Query 001607
Match_columns 1045
No_of_seqs 361 out of 3013
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 16:07:57 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001607.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_905-909//hhsearch_pdb/001607hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 1.0 1 1 546.1 19.6 425 5-651 228-703 (800)
2 1z3i_X Similar to RAD54-like; 1.0 1 1 532.4 15.8 436 7-650 50-546 (644)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 489.4 23.7 416 5-650 30-471 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 341.6 14.5 348 222-647 201-630 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 247.3 18.6 368 222-646 53-489 (494)
6 2fwr_A DNA repair protein RAD2 1.0 1 1 231.5 14.3 309 222-644 134-466 (472)
7 1z5z_A Helicase of the SNF2/RA 1.0 1 1 204.4 8.5 206 410-650 11-242 (271)
8 4a2w_A RIG-I, retinoic acid in 1.0 1 1 200.4 23.7 350 221-638 296-755 (936)
9 4a2q_A RIG-I, retinoic acid in 1.0 1 1 191.2 23.3 355 221-638 296-755 (797)
10 3hgt_A HDA1 complex subunit 3; 1.0 1 1 182.0 2.7 196 424-644 18-249 (328)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=546.14 Aligned_cols=425 Identities=19% Similarity=0.214 Sum_probs=322.2
Q ss_pred CCCCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 87886-68882999999999988010999998122101246788666543477762053046896457888888885583
Q 001607 5 DLPDL-LPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGG 83 (1045)
Q Consensus 5 ~~p~L-~~~LrpyQ~~aV~WMl~rE~~~~~~~~~~~~~~~~~p~w~~~~~~d~~~~~y~n~~tG~~~~~~~~~~~~~rGG 83 (1045)
.||.+ ..+|||||+.||.||+.....+ +||
T Consensus 228 ~p~~~~~~~Lr~yQ~egv~~l~~~~~~~-------------------------------------------------~~~ 258 (800)
T 3mwy_W 228 QPPFIKGGELRDFQLTGINWMAFLWSKG-------------------------------------------------DNG 258 (800)
T ss_dssp CCTTCCSSCCCTHHHHHHHHHHHHHTTT-------------------------------------------------CCE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCC-------------------------------------------------CCE
T ss_conf 9986579975899999999999985138-------------------------------------------------998
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00259887278999999996149999972000111123213466787732222453203555321224652102333534
Q 001607 84 ILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAW 163 (1045)
Q Consensus 84 ILADEMGLGKTve~LalIl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~~~v~c~~c~~w 163 (1045)
||||+||||||+++|+++.......
T Consensus 259 ILademGlGKT~~ai~~i~~l~~~~------------------------------------------------------- 283 (800)
T 3mwy_W 259 ILADEMGLGKTVQTVAFISWLIFAR------------------------------------------------------- 283 (800)
T ss_dssp EECCCTTSSTTHHHHHHHHHHHHHH-------------------------------------------------------
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHC-------------------------------------------------------
T ss_conf 9982787532999999999999860-------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 45654566789877640366632013565442202578544310012320168989999689993811199999999995
Q 001607 164 QHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRH 243 (1045)
Q Consensus 164 ~h~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~tLIV~P~SLl~QW~~Ei~k~ 243 (1045)
...+|+|||||.+++.||.+||.+|
T Consensus 284 -------------------------------------------------------~~~~~~LIV~P~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 284 -------------------------------------------------------RQNGPHIIVVPLSTMPAWLDTFEKW 308 (800)
T ss_dssp -------------------------------------------------------SCCSCEEEECCTTTHHHHHHHHHHH
T ss_pred -------------------------------------------------------CCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf -------------------------------------------------------7799889998803899999999997
Q ss_pred CCCCCCEEEEEECCCCCCCCCCC-------CCCHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCC
Q ss_conf 29999709998087777654421-------01021102766999806889740046777776502343210247875210
Q 001607 244 TRPGSLKTCIYEGARNSSLSDTS-------IMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTL 316 (1045)
Q Consensus 244 ~~~~~l~v~vy~G~~~~~~~~~~-------~~~~~~l~~~dIVITTY~~L~~d~~~~~~~~~~~~~~~r~~k~y~~~~s~ 316 (1045)
+ |.+++.+|+|....+..... .........++|+||||+++..+.. .
T Consensus 309 ~--p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~------------------------~ 362 (800)
T 3mwy_W 309 A--PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA------------------------E 362 (800)
T ss_dssp S--TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH------------------------H
T ss_pred C--CCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHH------------------------H
T ss_conf 7--9964999827777788988877622630013445667889906999986499------------------------9
Q ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 11223220771420013796889999999723482899826688899135410123468889998378999971987688
Q 001607 317 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENG 396 (1045)
Q Consensus 317 L~~i~w~rVIlDEAH~iKN~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~Ll~fL~p~~~~~~~~f~~~~~~p~~~~ 396 (1045)
|..+.|++||+||||++||+.++.++++..+++.+||+|||||++|++.|||++++||.|+.|+....|.-... ...
T Consensus 363 l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~---~~~ 439 (800)
T 3mwy_W 363 LGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQ---DEE 439 (800)
T ss_dssp HHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CC---TTH
T ss_pred HHCCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCC---CHH
T ss_conf 83377325641344441471019999999752243897227857799999999999858663674344232223---146
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 43269999999877653202333335579999618999951999999999999999887999999999998864048999
Q 001607 397 DVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGH 476 (1045)
Q Consensus 397 ~~~~~~~L~~~L~~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Er~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 476 (1045)
....+..|+.+++|+|+||+|.+|... |||+.+.+++|+||+.|+.+|+.+...........
T Consensus 440 ~~~~~~~L~~~l~p~~lRR~k~dv~~~--LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~---------------- 501 (800)
T 3mwy_W 440 QEEYIHDLHRRIQPFILRRLKKDVEKS--LPSKTERILRVELSDVQTEYYKNILTKNYSALTAG---------------- 501 (800)
T ss_dssp HHHHHHHHHHTTGGGEEECCGGGGTTT--SCCEEEEEEEECCCHHHHHHHHHHHHHCCC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC----------------
T ss_conf 899999999997577753208766431--68827999970799999999999999999998610----------------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC----CCCCC-------------HHHHHHHHHHHHHH
Q ss_conf 88887757100236599999999999998069878888854456----89999-------------99999999999898
Q 001607 477 ASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQ----QSPLS-------------MDEILMVLIGKTKI 539 (1045)
Q Consensus 477 ~~~~~~~~~~l~~~~~~~il~~L~rLRQiC~HP~L~~~~~~~~~----~~~~t-------------~~eiL~~Ll~~~~~ 539 (1045)
.......+++.+++||++|+||.+......... ....+ .-.++..++.++.
T Consensus 502 -----------~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~- 569 (800)
T 3mwy_W 502 -----------AKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLK- 569 (800)
T ss_dssp ----------------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHT-
T ss_pred -----------CCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH-
T ss_conf -----------35454469999999998735865423557899886156655577888876642769999999999975-
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHCCCCCCCC---CC-----------------
Q ss_conf 524510127776646877999998687989899---99--999999984101789776---71-----------------
Q 001607 540 EGEEALRKLVMALNGLAGIALIEKNLSQAVSLY---KE--AMAVVEEHSEDFRLDPLL---NI----------------- 594 (1045)
Q Consensus 540 e~~~~~rkvl~~sq~~a~l~ii~~~~~~a~~~y---~~--~l~~~~~~~~~f~~d~~~---~l----------------- 594 (1045)
+.++++++|+|+..++++|+..+......| .+ ....+++.++.|+..... .+
T Consensus 570 ---~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~ 646 (800)
T 3mwy_W 570 ---KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADT 646 (800)
T ss_dssp ---TTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCE
T ss_pred ---HCCCEEEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCE
T ss_conf ---27981899963599999999999867997899969999999999999960899982599974544567877601636
Q ss_pred EEEEECCCCCCCHHHHHH-HHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 147607867820023454-532048987627875110587321304675421025456
Q 001607 595 HLHHNLTEILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREE 651 (1045)
Q Consensus 595 h~~~nl~~wnp~~~~QA~-R~hRiGQ~~~V~vyrl~t~~tiEE~~~~~~k~~~~~~~~ 651 (1045)
+++++. +|||+.+.||+ |+|||||+++|.||||++++|+||.+...+++|......
T Consensus 647 VI~~D~-~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~ 703 (800)
T 3mwy_W 647 VVIFDS-DWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYA 703 (800)
T ss_dssp EEESSC-CSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC-
T ss_pred EEEECC-CCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 899468-788116899999988558986379999861998999999999998889999
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=532.42 Aligned_cols=436 Identities=18% Similarity=0.256 Sum_probs=320.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 88668882999999999988010999998122101246788666543477762053046896457888888885583002
Q 001607 7 PDLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILA 86 (1045)
Q Consensus 7 p~L~~~LrpyQ~~aV~WMl~rE~~~~~~~~~~~~~~~~~p~w~~~~~~d~~~~~y~n~~tG~~~~~~~~~~~~~rGGILA 86 (1045)
|.+..+|||||++||.||.....+... ...+|||||
T Consensus 50 p~l~~~LrpyQ~~gv~~l~~~~~~~~~--------------------------------------------~~~~g~ILa 85 (644)
T 1z3i_X 50 PVLSKVLRPHQREGVKFLWDCVTGRRI--------------------------------------------ENSYGCIMA 85 (644)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTSSS--------------------------------------------TTCCEEEEC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHCCCC--------------------------------------------CCCCCEEEE
T ss_conf 564003519999999999984233544--------------------------------------------588875961
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 59887278999999996149999972000111123213466787732222453203555321224652102333534456
Q 001607 87 DEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAWQHA 166 (1045)
Q Consensus 87 DEMGLGKTve~LalIl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~~~v~c~~c~~w~h~ 166 (1045)
||||||||+++|+++.......+.
T Consensus 86 d~mGlGKT~~~i~~i~~l~~~~~~-------------------------------------------------------- 109 (644)
T 1z3i_X 86 DEMGLGKTLQCITLIWTLLKQSPD-------------------------------------------------------- 109 (644)
T ss_dssp CCTTSCHHHHHHHHHHHHHHCCTT--------------------------------------------------------
T ss_pred ECCCCHHHHHHHHHHHHHHHHCCC--------------------------------------------------------
T ss_conf 078742999999999999974866--------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCC
Q ss_conf 54566789877640366632013565442202578544310012320168989999689993811199999999995299
Q 001607 167 DCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRP 246 (1045)
Q Consensus 167 ~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~tLIV~P~SLl~QW~~Ei~k~~~~ 246 (1045)
.....+++|||||.+++.||.+||.+|++.
T Consensus 110 --------------------------------------------------~~p~~~~~LiV~P~sll~qW~~E~~~~~~~ 139 (644)
T 1z3i_X 110 --------------------------------------------------CKPEIDKVIVVSPSSLVRNWYNEVGKWLGG 139 (644)
T ss_dssp --------------------------------------------------SSCSCSCEEEEECHHHHHHHHHHHHHHHGG
T ss_pred --------------------------------------------------CCCCCCCEEEEECHHHHHHHHHHHHHHCCC
T ss_conf --------------------------------------------------567778579996589988799999997588
Q ss_pred CCCEEEEEECCCCCCCCCC--CCC-CHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 9970999808777765442--101-0211027669998068897400467777765023432102478752101122322
Q 001607 247 GSLKTCIYEGARNSSLSDT--SIM-DISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWW 323 (1045)
Q Consensus 247 ~~l~v~vy~G~~~~~~~~~--~~~-~~~~l~~~dIVITTY~~L~~d~~~~~~~~~~~~~~~r~~k~y~~~~s~L~~i~w~ 323 (1045)
.+.++.++|......... ... .......++|+||||++++.+.. .+....|+
T Consensus 140 -~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~------------------------~l~~~~~~ 194 (644)
T 1z3i_X 140 -RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE------------------------VLHKGKVG 194 (644)
T ss_dssp -GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT------------------------TTTTSCCC
T ss_pred -CEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHH------------------------HHHCCCCC
T ss_conf -72599980898899999999998733777787579963899876578------------------------75048865
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCC------
Q ss_conf 07714200137968899999997234828998266888991354101234688899983789999719876884------
Q 001607 324 RICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGD------ 397 (1045)
Q Consensus 324 rVIlDEAH~iKN~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~Ll~fL~p~~~~~~~~f~~~~~~p~~~~~------ 397 (1045)
+||+||||++||+.++.++++..+++.+||+|||||++|++.|||++++||.|++|++...|.+.|..|+..+.
T Consensus 195 ~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~ 274 (644)
T 1z3i_X 195 LVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASD 274 (644)
T ss_dssp EEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCS
T ss_pred EEEEECCEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHCCCCCCCH
T ss_conf 79987862247804599999985556737998467345889999999986188768999999986326154167767788
Q ss_pred ------HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf ------32699999998776532023333355799996189999519999999999999998879999999999988640
Q 001607 398 ------VGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKR 471 (1045)
Q Consensus 398 ------~~~~~~L~~~L~~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Er~~Y~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1045)
...+..|+.+++|+|+||+|.++... ||++.+.+++|+||+.|+.+|+.+.+..... .
T Consensus 275 ~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~--LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~--------------~ 338 (644)
T 1z3i_X 275 KDRAAGEQKLQELISIVNRCLIRRTSDILSKY--LPVKIEQVVCCNLTPLQKELYKLFLKQAKPV--------------E 338 (644)
T ss_dssp HHHHHHHHHHHHHHHHHHHHEECCCGGGGGGT--SCCEEEEEEEECCCHHHHHHHHHHHHHHCGG--------------G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHH--------------H
T ss_conf 89999999999999998899987108767642--7983699998379989999999999989999--------------9
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-------CCC----CCC---------CCCCHHHHHH
Q ss_conf 48999888877571002365999999999999980698788888-------544----568---------9999999999
Q 001607 472 NVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSG-------LRS----LQQ---------SPLSMDEILM 531 (1045)
Q Consensus 472 ~~~g~~~~~~~~~~~l~~~~~~~il~~L~rLRQiC~HP~L~~~~-------~~~----~~~---------~~~t~~eiL~ 531 (1045)
.. ..+ .....++..+++|||+||||.++... ... ... .......++.
T Consensus 339 ~~-----~~g--------~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~ 405 (644)
T 1z3i_X 339 SL-----QTG--------KISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLD 405 (644)
T ss_dssp SS-----CTT--------CCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHH
T ss_pred HH-----HCC--------CCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 87-----627--------62145999999999995799988888741540035577645421110005701174899999
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--HHHHHHHHHCCCCCCCC---CC---------
Q ss_conf 99999898524510127776646877999998687989899---999--99999984101789776---71---------
Q 001607 532 VLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLY---KEA--MAVVEEHSEDFRLDPLL---NI--------- 594 (1045)
Q Consensus 532 ~Ll~~~~~e~~~~~rkvl~~sq~~a~l~ii~~~~~~a~~~y---~~~--l~~~~~~~~~f~~d~~~---~l--------- 594 (1045)
.++...... ..+++++|+|+..++++|+..+......| .+. ...+++.++.|+.+... .+
T Consensus 406 ~ll~~~~~~---~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~G 482 (644)
T 1z3i_X 406 YILAMTRTT---TSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCG 482 (644)
T ss_dssp HHHHHHHHH---CCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTT
T ss_pred HHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
T ss_conf 999998646---99879999805999999999999779978998399999999999999639999967999844556678
Q ss_pred --------EEEEECCCCCCCHHHHHH-HHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf --------147607867820023454-53204898762787511058732130467542102545
Q 001607 595 --------HLHHNLTEILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSRE 650 (1045)
Q Consensus 595 --------h~~~nl~~wnp~~~~QA~-R~hRiGQ~~~V~vyrl~t~~tiEE~~~~~~k~~~~~~~ 650 (1045)
.+++++ +|||+.+.||+ |+|||||+++|.||++++.+||||.+...+.+|+-...
T Consensus 483 lnl~~a~~Vi~~d~-~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~ 546 (644)
T 1z3i_X 483 LNLIGANRLVMFDP-DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSS 546 (644)
T ss_dssp CCCTTEEEEEECSC-CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSC
T ss_pred CCCCCCCEEEEECC-CCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 46523898999799-99813799998840322898726999988798899999999999999999
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=489.45 Aligned_cols=416 Identities=24% Similarity=0.333 Sum_probs=324.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCE
Q ss_conf 87886688829999999999880109999981221012467886665434777620530468964578888888855830
Q 001607 5 DLPDLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGI 84 (1045)
Q Consensus 5 ~~p~L~~~LrpyQ~~aV~WMl~rE~~~~~~~~~~~~~~~~~p~w~~~~~~d~~~~~y~n~~tG~~~~~~~~~~~~~rGGI 84 (1045)
+|+++..+|+|||++|+.||..++..+ +|||
T Consensus 30 ~p~~~~~~L~~~Q~~~v~~l~~~~~~~-------------------------------------------------~~~i 60 (500)
T 1z63_A 30 EPYNIKANLRPYQIKGFSWMRFMNKLG-------------------------------------------------FGIC 60 (500)
T ss_dssp CCCSCSSCCCHHHHHHHHHHHHHHHTT-------------------------------------------------CCEE
T ss_pred CCHHHHCCCHHHHHHHHHHHHHHHHCC-------------------------------------------------CCEE
T ss_conf 983320033699999999999974179-------------------------------------------------9889
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 02598872789999999961499999720001111232134667877322224532035553212246521023335344
Q 001607 85 LADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAWQ 164 (1045)
Q Consensus 85 LADEMGLGKTve~LalIl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~~~v~c~~c~~w~ 164 (1045)
|||+||+|||+++++++......
T Consensus 61 lad~~GlGKT~~ai~~i~~~~~~--------------------------------------------------------- 83 (500)
T 1z63_A 61 LADDMGLGKTLQTIAVFSDAKKE--------------------------------------------------------- 83 (500)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHHT---------------------------------------------------------
T ss_pred EEECCCCCHHHHHHHHHHHHHHC---------------------------------------------------------
T ss_conf 98089973899999999988755---------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHC
Q ss_conf 56545667898776403666320135654422025785443100123201689899996899938111999999999952
Q 001607 165 HADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHT 244 (1045)
Q Consensus 165 h~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~tLIV~P~SLl~QW~~Ei~k~~ 244 (1045)
...+++|||||.+++.||.+|+.+|+
T Consensus 84 ------------------------------------------------------~~~~~~LIv~P~~l~~qw~~e~~~~~ 109 (500)
T 1z63_A 84 ------------------------------------------------------NELTPSLVICPLSVLKNWEEELSKFA 109 (500)
T ss_dssp ------------------------------------------------------TCCSSEEEEECSTTHHHHHHHHHHHC
T ss_pred ------------------------------------------------------CCCCCEEEECCHHHHHHHHHHHHHHC
T ss_conf ------------------------------------------------------89997899903899999999999977
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCE
Q ss_conf 99997099980877776544210102110276699980688974004677777650234321024787521011223220
Q 001607 245 RPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWR 324 (1045)
Q Consensus 245 ~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dIVITTY~~L~~d~~~~~~~~~~~~~~~r~~k~y~~~~s~L~~i~w~r 324 (1045)
+.+++.+++|.... .....++|+|+||+++..+. .+....|++
T Consensus 110 --~~~~v~~~~g~~~~----------~~~~~~~ivi~t~~~l~~~~-------------------------~l~~~~~~~ 152 (500)
T 1z63_A 110 --PHLRFAVFHEDRSK----------IKLEDYDIILTTYAVLLRDT-------------------------RLKEVEWKY 152 (500)
T ss_dssp --TTSCEEECSSSTTS----------CCGGGSSEEEEEHHHHTTCH-------------------------HHHTCCEEE
T ss_pred --CCCEEEEEECCCHH----------CCCCCCCEEEEEHHHHHCCC-------------------------HHCCCCCCE
T ss_conf --99559997267021----------00357768996379972630-------------------------211787287
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 77142001379688999999972348289982668889913541012346888999837899997198768843269999
Q 001607 325 ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFT 404 (1045)
Q Consensus 325 VIlDEAH~iKN~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~Ll~fL~p~~~~~~~~f~~~~~~p~~~~~~~~~~~L 404 (1045)
||+||||+++|+.++.++++..+.+.++|+|||||++|++.|||+++.||.|++|++...|.+.|..|+..++....+.|
T Consensus 153 vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l 232 (500)
T 1z63_A 153 IVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEEL 232 (500)
T ss_dssp EEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 99808410178768999999960047189974677779999999999985877579989999985251114668899999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99987765320233333557999961899995199999999999999988799999999999886404899988887757
Q 001607 405 HKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYN 484 (1045)
Q Consensus 405 ~~~L~~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Er~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 484 (1045)
+.+++++++||+|.+......||++.+.+++++|++.|+.+|+.+.+...... . ..
T Consensus 233 ~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~-----------~--------~~----- 288 (500)
T 1z63_A 233 KAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI-----------D--------SV----- 288 (500)
T ss_dssp HHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTT-----------T--------TC-----
T ss_pred HHHHHHHEEEECCCCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH-----------H--------HH-----
T ss_conf 99976674550255424112299975899981899999999999999999999-----------8--------64-----
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 10023659999999999999806987888885445689999999999999998985245101277766468779999986
Q 001607 485 PIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKN 564 (1045)
Q Consensus 485 ~~l~~~~~~~il~~L~rLRQiC~HP~L~~~~~~~~~~~~~t~~eiL~~Ll~~~~~e~~~~~rkvl~~sq~~a~l~ii~~~ 564 (1045)
........++..+++|||+|+||.+...+.... .....-+.+..++.+...+ .+++++|+++..+++.+...
T Consensus 289 --~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~--~~s~K~~~l~~~l~~~~~~----~~k~lvF~~~~~~~~~l~~~ 360 (500)
T 1z63_A 289 --TGIKRKGMILSTLLKLKQIVDHPALLKGGEQSV--RRSGKMIRTMEIIEEALDE----GDKIAIFTQFVDMGKIIRNI 360 (500)
T ss_dssp --CTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCS--TTCHHHHHHHHHHHHHHTT----TCCEEEECSCHHHHHHHHHH
T ss_pred --HCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCHH--HCCHHHHHHHHHHHHHHCC----CCCEEEEEEHHHHHHHHHHH
T ss_conf --232106799999999998817998843852011--1155299999999998726----88689997218899999999
Q ss_pred HHHHH-H---HHHHH--HHHHHHHHHCCCCCCCCC--C-----------------EEEEECCCCCCCHHHHHH-HHHHCC
Q ss_conf 87989-8---99999--999999841017897767--1-----------------147607867820023454-532048
Q 001607 565 LSQAV-S---LYKEA--MAVVEEHSEDFRLDPLLN--I-----------------HLHHNLTEILPMVANCAT-ELSQNE 618 (1045)
Q Consensus 565 ~~~a~-~---~y~~~--l~~~~~~~~~f~~d~~~~--l-----------------h~~~nl~~wnp~~~~QA~-R~hRiG 618 (1045)
+.... . .+.+. ...+++..+.|+.++-.. + .+.+++ +|||+...||. |+||+|
T Consensus 361 l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~-~~~~~~~~Q~~gR~~R~G 439 (500)
T 1z63_A 361 IEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDR-WWNPAVEDQATDRVYRIG 439 (500)
T ss_dssp HHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSC-CSCC---CHHHHTTTTTT
T ss_pred HHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECC-CCCCCHHHHHHHHHHHCC
T ss_conf 9885388769997999999999999996089998779995333557774455888999589-989545899999888738
Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 98762787511058732130467542102545
Q 001607 619 QHFPGCSEKAFKIHSIETCDENARKCQRVSRE 650 (1045)
Q Consensus 619 Q~~~V~vyrl~t~~tiEE~~~~~~k~~~~~~~ 650 (1045)
|+++|.||++++.+|+||.+...+.+|.-.-.
T Consensus 440 q~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~ 471 (500)
T 1z63_A 440 QTRNVIVHKLISVGTLEEKIDQLLAFKRSLFK 471 (500)
T ss_dssp TTSCEEEEEEEETTSHHHHTHHHHTTCSSSSS
T ss_pred CCCEEEEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 98706999977489899999999999999999
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=341.58 Aligned_cols=348 Identities=14% Similarity=0.130 Sum_probs=231.7
Q ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCCH
Q ss_conf 96899938111999999999952999970999808777765442101021102766999806889740046777776502
Q 001607 222 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 301 (1045)
Q Consensus 222 ~~tLIV~P~SLl~QW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dIVITTY~~L~~d~~~~~~~~~~~~ 301 (1045)
+++|||||.+++.||..|+.+++ .+++.+|+|...... .......+..++|+|+||+++.++...
T Consensus 201 ~rvLIVvP~sLl~Qw~~E~~~~f---~l~v~v~~~~~~~~~---~~~~~~~~~~~dIvI~T~~~L~~~~~~--------- 265 (968)
T 3dmq_A 201 ERVLIIVPETLQHQWLVEMLRRF---NLRFALFDDERYAEA---QHDAYNPFDTEQLVICSLDFARRSKQR--------- 265 (968)
T ss_dssp CCEEEECCTTTHHHHHHHHHHHS---CCCCEECCHHHHHHH---HHTTCSSSTTCSEEEECHHHHHTSTTT---------
T ss_pred CEEEEEECHHHHHHHHHHHHHHH---CCCEEEECCCHHHHH---HHHCCCCCCCCCEEEECHHHHHHCHHH---------
T ss_conf 82999957888999999999986---998799806205554---320036445689899768998648788---------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHH---HHHHHHHH--CCCCEEEEECCCCCCCHHHHHHCCCCCCC
Q ss_conf 34321024787521011223220771420013796889---99999972--34828998266888991354101234688
Q 001607 302 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA---ATEMALRL--YAKHRWCITGTPIQRKLDDLYGLLRFLKS 376 (1045)
Q Consensus 302 ~~~r~~k~y~~~~s~L~~i~w~rVIlDEAH~iKN~~S~---~~~al~~L--~a~~Rw~LTGTPiqN~l~DL~~Ll~fL~p 376 (1045)
...+....|++||+||||+++|..+. .++++..+ ++.++|+|||||++|++.|+|+++.|+.|
T Consensus 266 ------------~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p 333 (968)
T 3dmq_A 266 ------------LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDP 333 (968)
T ss_dssp ------------THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCT
T ss_pred ------------HHHHHHCCCCEEEEHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCC
T ss_conf ------------88764158778974446762588875429999999986257858999768766987999999982593
Q ss_pred CCCCCHHHHHHHHCCC---------CCCC----------------------------------CHHHHHHHHHHH-----
Q ss_conf 8999837899997198---------7688----------------------------------432699999998-----
Q 001607 377 SPFSISRWWIEVIRDP---------YENG----------------------------------DVGAMEFTHKFF----- 408 (1045)
Q Consensus 377 ~~~~~~~~f~~~~~~p---------~~~~----------------------------------~~~~~~~L~~~L----- 408 (1045)
+.|++...|...+... +..+ .......+..++
T Consensus 334 ~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~ 413 (968)
T 3dmq_A 334 NRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGT 413 (968)
T ss_dssp TTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 01189899999998578899999987426789988999999884203367887503622233379999999999986173
Q ss_pred HHHHHHCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 77653202333335579999618999951999999999999999887999999999998864048999888877571002
Q 001607 409 KEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIIT 488 (1045)
Q Consensus 409 ~~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Er~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~ 488 (1045)
..+++|+++..+. .+|++....+.+++++.++..|+..... .+ .....
T Consensus 414 ~~~l~r~~r~~i~---~~p~r~~~~~~l~~~~~~~~~~~~~~~~-----------------~~--------~~~~~---- 461 (968)
T 3dmq_A 414 SRVLFRNTRNGVK---GFPKRELHTIKLPLPTQYQTAIKVSGIM-----------------GA--------RKSAE---- 461 (968)
T ss_dssp TTTEECCCTTTCC---CCCCCCCCEEEECCCHHHHHHHHHHHHT-----------------TC--------CSSGG----
T ss_pred CHHHHHHHHHHHC---CCCHHHEEEEECCCCHHHHHHHHHHHHH-----------------HH--------HHHHH----
T ss_conf 3265632265545---5671115752368999999999987543-----------------02--------12667----
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 36599999999999998069878888854456899---999999999999989852451012777664687799999868
Q 001607 489 HAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSP---LSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNL 565 (1045)
Q Consensus 489 ~~~~~~il~~L~rLRQiC~HP~L~~~~~~~~~~~~---~t~~eiL~~Ll~~~~~e~~~~~rkvl~~sq~~a~l~ii~~~~ 565 (1045)
.....+.+|......+....... ....+.+..++.. ....++++|+++....+.+...+
T Consensus 462 ------------~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~------~~~~k~iVF~~~~~~~~~l~~~L 523 (968)
T 3dmq_A 462 ------------DRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS------HRSQKVLVICAKAATALQLEQVL 523 (968)
T ss_dssp ------------GGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH------TSSSCCCEECSSTHHHHHHHHHH
T ss_pred ------------HHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH------CCCCCEEEEECCHHHHHHHHHHH
T ss_conf ------------777641085989987643331356856799999999983------79997899969599999999999
Q ss_pred HHH----HHHHHHHH--HHHHHHHHCCCCCC--CC---------------CC--EEEEECCCCCCCHHHHHH-HHHHCCC
Q ss_conf 798----98999999--99999841017897--76---------------71--147607867820023454-5320489
Q 001607 566 SQA----VSLYKEAM--AVVEEHSEDFRLDP--LL---------------NI--HLHHNLTEILPMVANCAT-ELSQNEQ 619 (1045)
Q Consensus 566 ~~a----~~~y~~~l--~~~~~~~~~f~~d~--~~---------------~l--h~~~nl~~wnp~~~~QA~-R~hRiGQ 619 (1045)
... ...+.+.+ ..++...+.|+.+. .. .+ .+.+++ +|||....|+. |++|+||
T Consensus 524 ~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~-p~~~~~~~Q~~GR~~R~Gq 602 (968)
T 3dmq_A 524 REREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDL-PFNPDLLEQRIGRLDRIGQ 602 (968)
T ss_dssp HTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSC-CSSHHHHHHHHHTTSCSSS
T ss_pred HHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCEEEEECC-CCCHHHHHHHHHCCCCCCC
T ss_conf 987498389984999999999999997479976308985334316888556767999569-9987899987011430799
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHCC
Q ss_conf 8762787511058732130467542102
Q 001607 620 HFPGCSEKAFKIHSIETCDENARKCQRV 647 (1045)
Q Consensus 620 ~~~V~vyrl~t~~tiEE~~~~~~k~~~~ 647 (1045)
+++|.+|++++.+|+||.+....++|.-
T Consensus 603 ~~~v~v~~~~~~~t~ee~i~~~~~~k~~ 630 (968)
T 3dmq_A 603 AHDIQIHVPYLEKTAQSVLVRWYHEGLD 630 (968)
T ss_dssp CSCCEEEEEEETTSHHHHHHHHHHHTTC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 8508999805777199999999986787
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=247.31 Aligned_cols=368 Identities=11% Similarity=0.021 Sum_probs=203.8
Q ss_pred CCEEEEECC-HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCC
Q ss_conf 968999381-1199999999995299997099980877776544210102110276699980688974004677777650
Q 001607 222 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 300 (1045)
Q Consensus 222 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dIVITTY~~L~~d~~~~~~~~~~~ 300 (1045)
+++|||||. +++.||.+|+.+|+..+..++..++|..... ........++|+|+||+.+......
T Consensus 53 ~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~------~~~~~~~~~~ivv~T~~~l~~~~~~-------- 118 (494)
T 1wp9_A 53 GKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPE------ERSKAWARAKVIVATPQTIENDLLA-------- 118 (494)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHH------HHHHHHHHCSEEEECHHHHHHHHHT--------
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHCCCHHHEEEEECCCCHH------HHHHHCCCCCEEEECHHHHHHHHHC--------
T ss_conf 85999978889999999999987475611168760775335------5665335798999639999999860--------
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHH--HHHHHH-HHCCCCEEEEECCCCCCCHHHHHHCCCCCCCC
Q ss_conf 234321024787521011223220771420013796889--999999-72348289982668889913541012346888
Q 001607 301 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA--ATEMAL-RLYAKHRWCITGTPIQRKLDDLYGLLRFLKSS 377 (1045)
Q Consensus 301 ~~~~r~~k~y~~~~s~L~~i~w~rVIlDEAH~iKN~~S~--~~~al~-~L~a~~Rw~LTGTPiqN~l~DL~~Ll~fL~p~ 377 (1045)
..+....|+.||+||||.+++..+. ....+. ..+..++|+|||||. ++..+++.++.++.+.
T Consensus 119 --------------~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~ 183 (494)
T 1wp9_A 119 --------------GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIE 183 (494)
T ss_dssp --------------TSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCC
T ss_pred --------------CCCCHHHCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHH
T ss_conf --------------8715654108999787566888819999999973288776999956998-8857899999850700
Q ss_pred CCC---CHHHHHHHHCCCCC-----CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf 999---83789999719876-----8843269999999877653202333335579999618999951999999999999
Q 001607 378 PFS---ISRWWIEVIRDPYE-----NGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 449 (1045)
Q Consensus 378 ~~~---~~~~f~~~~~~p~~-----~~~~~~~~~L~~~L~~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Er~~Y~~~ 449 (1045)
... ....+...+..+.. ...+.....+...+.+++.++.+......+ +++.. ..++..+.......
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~ 257 (494)
T 1wp9_A 184 HIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGL-LESSS-----PDIPKKEVLRAGQI 257 (494)
T ss_dssp EEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTS-SSCCC-----TTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCC-----CCCCHHHHHHHHHH
T ss_conf 0502678758788752787426895688588999999898999999999997355-65457-----77335578999999
Q ss_pred HHHHHHH--------H--HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--
Q ss_conf 9998879--------9--999999999886404899988887757100236599999999999998069878888854--
Q 001607 450 HETCVGY--------A--REVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLR-- 517 (1045)
Q Consensus 450 ~~~~~~~--------~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~il~~L~rLRQiC~HP~L~~~~~~-- 517 (1045)
....... . ......+..... .+.......+...+..|...|.|+........
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (494)
T 1wp9_A 258 INEEMAKGNHDLRGLLLYHAMALKLHHAIE----------------LLETQGLSALRAYIKKLYEEAKAGSTKASKEIFS 321 (494)
T ss_dssp HHHHHTTTCCSTTTHHHHHHHHHHHHHHHH----------------HHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHH----------------HHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 998753356311347999988888999999----------------9985257999999999987522321145566665
Q ss_pred -----C---------CCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHH------
Q ss_conf -----4---------5689999999999999998985245101277766468779999986879898---9999------
Q 001607 518 -----S---------LQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVS---LYKE------ 574 (1045)
Q Consensus 518 -----~---------~~~~~~t~~eiL~~Ll~~~~~e~~~~~rkvl~~sq~~a~l~ii~~~~~~a~~---~y~~------ 574 (1045)
. ........-+.+..++.+.... ....++++|+++...+..+...+..... .+.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~ 399 (494)
T 1wp9_A 322 DKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQR--KQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEN 399 (494)
T ss_dssp SHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH--CTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC--
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC--CCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf 0788989999998874589986999999999998436--89975999976689999999999975998079965665444
Q ss_pred --HH--HHHHHHHHCCCCCCCCCC-----------------EEEEECCCCCCCHHHHHH-HHHHCCCCCCEEEEECCCCC
Q ss_conf --99--999998410178977671-----------------147607867820023454-53204898762787511058
Q 001607 575 --AM--AVVEEHSEDFRLDPLLNI-----------------HLHHNLTEILPMVANCAT-ELSQNEQHFPGCSEKAFKIH 632 (1045)
Q Consensus 575 --~l--~~~~~~~~~f~~d~~~~l-----------------h~~~nl~~wnp~~~~QA~-R~hRiGQ~~~V~vyrl~t~~ 632 (1045)
.+ ..+++..+.|+.+....+ ++.+++ +|||+...|+. |++|+|| +.+|++++.+
T Consensus 400 ~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~-~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~ 475 (494)
T 1wp9_A 400 DRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEP-VPSAIRSIQRRGRTGRHMP---GRVIILMAKG 475 (494)
T ss_dssp -----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSC-CHHHHHHHHHHTTSCSCCC---SEEEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHCCEEEEECC-CCCHHHHHHHHHHCCCCCC---CEEEEEEECC
T ss_conf 44589999999999986699469998884125887143798999289-8878999998752257788---4699999569
Q ss_pred CCCCCCHHHHHHHC
Q ss_conf 73213046754210
Q 001607 633 SIETCDENARKCQR 646 (1045)
Q Consensus 633 tiEE~~~~~~k~~~ 646 (1045)
|+||.+...+.+|.
T Consensus 476 t~ee~~~~~~~~k~ 489 (494)
T 1wp9_A 476 TRDEAYYWSSRQKE 489 (494)
T ss_dssp SHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHHH
T ss_conf 87899999888789
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=231.46 Aligned_cols=309 Identities=13% Similarity=0.085 Sum_probs=187.3
Q ss_pred CCEEEEECC-HHHHHHHHHHHHHCCCCCCE-EEEEECCCCCCCCCCCCCCHHHHCCCCEEEEEHHHHHHHCCCCCCCCCC
Q ss_conf 968999381-11999999999952999970-9998087777654421010211027669998068897400467777765
Q 001607 222 GATLIVCPA-PILAQWDAEITRHTRPGSLK-TCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 299 (1045)
Q Consensus 222 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~l~-v~vy~G~~~~~~~~~~~~~~~~l~~~dIVITTY~~L~~d~~~~~~~~~~ 299 (1045)
+++|||||. +|+.||.+++.+ + .++ +.+++|.... ..+|+|+||+.+......
T Consensus 134 ~~~Lvl~P~~~L~~Q~~~~~~~-~---~~~~v~~~~g~~~~--------------~~~Ivv~T~~~l~~~~~~------- 188 (472)
T 2fwr_A 134 TPTLIVVPTLALAEQWKERLGI-F---GEEYVGEFSGRIKE--------------LKPLTVSTYDSAYVNAEK------- 188 (472)
T ss_dssp SCEEEEESSHHHHHHHHHHGGG-G---CGGGEEEBSSSCBC--------------CCSEEEEEHHHHHHTHHH-------
T ss_pred CCEEEEECCHHHHHHHHHHHHH-C---CCCCEEEECCCCCC--------------CCCEEEEECHHHHHHHHH-------
T ss_conf 9999998799999999999996-7---99636998787677--------------677899976899977997-------
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCCCCCCCCC
Q ss_conf 02343210247875210112232207714200137968899999997234828998266888991354101234688899
Q 001607 300 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 379 (1045)
Q Consensus 300 ~~~~~r~~k~y~~~~s~L~~i~w~rVIlDEAH~iKN~~S~~~~al~~L~a~~Rw~LTGTPiqN~l~DL~~Ll~fL~p~~~ 379 (1045)
+ .-.|..||+||+|.+.++... ..+..+.+.+++++||||..++-.+
T Consensus 189 -----------------~-~~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~------------- 235 (472)
T 2fwr_A 189 -----------------L-GNRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLGLTATFEREDGRH------------- 235 (472)
T ss_dssp -----------------H-TTTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEEEESCCCCTTSGG-------------
T ss_pred -----------------H-CCCCCEEEEECCCCCCCHHHH--HHHHHCCCCEEEEEECCCCCCCCHH-------------
T ss_conf -----------------3-687778999897578976899--9997357781899932766889778-------------
Q ss_pred CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98378999971987688432699999998776532023333355799996189999519999999999999998879999
Q 001607 380 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYARE 459 (1045)
Q Consensus 380 ~~~~~f~~~~~~p~~~~~~~~~~~L~~~L~~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Er~~Y~~~~~~~~~~~~~ 459 (1045)
..+..++.+.+.+....++... -+++.....+.+++++.++..|..+......
T Consensus 236 ----------------------~~l~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 288 (472)
T 2fwr_A 236 ----------------------EILKEVVGGKVFELFPDSLAGK-HLAKYTIKRIFVPLAEDERVEYEKREKVYKQ---- 288 (472)
T ss_dssp ----------------------GSHHHHTCCEEEECCHHHHTSC-CCCSEEECCEEECCCHHHHHHTTTTTHHHHS----
T ss_pred ----------------------HHHHHHHCCEEEECCHHHHHCC-CCCCEEEEEEECCCCHHHHHHHHHHHHHHHH----
T ss_conf ----------------------9999972985765478987067-6788189999858998999999999999999----
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999886404899988887757100---2365999999999999980698788888544568999999999999999
Q 001607 460 VIQRLKDNILKRNVPGHASSDALYNPII---THAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGK 536 (1045)
Q Consensus 460 ~~~~~~~~~~~~~~~g~~~~~~~~~~~l---~~~~~~~il~~L~rLRQiC~HP~L~~~~~~~~~~~~~t~~eiL~~Ll~~ 536 (1045)
.+...........+...... ........+......+.++++.. ..-+.+..++..
T Consensus 289 --------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~k~~~l~~~l~~ 346 (472)
T 2fwr_A 289 --------FLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSK--------------NKIRKLREILER 346 (472)
T ss_dssp --------CSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCS--------------HHHHHHHHHHHH
T ss_pred --------HHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCH--------------HHHHHHHHHHHH
T ss_conf --------9986475422446689999872369889999999999999763373--------------899999999985
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----------------CCCEEEEE
Q ss_conf 8985245101277766468779999986879898999999999998410178977-----------------67114760
Q 001607 537 TKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPL-----------------LNIHLHHN 599 (1045)
Q Consensus 537 ~~~e~~~~~rkvl~~sq~~a~l~ii~~~~~~a~~~y~~~l~~~~~~~~~f~~d~~-----------------~~lh~~~n 599 (1045)
....++++|++....++.+...+.............+++..+.|+.+.. ...++.++
T Consensus 347 ------~~~~k~lvF~~~~~~~~~l~~~l~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~ 420 (472)
T 2fwr_A 347 ------HRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMS 420 (472)
T ss_dssp ------TSSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEEC
T ss_pred ------CCCCCEEEEECCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHCCCCCEEEECCCHHCCCCCCCCCEEEEEC
T ss_conf ------78983899979799999999974865562899999999999998679988899857051484620286899989
Q ss_pred CCCCCCCHHHHHH-HHHHCCCC-CCEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 7867820023454-53204898-762787511058732130467542
Q 001607 600 LTEILPMVANCAT-ELSQNEQH-FPGCSEKAFKIHSIETCDENARKC 644 (1045)
Q Consensus 600 l~~wnp~~~~QA~-R~hRiGQ~-~~V~vyrl~t~~tiEE~~~~~~k~ 644 (1045)
.. |+|+...|+. |++|+||. +.|.+|.+++++|+||.+....+.
T Consensus 421 ~~-~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~ 466 (472)
T 2fwr_A 421 GS-GSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKN 466 (472)
T ss_dssp CS-SCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC----------
T ss_pred CC-CCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHH
T ss_conf 99-98889999876315777998539999998199853799999987
No 7
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=1.00 E-value=1 Score=204.37 Aligned_cols=206 Identities=16% Similarity=0.140 Sum_probs=146.5
Q ss_pred HHHHHCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH
Q ss_conf 76532023333355799996189999519999999999999998879999999999988640489998888775710023
Q 001607 410 EIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITH 489 (1045)
Q Consensus 410 ~~mlRRtK~dV~~el~LPpk~e~vv~v~lS~~Er~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~ 489 (1045)
.--+||+|++|..+ |||+.+.+++|+||+.|+++|+.+.+....... . .. ..
T Consensus 11 ~~~~rr~k~~v~~~--LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~------------~-------~~-------~~ 62 (271)
T 1z5z_A 11 SSGLVPRGSHMASD--LPDKIETNVYCNLTPEQAAMYKAEVENLFNNID------------S-------VT-------GI 62 (271)
T ss_dssp -------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTT------------T-------CC-------HH
T ss_pred CCCCCCCHHHHHHH--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH------------H-------CC-------CC
T ss_conf 55641648778751--999779999818999999999999999999997------------4-------03-------52
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 6599999999999998069878888854456899999999999999989852451012777664687799999868798-
Q 001607 490 AEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQA- 568 (1045)
Q Consensus 490 ~~~~~il~~L~rLRQiC~HP~L~~~~~~~~~~~~~t~~eiL~~Ll~~~~~e~~~~~rkvl~~sq~~a~l~ii~~~~~~a- 568 (1045)
.....+++.+++|||+||||.+...+.. . ......-+.|..++.+.... .+++++|+++..++++|...+...
T Consensus 63 ~~~~~~l~~l~~Lrq~~~hP~l~~~~~~-~-~~~s~K~~~L~~ll~~~~~~----~~kvlIFs~~~~~~~~l~~~L~~~~ 136 (271)
T 1z5z_A 63 KRKGMILSTLLKLKQIVDHPALLKGGEQ-S-VRRSGKMIRTMEIIEEALDE----GDKIAIFTQFVDMGKIIRNIIEKEL 136 (271)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHCSCC-C-STTCHHHHHHHHHHHHHHHT----TCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHCCCCC-C-CCCCHHHHHHHHHHHHHHHC----CCEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 1288999999999998489988468732-2-34689999999999999867----9969999551999999999998733
Q ss_pred HH---HHHHH--HHHHHHHHHCCCCCCCCC--C-----------------EEEEECCCCCCCHHHHHH-HHHHCCCCCCE
Q ss_conf 98---99999--999999841017897767--1-----------------147607867820023454-53204898762
Q 001607 569 VS---LYKEA--MAVVEEHSEDFRLDPLLN--I-----------------HLHHNLTEILPMVANCAT-ELSQNEQHFPG 623 (1045)
Q Consensus 569 ~~---~y~~~--l~~~~~~~~~f~~d~~~~--l-----------------h~~~nl~~wnp~~~~QA~-R~hRiGQ~~~V 623 (1045)
.. .+.+. ...+++.++.|+.++-.. + ++.+++ +|||+.+.||+ |+||+||+++|
T Consensus 137 g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~-~wnp~~~~Q~~gR~~R~Gq~~~v 215 (271)
T 1z5z_A 137 NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDR-WWNPAVEDQATDRVYRIGQTRNV 215 (271)
T ss_dssp CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSC-CSCTTTC--------------CC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCCCCCCEEEEECC-CCCHHHHHHHHHHCCCCCCCCCE
T ss_conf 98479997999999999999983289999789972235158867644899999799-99851899999852323899856
Q ss_pred EEEECCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 787511058732130467542102545
Q 001607 624 CSEKAFKIHSIETCDENARKCQRVSRE 650 (1045)
Q Consensus 624 ~vyrl~t~~tiEE~~~~~~k~~~~~~~ 650 (1045)
.||++++.+||||.+...+.+|.-...
T Consensus 216 ~v~~li~~~TiEe~i~~~~~~K~~l~~ 242 (271)
T 1z5z_A 216 IVHKLISVGTLEEKIDQLLAFKRSLFK 242 (271)
T ss_dssp EEEEEEETTSHHHHHHHHHHHCHHHHT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 999985498899999999999999999
No 8
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=200.39 Aligned_cols=350 Identities=11% Similarity=0.031 Sum_probs=179.3
Q ss_pred CCCEEEEECCH-HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHCCCCEEEEEHHHHHHHCCCCCCCCCC
Q ss_conf 99689993811-19999999999529999709998087777654421010211027669998068897400467777765
Q 001607 221 TGATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 299 (1045)
Q Consensus 221 ~~~tLIV~P~S-Ll~QW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dIVITTY~~L~~d~~~~~~~~~~ 299 (1045)
.+++|||||.. |+.||.+++.++++...+++..++|....... .......++|+|+||+.+...+...
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~-----~~~~~~~~~IvI~Tp~~L~~~l~~~------ 364 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVS-----VEKVIEDSDIIVVTPQILVNSFEDG------ 364 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----C-----CHHHHHHCSEEEECHHHHHHHHHSS------
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH-----HHHHCCCCCEEEECHHHHHHHHHCC------
T ss_conf 98599996989999999999999712169559999799631257-----8974169999994499999998717------
Q ss_pred CHHHHHHCCCCCCCCCCC-CCCCCCEEEECCCCCCCCHHHHHHHHHHHHC--------CCCEEEEECCCCCCCHHH----
Q ss_conf 023432102478752101-1223220771420013796889999999723--------482899826688899135----
Q 001607 300 DRRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNAAAATEMALRLY--------AKHRWCITGTPIQRKLDD---- 366 (1045)
Q Consensus 300 ~~~~~r~~k~y~~~~s~L-~~i~w~rVIlDEAH~iKN~~S~~~~al~~L~--------a~~Rw~LTGTPiqN~l~D---- 366 (1045)
.+ ..-.|..||+||||.+.+..+....+...+. ...++++||||.+++..+
T Consensus 365 ----------------~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~ 428 (936)
T 4a2w_A 365 ----------------TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEET 428 (936)
T ss_dssp ----------------SCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHH
T ss_pred ----------------CCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHH
T ss_conf ----------------6453367879999873135998669999999999863137886739986388554540208999
Q ss_pred ------HHHCCCCCCCCC-CCCHHHHHHHHCCCCCCC------CH-H---HH----HHHHHHHHHHHH------------
Q ss_conf ------410123468889-998378999971987688------43-2---69----999999877653------------
Q 001607 367 ------LYGLLRFLKSSP-FSISRWWIEVIRDPYENG------DV-G---AM----EFTHKFFKEIMC------------ 413 (1045)
Q Consensus 367 ------L~~Ll~fL~p~~-~~~~~~f~~~~~~p~~~~------~~-~---~~----~~L~~~L~~~ml------------ 413 (1045)
|+..+..-.... ......+...+..|.... .. . .+ ..+..++..++-
T Consensus 429 ~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~ 508 (936)
T 4a2w_A 429 IEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDF 508 (936)
T ss_dssp HHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CC
T ss_pred HHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999854971553465448999875367762377336556757999999999999999998876655532022332
Q ss_pred ----------HCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH------------------HHHHHHH
Q ss_conf ----------202333335579999618999951999999999999999887999------------------9999999
Q 001607 414 ----------RSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAR------------------EVIQRLK 465 (1045)
Q Consensus 414 ----------RRtK~dV~~el~LPpk~e~vv~v~lS~~Er~~Y~~~~~~~~~~~~------------------~~~~~~~ 465 (1045)
...+.... ..+|. ...+..+|..+... ....+ ..+..+.
T Consensus 509 g~~~y~~~l~~l~k~~~~--~~l~~----------~~~~~~~~~~l~~~-~~~l~~~~~al~i~~~~~~~~~~~~l~~~~ 575 (936)
T 4a2w_A 509 GTQNYEHWIVVTQRKCRL--LQLED----------KEEESRICRALFIC-TEHLRKYNDALIISEDARIIDALSYLTEFF 575 (936)
T ss_dssp SSHHHHHHHHHHHHHHHH--CCCSC----------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH--HCCCC----------CCHHHHHHHHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 257799999999998877--40553----------21035799999999-999999888875002042888999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98864048999888877571002365999999999999980698788888544568999999999999999898524510
Q 001607 466 DNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEAL 545 (1045)
Q Consensus 466 ~~~~~~~~~g~~~~~~~~~~~l~~~~~~~il~~L~rLRQiC~HP~L~~~~~~~~~~~~~t~~eiL~~Ll~~~~~e~~~~~ 545 (1045)
...... +... ....-...+...+..|...+..|...+ ..-+.|..++.+... ....
T Consensus 576 ~~~~~~---------~~~~--~e~~l~~~~~~~~~~l~~~~~~~~~~~-----------~K~~~L~~lL~~~~~--~~~~ 631 (936)
T 4a2w_A 576 TNVKNG---------PYTE--LEQHLTAKFQEKEPELIALSKDETNEN-----------PKLEELVCILDDAYR--YNPQ 631 (936)
T ss_dssp HHHHHT---------TCCH--HHHHHHHHHHHHHHHHHHHHTSTTCCC-----------HHHHHHHHHHHHTTT--SCTT
T ss_pred HHHHHC---------CCCH--HHHHHHHHHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHHHC--CCCC
T ss_conf 987632---------5887--899999989999999997640567789-----------799999999999853--5899
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHH--HHHHHHHHCCCC-CCCC---------------
Q ss_conf 12777664687799999868798---------------98999999--999998410178-9776---------------
Q 001607 546 RKLVMALNGLAGIALIEKNLSQA---------------VSLYKEAM--AVVEEHSEDFRL-DPLL--------------- 592 (1045)
Q Consensus 546 rkvl~~sq~~a~l~ii~~~~~~a---------------~~~y~~~l--~~~~~~~~~f~~-d~~~--------------- 592 (1045)
.++++|+++..+++.|...+... ...+.+.+ ..+.+..+.|+. +...
T Consensus 632 ~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp 711 (936)
T 4a2w_A 632 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIV 711 (936)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CC
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHCCCCCH
T ss_conf 74999969799999999998637353666616996578765678889999999999863159815999807264277605
Q ss_pred --CCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC
Q ss_conf --7114760786782002345453204898762787511058732130
Q 001607 593 --NIHLHHNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCD 638 (1045)
Q Consensus 593 --~lh~~~nl~~wnp~~~~QA~R~hRiGQ~~~V~vyrl~t~~tiEE~~ 638 (1045)
..++.|++. |||....|+. -| ||.+++.+|.+++.+|+||..
T Consensus 712 ~v~~VI~yD~p-~s~~~~iQr~--GR-GR~~~g~vi~Li~~~t~ee~~ 755 (936)
T 4a2w_A 712 QCNLVVLYEYS-GNVTKMIQVR--GR-GRAAGSKCILVTSKTEVVENE 755 (936)
T ss_dssp CCSEEEEESCC-SCSHHHHCC----------CCCEEEEESCHHHHHHH
T ss_pred HCCEEEEECCC-CCHHHHHHHC--CC-CCCCCCEEEEEEECCCHHHHH
T ss_conf 58989993899-9889999964--87-788887799998698899999
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=191.16 Aligned_cols=355 Identities=11% Similarity=0.042 Sum_probs=174.6
Q ss_pred CCCEEEEECC-HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHCCCCEEEEEHHHHHHHCCCCCCCCCC
Q ss_conf 9968999381-119999999999529999709998087777654421010211027669998068897400467777765
Q 001607 221 TGATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 299 (1045)
Q Consensus 221 ~~~tLIV~P~-SLl~QW~~Ei~k~~~~~~l~v~vy~G~~~~~~~~~~~~~~~~l~~~dIVITTY~~L~~d~~~~~~~~~~ 299 (1045)
.+++|||||. +|..||.+++.+++....+++..++|....... .......++|+|+|++.+...+...
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~-----~~~~~~~~~Ivv~Tp~~l~~~l~~~------ 364 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVS-----VEKVIEDSDIIVVTPQILVNSFEDG------ 364 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----C-----HHHHHHTCSEEEECHHHHHHHHHSS------
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHH-----HHHHHCCCCEEEECHHHHHHHHHHC------
T ss_conf 99699996989999999999998614379469999699623246-----9974079999997669999999826------
Q ss_pred CHHHHHHCCCCCCCCCCC-CCCCCCEEEECCCCCCCCHHHHHHHHHHHHC--------CCCEEEEECCCCCCCHH-----
Q ss_conf 023432102478752101-1223220771420013796889999999723--------48289982668889913-----
Q 001607 300 DRRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNAAAATEMALRLY--------AKHRWCITGTPIQRKLD----- 365 (1045)
Q Consensus 300 ~~~~~r~~k~y~~~~s~L-~~i~w~rVIlDEAH~iKN~~S~~~~al~~L~--------a~~Rw~LTGTPiqN~l~----- 365 (1045)
.+ ..-.|..||+||||.+.+.......+...+. ...++++||||.+++..
T Consensus 365 ----------------~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~ 428 (797)
T 4a2q_A 365 ----------------TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEET 428 (797)
T ss_dssp ----------------SCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHH
T ss_pred ----------------CCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHH
T ss_conf ----------------5465133778999886355887649999999999763147887859997277554552248999
Q ss_pred -----HHHHCCCCCCCCC-CCCHHHHHHHHCCCCCCC------CHH--------HHHHHHHHHHHHHH------------
Q ss_conf -----5410123468889-998378999971987688------432--------69999999877653------------
Q 001607 366 -----DLYGLLRFLKSSP-FSISRWWIEVIRDPYENG------DVG--------AMEFTHKFFKEIMC------------ 413 (1045)
Q Consensus 366 -----DL~~Ll~fL~p~~-~~~~~~f~~~~~~p~~~~------~~~--------~~~~L~~~L~~~ml------------ 413 (1045)
+|+..+.+-.... ......+...+..|.... ... .+..+..++..++-
T Consensus 429 ~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~ 508 (797)
T 4a2q_A 429 IEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDF 508 (797)
T ss_dssp HHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CC
T ss_pred HHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999854984885454317889973588854888457777867899999999999999999875677653000011
Q ss_pred ----------HCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC------
Q ss_conf ----------2023333355799996189999519999999999999998879999999999988640489998------
Q 001607 414 ----------RSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHA------ 477 (1045)
Q Consensus 414 ----------RRtK~dV~~el~LPpk~e~vv~v~lS~~Er~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------ 477 (1045)
...+... ...+|. ...+...|..+.. +....+. +..........+..
T Consensus 509 g~~~~~~~~~~~~~~~~--~~~~~~----------~~~~~~~~~~l~~-~~~~l~~----~~~~~~~~~~~~~~~~~~~l 571 (797)
T 4a2q_A 509 GTQNYEHWIVVTQRKCR--LLQLED----------KEEESRICRALFI-CTEHLRK----YNDALIISEDARIIDALSYL 571 (797)
T ss_dssp SSHHHHHHHHHHHHHHH--HCCCSS----------HHHHHHHHHHHHH-HHHHHHH----HHHHHHHHHHSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH--HHCCCC----------CCHHHHHHHHHHH-HHHHHHH----HHHHHHHHCCCCHHHHHHHH
T ss_conf 40567789999999877--740343----------2025679999999-9999999----99887654132588899999
Q ss_pred -------CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf -------8887757100236599999999999998069878888854456899999999999999989852451012777
Q 001607 478 -------SSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVM 550 (1045)
Q Consensus 478 -------~~~~~~~~~l~~~~~~~il~~L~rLRQiC~HP~L~~~~~~~~~~~~~t~~eiL~~Ll~~~~~e~~~~~rkvl~ 550 (1045)
...+... ....-.......+..+...+..|... ...-+.|..++.+... .....++++
T Consensus 572 ~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~l~~~~~~~~~~-----------~~K~~~L~~lL~~~~~--~~~~~kvLI 636 (797)
T 4a2q_A 572 TEFFTNVKNGPYTE--LEQHLTAKFQEKEPELIALSKDETNE-----------NPKLEELVCILDDAYR--YNPQTRTLL 636 (797)
T ss_dssp HHHHHHHHHTTCCH--HHHHHHHHHHTTHHHHHHHHHCTTCC-----------CHHHHHHHHHHHHHHH--HCSSCCEEE
T ss_pred HHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHHHHCCCCCC-----------CHHHHHHHHHHHHHHC--CCCCCEEEE
T ss_conf 99999875047668--99999999999999998763078889-----------9599999999999850--589970899
Q ss_pred HHHHHHHHHHHHHHHHHH---------------HHHHHHHH--HHHHHHHHCCCC-CCCCC-----------------CE
Q ss_conf 664687799999868798---------------98999999--999998410178-97767-----------------11
Q 001607 551 ALNGLAGIALIEKNLSQA---------------VSLYKEAM--AVVEEHSEDFRL-DPLLN-----------------IH 595 (1045)
Q Consensus 551 ~sq~~a~l~ii~~~~~~a---------------~~~y~~~l--~~~~~~~~~f~~-d~~~~-----------------lh 595 (1045)
|+++..+.+.+...+... ...+.+.+ ..+.+..+.|+. +.... .+
T Consensus 637 F~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~V 716 (797)
T 4a2q_A 637 FAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLV 716 (797)
T ss_dssp EESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEE
T ss_pred EECCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHCCCCCHHCCEE
T ss_conf 97958999999999974756466552189844775457898999999999985136970499974805447975108989
Q ss_pred EEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 4760786782002345453204898762787511058732130
Q 001607 596 LHHNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCD 638 (1045)
Q Consensus 596 ~~~nl~~wnp~~~~QA~R~hRiGQ~~~V~vyrl~t~~tiEE~~ 638 (1045)
+.|++. |||....|+. -| ||.+++.+|.|++.+++||..
T Consensus 717 I~yd~p-~s~~~~iQr~--GR-GR~~~g~~i~l~~~~~~ee~~ 755 (797)
T 4a2q_A 717 VLYEYS-GNVTKMIQVR--GR-GRAAGSKCILVTSKTEVVENE 755 (797)
T ss_dssp EEESCC-SCHHHHHTC----------CCCEEEEECCHHHHHHH
T ss_pred EEECCC-CCHHHHHHHC--CC-CCCCCCEEEEEEECCCHHHHH
T ss_conf 994899-9889999853--88-878786599997287688999
No 10
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=1.00 E-value=1 Score=181.99 Aligned_cols=196 Identities=10% Similarity=-0.040 Sum_probs=129.5
Q ss_pred CCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 79999618999951999999999999999887999999999998864048999888877571002365999999999999
Q 001607 424 LQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLR 503 (1045)
Q Consensus 424 l~LPpk~e~vv~v~lS~~Er~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~il~~L~rLR 503 (1045)
+..|++.|++++++||+.|+++|+.+.......+.+.+.. . .+. +..-..++.+.++.||
T Consensus 18 ~~~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~--------~-------~~~-----~~~~~~sl~nli~qLR 77 (328)
T 3hgt_A 18 ISGNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFET--------S-------HYK-----EDVILESMKTMCLNGS 77 (328)
T ss_dssp ----CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHT--------T-------TTC-----CHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHC--------C-------CCC-----CCHHHHHHHHHHHHHH
T ss_conf 7789885499954788899999999999649999999706--------7-------876-----4218999999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCC----------CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98069878888854456899----------99999999999998985245101277766468779999986879898999
Q 001607 504 QACCHPQVGSSGLRSLQQSP----------LSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYK 573 (1045)
Q Consensus 504 QiC~HP~L~~~~~~~~~~~~----------~t~~eiL~~Ll~~~~~e~~~~~rkvl~~sq~~a~l~ii~~~~~~a~~~y~ 573 (1045)
++||||+|+........... ...-.+|+.|+.+++.. ++++++|+|++.+++++++.+......|.
T Consensus 78 kicnHP~L~~d~~~p~~~~~~~~~~~l~~~SGKf~~L~~LL~~l~~~----~~kVLIfsq~t~~LDilE~~l~~~~~~y~ 153 (328)
T 3hgt_A 78 LVATHPYLLIDHYMPKSLITRDVPAHLAENSGKFSVLRDLINLVQEY----ETETAIVCRPGRTMDLLEALLLGNKVHIK 153 (328)
T ss_dssp HHHHCGGGTCCTTCCSCSCSTTHHHHHHHTCHHHHHHHHHHHHHTTS----CEEEEEEECSTHHHHHHHHHHTTSSCEEE
T ss_pred HHCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHC----CCEEEEEECCHHHHHHHHHHHHCCCCCEE
T ss_conf 87389103105457766444430468998495299999999999858----99799997981699999999952898547
Q ss_pred HHHH---HHHHHHHCCC----CCCC---------------CCCEEEEECCCCCCCHH-HHHH-HHHHC--CCCCCEEEEE
Q ss_conf 9999---9999841017----8977---------------67114760786782002-3454-53204--8987627875
Q 001607 574 EAMA---VVEEHSEDFR----LDPL---------------LNIHLHHNLTEILPMVA-NCAT-ELSQN--EQHFPGCSEK 627 (1045)
Q Consensus 574 ~~l~---~~~~~~~~f~----~d~~---------------~~lh~~~nl~~wnp~~~-~QA~-R~hRi--GQ~~~V~vyr 627 (1045)
...+ ..+.....+. +-+. ....+.++- +|||++| .||+ ||||| ||+++|.|||
T Consensus 154 RlDG~~~~~~~k~~~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~~Ds-dwNp~~d~iQa~~r~~R~~~gq~k~v~V~R 232 (328)
T 3hgt_A 154 RYDGHSIKSAAAANDFSCTVHLFSSEGINFTKYPIKSKARFDMLICLDT-TVDTSQKDIQYLLQYKRERKGLERYAPIVR 232 (328)
T ss_dssp ESSSCCC-------CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEECST-TCCTTSHHHHHHHCCC---------CCEEE
T ss_pred ECCCCCHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECC-CCCCCCHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 1799963544302368816999878877775765334788888999789-989898589999998641158997064999
Q ss_pred CCCCCCCCCCCHHHHHH
Q ss_conf 11058732130467542
Q 001607 628 AFKIHSIETCDENARKC 644 (1045)
Q Consensus 628 l~t~~tiEE~~~~~~k~ 644 (1045)
|++.+||||.+++..|.
T Consensus 233 Lvt~~TiEh~~l~~~~~ 249 (328)
T 3hgt_A 233 LVAINSIDHCRLFFGKK 249 (328)
T ss_dssp EEETTSHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHCCCC
T ss_conf 94899999999880688
Done!