 (591)
T TIGR01389 121 --------------NMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRL 186 (591)
T ss_pred --------------HHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 12444578899999999985421 122223334445568999999988877777776654
Q ss_pred cC
Q 001607 374 LK 375 (1045)
Q Consensus 374 L~ 375 (1045)
-.
T Consensus 187 ~~ 188 (591)
T TIGR01389 187 AD 188 (591)
T ss_pred CC
Confidence 43
No 50
>PTZ00424 helicase 45; Provisional
Probab=98.09 E-value=2.9e-05 Score=91.24 Aligned_cols=111 Identities=16% Similarity=0.076 Sum_probs=69.0
Q ss_pred CcEEEEeCch-hHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhh-hcCccEEEEehHHHHhhcccCCCCCcc
Q 001607 222 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE-LVGADIVLTTYDVLKEDLSHDSDRHEG 299 (1045)
Q Consensus 222 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~-l~~~dVVItTY~~l~~d~~~~~~~~~~ 299 (1045)
..+|||+|.. |..|+.+.+..+.....+.+....|..... ..... ....+|+|+|.+.+...+..
T Consensus 97 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~Ivv~Tp~~l~~~l~~------- 163 (401)
T PTZ00424 97 CQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVR------DDINKLKAGVHMVVGTPGRVYDMIDK------- 163 (401)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHH------HHHHHHcCCCCEEEECcHHHHHHHHh-------
Confidence 4689999974 668998888887744445555555543211 01111 23468999999988664421
Q ss_pred chhhhhhcccCCCccccccccccceEEeccccccCCh--HHHHHHHHHHhcc-CcEEEEeccCC
Q 001607 300 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLYA-KHRWCITGTPI 360 (1045)
Q Consensus 300 ~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~--~S~~~~al~~L~a-~~Rw~LTGTPi 360 (1045)
..+.--.+++||+||||.+... .......+..+.. ...+++|+|+.
T Consensus 164 ---------------~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 212 (401)
T PTZ00424 164 ---------------RHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMP 212 (401)
T ss_pred ---------------CCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCC
Confidence 0112234688999999997542 2344555555543 45788999963
No 51
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=98.08 E-value=2.3e-05 Score=96.99 Aligned_cols=128 Identities=14% Similarity=0.104 Sum_probs=76.8
Q ss_pred CcEEEEeCc-hhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 222 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
+.+|||+|. +|+.||.+.+... .+.+..+++....... ............+++++|.+.+..+...
T Consensus 66 g~tlVisPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~-~~~~~~~~~g~~~il~~tPe~l~~~~~~-------- 132 (607)
T PRK11057 66 GLTLVVSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQ-LEVMAGCRTGQIKLLYIAPERLMMDNFL-------- 132 (607)
T ss_pred CCEEEEecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHH-HHHHHHHhCCCCcEEEEChHHhcChHHH--------
Confidence 468999997 6778888888764 3566666554321100 0000111224578999998887643110
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCChH---HHHHHHHH----HhccCcEEEEeccCCCCChhhhhhcccc
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA---AAATEMAL----RLYAKHRWCITGTPIQRKLDDLYGLLRF 373 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~---S~~~~al~----~L~a~~Rw~LTGTPiqN~l~DL~~LL~F 373 (1045)
..+......+||+||||.+-... ...++.+. .+.....+++||||-.....|+...+.+
T Consensus 133 --------------~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l 198 (607)
T PRK11057 133 --------------EHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGL 198 (607)
T ss_pred --------------HHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCC
Confidence 12334467899999999986422 11122222 3345568999999988777777776654
Q ss_pred cCC
Q 001607 374 LKS 376 (1045)
Q Consensus 374 L~p 376 (1045)
-+|
T Consensus 199 ~~~ 201 (607)
T PRK11057 199 NDP 201 (607)
T ss_pred CCe
Confidence 443
No 52
>PRK00254 ski2-like helicase; Provisional
Probab=98.07 E-value=4.6e-05 Score=96.33 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=75.1
Q ss_pred CcEEEEeCc-hhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 222 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
+.+|+|+|. +++.|+.+++.+|.. -.+++..++|.... .......+||+|+|++.+..-+.+..
T Consensus 69 ~~~l~l~P~~aLa~q~~~~~~~~~~-~g~~v~~~~Gd~~~--------~~~~~~~~~IiV~Tpe~~~~ll~~~~------ 133 (720)
T PRK00254 69 GKAVYLVPLKALAEEKYREFKDWEK-LGLRVAMTTGDYDS--------TDEWLGKYDIIIATAEKFDSLLRHGS------ 133 (720)
T ss_pred CeEEEEeChHHHHHHHHHHHHHHhh-cCCEEEEEeCCCCC--------chhhhccCCEEEEcHHHHHHHHhCCc------
Confidence 468999996 577899999988642 35888888887432 12335678999999998765432100
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCCh--HHHHHHHHHHhc-cCcEEEEeccCCCCChhhhhh
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLY-AKHRWCITGTPIQRKLDDLYG 369 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~--~S~~~~al~~L~-a~~Rw~LTGTPiqN~l~DL~~ 369 (1045)
..+. ....||+||+|.+... .......+..+. ....+++|+|+- | ..|+-.
T Consensus 134 --------------~~l~--~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~-n-~~~la~ 187 (720)
T PRK00254 134 --------------SWIK--DVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVG-N-AEELAE 187 (720)
T ss_pred --------------hhhh--cCCEEEEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCC-C-HHHHHH
Confidence 0122 3578999999999643 233333444443 456788999973 2 555544
No 53
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=98.06 E-value=4.9e-05 Score=92.42 Aligned_cols=111 Identities=14% Similarity=0.133 Sum_probs=70.3
Q ss_pred CcEEEEeCch-hHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccch-hhhcCccEEEEehHHHHhhcccCCCCCcc
Q 001607 222 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDI-SELVGADIVLTTYDVLKEDLSHDSDRHEG 299 (1045)
Q Consensus 222 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~-~~l~~~dVVItTY~~l~~d~~~~~~~~~~ 299 (1045)
..+|||+|.. |..|+.+++..+...-.+++..+.|..... ... .....++|+|+|.+.+...+....
T Consensus 197 ~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~------~q~~~l~~~~~IiV~TPgrL~~~l~~~~----- 265 (518)
T PLN00206 197 PLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMP------QQLYRIQQGVELIVGTPGRLIDLLSKHD----- 265 (518)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchH------HHHHHhcCCCCEEEECHHHHHHHHHcCC-----
Confidence 3689999975 678999999988743345555544432211 011 112357999999998876543200
Q ss_pred chhhhhhcccCCCccccccccccceEEeccccccCCh--HHHHHHHHHHhccCcEEEEeccCC
Q 001607 300 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLYAKHRWCITGTPI 360 (1045)
Q Consensus 300 ~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~--~S~~~~al~~L~a~~Rw~LTGTPi 360 (1045)
..+. ...+||+||||++-.. .....+.+..+.....+++|+|.-
T Consensus 266 ---------------~~l~--~v~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~ 311 (518)
T PLN00206 266 ---------------IELD--NVSVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVS 311 (518)
T ss_pred ---------------ccch--heeEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCC
Confidence 0122 3467999999987543 234445555666778899999953
No 54
>PTZ00110 helicase; Provisional
Probab=98.00 E-value=4.7e-05 Score=93.01 Aligned_cols=110 Identities=12% Similarity=0.109 Sum_probs=69.1
Q ss_pred cEEEEeCch-hHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccch
Q 001607 223 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 301 (1045)
Q Consensus 223 ~tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~ 301 (1045)
.+|||||.- |..|+.+++.++.....+++.+..|...... .........+|+|+|.+.|...+...
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~-----q~~~l~~~~~IlVaTPgrL~d~l~~~-------- 271 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRG-----QIYALRRGVEILIACPGRLIDFLESN-------- 271 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHH-----HHHHHHcCCCEEEECHHHHHHHHHcC--------
Confidence 489999974 6789999999998554566665555422110 01112245799999999887654320
Q ss_pred hhhhhcccCCCccccccccccceEEeccccccCChH--HHHHHHHHHhcc-CcEEEEeccC
Q 001607 302 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTP 359 (1045)
Q Consensus 302 ~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~--S~~~~al~~L~a-~~Rw~LTGTP 359 (1045)
.+.--...+||+||||++-... -...+.+..++. ...+++|+|.
T Consensus 272 --------------~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~ 318 (545)
T PTZ00110 272 --------------VTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATW 318 (545)
T ss_pred --------------CCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 0111246789999999976532 233344444543 4568899994
No 55
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=97.99 E-value=2.3e-05 Score=93.93 Aligned_cols=111 Identities=18% Similarity=0.241 Sum_probs=79.7
Q ss_pred EEEEeCchhH-HHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccchh
Q 001607 224 TLIVCPAPIL-AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRR 302 (1045)
Q Consensus 224 tLIV~P~SLl-~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~~ 302 (1045)
+...+|+.++ .|=...+.+|+.|-+++|....|+-+.... ......-..+..|+||=|+..+......
T Consensus 314 ~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r-~~~l~~l~~G~~~ivVGTHALiQd~V~F---------- 382 (677)
T COG1200 314 AALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKAR-KEILEQLASGEIDIVVGTHALIQDKVEF---------- 382 (677)
T ss_pred eEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHH-HHHHHHHhCCCCCEEEEcchhhhcceee----------
Confidence 5677999887 699999999997667999999998543211 1111223346689999999998876532
Q ss_pred hhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHh-c-cCcEEEEeccCCCCChh
Q 001607 303 FMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL-Y-AKHRWCITGTPIQRKLD 365 (1045)
Q Consensus 303 ~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L-~-a~~Rw~LTGTPiqN~l~ 365 (1045)
-+..+||+||=|+..- .....++.- . ..|.++||+|||+..+.
T Consensus 383 -----------------~~LgLVIiDEQHRFGV---~QR~~L~~KG~~~Ph~LvMTATPIPRTLA 427 (677)
T COG1200 383 -----------------HNLGLVIIDEQHRFGV---HQRLALREKGEQNPHVLVMTATPIPRTLA 427 (677)
T ss_pred -----------------cceeEEEEeccccccH---HHHHHHHHhCCCCCcEEEEeCCCchHHHH
Confidence 1356899999999963 333344433 3 57999999999999874
No 56
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=97.98 E-value=5.8e-05 Score=93.38 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=69.1
Q ss_pred cEEEEeCc-hhHHHHHHHHHHhcCC-CCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 223 ATLIVCPA-PILAQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 223 ~tLIV~P~-SLl~qW~~Ei~k~~~~-~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
.+||+||. .|..||.+++.++... +.+++..++|...... .........+|||+|.+.+...+..
T Consensus 76 ~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~-----q~~~l~~~~~IVVgTPgrl~d~l~r-------- 142 (629)
T PRK11634 76 QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV-----QLRALRQGPQIVVGTPGRLLDHLKR-------- 142 (629)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHH-----HHHHhcCCCCEEEECHHHHHHHHHc--------
Confidence 58999997 4678999999887632 3577777666532110 0011123578999999998765432
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCChH--HHHHHHHHHhcc-CcEEEEeccC
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTP 359 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~--S~~~~al~~L~a-~~Rw~LTGTP 359 (1045)
..+.--....|||||||.+-+.. ......+..++. ...+++|+|+
T Consensus 143 --------------~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~ 190 (629)
T PRK11634 143 --------------GTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 (629)
T ss_pred --------------CCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccC
Confidence 01222245679999999764332 333444455654 4468899995
No 57
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.96 E-value=7.3e-05 Score=90.05 Aligned_cols=113 Identities=15% Similarity=0.107 Sum_probs=70.4
Q ss_pred CcEEEEeCc-hhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 222 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
..+|||+|. .|..||.+++..+...-++++..+.|...... ..........+|+|+|.+.|.......
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~----~~~~~~~~~~~Iiv~TP~~Ll~~~~~~------- 231 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDK----QLKQLEARFCDILVATPGRLLDFNQRG------- 231 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHH----HHHHHhCCCCCEEEECHHHHHHHHHcC-------
Confidence 468999997 56789999998887544678888887633210 001111245799999999986533210
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCChH--HHHHHHHHHhc---cCcEEEEeccCC
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY---AKHRWCITGTPI 360 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~--S~~~~al~~L~---a~~Rw~LTGTPi 360 (1045)
.+.--...+||+||+|.+.+.. ....+.+..+. ....+++|+|..
T Consensus 232 ---------------~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~ 281 (475)
T PRK01297 232 ---------------EVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFT 281 (475)
T ss_pred ---------------CcccccCceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecC
Confidence 0111235789999999986532 22333334332 245789999953
No 58
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.96 E-value=8e-05 Score=88.35 Aligned_cols=111 Identities=17% Similarity=0.126 Sum_probs=70.6
Q ss_pred CcEEEEeCch-hHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhh-hcCccEEEEehHHHHhhcccCCCCCcc
Q 001607 222 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE-LVGADIVLTTYDVLKEDLSHDSDRHEG 299 (1045)
Q Consensus 222 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~-l~~~dVVItTY~~l~~d~~~~~~~~~~ 299 (1045)
..+||+||.. |..||.+++.++.....+++..+.|...... .... ....||+|+|.+.+...+..
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~------~~~~l~~~~~IlV~TP~~l~~~l~~------- 150 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDK------QLKVLESGVDILIGTTGRLIDYAKQ------- 150 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH------HHHHhcCCCCEEEECHHHHHHHHHc-------
Confidence 3689999975 6689999998887655688888777533210 1111 23479999999998765431
Q ss_pred chhhhhhcccCCCccccccccccceEEeccccccCChH--HHHHHHHHHhcc---CcEEEEeccCC
Q 001607 300 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA---KHRWCITGTPI 360 (1045)
Q Consensus 300 ~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~--S~~~~al~~L~a---~~Rw~LTGTPi 360 (1045)
..+.--...+||+||||++-... ......+..+.. ...+++|+|+-
T Consensus 151 ---------------~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~ 201 (423)
T PRK04837 151 ---------------NHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLS 201 (423)
T ss_pred ---------------CCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCC
Confidence 01222346789999999975432 222233334432 23578899963
No 59
>COG4889 Predicted helicase [General function prediction only]
Probab=97.91 E-value=1.7e-05 Score=95.37 Aligned_cols=116 Identities=21% Similarity=0.168 Sum_probs=61.8
Q ss_pred CcEEEEeCc-hhHHHHHHHHHHhcCCCCCeEEEEeCCCCCcccccc--------------------ccchhhhcCccEEE
Q 001607 222 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTS--------------------IMDISELVGADIVL 280 (1045)
Q Consensus 222 ~~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~--------------------~~~~~~l~~~dVVI 280 (1045)
..+|.+||+ +|+.|=.+|+..-..- .++........+...+... .........--||+
T Consensus 207 ~~iL~LvPSIsLLsQTlrew~~~~~l-~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvF 285 (1518)
T COG4889 207 ARILFLVPSISLLSQTLREWTAQKEL-DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVF 285 (1518)
T ss_pred hheEeecchHHHHHHHHHHHhhccCc-cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEE
Confidence 478999997 7888877776654422 2333333332221111000 00001112233788
Q ss_pred EehHHHHhhcccCCCCCccchhhhhhcccCCCccccccccccceEEeccccccCChH------HHHHH--HHHHhccCcE
Q 001607 281 TTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA------AAATE--MALRLYAKHR 352 (1045)
Q Consensus 281 tTY~~l~~d~~~~~~~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~------S~~~~--al~~L~a~~R 352 (1045)
.||..+-.-... ....--.|+.||+||||+--... |..++ .-..+++..|
T Consensus 286 sTYQSl~~i~eA----------------------Qe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kR 343 (1518)
T COG4889 286 STYQSLPRIKEA----------------------QEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKR 343 (1518)
T ss_pred EcccchHHHHHH----------------------HHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHh
Confidence 888876542210 01222369999999999953321 11111 1234678889
Q ss_pred EEEeccCC
Q 001607 353 WCITGTPI 360 (1045)
Q Consensus 353 w~LTGTPi 360 (1045)
+-+|+||=
T Consensus 344 lYmTATPk 351 (1518)
T COG4889 344 LYMTATPK 351 (1518)
T ss_pred hhcccCch
Confidence 99999994
No 60
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.83 E-value=0.00015 Score=90.82 Aligned_cols=108 Identities=12% Similarity=0.000 Sum_probs=65.9
Q ss_pred CcEEEEeCch-hHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 222 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
+.+||++|.. +..||.+.+.+++ ..++.+++|........ ........+..+|||.|.+.+..
T Consensus 191 ~~vLvLvPt~~L~~Q~~~~l~~~f---g~~v~~~~s~~s~~~r~-~~~~~~~~g~~~IVVgTrsal~~------------ 254 (679)
T PRK05580 191 KQALVLVPEIALTPQMLARFRARF---GAPVAVLHSGLSDGERL-DEWRKAKRGEAKVVIGARSALFL------------ 254 (679)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHh---CCCEEEEECCCCHHHHH-HHHHHHHcCCCCEEEeccHHhcc------------
Confidence 4699999975 7799999999988 36888898864321000 00011122457899999876532
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCC--hHHHHH--HHH---H-HhccCcEEEEeccCCCC
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES--NAAAAT--EMA---L-RLYAKHRWCITGTPIQR 362 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn--~~S~~~--~al---~-~L~a~~Rw~LTGTPiqN 362 (1045)
++. +...||+||+|...- .....+ +.+ + .......+++|+||...
T Consensus 255 ---------------p~~--~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~~~il~SATps~~ 307 (679)
T PRK05580 255 ---------------PFK--NLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENIPVVLGSATPSLE 307 (679)
T ss_pred ---------------ccc--CCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccCCCEEEEcCCCCHH
Confidence 122 367899999997532 111111 111 1 22345678889999643
No 61
>PRK09401 reverse gyrase; Reviewed
Probab=97.82 E-value=0.00015 Score=95.09 Aligned_cols=88 Identities=14% Similarity=0.116 Sum_probs=56.5
Q ss_pred CcEEEEeCch-hHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhh--hcCccEEEEehHHHHhhcccCCCCCc
Q 001607 222 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE--LVGADIVLTTYDVLKEDLSHDSDRHE 298 (1045)
Q Consensus 222 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~--l~~~dVVItTY~~l~~d~~~~~~~~~ 298 (1045)
..+|||||.. |+.||.+.+.++.....+.+.+..|........ ....... ...++|+|+|.+.+...+..
T Consensus 124 ~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~e-k~~~~~~l~~~~~~IlV~Tp~rL~~~~~~------ 196 (1176)
T PRK09401 124 KKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKE-KEEFLERLKEGDFDILVTTSQFLSKNFDE------ 196 (1176)
T ss_pred CeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhH-HHHHHHHHhcCCCCEEEECHHHHHHHHHh------
Confidence 4689999985 678999999999854455554444332110000 0001111 24589999999998875421
Q ss_pred cchhhhhhcccCCCccccccccccceEEeccccccC
Q 001607 299 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 334 (1045)
Q Consensus 299 ~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iK 334 (1045)
+....++.||+||||++-
T Consensus 197 ------------------l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 197 ------------------LPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred ------------------ccccccCEEEEEChHHhh
Confidence 333458999999999864
No 62
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.82 E-value=0.00016 Score=88.93 Aligned_cols=112 Identities=14% Similarity=0.127 Sum_probs=70.4
Q ss_pred CcEEEEeCch-hHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhh-hcCccEEEEehHHHHhhcccCCCCCcc
Q 001607 222 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE-LVGADIVLTTYDVLKEDLSHDSDRHEG 299 (1045)
Q Consensus 222 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~-l~~~dVVItTY~~l~~d~~~~~~~~~~ 299 (1045)
..+|||||.- |..|+.+++.++...-.+++..++|..... ..... ...+||||+|.+.|...+....
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~------~q~~~l~~~~dIiV~TP~rL~~~l~~~~----- 153 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYD------KQRELLQQGVDVIIATPGRLIDYVKQHK----- 153 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHH------HHHHHHhCCCCEEEECHHHHHHHHHhcc-----
Confidence 4699999975 678999999999865567888777763321 01111 2357999999998876542100
Q ss_pred chhhhhhcccCCCccccccccccceEEeccccccCChH--HHHHHHHHHhc---cCcEEEEeccCC
Q 001607 300 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY---AKHRWCITGTPI 360 (1045)
Q Consensus 300 ~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~--S~~~~al~~L~---a~~Rw~LTGTPi 360 (1045)
.+.--...+|||||||.+-... ......+..+. ....+++|+|.-
T Consensus 154 ----------------~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~ 203 (572)
T PRK04537 154 ----------------VVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLS 203 (572)
T ss_pred ----------------ccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCcc
Confidence 0111235679999999875422 22223334443 345788999953
No 63
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=97.75 E-value=0.00035 Score=80.96 Aligned_cols=125 Identities=10% Similarity=0.009 Sum_probs=68.7
Q ss_pred cEEEEeCc-hhHHHHHHHHHHhcC----CCCCeEEEEeCCCCCc---cc-------cccc-----cchhhhcCccEEEEe
Q 001607 223 ATLIVCPA-PILAQWDAEITRHTR----PGSLKTCIYEGARNSS---LS-------DTSI-----MDISELVGADIVLTT 282 (1045)
Q Consensus 223 ~tLIV~P~-SLl~qW~~Ei~k~~~----~~~l~v~vy~G~~~~~---~~-------~~~~-----~~~~~l~~~dVVItT 282 (1045)
++++|+|. +++.||.+.+..++. .....+..+.|..... .. .... .........+|++|+
T Consensus 41 ~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~ 120 (357)
T TIGR03158 41 DTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTN 120 (357)
T ss_pred CEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEec
Confidence 57999996 577899888888872 1246677788752111 00 0000 001112467899999
Q ss_pred hHHHHhhcccCCCCCccchhhhhhcccCCCccccccccccceEEeccccccCChHH-------HHHHHHHHhc-cCcEEE
Q 001607 283 YDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAA-------AATEMALRLY-AKHRWC 354 (1045)
Q Consensus 283 Y~~l~~d~~~~~~~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S-------~~~~al~~L~-a~~Rw~ 354 (1045)
++.+..-..... .++........-.+..||+||+|.+..... .....+.... ..+.++
T Consensus 121 p~~l~~llr~~~--------------~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~ 186 (357)
T TIGR03158 121 PDIFVYLTRFAY--------------IDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVF 186 (357)
T ss_pred HHHHHHHHhhhc--------------cCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEE
Confidence 999865321100 000000001123578999999999875321 1112222222 357899
Q ss_pred EeccCCC
Q 001607 355 ITGTPIQ 361 (1045)
Q Consensus 355 LTGTPiq 361 (1045)
+||||-.
T Consensus 187 lSAT~~~ 193 (357)
T TIGR03158 187 LSATPDP 193 (357)
T ss_pred EecCCCH
Confidence 9999854
No 64
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=97.72 E-value=0.00017 Score=91.71 Aligned_cols=114 Identities=18% Similarity=0.187 Sum_probs=72.3
Q ss_pred CcEEEEeCchhH-HHHHHHHHHhcCC--CCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCc
Q 001607 222 GATLIVCPAPIL-AQWDAEITRHTRP--GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 298 (1045)
Q Consensus 222 ~~tLIV~P~SLl-~qW~~Ei~k~~~~--~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~ 298 (1045)
...|+|-|..-+ ..=.+.+.++... ..+++.+|+|....... ..-.-...||+||+|+++-..+-...+.
T Consensus 116 a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r-----~~~~~~pp~IllTNpdMLh~~llr~~~~-- 188 (851)
T COG1205 116 ARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEER-----RAIIRNPPDILLTNPDMLHYLLLRNHDA-- 188 (851)
T ss_pred ccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHH-----HHHHhCCCCEEEeCHHHHHHHhccCcch--
Confidence 368999997655 3335667776642 25788999998543211 1223456899999999997644221110
Q ss_pred cchhhhhhcccCCCccccccccccceEEeccccccCChH-HHHHHHHHHhcc--------CcEEEEecc
Q 001607 299 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMALRLYA--------KHRWCITGT 358 (1045)
Q Consensus 299 ~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~-S~~~~al~~L~a--------~~Rw~LTGT 358 (1045)
+ ....-++.+||+||+|..+..- |..+-.+++|.- ..-++.|+|
T Consensus 189 ----~------------~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT 241 (851)
T COG1205 189 ----W------------LWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSAT 241 (851)
T ss_pred ----H------------HHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEecc
Confidence 0 1112238899999999987644 666666666632 344788888
No 65
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.71 E-value=1.1e-05 Score=100.85 Aligned_cols=106 Identities=12% Similarity=-0.018 Sum_probs=78.2
Q ss_pred HhhhhhcchHHHhhhhHHHHHHHHHhHHHHHHHHHHHH--HHHHHHhhccC-CCCC----cCceeEeeCC----------
Q 001607 539 IEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAM--AVVEEHSEDFR-LDPL----LNIHLHHNLT---------- 601 (1045)
Q Consensus 539 ~e~~~~~rkvlifsq~~a~L~ii~~~~~~a~~~y~~~l--~~~~~~~~~f~-~d~~----~~~~~~~nl~---------- 601 (1045)
...++-+.++++|||+...++.++..|.........-. +...+-...|. +|-+ .....+.||.
T Consensus 1215 iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t~d~~dc~~~fk~I~clll~~~~~~~GLNL~eA~Hvfl~eP 1294 (1394)
T KOG0298|consen 1215 IKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETEDFDDCIICFKSIDCLLLFVSKGSKGLNLIEATHVFLVEP 1294 (1394)
T ss_pred HhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCCcchhhhhhhcccceEEEEEeccCcccccHHhhhhhheecc
Confidence 34556668999999999999999988877766544332 23333333342 2322 1114456665
Q ss_pred cCCcchhhhhh-hhhhcCCCCceEEEeccccCCccccchhHhhh
Q 001607 602 EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKC 644 (1045)
Q Consensus 602 ~~np~~~~QA~-R~hriGq~~~v~~~r~~~~~t~ee~~~~~~k~ 644 (1045)
=.||..+.||+ |+|||||++|+.|||++-.+|+||.|....+-
T Consensus 1295 iLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~ 1338 (1394)
T KOG0298|consen 1295 ILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITS 1338 (1394)
T ss_pred ccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhh
Confidence 48999999999 99999999999999999999999999877543
No 66
>PRK13767 ATP-dependent helicase; Provisional
Probab=97.69 E-value=0.00027 Score=90.99 Aligned_cols=113 Identities=18% Similarity=0.081 Sum_probs=65.5
Q ss_pred CcEEEEeCc-hhHHHHHHH-------HHHhc-----CCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHh
Q 001607 222 GATLIVCPA-PILAQWDAE-------ITRHT-----RPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKE 288 (1045)
Q Consensus 222 ~~tLIV~P~-SLl~qW~~E-------i~k~~-----~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~ 288 (1045)
..+|||+|. .|..|+.+. +.+++ ..+.+++.+++|....... ........+|+|||.+.+..
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r-----~~~l~~~p~IlVtTPE~L~~ 159 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEK-----QKMLKKPPHILITTPESLAI 159 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHH-----HHHHhCCCCEEEecHHHHHH
Confidence 358999997 566676653 33443 1236788999987432110 00112357899999999865
Q ss_pred hcccCCCCCccchhhhhhcccCCCccccccccccceEEeccccccCChH--HHHHHHHHHh---c--cCcEEEEeccC
Q 001607 289 DLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRL---Y--AKHRWCITGTP 359 (1045)
Q Consensus 289 d~~~~~~~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~--S~~~~al~~L---~--a~~Rw~LTGTP 359 (1045)
.+... .....|. ....||+||+|.+-+.. ......+.+| . ...+|++|+|+
T Consensus 160 ll~~~------------------~~~~~l~--~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl 217 (876)
T PRK13767 160 LLNSP------------------KFREKLR--TVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATI 217 (876)
T ss_pred HhcCh------------------hHHHHHh--cCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEeccc
Confidence 43210 0001122 34679999999987432 2222233332 2 35689999996
No 67
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.63 E-value=0.00039 Score=68.90 Aligned_cols=101 Identities=15% Similarity=0.107 Sum_probs=57.5
Q ss_pred CcEEEEeCchhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccch
Q 001607 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 301 (1045)
Q Consensus 222 ~~tLIV~P~SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~ 301 (1045)
+.+||+.|.-++ .+|+.+... ...+. |+..-. ........-|-+++|.++..-+..
T Consensus 34 ~rvLvL~PTRvv---a~em~~aL~--~~~~~-~~t~~~---------~~~~~g~~~i~vMc~at~~~~~~~--------- 89 (148)
T PF07652_consen 34 LRVLVLAPTRVV---AEEMYEALK--GLPVR-FHTNAR---------MRTHFGSSIIDVMCHATYGHFLLN--------- 89 (148)
T ss_dssp --EEEEESSHHH---HHHHHHHTT--TSSEE-EESTTS---------S----SSSSEEEEEHHHHHHHHHT---------
T ss_pred CeEEEecccHHH---HHHHHHHHh--cCCcc-cCceee---------eccccCCCcccccccHHHHHHhcC---------
Confidence 689999999877 456666663 44432 332211 112335556889999998764421
Q ss_pred hhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHH-Hhc---cCcEEEEeccCCC
Q 001607 302 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMAL-RLY---AKHRWCITGTPIQ 361 (1045)
Q Consensus 302 ~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~-~L~---a~~Rw~LTGTPiq 361 (1045)
+....+|++||+||+|.. .+.|-+++-.. .+. ....+.+|+||--
T Consensus 90 --------------p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 90 --------------PCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPPG 138 (148)
T ss_dssp --------------SSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT
T ss_pred --------------cccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCCC
Confidence 233468999999999996 45555544332 232 1357899999953
No 68
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.58 E-value=0.0016 Score=77.25 Aligned_cols=107 Identities=21% Similarity=0.277 Sum_probs=73.7
Q ss_pred cEEEEeCch-hHHHHHHHHHHhcCCCCC-eEEEEeCCCCCccccccccchhhhcC-ccEEEEehHHHHhhcccCCCCCcc
Q 001607 223 ATLIVCPAP-ILAQWDAEITRHTRPGSL-KTCIYEGARNSSLSDTSIMDISELVG-ADIVLTTYDVLKEDLSHDSDRHEG 299 (1045)
Q Consensus 223 ~tLIV~P~S-Ll~qW~~Ei~k~~~~~~l-~v~vy~G~~~~~~~~~~~~~~~~l~~-~dVVItTY~~l~~d~~~~~~~~~~ 299 (1045)
.+||++|.- |..|-..++..+.....+ .+++|.|.... .+...+.. .||||+|-..+...+...
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~-------~Q~~~l~~gvdiviaTPGRl~d~le~g------ 233 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKG-------PQLRDLERGVDVVIATPGRLIDLLEEG------ 233 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCcc-------HHHHHHhcCCcEEEeCChHHHHHHHcC------
Confidence 499999986 667999999999976556 45666666432 23444444 899999999998876431
Q ss_pred chhhhhhcccCCCccccccccccceEEeccccccCC--hHHHHHHHHHHh-ccCc-EEEEecc
Q 001607 300 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES--NAAAATEMALRL-YAKH-RWCITGT 358 (1045)
Q Consensus 300 ~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn--~~S~~~~al~~L-~a~~-Rw~LTGT 358 (1045)
.+.--...++|||||.++-. ...+.-+.+..+ +... .++-|+|
T Consensus 234 ----------------~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saT 280 (519)
T KOG0331|consen 234 ----------------SLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSAT 280 (519)
T ss_pred ----------------CccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeee
Confidence 12223457899999999743 346777777777 4433 5666666
No 69
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.55 E-value=0.00033 Score=84.68 Aligned_cols=108 Identities=11% Similarity=0.015 Sum_probs=67.9
Q ss_pred CcEEEEeCc-hhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 222 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
+.+||++|. ++..|+.+.+++.+ ..++.+++|......... .......+..+|||+|.+.+..
T Consensus 26 ~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~-~~~~~~~g~~~IVVGTrsalf~------------ 89 (505)
T TIGR00595 26 KSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQ-AWRKVKNGEILVVIGTRSALFL------------ 89 (505)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHH-HHHHHHcCCCCEEECChHHHcC------------
Confidence 469999997 57789999999988 357888888633211000 0011123467899999987632
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccC--ChHHH------HHHHHHHhccCcEEEEeccCCCC
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE--SNAAA------ATEMALRLYAKHRWCITGTPIQR 362 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iK--n~~S~------~~~al~~L~a~~Rw~LTGTPiqN 362 (1045)
++. +.++||+||.|... ..... .+...........+++|+||...
T Consensus 90 ---------------p~~--~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsle 142 (505)
T TIGR00595 90 ---------------PFK--NLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLE 142 (505)
T ss_pred ---------------ccc--CCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHH
Confidence 122 35899999999853 22111 11222234456788999999743
No 70
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=97.54 E-value=0.00085 Score=84.82 Aligned_cols=112 Identities=17% Similarity=0.172 Sum_probs=68.0
Q ss_pred cEEEEeCch-hHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccch
Q 001607 223 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 301 (1045)
Q Consensus 223 ~tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~ 301 (1045)
..|||+|.- |..|=..++.++. ...+++.+|+|...... ........+|||||.+.+...+-.. ..
T Consensus 83 ~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~------r~~i~~~~~IivtTPd~L~~~~L~~------~~ 149 (742)
T TIGR03817 83 TALYLAPTKALAADQLRAVRELT-LRGVRPATYDGDTPTEE------RRWAREHARYVLTNPDMLHRGILPS------HA 149 (742)
T ss_pred EEEEEcChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHHH------HHHHhcCCCEEEEChHHHHHhhccc------hh
Confidence 689999975 5567777788876 34688999999743210 1111234789999999886432110 00
Q ss_pred hhhhhcccCCCccccccccccceEEeccccccCCh-HHHHHHHHHHhc--------cCcEEEEeccC
Q 001607 302 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-AAAATEMALRLY--------AKHRWCITGTP 359 (1045)
Q Consensus 302 ~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~-~S~~~~al~~L~--------a~~Rw~LTGTP 359 (1045)
++. ..|. .-.+||+||||.+.+. .+.....+.+|+ ....+++|+|.
T Consensus 150 ~~~----------~~l~--~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi 204 (742)
T TIGR03817 150 RWA----------RFLR--RLRYVVIDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATT 204 (742)
T ss_pred HHH----------HHHh--cCCEEEEeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCC
Confidence 000 0122 3478999999998652 234444444432 23578999993
No 71
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=97.39 E-value=0.00081 Score=85.89 Aligned_cols=130 Identities=16% Similarity=0.176 Sum_probs=71.4
Q ss_pred CcEEEEeCc-hhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccc--hhhhcCccEEEEehHHHHhhcccCCCCCc
Q 001607 222 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMD--ISELVGADIVLTTYDVLKEDLSHDSDRHE 298 (1045)
Q Consensus 222 ~~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~--~~~l~~~dVVItTY~~l~~d~~~~~~~~~ 298 (1045)
+.+|||+|. +|+.+....+... .+++..+.|....... ..... ......++|+++|-+.+...-..
T Consensus 501 GiTLVISPLiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq-~~ilr~l~s~~g~~~ILyvTPERL~~~d~l------ 569 (1195)
T PLN03137 501 GITLVISPLVSLIQDQIMNLLQA----NIPAASLSAGMEWAEQ-LEILQELSSEYSKYKLLYVTPEKVAKSDSL------ 569 (1195)
T ss_pred CcEEEEeCHHHHHHHHHHHHHhC----CCeEEEEECCCCHHHH-HHHHHHHHhcCCCCCEEEEChHHhhcchHH------
Confidence 469999997 5665444444432 4666666654321100 00000 01225689999999987642100
Q ss_pred cchhhhhhcccCCCcccccc-ccccceEEeccccccCChHH---HHHHH----HHHhccCcEEEEeccCCCCChhhhhhc
Q 001607 299 GDRRFMRFQKRYPVIPTLLT-RIFWWRICLDEAQMVESNAA---AATEM----ALRLYAKHRWCITGTPIQRKLDDLYGL 370 (1045)
Q Consensus 299 ~~~~~~r~~k~~~~~~s~L~-~i~w~rVIlDEAH~iKn~~S---~~~~a----l~~L~a~~Rw~LTGTPiqN~l~DL~~L 370 (1045)
.+.. ..+. .....+|||||||.+-.... .-++. ...+.....++||+|...+...|+...
T Consensus 570 -----l~~L-------~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~ 637 (1195)
T PLN03137 570 -----LRHL-------ENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQA 637 (1195)
T ss_pred -----HHHH-------HhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHH
Confidence 0000 0011 12357899999999854221 11222 223455678999999988877777776
Q ss_pred cccc
Q 001607 371 LRFL 374 (1045)
Q Consensus 371 L~FL 374 (1045)
|...
T Consensus 638 L~l~ 641 (1195)
T PLN03137 638 LGLV 641 (1195)
T ss_pred cCCC
Confidence 6543
No 72
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=97.35 E-value=0.00062 Score=78.82 Aligned_cols=120 Identities=13% Similarity=0.061 Sum_probs=67.4
Q ss_pred CcEEEEeCc-hhHHHHHHHHHHhcCCCCCeEEEEeCCCCCcc----cccc-c--------cchhhhcCccEEEEehHHHH
Q 001607 222 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSL----SDTS-I--------MDISELVGADIVLTTYDVLK 287 (1045)
Q Consensus 222 ~~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~----~~~~-~--------~~~~~l~~~dVVItTY~~l~ 287 (1045)
+.+++|+|. +++.|+.+.+..++ +. ++..++|...... .... . .........+|+++|.+.+.
T Consensus 30 ~~ii~v~P~~~L~~q~~~~l~~~f--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~ 106 (358)
T TIGR01587 30 DRVIIALPTRATINAMYRRAKELF--GS-NLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVL 106 (358)
T ss_pred CeEEEEeehHHHHHHHHHHHHHHh--Cc-ccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHH
Confidence 468999995 67899999999987 32 4555565422100 0000 0 00111235679999999987
Q ss_pred hhcccCCCCCccchhhhhhcccCCCccccccccccceEEeccccccCChHH-HHHHHHHHhc--cCcEEEEeccCC
Q 001607 288 EDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAA-AATEMALRLY--AKHRWCITGTPI 360 (1045)
Q Consensus 288 ~d~~~~~~~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S-~~~~al~~L~--a~~Rw~LTGTPi 360 (1045)
..+..... ...-.+..+.-.+||+||+|.+....- .....+..+. ....+++|||+-
T Consensus 107 ~~~~~~~~----------------~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i~~SATlp 166 (358)
T TIGR01587 107 KSVFGEFG----------------HYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPILLMSATLP 166 (358)
T ss_pred HHHhcccc----------------hHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEecCch
Confidence 65432000 000012233347899999999875422 2233333333 345688999963
No 73
>PHA02653 RNA helicase NPH-II; Provisional
Probab=97.34 E-value=0.0067 Score=75.44 Aligned_cols=103 Identities=11% Similarity=0.088 Sum_probs=57.8
Q ss_pred CcEEEEeCch-hHHHHHHHHHHhcCC---CCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCC
Q 001607 222 GATLIVCPAP-ILAQWDAEITRHTRP---GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 297 (1045)
Q Consensus 222 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~---~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~ 297 (1045)
++++|++|.- ++.|...++.+...- +..++.+..|...... ........+++|.|.......
T Consensus 223 ~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~------~~t~~k~~~Ilv~T~~L~l~~-------- 288 (675)
T PHA02653 223 RPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDEL------INTNPKPYGLVFSTHKLTLNK-------- 288 (675)
T ss_pred cEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHH------hhcccCCCCEEEEeCcccccc--------
Confidence 5799999974 456888888775521 2344555455432110 011122467888874321111
Q ss_pred ccchhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhc-c-CcEEEEeccC
Q 001607 298 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY-A-KHRWCITGTP 359 (1045)
Q Consensus 298 ~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~-a-~~Rw~LTGTP 359 (1045)
| -....||+||||..-...-.....++.+. . +..+++|||+
T Consensus 289 -------------------L--~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~rq~ILmSATl 331 (675)
T PHA02653 289 -------------------L--FDYGTVIIDEVHEHDQIGDIIIAVARKHIDKIRSLFLMTATL 331 (675)
T ss_pred -------------------c--ccCCEEEccccccCccchhHHHHHHHHhhhhcCEEEEEccCC
Confidence 1 24678999999997544323323333332 2 3579999996
No 74
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.24 E-value=0.0041 Score=78.81 Aligned_cols=157 Identities=13% Similarity=0.082 Sum_probs=80.7
Q ss_pred CcEEEEeCch-hHHHHHHHH-----HHhcC----CCCCeEEEEeCCCCCcccccccc-chhhh--------cCccEEEEe
Q 001607 222 GATLIVCPAP-ILAQWDAEI-----TRHTR----PGSLKTCIYEGARNSSLSDTSIM-DISEL--------VGADIVLTT 282 (1045)
Q Consensus 222 ~~tLIV~P~S-Ll~qW~~Ei-----~k~~~----~~~l~v~vy~G~~~~~~~~~~~~-~~~~l--------~~~dVVItT 282 (1045)
..+|||||.. +......=+ +.|+. ...+++.+|.+.+..+....... ....+ ..-.|.|+|
T Consensus 90 ~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~n 169 (986)
T PRK15483 90 FKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLIN 169 (986)
T ss_pred cEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCceEEEEEe
Confidence 5799999985 334333322 24442 22377788886542111100000 10111 135699999
Q ss_pred hHHHHhhcccCCCCCccchhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCC-
Q 001607 283 YDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ- 361 (1045)
Q Consensus 283 Y~~l~~d~~~~~~~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiq- 361 (1045)
-+.|.++.... ...++... ... ..|-...+-.=-.||+||+|++... .+..+++..++..+.+--|||--.
T Consensus 170 iqa~n~~~~~~---~~~D~~l~--~g~--~~p~~~i~~~~PivIiDEPh~~~~~-~k~~~~i~~lnpl~~lrysAT~~~~ 241 (986)
T PRK15483 170 AGMLNSASMTR---DDYDQTLL--GGF--TSPVDALAATRPVVIIDEPHRFPRD-NKFYQAIEALKPQMIIRFGATFPDI 241 (986)
T ss_pred hHHhccccccc---chhhhhhc--cCC--CChHHHHHhCCCEEEEECCCCCCcc-hHHHHHHHhcCcccEEEEeeecCCc
Confidence 99997642100 00000000 000 0000011112236999999999752 346688899999999999999543
Q ss_pred ------C--ChhhhhhcccccCCCCCCChHHHHHHHcC
Q 001607 362 ------R--KLDDLYGLLRFLKSSPFSISRWWIEVIRD 391 (1045)
Q Consensus 362 ------N--~l~DL~~LL~FL~p~~~~~~~~f~~~~~~ 391 (1045)
| ...|.|+++.=|++ ...|...+..
T Consensus 242 ~~~~g~~~~~~~d~~NlvY~Lda-----vdAyn~~LVK 274 (986)
T PRK15483 242 TEGKGKNKCTRKDYYNLQFDLNA-----VDSFNDGLVK 274 (986)
T ss_pred cccccccccccccccCceeecCH-----HHHHHhCCcc
Confidence 1 12246666655543 4555554443
No 75
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=97.18 E-value=0.0016 Score=82.89 Aligned_cols=113 Identities=20% Similarity=0.199 Sum_probs=72.4
Q ss_pred CcEEEEeCchhHH-HHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 222 GATLIVCPAPILA-QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~P~SLl~-qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
+-+-|+||+.|+. |=.+-|..-+.+=.++|-+...-..... .......-..++.||||=|+..|.+++..
T Consensus 644 KQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE-~~~il~~la~G~vDIvIGTHrLL~kdv~F-------- 714 (1139)
T COG1197 644 KQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKE-QKEILKGLAEGKVDIVIGTHRLLSKDVKF-------- 714 (1139)
T ss_pred CeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHH-HHHHHHHHhcCCccEEEechHhhCCCcEE--------
Confidence 3588999999884 5555555555322244444433221110 01111223346799999999999987642
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhcc-CcEEEEeccCCCCChh
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYA-KHRWCITGTPIQRKLD 365 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a-~~Rw~LTGTPiqN~l~ 365 (1045)
-+-..||+||=|+..=. .=..++.|++ .+.+-||+|||+..|.
T Consensus 715 -------------------kdLGLlIIDEEqRFGVk---~KEkLK~Lr~~VDvLTLSATPIPRTL~ 758 (1139)
T COG1197 715 -------------------KDLGLLIIDEEQRFGVK---HKEKLKELRANVDVLTLSATPIPRTLN 758 (1139)
T ss_pred -------------------ecCCeEEEechhhcCcc---HHHHHHHHhccCcEEEeeCCCCcchHH
Confidence 12468999999998632 3356777765 5889999999999764
No 76
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=97.08 E-value=0.0023 Score=79.57 Aligned_cols=118 Identities=18% Similarity=0.131 Sum_probs=64.5
Q ss_pred cEEEEeCch-hHHHHHHHHHHhcCCCCCeEEEEeCC-CCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 223 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGA-RNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 223 ~tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~v~vy~G~-~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
.++||+|.. |..||.+++..++..-++.+.+..+. ...... .........+||+++|.+.|..++-...-..
T Consensus 113 ~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~---~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~--- 186 (762)
T TIGR03714 113 GAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYD---ANEKRKIYNSDIVYTTNSALGFDYLIDNLAS--- 186 (762)
T ss_pred ceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccC---HHHHHHhCCCCEEEECchhhhhhHHHHHhhc---
Confidence 589999986 66788877766543225666554332 111000 0011122468999999999965532100000
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCChhhhhhcc
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLL 371 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~LL 371 (1045)
.+ ..+..-...++|+||||.+--. .++..+++||.|-.. .++|...
T Consensus 187 ------~~------~~~~~r~l~~~IVDEaDsILiD-----------eartpliisg~~~~~--~~~y~~~ 232 (762)
T TIGR03714 187 ------NK------EGKFLRPFNYVIVDEVDSVLLD-----------SAQTPLVISGAPRVQ--SNLYHIA 232 (762)
T ss_pred ------ch------hhcccccCcEEEEecHhhHhhc-----------cCcCCeeeeCCCccc--hHHHHHH
Confidence 00 0011225678999999987322 244567888876433 3455543
No 77
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.05 E-value=0.0021 Score=79.83 Aligned_cols=136 Identities=14% Similarity=0.200 Sum_probs=82.3
Q ss_pred cEEEEeCc-hhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccch
Q 001607 223 ATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 301 (1045)
Q Consensus 223 ~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~ 301 (1045)
.++-|+|. +|..--.+-+.+.+.+-+++|.-+.|.... ...+..+.+|+|||-+.+----.. ..++
T Consensus 166 KiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql--------~~tei~~tqiiVTTPEKwDvvTRk----~~~d- 232 (1230)
T KOG0952|consen 166 KIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQL--------TKTEIADTQIIVTTPEKWDVVTRK----SVGD- 232 (1230)
T ss_pred eEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchh--------hHHHHHhcCEEEecccceeeeeee----eccc-
Confidence 68889995 555444455555554447999999998542 334578899999997754211000 0000
Q ss_pred hhhhhcccCCCccccccccccceEEeccccccCChHHH-----HHHHHHHh----ccCcEEEEeccCCCCChhhhhhccc
Q 001607 302 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA-----ATEMALRL----YAKHRWCITGTPIQRKLDDLYGLLR 372 (1045)
Q Consensus 302 ~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~-----~~~al~~L----~a~~Rw~LTGTPiqN~l~DL~~LL~ 372 (1045)
+.|. -.-.+||+||.|.+...... .+++++.. +.-+-++||+| ++| +-.+-+
T Consensus 233 -------------~~l~-~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSAT-lPN----~eDvA~ 293 (1230)
T KOG0952|consen 233 -------------SALF-SLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSAT-LPN----YEDVAR 293 (1230)
T ss_pred -------------hhhh-hheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeecc-CCC----HHHHHH
Confidence 0111 12467999999999877644 34444322 34566889999 333 344567
Q ss_pred ccCCCCCCChHHHHHHHc
Q 001607 373 FLKSSPFSISRWWIEVIR 390 (1045)
Q Consensus 373 FL~p~~~~~~~~f~~~~~ 390 (1045)
||+..++.....|...|.
T Consensus 294 fL~vn~~~glfsFd~~yR 311 (1230)
T KOG0952|consen 294 FLRVNPYAGLFSFDQRYR 311 (1230)
T ss_pred HhcCCCccceeeeccccc
Confidence 888877666555655554
No 78
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.01 E-value=0.0023 Score=73.84 Aligned_cols=97 Identities=14% Similarity=0.146 Sum_probs=70.2
Q ss_pred CCCcEEEEeCchh-HHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCc
Q 001607 220 ATGATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 298 (1045)
Q Consensus 220 ~~~~tLIV~P~SL-l~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~ 298 (1045)
.+-..+||+|.-. .-|=.++|.+|+...++.|....|.+.-.....+..........||+|+|-..|..++....
T Consensus 214 ~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k---- 289 (620)
T KOG0350|consen 214 KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTK---- 289 (620)
T ss_pred cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCC----
Confidence 3457899999865 57999999999987789999999986644333333333444568999999999998875321
Q ss_pred cchhhhhhcccCCCccccccccccceEEeccccccCChH
Q 001607 299 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 337 (1045)
Q Consensus 299 ~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~ 337 (1045)
.+.--+-.++|+|||.++.+..
T Consensus 290 -----------------~f~Lk~LrfLVIDEADRll~qs 311 (620)
T KOG0350|consen 290 -----------------SFDLKHLRFLVIDEADRLLDQS 311 (620)
T ss_pred -----------------CcchhhceEEEechHHHHHHHH
Confidence 1333345679999999997644
No 79
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=96.96 E-value=0.0019 Score=85.05 Aligned_cols=86 Identities=15% Similarity=0.141 Sum_probs=55.5
Q ss_pred CcEEEEeCch-hHHHHHHHHHHhcCCCCCe---EEEEeCCCCCccccccccchhh--hcCccEEEEehHHHHhhcccCCC
Q 001607 222 GATLIVCPAP-ILAQWDAEITRHTRPGSLK---TCIYEGARNSSLSDTSIMDISE--LVGADIVLTTYDVLKEDLSHDSD 295 (1045)
Q Consensus 222 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~---v~vy~G~~~~~~~~~~~~~~~~--l~~~dVVItTY~~l~~d~~~~~~ 295 (1045)
..+|||+|.. |+.|+.+++.+++..-+++ +..|+|...... +...... ...+||||+|...+...+..
T Consensus 122 ~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e---~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--- 195 (1171)
T TIGR01054 122 KRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKE---KKEFMERIENGDFDILITTTMFLSKNYDE--- 195 (1171)
T ss_pred CeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHH---HHHHHHHHhcCCCCEEEECHHHHHHHHHH---
Confidence 3689999975 6689999999988432333 335777532110 0001111 13589999999998765421
Q ss_pred CCccchhhhhhcccCCCccccccccccceEEeccccccCC
Q 001607 296 RHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 335 (1045)
Q Consensus 296 ~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn 335 (1045)
+.. .++.+|+||||++-.
T Consensus 196 ---------------------l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 196 ---------------------LGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred ---------------------hcC-CCCEEEEeChHhhhh
Confidence 222 689999999999754
No 80
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=96.68 E-value=0.008 Score=75.25 Aligned_cols=125 Identities=17% Similarity=0.147 Sum_probs=76.7
Q ss_pred cEEEEeCchhHH-HHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccch
Q 001607 223 ATLIVCPAPILA-QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 301 (1045)
Q Consensus 223 ~tLIV~P~SLl~-qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~ 301 (1045)
.+|-|.|.--+. -=.+-+..|...-+++|.+-||....... +.......||+|||-++|.-.+...
T Consensus 75 ~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er-----~r~~~~PPdILiTTPEsL~lll~~~-------- 141 (814)
T COG1201 75 YALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEK-----QKMLKNPPHILITTPESLAILLNSP-------- 141 (814)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHh-----hhccCCCCcEEEeChhHHHHHhcCH--------
Confidence 578999975443 23333333332236888888887543221 2222345889999999998766420
Q ss_pred hhhhhcccCCCccccccccccceEEeccccccCChH--HHHHHHHHHhc----cCcEEEEeccCCCCChhhhhhcccccC
Q 001607 302 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY----AKHRWCITGTPIQRKLDDLYGLLRFLK 375 (1045)
Q Consensus 302 ~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~--S~~~~al~~L~----a~~Rw~LTGTPiqN~l~DL~~LL~FL~ 375 (1045)
.....|..+. .||+||.|.+.+.+ ++.+-.+.+|. --.|+.||+| +.+..-+.+||.
T Consensus 142 ----------~~r~~l~~vr--~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSAT-----V~~~~~varfL~ 204 (814)
T COG1201 142 ----------KFRELLRDVR--YVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSAT-----VGPPEEVAKFLV 204 (814)
T ss_pred ----------HHHHHhcCCc--EEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhc-----cCCHHHHHHHhc
Confidence 1112344444 49999999998654 55565555553 2569999999 334555566665
Q ss_pred CC
Q 001607 376 SS 377 (1045)
Q Consensus 376 p~ 377 (1045)
+.
T Consensus 205 g~ 206 (814)
T COG1201 205 GF 206 (814)
T ss_pred CC
Confidence 54
No 81
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=96.25 E-value=0.039 Score=69.69 Aligned_cols=117 Identities=14% Similarity=0.013 Sum_probs=60.7
Q ss_pred cEEEEeCch-hHHHHHHHHHHhcCC-----------------------CCCeEEEEeCCCCCccccccccchhhh-cCcc
Q 001607 223 ATLIVCPAP-ILAQWDAEITRHTRP-----------------------GSLKTCIYEGARNSSLSDTSIMDISEL-VGAD 277 (1045)
Q Consensus 223 ~tLIV~P~S-Ll~qW~~Ei~k~~~~-----------------------~~l~v~vy~G~~~~~~~~~~~~~~~~l-~~~d 277 (1045)
..+++||.- |+.|=.+++.++... ..+++..+.|..... .+...+ ...+
T Consensus 64 rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~------~q~~~l~~~p~ 137 (844)
T TIGR02621 64 RLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADN------DEWMLDPHRPA 137 (844)
T ss_pred eEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChH------HHHHhcCCCCc
Confidence 344466864 567888887777631 136666656653211 111222 3468
Q ss_pred EEEEehHHHHhhcccCCCCCccchhhhhhcccCCCc--ccccc---ccccceEEeccccccCChHHHHHHHHHHh--cc-
Q 001607 278 IVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVI--PTLLT---RIFWWRICLDEAQMVESNAAAATEMALRL--YA- 349 (1045)
Q Consensus 278 VVItTY~~l~~d~~~~~~~~~~~~~~~r~~k~~~~~--~s~L~---~i~w~rVIlDEAH~iKn~~S~~~~al~~L--~a- 349 (1045)
|||.|.+.+.+..-. .-|... ..|+. --.-.++|+||||..........+.+..+ ..
T Consensus 138 IIVgT~D~i~sr~L~---------------~gYg~~~~~~pi~ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~ 202 (844)
T TIGR02621 138 VIVGTVDMIGSRLLF---------------SGYGCGFKSRPLHAGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQRPPD 202 (844)
T ss_pred EEEECHHHHcCCccc---------------cccccccccccchhhhhccceEEEEehhhhccccHHHHHHHHHhcccCcc
Confidence 999998777653310 000000 01111 11246799999994333333333333332 12
Q ss_pred ---CcEEEEeccCC
Q 001607 350 ---KHRWCITGTPI 360 (1045)
Q Consensus 350 ---~~Rw~LTGTPi 360 (1045)
...+++|+|+-
T Consensus 203 ~rprQtLLFSAT~p 216 (844)
T TIGR02621 203 FLPLRVVELTATSR 216 (844)
T ss_pred cccceEEEEecCCC
Confidence 35789999973
No 82
>PRK14701 reverse gyrase; Provisional
Probab=96.09 E-value=0.015 Score=78.71 Aligned_cols=87 Identities=15% Similarity=0.197 Sum_probs=55.7
Q ss_pred cEEEEeCch-hHHHHHHHHHHhcCC--CCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCcc
Q 001607 223 ATLIVCPAP-ILAQWDAEITRHTRP--GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 299 (1045)
Q Consensus 223 ~tLIV~P~S-Ll~qW~~Ei~k~~~~--~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~ 299 (1045)
.+|||+|.. |+.|..+.+..++.. ..+++..++|....... ......-..+.+||+|+|.+.+...+..
T Consensus 124 ~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~-~~~~~~l~~g~~dILV~TPgrL~~~~~~------- 195 (1638)
T PRK14701 124 KCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEK-EEFLERIENGDFDILVTTAQFLARNFPE------- 195 (1638)
T ss_pred eEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHH-HHHHHHHhcCCCCEEEECCchhHHhHHH-------
Confidence 689999974 678999999997642 13567778876432100 0000011123589999999877654321
Q ss_pred chhhhhhcccCCCccccccccccceEEeccccccC
Q 001607 300 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 334 (1045)
Q Consensus 300 ~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iK 334 (1045)
+....++.+|+||||.+-
T Consensus 196 -----------------l~~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 196 -----------------MKHLKFDFIFVDDVDAFL 213 (1638)
T ss_pred -----------------HhhCCCCEEEEECceecc
Confidence 222568899999999873
No 83
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=95.54 E-value=0.061 Score=69.93 Aligned_cols=115 Identities=19% Similarity=0.138 Sum_probs=65.6
Q ss_pred cEEEEeCch-hHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccch
Q 001607 223 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 301 (1045)
Q Consensus 223 ~tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~ 301 (1045)
.+++|+=-- |-.|=.++|..+.. ...... ..... ......-.-....|||||-..|.......
T Consensus 305 ~v~fvvDR~dLd~Q~~~~f~~~~~--~~~~~~--~~~s~----~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~-------- 368 (962)
T COG0610 305 KVLFVVDRKDLDDQTSDEFQSFGK--VAFNDP--KAEST----SELKELLEDGKGKIIVTTIQKFNKAVKED-------- 368 (962)
T ss_pred eEEEEechHHHHHHHHHHHHHHHH--hhhhcc--cccCH----HHHHHHHhcCCCcEEEEEecccchhhhcc--------
Confidence 355555543 55799999999872 222211 11110 00111111114579999999987765321
Q ss_pred hhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCChhh
Q 001607 302 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDD 366 (1045)
Q Consensus 302 ~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~D 366 (1045)
......-...+||+||||+--.+... ..+-..++.-.-++.|||||...-.+
T Consensus 369 ------------~~~~~~~~~ivvI~DEaHRSQ~G~~~-~~~~~~~~~a~~~gFTGTPi~~~d~~ 420 (962)
T COG0610 369 ------------ELELLKRKNVVVIIDEAHRSQYGELA-KLLKKALKKAIFIGFTGTPIFKEDKD 420 (962)
T ss_pred ------------cccccCCCcEEEEEechhhccccHHH-HHHHHHhccceEEEeeCCcccccccc
Confidence 01234556788999999997554422 12223355567789999999865443
No 84
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=95.46 E-value=0.059 Score=67.95 Aligned_cols=102 Identities=18% Similarity=0.130 Sum_probs=61.1
Q ss_pred CcEEEEeCchhHH----HHHHHHHHhcCCCCCeEEEEeCCCC-CccccccccchhhhcCccEEEEehHHHHhhcccCCCC
Q 001607 222 GATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARN-SSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDR 296 (1045)
Q Consensus 222 ~~tLIV~P~SLl~----qW~~Ei~k~~~~~~l~v~vy~G~~~-~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~ 296 (1045)
..++||+|+..+. .|...+-+++ .+++.++.|... .. ........||++.|...+.-|+-...-.
T Consensus 120 ~~v~VvTpt~~LA~qd~e~~~~l~~~l---Gl~v~~i~g~~~~~~-------~r~~~y~~dIvygT~~~l~fDyLrd~~~ 189 (790)
T PRK09200 120 KGVHLITVNDYLAKRDAEEMGQVYEFL---GLTVGLNFSDIDDAS-------EKKAIYEADIIYTTNSELGFDYLRDNLA 189 (790)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhc---CCeEEEEeCCCCcHH-------HHHHhcCCCEEEECCccccchhHHhccc
Confidence 4689999998663 6777777777 688988877643 11 1123345899999977664432111000
Q ss_pred CccchhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccC
Q 001607 297 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTP 359 (1045)
Q Consensus 297 ~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTP 359 (1045)
.. +.....-...++|+|||+.+-=.. ++.-+++||.|
T Consensus 190 ~~---------------~~~~~~r~~~~~IvDEaDsiLiDe-----------a~tpliisg~~ 226 (790)
T PRK09200 190 DS---------------KEDKVQRPLNYAIIDEIDSILLDE-----------AQTPLIISGKP 226 (790)
T ss_pred cc---------------hhhhcccccceEEEeccccceecc-----------CCCceeeeCCC
Confidence 00 011223457889999999874221 33446777754
No 85
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=95.33 E-value=0.056 Score=60.87 Aligned_cols=200 Identities=13% Similarity=0.034 Sum_probs=94.9
Q ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcCcccchhhHHHHHHHHHHHHHHccCC
Q 001607 430 EECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 509 (1045)
Q Consensus 430 ~e~vv~v~lS~~Q~~~Y~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~il~~L~rLRqiC~HP 509 (1045)
.++.++++|++.|+++|+.+.........+.++... .....++.........+-..+-+|+.+|+||
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~-------------~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP 70 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETND-------------SSESIDSLLDESLVQSMELLIENLRLVANHP 70 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTT-------------T--HHHH-------HHHHHHHHHHHHHHH-G
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccC-------------ccccccchhhhhhHHHHHHHHHHHHHhccCc
Confidence 367899999999999999987765554444332200 0000000111123467778889999999999
Q ss_pred CCCCCCcccccCCCCCH----------HHHHHHHHHHHHHh-hhhhcchHHHhhhhHHHHHHHHHhHHHHHHHHHH----
Q 001607 510 QVGSSGLRSLQQSPLSM----------DEILMVLIGKTKIE-GEEALRKLVMALNGLAGIALIEKNLSQAVSLYKE---- 574 (1045)
Q Consensus 510 ~L~~~~~~~~~~~~~t~----------~elL~~Ll~~~~~e-~~~~~rkvlifsq~~a~L~ii~~~~~~a~~~y~~---- 574 (1045)
+|.-.-..+..-..+.+ -.+|..|++.+... -.+...+++|.++....+++||..+-.....|+.
T Consensus 71 ~LlvdH~mPk~ll~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~ 150 (297)
T PF11496_consen 71 SLLVDHYMPKQLLLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGE 150 (297)
T ss_dssp GGT--TT--S-S-STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS-
T ss_pred cccccccCccccccchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCC
Confidence 98644332211111222 23666676665221 1223368889999999999999876554333211
Q ss_pred -----HHHHH-------------H---HHhhc-----cCCCCCc------------CceeEeeCCcCCcchhhhhh-hhh
Q 001607 575 -----AMAVV-------------E---EHSED-----FRLDPLL------------NIHLHHNLTEILPMVANCAT-ELS 615 (1045)
Q Consensus 575 -----~l~~~-------------~---~~~~~-----f~~d~~~------------~~~~~~nl~~~np~~~~QA~-R~h 615 (1045)
..... . ..... +..+.+. .+.|-++- .+++..+.... |.+
T Consensus 151 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~-~~d~~~p~i~~lR~~ 229 (297)
T PF11496_consen 151 SLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDP-SFDTSLPSIEQLRTQ 229 (297)
T ss_dssp -S--S---S----------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SS-T--TTSHHHHHHH--
T ss_pred CCcCccccCCcccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecC-CCCCCChHHHHHHhh
Confidence 11100 0 00000 0111110 11222222 36666665555 555
Q ss_pred hcCCCCceEEEeccccCCccccchhHhhh
Q 001607 616 QNEQHFPGCSEKAFKIHSIETCDENARKC 644 (1045)
Q Consensus 616 riGq~~~v~~~r~~~~~t~ee~~~~~~k~ 644 (1045)
--.+ +.+-|.|++..+|+|-.+++..+.
T Consensus 230 ~~~~-~~~PiirLv~~nSiEHi~L~~~~~ 257 (297)
T PF11496_consen 230 NRRN-RLCPIIRLVPSNSIEHIELCFPKS 257 (297)
T ss_dssp ------S--EEEEEETTSHHHHHHHHTTT
T ss_pred cCCC-CCCcEEEEeeCCCHHHHHHHccCc
Confidence 4444 789999999999999998877553
No 86
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=95.19 E-value=0.15 Score=66.02 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=28.4
Q ss_pred hcCccEEEEehHHHHhhcccCCCCCccchhhhhhcccCCCccccccccccceEEeccccccCC
Q 001607 273 LVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 335 (1045)
Q Consensus 273 l~~~dVVItTY~~l~~d~~~~~~~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn 335 (1045)
...+|||||+|..+..+..... ..|. ....+|+||||++..
T Consensus 414 a~~AdivItNHa~L~~~~~~~~--------------------~ilp--~~~~lIiDEAH~L~d 454 (850)
T TIGR01407 414 AEQAQILITNHAYLITRLVDNP--------------------ELFP--SFRDLIIDEAHHLPD 454 (850)
T ss_pred HhcCCEEEecHHHHHHHhhccc--------------------ccCC--CCCEEEEECcchHHH
Confidence 4568899999999988753210 0121 236899999999964
No 87
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=95.10 E-value=0.11 Score=69.76 Aligned_cols=119 Identities=18% Similarity=0.155 Sum_probs=68.1
Q ss_pred CcEEEEeCchhH-HHHHHHHHH-----------hc-CCCCCeEEEEeCCCCCccccccccchhhh-cCccEEEEehHHHH
Q 001607 222 GATLIVCPAPIL-AQWDAEITR-----------HT-RPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLK 287 (1045)
Q Consensus 222 ~~tLIV~P~SLl-~qW~~Ei~k-----------~~-~~~~l~v~vy~G~~~~~~~~~~~~~~~~l-~~~dVVItTY~~l~ 287 (1045)
..+|+|+|.--+ .|=.++++. +. ....++|.+++|...... ....+ ...||+|||.+.+.
T Consensus 38 ~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~e------R~rll~~ppdILVTTPEsL~ 111 (1490)
T PRK09751 38 SRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQE------RSKLTRNPPDILITTPESLY 111 (1490)
T ss_pred CEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHH------HHHHhcCCCCEEEecHHHHH
Confidence 468999997544 333333332 11 113688999999754211 11111 35799999999987
Q ss_pred hhcccCCCCCccchhhhhhcccCCCccccccccccceEEeccccccCChH--HHHHHHHHHhc-----cCcEEEEeccCC
Q 001607 288 EDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-----AKHRWCITGTPI 360 (1045)
Q Consensus 288 ~d~~~~~~~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~--S~~~~al~~L~-----a~~Rw~LTGTPi 360 (1045)
..+... . ...|.. -..||+||+|.+.+.+ +.....+.+|. ...+|++|+|-
T Consensus 112 ~LLtsk-~------------------r~~L~~--Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI- 169 (1490)
T PRK09751 112 LMLTSR-A------------------RETLRG--VETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATV- 169 (1490)
T ss_pred HHHhhh-h------------------hhhhcc--CCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCCeEEEEEeeC-
Confidence 644210 0 011332 4579999999997542 33333343332 34689999995
Q ss_pred CCChhhhhh
Q 001607 361 QRKLDDLYG 369 (1045)
Q Consensus 361 qN~l~DL~~ 369 (1045)
. +++++-.
T Consensus 170 ~-n~eevA~ 177 (1490)
T PRK09751 170 R-SASDVAA 177 (1490)
T ss_pred C-CHHHHHH
Confidence 2 3555543
No 88
>PRK09694 helicase Cas3; Provisional
Probab=95.03 E-value=0.14 Score=65.54 Aligned_cols=75 Identities=15% Similarity=0.037 Sum_probs=42.7
Q ss_pred ccEEEEehHHHHhhcccCCCCCccchhhhhhcccCCCccccccccccceEEeccccccCChHHHHHH-HHHHhc--cCcE
Q 001607 276 ADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATE-MALRLY--AKHR 352 (1045)
Q Consensus 276 ~dVVItTY~~l~~d~~~~~~~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~-al~~L~--a~~R 352 (1045)
.+|+|+|.+.+-...-... ..+.| +..+.=.+||+||+|.+-...+.... .+..+. ....
T Consensus 411 api~V~TiDQlL~a~l~~k------h~~lR-----------~~~La~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~v 473 (878)
T PRK09694 411 GQIGVCTIDQVLISVLPVK------HRFIR-----------GFGLGRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSV 473 (878)
T ss_pred CCEEEcCHHHHHHHHHccc------hHHHH-----------HHhhccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcE
Confidence 6899999988765432100 00000 11223357999999999654444333 333332 3568
Q ss_pred EEEeccCCCCChhhh
Q 001607 353 WCITGTPIQRKLDDL 367 (1045)
Q Consensus 353 w~LTGTPiqN~l~DL 367 (1045)
++||+|+-..-..+|
T Consensus 474 IllSATLP~~~r~~L 488 (878)
T PRK09694 474 ILLSATLPATLKQKL 488 (878)
T ss_pred EEEeCCCCHHHHHHH
Confidence 999999855433333
No 89
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=95.01 E-value=0.02 Score=71.14 Aligned_cols=117 Identities=15% Similarity=0.153 Sum_probs=66.0
Q ss_pred cEEEEeCchhHH----HHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCc
Q 001607 223 ATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 298 (1045)
Q Consensus 223 ~tLIV~P~SLl~----qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~ 298 (1045)
.++||+|+..+. .|...+-+++ .+++.+..|..... .....-..||++.|...|.-|+-.....
T Consensus 99 ~V~VvTpt~~LA~qdae~~~~l~~~L---GLsv~~i~g~~~~~-------~r~~~y~~dIvyGT~~rlgfDyLrd~~~-- 166 (745)
T TIGR00963 99 GVHVVTVNDYLAQRDAEWMGQVYRFL---GLSVGLILSGMSPE-------ERREAYACDITYGTNNELGFDYLRDNMA-- 166 (745)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccC---CCeEEEEeCCCCHH-------HHHHhcCCCEEEECCCchhhHHHhcccc--
Confidence 589999998663 5666666665 58887777753311 1112224799999988775554221100
Q ss_pred cchhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHh--ccCcEEEEeccCCCCChh
Q 001607 299 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL--YAKHRWCITGTPIQRKLD 365 (1045)
Q Consensus 299 ~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L--~a~~Rw~LTGTPiqN~l~ 365 (1045)
.....+..-....+|+||+|++--.. +++..+.+= ....-+.+++||+...+.
T Consensus 167 -------------~~~~~~~~r~l~~aIIDEaDs~LIDe-aRtpLiisg~~~~~~~ly~~a~~i~r~L~ 221 (745)
T TIGR00963 167 -------------HSKEEKVQRPFHFAIIDEVDSILIDE-ARTPLIISGPAEKSTELYLQANRFAKALE 221 (745)
T ss_pred -------------cchhhhhccccceeEeecHHHHhHHh-hhhHHhhcCCCCCchHHHHHHHHHHHhhc
Confidence 00011333457889999999975322 222222211 123446667777776554
No 90
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.92 E-value=0.34 Score=51.66 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=22.5
Q ss_pred ccceEEeccccccCChHHHHHHHHHH-hccCcEEEEeccCCC
Q 001607 321 FWWRICLDEAQMVESNAAAATEMALR-LYAKHRWCITGTPIQ 361 (1045)
Q Consensus 321 ~w~rVIlDEAH~iKn~~S~~~~al~~-L~a~~Rw~LTGTPiq 361 (1045)
.|+.||+|||=.+.-+. ++.. ..+..+|+|-|=|-|
T Consensus 192 ~~d~vIvDEAsq~~e~~-----~l~~l~~~~~~~vlvGD~~Q 228 (236)
T PF13086_consen 192 KFDVVIVDEASQITEPE-----ALIPLSRAPKRIVLVGDPKQ 228 (236)
T ss_dssp --SEEEETTGGGS-HHH-----HHHHHTTTBSEEEEEE-TTS
T ss_pred cCCEEEEeCCCCcchHH-----HHHHHHHhCCEEEEECChhh
Confidence 79999999998874322 2222 344489999998766
No 91
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=94.73 E-value=0.072 Score=64.75 Aligned_cols=152 Identities=16% Similarity=0.202 Sum_probs=84.6
Q ss_pred CccEEEEehHHHHhhcccCCCCCccchhhhhhcccCCCcccccccc---cc-ceEEeccccccCC-------hHHHHHHH
Q 001607 275 GADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRI---FW-WRICLDEAQMVES-------NAAAATEM 343 (1045)
Q Consensus 275 ~~dVVItTY~~l~~d~~~~~~~~~~~~~~~r~~k~~~~~~s~L~~i---~w-~rVIlDEAH~iKn-------~~S~~~~a 343 (1045)
+-.|++.||..|..+... .+.+...|+. .|.++ .| .+||+||+|+.|| ..|+..++
T Consensus 368 krGViFaTYtaLIGEs~~-----~~~kyrtR~r--------QllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~t 434 (1300)
T KOG1513|consen 368 KRGVIFATYTALIGESQG-----KGGKYRTRFR--------QLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKT 434 (1300)
T ss_pred cceeEEEeeHhhhhhccc-----cCchHHHHHH--------HHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHh
Confidence 456999999999887532 1111111111 11111 12 3789999999999 34677777
Q ss_pred HHHhc----cCcEEEEeccCCCCChhhhhhcccccCCC------CCCChHHHHHHHcCCCcCCchhhHHHH--HHHHHHh
Q 001607 344 ALRLY----AKHRWCITGTPIQRKLDDLYGLLRFLKSS------PFSISRWWIEVIRDPYENGDVGAMEFT--HKFFKEI 411 (1045)
Q Consensus 344 l~~L~----a~~Rw~LTGTPiqN~l~DL~~LL~FL~p~------~~~~~~~f~~~~~~p~~~~~~~~~~~L--~~~l~~~ 411 (1045)
+..|+ --+.+--|+|--. |=-++....+.+ .|+++..|...+.+ .+..+++-. --.++..
T Consensus 435 VLdLQk~LP~ARVVYASATGAs----EPrNMaYM~RLGlWGegtaf~eF~eFi~AvEk----RGvGAMEIVAMDMK~rGm 506 (1300)
T KOG1513|consen 435 VLDLQKKLPNARVVYASATGAS----EPRNMAYMVRLGLWGEGTAFPEFEEFIHAVEK----RGVGAMEIVAMDMKLRGM 506 (1300)
T ss_pred HHHHHHhCCCceEEEeeccCCC----CcchhhhhhhhccccCCCcCccHHHHHHHHHh----cCCceeeeeehhhhhhhh
Confidence 76653 3344556666432 112222223333 35666666665543 222222211 1122222
Q ss_pred hhhcccccccccCCCCCceEEEEEecCCHHHHHHHHHHHHHHH
Q 001607 412 MCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCV 454 (1045)
Q Consensus 412 mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Q~~~Y~~i~~~~~ 454 (1045)
.+- .+|.+..-...+-.|+||++=++.|+...+-..
T Consensus 507 YiA-------RQLSFkgVsFrieEv~ls~eF~k~Yn~a~~LW~ 542 (1300)
T KOG1513|consen 507 YIA-------RQLSFKGVSFRIEEVPLSKEFRKVYNRAAELWA 542 (1300)
T ss_pred hhh-------hhccccCceEEEEecccCHHHHHHHHHHHHHHH
Confidence 222 256677778899999999999999997655433
No 92
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=93.96 E-value=0.27 Score=62.59 Aligned_cols=131 Identities=15% Similarity=0.018 Sum_probs=65.0
Q ss_pred CcEEEEeCc-hhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 222 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
...+.|.|. +++.+=.+.+..+...+......+||......... +.. ..-+.++++++.....-..... ..
T Consensus 247 ~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~----~~~--~~~~~~~~~ds~~~~~~~~~~~--~~ 318 (733)
T COG1203 247 SRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLE----PDQ--DILLTLTTNDSYKKLLLALIVV--TP 318 (733)
T ss_pred ceEEEEccHHHHHHHHHHHHHhhhcccccccccccccccchhhhc----ccc--ccceeEEecccccceecccccc--CH
Confidence 456777775 45678888888877322222222355533211100 000 1125666666655443221110 00
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCCh-HHHH-HHHHHHhc--cCcEEEEeccCCC
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-AAAA-TEMALRLY--AKHRWCITGTPIQ 361 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~-~S~~-~~al~~L~--a~~Rw~LTGTPiq 361 (1045)
-........+...+. +..+.-..||+||+|.+-.. .+.. ..++..+. ....+++|||+-+
T Consensus 319 ~~~~~~~~~~~~~~~-~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~ 382 (733)
T COG1203 319 IQILIFSVKGFKFEF-LALLLTSLVILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPP 382 (733)
T ss_pred hHhhhhhccccchHH-HHHHHhhchhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCH
Confidence 000001111122223 55566788999999998766 3333 33333443 5678999999643
No 93
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=93.82 E-value=0.41 Score=58.35 Aligned_cols=108 Identities=20% Similarity=0.211 Sum_probs=73.0
Q ss_pred EEEEeCch-hHHHHHHHHHHhcCCC-CCeEEEEeCCCCCccccccccchhhhc-CccEEEEehHHHHhhcccCCCCCccc
Q 001607 224 TLIVCPAP-ILAQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIMDISELV-GADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 224 tLIV~P~S-Ll~qW~~Ei~k~~~~~-~l~v~vy~G~~~~~~~~~~~~~~~~l~-~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
.||++|.- |..|=.+++.++.... .+++..+.|..... .+...+. ..||||.|-..+...+...
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~------~q~~~l~~~~~ivVaTPGRllD~i~~~------- 168 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIR------KQIEALKRGVDIVVATPGRLLDLIKRG------- 168 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHH------HHHHHHhcCCCEEEECccHHHHHHHcC-------
Confidence 99999986 5579999999988544 57776666653221 1122233 3899999999988665431
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCChH--HHHHHHHHHhcc-CcEEEEeccC
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTP 359 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~--S~~~~al~~L~a-~~Rw~LTGTP 359 (1045)
.|.--.-..+|+|||-++-+.. ......+..++. ...++.|+|-
T Consensus 169 ---------------~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~ 215 (513)
T COG0513 169 ---------------KLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATM 215 (513)
T ss_pred ---------------CcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCC
Confidence 1334456789999999987653 444455555654 5678889994
No 94
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=93.55 E-value=0.39 Score=61.04 Aligned_cols=104 Identities=15% Similarity=0.108 Sum_probs=61.8
Q ss_pred cEEEEeCchhH----HHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCc
Q 001607 223 ATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 298 (1045)
Q Consensus 223 ~tLIV~P~SLl----~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~ 298 (1045)
+++||+|+--+ .+|...+.+++ ++++....|..... ...... ..|||+.|-..|.-|+-......
T Consensus 137 ~v~IVTpTrELA~Qdae~m~~L~k~l---GLsV~~i~GG~~~~------eq~~~y-~~DIVygTPgRLgfDyLrd~~~~- 205 (970)
T PRK12899 137 PVHLVTVNDYLAQRDCEWVGSVLRWL---GLTTGVLVSGSPLE------KRKEIY-QCDVVYGTASEFGFDYLRDNSIA- 205 (970)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhc---CCeEEEEeCCCCHH------HHHHHc-CCCEEEECCChhHHHHhhCCCCC-
Confidence 47889997644 47888888887 48886666543211 011122 48999999888844432211000
Q ss_pred cchhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCC
Q 001607 299 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 361 (1045)
Q Consensus 299 ~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiq 361 (1045)
.....+....+..+|||||..+-- -.|+--+++||.+-.
T Consensus 206 -------------~~~~~~vqr~~~~~IIDEADsmLi-----------DEArTPLIISg~~~~ 244 (970)
T PRK12899 206 -------------TRKEEQVGRGFYFAIIDEVDSILI-----------DEARTPLIISGPGEK 244 (970)
T ss_pred -------------cCHHHhhcccccEEEEechhhhhh-----------hccCCceeeeCCCcc
Confidence 000112344688999999987632 235566788887643
No 95
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=93.50 E-value=0.46 Score=58.89 Aligned_cols=43 Identities=23% Similarity=0.222 Sum_probs=29.3
Q ss_pred hcCccEEEEehHHHHhhcccCCCCCccchhhhhhcccCCCccccccccccceEEeccccccCChH
Q 001607 273 LVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 337 (1045)
Q Consensus 273 l~~~dVVItTY~~l~~d~~~~~~~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~ 337 (1045)
...+|||||++..|..+.... . ..|. ..+.||+||||.+....
T Consensus 180 a~~AdivItNHalL~~~~~~~----------------~----~iLP--~~~~lIiDEAH~L~d~A 222 (636)
T TIGR03117 180 ARRCRILFCTHAMLGLAFRDK----------------W----GLLP--QPDILIVDEAHLFEQNI 222 (636)
T ss_pred cccCCEEEECHHHHHHHhhhh----------------c----CCCC--CCCEEEEeCCcchHHHH
Confidence 467899999999988753110 0 1122 36899999999996543
No 96
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=93.46 E-value=0.6 Score=57.90 Aligned_cols=116 Identities=17% Similarity=0.061 Sum_probs=65.1
Q ss_pred CcEEEEeCchhHH----HHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCC
Q 001607 222 GATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 297 (1045)
Q Consensus 222 ~~tLIV~P~SLl~----qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~ 297 (1045)
..++||+|+--+. +|...+-++. .+++.+..|..... .....-..|||+.|-..|.-|+-.+.-..
T Consensus 145 ~~v~VvTptreLA~qdae~~~~l~~~l---Glsv~~i~gg~~~~-------~r~~~y~~dIvygT~~e~~FDyLrd~~~~ 214 (656)
T PRK12898 145 LPVHVITVNDYLAERDAELMRPLYEAL---GLTVGCVVEDQSPD-------ERRAAYGADITYCTNKELVFDYLRDRLAL 214 (656)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHHhhc---CCEEEEEeCCCCHH-------HHHHHcCCCEEEECCCchhhhhccccccc
Confidence 3689999997663 6777777776 58887766653210 12223467999999888777654332111
Q ss_pred cc--chh---hhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccC
Q 001607 298 EG--DRR---FMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTP 359 (1045)
Q Consensus 298 ~~--~~~---~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTP 359 (1045)
.+ +.. ......... ....+....++++||||+..+-=. .|..-+++||.|
T Consensus 215 ~~~~~~~~~~~~~l~~~~~-~~~~~v~r~~~~aIvDEvDSiLiD-----------eartpliis~~~ 269 (656)
T PRK12898 215 GQRASDARLALESLHGRSS-RSTQLLLRGLHFAIVDEADSVLID-----------EARTPLIISAPA 269 (656)
T ss_pred cccccchhhhhhhhccccC-chhhhcccccceeEeecccceeec-----------cCCCceEEECCC
Confidence 00 000 000000000 112233457889999999876311 245567888854
No 97
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=93.25 E-value=0.21 Score=62.31 Aligned_cols=97 Identities=16% Similarity=0.201 Sum_probs=59.5
Q ss_pred EEEEeCc-hhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccchh
Q 001607 224 TLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRR 302 (1045)
Q Consensus 224 tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~~ 302 (1045)
++--.|- .|-.|=-++|+.-+ ++.. +..|.- .-...+..+|+|-+.|++.+....+
T Consensus 343 ~iYTSPIKALSNQKfRDFk~tF--~Dvg--LlTGDv------------qinPeAsCLIMTTEILRsMLYrgad------- 399 (1248)
T KOG0947|consen 343 TIYTSPIKALSNQKFRDFKETF--GDVG--LLTGDV------------QINPEASCLIMTTEILRSMLYRGAD------- 399 (1248)
T ss_pred eEecchhhhhccchHHHHHHhc--cccc--eeecce------------eeCCCcceEeehHHHHHHHHhcccc-------
Confidence 3344453 44457778888877 3443 556652 2234677999999999998764322
Q ss_pred hhhhcccCCCccccccccccceEEeccccccCChH-HHHHHHHH-Hhcc-CcEEEEecc
Q 001607 303 FMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMAL-RLYA-KHRWCITGT 358 (1045)
Q Consensus 303 ~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~-S~~~~al~-~L~a-~~Rw~LTGT 358 (1045)
.+..+. .||+||.|+|-+.. .-.+.-+- .|+. ..-++||+|
T Consensus 400 -------------liRDvE--~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSAT 443 (1248)
T KOG0947|consen 400 -------------LIRDVE--FVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSAT 443 (1248)
T ss_pred -------------hhhccc--eEEEeeeeecccccccccceeeeeeccccceEEEEecc
Confidence 244444 49999999996543 22222222 2332 346889999
No 98
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=92.97 E-value=0.39 Score=61.50 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=30.6
Q ss_pred hhhhh-hhhhcCCCCceEEEeccccCCccccchhHhhhhccccccCCCCC
Q 001607 608 ANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFT 656 (1045)
Q Consensus 608 ~~QA~-R~hriGq~~~v~~~r~~~~~t~ee~~~~~~k~k~~~~~~~~~~~ 656 (1045)
..+|. |+=|-|..+++..|||.++...+ .-+....+|...++++
T Consensus 311 kasa~QR~GRAGR~~~G~cyrL~t~~~~~-----~l~~~~~PEI~r~~L~ 355 (819)
T TIGR01970 311 QASATQRAGRAGRLEPGVCYRLWSEEQHQ-----RLPAQDEPEILQADLS 355 (819)
T ss_pred HHHHHhhhhhcCCCCCCEEEEeCCHHHHH-----hhhcCCCcceeccCcH
Confidence 34566 99999999999999999975432 2244456666655554
No 99
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=92.79 E-value=1.7 Score=49.03 Aligned_cols=40 Identities=13% Similarity=0.122 Sum_probs=26.1
Q ss_pred ccceEEeccccccC--ChHHHHHHHHHH-h-ccCcEEEEeccCCC
Q 001607 321 FWWRICLDEAQMVE--SNAAAATEMALR-L-YAKHRWCITGTPIQ 361 (1045)
Q Consensus 321 ~w~rVIlDEAH~iK--n~~S~~~~al~~-L-~a~~Rw~LTGTPiq 361 (1045)
.||.+|+||..-.- +.. ....++.. . .....+.||+||-.
T Consensus 202 aFD~liIDEVDAFP~~~d~-~L~~Av~~ark~~g~~IylTATp~k 245 (441)
T COG4098 202 AFDLLIIDEVDAFPFSDDQ-SLQYAVKKARKKEGATIYLTATPTK 245 (441)
T ss_pred hccEEEEeccccccccCCH-HHHHHHHHhhcccCceEEEecCChH
Confidence 48999999998742 222 23334433 2 24568999999974
No 100
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.58 E-value=0.58 Score=53.32 Aligned_cols=111 Identities=13% Similarity=0.099 Sum_probs=76.0
Q ss_pred cEEEEeCch-hHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccch
Q 001607 223 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 301 (1045)
Q Consensus 223 ~tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~ 301 (1045)
..||++|.- |..|-...++.....-++++.+..|..... .....-..+.+|+|.|-..|...+.....
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~-----~q~~~L~kkPhilVaTPGrL~dhl~~Tkg------ 199 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMM-----LQANQLSKKPHILVATPGRLWDHLENTKG------ 199 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHH-----HHHHHhhcCCCEEEeCcHHHHHHHHhccC------
Confidence 479999986 456777888888655578998888875421 12233445688999999999887643211
Q ss_pred hhhhhcccCCCccccccccccceEEeccccccCChH--HHHHHHHHHhccCcE-EEEeccC
Q 001607 302 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYAKHR-WCITGTP 359 (1045)
Q Consensus 302 ~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~--S~~~~al~~L~a~~R-w~LTGTP 359 (1045)
+.--.-..+|+|||.++-|.+ -..-+.+..++..++ ++.|+|-
T Consensus 200 ---------------f~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATM 245 (476)
T KOG0330|consen 200 ---------------FSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATM 245 (476)
T ss_pred ---------------ccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeec
Confidence 111234568999999998765 556677777876554 6677774
No 101
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=92.45 E-value=0.32 Score=61.78 Aligned_cols=101 Identities=21% Similarity=0.126 Sum_probs=60.4
Q ss_pred cEEEEeCchhH----HHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCc
Q 001607 223 ATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 298 (1045)
Q Consensus 223 ~tLIV~P~SLl----~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~ 298 (1045)
.++||+|+--+ .+|...+-+++ .+++.+..|..... .....-..||++.|-..|.-|+-......
T Consensus 125 ~V~VvTpn~yLA~qd~e~m~~l~~~l---GLtv~~i~gg~~~~-------~r~~~y~~dIvygT~grlgfDyLrd~~~~- 193 (896)
T PRK13104 125 GVHIVTVNDYLAKRDSQWMKPIYEFL---GLTVGVIYPDMSHK-------EKQEAYKADIVYGTNNEYGFDYLRDNMAF- 193 (896)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccc---CceEEEEeCCCCHH-------HHHHHhCCCEEEECChhhhHHHHhcCCcc-
Confidence 58999998754 36888887777 58887777653211 11122257999999998855442211000
Q ss_pred cchhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccC
Q 001607 299 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTP 359 (1045)
Q Consensus 299 ~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTP 359 (1045)
.......-...++|||||+.+--. .|+.-+++||.|
T Consensus 194 --------------~~~~~v~r~l~~~IvDEaDsiLID-----------eArtPLIISg~~ 229 (896)
T PRK13104 194 --------------SLTDKVQRELNFAIVDEVDSILID-----------EARTPLIISGAA 229 (896)
T ss_pred --------------chHhhhccccceEEeccHhhhhhh-----------ccCCceeeeCCC
Confidence 001122346789999999987321 244556777754
No 102
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=92.44 E-value=0.99 Score=57.96 Aligned_cols=43 Identities=16% Similarity=0.160 Sum_probs=29.4
Q ss_pred hhhh-hhhhcCCCCceEEEeccccCCccccchhHhhhhccccccCCCCC
Q 001607 609 NCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFT 656 (1045)
Q Consensus 609 ~QA~-R~hriGq~~~v~~~r~~~~~t~ee~~~~~~k~k~~~~~~~~~~~ 656 (1045)
.+|. |+=|-|...++..|||.++...+. -...-++|...++++
T Consensus 315 asa~QR~GRaGR~~~G~cyrL~t~~~~~~-----l~~~~~PEI~r~dL~ 358 (812)
T PRK11664 315 ASMTQRAGRAGRLEPGICLHLYSKEQAER-----AAAQSEPEILHSDLS 358 (812)
T ss_pred hhhhhhccccCCCCCcEEEEecCHHHHhh-----CccCCCCceeccchH
Confidence 4566 999999999999999999865432 123445555554444
No 103
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=92.43 E-value=0.3 Score=61.72 Aligned_cols=87 Identities=17% Similarity=0.278 Sum_probs=59.9
Q ss_pred CcEEEEeCch-hHHHHHHHHHHhcCCCC-CeEEE-EeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCc
Q 001607 222 GATLIVCPAP-ILAQWDAEITRHTRPGS-LKTCI-YEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 298 (1045)
Q Consensus 222 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~~~-l~v~v-y~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~ 298 (1045)
+.++||+|+. |+.|=.+-|+++..... +++.+ |||.-..+.. ......-..++|||+|||-..+.+.++
T Consensus 126 kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ek-ee~le~i~~gdfdIlitTs~FL~k~~e------- 197 (1187)
T COG1110 126 KRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEK-EEALERIESGDFDILITTSQFLSKRFE------- 197 (1187)
T ss_pred CeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHH-HHHHHHHhcCCccEEEEeHHHHHhhHH-------
Confidence 5789999986 55799999999985322 55544 8887322110 111222334679999999999998764
Q ss_pred cchhhhhhcccCCCccccccccccceEEecccccc
Q 001607 299 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 333 (1045)
Q Consensus 299 ~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~i 333 (1045)
.|.+.+|+.|++|-+..+
T Consensus 198 -----------------~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 198 -----------------ELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred -----------------HhcccCCCEEEEccHHHH
Confidence 366788999999987763
No 104
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=92.34 E-value=0.34 Score=58.33 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=27.3
Q ss_pred CCcEEEEeCchh-HHHHHHHHHHhcCCCCCeEEEEeCCCC
Q 001607 221 TGATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARN 259 (1045)
Q Consensus 221 ~~~tLIV~P~SL-l~qW~~Ei~k~~~~~~l~v~vy~G~~~ 259 (1045)
.+|+||++|+.+ ++|-...|.+- .|+|+.....++
T Consensus 454 ~~~VLvcApSNiAVDqLaeKIh~t----gLKVvRl~aksR 489 (935)
T KOG1802|consen 454 AGPVLVCAPSNIAVDQLAEKIHKT----GLKVVRLCAKSR 489 (935)
T ss_pred CCceEEEcccchhHHHHHHHHHhc----CceEeeeehhhh
Confidence 379999999987 68988888764 489888766544
No 105
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=92.12 E-value=1.1 Score=57.75 Aligned_cols=99 Identities=16% Similarity=0.163 Sum_probs=61.1
Q ss_pred EEEEeC-chhHHHHHHHHHHhcCCCCC--eEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 224 TLIVCP-APILAQWDAEITRHTRPGSL--KTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 224 tLIV~P-~SLl~qW~~Ei~k~~~~~~l--~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
+.-..| ++|..|=.+++..-+ +.+ -+-++.|.. .-..++.++++|-+.|++.+.....
T Consensus 165 viYTsPIKALsNQKyrdl~~~f--gdv~~~vGL~TGDv------------~IN~~A~clvMTTEILRnMlyrg~~----- 225 (1041)
T COG4581 165 VIYTSPIKALSNQKYRDLLAKF--GDVADMVGLMTGDV------------SINPDAPCLVMTTEILRNMLYRGSE----- 225 (1041)
T ss_pred eEeccchhhhhhhHHHHHHHHh--hhhhhhccceecce------------eeCCCCceEEeeHHHHHHHhccCcc-----
Confidence 444556 466678778877666 322 235566652 2234567888888999998754211
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCChH-HHHHHHHH-Hhc-cCcEEEEecc
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMAL-RLY-AKHRWCITGT 358 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~-S~~~~al~-~L~-a~~Rw~LTGT 358 (1045)
.+.. -..||+||.|.|.... .-..+-+- .+. ...-++||+|
T Consensus 226 ---------------~~~~--i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSAT 269 (1041)
T COG4581 226 ---------------SLRD--IEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSAT 269 (1041)
T ss_pred ---------------cccc--cceEEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeCC
Confidence 1333 3459999999998765 33333332 333 3477899999
No 106
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.73 E-value=0.82 Score=53.76 Aligned_cols=122 Identities=17% Similarity=0.180 Sum_probs=76.7
Q ss_pred CCCCcEEEEeCchh----HHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCC
Q 001607 219 VATGATLIVCPAPI----LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDS 294 (1045)
Q Consensus 219 ~~~~~tLIV~P~SL----l~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~ 294 (1045)
.++-++||+||.-= +++-...+..|+ ++.|....|.-..+. ....--...||||.|-..|..++....
T Consensus 250 ~~~TRVLVL~PTRELaiQv~sV~~qlaqFt---~I~~~L~vGGL~lk~-----QE~~LRs~PDIVIATPGRlIDHlrNs~ 321 (691)
T KOG0338|consen 250 VAATRVLVLVPTRELAIQVHSVTKQLAQFT---DITVGLAVGGLDLKA-----QEAVLRSRPDIVIATPGRLIDHLRNSP 321 (691)
T ss_pred CcceeEEEEeccHHHHHHHHHHHHHHHhhc---cceeeeeecCccHHH-----HHHHHhhCCCEEEecchhHHHHhccCC
Confidence 35568999999863 356677888888 688888777633211 112223568999999999988775322
Q ss_pred CCCccchhhhhhcccCCCccccccccccceEEeccccccCChH--HHHHHHHHHh-ccCcEEEEeccCCCCChhhhhhc
Q 001607 295 DRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRL-YAKHRWCITGTPIQRKLDDLYGL 370 (1045)
Q Consensus 295 ~~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~--S~~~~al~~L-~a~~Rw~LTGTPiqN~l~DL~~L 370 (1045)
. +.--...++|+|||.++-... ......+... +.+..++.|+|- ...+.||.++
T Consensus 322 s---------------------f~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATM-teeVkdL~sl 378 (691)
T KOG0338|consen 322 S---------------------FNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATM-TEEVKDLASL 378 (691)
T ss_pred C---------------------ccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhh-HHHHHHHHHh
Confidence 1 222235679999999974321 2223333332 234568899994 3456777664
No 107
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=91.58 E-value=0.26 Score=60.04 Aligned_cols=132 Identities=14% Similarity=0.169 Sum_probs=84.2
Q ss_pred CCCcEEEEeCc-hhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCc
Q 001607 220 ATGATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 298 (1045)
Q Consensus 220 ~~~~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~ 298 (1045)
..|.||||.|. ||+..=.+.+... .+++...++.-... ...........+..+++..+-+.+....-
T Consensus 56 ~~G~TLVVSPLiSLM~DQV~~l~~~----Gi~A~~lnS~l~~~-e~~~v~~~l~~g~~klLyisPErl~~~~f------- 123 (590)
T COG0514 56 LEGLTLVVSPLISLMKDQVDQLEAA----GIRAAYLNSTLSRE-ERQQVLNQLKSGQLKLLYISPERLMSPRF------- 123 (590)
T ss_pred cCCCEEEECchHHHHHHHHHHHHHc----CceeehhhcccCHH-HHHHHHHHHhcCceeEEEECchhhcChHH-------
Confidence 46899999996 5665445555543 36666666652211 01111222333558899999998877521
Q ss_pred cchhhhhhcccCCCccccccccccceEEeccccccCChH-------HHHHHHHHHhccCcEEEEeccCCCCChhhhhhcc
Q 001607 299 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-------AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLL 371 (1045)
Q Consensus 299 ~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~-------S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~LL 371 (1045)
...|......++++||||.+-... .........+.-.-+++||+|--+.-..|+...|
T Consensus 124 ---------------~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L 188 (590)
T COG0514 124 ---------------LELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQL 188 (590)
T ss_pred ---------------HHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHh
Confidence 123557788899999999986442 2333333444555789999998888888888887
Q ss_pred cccCCCC
Q 001607 372 RFLKSSP 378 (1045)
Q Consensus 372 ~FL~p~~ 378 (1045)
..-.+..
T Consensus 189 ~l~~~~~ 195 (590)
T COG0514 189 GLQDANI 195 (590)
T ss_pred cCCCcce
Confidence 7665543
No 108
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=91.52 E-value=0.067 Score=43.53 Aligned_cols=31 Identities=39% Similarity=1.022 Sum_probs=24.7
Q ss_pred hcccccccccccccccccccccccccccccccCCC
Q 001607 140 ICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPR 174 (1045)
Q Consensus 140 ~c~~~~~~~~~~~~~v~c~~c~~w~h~~cv~~~~~ 174 (1045)
+|+.. ...+.+|+|+.|+.|.|..|++....
T Consensus 4 vC~~~----~~~~~~i~C~~C~~~~H~~C~~~~~~ 34 (51)
T PF00628_consen 4 VCGQS----DDDGDMIQCDSCNRWYHQECVGPPEK 34 (51)
T ss_dssp TTTSS----CTTSSEEEBSTTSCEEETTTSTSSHS
T ss_pred CCCCc----CCCCCeEEcCCCChhhCcccCCCChh
Confidence 56662 23678999999999999999987653
No 109
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.33 E-value=0.8 Score=54.15 Aligned_cols=86 Identities=21% Similarity=0.212 Sum_probs=58.4
Q ss_pred CcEEEEeCch-hHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 222 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
...||++|.. |+.|=.+|.+|+.-...++..+.+|....+. ....-...+||+++|-..|..-+....
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~-----q~~~~~~gcdIlvaTpGrL~d~~e~g~------ 221 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGA-----QLRFIKRGCDILVATPGRLKDLIERGK------ 221 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhh-----hhhhhccCccEEEecCchhhhhhhcce------
Confidence 4689999985 7799999999998655677766665533221 122334679999999999877553210
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccC
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 334 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iK 334 (1045)
-.|..+. ++|||||.++-
T Consensus 222 --------------i~l~~~k--~~vLDEADrMl 239 (482)
T KOG0335|consen 222 --------------ISLDNCK--FLVLDEADRML 239 (482)
T ss_pred --------------eehhhCc--EEEecchHHhh
Confidence 0133333 89999999874
No 110
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=90.60 E-value=0.76 Score=54.48 Aligned_cols=119 Identities=13% Similarity=0.181 Sum_probs=74.2
Q ss_pred cEEEEeCchh-HHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccch
Q 001607 223 ATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 301 (1045)
Q Consensus 223 ~tLIV~P~SL-l~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~ 301 (1045)
..|||.|.-= ..|--+-+.+....-.+..-.+-|.... ..........+|+|+|-..|-.+.+...
T Consensus 143 GalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~------k~E~eRi~~mNILVCTPGRLLQHmde~~------- 209 (758)
T KOG0343|consen 143 GALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDV------KFELERISQMNILVCTPGRLLQHMDENP------- 209 (758)
T ss_pred eeEEecchHHHHHHHHHHHHHHhhccccccceeecCchh------HHHHHhhhcCCeEEechHHHHHHhhhcC-------
Confidence 5799999864 4565555544332224555445554332 2234556778999999999998876522
Q ss_pred hhhhhcccCCCccccccccccceEEeccccccCChH--HHHHHHHHHhc-cCcEEEEeccCCCCChhhhhh
Q 001607 302 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTPIQRKLDDLYG 369 (1045)
Q Consensus 302 ~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~--S~~~~al~~L~-a~~Rw~LTGTPiqN~l~DL~~ 369 (1045)
.+..-.-.++|||||.++-... ...-..+..|+ .+..++.|+||..+ +.||.-
T Consensus 210 --------------~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~s-vkdLaR 265 (758)
T KOG0343|consen 210 --------------NFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKS-VKDLAR 265 (758)
T ss_pred --------------CCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchh-HHHHHH
Confidence 1444456789999999975433 22223344554 35678999998654 556544
No 111
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=89.99 E-value=0.69 Score=58.75 Aligned_cols=101 Identities=17% Similarity=0.099 Sum_probs=62.1
Q ss_pred CcEEEEeCchhHH----HHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCC
Q 001607 222 GATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 297 (1045)
Q Consensus 222 ~~tLIV~P~SLl~----qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~ 297 (1045)
..+-||+|+-.+. +|...+-+++ .++|-+..+..... .....-.+||++.|...|.-|+-.+.-..
T Consensus 124 ~~VhvvT~ndyLA~RD~e~m~~l~~~l---Gl~v~~i~~~~~~~-------err~~Y~~dI~YGT~~e~gFDYLrD~~~~ 193 (913)
T PRK13103 124 KGVHVVTVNDYLARRDANWMRPLYEFL---GLSVGIVTPFQPPE-------EKRAAYAADITYGTNNEFGFDYLRDNMAF 193 (913)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhccc---CCEEEEECCCCCHH-------HHHHHhcCCEEEEcccccccchhhcccee
Confidence 4688899988763 6777777776 68888887653211 11223348999999988755442211000
Q ss_pred ccchhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEecc
Q 001607 298 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGT 358 (1045)
Q Consensus 298 ~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGT 358 (1045)
.........++++|+||+|.+-=. .|+.-+++||.
T Consensus 194 ---------------~~~~~vqr~l~~aIVDEvDsiLID-----------EArtPLIISg~ 228 (913)
T PRK13103 194 ---------------SLDDKFQRELNFAVIDEVDSILID-----------EARTPLIISGQ 228 (913)
T ss_pred ---------------chhhhcccccceeEechhhheecc-----------ccCCceeecCC
Confidence 001233456889999999987321 24445677775
No 112
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=89.40 E-value=1.1 Score=57.73 Aligned_cols=115 Identities=11% Similarity=0.224 Sum_probs=68.1
Q ss_pred CcEEEEeC-chhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHH---HHhhcccCCCCC
Q 001607 222 GATLIVCP-APILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDV---LKEDLSHDSDRH 297 (1045)
Q Consensus 222 ~~tLIV~P-~SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~---l~~d~~~~~~~~ 297 (1045)
....-|+| .+|+..|...|.++..+=.++|.-..|.... ....+....|+++|-+. +.+.
T Consensus 365 fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l--------~~~qieeTqVIV~TPEK~DiITRk-------- 428 (1674)
T KOG0951|consen 365 FKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQL--------GKEQIEETQVIVTTPEKWDIITRK-------- 428 (1674)
T ss_pred ceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccc--------hhhhhhcceeEEeccchhhhhhcc--------
Confidence 35667788 5889999999999996555666656665332 23445566688887543 3322
Q ss_pred ccchhhhhhcccCCCccccccccccceEEecccccc---CChH--HHHHHHHHHhc----cCcEEEEeccCCCCChhhhh
Q 001607 298 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV---ESNA--AAATEMALRLY----AKHRWCITGTPIQRKLDDLY 368 (1045)
Q Consensus 298 ~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~i---Kn~~--S~~~~al~~L~----a~~Rw~LTGTPiqN~l~DL~ 368 (1045)
++++.. .--...+|+||.|++ +++. |-.++..++.. ..+-..||+| ++| .+|.-
T Consensus 429 ~gdraY---------------~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSAT-LPN-y~DV~ 491 (1674)
T KOG0951|consen 429 SGDRAY---------------EQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSAT-LPN-YEDVA 491 (1674)
T ss_pred cCchhH---------------HHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCceeeeeccc-CCc-hhhhH
Confidence 111110 012456899999999 4333 44445555442 3445789999 333 34444
Q ss_pred h
Q 001607 369 G 369 (1045)
Q Consensus 369 ~ 369 (1045)
+
T Consensus 492 ~ 492 (1674)
T KOG0951|consen 492 S 492 (1674)
T ss_pred H
Confidence 4
No 113
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=88.66 E-value=2.6 Score=56.05 Aligned_cols=62 Identities=18% Similarity=0.059 Sum_probs=39.3
Q ss_pred CccEEEEehHHHHhhcccCCCCCccchhhhhhcccCCCccccccccccceEEecccc-ccCChHHHHHHHHHHh----cc
Q 001607 275 GADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQ-MVESNAAAATEMALRL----YA 349 (1045)
Q Consensus 275 ~~dVVItTY~~l~~d~~~~~~~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH-~iKn~~S~~~~al~~L----~a 349 (1045)
...|+++|...|...+... ++ --.++.||||||| +.-|..-... .++.+ +.
T Consensus 163 ~t~I~v~TpG~LL~~l~~d----------------------~~-Ls~~~~IIIDEAHERsLn~DfLLg-~Lk~lL~~rpd 218 (1294)
T PRK11131 163 NTMVKLMTDGILLAEIQQD----------------------RL-LMQYDTIIIDEAHERSLNIDFILG-YLKELLPRRPD 218 (1294)
T ss_pred CCCEEEEChHHHHHHHhcC----------------------Cc-cccCcEEEecCccccccccchHHH-HHHHhhhcCCC
Confidence 4679999999998876421 11 2357889999999 4555432221 23332 22
Q ss_pred CcEEEEeccCC
Q 001607 350 KHRWCITGTPI 360 (1045)
Q Consensus 350 ~~Rw~LTGTPi 360 (1045)
...+++|+|.-
T Consensus 219 lKvILmSATid 229 (1294)
T PRK11131 219 LKVIITSATID 229 (1294)
T ss_pred ceEEEeeCCCC
Confidence 45789999973
No 114
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=88.64 E-value=1.6 Score=55.60 Aligned_cols=110 Identities=16% Similarity=0.139 Sum_probs=66.1
Q ss_pred CcEEEEeCchhH----HHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCC
Q 001607 222 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 297 (1045)
Q Consensus 222 ~~tLIV~P~SLl----~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~ 297 (1045)
..+.||+|+--+ ..|...+-+|+ ++.|-+..|.... ......-.+||+..|-..|.-|+-...-.
T Consensus 124 ~~VhIvT~ndyLA~RD~e~m~~l~~~l---Glsv~~i~~~~~~-------~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~- 192 (908)
T PRK13107 124 KGVHVITVNDYLARRDAENNRPLFEFL---GLTVGINVAGLGQ-------QEKKAAYNADITYGTNNEFGFDYLRDNMA- 192 (908)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHHhc---CCeEEEecCCCCH-------HHHHhcCCCCeEEeCCCcccchhhhccCc-
Confidence 358999998754 47999999998 6888766554221 01111125799999987775554321100
Q ss_pred ccchhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCChhhhhh
Q 001607 298 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYG 369 (1045)
Q Consensus 298 ~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~ 369 (1045)
..+..+....+..+|+||+..+--. .|+.-+++||.+ ... .++|.
T Consensus 193 --------------~~~~~~vqr~~~~aIvDEvDsiLiD-----------EArtPLIISg~~-~~~-~~~y~ 237 (908)
T PRK13107 193 --------------FSPQERVQRPLHYALIDEVDSILID-----------EARTPLIISGAA-EDS-SELYI 237 (908)
T ss_pred --------------cchhhhhccccceeeecchhhhccc-----------cCCCceeecCCC-ccc-hHHHH
Confidence 0011233456789999999887433 245567888854 332 34444
No 115
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=88.08 E-value=1.7 Score=54.36 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=19.0
Q ss_pred CceeecCCCCcHHHHHHHHHHhc
Q 001607 82 GGILADEMGLGKTVELLACIFAH 104 (1045)
Q Consensus 82 GGILADEMGLGKTvq~LalI~~~ 104 (1045)
.|+|-+-.|.|||+..|.-.++.
T Consensus 42 ~~llESPTGTGKSLsLLCS~LAW 64 (945)
T KOG1132|consen 42 NGLLESPTGTGKSLSLLCSTLAW 64 (945)
T ss_pred hhhccCCCCCCccHHHHHHHHHH
Confidence 58888899999999988766654
No 116
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=87.46 E-value=1.6 Score=55.58 Aligned_cols=101 Identities=17% Similarity=0.121 Sum_probs=60.6
Q ss_pred cEEEEeCchhHH----HHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCc
Q 001607 223 ATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 298 (1045)
Q Consensus 223 ~tLIV~P~SLl~----qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~ 298 (1045)
.+-||+|+..+. +|...+-+++ .+++.+..|..... .....-..||++.|...|.-|+-......
T Consensus 124 ~V~IvTpn~yLA~rd~e~~~~l~~~L---Glsv~~i~~~~~~~-------er~~~y~~dI~ygT~~elgfDyLrd~~~~- 192 (830)
T PRK12904 124 GVHVVTVNDYLAKRDAEWMGPLYEFL---GLSVGVILSGMSPE-------ERREAYAADITYGTNNEFGFDYLRDNMVF- 192 (830)
T ss_pred CEEEEecCHHHHHHHHHHHHHHHhhc---CCeEEEEcCCCCHH-------HHHHhcCCCeEEECCcchhhhhhhccccc-
Confidence 356999988663 5777777777 68888877753221 11111248999999988866543211100
Q ss_pred cchhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccC
Q 001607 299 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTP 359 (1045)
Q Consensus 299 ~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTP 359 (1045)
....+..-.+.++|||||..+-=. .|+.-+++||.+
T Consensus 193 --------------~~~~~~~r~~~~aIvDEaDsiLID-----------eArtpLiiSg~~ 228 (830)
T PRK12904 193 --------------SLEERVQRGLNYAIVDEVDSILID-----------EARTPLIISGPA 228 (830)
T ss_pred --------------chhhhcccccceEEEechhhheec-----------cCCCceeeECCC
Confidence 011233446788999999876311 234456777764
No 117
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=87.28 E-value=1.4 Score=54.96 Aligned_cols=123 Identities=12% Similarity=0.081 Sum_probs=65.3
Q ss_pred CcEEEEeCchhHH----HHHHHHHHhc-----CCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhh---
Q 001607 222 GATLIVCPAPILA----QWDAEITRHT-----RPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKED--- 289 (1045)
Q Consensus 222 ~~tLIV~P~SLl~----qW~~Ei~k~~-----~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d--- 289 (1045)
..++||||+..+. +=-+++..|+ ..-.+..++|..... ...........|+|.+.+.+.++
T Consensus 105 ~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~-------~~~~~~~~~~~vLl~~~~Afnk~~in 177 (985)
T COG3587 105 FKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIE-------KFKFKSNNKPCVLLIFVSAFNKEEIN 177 (985)
T ss_pred eeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHH-------HHhhccCCCceEEEEehhhhcccccc
Confidence 3689999975442 2234444444 222466666642211 01112223455888888888776
Q ss_pred cccCCCCCccchhhhhhcccCCCcccccccc--ccceEEeccccccCChHHHHHHHHHHhccCcEEEEecc
Q 001607 290 LSHDSDRHEGDRRFMRFQKRYPVIPTLLTRI--FWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGT 358 (1045)
Q Consensus 290 ~~~~~~~~~~~~~~~r~~k~~~~~~s~L~~i--~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGT 358 (1045)
....... .+..........+|...+ .=-.||+||-|++... .+++.++..+++..-+=.++|
T Consensus 178 an~iN~~------s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~-~k~~~~i~~l~pl~ilRfgAT 241 (985)
T COG3587 178 ANMINSE------SMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD-DKTYGAIKQLNPLLILRFGAT 241 (985)
T ss_pred ccccchh------hhcccCccccccCHHHHHHhcCCEEEecChhhcccc-hHHHHHHHhhCceEEEEeccc
Confidence 2111000 000000000001111111 1236999999999865 688899999998887777777
No 118
>PRK14873 primosome assembly protein PriA; Provisional
Probab=86.56 E-value=2 Score=53.95 Aligned_cols=107 Identities=8% Similarity=-0.058 Sum_probs=64.4
Q ss_pred CcEEEEeCc-hhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 222 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
+.+||++|. ++..|+..-++..+ +.-.+.+||+.-....... .......+...|||=|.+.+-.-
T Consensus 189 k~vLvLvPEi~lt~q~~~rl~~~f--~~~~v~~lhS~l~~~~R~~-~w~~~~~G~~~IViGtRSAvFaP----------- 254 (665)
T PRK14873 189 RGALVVVPDQRDVDRLEAALRALL--GAGDVAVLSAGLGPADRYR-RWLAVLRGQARVVVGTRSAVFAP----------- 254 (665)
T ss_pred CeEEEEecchhhHHHHHHHHHHHc--CCCcEEEECCCCCHHHHHH-HHHHHhCCCCcEEEEcceeEEec-----------
Confidence 569999997 57799999999999 4467888998643221111 11112235677999877654332
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccc--cCChHHHHH--HHHH----HhccCcEEEEeccCC
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQM--VESNAAAAT--EMAL----RLYAKHRWCITGTPI 360 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~--iKn~~S~~~--~al~----~L~a~~Rw~LTGTPi 360 (1045)
+. +...||+||=|- .|...+..+ +-+. ....-.-++-|+||-
T Consensus 255 ----------------~~--~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 255 ----------------VE--DLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred ----------------cC--CCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 22 357899999886 343322221 1111 123344566699984
No 119
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=86.01 E-value=1.1 Score=52.91 Aligned_cols=28 Identities=36% Similarity=0.347 Sum_probs=23.1
Q ss_pred CceeecCCCCcHHHHHHHHHHhccCCCC
Q 001607 82 GGILADEMGLGKTVELLACIFAHRKPAS 109 (1045)
Q Consensus 82 GGILADEMGLGKTvq~LalI~~~~~~~~ 109 (1045)
-|+|-.--|.|||+..|++|.+.+...+
T Consensus 37 h~llEMPSGTGKTvsLLSli~aYq~~~p 64 (755)
T KOG1131|consen 37 HCLLEMPSGTGKTVSLLSLIIAYQLHYP 64 (755)
T ss_pred cEEEECCCCCCcchHHHHHHHHHHHhCC
Confidence 4788888899999999999988765544
No 120
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=85.50 E-value=2.3 Score=49.24 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=14.6
Q ss_pred ccccceEEeccccccCC
Q 001607 319 RIFWWRICLDEAQMVES 335 (1045)
Q Consensus 319 ~i~w~rVIlDEAH~iKn 335 (1045)
.-.++.||+||||++..
T Consensus 81 ~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 81 KNKYDVIIVDEAQRLRT 97 (352)
T ss_pred CCcCCEEEEehhHhhhh
Confidence 34689999999999976
No 121
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=84.83 E-value=8.6 Score=40.68 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=24.8
Q ss_pred ccceEEeccccccCChHHHHHHHHHHhcc-CcEEEEeccCCC
Q 001607 321 FWWRICLDEAQMVESNAAAATEMALRLYA-KHRWCITGTPIQ 361 (1045)
Q Consensus 321 ~w~rVIlDEAH~iKn~~S~~~~al~~L~a-~~Rw~LTGTPiq 361 (1045)
..++||||||.++.+. .....+..+.. ..++++.|-|-|
T Consensus 93 ~~~vliVDEasmv~~~--~~~~ll~~~~~~~~klilvGD~~Q 132 (196)
T PF13604_consen 93 KKDVLIVDEASMVDSR--QLARLLRLAKKSGAKLILVGDPNQ 132 (196)
T ss_dssp STSEEEESSGGG-BHH--HHHHHHHHS-T-T-EEEEEE-TTS
T ss_pred cccEEEEecccccCHH--HHHHHHHHHHhcCCEEEEECCcch
Confidence 3568999999999643 33344444443 679999999877
No 123
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=84.40 E-value=4 Score=46.96 Aligned_cols=108 Identities=19% Similarity=0.324 Sum_probs=73.6
Q ss_pred CcEEEEeCch-hHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhh-cCccEEEEehHHHHhhcccCCCCCcc
Q 001607 222 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSDRHEG 299 (1045)
Q Consensus 222 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l-~~~dVVItTY~~l~~d~~~~~~~~~~ 299 (1045)
-.+||..|.. |..|-+-|..++...+...+++|.|.++.. +.+++ ...+++|.|-..|..-...
T Consensus 295 p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~e-------qie~lkrgveiiiatPgrlndL~~~------- 360 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNE-------QIEDLKRGVEIIIATPGRLNDLQMD------- 360 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchh-------HHHHHhcCceEEeeCCchHhhhhhc-------
Confidence 3588999976 446888888888766778888998876532 33444 4578999998887653321
Q ss_pred chhhhhhcccCCCccccccccccceEEeccccccCCh--HHHHHHHHHHhccCcEEEEecc
Q 001607 300 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLYAKHRWCITGT 358 (1045)
Q Consensus 300 ~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~--~S~~~~al~~L~a~~Rw~LTGT 358 (1045)
....--..-++|||||.++-.. .-+..+.+..++.++-.+||.-
T Consensus 361 ---------------n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSA 406 (629)
T KOG0336|consen 361 ---------------NVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSA 406 (629)
T ss_pred ---------------CeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecc
Confidence 0111223467999999997543 3667778888887776666543
No 124
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=84.30 E-value=0.66 Score=48.04 Aligned_cols=44 Identities=25% Similarity=0.271 Sum_probs=27.8
Q ss_pred hhhcCccEEEEehHHHHhhcccCCCCCccchhhhhhcccCCCccccc-cccccceEEeccccccCC
Q 001607 271 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVES 335 (1045)
Q Consensus 271 ~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~~~~r~~k~~~~~~s~L-~~i~w~rVIlDEAH~iKn 335 (1045)
.....+||||++|..+-.+.... ... ....-..||+||||+|.+
T Consensus 115 ~~~~~adivi~~y~yl~~~~~~~---------------------~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 115 ELAKNADIVICNYNYLFDPSIRK---------------------SLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HCGGG-SEEEEETHHHHSHHHHH---------------------HHCT--CCCEEEEETTGGGCGG
T ss_pred HhcccCCEEEeCHHHHhhHHHHh---------------------hhccccccCcEEEEecccchHH
Confidence 44567899999999987653210 001 122345789999999964
No 125
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=83.97 E-value=0.5 Score=45.45 Aligned_cols=81 Identities=11% Similarity=-0.040 Sum_probs=47.3
Q ss_pred chHHHhhhhHHHHHHHHHhHHHHHH---HHHHHH--HHHHHHhhccCCCCCcCc----------------eeEeeCCcCC
Q 001607 546 RKLVMALNGLAGIALIEKNLSQAVS---LYKEAM--AVVEEHSEDFRLDPLLNI----------------HLHHNLTEIL 604 (1045)
Q Consensus 546 rkvlifsq~~a~L~ii~~~~~~a~~---~y~~~l--~~~~~~~~~f~~d~~~~~----------------~~~~nl~~~n 604 (1045)
.++|+|.+.......+.+.+..... .+.+.+ ..+....+.|+.+...-+ ++.+--.+|+
T Consensus 29 ~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~~ 108 (131)
T cd00079 29 GKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWS 108 (131)
T ss_pred CcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCCC
Confidence 5777777777777777666654211 111111 233334444444332111 3333334799
Q ss_pred cchhhhhh-hhhhcCCCCceEEE
Q 001607 605 PMVANCAT-ELSQNEQHFPGCSE 626 (1045)
Q Consensus 605 p~~~~QA~-R~hriGq~~~v~~~ 626 (1045)
+..-.|+. |++|.||+..|.+|
T Consensus 109 ~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 109 PSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred HHHheecccccccCCCCceEEeC
Confidence 99999999 99999998776653
No 126
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=83.79 E-value=4.4 Score=47.85 Aligned_cols=111 Identities=18% Similarity=0.161 Sum_probs=67.1
Q ss_pred CCCCcEE-EEeCc-hhHHHHHHHHHHhcCCCCCeEEEEeCC-CCCccccccccchhhh-cCccEEEEehHHHHhhcccCC
Q 001607 219 VATGATL-IVCPA-PILAQWDAEITRHTRPGSLKTCIYEGA-RNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDS 294 (1045)
Q Consensus 219 ~~~~~tL-IV~P~-SLl~qW~~Ei~k~~~~~~l~v~vy~G~-~~~~~~~~~~~~~~~l-~~~dVVItTY~~l~~d~~~~~ 294 (1045)
...+|++ |+||. .+..|-..|.++|...-+++++..+|. ... .+...+ ..+.||++|-+.|...+.--
T Consensus 293 ~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~-------eQ~k~Lk~g~EivVaTPgRlid~VkmK- 364 (731)
T KOG0339|consen 293 PGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKW-------EQSKELKEGAEIVVATPGRLIDMVKMK- 364 (731)
T ss_pred CCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHH-------HHHHhhhcCCeEEEechHHHHHHHHhh-
Confidence 3457765 55786 577899999999975556777655554 321 122222 45789999999887655310
Q ss_pred CCCccchhhhhhcccCCCccccccccccceEEeccccccCChH--HHHHHHHHHhccC-cEEEEecc
Q 001607 295 DRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYAK-HRWCITGT 358 (1045)
Q Consensus 295 ~~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~--S~~~~al~~L~a~-~Rw~LTGT 358 (1045)
...-.+-.++|+|||.++-... .+.-.....++.+ ..++.++|
T Consensus 365 ---------------------atn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaT 410 (731)
T KOG0339|consen 365 ---------------------ATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSAT 410 (731)
T ss_pred ---------------------cccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeecc
Confidence 0112234579999999985433 2333333345544 45777776
No 127
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=83.62 E-value=7.2 Score=48.97 Aligned_cols=41 Identities=20% Similarity=0.076 Sum_probs=27.8
Q ss_pred cccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCC
Q 001607 316 LLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 361 (1045)
Q Consensus 316 ~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiq 361 (1045)
.|....|+.||+|||-.+-.+.+-. -.+.+ .+++|-|=|.|
T Consensus 356 ~l~~~~Fd~vIIDEAsQ~~ep~~li----pl~~~-~~~vLvGD~~Q 396 (637)
T TIGR00376 356 GLKGWEFDVAVIDEASQAMEPSCLI----PLLKA-RKLILAGDHKQ 396 (637)
T ss_pred hhccCCCCEEEEECccccchHHHHH----HHhhC-CeEEEecChhh
Confidence 3667789999999996665453211 11233 48899998877
No 128
>PRK04296 thymidine kinase; Provisional
Probab=81.09 E-value=8.2 Score=40.59 Aligned_cols=36 Identities=19% Similarity=0.076 Sum_probs=23.4
Q ss_pred ccceEEeccccccCChHHHHHHHHHHh-ccCcEEEEecc
Q 001607 321 FWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGT 358 (1045)
Q Consensus 321 ~w~rVIlDEAH~iKn~~S~~~~al~~L-~a~~Rw~LTGT 358 (1045)
.+++||+||+|.+.. .+....+..+ +....+++||-
T Consensus 78 ~~dvviIDEaq~l~~--~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 78 KIDCVLIDEAQFLDK--EQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred CCCEEEEEccccCCH--HHHHHHHHHHHHcCCeEEEEec
Confidence 578999999999843 2344445553 34556777764
No 129
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=81.05 E-value=5 Score=48.19 Aligned_cols=115 Identities=18% Similarity=0.155 Sum_probs=72.3
Q ss_pred CCCcEEEEeCch-hHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCc
Q 001607 220 ATGATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 298 (1045)
Q Consensus 220 ~~~~tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~ 298 (1045)
..+.+|.+||.- |..|=.++|.+-..+=.+++.+-.|..+.+.... ........++|||+-||+-+---+...
T Consensus 260 ~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~-pv~~~t~~dADIIVGTYEGiD~lLRtg----- 333 (830)
T COG1202 260 GGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREE-PVVVDTSPDADIIVGTYEGIDYLLRTG----- 333 (830)
T ss_pred CCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCC-ccccCCCCCCcEEEeechhHHHHHHcC-----
Confidence 367899999975 4567788888877555688877777755432211 123345578999999999764332110
Q ss_pred cchhhhhhcccCCCccccccccccceEEeccccccCChH--HHHHHHHHHhc----cCcEEEEecc
Q 001607 299 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY----AKHRWCITGT 358 (1045)
Q Consensus 299 ~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~--S~~~~al~~L~----a~~Rw~LTGT 358 (1045)
+ .| -....||+||.|++..-. ...--++.+|+ .-..+.||+|
T Consensus 334 ---------~-------~l--gdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSAT 381 (830)
T COG1202 334 ---------K-------DL--GDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSAT 381 (830)
T ss_pred ---------C-------cc--cccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEee
Confidence 0 01 134679999999997622 23333334432 3456788888
No 130
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=80.22 E-value=3.3 Score=50.06 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=26.2
Q ss_pred ccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCC
Q 001607 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 361 (1045)
Q Consensus 317 L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiq 361 (1045)
+.+..|+.||+|||-..--+.+. -. +-...+++|.|-|.|
T Consensus 354 ~~~~~fD~vIIDEaaQamE~~cW--ip---vlk~kk~ILaGDp~Q 393 (649)
T KOG1803|consen 354 LRKRTFDLVIIDEAAQAMEPQCW--IP---VLKGKKFILAGDPKQ 393 (649)
T ss_pred hcccCCCEEEEehhhhhccchhh--hH---HhcCCceEEeCCccc
Confidence 44566999999998654433322 11 223349999999987
No 131
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=79.80 E-value=3.8 Score=51.20 Aligned_cols=102 Identities=14% Similarity=0.074 Sum_probs=63.4
Q ss_pred CcEEEEeCchhHH----HHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCC
Q 001607 222 GATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 297 (1045)
Q Consensus 222 ~~tLIV~P~SLl~----qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~ 297 (1045)
+.+-||+|+..+. +|...+-+++ .++|....+..... .....-.+||+-+|-..+.-|+-.+.-..
T Consensus 120 ~~VhvvT~NdyLA~RDae~m~~ly~~L---GLsvg~i~~~~~~~-------err~aY~~DItYgTn~e~gFDyLRDnm~~ 189 (764)
T PRK12326 120 RRVHVITVNDYLARRDAEWMGPLYEAL---GLTVGWITEESTPE-------ERRAAYACDVTYASVNEIGFDVLRDQLVT 189 (764)
T ss_pred CCeEEEcCCHHHHHHHHHHHHHHHHhc---CCEEEEECCCCCHH-------HHHHHHcCCCEEcCCcccccccchhhhcc
Confidence 4688999998773 7888888888 68888876653211 12233467888877766665543211100
Q ss_pred ccchhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccC
Q 001607 298 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTP 359 (1045)
Q Consensus 298 ~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTP 359 (1045)
.+.......++.+|+||+..+-=. .|+.-+++||.+
T Consensus 190 ---------------~~~~~v~R~~~faIVDEvDSiLID-----------eArtPLiISg~~ 225 (764)
T PRK12326 190 ---------------DVADLVSPNPDVAIIDEADSVLVD-----------EALVPLVLAGST 225 (764)
T ss_pred ---------------ChHhhcCCccceeeecchhhheec-----------cccCceeeeCCC
Confidence 001233456889999999875311 255667888765
No 132
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=77.83 E-value=8.7 Score=51.46 Aligned_cols=84 Identities=23% Similarity=0.254 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhHhhhhhhhccccCCCCCcccccCccccchhhhhchhhHHHhHHHHH
Q 001607 951 SKQLHILEAMRKEYA-NARSLATAQAQFLRAHDEIRMATTRLHLKEDDNDTSVDALSPDELASASVTNSSEKFISMTLLS 1029 (1045)
Q Consensus 951 ~~~l~~le~~rkE~~-~~r~l~~a~~~~l~A~DEL~ma~~Rlrlr~~~e~~~~~~i~~~ev~~~~~~~~~~k~~a~~~l~ 1029 (1045)
..|-.+++..|.++. .+..+.....+.|.++.++. .+| +.......... -.++..+...|...-|++..-..
T Consensus 1118 ~~f~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~---~~l--~~~~~~~~~~~--~~di~~ql~~L~~~~f~~~~~~~ 1190 (1283)
T TIGR01967 1118 ADFAALLAQVRAELAPEVERIAKQLEEILVLFGNIR---KRL--KGKIDPTQAKA--LSDIKAQLDKLVYQGFVRTTGPQ 1190 (1283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHh--ccCCChhhhhH--HHHHHHHHHHhccCCccccCCHH
Confidence 344455666666654 56667777777777777773 233 21111011111 13777777788888888877777
Q ss_pred Hhhccccccccc
Q 001607 1030 QVKGKLRYLKVS 1041 (1045)
Q Consensus 1030 ~~~gql~YL~~~ 1041 (1045)
++.-=-|||+.+
T Consensus 1191 ~l~~~pRYl~A~ 1202 (1283)
T TIGR01967 1191 RLSHLPRYLKAM 1202 (1283)
T ss_pred HHhHhHHHHHHH
Confidence 777777787765
No 133
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=77.69 E-value=11 Score=44.47 Aligned_cols=110 Identities=21% Similarity=0.183 Sum_probs=63.4
Q ss_pred cEEEEeCchhH-HHH---HHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCc
Q 001607 223 ATLIVCPAPIL-AQW---DAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 298 (1045)
Q Consensus 223 ~tLIV~P~SLl-~qW---~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~ 298 (1045)
..|||+|+-=+ .|- ...|..|+ +.++...+.|...... .+..-.-....|+|.|-+.|..-+.+-.
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l--~~l~~~l~vGG~~v~~----Di~~fkee~~nIlVgTPGRL~di~~~~~---- 150 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHL--PNLNCELLVGGRSVEE----DIKTFKEEGPNILVGTPGRLLDILQREA---- 150 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhh--hccceEEEecCccHHH----HHHHHHHhCCcEEEeCchhHHHHHhchh----
Confidence 57999998643 343 34455554 6788888888743210 1111122346699999888876554311
Q ss_pred cchhhhhhcccCCCccccccccccceEEeccccccCChH--HHHHHHHHHhccCcEEE-Eecc
Q 001607 299 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYAKHRWC-ITGT 358 (1045)
Q Consensus 299 ~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~--S~~~~al~~L~a~~Rw~-LTGT 358 (1045)
..+.--.-..+|+|||.++-... ...-..+..|+-.+|-. .|+|
T Consensus 151 ----------------~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSAT 197 (567)
T KOG0345|consen 151 ----------------EKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSAT 197 (567)
T ss_pred ----------------hhccccccceEEecchHhHhcccHHHHHHHHHHhcccccccccccch
Confidence 01222345789999999985432 34444555565555432 3444
No 134
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=76.14 E-value=1.5 Score=49.33 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=29.6
Q ss_pred hhhcCccEEEEehHHHHhhcccCCCCCccchhhhhhcccCCCccccccccccceEEeccccccCC
Q 001607 271 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 335 (1045)
Q Consensus 271 ~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn 335 (1045)
.....+||||++|..|..+..... . . ....-..||+||||++..
T Consensus 207 ~~~~~Adivi~ny~yll~~~~r~~---------------~----~--~~l~~~~lIiDEAHnL~d 250 (289)
T smart00488 207 KAIEFANVVVLPYQYLLDPKIRQA---------------L----S--IELKDSIVIFDEAHNLDN 250 (289)
T ss_pred HHhhcCCEEEECHHHHhcHHHHHH---------------h----c--ccccccEEEEeCccChHH
Confidence 445789999999999976542100 0 0 011357899999999964
No 135
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=76.14 E-value=1.5 Score=49.33 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=29.6
Q ss_pred hhhcCccEEEEehHHHHhhcccCCCCCccchhhhhhcccCCCccccccccccceEEeccccccCC
Q 001607 271 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 335 (1045)
Q Consensus 271 ~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn 335 (1045)
.....+||||++|..|..+..... . . ....-..||+||||++..
T Consensus 207 ~~~~~Adivi~ny~yll~~~~r~~---------------~----~--~~l~~~~lIiDEAHnL~d 250 (289)
T smart00489 207 KAIEFANVVVLPYQYLLDPKIRQA---------------L----S--IELKDSIVIFDEAHNLDN 250 (289)
T ss_pred HHhhcCCEEEECHHHHhcHHHHHH---------------h----c--ccccccEEEEeCccChHH
Confidence 445789999999999976542100 0 0 011357899999999964
No 136
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=75.17 E-value=1.4 Score=53.48 Aligned_cols=50 Identities=12% Similarity=0.199 Sum_probs=34.4
Q ss_pred CCcchhhhhh-hhhhcCCCCceEEEeccccCCccccchhHhhhhccccccCCCCC
Q 001607 603 ILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFT 656 (1045)
Q Consensus 603 ~np~~~~QA~-R~hriGq~~~v~~~r~~~~~t~ee~~~~~~k~k~~~~~~~~~~~ 656 (1045)
.-|-.-.+|- |+-|-|.+-|++-||+.|+.+..+.... ..|+|...++++
T Consensus 667 ~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~----stvPEIqRTNl~ 717 (1042)
T KOG0924|consen 667 IVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLP----STVPEIQRTNLS 717 (1042)
T ss_pred EEechhccchhhccccCCCCCcceeeehhhhHHHhhccc----CCCchhhhcchh
Confidence 4455555566 8999999999999999999887665422 245555554443
No 137
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=74.21 E-value=2.4 Score=53.83 Aligned_cols=48 Identities=25% Similarity=0.246 Sum_probs=33.3
Q ss_pred hhhcCccEEEEehHHHHhhcccCCCCCccchhhhhhcccCCCccccccccccceEEeccccccCChH
Q 001607 271 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 337 (1045)
Q Consensus 271 ~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~ 337 (1045)
.....+|||||+++.|-.|+... . ...|.......+|+||||++....
T Consensus 215 ~~a~~AdivVtNH~LLladl~~~-~------------------~~iLp~~~~~~lViDEAH~L~d~A 262 (697)
T PRK11747 215 REIDEADVVVANHDLVLADLELG-G------------------GVVLPDPENLLYVLDEGHHLPDVA 262 (697)
T ss_pred HHHhhCCEEEECcHHHHhhhhcc-C------------------CcccCCCCCCEEEEECccchHHHH
Confidence 34577999999999998886310 0 012333457889999999996443
No 138
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=73.41 E-value=7.2 Score=49.58 Aligned_cols=87 Identities=15% Similarity=0.063 Sum_probs=54.1
Q ss_pred CcEEEEeCchhHH----HHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCC
Q 001607 222 GATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 297 (1045)
Q Consensus 222 ~~tLIV~P~SLl~----qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~ 297 (1045)
..+-||+|+..+. .|...+-+++ +++|....|..... .....-.+||+-+|-..|.-|+-.+.-..
T Consensus 122 ~~v~vvT~neyLA~Rd~e~~~~~~~~L---Gl~vg~i~~~~~~~-------~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~ 191 (796)
T PRK12906 122 KGVHVVTVNEYLSSRDATEMGELYRWL---GLTVGLNLNSMSPD-------EKRAAYNCDITYSTNSELGFDYLRDNMVV 191 (796)
T ss_pred CCeEEEeccHHHHHhhHHHHHHHHHhc---CCeEEEeCCCCCHH-------HHHHHhcCCCeecCCccccccchhhcccc
Confidence 4678889988773 6888888877 58888877653211 12334467888888777766543221100
Q ss_pred ccchhhhhhcccCCCccccccccccceEEecccccc
Q 001607 298 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 333 (1045)
Q Consensus 298 ~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~i 333 (1045)
. +..+....++.+|+||+..+
T Consensus 192 ~---------------~~~~v~r~~~~aIvDEvDSi 212 (796)
T PRK12906 192 Y---------------KEQMVQRPLNYAIVDEVDSI 212 (796)
T ss_pred c---------------hhhhhccCcceeeeccchhe
Confidence 0 01233446788888988875
No 139
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=71.35 E-value=16 Score=46.29 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=35.1
Q ss_pred ccceEEeccccccCChHHHHHHHHHHh---ccCcEEEEeccCCCCChhhhhhcccccCCCCCC
Q 001607 321 FWWRICLDEAQMVESNAAAATEMALRL---YAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 380 (1045)
Q Consensus 321 ~w~rVIlDEAH~iKn~~S~~~~al~~L---~a~~Rw~LTGTPiqN~l~DL~~LL~FL~p~~~~ 380 (1045)
.|.++||||+|++.+.. ...+++.| ....+++|+.|=.+.=+.-|.+-...++..++.
T Consensus 119 r~KVIIIDEah~LT~~A--~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls 179 (830)
T PRK07003 119 RFKVYMIDEVHMLTNHA--FNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMP 179 (830)
T ss_pred CceEEEEeChhhCCHHH--HHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcC
Confidence 57899999999996432 22334444 346688888886555444555544444434443
No 140
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=70.69 E-value=43 Score=42.59 Aligned_cols=100 Identities=14% Similarity=0.099 Sum_probs=55.5
Q ss_pred CcEEEEe-CchhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 222 GATLIVC-PAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~-P~SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
..+|||. =.|++.+-..-++..-- -.+..|....... -....++.+++..+.+-+...
T Consensus 79 ~~VLvVShRrSL~~sL~~rf~~~~l---~gFv~Y~d~~~~~---------i~~~~~~rLivqIdSL~R~~~--------- 137 (824)
T PF02399_consen 79 KSVLVVSHRRSLTKSLAERFKKAGL---SGFVNYLDSDDYI---------IDGRPYDRLIVQIDSLHRLDG--------- 137 (824)
T ss_pred CeEEEEEhHHHHHHHHHHHHhhcCC---Ccceeeecccccc---------ccccccCeEEEEehhhhhccc---------
Confidence 4677774 35666666666654321 1344455442211 111357889999998866421
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCCh----H----HHHHHHHHHh--ccCcEEEEecc
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN----A----AAATEMALRL--YAKHRWCITGT 358 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~----~----S~~~~al~~L--~a~~Rw~LTGT 358 (1045)
..+. .||.|||||+-.+-+. + ......+..+ ++++.+++-||
T Consensus 138 --------------~~l~--~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ 189 (824)
T PF02399_consen 138 --------------SLLD--RYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDAD 189 (824)
T ss_pred --------------cccc--ccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCC
Confidence 1122 3999999998653221 1 1222223332 58888998888
No 141
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=69.51 E-value=3.8 Score=39.57 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=27.1
Q ss_pred ceEEeccccccCChHHHHHHHHHHh--ccCcEEEEeccC
Q 001607 323 WRICLDEAQMVESNAAAATEMALRL--YAKHRWCITGTP 359 (1045)
Q Consensus 323 ~rVIlDEAH~iKn~~S~~~~al~~L--~a~~Rw~LTGTP 359 (1045)
..||+||+|.+. +......++.+ .....+++.|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999994 24555666665 567789999999
No 142
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=69.43 E-value=2.2 Score=51.94 Aligned_cols=37 Identities=41% Similarity=0.886 Sum_probs=31.6
Q ss_pred hhhhhhcccccccccccccccccccccccccccccccCCC
Q 001607 135 ERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPR 174 (1045)
Q Consensus 135 ~~~~c~c~~~~~~~~~~~~~v~c~~c~~w~h~~cv~~~~~ 174 (1045)
....|+|+..... .|..++|+.|..|+|..|+|+...
T Consensus 85 ~~~~c~c~~~~~~---~g~~i~c~~c~~Wqh~~C~g~~~~ 121 (508)
T KOG1844|consen 85 EISRCDCGLEDDM---EGLMIQCDWCGRWQHKICCGSFKS 121 (508)
T ss_pred cccccccccccCC---CceeeCCcccCcccCceeeeecCC
Confidence 4578999988775 788999999999999999997653
No 143
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=69.05 E-value=2.3 Score=47.58 Aligned_cols=49 Identities=37% Similarity=0.826 Sum_probs=37.4
Q ss_pred hhhhhhccccccccccccccccccc--cc-ccccccccccCCCCCCccchhhhhhhccccccccccccCCcccccchhhh
Q 001607 135 ERVECICGAVSESRKYKGLWVQCDI--CD-AWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDEL 211 (1045)
Q Consensus 135 ~~~~c~c~~~~~~~~~~~~~v~c~~--c~-~w~h~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~ 211 (1045)
+...|+|.-++ .|..|.||. |. .|.|..|||..... .+..+|+.|...
T Consensus 218 e~~yC~Cnqvs-----yg~Mi~CDn~~C~~eWFH~~CVGL~~~P------------------------kgkWyC~~C~~~ 268 (274)
T KOG1973|consen 218 EPTYCICNQVS-----YGKMIGCDNPGCPIEWFHFTCVGLKTKP------------------------KGKWYCPRCKAE 268 (274)
T ss_pred CCEEEEecccc-----cccccccCCCCCCcceEEEeccccccCC------------------------CCcccchhhhhh
Confidence 45678888444 367899999 99 89999999987543 456899999764
Q ss_pred h
Q 001607 212 I 212 (1045)
Q Consensus 212 ~ 212 (1045)
.
T Consensus 269 ~ 269 (274)
T KOG1973|consen 269 N 269 (274)
T ss_pred h
Confidence 3
No 144
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=68.97 E-value=11 Score=47.21 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=18.2
Q ss_pred CceeecCCCCcHHHHHHHHHHh
Q 001607 82 GGILADEMGLGKTVELLACIFA 103 (1045)
Q Consensus 82 GGILADEMGLGKTvq~LalI~~ 103 (1045)
--|+|-|.|-|||-|+=-++..
T Consensus 273 vvIIcGeTGsGKTTQvPQFLYE 294 (1172)
T KOG0926|consen 273 VVIICGETGSGKTTQVPQFLYE 294 (1172)
T ss_pred eEEEecCCCCCccccchHHHHH
Confidence 3689999999999999777643
No 145
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=68.86 E-value=8 Score=46.26 Aligned_cols=31 Identities=16% Similarity=0.181 Sum_probs=23.8
Q ss_pred CcEEEEeCch-hHHHHHHHHHHhcCCCCCeEE
Q 001607 222 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTC 252 (1045)
Q Consensus 222 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~v~ 252 (1045)
+||||++|+- |..|-.+|++.|++.....++
T Consensus 58 rPtLV~AhNKTLAaQLy~Efk~fFP~NaVEYF 89 (663)
T COG0556 58 RPTLVLAHNKTLAAQLYSEFKEFFPENAVEYF 89 (663)
T ss_pred CCeEEEecchhHHHHHHHHHHHhCcCcceEEE
Confidence 6999999975 557999999999944334433
No 146
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=68.55 E-value=12 Score=44.68 Aligned_cols=86 Identities=22% Similarity=0.276 Sum_probs=57.3
Q ss_pred cEEEEeCch-hHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccch
Q 001607 223 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 301 (1045)
Q Consensus 223 ~tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~ 301 (1045)
..+|.+|.- |..|-..|-.+|..+-.++++..-|...-. .....-...++|||.|-..|-.-+..
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~E-----Eq~fqls~gceiviatPgrLid~Len--------- 389 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFE-----EQGFQLSMGCEIVIATPGRLIDSLEN--------- 389 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchh-----hhhhhhhccceeeecCchHHHHHHHH---------
Confidence 367889986 557999999999977678887776653211 01122234588999998887664421
Q ss_pred hhhhhcccCCCccccccccccceEEeccccccCC
Q 001607 302 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 335 (1045)
Q Consensus 302 ~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn 335 (1045)
+ .|..-.--+||+|||.++-.
T Consensus 390 -------r------~lvl~qctyvvldeadrmiD 410 (673)
T KOG0333|consen 390 -------R------YLVLNQCTYVVLDEADRMID 410 (673)
T ss_pred -------H------HHHhccCceEeccchhhhhc
Confidence 1 13333456899999998743
No 147
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=67.81 E-value=30 Score=38.55 Aligned_cols=87 Identities=18% Similarity=0.053 Sum_probs=50.1
Q ss_pred CcEEEEeCchhH----HHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCC
Q 001607 222 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 297 (1045)
Q Consensus 222 ~~tLIV~P~SLl----~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~ 297 (1045)
+++=||+.+.-+ .+|...+-+++ ++.+-...+.... ......-..||+-+|-..+..|+-.+.-..
T Consensus 119 ~~V~vvT~NdyLA~RD~~~~~~~y~~L---Glsv~~~~~~~~~-------~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~ 188 (266)
T PF07517_consen 119 KGVHVVTSNDYLAKRDAEEMRPFYEFL---GLSVGIITSDMSS-------EERREAYAADIVYGTNSEFGFDYLRDNLAL 188 (266)
T ss_dssp S-EEEEESSHHHHHHHHHHHHHHHHHT---T--EEEEETTTEH-------HHHHHHHHSSEEEEEHHHHHHHHHHHTT-S
T ss_pred CCcEEEeccHHHhhccHHHHHHHHHHh---hhccccCccccCH-------HHHHHHHhCcccccccchhhHHHHHHHHhh
Confidence 467777777655 37999999998 5888666554221 011233457899998888777643211000
Q ss_pred ccchhhhhhcccCCCccccccccccceEEecccccc
Q 001607 298 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 333 (1045)
Q Consensus 298 ~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~i 333 (1045)
.+.......++.+|+||+..+
T Consensus 189 ---------------~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 189 ---------------SKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp ---------------SGGG--SSSSSEEEECTHHHH
T ss_pred ---------------ccchhccCCCCEEEEeccceE
Confidence 001123456789999998765
No 148
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=66.81 E-value=19 Score=46.28 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=53.7
Q ss_pred CcEEEEeCchhH----HHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCC
Q 001607 222 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 297 (1045)
Q Consensus 222 ~~tLIV~P~SLl----~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~ 297 (1045)
+.+-||+++--+ ..|...+-+|+ .+.|-+..+.... ......-.+||+-+|-..|.-|+-.+.-..
T Consensus 127 kgVhVVTvNdYLA~RDae~m~~vy~~L---GLtvg~i~~~~~~-------~err~aY~~DItYgTn~e~gFDYLRDnm~~ 196 (939)
T PRK12902 127 KGVHVVTVNDYLARRDAEWMGQVHRFL---GLSVGLIQQDMSP-------EERKKNYACDITYATNSELGFDYLRDNMAT 196 (939)
T ss_pred CCeEEEeCCHHHHHhHHHHHHHHHHHh---CCeEEEECCCCCh-------HHHHHhcCCCeEEecCCcccccchhhhhcc
Confidence 467788887654 38999999999 6888766543211 122233468899888777755543211100
Q ss_pred ccchhhhhhcccCCCccccccccccceEEecccccc
Q 001607 298 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 333 (1045)
Q Consensus 298 ~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~i 333 (1045)
.+.......++++||||+..+
T Consensus 197 ---------------~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 197 ---------------DISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred ---------------cccccccCccceEEEecccce
Confidence 011233456788999999876
No 149
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.34 E-value=35 Score=42.75 Aligned_cols=20 Identities=20% Similarity=0.208 Sum_probs=16.5
Q ss_pred eeecCCCCcHHHHHHHHHHh
Q 001607 84 ILADEMGLGKTVELLACIFA 103 (1045)
Q Consensus 84 ILADEMGLGKTvq~LalI~~ 103 (1045)
||.-..|.|||..+.++.-.
T Consensus 41 LF~GPpGvGKTTlAriLAK~ 60 (702)
T PRK14960 41 LFTGTRGVGKTTIARILAKC 60 (702)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 88889999999888776643
No 150
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=63.30 E-value=6.6 Score=41.97 Aligned_cols=43 Identities=28% Similarity=0.209 Sum_probs=22.3
Q ss_pred cccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCCh
Q 001607 320 IFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKL 364 (1045)
Q Consensus 320 i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l 364 (1045)
+.+..||+||||++.. ...-..+.++....+++++|=|.|.+.
T Consensus 118 ~~~~~iIvDEaQN~t~--~~~k~ilTR~g~~skii~~GD~~Q~D~ 160 (205)
T PF02562_consen 118 FDNAFIIVDEAQNLTP--EELKMILTRIGEGSKIIITGDPSQIDL 160 (205)
T ss_dssp B-SEEEEE-SGGG--H--HHHHHHHTTB-TT-EEEEEE-------
T ss_pred ccceEEEEecccCCCH--HHHHHHHcccCCCcEEEEecCceeecC
Confidence 3457899999999853 233344566778899999999988754
No 151
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=61.19 E-value=35 Score=39.08 Aligned_cols=112 Identities=20% Similarity=0.170 Sum_probs=66.6
Q ss_pred cEEEEeCch-hHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhh-cCccEEEEehHHHHhhcccCCCCCccc
Q 001607 223 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 223 ~tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l-~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
-.||+.|.. +..|-.+.|.---.+-.+++.++.|.... ......+ .+.++||+|-+.+...+....+.
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~------i~qa~~L~~rPHvVvatPGRlad~l~sn~~~---- 146 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDM------IMQAAILSDRPHVVVATPGRLADHLSSNLGV---- 146 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHH------hhhhhhcccCCCeEecCccccccccccCCcc----
Confidence 469999986 44577777765544457888888776432 2222333 45779999999887655421110
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccccCChH-HHHHHHH-HHhccC-cEEEEecc
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMA-LRLYAK-HRWCITGT 358 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~-S~~~~al-~~L~a~-~Rw~LTGT 358 (1045)
....+. .-..+|+|||.++-+.. ......+ ..++.. -.+++|+|
T Consensus 147 ------------~~~~~~--rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSAT 193 (442)
T KOG0340|consen 147 ------------CSWIFQ--RLKFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSAT 193 (442)
T ss_pred ------------chhhhh--ceeeEEecchhhhhccchhhHHhhhhccCCCccceEEEEee
Confidence 001122 23469999999987653 1111222 224443 67999999
No 152
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=60.55 E-value=25 Score=38.89 Aligned_cols=20 Identities=25% Similarity=0.082 Sum_probs=15.9
Q ss_pred CceeecCCCCcHHHHHHHHH
Q 001607 82 GGILADEMGLGKTVELLACI 101 (1045)
Q Consensus 82 GGILADEMGLGKTvq~LalI 101 (1045)
.-+|.=.+|.|||..+-++.
T Consensus 44 ~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 34778899999999886665
No 153
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.20 E-value=5.5 Score=50.70 Aligned_cols=64 Identities=20% Similarity=0.191 Sum_probs=39.4
Q ss_pred HHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccchhhhhhcccCCCccccc
Q 001607 238 AEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLL 317 (1045)
Q Consensus 238 ~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~~~~r~~k~~~~~~s~L 317 (1045)
+|+.++. ....++.|... ......+||||.+|..+-..... + ..-
T Consensus 172 EdL~~~g--~~~~~CPY~~s------------r~~~~~advIi~pYnyl~dp~~r---------~------------~~~ 216 (705)
T TIGR00604 172 EDLVEYG--ELLGLCPYFAT------------RKMLPFANIVLLPYQYLLDPKIR---------S------------AVS 216 (705)
T ss_pred HHHHHhc--ccCCCCccHHH------------HHhhhcCCEEEechHHhcCHHHH---------H------------Hhh
Confidence 4555555 34556666554 34557899999999998643210 0 011
Q ss_pred cccccceEEeccccccCCh
Q 001607 318 TRIFWWRICLDEAQMVESN 336 (1045)
Q Consensus 318 ~~i~w~rVIlDEAH~iKn~ 336 (1045)
..+.-..||+||||+|-+.
T Consensus 217 ~~l~~~ivI~DEAHNL~d~ 235 (705)
T TIGR00604 217 IELKDSIVIFDEAHNLDNV 235 (705)
T ss_pred cccccCEEEEECccchHHH
Confidence 1233478999999999643
No 154
>PRK10536 hypothetical protein; Provisional
Probab=58.15 E-value=9.4 Score=42.21 Aligned_cols=41 Identities=29% Similarity=0.187 Sum_probs=33.3
Q ss_pred cceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCCh
Q 001607 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKL 364 (1045)
Q Consensus 322 w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l 364 (1045)
=..||+||||++.- ...-..+.++....+++++|-|-|.++
T Consensus 177 ~~~vIvDEaqn~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 177 NAVVILDEAQNVTA--AQMKMFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred CCEEEEechhcCCH--HHHHHHHhhcCCCCEEEEeCChhhccC
Confidence 36899999999964 455566678889999999999988764
No 155
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=57.60 E-value=43 Score=39.91 Aligned_cols=112 Identities=22% Similarity=0.211 Sum_probs=66.7
Q ss_pred CCcEEEEeCchhH-HHHHHHHHHhcCC-CCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCc
Q 001607 221 TGATLIVCPAPIL-AQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 298 (1045)
Q Consensus 221 ~~~tLIV~P~SLl-~qW~~Ei~k~~~~-~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~ 298 (1045)
.-.+|||||.--+ .|=..|.++...- ++..|.+.-|..+.+.. .........++|.|-..|..++.....
T Consensus 154 ~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e-----~~kl~k~~niliATPGRLlDHlqNt~~--- 225 (543)
T KOG0342|consen 154 GTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVE-----ADKLVKGCNILIATPGRLLDHLQNTSG--- 225 (543)
T ss_pred CeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHH-----HHHhhccccEEEeCCchHHhHhhcCCc---
Confidence 3468999998755 5777776654431 36677666665432211 111123578999999999887754221
Q ss_pred cchhhhhhcccCCCccccccccccceEEeccccccCChH--HHHHHHHHHhc-cCcEEEEecc
Q 001607 299 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGT 358 (1045)
Q Consensus 299 ~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~--S~~~~al~~L~-a~~Rw~LTGT 358 (1045)
+.-..-..+|+|||.++-... --.-+.+..|. -+..++.|+|
T Consensus 226 ------------------f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT 270 (543)
T KOG0342|consen 226 ------------------FLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSAT 270 (543)
T ss_pred ------------------chhhccceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCC
Confidence 111122789999999985322 22233334443 3456888888
No 156
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=57.32 E-value=40 Score=42.81 Aligned_cols=107 Identities=14% Similarity=0.066 Sum_probs=66.4
Q ss_pred CcEEEEeCc-hhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccc
Q 001607 222 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~ 300 (1045)
+.+||++|. ++..|-.+.|+..+ + .++.++|+.-..+... ........++..|||=|.+.+-.-+
T Consensus 246 kqvLvLVPEI~Ltpq~~~rf~~rF--g-~~v~vlHS~Ls~~er~-~~W~~~~~G~~~vVIGtRSAlF~Pf---------- 311 (730)
T COG1198 246 KQVLVLVPEIALTPQLLARFKARF--G-AKVAVLHSGLSPGERY-RVWRRARRGEARVVIGTRSALFLPF---------- 311 (730)
T ss_pred CEEEEEeccccchHHHHHHHHHHh--C-CChhhhcccCChHHHH-HHHHHHhcCCceEEEEechhhcCch----------
Confidence 579999996 78899999999998 3 8888888763322110 0111223366789997777665432
Q ss_pred hhhhhhcccCCCccccccccccceEEeccccc--cCChHHHHH--HHHH----HhccCcEEEEeccCCC
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQM--VESNAAAAT--EMAL----RLYAKHRWCITGTPIQ 361 (1045)
Q Consensus 301 ~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~--iKn~~S~~~--~al~----~L~a~~Rw~LTGTPiq 361 (1045)
. +-..||+||=|- .|..+...+ +-+. ....--.++-|+||--
T Consensus 312 -----------------~--~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPSL 361 (730)
T COG1198 312 -----------------K--NLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPSL 361 (730)
T ss_pred -----------------h--hccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCCH
Confidence 2 246899999997 444332221 1111 2233446788999943
No 157
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=56.93 E-value=36 Score=40.93 Aligned_cols=107 Identities=16% Similarity=0.236 Sum_probs=62.8
Q ss_pred EEEEeCch-hHHHHHHHHHHhcCCCCCeEE----EEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCc
Q 001607 224 TLIVCPAP-ILAQWDAEITRHTRPGSLKTC----IYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 298 (1045)
Q Consensus 224 tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~v~----vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~ 298 (1045)
.|||||.- |..|-.+-+.+...+ +..+ +..|.++... ...--...+|+|-|-..|..++......
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~--~hWIVPg~lmGGEkkKSE------KARLRKGiNILIgTPGRLvDHLknT~~i-- 283 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKP--FHWIVPGVLMGGEKKKSE------KARLRKGINILIGTPGRLVDHLKNTKSI-- 283 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcC--ceEEeeceeecccccccH------HHHHhcCceEEEcCchHHHHHHhccchh--
Confidence 69999986 667888888887743 3322 2333332210 1111234679999999998887543221
Q ss_pred cchhhhhhcccCCCccccccccccceEEeccccccCC-----hHHHHHHHHHHhc---c--------CcEEEEeccC
Q 001607 299 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES-----NAAAATEMALRLY---A--------KHRWCITGTP 359 (1045)
Q Consensus 299 ~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn-----~~S~~~~al~~L~---a--------~~Rw~LTGTP 359 (1045)
.+.++. .||+|||.+|-. .-++..+++..++ + .-+++||+|-
T Consensus 284 -----------------~~s~LR--wlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATL 341 (708)
T KOG0348|consen 284 -----------------KFSRLR--WLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATL 341 (708)
T ss_pred -----------------eeeeee--EEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhh
Confidence 133333 499999999743 2255555553321 1 2357788884
No 158
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=56.61 E-value=7.9 Score=50.07 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=29.7
Q ss_pred hhcCccEEEEehHHHHhhcccCCCCCccchhhhhhcccCCCccccccccccceEEeccccccC
Q 001607 272 ELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 334 (1045)
Q Consensus 272 ~l~~~dVVItTY~~l~~d~~~~~~~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iK 334 (1045)
....+|||||++..|..+..... .+ -.++.||+||||++.
T Consensus 410 ~a~~AdivItNHall~~~~~~~~---------------------~~--p~~~~lIiDEAH~l~ 449 (820)
T PRK07246 410 KAKTARLLITNHAYFLTRVQDDK---------------------DF--ARNKVLVFDEAQKLM 449 (820)
T ss_pred HHHhCCEEEEchHHHHHHHhhcc---------------------CC--CCCCEEEEECcchhH
Confidence 35679999999999988653210 01 147899999999996
No 159
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=56.58 E-value=7.5 Score=51.05 Aligned_cols=44 Identities=32% Similarity=0.395 Sum_probs=31.4
Q ss_pred hhhcCccEEEEehHHHHhhcccCCCCCccchhhhhhcccCCCccccccccccceEEeccccccCCh
Q 001607 271 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN 336 (1045)
Q Consensus 271 ~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~ 336 (1045)
.....+|||||++..|..++.... ..|. .+..+|+||||++...
T Consensus 427 ~~a~~AdivItNHalLl~dl~~~~--------------------~ilp--~~~~lViDEAH~l~d~ 470 (928)
T PRK08074 427 NRAKFADLVITNHALLLTDLTSEE--------------------PLLP--SYEHIIIDEAHHFEEA 470 (928)
T ss_pred HHHhcCCEEEECHHHHHHHHhhhc--------------------ccCC--CCCeEEEECCchHHHH
Confidence 345789999999999998863100 0121 3689999999999643
No 160
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=56.05 E-value=34 Score=41.33 Aligned_cols=111 Identities=17% Similarity=0.154 Sum_probs=68.8
Q ss_pred cEEEEeCch-hHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccch
Q 001607 223 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 301 (1045)
Q Consensus 223 ~tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~ 301 (1045)
--|||+|.- |..|-.+-|..-+..+.+++..+.|.-.... ...--....||||.|-..|-.-+.... .
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqK-----QqRlL~~~p~IVVATPGRlweli~e~n------~ 333 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQK-----QQRLLNQRPDIVVATPGRLWELIEEDN------T 333 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHH-----HHHHHhcCCCEEEecchHHHHHHHhhh------h
Confidence 479999986 6678888888888777899988888632110 011111367899999888766543210 0
Q ss_pred hhhhhcccCCCcccccccc-ccceEEeccccccC--ChHHHHHHHHHHhc------cCcEEEEecc
Q 001607 302 RFMRFQKRYPVIPTLLTRI-FWWRICLDEAQMVE--SNAAAATEMALRLY------AKHRWCITGT 358 (1045)
Q Consensus 302 ~~~r~~k~~~~~~s~L~~i-~w~rVIlDEAH~iK--n~~S~~~~al~~L~------a~~Rw~LTGT 358 (1045)
.|..+ .-..+|||||.++- +.-...++.+..|. -+..++.|+|
T Consensus 334 --------------~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSAT 385 (731)
T KOG0347|consen 334 --------------HLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSAT 385 (731)
T ss_pred --------------hhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEE
Confidence 01111 13469999999973 33344455555543 2345788888
No 161
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.97 E-value=58 Score=39.86 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=15.8
Q ss_pred eeecCCCCcHHHHHHHHHHh
Q 001607 84 ILADEMGLGKTVELLACIFA 103 (1045)
Q Consensus 84 ILADEMGLGKTvq~LalI~~ 103 (1045)
|+.-..|.|||..+..+.-.
T Consensus 42 Lf~Gp~G~GKTt~A~~lAk~ 61 (509)
T PRK14958 42 LFTGTRGVGKTTISRILAKC 61 (509)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 67778999999887776643
No 162
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=55.05 E-value=21 Score=44.51 Aligned_cols=75 Identities=16% Similarity=0.306 Sum_probs=48.3
Q ss_pred EEEEeC-chhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccchh
Q 001607 224 TLIVCP-APILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRR 302 (1045)
Q Consensus 224 tLIV~P-~SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~~ 302 (1045)
++--.| ++|-.|=.+|+..-+ ++ |-...|. ..-..++..+|+|-+.|++.+...+
T Consensus 175 VIYTSPIKALSNQKYREl~~EF--~D--VGLMTGD------------VTInP~ASCLVMTTEILRsMLYRGS-------- 230 (1041)
T KOG0948|consen 175 VIYTSPIKALSNQKYRELLEEF--KD--VGLMTGD------------VTINPDASCLVMTTEILRSMLYRGS-------- 230 (1041)
T ss_pred EEeeChhhhhcchhHHHHHHHh--cc--cceeecc------------eeeCCCCceeeeHHHHHHHHHhccc--------
Confidence 444455 355567788887766 22 3334443 1223456688999999999875422
Q ss_pred hhhhcccCCCccccccccccceEEeccccccCCh
Q 001607 303 FMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN 336 (1045)
Q Consensus 303 ~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~ 336 (1045)
..+..+.| ||+||.|+++..
T Consensus 231 ------------EvmrEVaW--VIFDEIHYMRDk 250 (1041)
T KOG0948|consen 231 ------------EVMREVAW--VIFDEIHYMRDK 250 (1041)
T ss_pred ------------hHhheeee--EEeeeehhcccc
Confidence 23566777 999999999864
No 163
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=54.98 E-value=11 Score=44.34 Aligned_cols=77 Identities=23% Similarity=0.466 Sum_probs=45.2
Q ss_pred hhhcccccccccccccccccccccccccccccccCCCCCCccchhhhhhhccccccccccccCCcccccchhhhhhccCC
Q 001607 138 ECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDS 217 (1045)
Q Consensus 138 ~c~c~~~~~~~~~~~~~v~c~~c~~w~h~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~ 217 (1045)
.|+|... +...-...|+.|+.|+-|-|.+|---...-. ........+...+..|.|..|...
T Consensus 131 C~iC~kf-D~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~-----------~G~s~~g~~g~~d~~f~C~~C~~~------ 192 (446)
T PF07227_consen 131 CCICSKF-DDNKNTCSWIGCDVCGHWCHLDCALRHELIG-----------TGPSVKGSIGTLDMQFHCRACGKT------ 192 (446)
T ss_pred ccccCCc-ccCCCCeeEEeccCCCceehhhhhccccccc-----------CCccCCCCCccCceEEEccCCCCh------
Confidence 3456553 2233345899999999999999953221100 000011122234778999999752
Q ss_pred CCCCCcEEEEeCchhHHHHHHHHHHhc
Q 001607 218 PVATGATLIVCPAPILAQWDAEITRHT 244 (1045)
Q Consensus 218 ~~~~~~tLIV~P~SLl~qW~~Ei~k~~ 244 (1045)
+-++..|.+-|....
T Consensus 193 ------------seLlG~vk~vf~~ca 207 (446)
T PF07227_consen 193 ------------SELLGFVKKVFQTCA 207 (446)
T ss_pred ------------hhHHHHHHHHHHHHH
Confidence 456777777776654
No 164
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=53.91 E-value=31 Score=44.24 Aligned_cols=87 Identities=18% Similarity=0.134 Sum_probs=51.7
Q ss_pred CcEEEEeCchhH----HHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCC
Q 001607 222 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 297 (1045)
Q Consensus 222 ~~tLIV~P~SLl----~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~ 297 (1045)
+.+-||+|+.-+ ..|...+-+|+ .+.|-+..+.... ......-.+||+-+|-..+.-|+-.+.-..
T Consensus 118 ~~VhVvT~NdyLA~RD~e~m~pvy~~L---GLsvg~i~~~~~~-------~err~aY~~DItYgTn~e~gFDyLRDnm~~ 187 (870)
T CHL00122 118 KGVHIVTVNDYLAKRDQEWMGQIYRFL---GLTVGLIQEGMSS-------EERKKNYLKDITYVTNSELGFDYLRDNMAL 187 (870)
T ss_pred CceEEEeCCHHHHHHHHHHHHHHHHHc---CCceeeeCCCCCh-------HHHHHhcCCCCEecCCccccccchhhccCc
Confidence 467888887655 38999999999 5888766543221 011223346888777665555443211100
Q ss_pred ccchhhhhhcccCCCccccccccccceEEecccccc
Q 001607 298 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 333 (1045)
Q Consensus 298 ~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~i 333 (1045)
.+.......++++|+||+..+
T Consensus 188 ---------------~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 188 ---------------SLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred ---------------ChHHhhccccceeeeecchhh
Confidence 011223446789999999876
No 165
>KOG4284 consensus DEAD box protein [Transcription]
Probab=53.29 E-value=57 Score=40.23 Aligned_cols=121 Identities=16% Similarity=0.174 Sum_probs=78.5
Q ss_pred CCCCCcEEEEeCchhH-HHHHHHHHHhcCC-CCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCC
Q 001607 218 PVATGATLIVCPAPIL-AQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSD 295 (1045)
Q Consensus 218 ~~~~~~tLIV~P~SLl-~qW~~Ei~k~~~~-~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~ 295 (1045)
....--.+||+|.-=+ -|-.+-|.+.+.. -+++..+|-|.... ..+...+.+..|||-|-..+..-+.-
T Consensus 90 ~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~------~~d~~rlk~~rIvIGtPGRi~qL~el--- 160 (980)
T KOG4284|consen 90 RSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAH------KLDLIRLKQTRIVIGTPGRIAQLVEL--- 160 (980)
T ss_pred ccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchh------hhhhhhhhhceEEecCchHHHHHHHh---
Confidence 3444567999998755 4777667666520 35888999887543 22445666777999999888775432
Q ss_pred CCccchhhhhhcccCCCccccccccccceEEeccccccCChHH---HHHHHHHHhcc-CcEEEEeccCCCCChhhh
Q 001607 296 RHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAA---AATEMALRLYA-KHRWCITGTPIQRKLDDL 367 (1045)
Q Consensus 296 ~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S---~~~~al~~L~a-~~Rw~LTGTPiqN~l~DL 367 (1045)
..+.--+-+..|||||..+-...| .....+..|+. +..+++|+|=-+| |+++
T Consensus 161 -------------------~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~n-Ldn~ 216 (980)
T KOG4284|consen 161 -------------------GAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRN-LDNL 216 (980)
T ss_pred -------------------cCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchh-HHHH
Confidence 113334567899999999865443 34455566654 5678899995443 4444
No 166
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=51.74 E-value=6.8 Score=42.43 Aligned_cols=48 Identities=38% Similarity=0.873 Sum_probs=37.1
Q ss_pred hhhhhhhccccccccccccccccccc--cc-ccccccccccCCCCCCccchhhhhhhccccccccccccCCcccccchhh
Q 001607 134 RERVECICGAVSESRKYKGLWVQCDI--CD-AWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 210 (1045)
Q Consensus 134 ~~~~~c~c~~~~~~~~~~~~~v~c~~--c~-~w~h~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~ 210 (1045)
.+.+.|.|..++. |.-|.||. |- .|.|-.|||...- ..+..+|+.|..
T Consensus 219 ~e~lYCfCqqvSy-----GqMVaCDn~nCkrEWFH~~CVGLk~p------------------------PKG~WYC~eCk~ 269 (271)
T COG5034 219 GEELYCFCQQVSY-----GQMVACDNANCKREWFHLECVGLKEP------------------------PKGKWYCPECKK 269 (271)
T ss_pred CceeEEEeccccc-----ccceecCCCCCchhheeccccccCCC------------------------CCCcEeCHHhHh
Confidence 3578899998875 67899977 53 4999999998653 356788999964
No 167
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.74 E-value=1.2e+02 Score=36.82 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=16.4
Q ss_pred CceeecCCCCcHHHHHHHHHH
Q 001607 82 GGILADEMGLGKTVELLACIF 102 (1045)
Q Consensus 82 GGILADEMGLGKTvq~LalI~ 102 (1045)
.=||.-..|.|||-.+..+..
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISL 57 (491)
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 447788899999998766653
No 168
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=49.89 E-value=26 Score=45.65 Aligned_cols=136 Identities=14% Similarity=0.185 Sum_probs=79.9
Q ss_pred CCCCcEEEEeCc-hhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccc--hhhhcCccEEEEehHHHHhhcccCCC
Q 001607 219 VATGATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMD--ISELVGADIVLTTYDVLKEDLSHDSD 295 (1045)
Q Consensus 219 ~~~~~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~--~~~l~~~dVVItTY~~l~~d~~~~~~ 295 (1045)
...|-||||.|. ||+. +.+.+.. +..++...+++........ ...+ ......+.|+-+|-+.+...-..
T Consensus 302 l~~gitvVISPL~SLm~---DQv~~L~-~~~I~a~~L~s~q~~~~~~-~i~q~l~~~~~~ikilYvtPE~v~~~~~l--- 373 (941)
T KOG0351|consen 302 LLGGVTVVISPLISLMQ---DQVTHLS-KKGIPACFLSSIQTAAERL-AILQKLANGNPIIKILYVTPEKVVASEGL--- 373 (941)
T ss_pred ccCCceEEeccHHHHHH---HHHHhhh-hcCcceeeccccccHHHHH-HHHHHHhCCCCeEEEEEeCHHHhhcccch---
Confidence 456789999996 5553 2333332 2357776666664321100 0001 11123577888888887764211
Q ss_pred CCccchhhhhhcccCCCcccccccc----ccceEEeccccccCChH---HHHHHHHHH----hccCcEEEEeccCCCCCh
Q 001607 296 RHEGDRRFMRFQKRYPVIPTLLTRI----FWWRICLDEAQMVESNA---AAATEMALR----LYAKHRWCITGTPIQRKL 364 (1045)
Q Consensus 296 ~~~~~~~~~r~~k~~~~~~s~L~~i----~w~rVIlDEAH~iKn~~---S~~~~al~~----L~a~~Rw~LTGTPiqN~l 364 (1045)
. ..+... .-.++|+||||.+.... -.-++.+.. ....--++||+|-..+--
T Consensus 374 --------~----------~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~ 435 (941)
T KOG0351|consen 374 --------L----------ESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVR 435 (941)
T ss_pred --------h----------hHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHH
Confidence 0 001111 14689999999986543 122333333 344568999999988888
Q ss_pred hhhhhcccccCCCCCC
Q 001607 365 DDLYGLLRFLKSSPFS 380 (1045)
Q Consensus 365 ~DL~~LL~FL~p~~~~ 380 (1045)
+|+...|+.-+|..|.
T Consensus 436 ~DIi~~L~l~~~~~~~ 451 (941)
T KOG0351|consen 436 EDVIRSLGLRNPELFK 451 (941)
T ss_pred HHHHHHhCCCCcceec
Confidence 9999999988887544
No 169
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=46.42 E-value=81 Score=40.79 Aligned_cols=40 Identities=15% Similarity=0.092 Sum_probs=29.5
Q ss_pred ccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCC
Q 001607 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 361 (1045)
Q Consensus 317 L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiq 361 (1045)
+....||++|+|||-.|--|- .+.-|.-..+++|-|-+.|
T Consensus 792 f~~R~FD~cIiDEASQI~lP~-----~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 792 FVNRQFDYCIIDEASQILLPL-----CLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred hhccccCEEEEccccccccch-----hhhhhhhcceEEEeccccc
Confidence 556679999999998885443 2344566788899897765
No 170
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=45.90 E-value=63 Score=40.05 Aligned_cols=55 Identities=13% Similarity=0.009 Sum_probs=37.7
Q ss_pred ccccccccceEEeccccccC-------ChHHHHHHHHHHhccCcEEEEeccCCCCChhhhhh
Q 001607 315 TLLTRIFWWRICLDEAQMVE-------SNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYG 369 (1045)
Q Consensus 315 s~L~~i~w~rVIlDEAH~iK-------n~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~ 369 (1045)
+.|....-.+|++||....- ++-+.+.+-........++++..||.......++.
T Consensus 128 ~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~ 189 (557)
T PF05876_consen 128 SNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIER 189 (557)
T ss_pred cccccCCcCEEEEechhhccccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHH
Confidence 45778888999999999873 23333333334445678999999998875444433
No 171
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=45.26 E-value=1.1e+02 Score=33.26 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=36.2
Q ss_pred cEEEEeCchhHHHHHHHHHHhcCCCC--CeEEEEeCCCCCccccccccch-----hhhcCccEEEEehHHHHh
Q 001607 223 ATLIVCPAPILAQWDAEITRHTRPGS--LKTCIYEGARNSSLSDTSIMDI-----SELVGADIVLTTYDVLKE 288 (1045)
Q Consensus 223 ~tLIV~P~SLl~qW~~Ei~k~~~~~~--l~v~vy~G~~~~~~~~~~~~~~-----~~l~~~dVVItTY~~l~~ 288 (1045)
=+-+|||.+++.|=.+-+...+. +- -+++.+.-++............ .-.....|++++-+.+.+
T Consensus 72 LvrviVpk~Ll~q~~~~L~~~lg-~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilS 143 (229)
T PF12340_consen 72 LVRVIVPKALLEQMRQMLRSRLG-GLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILS 143 (229)
T ss_pred EEEEEcCHHHHHHHHHHHHHHHH-HHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHH
Confidence 36788999999998888877763 22 2344444333322111100000 112456799998887654
No 172
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=45.19 E-value=52 Score=42.91 Aligned_cols=109 Identities=15% Similarity=0.135 Sum_probs=62.4
Q ss_pred cEEEEeC-chhH---HHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCc
Q 001607 223 ATLIVCP-APIL---AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 298 (1045)
Q Consensus 223 ~tLIV~P-~SLl---~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~ 298 (1045)
++=||.. ..|. ..|+.-+-.|. +|.|-+....... ......-.+||+-.|-..|.-|+-.+.-.
T Consensus 181 gVHvVTvNDYLA~RDaewm~p~y~fl---GLtVg~i~~~~~~-------~~Rr~aY~~DItYgTn~EfGFDYLRDnma-- 248 (1025)
T PRK12900 181 GVHVVTVNDYLAQRDKEWMNPVFEFH---GLSVGVILNTMRP-------EERREQYLCDITYGTNNEFGFDYLRDNMA-- 248 (1025)
T ss_pred CcEEEeechHhhhhhHHHHHHHHHHh---CCeeeeeCCCCCH-------HHHHHhCCCcceecCCCccccccchhccc--
Confidence 3444444 4444 48999999999 5888655332111 01123345788877766666554332111
Q ss_pred cchhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCChhhhh
Q 001607 299 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLY 368 (1045)
Q Consensus 299 ~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~ 368 (1045)
..+..+.+..+.+.||||+..|-= =.|+.-+++||. +.+....+|
T Consensus 249 -------------~~~~~~vqR~~~faIVDEvDSvLI-----------DeARTPLIISgp-~~~~~~~~y 293 (1025)
T PRK12900 249 -------------GTPEEMVQRDFYFAIVDEVDSVLI-----------DEARTPLIISGP-VPNADNSKF 293 (1025)
T ss_pred -------------cchhhhhccCCceEEEechhhhhh-----------ccccCceEEeCC-CCCcchHHH
Confidence 112335566789999999987621 136667899984 444333333
No 173
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=42.56 E-value=43 Score=31.71 Aligned_cols=62 Identities=21% Similarity=0.408 Sum_probs=39.7
Q ss_pred chhHHHHHhHHHHHHHH----HHHHHHHHHHHHhhhcCCChHhhhhccccccccCCCCCCcccccccc
Q 001607 786 SGLTYHIQSSLDQLEAS----RKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELD 849 (1045)
Q Consensus 786 ~gL~~~l~~~l~~L~~~----R~~~~~~l~~l~~~~~~p~~~~ve~~~~C~~c~~~~~~~~C~~C~~~ 849 (1045)
.+..-.+..+|++|++. +.+++.++..+....... ... .....|..|-....|.+|.+|.+.
T Consensus 36 ~a~R~~~k~~L~~LE~~~P~~k~~i~~s~~~~~~~~~~~-~~~-~~~~~C~~CG~pss~~iC~~C~l~ 101 (104)
T TIGR00269 36 LSVRARIRDFLYDLENKKPGVKFSVLRGFEKLIPLLKEL-SEQ-EDLRRCERCGEPTSGRICKACKFL 101 (104)
T ss_pred CCchHHHHHHHHHHHHHCcChHHHHHHHHHHHHHHhhcc-ccc-ccCCcCCcCcCcCCccccHhhhhh
Confidence 44555777777777764 455566665555432210 011 125679999988889999999875
No 174
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.51 E-value=74 Score=39.62 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=16.8
Q ss_pred eeecCCCCcHHHHHHHHHHh
Q 001607 84 ILADEMGLGKTVELLACIFA 103 (1045)
Q Consensus 84 ILADEMGLGKTvq~LalI~~ 103 (1045)
||.-..|.|||-.+.++.-.
T Consensus 42 Lf~Gp~G~GKtt~A~~lak~ 61 (576)
T PRK14965 42 LFTGARGVGKTSTARILAKA 61 (576)
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 67778999999999887754
No 175
>PF13173 AAA_14: AAA domain
Probab=42.50 E-value=27 Score=33.91 Aligned_cols=39 Identities=18% Similarity=0.116 Sum_probs=25.2
Q ss_pred cceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCC
Q 001607 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 361 (1045)
Q Consensus 322 w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiq 361 (1045)
-.+|++||+|++.+..... +.+..-....++++||.-..
T Consensus 62 ~~~i~iDEiq~~~~~~~~l-k~l~d~~~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDAL-KFLVDNGPNIKIILTGSSSS 100 (128)
T ss_pred CcEEEEehhhhhccHHHHH-HHHHHhccCceEEEEccchH
Confidence 3569999999998654322 22222224579999998543
No 176
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=41.76 E-value=63 Score=38.16 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=18.4
Q ss_pred cCceeecCCCCcHHHHHHHHHHh
Q 001607 81 FGGILADEMGLGKTVELLACIFA 103 (1045)
Q Consensus 81 rGGILADEMGLGKTvq~LalI~~ 103 (1045)
++=|+.-..|.|||..+.++...
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~ 59 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAA 59 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 34468889999999999888754
No 177
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=41.61 E-value=63 Score=42.32 Aligned_cols=110 Identities=16% Similarity=0.119 Sum_probs=62.2
Q ss_pred EEEEeC-chhH---HHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCcc
Q 001607 224 TLIVCP-APIL---AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 299 (1045)
Q Consensus 224 tLIV~P-~SLl---~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~ 299 (1045)
+-||.. ..|. ..|+..+-+|. .|.|-+.....-. .......-.+||+-+|-..|.-|+-.+.-.
T Consensus 213 VHvVTVNDYLA~RDaewmgply~fL---GLsvg~i~~~~~~------~~~rr~aY~~DItYgTn~EfGFDYLRDnm~--- 280 (1112)
T PRK12901 213 VHVVTVNDYLAKRDSEWMGPLYEFH---GLSVDCIDKHQPN------SEARRKAYNADITYGTNNEFGFDYLRDNMA--- 280 (1112)
T ss_pred cEEEEechhhhhccHHHHHHHHHHh---CCceeecCCCCCC------HHHHHHhCCCcceecCCCccccccchhccc---
Confidence 344444 4444 48999999999 5888665432100 001222345788877766666554332111
Q ss_pred chhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCChhhhhh
Q 001607 300 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYG 369 (1045)
Q Consensus 300 ~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~ 369 (1045)
..+..+.+..+.+.|+||+..|-= =.|+--+++||. ..+.-.++|.
T Consensus 281 ------------~~~~~~vqR~~~fAIVDEvDSILI-----------DEARTPLIISGp-~~~~~~~~y~ 326 (1112)
T PRK12901 281 ------------HSPEDLVQRKHNYAIVDEVDSVLI-----------DDARTPLIISGP-VPKGDDQEFE 326 (1112)
T ss_pred ------------cchHhhhCcCCceeEeechhhhhh-----------ccccCcEEEeCC-CCCccHHHHH
Confidence 011234556788999999987621 135667899985 4443334443
No 178
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=41.20 E-value=1.6e+02 Score=38.20 Aligned_cols=65 Identities=12% Similarity=0.042 Sum_probs=41.4
Q ss_pred cCccEEEEehHHHHhhcccCCCCCccchhhhhhcccCCCccccccccccceEEeccccccCChHHHHHHHHHHh----cc
Q 001607 274 VGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL----YA 349 (1045)
Q Consensus 274 ~~~dVVItTY~~l~~d~~~~~~~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~S~~~~al~~L----~a 349 (1045)
....|+++|-.++..|+-. ..+.--....||+||||++-...+- +-.++.. +.
T Consensus 6 ~~ggi~~~T~rIl~~DlL~----------------------~ri~~~~itgiiv~~Ahr~~~~~~e-aFI~rlyr~~n~~ 62 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLT----------------------GIIPPELITGILVLRADRIIESSQE-AFILRLYRQKNKT 62 (814)
T ss_pred hcCCEEEEechhhHhHHhc----------------------CCCCHHHccEEEEeecccccccccH-HHHHHHHHHhCCC
Confidence 4456899999999988732 1122224677999999999644332 2233333 24
Q ss_pred CcEEEEeccCCC
Q 001607 350 KHRWCITGTPIQ 361 (1045)
Q Consensus 350 ~~Rw~LTGTPiq 361 (1045)
.+..++|..|-.
T Consensus 63 gfIkafSdsP~~ 74 (814)
T TIGR00596 63 GFIKAFSDNPEA 74 (814)
T ss_pred cceEEecCCCcc
Confidence 567788988854
No 179
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=41.14 E-value=48 Score=42.11 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=40.0
Q ss_pred CcE-EEEeCchhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccc-cccccchhhhcCccEEEEehHHHHh
Q 001607 222 GAT-LIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLS-DTSIMDISELVGADIVLTTYDVLKE 288 (1045)
Q Consensus 222 ~~t-LIV~P~SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~-~~~~~~~~~l~~~dVVItTY~~l~~ 288 (1045)
|.+ |+.+ -.=.++=.+|+.+++ |..+++.+++....+.. ..........+.+||+|-|--....
T Consensus 482 gs~~L~~~-G~GterieeeL~~~F--P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG 547 (730)
T COG1198 482 GSEHLRAV-GPGTERIEEELKRLF--PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKG 547 (730)
T ss_pred CCCeeEEe-cccHHHHHHHHHHHC--CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcC
Confidence 444 4443 334566688899999 89999999987554321 1112233345679999977655444
No 180
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.35 E-value=76 Score=39.06 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=15.8
Q ss_pred eeecCCCCcHHHHHHHHHHh
Q 001607 84 ILADEMGLGKTVELLACIFA 103 (1045)
Q Consensus 84 ILADEMGLGKTvq~LalI~~ 103 (1045)
|+.-..|.|||..+..+...
T Consensus 42 Lf~Gp~G~GKTt~A~~lAk~ 61 (527)
T PRK14969 42 LFTGTRGVGKTTLARILAKS 61 (527)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 67788999999877766543
No 181
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=38.25 E-value=1.5e+02 Score=33.77 Aligned_cols=109 Identities=14% Similarity=0.080 Sum_probs=65.2
Q ss_pred CCCcEEEEeCch----hHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCC
Q 001607 220 ATGATLIVCPAP----ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSD 295 (1045)
Q Consensus 220 ~~~~tLIV~P~S----Ll~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~ 295 (1045)
..--.+|+||.- -.+|-..|+.+|+ .++|.+-.|....+.. -..-.....++|.|-..+..-....
T Consensus 152 ~~IQ~~ilVPtrelALQtSqvc~~lskh~---~i~vmvttGGT~lrDD-----I~Rl~~~VH~~vgTPGRIlDL~~Kg-- 221 (459)
T KOG0326|consen 152 NVIQAIILVPTRELALQTSQVCKELSKHL---GIKVMVTTGGTSLRDD-----IMRLNQTVHLVVGTPGRILDLAKKG-- 221 (459)
T ss_pred cceeEEEEeecchhhHHHHHHHHHHhccc---CeEEEEecCCcccccc-----eeeecCceEEEEcCChhHHHHHhcc--
Confidence 334679999964 2468899999999 5999998887543210 0111133557887777665433210
Q ss_pred CCccchhhhhhcccCCCccccccccccceEEeccccccCChH--HHHHHHHHHhcc-CcEEEEecc
Q 001607 296 RHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGT 358 (1045)
Q Consensus 296 ~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~--S~~~~al~~L~a-~~Rw~LTGT 358 (1045)
.-.--+-..+|+|||..+-+.. ....+.+.-|+. +.-++.|+|
T Consensus 222 --------------------Va~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySAT 267 (459)
T KOG0326|consen 222 --------------------VADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSAT 267 (459)
T ss_pred --------------------cccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecc
Confidence 0111134578999999987665 233344444543 445666776
No 182
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=38.15 E-value=51 Score=38.66 Aligned_cols=105 Identities=22% Similarity=0.154 Sum_probs=66.3
Q ss_pred CcEEEEeCchhH-HH---HHHHHHHhcCCCCCeEE-EEeCCCCCccccccccchhhh-cCccEEEEehHHHHhhcccCCC
Q 001607 222 GATLIVCPAPIL-AQ---WDAEITRHTRPGSLKTC-IYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSD 295 (1045)
Q Consensus 222 ~~tLIV~P~SLl-~q---W~~Ei~k~~~~~~l~v~-vy~G~~~~~~~~~~~~~~~~l-~~~dVVItTY~~l~~d~~~~~~ 295 (1045)
-..||+.|+.=+ .| -..++.+++ .++.. +|+|.+.. .+...+ .+.||||.|-..+..-...
T Consensus 91 ~RalilsptreLa~qtlkvvkdlgrgt---~lr~s~~~ggD~~e-------eqf~~l~~npDii~ATpgr~~h~~ve--- 157 (529)
T KOG0337|consen 91 LRALILSPTRELALQTLKVVKDLGRGT---KLRQSLLVGGDSIE-------EQFILLNENPDIIIATPGRLLHLGVE--- 157 (529)
T ss_pred cceeeccCcHHHHHHHHHHHHHhcccc---chhhhhhcccchHH-------HHHHHhccCCCEEEecCceeeeeehh---
Confidence 478999998643 34 445555555 56665 56665332 122233 3689999887766442211
Q ss_pred CCccchhhhhhcccCCCccccccccccceEEeccccccCC--hHHHHHHHHHHhcc-CcEEEEecc
Q 001607 296 RHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES--NAAAATEMALRLYA-KHRWCITGT 358 (1045)
Q Consensus 296 ~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn--~~S~~~~al~~L~a-~~Rw~LTGT 358 (1045)
-.|.--.-.+||+|||.+|-. ..-+..+.+.+++. .-.+++|||
T Consensus 158 -------------------m~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSat 204 (529)
T KOG0337|consen 158 -------------------MTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSAT 204 (529)
T ss_pred -------------------eeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEecc
Confidence 012233457899999999743 34677778888864 468899999
No 183
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=38.03 E-value=73 Score=41.34 Aligned_cols=20 Identities=20% Similarity=0.198 Sum_probs=16.4
Q ss_pred eeecCCCCcHHHHHHHHHHh
Q 001607 84 ILADEMGLGKTVELLACIFA 103 (1045)
Q Consensus 84 ILADEMGLGKTvq~LalI~~ 103 (1045)
||.-..|.|||..+..+.-.
T Consensus 41 Lf~Gp~G~GKTt~A~~lAr~ 60 (824)
T PRK07764 41 LFSGPRGCGKTSSARILARS 60 (824)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 67778999999998877644
No 184
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=37.73 E-value=58 Score=41.14 Aligned_cols=31 Identities=16% Similarity=0.103 Sum_probs=24.1
Q ss_pred CcEEEEeCchh-HHHHHHHHHHhcCCCCCeEEEE
Q 001607 222 GATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIY 254 (1045)
Q Consensus 222 ~~tLIV~P~SL-l~qW~~Ei~k~~~~~~l~v~vy 254 (1045)
+|+|||+|.-. ..||.+|++.|+ |.-.|..|
T Consensus 55 ~p~Lvi~~n~~~A~ql~~el~~f~--p~~~V~~f 86 (655)
T TIGR00631 55 RPTLVIAHNKTLAAQLYNEFKEFF--PENAVEYF 86 (655)
T ss_pred CCEEEEECCHHHHHHHHHHHHHhC--CCCeEEEE
Confidence 58999999865 579999999999 44445544
No 185
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=37.59 E-value=17 Score=44.90 Aligned_cols=56 Identities=21% Similarity=0.310 Sum_probs=37.5
Q ss_pred CCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCccchhhhhhcccCCCccccccccccceEEe
Q 001607 248 SLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICL 327 (1045)
Q Consensus 248 ~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIl 327 (1045)
.++.+.|+|++. ....+++|+-.|..|-.+...- +.=..+.=.+||+
T Consensus 308 ~~~~CPYY~SR~------------avp~aqlV~LPYQ~LL~~stR~---------------------slgI~LkdsIvIi 354 (821)
T KOG1133|consen 308 ELRGCPYYASRR------------AVPQAQLVTLPYQLLLHESTRK---------------------SLGISLKDSIVII 354 (821)
T ss_pred hcCCCCchhhhh------------ccccccEEeccHHHHHhHHHHH---------------------hcCccccccEEEE
Confidence 467777887743 3456899999999998764210 0111233467999
Q ss_pred ccccccCCh
Q 001607 328 DEAQMVESN 336 (1045)
Q Consensus 328 DEAH~iKn~ 336 (1045)
||||++-+.
T Consensus 355 DEAHNlidt 363 (821)
T KOG1133|consen 355 DEAHNLIDT 363 (821)
T ss_pred echhHHHHH
Confidence 999998653
No 186
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=37.42 E-value=61 Score=41.83 Aligned_cols=138 Identities=14% Similarity=0.087 Sum_probs=75.0
Q ss_pred CCcccccchhhhhhccCCCCCCCcEEEEeCc-hhHHHHHHHHHHhcCCCCCeE-EEEeCCCCCccccccccchhh--hcC
Q 001607 200 DGEHICQWCDELIEATDSPVATGATLIVCPA-PILAQWDAEITRHTRPGSLKT-CIYEGARNSSLSDTSIMDISE--LVG 275 (1045)
Q Consensus 200 ~~~~~c~~c~~~~~~~~~~~~~~~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v-~vy~G~~~~~~~~~~~~~~~~--l~~ 275 (1045)
...|+|+.|.+.. ......+-++-|+|. +++.|=..++..-+..+.+.- ...-|.-. .... .-.
T Consensus 538 GKTfisfY~iEKV---LResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~lt---------qEYsinp~n 605 (1330)
T KOG0949|consen 538 GKTFISFYAIEKV---LRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLT---------QEYSINPWN 605 (1330)
T ss_pred CceeccHHHHHHH---HhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhh---------HHhcCCchh
Confidence 5567777776431 112344556667774 566666666554442122111 11112100 1111 235
Q ss_pred ccEEEEehHHHHhhcccCCCCCccchhhhhhcccCCCcccc-ccccccceEEeccccccCChH-HHHHHHHHHhccCcEE
Q 001607 276 ADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTL-LTRIFWWRICLDEAQMVESNA-AAATEMALRLYAKHRW 353 (1045)
Q Consensus 276 ~dVVItTY~~l~~d~~~~~~~~~~~~~~~r~~k~~~~~~s~-L~~i~w~rVIlDEAH~iKn~~-S~~~~al~~L~a~~Rw 353 (1045)
+.|.||--+.+..-+-.. |.+ -..-+-.+||+||.|.+.|.. +....-+..+-.---+
T Consensus 606 CQVLITvPecleslLlsp--------------------p~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~CP~L 665 (1330)
T KOG0949|consen 606 CQVLITVPECLESLLLSP--------------------PHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIPCPFL 665 (1330)
T ss_pred ceEEEEchHHHHHHhcCc--------------------hhhhhhhhcceEEEechhhhccccccchHHHHHHHhcCCCee
Confidence 678898888887755320 000 011235689999999999876 5555555555556678
Q ss_pred EEeccCCCCChhhhhhcc
Q 001607 354 CITGTPIQRKLDDLYGLL 371 (1045)
Q Consensus 354 ~LTGTPiqN~l~DL~~LL 371 (1045)
+|++| ++++..++..+
T Consensus 666 ~LSAT--igN~~l~qkWl 681 (1330)
T KOG0949|consen 666 VLSAT--IGNPNLFQKWL 681 (1330)
T ss_pred EEecc--cCCHHHHHHHH
Confidence 99999 45555554433
No 187
>PHA00673 acetyltransferase domain containing protein
Probab=37.40 E-value=55 Score=33.39 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=36.3
Q ss_pred cceEEeccccccCChHHHHHHHHHHh---ccCcEEEEeccCCCCChh
Q 001607 322 WWRICLDEAQMVESNAAAATEMALRL---YAKHRWCITGTPIQRKLD 365 (1045)
Q Consensus 322 w~rVIlDEAH~iKn~~S~~~~al~~L---~a~~Rw~LTGTPiqN~l~ 365 (1045)
-+-|++|+.|+=+.-.++..+.+... ..-++|-+|+||-.|.++
T Consensus 88 Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 88 TESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 56799999999998888877776553 467899999999999864
No 188
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.22 E-value=1.9e+02 Score=35.41 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=16.6
Q ss_pred eeecCCCCcHHHHHHHHHHh
Q 001607 84 ILADEMGLGKTVELLACIFA 103 (1045)
Q Consensus 84 ILADEMGLGKTvq~LalI~~ 103 (1045)
+|.-..|.|||..+.++...
T Consensus 40 Lf~GppGtGKTTlA~~lA~~ 59 (504)
T PRK14963 40 LFSGPRGVGKTTTARLIAMA 59 (504)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 67778999999999887654
No 189
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=36.66 E-value=66 Score=36.16 Aligned_cols=21 Identities=24% Similarity=0.131 Sum_probs=16.2
Q ss_pred CceeecCCCCcHHHHHHHHHH
Q 001607 82 GGILADEMGLGKTVELLACIF 102 (1045)
Q Consensus 82 GGILADEMGLGKTvq~LalI~ 102 (1045)
+-+|--++|.|||..|-++..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 346778999999998866653
No 190
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=36.20 E-value=49 Score=37.90 Aligned_cols=55 Identities=20% Similarity=0.186 Sum_probs=37.2
Q ss_pred ccccccceEEeccccccCChH---HHHHHHH----HHhccCcEEEEeccCCCCChhhhhhcc
Q 001607 317 LTRIFWWRICLDEAQMVESNA---AAATEMA----LRLYAKHRWCITGTPIQRKLDDLYGLL 371 (1045)
Q Consensus 317 L~~i~w~rVIlDEAH~iKn~~---S~~~~al----~~L~a~~Rw~LTGTPiqN~l~DL~~LL 371 (1045)
+..-.|.+|.+||.|...-.. -.-++++ +.++...-+.||+|...+-++|.-.+|
T Consensus 211 ~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il 272 (695)
T KOG0353|consen 211 LEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDIL 272 (695)
T ss_pred hhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHH
Confidence 444567889999999753221 1112333 345667789999999999888876665
No 191
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=36.13 E-value=30 Score=30.11 Aligned_cols=17 Identities=6% Similarity=-0.228 Sum_probs=16.1
Q ss_pred cCCcchhhhhh-hhhhcC
Q 001607 602 EILPMVANCAT-ELSQNE 618 (1045)
Q Consensus 602 ~~np~~~~QA~-R~hriG 618 (1045)
.|++....|+. ||+|.|
T Consensus 61 ~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 61 PWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp ESSHHHHHHHHTTSSTTT
T ss_pred CCCHHHHHHHhhcCCCCC
Confidence 69999999999 999998
No 192
>CHL00181 cbbX CbbX; Provisional
Probab=35.92 E-value=88 Score=35.26 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=16.1
Q ss_pred eeecCCCCcHHHHHHHHHH
Q 001607 84 ILADEMGLGKTVELLACIF 102 (1045)
Q Consensus 84 ILADEMGLGKTvq~LalI~ 102 (1045)
+|-=.+|.|||..|-++..
T Consensus 63 ll~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 63 SFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 6778999999999988754
No 193
>PF08824 Serine_rich: Serine rich protein interaction domain; InterPro: IPR014928 This is a serine rich protein that is found in the docking protein p130(cas) (Crk-associated substrate). The protein folds into a four helix bundle which is associated with protein-protein interactions []. ; PDB: 2L81_A 1Z23_A.
Probab=34.73 E-value=77 Score=32.52 Aligned_cols=118 Identities=19% Similarity=0.226 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHhhhh-cccCChhHHHHHHHhhcCCCchHHHHHHHHHHhhcccccc-ccccccccccCcchhHHH
Q 001607 714 VAQQEFRKSYMQVCNALDDR-EKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKS-RALRTASRYRSISGLTYH 791 (1045)
Q Consensus 714 ~~~~~~~~~~~~v~~~~~~~-~~~~~~ww~~~l~~~~~~~~~~~~l~~~i~~~~~~~~~~~-~~~~~~~~~~~~~gL~~~ 791 (1045)
+|-..+.+-.++|....+.. +.-.+.|=. ...++.+=+.-..-+.+|+..+.....+. +...-+.+..+ ++|.--
T Consensus 5 ~A~e~L~~LQ~~v~~sVs~L~~fvs~~WR~--~~~le~~i~~Ir~a~~~v~~sl~~fl~FArga~~NA~~~~D-~~L~~k 81 (159)
T PF08824_consen 5 AAMETLSRLQQEVESSVSNLMSFVSSNWRS--PESLERHINEIRAAVDRVRASLREFLDFARGALANASNLSD-RNLQAK 81 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSTT---CCCHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCHTTTTS--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--hHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccccc-hhHHHH
Confidence 34444444455555544442 112244432 33345554444456677777777665543 22223334444 899999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhh----------cCCChHhhhhccccccc
Q 001607 792 IQSSLDQLEASRKTLLDRLLEIDQTM----------EKPKEEDMDRMRHCRIC 834 (1045)
Q Consensus 792 l~~~l~~L~~~R~~~~~~l~~l~~~~----------~~p~~~~ve~~~~C~~c 834 (1045)
|..+|..|+.+++.+.+.-++|+..- .+++++++++..+|..-
T Consensus 82 L~~qLq~l~ds~qiL~~~~q~Ld~~~Wsl~~La~~k~~~~~DdLDrfVmvaR~ 134 (159)
T PF08824_consen 82 LRRQLQPLEDSYQILLQTSQALDSCNWSLDVLARDKPQNKPDDLDRFVMVART 134 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHTT--SS-TCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHhcCCCCCCcchHHHHHHHHHh
Confidence 99999999999999999998886421 22466788887777553
No 194
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=34.33 E-value=1.1e+02 Score=39.60 Aligned_cols=67 Identities=4% Similarity=-0.039 Sum_probs=39.4
Q ss_pred HHHHHccCCCCCCCCcccccCC------CCCHHHHHHHHHHHHHHhhhhhcchHHHhhhhHHHHHHHHHhHHHH
Q 001607 501 KLRQACCHPQVGSSGLRSLQQS------PLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQA 568 (1045)
Q Consensus 501 rLRqiC~HP~L~~~~~~~~~~~------~~t~~elL~~Ll~~~~~e~~~~~rkvlifsq~~a~L~ii~~~~~~a 568 (1045)
.++++-+.+-+.-....+..+. -.|.++-...+++.+. ++.+.++-+||.......-..|...+...
T Consensus 377 Ef~~iY~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~-~~~~~gqPVLVgT~SIe~SE~ls~~L~~~ 449 (925)
T PRK12903 377 EFIDIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVK-RVHKKGQPILIGTAQVEDSETLHELLLEA 449 (925)
T ss_pred HHHHHhCCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHH-HHHhcCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 4566666665543333332211 1255566666665554 34456789998888877777777666554
No 195
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=33.76 E-value=87 Score=40.72 Aligned_cols=57 Identities=30% Similarity=0.513 Sum_probs=33.7
Q ss_pred EEEEeCch-hHHHHHHHHHHhcCCCCCeE-EEEeCCCCCccccccccchhhh-cCccEEEEehHHHH
Q 001607 224 TLIVCPAP-ILAQWDAEITRHTRPGSLKT-CIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLK 287 (1045)
Q Consensus 224 tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~v-~vy~G~~~~~~~~~~~~~~~~l-~~~dVVItTY~~l~ 287 (1045)
.||+||.- +..|-.+++.+|+..-++++ .+|.|..... ....+ ...+|||.|-..+.
T Consensus 441 ~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~-------qiaelkRg~eIvV~tpGRmi 500 (997)
T KOG0334|consen 441 ALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQ-------QIAELKRGAEIVVCTPGRMI 500 (997)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHH-------HHHHHhcCCceEEeccchhh
Confidence 58889975 55677777777665445555 5666664321 12222 22778888766544
No 196
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=32.86 E-value=22 Score=40.66 Aligned_cols=41 Identities=27% Similarity=0.187 Sum_probs=29.4
Q ss_pred cceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCCCh
Q 001607 322 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKL 364 (1045)
Q Consensus 322 w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN~l 364 (1045)
=..||+||||+ ..-.+.-..+.+|-...+..+||.+.|=++
T Consensus 244 dAfVIlDEaQN--tT~~QmKMfLTRiGf~skmvItGD~tQiDL 284 (348)
T COG1702 244 DAFVILDEAQN--TTVGQMKMFLTRIGFESKMVITGDITQIDL 284 (348)
T ss_pred CeEEEEecccc--cchhhhceeeeeecCCceEEEEcCcccccC
Confidence 45799999998 222233334456888999999999988654
No 197
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=31.53 E-value=2e+02 Score=32.29 Aligned_cols=110 Identities=19% Similarity=0.133 Sum_probs=67.4
Q ss_pred CcEEEEeCchhH-HHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhh-cCccEEEEehHHHHhhcccCCCCCcc
Q 001607 222 GATLIVCPAPIL-AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSDRHEG 299 (1045)
Q Consensus 222 ~~tLIV~P~SLl-~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l-~~~dVVItTY~~l~~d~~~~~~~~~~ 299 (1045)
--.||+.|.--+ .|-.+-+.....+-++.++..-|.+.... +...+ -...+|.-|-..+-..+..
T Consensus 96 tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~ge------dikkld~G~hvVsGtPGrv~dmikr------- 162 (400)
T KOG0328|consen 96 TQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGE------DIKKLDYGQHVVSGTPGRVLDMIKR------- 162 (400)
T ss_pred eeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccch------hhhhhcccceEeeCCCchHHHHHHh-------
Confidence 458999998644 57666666655444566666666544211 11111 1223555555544433321
Q ss_pred chhhhhhcccCCCccccccccccceEEeccccccCCh--HHHHHHHHHHhc-cCcEEEEeccC
Q 001607 300 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLY-AKHRWCITGTP 359 (1045)
Q Consensus 300 ~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~--~S~~~~al~~L~-a~~Rw~LTGTP 359 (1045)
..|.-..-.++|||||..+-|. ..+.+...+.|+ .-..+++|+|-
T Consensus 163 ---------------~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATl 210 (400)
T KOG0328|consen 163 ---------------RSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATL 210 (400)
T ss_pred ---------------ccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccC
Confidence 1244455678999999997554 477888888887 66788899993
No 198
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=30.97 E-value=2.8e+02 Score=34.68 Aligned_cols=21 Identities=29% Similarity=0.199 Sum_probs=17.2
Q ss_pred ceeecCCCCcHHHHHHHHHHh
Q 001607 83 GILADEMGLGKTVELLACIFA 103 (1045)
Q Consensus 83 GILADEMGLGKTvq~LalI~~ 103 (1045)
=|+.-..|.|||..|.++.-.
T Consensus 41 ~Lf~GP~GvGKTTlA~~lAk~ 61 (605)
T PRK05896 41 YIFSGPRGIGKTSIAKIFAKA 61 (605)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 367788999999999888754
No 199
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.79 E-value=1.1e+02 Score=37.59 Aligned_cols=53 Identities=13% Similarity=0.061 Sum_probs=33.9
Q ss_pred chhHHHHHHHHHHhcCCCCCeEEEEeCCCCCcccc-ccccchhhhcCccEEEEehH
Q 001607 230 APILAQWDAEITRHTRPGSLKTCIYEGARNSSLSD-TSIMDISELVGADIVLTTYD 284 (1045)
Q Consensus 230 ~SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~-~~~~~~~~l~~~dVVItTY~ 284 (1045)
-.=.+...+|+.+.+ |..++..+++....+... ......-..+++||+|.|--
T Consensus 268 g~Gte~~~e~l~~~f--p~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~ 321 (505)
T TIGR00595 268 GYGTEQVEEELAKLF--PGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQM 321 (505)
T ss_pred cccHHHHHHHHHhhC--CCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcc
Confidence 344678889999999 789999999875432210 11122223356889987754
No 200
>PLN03025 replication factor C subunit; Provisional
Probab=30.38 E-value=74 Score=36.26 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=34.1
Q ss_pred ccceEEeccccccCChHHHH-HHHHHHhccCcEEEEeccCCCCChhhhhhcccccCCCCC
Q 001607 321 FWWRICLDEAQMVESNAAAA-TEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379 (1045)
Q Consensus 321 ~w~rVIlDEAH~iKn~~S~~-~~al~~L~a~~Rw~LTGTPiqN~l~DL~~LL~FL~p~~~ 379 (1045)
.|..||+||+|.+-...... .+.+.......++++++++...-+..|-+-...+...++
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l 158 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRL 158 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCC
Confidence 47899999999985322111 112222245567888888766555555554444433333
No 201
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=28.76 E-value=19 Score=29.30 Aligned_cols=15 Identities=47% Similarity=1.247 Sum_probs=9.7
Q ss_pred ccccccccccccccc
Q 001607 153 LWVQCDICDAWQHAD 167 (1045)
Q Consensus 153 ~~v~c~~c~~w~h~~ 167 (1045)
.||||+.|..|....
T Consensus 2 ~WVQCd~C~KWR~lp 16 (50)
T PF07496_consen 2 YWVQCDSCLKWRRLP 16 (50)
T ss_dssp EEEE-TTT--EEEE-
T ss_pred eEEECCCCCceeeCC
Confidence 499999999999763
No 202
>PF13245 AAA_19: Part of AAA domain
Probab=28.70 E-value=82 Score=27.96 Aligned_cols=19 Identities=37% Similarity=0.305 Sum_probs=15.2
Q ss_pred ecCCCCcHHHHHHHHHHhc
Q 001607 86 ADEMGLGKTVELLACIFAH 104 (1045)
Q Consensus 86 ADEMGLGKTvq~LalI~~~ 104 (1045)
-=-+|-|||-+++.++...
T Consensus 16 ~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 16 QGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 3469999999998888663
No 203
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=28.64 E-value=1.4e+02 Score=36.96 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=17.0
Q ss_pred eeecCCCCcHHHHHHHHHHh
Q 001607 84 ILADEMGLGKTVELLACIFA 103 (1045)
Q Consensus 84 ILADEMGLGKTvq~LalI~~ 103 (1045)
|+.-+.|.|||..+.++.-.
T Consensus 42 Lf~Gp~G~GKTt~Ar~lAk~ 61 (563)
T PRK06647 42 IFSGPRGVGKTSSARAFARC 61 (563)
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 67789999999999887754
No 204
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=28.55 E-value=47 Score=38.48 Aligned_cols=40 Identities=25% Similarity=0.182 Sum_probs=29.6
Q ss_pred ccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCCC
Q 001607 321 FWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQR 362 (1045)
Q Consensus 321 ~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiqN 362 (1045)
+=..||+||||++.-. ..--.+.+.-...++++||-|-|-
T Consensus 351 ~~~FiIIDEaQNLTph--eikTiltR~G~GsKIVl~gd~aQi 390 (436)
T COG1875 351 PDSFIIIDEAQNLTPH--ELKTILTRAGEGSKIVLTGDPAQI 390 (436)
T ss_pred ccceEEEehhhccCHH--HHHHHHHhccCCCEEEEcCCHHHc
Confidence 3457999999999633 233345566778999999999874
No 205
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=28.54 E-value=1.1e+02 Score=39.86 Aligned_cols=89 Identities=17% Similarity=0.242 Sum_probs=52.8
Q ss_pred CCcEEEEeCc-hhHHHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCcc
Q 001607 221 TGATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 299 (1045)
Q Consensus 221 ~~~tLIV~P~-SLl~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~ 299 (1045)
.+.+.+|+|. +++.-=.+.+.+....+++++.-..|.... ++....+.+++|||.+..-......
T Consensus 973 ~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~p--------d~~~v~~~~~~ittpek~dgi~Rsw------ 1038 (1230)
T KOG0952|consen 973 GSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTP--------DVKAVREADIVITTPEKWDGISRSW------ 1038 (1230)
T ss_pred CccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCC--------ChhheecCceEEcccccccCccccc------
Confidence 3678888985 444322222233323357888888776432 4566788999999998764432110
Q ss_pred chhhhhhcccCCCccccccccccceEEeccccccCChH
Q 001607 300 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 337 (1045)
Q Consensus 300 ~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~ 337 (1045)
..++| +. ....+|+||.|.++...
T Consensus 1039 ------~~r~~------v~--~v~~iv~de~hllg~~r 1062 (1230)
T KOG0952|consen 1039 ------QTRKY------VQ--SVSLIVLDEIHLLGEDR 1062 (1230)
T ss_pred ------cchhh------hc--cccceeecccccccCCC
Confidence 00111 11 24568999999998654
No 206
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=27.27 E-value=2.9e+02 Score=35.96 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=22.4
Q ss_pred hhhh-hhhhcCCCCceEEEeccccCCcc
Q 001607 609 NCAT-ELSQNEQHFPGCSEKAFKIHSIE 635 (1045)
Q Consensus 609 ~QA~-R~hriGq~~~v~~~r~~~~~t~e 635 (1045)
..|. |+-|-|.+.++..||+.+++..+
T Consensus 363 AsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 363 ASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred hhhhhhccccccCCCceEEEecCHHHHH
Confidence 3456 99999999999999999985544
No 207
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.02 E-value=3.1e+02 Score=34.52 Aligned_cols=58 Identities=12% Similarity=0.116 Sum_probs=29.5
Q ss_pred ccceEEeccccccCChHHHHHHHHHHh---ccCcEEEEeccCCCCChhhhhhcccccCCCCCC
Q 001607 321 FWWRICLDEAQMVESNAAAATEMALRL---YAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 380 (1045)
Q Consensus 321 ~w~rVIlDEAH~iKn~~S~~~~al~~L---~a~~Rw~LTGTPiqN~l~DL~~LL~FL~p~~~~ 380 (1045)
.+.+||+||+|++... .....++.| .....++++.|-...-+.-|-+-...+...++.
T Consensus 121 ~~KVvIIdea~~Ls~~--a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls 181 (614)
T PRK14971 121 KYKIYIIDEVHMLSQA--AFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQ 181 (614)
T ss_pred CcEEEEEECcccCCHH--HHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCC
Confidence 5778999999999432 222223333 344566676663322223333333333334443
No 208
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=26.42 E-value=2.6e+02 Score=37.54 Aligned_cols=102 Identities=14% Similarity=0.230 Sum_probs=65.3
Q ss_pred CcEEEEeCchhH-----HHHHHHHHHhcCCCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCC
Q 001607 222 GATLIVCPAPIL-----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDR 296 (1045)
Q Consensus 222 ~~tLIV~P~SLl-----~qW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~ 296 (1045)
+...-|+|...+ .-|..-|.+-. .+++....|... .....+...+|+|.|.+.+..-- +
T Consensus 1187 ~~~vyi~p~~~i~~~~~~~w~~~f~~~~---G~~~~~l~ge~s--------~~lkl~~~~~vii~tpe~~d~lq-~---- 1250 (1674)
T KOG0951|consen 1187 GRAVYIAPLEEIADEQYRDWEKKFSKLL---GLRIVKLTGETS--------LDLKLLQKGQVIISTPEQWDLLQ-S---- 1250 (1674)
T ss_pred eEEEEecchHHHHHHHHHHHHHhhcccc---CceEEecCCccc--------cchHHhhhcceEEechhHHHHHh-h----
Confidence 567778887754 45777776654 577777777643 24556677889999988765421 0
Q ss_pred CccchhhhhhcccCCCccccccccccceEEeccccccCChH--------HHHHHHHHHhccCcEEEEeccCCCC
Q 001607 297 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--------AAATEMALRLYAKHRWCITGTPIQR 362 (1045)
Q Consensus 297 ~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~--------S~~~~al~~L~a~~Rw~LTGTPiqN 362 (1045)
. -.-+..|.||.|++.... | ...++..+-...|++--.|-+.|
T Consensus 1251 --------------------i--Q~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lan 1301 (1674)
T KOG0951|consen 1251 --------------------I--QQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLAN 1301 (1674)
T ss_pred --------------------h--hhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehhhcc
Confidence 1 123668999999998543 3 44555666666666554454444
No 209
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=25.18 E-value=4.9e+02 Score=30.79 Aligned_cols=57 Identities=7% Similarity=0.045 Sum_probs=36.6
Q ss_pred ccceEEeccccccCChHHHHHH---HHHHhc--cCcEEEEeccCCCCChhhhhhcccccCCC
Q 001607 321 FWWRICLDEAQMVESNAAAATE---MALRLY--AKHRWCITGTPIQRKLDDLYGLLRFLKSS 377 (1045)
Q Consensus 321 ~w~rVIlDEAH~iKn~~S~~~~---al~~L~--a~~Rw~LTGTPiqN~l~DL~~LL~FL~p~ 377 (1045)
..++||+|++.+.....-...+ .+.... ...-++|++|==++.+.+.+.-+..+++.
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~ 315 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYK 315 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCC
Confidence 4688999999987543322222 333332 24568899998888888777766655543
No 210
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=24.19 E-value=26 Score=41.63 Aligned_cols=54 Identities=24% Similarity=0.474 Sum_probs=35.5
Q ss_pred hhhhhcccccccccccccccccccccccccccccccCCCCCCccchhhhhhhccccccccccccCCcccccchhhh
Q 001607 136 RVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDEL 211 (1045)
Q Consensus 136 ~~~c~c~~~~~~~~~~~~~v~c~~c~~w~h~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~ 211 (1045)
...|.||....+. -.|||+.|..|.|..|..---+.. ....+...|.|..|..-
T Consensus 171 c~vC~~g~~~~~N----rmlqC~~C~~~fHq~Chqp~i~~~------------------l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 171 CSVCYCGGPGAGN----RMLQCDKCRQWYHQACHQPLIKDE------------------LAGDPFYEWFCDVCNRG 224 (464)
T ss_pred eeeeecCCcCccc----eeeeecccccHHHHHhccCCCCHh------------------hccCccceEeehhhccc
Confidence 3455566554432 579999999999999975332221 12235678889999753
No 211
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=23.88 E-value=36 Score=40.08 Aligned_cols=32 Identities=22% Similarity=0.486 Sum_probs=28.1
Q ss_pred ccCcEEEEeccCCCCChhhhhhcccccCCCCC
Q 001607 348 YAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379 (1045)
Q Consensus 348 ~a~~Rw~LTGTPiqN~l~DL~~LL~FL~p~~~ 379 (1045)
+.++-.+.||||+.|.+.++|++-++|.++.+
T Consensus 472 ~G~~L~l~sgTpi~ntlgem~~vqRyl~~~al 503 (637)
T COG4646 472 PGRALVLASGTPITNTLGEMFSVQRYLGAGAL 503 (637)
T ss_pred CCCeEEecCCCchhhhHHhhhhhhhhcCccHH
Confidence 34667889999999999999999999999853
No 212
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=23.79 E-value=87 Score=37.03 Aligned_cols=110 Identities=17% Similarity=0.151 Sum_probs=61.8
Q ss_pred cEEEEeCch-hHHHHHHHHHHhcC--CCCCeEEEEeCCCCCccccccccchhhhcCccEEEEehHHHHhhcccCCCCCcc
Q 001607 223 ATLIVCPAP-ILAQWDAEITRHTR--PGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 299 (1045)
Q Consensus 223 ~tLIV~P~S-Ll~qW~~Ei~k~~~--~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dVVItTY~~l~~d~~~~~~~~~~ 299 (1045)
..+|+||.- |..|-...|.+... +-.++++-...+.... .....-....|||++|-..+-..+....
T Consensus 95 sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sds-----v~~~~L~d~pdIvV~TP~~ll~~~~~~~----- 164 (569)
T KOG0346|consen 95 SAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDS-----VNSVALMDLPDIVVATPAKLLRHLAAGV----- 164 (569)
T ss_pred eeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchH-----HHHHHHccCCCeEEeChHHHHHHHhhcc-----
Confidence 367888874 67788888877542 1134444333222111 1233334568999999999887664311
Q ss_pred chhhhhhcccCCCccccccccccceEEeccccccCChH--HHHHHHHHHhcc-CcEEEEecc
Q 001607 300 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGT 358 (1045)
Q Consensus 300 ~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~--S~~~~al~~L~a-~~Rw~LTGT 358 (1045)
....-.-..+|+|||.-+-+.. -..-+....|+. -..+++|+|
T Consensus 165 ----------------~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSAT 210 (569)
T KOG0346|consen 165 ----------------LEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSAT 210 (569)
T ss_pred ----------------chhhhheeeEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhh
Confidence 0122235679999999875433 122222333432 235677777
No 213
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=23.55 E-value=3.8e+02 Score=30.84 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=17.1
Q ss_pred eeecCCCCcHHHHHHHHHHhc
Q 001607 84 ILADEMGLGKTVELLACIFAH 104 (1045)
Q Consensus 84 ILADEMGLGKTvq~LalI~~~ 104 (1045)
++.-..|.|||..+.++....
T Consensus 26 Lf~G~~G~GK~~~A~~~A~~l 46 (328)
T PRK05707 26 LLHGPAGIGKRALAERLAAAL 46 (328)
T ss_pred eeECCCCCCHHHHHHHHHHHH
Confidence 566689999999999887653
No 214
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=23.55 E-value=59 Score=41.02 Aligned_cols=44 Identities=27% Similarity=0.268 Sum_probs=29.7
Q ss_pred cCccEEEEehHHHHhhcccCCCCCccchhhhhhcccCCCccccccccccceEEeccccccCChH
Q 001607 274 VGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 337 (1045)
Q Consensus 274 ~~~dVVItTY~~l~~d~~~~~~~~~~~~~~~r~~k~~~~~~s~L~~i~w~rVIlDEAH~iKn~~ 337 (1045)
..+|+||++|..+..+....... .+ -..-..+|+||||++-...
T Consensus 193 ~~ad~vv~nh~~~~~~~~~~~~~-------------------~~-~p~~~v~v~DEAH~l~d~a 236 (654)
T COG1199 193 ENADLVVTNHALLLADVALEESR-------------------IL-LPENDVVVFDEAHNLPDIA 236 (654)
T ss_pred hhCCEEEEccHHHHhHHHhhhhh-------------------cc-CCcccEEEEeccccchHHH
Confidence 57899999999998865321100 00 1234689999999997644
No 215
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=21.87 E-value=82 Score=39.26 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=32.0
Q ss_pred cccceEEeccccccCChHHHHHHHHHHhccCcEEEEeccCCC
Q 001607 320 IFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 361 (1045)
Q Consensus 320 i~w~rVIlDEAH~iKn~~S~~~~al~~L~a~~Rw~LTGTPiq 361 (1045)
.++++||||||-|+-.. ...+.+..++...|++|.|=|-|
T Consensus 258 l~~dvlIiDEaSMvd~~--l~~~ll~al~~~~rlIlvGD~~Q 297 (586)
T TIGR01447 258 LPLDVLVVDEASMVDLP--LMAKLLKALPPNTKLILLGDKNQ 297 (586)
T ss_pred CcccEEEEcccccCCHH--HHHHHHHhcCCCCEEEEECChhh
Confidence 36899999999999643 45566677888899999998766
No 216
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=21.17 E-value=82 Score=32.30 Aligned_cols=64 Identities=20% Similarity=0.428 Sum_probs=33.3
Q ss_pred CcchhH--HHHHhHHHHHH---HHHHHHHHHHHHHHhhhcCCChHhhhh------ccccccc---cCC-CCCCcccccc
Q 001607 784 SISGLT--YHIQSSLDQLE---ASRKTLLDRLLEIDQTMEKPKEEDMDR------MRHCRIC---YGV-GDGPICVHCE 847 (1045)
Q Consensus 784 ~~~gL~--~~l~~~l~~L~---~~R~~~~~~l~~l~~~~~~p~~~~ve~------~~~C~~c---~~~-~~~~~C~~C~ 847 (1045)
...||+ |+|+..+.+|- +-|.+++.+--+=.....-|+---|-+ ..+|-+| -.+ -+|..|+-|-
T Consensus 104 E~kGlKKFflLS~R~r~LiiKHKVrNe~v~~Wf~EeEvyGmpKi~~iika~tLsk~~hcilCtvCe~r~w~g~~CPKCG 182 (200)
T PF12387_consen 104 ESKGLKKFFLLSGRVRNLIIKHKVRNETVASWFGEEEVYGMPKIITIIKAATLSKSKHCILCTVCEGREWKGGNCPKCG 182 (200)
T ss_pred hhcCcceeeeehhHHHHHHHHhHhhhHHHHHHcccccccCcchhhhhhhHHhccCCCceEEEeeeecCccCCCCCCccc
Confidence 445555 88888888884 566666665522222222233322221 3445444 322 2567788883
No 217
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=20.72 E-value=4.3e+02 Score=33.52 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=24.8
Q ss_pred CcEEEEeCch-hHHHHHHHHHHhcCCCCCeEEEE
Q 001607 222 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIY 254 (1045)
Q Consensus 222 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~~~l~v~vy 254 (1045)
+|+|||+|.. ...+|.+++..|+ |.-.|..|
T Consensus 58 r~vLIVt~~~~~A~~l~~dL~~~~--~~~~v~~f 89 (652)
T PRK05298 58 RPTLVLAHNKTLAAQLYSEFKEFF--PENAVEYF 89 (652)
T ss_pred CCEEEEECCHHHHHHHHHHHHHhc--CCCeEEEe
Confidence 5899999985 5679999999998 45556655
No 218
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=20.19 E-value=83 Score=31.55 Aligned_cols=59 Identities=14% Similarity=0.037 Sum_probs=34.9
Q ss_pred CCCcccccccCCCcceeeeccCCcccCCCCCCCCCccCceeecCCCCcHHHHHHHHHHhccC
Q 001607 45 SPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRK 106 (1045)
Q Consensus 45 ~plw~~~~~~d~~~~~y~n~~tG~~~~~~~~~~~~~rGGILADEMGLGKTvq~LalI~~~~~ 106 (1045)
.|.|.-......+..+|||++|+.-.-+++.......|++ .||-=.-|.++-++..|..
T Consensus 8 P~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t~~~~~~~---~~~~p~~Vr~sHlLVKH~~ 66 (163)
T KOG3259|consen 8 PPGWEKRMSRSSGRPYYFNTETNESQWERPSGTSKSGGKI---GQGEPARVRCSHLLVKHKG 66 (163)
T ss_pred CchhheeccccCCCcceeccccchhhccCCCccccccccc---cCCCccceeEEEEEEcccc
Confidence 4567654455567889999999987655555443333333 3333445556656655543
No 219
>COG4224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.05 E-value=67 Score=28.39 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhhhhhhhHHH
Q 001607 695 TVCENLKQKYLSGFSVKLSV 714 (1045)
Q Consensus 695 ~~~~~~~~~y~~~~~~~~~~ 714 (1045)
++-+.||+.||+.|-..+..
T Consensus 27 ~eQ~~LR~eYl~~fr~~vk~ 46 (77)
T COG4224 27 KEQAKLRREYLESFRGQVKN 46 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66788999999998877655
No 220
>PF08807 DUF1798: Bacterial domain of unknown function (DUF1798); InterPro: IPR014913 This family contains many hypothetical proteins. The structure of one of them has been solved and it adopts an all alpha helical fold. ; PDB: 2HUJ_A 2ETS_A 2HFI_A 2IM8_B.
Probab=20.03 E-value=4e+02 Score=25.67 Aligned_cols=100 Identities=23% Similarity=0.261 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHhhhhhhhhHH-HHHHHHHHHHHHHHHHhhhhcccCChhHHHHHHHhhcC--CCc-hHH---HHHHHH
Q 001607 691 ASLITVCENLKQKYLSGFSVKLS-VAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGN--KDF-SAE---LIRKIE 763 (1045)
Q Consensus 691 ~~l~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~ww~~~l~~~~~~--~~~-~~~---l~~~i~ 763 (1045)
..|.+.++++...|.....++.. .--++.+|..++|..+++. |=..|+.||... +-. ..+ ++..|+
T Consensus 3 ~qL~~~~~~~~~~y~~~k~~~~e~DF~~~VKPf~d~vd~~l~~-------w~~~a~~~i~~~rP~Y~~~~Qi~~~~eni~ 75 (111)
T PF08807_consen 3 EQLIEENEEAEQRYQEVKEEGKEYDFYEEVKPFADEVDQLLEE-------WKEYALEWIKEERPKYMHEQQIESTIENIE 75 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHST----TTTTHHHHHHHHHHHHHH-------HHHHHHHHHHHC--TTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChhhhccchhHHHHHHHHH-------HHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 35889999999999987543333 3456678888888888765 888899999773 222 223 334444
Q ss_pred HH-hhccccccccccccccccCcchhHHHHHhHHHHHH
Q 001607 764 EA-ISGSLNKSRALRTASRYRSISGLTYHIQSSLDQLE 800 (1045)
Q Consensus 764 ~~-~~~~~~~~~~~~~~~~~~~~~gL~~~l~~~l~~L~ 800 (1045)
.. +.+........+. ...+.+..|+|..-+++|+
T Consensus 76 ~lsVq~f~~~ts~KrF---~e~~kSV~Y~L~~i~~~ie 110 (111)
T PF08807_consen 76 ELSVQCFFPKTSKKRF---KEKIKSVQYTLQNILEEIE 110 (111)
T ss_dssp HHHHHTTHTTS-HHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcchhHH---HHHHHHHHHHHHHHHHHhc
Confidence 33 4444443222221 2234566788888777765
Done!