BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001612
(1044 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 130 bits (326), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 183/712 (25%), Positives = 286/712 (40%), Gaps = 90/712 (12%)
Query: 313 MLSNTNFSGVLPDSIGNLK---NLSRLDLALCYFDGSIPT--SLANLTQLVYLDLSFN-- 365
LSN++ +G S+ K +L+ LDL+ G + T SL + + L +L++S N
Sbjct: 80 FLSNSHING----SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 135
Query: 366 KFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDW---EHLSNLVYVDLRYNSLNGSIPGS 422
F G + +L LDLS N++ GA + W + L ++ + N ++G + S
Sbjct: 136 DFPGKVSGGLKLNSLEVLDLSANSISGA-NVVGWVLSDGCGELKHLAISGNKISGDVDVS 194
Query: 423 LFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILI 482
L+ L ++ N F IP + S AL +D+SGN+L G +I LK+L
Sbjct: 195 --RCVNLEFLDVSSNNFSTGIPFLGDCS--ALQHLDISGNKLSGDFSRAISTCTELKLLN 250
Query: 483 LSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN 542
+SSN+ G + ++ L L+ E + F ++ +C
Sbjct: 251 ISSNQFVGPIPPLPLKSLQYLSLAE-------------NKFTGEIPDFLSGACD------ 291
Query: 543 LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVXXXXXXXXXXXXXXXXRPF-SISDLSPIT 601
L LDLS N G +P + G+ P ++ + +
Sbjct: 292 -----TLTGLDLSGNHFYGAVPPF---FGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 343
Query: 602 VLDLHSNQLQGNIPYP----PPKAVLVDYSNNSFTSSI-PDDIGXXXXXXXXXXXXXXXI 656
VLDL N+ G +P + +D S+N+F+ I P+
Sbjct: 344 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 403
Query: 657 TGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGN 716
TG IP TL L+ L LS N LSG +P+ L +S+ L L L N L G +
Sbjct: 404 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYV 462
Query: 717 CGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENIXXXXXXXXXXNS 776
L TL L+ N L G +P L+NC NL + L NN++ P W+ + NS
Sbjct: 463 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 522
Query: 777 FYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNF----KDV 832
F GNI E GD L +DL +N F G +P AM + +NF + V
Sbjct: 523 FSGNIPA-ELGDCR-SLIWLDLNTNLFNGTIP-------AAMFKQSGKIAANFIAGKRYV 573
Query: 833 HFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHG 892
+ + + + + +G+ E + LS + + + G S+
Sbjct: 574 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 633
Query: 893 LNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQXXXXXXXXXXXXXXXXXVGKI 952
L++S N L+G IP IG++ L L+L N +SG IP + G+I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 953 PIST------------------------QLQSFLATSFEGNKGLCGPPLNVC 980
P + Q ++F F N GLCG PL C
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 745
Score = 127 bits (319), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 190/730 (26%), Positives = 272/730 (37%), Gaps = 191/730 (26%)
Query: 236 SLSVIRLDQNDLLSPVPEF--LADFFNLTSLRLSHSRLNGTFPEKI---LQVHTLETLDL 290
SL+ + L +N L PV L L L +S + L+ FP K+ L++++LE LDL
Sbjct: 98 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDL 155
Query: 291 SGNSLLQGSLPDFPKNSSLRTLMLSNTNFSG-VLPDSIGNLKNLSRLDLALCYFDGSIPT 349
S NS+ S N G VL D G LK+L A+ S
Sbjct: 156 SANSI-------------------SGANVVGWVLSDGCGELKHL-----AISGNKISGDV 191
Query: 350 SLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVD 409
++ L +LD+S N F IP L L HLD+S N L G S + L ++
Sbjct: 192 DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLN 250
Query: 410 LRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIP 469
+ N G IP L LQ L LAENKF G IP+F + + L +DLSGN G +P
Sbjct: 251 ISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Query: 470 M-------------------------SIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLA 504
++ +R LK+L LS N+ +G + + +L
Sbjct: 309 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 368
Query: 505 KLELSYNNLT----VNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQIS 560
L+LS NN + N + Q L+ ++ P L N S+L +L LS N +S
Sbjct: 369 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 428
Query: 561 GEIPNWVWEIGNVXXXXXXXXXXXXXXXXRPFSISDLSPITVLDLHSNQLQGNIPYPPPK 620
G IP+ +G++ P + + + L L N L G IP
Sbjct: 429 GTIPS---SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 485
Query: 621 AVLVDY---SNNSFTSSIPDDIGXXXXXXXXXXXXXXXITGVIPETLCRAKYLLVLDLSK 677
+++ SNN T IP IG +G IP L + L+ LDL+
Sbjct: 486 CTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 544
Query: 678 NKLSGKMPTCLIKMS--------------------------------EILGVLNLRGNSL 705
N +G +P + K S E G+ + + N L
Sbjct: 545 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 604
Query: 706 S-------------GTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNK 752
S G S TF N + LD++ N L G +PK + + L +L+LG+N
Sbjct: 605 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 664
Query: 753 IRDTFPWWLENIXXXXXXXXXXNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCI 812
I + P E GD L I+DL+SN GR+PQ
Sbjct: 665 ISGSIP-------------------------DEVGD-LRGLNILDLSSNKLDGRIPQA-- 696
Query: 813 TSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFS 872
+ L++ T ID S
Sbjct: 697 -----------------------------------------------MSALTMLTEIDLS 709
Query: 873 RNNFDGPIPE 882
NN GPIPE
Sbjct: 710 NNNLSGPIPE 719
Score = 123 bits (308), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 164/530 (30%), Positives = 237/530 (44%), Gaps = 91/530 (17%)
Query: 68 SGVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPXXXXXXX 127
SG C + + LDLS S+S + + L S L+ LN++ N +
Sbjct: 91 SGFKC--SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD------------ 136
Query: 128 XXXXXXXXXAGFAGQIPIQVSG---MTRLVTLDLSSLNRFGAPLKLENPNLSG--LLQNL 182
P +VSG + L LDLS+ + GA N+ G L
Sbjct: 137 ---------------FPGKVSGGLKLNSLEVLDLSANSISGA-------NVVGWVLSDGC 174
Query: 183 AELRELYLDGANISAP-GIEWCQAL----------SSLVP------KLQVLSLSSCYLSG 225
EL+ L + G IS + C L S+ +P LQ L +S LSG
Sbjct: 175 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG 234
Query: 226 PIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKIL-QVHT 284
+++ L ++ + N + P+P +L L L+ ++ G P+ + T
Sbjct: 235 DFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDT 292
Query: 285 LETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLP-DSIGNLKNLSRLDLALCYF 343
L LDLSGN P F S L +L LS+ NFSG LP D++ ++ L LDL+ F
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 352
Query: 344 DGSIPTSLANLT-QLVYLDLSFNKFVGPI-PSL--HMSKNLTHLDLSYNALPGAISSTDW 399
G +P SL NL+ L+ LDLS N F GPI P+L + L L L N G I T
Sbjct: 353 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT-L 411
Query: 400 EHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDL 459
+ S LV + L +N L+G+IP SL SL L+ L+L N G IP+ L+T+ L
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ-ELMYVKTLETLIL 470
Query: 460 SGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGS 519
N L G IP + + NL + LS+N+L G + I RL NLA L+LS N+ + N
Sbjct: 471 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP-KWIGRLENLAILKLSNNSFSGN--- 526
Query: 520 DSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWE 569
P++ L C+ L LDL+ N +G IP +++
Sbjct: 527 ---IPAE-----LGDCR-----------SLIWLDLNTNLFNGTIPAAMFK 557
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 185/381 (48%), Gaps = 42/381 (11%)
Query: 139 FAGQIPIQVSGMT-RLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISA 197
F+G++P ++ ++ L+TLDLSS N F P+ PNL +N L+ELYL +
Sbjct: 352 FSGELPESLTNLSASLLTLDLSS-NNFSGPIL---PNLCQNPKN--TLQELYLQNNGFTG 405
Query: 198 ---PGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEF 254
P + C L SL LS YLSG I SL L L ++L N L +P+
Sbjct: 406 KIPPTLSNCSELVSL-------HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 458
Query: 255 LADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDF-PKNSSLRTLM 313
L L +L L + L G P + L + LS N+ L G +P + + +L L
Sbjct: 459 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS-NNRLTGEIPKWIGRLENLAILK 517
Query: 314 LSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLD-LSFNKFV---- 368
LSN +FSG +P +G+ ++L LDL F+G+IP ++ + + + ++ ++V
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 577
Query: 369 -GPIPSLHMSKNLTHLD---------LS-------YNALPGAISSTDWEHLSNLVYVDLR 411
G H + NL LS + + G +S +++ +++++D+
Sbjct: 578 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 637
Query: 412 YNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMS 471
YN L+G IP + S+P L L L N G IP+ L+ +DLS N+L+G IP +
Sbjct: 638 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-EVGDLRGLNILDLSSNKLDGRIPQA 696
Query: 472 IFDLRNLKILILSSNKLNGTV 492
+ L L + LS+N L+G +
Sbjct: 697 MSALTMLTEIDLSNNNLSGPI 717
Score = 103 bits (257), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 132/445 (29%), Positives = 193/445 (43%), Gaps = 72/445 (16%)
Query: 139 FAGQIPIQ-VSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISA 197
F+G++P+ + M L LDLS N F L NLS A L L L N S
Sbjct: 327 FSGELPMDTLLKMRGLKVLDLS-FNEFSGELPESLTNLS------ASLLTLDLSSNNFSG 379
Query: 198 PGI-EWCQALSSLVPK--LQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEF 254
P + CQ PK LQ L L + +G I P+L+ L + L N L +P
Sbjct: 380 PILPNLCQN-----PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 434
Query: 255 LADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKN-SSLRTLM 313
L L L+L + L G P++++ V TLETL L N L G +P N ++L +
Sbjct: 435 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL-TGEIPSGLSNCTNLNWIS 493
Query: 314 LSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPS 373
LSN +G +P IG L+NL+ L L+ F G+IP L + L++LDL+ N F G IP+
Sbjct: 494 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 553
Query: 374 LHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGS--LFSLPMLQQ 431
++ G I++ ++ YV ++ + + G+ L ++
Sbjct: 554 AMFKQS------------GKIAAN---FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 598
Query: 432 LQL-----------AENKFGGLI-PEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLK 479
QL +GG P F N S +D+S N L G IP I + L
Sbjct: 599 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF--LDMSYNMLSGYIPKEIGSMPYLF 656
Query: 480 ILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRV 539
IL L N ++G++ + L L L+LS N L D P + L +
Sbjct: 657 ILNLGHNDISGSIP-DEVGDLRGLNILDLSSNKL------DGRIPQAMSALTM------- 702
Query: 540 IPNLKNQSKLFNLDLSDNQISGEIP 564
L +DLS+N +SG IP
Sbjct: 703 ---------LTEIDLSNNNLSGPIP 718
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 138/321 (42%), Gaps = 30/321 (9%)
Query: 71 DCDEAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPXXXXXXXXXX 130
+C E ++ L LS +S I +S L SL L+ L L NM EIP
Sbjct: 413 NCSE---LVSLHLSFNYLSGTIPSS--LGSLSKLRDLKLWLNMLEG-EIPQELMYVKTLE 466
Query: 131 XXXXXXAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLA--ELREL 188
G+IP +S T L + LS+ NR L E P G L+NLA +L
Sbjct: 467 TLILDFNDLTGEIPSGLSNCTNLNWISLSN-NR----LTGEIPKWIGRLENLAILKLSNN 521
Query: 189 YLDGANISAPGIEWCQALSSLVPKLQVLS----LSSCYLSGPIHPSLAKLQSLSVIRLDQ 244
G NI A + C++L L + + + SG I + + I+ D
Sbjct: 522 SFSG-NIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 579
Query: 245 NDLLSPVPEFLADFFNLTSLRLSH--SRLNGTFPEKILQVHTLETLDLSGN--------S 294
L +F + S +L+ +R ++ HT T D +G+ +
Sbjct: 580 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 639
Query: 295 LLQGSLP-DFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLAN 353
+L G +P + L L L + + SG +PD +G+L+ L+ LDL+ DG IP +++
Sbjct: 640 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 699
Query: 354 LTQLVYLDLSFNKFVGPIPSL 374
LT L +DLS N GPIP +
Sbjct: 700 LTMLTEIDLSNNNLSGPIPEM 720
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 130 bits (326), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 183/712 (25%), Positives = 286/712 (40%), Gaps = 90/712 (12%)
Query: 313 MLSNTNFSGVLPDSIGNLK---NLSRLDLALCYFDGSIPT--SLANLTQLVYLDLSFN-- 365
LSN++ +G S+ K +L+ LDL+ G + T SL + + L +L++S N
Sbjct: 83 FLSNSHING----SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 138
Query: 366 KFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDW---EHLSNLVYVDLRYNSLNGSIPGS 422
F G + +L LDLS N++ GA + W + L ++ + N ++G + S
Sbjct: 139 DFPGKVSGGLKLNSLEVLDLSANSISGA-NVVGWVLSDGCGELKHLAISGNKISGDVDVS 197
Query: 423 LFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILI 482
L+ L ++ N F IP + S AL +D+SGN+L G +I LK+L
Sbjct: 198 --RCVNLEFLDVSSNNFSTGIPFLGDCS--ALQHLDISGNKLSGDFSRAISTCTELKLLN 253
Query: 483 LSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN 542
+SSN+ G + ++ L L+ E + F ++ +C
Sbjct: 254 ISSNQFVGPIPPLPLKSLQYLSLAE-------------NKFTGEIPDFLSGACD------ 294
Query: 543 LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVXXXXXXXXXXXXXXXXRPF-SISDLSPIT 601
L LDLS N G +P + G+ P ++ + +
Sbjct: 295 -----TLTGLDLSGNHFYGAVPPF---FGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346
Query: 602 VLDLHSNQLQGNIPYP----PPKAVLVDYSNNSFTSSI-PDDIGXXXXXXXXXXXXXXXI 656
VLDL N+ G +P + +D S+N+F+ I P+
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406
Query: 657 TGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGN 716
TG IP TL L+ L LS N LSG +P+ L +S+ L L L N L G +
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYV 465
Query: 717 CGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENIXXXXXXXXXXNS 776
L TL L+ N L G +P L+NC NL + L NN++ P W+ + NS
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
Query: 777 FYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNF----KDV 832
F GNI E GD L +DL +N F G +P AM + +NF + V
Sbjct: 526 FSGNIPA-ELGDCR-SLIWLDLNTNLFNGTIPA-------AMFKQSGKIAANFIAGKRYV 576
Query: 833 HFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHG 892
+ + + + + +G+ E + LS + + + G S+
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636
Query: 893 LNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQXXXXXXXXXXXXXXXXXVGKI 952
L++S N L+G IP IG++ L L+L N +SG IP + G+I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 953 PIST------------------------QLQSFLATSFEGNKGLCGPPLNVC 980
P + Q ++F F N GLCG PL C
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 748
Score = 127 bits (318), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 191/738 (25%), Positives = 277/738 (37%), Gaps = 192/738 (26%)
Query: 236 SLSVIRLDQNDLLSPVPEF--LADFFNLTSLRLSHSRLNGTFPEKI---LQVHTLETLDL 290
SL+ + L +N L PV L L L +S + L+ FP K+ L++++LE LDL
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDL 158
Query: 291 SGNSLLQGSLPDFPKNSSLRTLMLSNTNFSG-VLPDSIGNLKNLSRLDLALCYFDGSIPT 349
S NS+ S N G VL D G LK+L A+ S
Sbjct: 159 SANSI-------------------SGANVVGWVLSDGCGELKHL-----AISGNKISGDV 194
Query: 350 SLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVD 409
++ L +LD+S N F IP L L HLD+S N L G S + L ++
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLN 253
Query: 410 LRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIP 469
+ N G IP L LQ L LAENKF G IP+F + + L +DLSGN G +P
Sbjct: 254 ISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Query: 470 M-------------------------SIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLA 504
++ +R LK+L LS N+ +G + + +L
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371
Query: 505 KLELSYNNLT----VNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQIS 560
L+LS NN + N + Q L+ ++ P L N S+L +L LS N +S
Sbjct: 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431
Query: 561 GEIPNWVWEIGNVXXXXXXXXXXXXXXXXRPFSISDLSPITVLDLHSNQLQGNIPYPPPK 620
G IP+ +G++ P + + + L L N L G IP
Sbjct: 432 GTIPS---SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 621 AVLVDY---SNNSFTSSIPDDIGXXXXXXXXXXXXXXXITGVIPETLCRAKYLLVLDLSK 677
+++ SNN T IP IG +G IP L + L+ LDL+
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547
Query: 678 NKLSGKMPTCLIKMS--------------------------------EILGVLNLRGNSL 705
N +G +P + K S E G+ + + N L
Sbjct: 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607
Query: 706 S-------------GTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNK 752
S G S TF N + LD++ N L G +PK + + L +L+LG+N
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667
Query: 753 IRDTFPWWLENIXXXXXXXXXXNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCI 812
I + P E GD L I+DL+SN GR+PQ
Sbjct: 668 ISGSIP-------------------------DEVGD-LRGLNILDLSSNKLDGRIPQA-- 699
Query: 813 TSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFS 872
+ L++ T ID S
Sbjct: 700 -----------------------------------------------MSALTMLTEIDLS 712
Query: 873 RNNFDGPIPEEIGRLKSL 890
NN GPIP E+G+ ++
Sbjct: 713 NNNLSGPIP-EMGQFETF 729
Score = 123 bits (308), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 164/530 (30%), Positives = 237/530 (44%), Gaps = 91/530 (17%)
Query: 68 SGVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPXXXXXXX 127
SG C + + LDLS S+S + + L S L+ LN++ N +
Sbjct: 94 SGFKC--SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD------------ 139
Query: 128 XXXXXXXXXAGFAGQIPIQVSG---MTRLVTLDLSSLNRFGAPLKLENPNLSG--LLQNL 182
P +VSG + L LDLS+ + GA N+ G L
Sbjct: 140 ---------------FPGKVSGGLKLNSLEVLDLSANSISGA-------NVVGWVLSDGC 177
Query: 183 AELRELYLDGANISAP-GIEWCQAL----------SSLVP------KLQVLSLSSCYLSG 225
EL+ L + G IS + C L S+ +P LQ L +S LSG
Sbjct: 178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG 237
Query: 226 PIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKIL-QVHT 284
+++ L ++ + N + P+P +L L L+ ++ G P+ + T
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDT 295
Query: 285 LETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLP-DSIGNLKNLSRLDLALCYF 343
L LDLSGN P F S L +L LS+ NFSG LP D++ ++ L LDL+ F
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355
Query: 344 DGSIPTSLANLT-QLVYLDLSFNKFVGPI-PSL--HMSKNLTHLDLSYNALPGAISSTDW 399
G +P SL NL+ L+ LDLS N F GPI P+L + L L L N G I T
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT-L 414
Query: 400 EHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDL 459
+ S LV + L +N L+G+IP SL SL L+ L+L N G IP+ L+T+ L
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ-ELMYVKTLETLIL 473
Query: 460 SGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGS 519
N L G IP + + NL + LS+N+L G + I RL NLA L+LS N+ + N
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP-KWIGRLENLAILKLSNNSFSGN--- 529
Query: 520 DSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWE 569
P++ L C+ L LDL+ N +G IP +++
Sbjct: 530 ---IPAE-----LGDCR-----------SLIWLDLNTNLFNGTIPAAMFK 560
Score = 107 bits (266), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 184/381 (48%), Gaps = 42/381 (11%)
Query: 139 FAGQIPIQVSGMT-RLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISA 197
F+G++P ++ ++ L+TLDLSS N F P+ PNL +N L+ELYL +
Sbjct: 355 FSGELPESLTNLSASLLTLDLSS-NNFSGPIL---PNLCQNPKN--TLQELYLQNNGFTG 408
Query: 198 ---PGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEF 254
P + C L SL LS YLSG I SL L L ++L N L +P+
Sbjct: 409 KIPPTLSNCSELVSL-------HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461
Query: 255 LADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDF-PKNSSLRTLM 313
L L +L L + L G P + L + LS N L G +P + + +L L
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL-TGEIPKWIGRLENLAILK 520
Query: 314 LSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLD-LSFNKFV---- 368
LSN +FSG +P +G+ ++L LDL F+G+IP ++ + + + ++ ++V
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580
Query: 369 -GPIPSLHMSKNLTHLD---------LS-------YNALPGAISSTDWEHLSNLVYVDLR 411
G H + NL LS + + G +S +++ +++++D+
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640
Query: 412 YNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMS 471
YN L+G IP + S+P L L L N G IP+ L+ +DLS N+L+G IP +
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-EVGDLRGLNILDLSSNKLDGRIPQA 699
Query: 472 IFDLRNLKILILSSNKLNGTV 492
+ L L + LS+N L+G +
Sbjct: 700 MSALTMLTEIDLSNNNLSGPI 720
Score = 103 bits (257), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 132/445 (29%), Positives = 193/445 (43%), Gaps = 72/445 (16%)
Query: 139 FAGQIPIQ-VSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISA 197
F+G++P+ + M L LDLS N F L NLS A L L L N S
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLS-FNEFSGELPESLTNLS------ASLLTLDLSSNNFSG 382
Query: 198 PGI-EWCQALSSLVPK--LQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEF 254
P + CQ PK LQ L L + +G I P+L+ L + L N L +P
Sbjct: 383 PILPNLCQN-----PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437
Query: 255 LADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKN-SSLRTLM 313
L L L+L + L G P++++ V TLETL L N L G +P N ++L +
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL-TGEIPSGLSNCTNLNWIS 496
Query: 314 LSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPS 373
LSN +G +P IG L+NL+ L L+ F G+IP L + L++LDL+ N F G IP+
Sbjct: 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556
Query: 374 LHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGS--LFSLPMLQQ 431
++ G I++ ++ YV ++ + + G+ L ++
Sbjct: 557 AMFKQS------------GKIAA---NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601
Query: 432 LQL-----------AENKFGGLI-PEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLK 479
QL +GG P F N S +D+S N L G IP I + L
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF--LDMSYNMLSGYIPKEIGSMPYLF 659
Query: 480 ILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRV 539
IL L N ++G++ + L L L+LS N L D P + L +
Sbjct: 660 ILNLGHNDISGSIP-DEVGDLRGLNILDLSSNKL------DGRIPQAMSALTM------- 705
Query: 540 IPNLKNQSKLFNLDLSDNQISGEIP 564
L +DLS+N +SG IP
Sbjct: 706 ---------LTEIDLSNNNLSGPIP 721
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 213 LQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLN 272
+ L +S LSG I + + L ++ L ND+ +P+ + D L L LS ++L+
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 273 GTFPEKILQVHTLETLDLSGNSLLQGSLPDF 303
G P+ + + L +DLS N+ L G +P+
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNN-LSGPIPEM 723
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%)
Query: 210 VPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHS 269
+P L +L+L +SG I + L+ L+++ L N L +P+ ++ LT + LS++
Sbjct: 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714
Query: 270 RLNGTFPE 277
L+G PE
Sbjct: 715 NLSGPIPE 722
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 115/229 (50%), Gaps = 12/229 (5%)
Query: 226 PIHPSLAKLQSLSVIRLDQ-NDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHT 284
PI SLA L L+ + + N+L+ P+P +A L L ++H+ ++G P+ + Q+ T
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 285 LETLDLSGNSLLQGSLPDFPKNSSLRTLM---LSNTNFSGVLPDSIGNLKNL-SRLDLAL 340
L TLD S N+L G+LP P SSL L+ SG +PDS G+ L + + ++
Sbjct: 127 LVTLDFSYNAL-SGTLP--PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 341 CYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMS-KNLTHLDLSYNALPGAISSTDW 399
G IP + ANL L ++DLS N G L S KN + L+ N+L +
Sbjct: 184 NRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242
Query: 400 EHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSN 448
NL +DLR N + G++P L L L L ++ N G IP+ N
Sbjct: 243 SK--NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 133/268 (49%), Gaps = 18/268 (6%)
Query: 307 SSLRTLMLSNTNFSGVLPDS------IGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYL 360
S L T N + GVL D+ + NL +LS L+L Y IP+SLANL L +L
Sbjct: 26 SWLPTTDCCNRTWLGVLCDTDTQTYRVNNL-DLSGLNLPKPY---PIPSSLANLPYLNFL 81
Query: 361 DLS-FNKFVGPIP-SLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGS 418
+ N VGPIP ++ L +L +++ + GAI + LV +D YN+L+G+
Sbjct: 82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGT 140
Query: 419 IPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNL 478
+P S+ SLP L + N+ G IP+ + S ++ +S NRL G IP + +L NL
Sbjct: 141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NL 199
Query: 479 KILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLR 538
+ LS N L G + N K+ L+ N+L + G + L L + ++
Sbjct: 200 AFVDLSRNMLEGDASV-LFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIY 257
Query: 539 -VIPNLKNQSK-LFNLDLSDNQISGEIP 564
+P Q K L +L++S N + GEIP
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 134/341 (39%), Gaps = 71/341 (20%)
Query: 55 MVQWSQSNDCC--TWSGVDCD---EAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNL 109
+ W + DCC TW GV CD + RV LDLS G++ P
Sbjct: 24 LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLS------GLNLPKPY----------- 66
Query: 110 AFNMFNATEIPXXXXXXXXXXXXXXXXAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLK 169
IP ++ + L L + +N P+
Sbjct: 67 --------------------------------PIPSSLANLPYLNFLYIGGINNLVGPIP 94
Query: 170 LENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHP 229
+ L +L LY+ N+S ++ + +LV L S LSG + P
Sbjct: 95 PA-------IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV----TLDFSYNALSGTLPP 143
Query: 230 SLAKLQSLSVIRLDQNDLLSPVPEFLADFFNL-TSLRLSHSRLNGTFPEKILQVHTLETL 288
S++ L +L I D N + +P+ F L TS+ +S +RL G P ++ L +
Sbjct: 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV 202
Query: 289 DLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIP 348
DLS N L + F + + + + L+ + + L +G KNL+ LDL G++P
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLP 261
Query: 349 TSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNA 389
L L L L++SFN G IP NL D+S A
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIP---QGGNLQRFDVSAYA 299
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 127/323 (39%), Gaps = 80/323 (24%)
Query: 660 IPETLCRAKYLLVLDLSK-NKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCG 718
IP +L YL L + N L G +P + K+++ L L + ++SG +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ-LHYLYITHTNVSGAIPDFLSQIKT 126
Query: 719 LHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENIXXXXXXXXXXNSFY 778
L TLD + N L GT+P S+++ NLV + N+I P Y
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP-----------------DSY 169
Query: 779 GNISCRENGDSWPKL-QIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFL 837
G S+ KL + ++ N G++P F +++ F+
Sbjct: 170 G---------SFSKLFTSMTISRNRLTGKIPPT------------------FANLNLAFV 202
Query: 838 KIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQ 897
++ + +V G + KI S+ F ++G K+L+GL+L
Sbjct: 203 DLSRNMLEGDASVLF-GSDKNTQKIHLAKNSLAFDLG--------KVGLSKNLNGLDLRN 253
Query: 898 NALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQXXXXXXXXXXXXXXXXXVGKIPISTQ 957
N + G +P + L+ L SL++S N+L G+IP
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ------------------------GGN 289
Query: 958 LQSFLATSFEGNKGLCGPPLNVC 980
LQ F +++ NK LCG PL C
Sbjct: 290 LQRFDVSAYANNKCLCGSPLPAC 312
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 656 ITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPG 715
++G IP+ L + K L+ LD S N LSG +P + + ++G+ GN +SG + ++
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI-TFDGNRISGAIPDSYGS 171
Query: 716 NCGLHT-LDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIR 754
L T + ++ N+L G +P + AN NL +DL N +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLE 210
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 74/177 (41%), Gaps = 18/177 (10%)
Query: 591 PFSISDLSPITVLDLHSNQLQGNIPYPP-----PKAVLVDYSNNSFTSSIPDDIGXXXXX 645
P +S + + LD N L G +P P P V + + N + +IPD G
Sbjct: 118 PDFLSQIKTLVTLDFSYNALSGTLP--PSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175
Query: 646 XXXXXXXXXXITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSL 705
+TG IP T L +DLS+N L G + L + ++L NSL
Sbjct: 176 FTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSL 233
Query: 706 SGTLSVTFPGNCGL----HTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFP 758
+ L G GL + LDL N++ GT+P+ L + L L++ N + P
Sbjct: 234 AFDL-----GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 106/254 (41%), Gaps = 28/254 (11%)
Query: 447 SNASSSALDTIDLSGNRLEGP--IPMSIFDLRNLKILILSS-NKLNGTVQLAAIQRLHNL 503
++ + ++ +DLSG L P IP S+ +L L L + N L G + AI +L L
Sbjct: 45 TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP-PAIAKLTQL 103
Query: 504 AKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVI-----PNLKNQSKLFNLDLSDNQ 558
L +++ N+ +G+ F SQ++TL + P++ + L + N+
Sbjct: 104 HYLYITHTNV---SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
Query: 559 ISGEIPNWVWEIGNVXXXXXXXXXXXXXXXXRPFSISDLSPITVLDLHSNQLQGNIPYPP 618
ISG IP+ + F+ +L+ +DL N L+G+
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA---FVDLSRNMLEGD----- 212
Query: 619 PKAVLVDYSNNS-----FTSSIPDDIGXX--XXXXXXXXXXXXXITGVIPETLCRAKYLL 671
+VL N+ +S+ D+G I G +P+ L + K+L
Sbjct: 213 -ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271
Query: 672 VLDLSKNKLSGKMP 685
L++S N L G++P
Sbjct: 272 SLNVSFNNLCGEIP 285
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 110/433 (25%), Positives = 180/433 (41%), Gaps = 60/433 (13%)
Query: 140 AGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRE-----LYLDGAN 194
+ ++P S +T LV +DLS N + + +L LRE L LD
Sbjct: 137 SCKLPAYFSNLTNLVHVDLSY-----------NYIQTITVNDLQFLRENPQVNLSLD--- 182
Query: 195 ISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPS-LAKLQSLSVIRL------DQNDL 247
+S I++ Q + KL L+L + S I + L L L V RL D+ +L
Sbjct: 183 MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 242
Query: 248 LSPVPEFLADFFNLT--SLRLSHSRLNGTFPEKILQVHTL---ETLDLSGNSLLQGSLPD 302
P + ++T RL+++ F + I++ H L + L+G S+ L D
Sbjct: 243 EIFEPSIMEGLCDVTIDEFRLTYT---NDFSDDIVKFHCLANVSAMSLAGVSI--KYLED 297
Query: 303 FPKNSSLRTLM-------------------LSNTNFSGVLPDSIGNLKNLSRLDLA--LC 341
PK+ ++L L+ T G + L +LS LDL+
Sbjct: 298 VPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNAL 357
Query: 342 YFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEH 401
F G S L +LDLSFN + + + L HLD ++ L + +
Sbjct: 358 SFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS 417
Query: 402 LSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSG 461
L L+Y+D+ Y + G L L L++A N F A+++ L +DLS
Sbjct: 418 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 477
Query: 462 NRLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSD 520
+LE I +FD L L++L +S N L + + +L++L+ L+ S+N + + G
Sbjct: 478 CQLE-QISWGVFDTLHRLQLLNMSHNNL-LFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 535
Query: 521 SSFPSQVRTLRLA 533
FP + L
Sbjct: 536 QHFPKSLAFFNLT 548
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 110/433 (25%), Positives = 180/433 (41%), Gaps = 60/433 (13%)
Query: 140 AGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRE-----LYLDGAN 194
+ ++P S +T LV +DLS N + + +L LRE L LD
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSY-----------NYIQTITVNDLQFLRENPQVNLSLD--- 187
Query: 195 ISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPS-LAKLQSLSVIRL------DQNDL 247
+S I++ Q + KL L+L + S I + L L L V RL D+ +L
Sbjct: 188 MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247
Query: 248 LSPVPEFLADFFNLT--SLRLSHSRLNGTFPEKILQVHTL---ETLDLSGNSLLQGSLPD 302
P + ++T RL+++ F + I++ H L + L+G S+ L D
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYT---NDFSDDIVKFHCLANVSAMSLAGVSI--KYLED 302
Query: 303 FPKNSSLRTLM-------------------LSNTNFSGVLPDSIGNLKNLSRLDLA--LC 341
PK+ ++L L+ T G + L +LS LDL+
Sbjct: 303 VPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNAL 362
Query: 342 YFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEH 401
F G S L +LDLSFN + + + L HLD ++ L + +
Sbjct: 363 SFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS 422
Query: 402 LSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSG 461
L L+Y+D+ Y + G L L L++A N F A+++ L +DLS
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482
Query: 462 NRLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSD 520
+LE I +FD L L++L +S N L + + +L++L+ L+ S+N + + G
Sbjct: 483 CQLE-QISWGVFDTLHRLQLLNMSHNNL-LFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540
Query: 521 SSFPSQVRTLRLA 533
FP + L
Sbjct: 541 QHFPKSLAFFNLT 553
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 134/292 (45%), Gaps = 7/292 (2%)
Query: 211 PKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDL-LSPVPEFLADFFNLTSLRLSHS 269
P L+ L L+ +S + L +L + L N L L P+ F NLT L +S +
Sbjct: 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF-TGLSNLTKLDISEN 114
Query: 270 RLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGN 329
++ ++ L++L++ N L+ S F +SL L L N + + +++ +
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174
Query: 330 LKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPI-PSLHMSKNLTHLDLSYN 388
L L L L + S L +L L++S ++ + P+ NLT L +++
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234
Query: 389 ALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGS-LFSLPMLQQLQLAENKFGGLIPEFS 447
L A+ HL L +++L YN ++ +I GS L L LQ++QL + + P ++
Sbjct: 235 NL-TAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEP-YA 291
Query: 448 NASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQR 499
+ L +++SGN+L + NL+ LIL SN L +L + R
Sbjct: 292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFR 343
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
Query: 408 VDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIP-EFSNASSSALDTIDLSGNRLEG 466
+DL N + S P L++L+L EN + P F+N + L T+ L NRL+
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN--LRTLGLRSNRLK- 93
Query: 467 PIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPS 525
IP+ +F L NL L +S NK+ + Q L+NL LE+ N+L + S +
Sbjct: 94 LIPLGVFTGLSNLTKLDISENKIVILLDYM-FQDLYNLKSLEVGDNDLVYISHRAFSGLN 152
Query: 526 QVRTLRLASCKLRVIP 541
+ L L C L IP
Sbjct: 153 SLEQLTLEKCNLTSIP 168
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 3/170 (1%)
Query: 343 FDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHL 402
F G S T L YLDLSFN + + + L HLD ++ L + + L
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420
Query: 403 SNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFG-GLIPEFSNASSSALDTIDLSG 461
NL+Y+D+ + + G L L+ L++A N F +P+ + L +DLS
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN-LTFLDLSQ 479
Query: 462 NRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYN 511
+LE P + L +L++L ++SN+L +V RL +L K+ L N
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTN 528
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 285 LETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFD 344
L TL L+GN + +L F SSL+ L+ TN + + IG+LK L L++A
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137
Query: 345 G-SIPTSLANLTQLVYLDLSFNK 366
+P +NLT L +LDLS NK
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNK 160
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 23/107 (21%)
Query: 260 NLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNF 319
NL L +SH+ F + +LE L ++GNS F +N
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS--------FQEN------------- 460
Query: 320 SGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNK 366
LPD L+NL+ LDL+ C + PT+ +L+ L L+++ N+
Sbjct: 461 --FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 93/373 (24%), Positives = 136/373 (36%), Gaps = 86/373 (23%)
Query: 211 PKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDL----------LSPVPEFLADFFN 260
P+LQVL LS C + + L LS + L N + LS + + +A N
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111
Query: 261 LTSLR--------------LSHSRLNG-TFPEKILQVHTLETLDLSGNSLLQGSLPDFP- 304
L SL ++H+ + PE + LE LDLS N + D
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171
Query: 305 --------------------------KNSSLRTLMLSNTNFSG--VLPDSIGNLKNLS-- 334
K L L L N NF V+ I L L
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN-NFDSLNVMKTCIQGLAGLEVH 230
Query: 335 RLDLA-------LCYFDGSIPTSLANLT----QLVYLDLSFNKFVGPIPSLHMSKNLTHL 383
RL L L FD S L NLT +L YLD + + L + + +
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290
Query: 384 DLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLI 443
++ + + W+HL V+ ++ G P L L++L NK G
Sbjct: 291 SVTIERVKDFSYNFGWQHLE---LVNCKF----GQFPT--LKLKSLKRLTFTSNKGGN-- 339
Query: 444 PEFSNASSSALDTIDLSGNRL--EGPIPMSIFDLRNLKILILSSNKLNGTVQLAA-IQRL 500
FS +L+ +DLS N L +G S F +LK L LS NG + +++ L
Sbjct: 340 -AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGL 395
Query: 501 HNLAKLELSYNNL 513
L L+ ++NL
Sbjct: 396 EQLEHLDFQHSNL 408
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 6/194 (3%)
Query: 343 FDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHL 402
F G S T L YLDLSFN + + + L HLD ++ L + + L
Sbjct: 66 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125
Query: 403 SNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFG-GLIPE-FSNASSSALDTIDLS 460
NL+Y+D+ + + G L L+ L++A N F +P+ F+ + L +DLS
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN--LTFLDLS 183
Query: 461 GNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSD 520
+LE P + L +L++L +S N ++ + L++L L+ S N++ + +
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242
Query: 521 -SSFPSQVRTLRLA 533
FPS + L L
Sbjct: 243 LQHFPSSLAFLNLT 256
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 117/284 (41%), Gaps = 48/284 (16%)
Query: 142 QIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLS----GLLQNLAELRELYLDGANISA 197
+I G+T + T SS R L+LE+ L G+ L +L +L L +S
Sbjct: 11 EIRCNSKGLTSVPTGIPSSATR----LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66
Query: 198 PGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLD-QNDLLSPVPEF-- 254
G C L+ L LS +G I S L + LD Q+ L + EF
Sbjct: 67 KGC--CSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121
Query: 255 LADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLML 314
NL L +SH+ F + +LE L ++GNS F +N
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS--------FQEN-------- 165
Query: 315 SNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVG----P 370
LPD L+NL+ LDL+ C + PT+ +L+ L L++S N F P
Sbjct: 166 -------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218
Query: 371 IPSLHMSKNLTHLDLSYNALPGAISSTDWEHL-SNLVYVDLRYN 413
L+ +L LD S N + + + +H S+L +++L N
Sbjct: 219 YKCLN---SLQVLDYSLNHIMTS-KKQELQHFPSSLAFLNLTQN 258
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 4/193 (2%)
Query: 343 FDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHL 402
F G S T L YLDLSFN + + + L HLD ++ L + + L
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420
Query: 403 SNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFG-GLIPEFSNASSSALDTIDLSG 461
NL+Y+D+ + + G L L+ L++A N F +P+ + L +DLS
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN-LTFLDLSQ 479
Query: 462 NRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSD- 520
+LE P + L +L++L +S N ++ + L++L L+ S N++ + +
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538
Query: 521 SSFPSQVRTLRLA 533
FPS + L L
Sbjct: 539 QHFPSSLAFLNLT 551
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 285 LETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFD 344
L TL L+GN + +L F SSL+ L+ TN + + IG+LK L L++A
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137
Query: 345 G-SIPTSLANLTQLVYLDLSFNK 366
+P +NLT L +LDLS NK
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNK 160
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 32/159 (20%)
Query: 260 NLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNF 319
NL L +SH+ F + +LE L ++GNS F +N
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS--------FQEN------------- 460
Query: 320 SGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVG----PIPSLH 375
LPD L+NL+ LDL+ C + PT+ +L+ L L++S N F P L+
Sbjct: 461 --FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518
Query: 376 MSKNLTHLDLSYNALPGAISSTDWEHL-SNLVYVDLRYN 413
+L LD S N + + + +H S+L +++L N
Sbjct: 519 ---SLQVLDYSLNHIMTS-KKQELQHFPSSLAFLNLTQN 553
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 93/373 (24%), Positives = 136/373 (36%), Gaps = 86/373 (23%)
Query: 211 PKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDL----------LSPVPEFLADFFN 260
P+LQVL LS C + + L LS + L N + LS + + +A N
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111
Query: 261 LTSLR--------------LSHSRLNG-TFPEKILQVHTLETLDLSGNSLLQGSLPDFP- 304
L SL ++H+ + PE + LE LDLS N + D
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171
Query: 305 --------------------------KNSSLRTLMLSNTNFSG--VLPDSIGNLKNLS-- 334
K L L L N NF V+ I L L
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN-NFDSLNVMKTCIQGLAGLEVH 230
Query: 335 RLDLA-------LCYFDGSIPTSLANLT----QLVYLDLSFNKFVGPIPSLHMSKNLTHL 383
RL L L FD S L NLT +L YLD + + L + + +
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290
Query: 384 DLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLI 443
++ + + W+HL V+ ++ G P L L++L NK G
Sbjct: 291 SVTIERVKDFSYNFGWQHLE---LVNCKF----GQFPT--LKLKSLKRLTFTSNKGGN-- 339
Query: 444 PEFSNASSSALDTIDLSGNRL--EGPIPMSIFDLRNLKILILSSNKLNGTVQLAA-IQRL 500
FS +L+ +DLS N L +G S F +LK L LS NG + +++ L
Sbjct: 340 -AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGL 395
Query: 501 HNLAKLELSYNNL 513
L L+ ++NL
Sbjct: 396 EQLEHLDFQHSNL 408
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 4/193 (2%)
Query: 343 FDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHL 402
F G S L YLDLSFN + + + L HLD ++ L + + L
Sbjct: 385 FKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 444
Query: 403 SNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFG-GLIPEFSNASSSALDTIDLSG 461
NL+Y+D+ + + G L L+ L++A N F +P+ + L +DLS
Sbjct: 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN-LTFLDLSQ 503
Query: 462 NRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSD- 520
+LE P + L +L++L +S N ++ + L++L L+ S N++ + +
Sbjct: 504 CQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562
Query: 521 SSFPSQVRTLRLA 533
FPS + L L
Sbjct: 563 QHFPSSLAFLNLT 575
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 285 LETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFD 344
L TL L+GN + +L F SSL+ L+ TN + + IG+LK L L++A
Sbjct: 102 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 161
Query: 345 G-SIPTSLANLTQLVYLDLSFNK 366
+P +NLT L +LDLS NK
Sbjct: 162 SFKLPEYFSNLTNLEHLDLSSNK 184
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 23/108 (21%)
Query: 260 NLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNF 319
NL L +SH+ F + +LE L ++GNS F +N
Sbjct: 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS--------FQEN------------- 484
Query: 320 SGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKF 367
LPD L+NL+ LDL+ C + PT+ +L+ L L++S N F
Sbjct: 485 --FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 17/155 (10%)
Query: 212 KLQVLSLSSC----YLSGPI--------HPSLAKLQSLSVIRLDQNDLLSPVPEFLADFF 259
+L+ LS+ +C L P+ H L LQSL RL+ + S +P +A+
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL---RLEWTGIRS-LPASIANLQ 206
Query: 260 NLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNF 319
NL SL++ +S L+ P I + LE LDL G + L+ P F + L+ L+L + +
Sbjct: 207 NLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265
Query: 320 SGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANL 354
LP I L L +LDL C +P+ +A L
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 19/150 (12%)
Query: 250 PVPEFLADFFNLTSLRLSHSRLNGT----FPEKILQVHTLETLDLSGNSL--LQGSLPDF 303
P+P+F F L+ L+ H ++ P+ Q LETL L+ N L L S+
Sbjct: 92 PLPQFPDQAFRLSHLQ--HXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASL 149
Query: 304 PKNSSLRTLMLSNTNFSGVLP------DSIGNLKNLSRLDLALCYFDG--SIPTSLANLT 355
+ LR L + LP D+ G + L L + G S+P S+ANL
Sbjct: 150 ---NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQ 206
Query: 356 QLVYLDLSFNKFVGPIPSLHMSKNLTHLDL 385
L L + + P++H L LDL
Sbjct: 207 NLKSLKIRNSPLSALGPAIHHLPKLEELDL 236
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Query: 381 THLDLSYNALPGAISSTD-WEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKF 439
T L L+ N L G ISS + L +LV ++L+ N L G P + +Q+LQL ENK
Sbjct: 32 TELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK- 89
Query: 440 GGLIPEFSNA---SSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLA 495
I E SN L T++L N++ +P S L +L L L+SN N LA
Sbjct: 90 ---IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 456 TIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTV 515
T+D +G L+ IP I L ++L L+ N+L RL +L KLEL N LT
Sbjct: 12 TVDCTGRGLK-EIPRDI-PLHTTELL-LNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68
Query: 516 NAGSDSSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIP 564
+ S ++ L+L K++ I N +L L+L DNQIS +P
Sbjct: 69 IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 226 PIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTL 285
P+H + L + R+ + L +P +L L L ++L G P +
Sbjct: 28 PLHTTELLLNDNELGRISSDGLFGRLP-------HLVKLELKRNQLTGIEPNAFEGASHI 80
Query: 286 ETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLA 339
+ L L N + + S F L+TL L + S V+P S +L +L+ L+LA
Sbjct: 81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 95/423 (22%), Positives = 180/423 (42%), Gaps = 59/423 (13%)
Query: 356 QLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSL 415
+L YLDLS NK V S H + NL HLDLS+NA ++ ++S L ++ L L
Sbjct: 70 ELEYLDLSHNKLVKI--SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127
Query: 416 NGSIPGSLFSLPMLQQLQLAENKFGGLI-PE-FSNASSSALDTIDLSGNRLEGPIPMSIF 473
S + L + + L + +G PE + ++ +L + + + +S+
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187
Query: 474 DLRNLKI----LILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRT 529
+ NL++ +L NK + L+ + +L KL +NLT+N ++++ S +R
Sbjct: 188 TVANLELSNIKCVLEDNK--CSYFLSILAKLQTNPKL----SNLTLN-NIETTWNSFIRI 240
Query: 530 LRLA---SCKLRVIPNLKNQSKLFNLD----------LSDNQISGEI----PNWVWEIGN 572
L+L + I N+K Q +L D LS +Q+ ++ ++++EI +
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300
Query: 573 VXXXXXXXXXXXXXXXXRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFT 632
+ F++S + +L P + +D+SNN T
Sbjct: 301 -------------NMNIKNFTVSGTRMVHML----------CPSKISPFLHLDFSNNLLT 337
Query: 633 SSIPDDIGXXXXXXXXXXXXXXXIT-GVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKM 691
++ ++ G I E + K L LD+S+N +S
Sbjct: 338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397
Query: 692 SEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNN 751
++ L LN+ N L+ T+ P + LDL+ N++ ++PK + L L++ +N
Sbjct: 398 TKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLHSNKI-KSIPKQVVKLEALQELNVASN 454
Query: 752 KIR 754
+++
Sbjct: 455 QLK 457
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 106/409 (25%), Positives = 171/409 (41%), Gaps = 74/409 (18%)
Query: 227 IHPSLAKLQSLSVIRLDQNDL-------LSPVPEFLADFFNLTSLRLSHSRLNGTFPEKI 279
+HPS KL SL I N + L P+ FF+L + L +SR++ + + +
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL-YSRVSVDWGKCM 198
Query: 280 --LQVHTLETLDLSGNSL---LQGSLPDFPKNSSLRTLMLSNT------NFSGVLPDSIG 328
+ LE LD+SGN + G+ + S +L+L++ F +
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258
Query: 329 NLKNLSR-----LDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIP--SLHMSKNLT 381
L+R LDL+ + L L L+L++NK + I + + NL
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQ 317
Query: 382 HLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGG 441
L+LSYN L G + S+++ L + Y+DL+ N + + L LQ L L +N
Sbjct: 318 VLNLSYNLL-GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376
Query: 442 L--IPEFSNA--SSSALDT----------IDLSGNRLEGPIPMSIFDLR--NLKILILSS 485
+ IP + S + L T I LS NRLE + + F LR +L+ILIL+
Sbjct: 377 IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLEN-LDILYFLLRVPHLQILILNQ 435
Query: 486 NKLNGT---------------------VQLA--------AIQRLHNLAKLELSYNNLTVN 516
N+ + +QLA + L +L L L++N L
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495
Query: 517 AGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPN 565
S + +R L L S +L V+ + + L LD+S NQ+ P+
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPD 544
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 27/185 (14%)
Query: 399 WEHLSNLVYVDLRYNSLNGS-IPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTI 457
W +L +L V+L YN N + +P L+ LP LQ L +A N+ G+ +A+ D
Sbjct: 487 WSNLKDLTDVEL-YNCPNXTQLPDFLYDLPELQSLNIACNR--GI-----SAAQLKADWT 538
Query: 458 DLSGNRLEGP-IPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHN-------------L 503
L+ + GP I + NL+ S++ L V+L + +HN L
Sbjct: 539 RLADDEDTGPKIQIFYXGYNNLEEFPASAS-LQKXVKLGLLDCVHNKVRHLEAFGTNVKL 597
Query: 504 AKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLF---NLDLSDNQIS 560
L+L YN + +F QV L + KL+ IPN+ N ++ ++D S N+I
Sbjct: 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVXGSVDFSYNKIG 657
Query: 561 GEIPN 565
E N
Sbjct: 658 SEGRN 662
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 9/166 (5%)
Query: 403 SNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGL-IPEFSNASSSALDTIDLSG 461
+N ++L N + S L L+ LQL+ N + I F+ ++ L+T++L
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN--LNTLELFD 121
Query: 462 NRLEGPIPMSIF-DLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSD 520
NRL IP F L LK L L +N + ++ A R+ +L +L+L ++ S+
Sbjct: 122 NRLTT-IPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELK-RLSYISE 178
Query: 521 SSFP--SQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIP 564
+F S +R L LA C LR IPNL KL LDLS N +S P
Sbjct: 179 GAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP 224
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 98/234 (41%), Gaps = 39/234 (16%)
Query: 288 LDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSI 347
L+L N + + F L L LS + + + L NL+ L+L FD +
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL----FDNRL 124
Query: 348 PT----SLANLTQLVYLDLSFNKFVGPIPSLHMSK--NLTHLDLSYNALPGAISSTDWEH 401
T + L++L L L N + IPS ++ +L LDL IS +E
Sbjct: 125 TTIPNGAFVYLSKLKELWLR-NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183
Query: 402 LSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSG 461
LSNL Y++L +L +P L L LD +DLSG
Sbjct: 184 LSNLRYLNLAMCNLR--------EIPNLTPL-------------------IKLDELDLSG 216
Query: 462 NRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTV 515
N L P S L +L+ L + +++ ++ A L +L ++ L++NNLT+
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTL 269
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 108/432 (25%), Positives = 170/432 (39%), Gaps = 79/432 (18%)
Query: 145 IQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIE-WC 203
++ G + L LDLSS PLK +P G Q + +L L L+ A ++ E C
Sbjct: 165 LEFLGNSSLRKLDLSS-----NPLKEFSP---GCFQTIGKLFALLLNNAQLNPHLTEKLC 216
Query: 204 QALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLD--QNDLLSPVPEFLADFFNL 261
LS+ +Q LSL++ L + + L+ ++ +LD N+L + +L
Sbjct: 217 WELSN--TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSL 274
Query: 262 TSLRLSHSRLNGTFPEKILQVHTLETLDL----SGNSLLQGSLPD-----FPKNSSLRTL 312
L L ++ + P + L L L + S+ S P+ F L L
Sbjct: 275 RYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYL 334
Query: 313 MLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIP 372
+ + N ++ L +L L L+ + TSL LT ++ L+ P+
Sbjct: 335 NMDDNNIPSTKSNTFTGLVSLKYLSLSKTF------TSLQTLTNETFVSLAH----SPLL 384
Query: 373 SLHMSKN---------------LTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNG 417
+L+++KN L LDL N + +S +W L N+ + L YN
Sbjct: 385 TLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQ 444
Query: 418 SIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRN 477
S +P LQ+L L AL +D+S P LRN
Sbjct: 445 LSTSSFALVPSLQRLMLRR---------------VALKNVDIS--------PSPFRPLRN 481
Query: 478 LKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT-----VNAGSDSSF---PSQVRT 529
L IL LS+N + + ++ L NL L+ +NNL N G +F S +
Sbjct: 482 LTILDLSNNNI-ANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHI 540
Query: 530 LRLASCKLRVIP 541
L L S L IP
Sbjct: 541 LNLESNGLDEIP 552
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 661 PETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLH 720
P R L +LD N +S K+ L ++ +L VLNL+ N LS TF L
Sbjct: 42 PTNFTRYSQLAILDAGFNSIS-KLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLT 100
Query: 721 TLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDT 756
LDL N + N +NL+ LDL +N + T
Sbjct: 101 ELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSST 136
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 15/173 (8%)
Query: 399 WEHLSNLVYVDLRYNSLN-GSIPGSLFSLPMLQQLQLAENK--FGGLIPEFSNASSSA-- 453
W++L +L V++ YN N +P L +LP Q + +A N+ G + + A + A
Sbjct: 245 WDNLKDLTDVEV-YNCPNLTKLPTFLKALPEXQLINVACNRGISGEQLKDDWQALADAPV 303
Query: 454 ---LDTIDLSGNRLEG-PIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELS 509
+ I + N L+ P+ S+ + L L N+L G +L A LA L L+
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEG--KLPAFGSEIKLASLNLA 361
Query: 510 YNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNL---KNQSKLFNLDLSDNQI 559
YN +T + F QV L A KL+ IPN+ K+ S +D S N+I
Sbjct: 362 YNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNEI 414
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 5/120 (4%)
Query: 356 QLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSL 415
Q++Y+ + K SL K L L+ YN L G + + E L ++L YN +
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSE--IKLASLNLAYNQI 365
Query: 416 NGSIPGSLFSL-PMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD 474
IP + ++ L A NK + F S S ID S N + G + FD
Sbjct: 366 T-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNEI-GSVDGKNFD 423
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 115/267 (43%), Gaps = 61/267 (22%)
Query: 284 TLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLP------------------- 324
TLE LD+S N + S+ K ++L +L+ +N S + P
Sbjct: 173 TLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 230
Query: 325 -DSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKF--VGPIPSLHMSKNLT 381
++ +L NL+ LDLA P L+ LT+L L L N+ + P+ L LT
Sbjct: 231 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTA---LT 285
Query: 382 HLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGG 441
+L+L+ N L + +L NL Y+ L +N+++ P S SL LQ+L + NK
Sbjct: 286 NLELNENQLEDI---SPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFSNNKVS- 339
Query: 442 LIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLH 501
D+S S+ +L N+ L N+++ LA + R+
Sbjct: 340 ----------------DVS----------SLANLTNINWLSAGHNQISDLTPLANLTRIT 373
Query: 502 NLAKLELSYNNLTVNAGSDSSFPSQVR 528
L + ++ N VN ++ S P+ V+
Sbjct: 374 QLGLNDQAWTNAPVNYKANVSIPNTVK 400
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 115/242 (47%), Gaps = 45/242 (18%)
Query: 325 DSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLD 384
D + L NL++++ + P L NLT+LV + ++ N+ P +++ NLT L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT-NLTGLT 113
Query: 385 LSYNALPGAISSTD-WEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLI 443
L N I+ D ++L+NL ++L N++ S +L L LQQL N+ L
Sbjct: 114 LFNNQ----ITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNFG-NQVTDLK 166
Query: 444 PEFSNASSSALDTIDLSGNRLEGPIPMSIF-DLRNLKILILSSNKLNGTVQLAAIQRLHN 502
P A+ + L+ +D+S N++ +S+ L NL+ LI ++N+++ L L N
Sbjct: 167 PL---ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGI---LTN 217
Query: 503 LAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGE 562
L +L L+ N +L+ I L + + L +LDL++NQIS
Sbjct: 218 LDELSLNGN------------------------QLKDIGTLASLTNLTDLDLANNQISNL 253
Query: 563 IP 564
P
Sbjct: 254 AP 255
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 717 CGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFP 758
L L LNGNQL +LA+ NL LDL NN+I + P
Sbjct: 216 TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 255
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 285 LETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFD 344
L TL L+GN + +L F SSL+ L+ TN + + IG+LK L L++A
Sbjct: 80 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 139
Query: 345 G-SIPTSLANLTQLVYLDLSFNK 366
+P +NLT L +LDLS NK
Sbjct: 140 SFKLPEYFSNLTNLEHLDLSSNK 162
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 285 LETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFD 344
L TL L+GN + +L F SSL+ L+ TN + + IG+LK L L++A
Sbjct: 79 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 138
Query: 345 G-SIPTSLANLTQLVYLDLSFNK 366
+P +NLT L +LDLS NK
Sbjct: 139 SFKLPEYFSNLTNLEHLDLSSNK 161
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 285 LETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFD 344
L TL L+GN + +L F SSL+ L+ TN + + IG+LK L L++A
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137
Query: 345 G-SIPTSLANLTQLVYLDLSFNK 366
+P +NLT L +LDLS NK
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNK 160
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 285 LETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFD 344
L TL L+GN + +L F SSL+ L+ TN + + IG+LK L L++A
Sbjct: 79 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 138
Query: 345 G-SIPTSLANLTQLVYLDLSFNK 366
+P +NLT L +LDLS NK
Sbjct: 139 SFKLPEYFSNLTNLEHLDLSSNK 161
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 370 PIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLF-SLPM 428
PI NL L L N L ++ ++ L+ L Y+ L YN L S+P +F L
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTS 158
Query: 429 LQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD-LRNLKILILSSN- 486
L++L+L N+ +PE + + L T+ L N+L+ +P FD L LK+L L N
Sbjct: 159 LKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENP 216
Query: 487 ---KLNGTVQLA 495
NG + +A
Sbjct: 217 WDCTCNGIIYMA 228
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 233 KLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKIL-QVHTLETLDLS 291
+L +L+ +RLD+N L S P LT L L ++ L + P+ + ++ +L+ L L
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLY 165
Query: 292 GNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDL 338
N L + F K + L+TL L N V + +L+ L L L
Sbjct: 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 56/136 (41%), Gaps = 2/136 (1%)
Query: 303 FPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDL 362
F + +L TL +++ + L NL+ L L P +LT+L YL L
Sbjct: 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140
Query: 363 SFNKFVG-PIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPG 421
+N+ P +L L L YN + ++ L+ L + L N L G
Sbjct: 141 GYNELQSLPKGVFDKLTSLKELRL-YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199
Query: 422 SLFSLPMLQQLQLAEN 437
+ SL L+ LQL EN
Sbjct: 200 AFDSLEKLKMLQLQEN 215
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 116/242 (47%), Gaps = 44/242 (18%)
Query: 325 DSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLD 384
D + L NL++++ + P L NLT+LV + ++ N+ P +++ NLT L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT-NLTGLT 113
Query: 385 LSYNALPGAISSTD-WEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLI 443
L N I+ D ++L+NL ++L N++ S +L L LQQL + N+ L
Sbjct: 114 LFNNQ----ITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNFSSNQVTDLK 167
Query: 444 PEFSNASSSALDTIDLSGNRLEGPIPMSIF-DLRNLKILILSSNKLNGTVQLAAIQRLHN 502
P A+ + L+ +D+S N++ +S+ L NL+ LI ++N+++ L L N
Sbjct: 168 PL---ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGI---LTN 218
Query: 503 LAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGE 562
L +L L+ N +L+ I L + + L +LDL++NQIS
Sbjct: 219 LDELSLNGN------------------------QLKDIGTLASLTNLTDLDLANNQISNL 254
Query: 563 IP 564
P
Sbjct: 255 AP 256
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 138/315 (43%), Gaps = 54/315 (17%)
Query: 146 QVSGMTRLVTL-DLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQ 204
Q++ +T L L +L+ L F + +P L+NL L L L S+ I
Sbjct: 96 QIADITPLANLTNLTGLTLFNNQITDIDP-----LKNLTNLNRLEL-----SSNTISDIS 145
Query: 205 ALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSL 264
ALS L LQ L+ SS ++ + P LA L +L + + N + S + LA NL SL
Sbjct: 146 ALSGLT-SLQQLNFSSNQVTD-LKP-LANLTTLERLDISSNKV-SDI-SVLAKLTNLESL 200
Query: 265 RLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQ-GSLPDFPKNSSLRTLMLSNTNFSGVL 323
++++++ P IL L+ L L+GN L G+L ++L L L+N S +
Sbjct: 201 IATNNQISDITPLGIL--TNLDELSLNGNQLKDIGTLASL---TNLTDLDLANNQISNLA 255
Query: 324 PDS--------------------IGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLS 363
P S + L L+ L+L + P ++NL L YL L
Sbjct: 256 PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLY 313
Query: 364 FNKF--VGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPG 421
FN + P+ SL + L YN +SS +L+N+ ++ +N ++ P
Sbjct: 314 FNNISDISPVSSLTKLQRL----FFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP- 366
Query: 422 SLFSLPMLQQLQLAE 436
L +L + QL L +
Sbjct: 367 -LANLTRITQLGLND 380
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 717 CGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFP 758
L L LNGNQL +LA+ NL LDL NN+I + P
Sbjct: 217 TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 256
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 116/242 (47%), Gaps = 44/242 (18%)
Query: 325 DSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLD 384
D + L NL++++ + P L NLT+LV + ++ N+ P +++ NLT L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT-NLTGLT 113
Query: 385 LSYNALPGAISSTD-WEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLI 443
L N I+ D ++L+NL ++L N++ S +L L LQQL + N+ L
Sbjct: 114 LFNNQ----ITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFSSNQVTDLK 167
Query: 444 PEFSNASSSALDTIDLSGNRLEGPIPMSIF-DLRNLKILILSSNKLNGTVQLAAIQRLHN 502
P A+ + L+ +D+S N++ +S+ L NL+ LI ++N+++ L L N
Sbjct: 168 PL---ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGI---LTN 218
Query: 503 LAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGE 562
L +L L+ N +L+ I L + + L +LDL++NQIS
Sbjct: 219 LDELSLNGN------------------------QLKDIGTLASLTNLTDLDLANNQISNL 254
Query: 563 IP 564
P
Sbjct: 255 AP 256
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 111/253 (43%), Gaps = 46/253 (18%)
Query: 146 QVSGMTRLVTL-DLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQ 204
Q++ +T L L +L+ L F + +P L+NL L L L S+ I
Sbjct: 96 QIADITPLANLTNLTGLTLFNNQITDIDP-----LKNLTNLNRLEL-----SSNTISDIS 145
Query: 205 ALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSL 264
ALS L LQ LS SS ++ + P LA L +L + + N + S + LA NL SL
Sbjct: 146 ALSGLT-SLQQLSFSSNQVTD-LKP-LANLTTLERLDISSNKV-SDI-SVLAKLTNLESL 200
Query: 265 RLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQ-GSLPDFPKNSSLRTLMLSNTNFSGVL 323
++++++ P IL L+ L L+GN L G+L ++L L L+N S +
Sbjct: 201 IATNNQISDITPLGIL--TNLDELSLNGNQLKDIGTLASL---TNLTDLDLANNQISNLA 255
Query: 324 PDS--------------------IGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLS 363
P S + L L+ L+L + P ++NL L YL L
Sbjct: 256 PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLY 313
Query: 364 FNKF--VGPIPSL 374
FN + P+ SL
Sbjct: 314 FNNISDISPVSSL 326
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 717 CGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFP 758
L L LNGNQL +LA+ NL LDL NN+I + P
Sbjct: 217 TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 256
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 116/242 (47%), Gaps = 44/242 (18%)
Query: 325 DSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLD 384
D + L NL++++ + P L NLT+LV + ++ N+ P +++ NLT L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT-NLTGLT 113
Query: 385 LSYNALPGAISSTD-WEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLI 443
L N I+ D ++L+NL ++L N++ S +L L LQQL + N+ L
Sbjct: 114 LFNNQ----ITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFSSNQVTDLK 167
Query: 444 PEFSNASSSALDTIDLSGNRLEGPIPMSIF-DLRNLKILILSSNKLNGTVQLAAIQRLHN 502
P A+ + L+ +D+S N++ +S+ L NL+ LI ++N+++ L L N
Sbjct: 168 PL---ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGI---LTN 218
Query: 503 LAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGE 562
L +L L+ N +L+ I L + + L +LDL++NQIS
Sbjct: 219 LDELSLNGN------------------------QLKDIGTLASLTNLTDLDLANNQISNL 254
Query: 563 IP 564
P
Sbjct: 255 AP 256
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 138/315 (43%), Gaps = 54/315 (17%)
Query: 146 QVSGMTRLVTL-DLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQ 204
Q++ +T L L +L+ L F + +P L+NL L L L S+ I
Sbjct: 96 QIADITPLANLTNLTGLTLFNNQITDIDP-----LKNLTNLNRLEL-----SSNTISDIS 145
Query: 205 ALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSL 264
ALS L LQ LS SS ++ + P LA L +L + + N + S + LA NL SL
Sbjct: 146 ALSGLT-SLQQLSFSSNQVTD-LKP-LANLTTLERLDISSNKV-SDI-SVLAKLTNLESL 200
Query: 265 RLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQ-GSLPDFPKNSSLRTLMLSNTNFSGVL 323
++++++ P IL L+ L L+GN L G+L ++L L L+N S +
Sbjct: 201 IATNNQISDITPLGIL--TNLDELSLNGNQLKDIGTLASL---TNLTDLDLANNQISNLA 255
Query: 324 PDS--------------------IGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLS 363
P S + L L+ L+L + P ++NL L YL L
Sbjct: 256 PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLY 313
Query: 364 FNKF--VGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPG 421
FN + P+ SL + L YN +SS +L+N+ ++ +N ++ P
Sbjct: 314 FNNISDISPVSSLTKLQRL----FFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP- 366
Query: 422 SLFSLPMLQQLQLAE 436
L +L + QL L +
Sbjct: 367 -LANLTRITQLGLND 380
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 717 CGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFP 758
L L LNGNQL +LA+ NL LDL NN+I + P
Sbjct: 217 TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 256
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 285 LETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFD 344
L TL L+GN + +L F SSL+ L+ TN + + IG+LK L L++A
Sbjct: 80 LSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQ 139
Query: 345 G-SIPTSLANLTQLVYLDLSFNK 366
+P +NLT L +LDLS NK
Sbjct: 140 SFKLPEYFSNLTNLEHLDLSSNK 162
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 114/267 (42%), Gaps = 61/267 (22%)
Query: 284 TLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLP------------------- 324
TLE LD+S N + S+ K ++L +L+ +N S + P
Sbjct: 173 TLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 230
Query: 325 -DSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKF--VGPIPSLHMSKNLT 381
++ +L NL+ LDLA P L+ LT+L L L N+ + P+ L LT
Sbjct: 231 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTA---LT 285
Query: 382 HLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGG 441
+L+L+ N L + +L NL Y+ L +N+++ P S SL LQ+L NK
Sbjct: 286 NLELNENQLEDI---SPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVS- 339
Query: 442 LIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLH 501
D+S S+ +L N+ L N+++ LA + R+
Sbjct: 340 ----------------DVS----------SLANLTNINWLSAGHNQISDLTPLANLTRIT 373
Query: 502 NLAKLELSYNNLTVNAGSDSSFPSQVR 528
L + ++ N VN ++ S P+ V+
Sbjct: 374 QLGLNDQAWTNAPVNYKANVSIPNTVK 400
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 115/242 (47%), Gaps = 45/242 (18%)
Query: 325 DSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLD 384
D + L NL++++ + P L NLT+LV + ++ N+ P +++ NLT L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT-NLTGLT 113
Query: 385 LSYNALPGAISSTD-WEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLI 443
L N I+ D ++L+NL ++L N++ S +L L LQQL N+ L
Sbjct: 114 LFNNQ----ITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNFG-NQVTDLK 166
Query: 444 PEFSNASSSALDTIDLSGNRLEGPIPMSIF-DLRNLKILILSSNKLNGTVQLAAIQRLHN 502
P A+ + L+ +D+S N++ +S+ L NL+ LI ++N+++ L L N
Sbjct: 167 PL---ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGI---LTN 217
Query: 503 LAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGE 562
L +L L+ N +L+ I L + + L +LDL++NQIS
Sbjct: 218 LDELSLNGN------------------------QLKDIGTLASLTNLTDLDLANNQISNL 253
Query: 563 IP 564
P
Sbjct: 254 AP 255
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 717 CGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFP 758
L L LNGNQL +LA+ NL LDL NN+I + P
Sbjct: 216 TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 255
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 9/160 (5%)
Query: 404 NLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGL-IPEFSNASSSALDTIDLSGN 462
N Y++L+ NS+ + L L+ LQL++N + + F+ S L+T++L N
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPS--LNTLELFDN 93
Query: 463 RLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDS 521
RL +P F+ L L+ L L +N + ++ A R+ +L +L+L + S++
Sbjct: 94 RLTT-VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELK-RLEYISEA 150
Query: 522 SFPSQV--RTLRLASCKLRVIPNLKNQSKLFNLDLSDNQI 559
+F V R L L C L+ IPNL +L L+LS N++
Sbjct: 151 AFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRL 190
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 88/185 (47%), Gaps = 39/185 (21%)
Query: 366 KFVGPIPSLHMSKNLTH-LDL-SYNALPG------------AISSTDWEHLSNLVYVDLR 411
K + + L +SKNL +++ ++N LP + + +E+LS L + LR
Sbjct: 56 KHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLR 115
Query: 412 YNSLNGSIPGSLFS-LPMLQQLQLAENK---------FGGLI------------PEFSNA 449
N + SIP F+ +P L++L L E K F GL+ + N
Sbjct: 116 NNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNL 174
Query: 450 SS-SALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLEL 508
++ L+ ++LSGNRL+ P S L +L+ L L ++ T++ A L +L +L L
Sbjct: 175 TALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV-ATIERNAFDDLKSLEELNL 233
Query: 509 SYNNL 513
S+NNL
Sbjct: 234 SHNNL 238
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 129/287 (44%), Gaps = 21/287 (7%)
Query: 258 FFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGN---SLLQGSLPDFPKNSSLRTLML 314
F L L L+ + L P ++ + TL+ L LS N +L Q S +FP + L +
Sbjct: 277 FSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS--IK 333
Query: 315 SNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTS------LANLTQLVYLDLSFNKFV 368
NT + + NL+NL LDL+ I TS L NL+ L L+LS+N+ +
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLS----HDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389
Query: 369 G-PIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLP 427
+ L LDL++ L + + +++L L ++L ++ L+ S LP
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449
Query: 428 MLQQLQLAENKF--GGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSS 485
LQ L L N F G + S + L+ + LS L + L+ + + LS
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509
Query: 486 NKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRL 532
N+L + + A+ L + L L+ N++++ S SQ RT+ L
Sbjct: 510 NRLTSS-SIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINL 554
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 29/214 (13%)
Query: 176 SGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIH------- 228
+G L+NL LREL L +I + C + LQ L+LS + P+
Sbjct: 343 TGCLENLENLRELDLSHDDIETS--DCCNLQLRNLSHLQSLNLS---YNEPLSLKTEAFK 397
Query: 229 --PSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLE 286
P L +L L+ RL D SP + L L LSHS L+ + + + L+
Sbjct: 398 ECPQL-ELLDLAFTRLKVKDAQSP----FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452
Query: 287 TLDLSGNSLLQGSLPDFPKNSSLRT------LMLSNTNFSGVLPDSIGNLKNLSRLDLAL 340
L+L GN +G++ K +SL+T L+LS + S + + +LK ++ +DL+
Sbjct: 453 HLNLQGNHFPKGNI---QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509
Query: 341 CYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSL 374
S +L++L +YL+L+ N +PSL
Sbjct: 510 NRLTSSSIEALSHLKG-IYLNLASNHISIILPSL 542
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 9/160 (5%)
Query: 404 NLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGL-IPEFSNASSSALDTIDLSGN 462
N Y++L+ NS+ + L L+ LQL++N + + F+ S L+T++L N
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPS--LNTLELFDN 93
Query: 463 RLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDS 521
RL +P F+ L L+ L L +N + ++ A R+ +L +L+L + S++
Sbjct: 94 RL-TTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELK-RLEYISEA 150
Query: 522 SFPSQV--RTLRLASCKLRVIPNLKNQSKLFNLDLSDNQI 559
+F V R L L C L+ IPNL +L L+LS N++
Sbjct: 151 AFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRL 190
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 88/185 (47%), Gaps = 39/185 (21%)
Query: 366 KFVGPIPSLHMSKNLTH-LDL-SYNALPG------------AISSTDWEHLSNLVYVDLR 411
K + + L +SKNL +++ ++N LP + + +E+LS L + LR
Sbjct: 56 KHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLR 115
Query: 412 YNSLNGSIPGSLFS-LPMLQQLQLAENK---------FGGLI------------PEFSNA 449
N + SIP F+ +P L++L L E K F GL+ + N
Sbjct: 116 NNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNL 174
Query: 450 SS-SALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLEL 508
++ L+ ++LSGNRL+ P S L +L+ L L ++ T++ A L +L +L L
Sbjct: 175 TALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV-ATIERNAFDDLKSLEELNL 233
Query: 509 SYNNL 513
S+NNL
Sbjct: 234 SHNNL 238
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 121/290 (41%), Gaps = 46/290 (15%)
Query: 176 SGLLQNLAELRELYLDGANISA--PGIEWCQALSSLVPKLQVLSLSS-CYLSGPIHPSLA 232
S + ++EL L A+++ GIE +L LV L S C ++ PSL
Sbjct: 270 SSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLV--LNANSFDQLCQINAASFPSLR 327
Query: 233 KLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGT--FPEKILQVHTLETLDL 290
L +R + DL + E L NL L LSHS + + ++ + L+ L+L
Sbjct: 328 DLYIKGNMR--KLDLGTRCLEKLE---NLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNL 382
Query: 291 SGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDS-IGNLKNLSRLDLALCYFDGSIPT 349
S N L F + L L ++ T+ P S NL L L+L+ C D S
Sbjct: 383 SYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQH 442
Query: 350 SLANLTQLVYLDLSFNKF-------------VGPIP---------------SLHMSKNLT 381
LA L L +L+L N F VG + + H +N+
Sbjct: 443 LLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVN 502
Query: 382 HLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQ 431
HLDLS+N+L G S HL L Y+++ N++ IP L LP L Q
Sbjct: 503 HLDLSHNSLTGD-SMDALSHLKGL-YLNMASNNIR-IIPPHL--LPALSQ 547
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 37/290 (12%)
Query: 284 TLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYF 343
++E+++L + S F + ++ L L+ + +G LP I + +L +L L F
Sbjct: 254 SVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSF 312
Query: 344 DGSIPTSLANLTQL--VYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGA-ISSTDWE 400
D + A+ L +Y+ + K L +NL LDLS++ + + + +
Sbjct: 313 DQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLK 372
Query: 401 HLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPE----------FSNAS 450
+L +L Y++L YN G + P L+ L +A P N S
Sbjct: 373 NLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLS 432
Query: 451 SSALDT--------------IDLSGNRLE-GPIPMS--IFDLRNLKILILSSNKLNGTVQ 493
LDT ++L GN + G I + + + +L+ILILSS L ++
Sbjct: 433 HCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNL-LSID 491
Query: 494 LAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRL--ASCKLRVIP 541
A L N+ L+LS+N+LT G S ++ L L AS +R+IP
Sbjct: 492 QQAFHGLRNVNHLDLSHNSLT---GDSMDALSHLKGLYLNMASNNIRIIP 538
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 135/348 (38%), Gaps = 87/348 (25%)
Query: 260 NLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNF 319
NL L L+ ++N + H L T+ L+GN L+ + L+ L L+ T
Sbjct: 57 NLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGI 116
Query: 320 SGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKN 379
S + + NL+NL L L GS S NL P ++N
Sbjct: 117 SNLEFIPVHNLENLESLHL------GSNHISSINL-----------------PENFPTQN 153
Query: 380 LTHLDLSYNALPGAISSTDWEHLSNLVYVDLRY--NSLNGSIPGSLFSLPMLQQLQLAEN 437
L LD NA+ IS D L + L + N + G PG+ S + Q L
Sbjct: 154 LKVLDFQNNAI-HYISRKDTNSLEQATNLSLNFNGNDIKGIEPGAFIS-KIFQSL----- 206
Query: 438 KFGG---LIPEFSNASSSAL---------DTID--LSGNRLEGPIPMSIFDLR------- 476
KFGG L F +S L DT D L+ EG MS+ +
Sbjct: 207 KFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDDQYLTSATFEGLCDMSVESINLQKHRFS 266
Query: 477 -----------NLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNL----TVNAGSDS 521
++ L L++ LNG + I+ +++L KL L+ N+ +NA +
Sbjct: 267 DLSSSTFRCFTRVQELDLTAAHLNGLP--SGIEGMNSLKKLVLNANSFDQLCQINA---A 321
Query: 522 SFPS--------QVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISG 561
SFPS +R L L + R + L+N K LDLS + I
Sbjct: 322 SFPSLRDLYIKGNMRKLDLGT---RCLEKLENLQK---LDLSHSDIEA 363
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 12/173 (6%)
Query: 392 GAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASS 451
G + ++L+NL+ ++L+ N + P L +L + +L+L+ N + + A
Sbjct: 58 GVTTIEGIQYLNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKNV---SAIAGL 112
Query: 452 SALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYN 511
++ T+DL+ ++ P++ L NL++L L N++ LA + L LS
Sbjct: 113 QSIKTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQITNISPLAGLTNLQ-----YLSIG 165
Query: 512 NLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIP 564
N VN + + S++ TLR K+ I L + L + L DNQIS P
Sbjct: 166 NNQVNDLTPLANLSKLTTLRADDNKISDISPLASLPNLIEVHLKDNQISDVSP 218
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 86/331 (25%), Positives = 134/331 (40%), Gaps = 62/331 (18%)
Query: 150 MTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSL 209
T+L LDL++ + G P ++ NL L++L L + + CQ ++
Sbjct: 274 FTQLQELDLTATHLKGLPSGMKGLNL---------LKKLVLSVNHFD----QLCQISAAN 320
Query: 210 VPKLQVLSLSSCYLSGPIHP------SLAKLQSLSVIRLDQNDLLSP--VPEFLADFFNL 261
P SL+ Y+ G + L KL +L + L ND+ + L + +L
Sbjct: 321 FP-----SLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHL 375
Query: 262 TSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSG 321
+L LSH+ G + + LE LDL+ + L + P P
Sbjct: 376 QTLNLSHNEPLGLQSQAFKECPQLELLDLAF-TRLHINAPQSP----------------- 417
Query: 322 VLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFV-GPIPSLHMSKNL 380
NL L L+L C+ D S LA L L +L+L N F G I ++ + +
Sbjct: 418 -----FQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTV 472
Query: 381 THLDLSYNALPG--AISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENK 438
L++ + G +I + L + +VDL +NSL SL L + L LA N
Sbjct: 473 GSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAANS 531
Query: 439 FG----GLIPEFSNASSSALDTIDLSGNRLE 465
L+P S S TI+LS N L+
Sbjct: 532 INIISPRLLPILSQQS-----TINLSHNPLD 557
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 119/267 (44%), Gaps = 34/267 (12%)
Query: 258 FFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGN---SLLQGSLPDFPKNSSLRTLML 314
F L L L+ + L G P + ++ L+ L LS N L Q S +FP + L +
Sbjct: 274 FTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLY--IR 330
Query: 315 SNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSL--ANLTQLVYLDLSFNKFVG-PI 371
N + + L NL LDL+ + S SL NL+ L L+LS N+ +G
Sbjct: 331 GNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQS 390
Query: 372 PSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQ 431
+ L LDL++ L + +++L L ++L Y L+ S L LP+L+
Sbjct: 391 QAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRH 450
Query: 432 LQLAENKF-GGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNG 490
L L N F G I + ++ L T+ +L++LILSS L
Sbjct: 451 LNLKGNHFQDGTITK-----TNLLQTVG------------------SLEVLILSSCGL-L 486
Query: 491 TVQLAAIQRLHNLAKLELSYNNLTVNA 517
++ A L ++ ++LS+N+LT ++
Sbjct: 487 SIDQQAFHSLGKMSHVDLSHNSLTCDS 513
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 133/348 (38%), Gaps = 77/348 (22%)
Query: 255 LADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLML 314
+ NLT L L+ ++N + H L TL L+GN L+ + SL+ L L
Sbjct: 50 FSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLFL 109
Query: 315 SNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSL 374
T S + + NL+NL L Y + +S+ KF P
Sbjct: 110 IQTGISNLEFIPVHNLENLESL-----YLGSNHISSI--------------KFPKDFP-- 148
Query: 375 HMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLN-GSIPGSLFSLPMLQQLQ 433
++NL LD NA+ IS D L + + L +N N I F + Q L
Sbjct: 149 --ARNLKVLDFQNNAI-HYISREDMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQSL- 204
Query: 434 LAENKFGGLIPEFS-------NASSSAL--------DTIDLSGNRLEGPIPMSI--FDLR 476
FGG P S N+++ +L D D+S L+G MS+ +L+
Sbjct: 205 ----NFGG-TPNLSVIFNGLQNSTTQSLWLGTFEDIDDEDISSAMLKGLCEMSVESLNLQ 259
Query: 477 NLKILILSSNKLNGTVQL--------------AAIQRLHNLAKLELSYNNL-TVNAGSDS 521
+ +SS QL + ++ L+ L KL LS N+ + S +
Sbjct: 260 EHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAA 319
Query: 522 SFPS--------QVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISG 561
+FPS V+ L L L + NL+ LDLS N I
Sbjct: 320 NFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQ------TLDLSHNDIEA 361
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 80/210 (38%), Gaps = 37/210 (17%)
Query: 308 SLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKF 367
S+ +L L FS + + L LDL + G +P+ + L L L LS N F
Sbjct: 252 SVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHF 310
Query: 368 -------VGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIP 420
PSL THL + N + E L NL +DL +N + S
Sbjct: 311 DQLCQISAANFPSL------THLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDC 364
Query: 421 GSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKI 480
SL L+ L S L T++LS N G + + L++
Sbjct: 365 CSL----QLKNL-------------------SHLQTLNLSHNEPLGLQSQAFKECPQLEL 401
Query: 481 LILSSNKLNGTVQLAAIQRLHNLAKLELSY 510
L L+ +L+ + Q LH L L L+Y
Sbjct: 402 LDLAFTRLHINAPQSPFQNLHFLQVLNLTY 431
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 141/325 (43%), Gaps = 54/325 (16%)
Query: 149 GMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQ-NLAELRELYLDGANISAPGIEWCQALS 207
G++ L+ L L N+F L+LE +GL + L + LDGA +S + +L
Sbjct: 77 GLSSLIILKLD-YNQF---LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132
Query: 208 SLVPK---LQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADF--FNLT 262
LV + ++ + +S +L+ ++ V+ L N + S E L +F + T
Sbjct: 133 MLVLRDNNIKKIQPASFFLN---------MRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183
Query: 263 SLRLSHSRLNGTFP-----EKI---LQVHTLETLDLSGNSLLQGSLPDF---PKNSSLRT 311
LRLS L EK + ++ TLDLSGN + F + +++
Sbjct: 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243
Query: 312 LMLSN----------TNFSGVLPDSIGNLKNLSRLDLALCYFDGS-----IPTSLANLTQ 356
L+LSN TNF PD+ K L + C S + + ++ T
Sbjct: 244 LILSNSYNMGSSFGHTNFKD--PDNF-TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD 300
Query: 357 LVYLDLSFNKFVGPIPSLHMSKNLTHL---DLSYNALPGAISSTDWEHLSNLVYVDLRYN 413
L L L+ N+ + I + LTHL +LS N L G+I S +E+L L +DL YN
Sbjct: 301 LEQLTLAQNE-INKIDD-NAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYN 357
Query: 414 SLNGSIPGSLFSLPMLQQLQLAENK 438
+ S LP L++L L N+
Sbjct: 358 HIRALGDQSFLGLPNLKELALDTNQ 382
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 128/317 (40%), Gaps = 34/317 (10%)
Query: 213 LQVLSLSSCYLSGPIHPS--LAKLQSLSVIRLDQNDLLSPVP-EFLADFFNLTSLRLSHS 269
L+VL+L+ C L G + L SL ++ L N++ P F + L L+ +
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164
Query: 270 RLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDF----------PKNSSLRTLMLSNTNF 319
++ E +L L +S+ + ++ KN+S+ TL LS F
Sbjct: 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224
Query: 320 SGVLP----DSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLH 375
+ D+I K + L L+ Y GS + + D F G S
Sbjct: 225 KESMAKRFFDAIAGTK-IQSLILSNSYNMGS------SFGHTNFKDPDNFTFKGLEAS-- 275
Query: 376 MSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLA 435
+ DLS + + + S + H ++L + L N +N + + L L +L L+
Sbjct: 276 ---GVKTCDLSKSKIFALLKSV-FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331
Query: 436 ENKFGGLIPE-FSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQL 494
+N G + F N L+ +DLS N + S L NLK L L +N+L +V
Sbjct: 332 QNFLGSIDSRMFENLDK--LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPD 388
Query: 495 AAIQRLHNLAKLELSYN 511
RL +L K+ L N
Sbjct: 389 GIFDRLTSLQKIWLHTN 405
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 94/265 (35%), Gaps = 54/265 (20%)
Query: 699 NLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSL-ANCRNLVVLDLGNNKIRDTF 757
NL G LSG F L L L N + P S N R VLDL NK++
Sbjct: 114 NLDGAVLSGNF---FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170
Query: 758 PWWLENIXXXXXXXXXXNSFYGNISCRENGDSW------------PKLQIVDLASNNFGG 805
L N +S I+ ++ + W + +DL+ N F
Sbjct: 171 EEDLLNFQGKHFTLLRLSS----ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226
Query: 806 RVPQKCITSWKA------MMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMEL 859
+ ++ + ++S+ S+F +F +D T KGLE
Sbjct: 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF----------KDPDNFTFKGLEASG 276
Query: 860 VK---------------ILSIFTSID---FSRNNFDGPIPEEIGRLKSLHGLNLSQNALT 901
VK + S FT ++ ++N + L L LNLSQN L
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 902 GPIPSAIGNLQQLESLDLSMNHLSG 926
NL +LE LDLS NH+
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRA 361
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 13/149 (8%)
Query: 349 TSLANLTQLVYLDLSFNKFV----GPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSN 404
++L LT L YL L+ N+ G L K L ++ +LP + ++ L+N
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV----FDKLTN 134
Query: 405 LVYVDLRYNSLNGSIPGSLF-SLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNR 463
L Y++L +N L S+P +F L L +L L+ N+ L PE + L + L N+
Sbjct: 135 LTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQ 192
Query: 464 LEGPIPMSIFD-LRNLKILILSSNKLNGT 491
L+ +P +FD L +L+ + L N + T
Sbjct: 193 LKS-VPDGVFDRLTSLQYIWLHDNPWDCT 220
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 233 KLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKIL-QVHTLETLDLS 291
KL +L + L +N L S NLT L L+H++L + P+ + ++ L LDLS
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLS 165
Query: 292 GNSLLQGSLPD--FPKNSSLRTLMLSNTNFSGVLPDSI 327
N L SLP+ F K + L+ L L V PD +
Sbjct: 166 YNQL--QSLPEGVFDKLTQLKDLRLYQNQLKSV-PDGV 200
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 115/263 (43%), Gaps = 49/263 (18%)
Query: 279 ILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDL 338
+L V LE DLS SL +G + PK L TL +SN N + D+ +L L L
Sbjct: 124 LLTVLVLERNDLS--SLPRGIFHNTPK---LTTLSMSNNNLERIEDDTFQATTSLQNLQL 178
Query: 339 A---LCYFDGSIPTSL--ANLTQLVYLDLSFNKFVGPIPSLHMSKN---------LTHLD 384
+ L + D S+ SL AN++ + L+ V + + H S N LT L
Sbjct: 179 SSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK 238
Query: 385 LSYNALPGAISSTDWE-HLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENK----- 438
L +N L + T W + LV VDL YN L + + L++L ++ N+
Sbjct: 239 LQHNNL----TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 294
Query: 439 -FGGLIPEFSNASSSALDTIDLSGNRL---EGPIPMSIFDLRNLKILILSSNKLNGTVQL 494
+G IP L +DLS N L E P FD L+ L L N + T++L
Sbjct: 295 LYGQPIP--------TLKVLDLSHNHLLHVERNQPQ--FD--RLENLYLDHNSI-VTLKL 341
Query: 495 AAIQRLHNLAKLELSYNNLTVNA 517
+ H L L LS+N+ N+
Sbjct: 342 ST---HHTLKNLTLSHNDWDCNS 361
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 406 VYVDLRYNSLNGSIPGSLF-SLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRL 464
Y+DL NSL S+P +F L L QL L NK L N +S L ++LS N+L
Sbjct: 31 TYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS-LTYLNLSTNQL 88
Query: 465 EGPIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNL 513
+ +P +FD L LK L L++N+L ++ +L L L L N L
Sbjct: 89 QS-LPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL 136
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 115/263 (43%), Gaps = 49/263 (18%)
Query: 279 ILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDL 338
+L V LE DLS SL +G + PK L TL +SN N + D+ +L L L
Sbjct: 118 LLTVLVLERNDLS--SLPRGIFHNTPK---LTTLSMSNNNLERIEDDTFQATTSLQNLQL 172
Query: 339 A---LCYFDGSIPTSL--ANLTQLVYLDLSFNKFVGPIPSLHMSKN---------LTHLD 384
+ L + D S+ SL AN++ + L+ V + + H S N LT L
Sbjct: 173 SSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK 232
Query: 385 LSYNALPGAISSTDWE-HLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENK----- 438
L +N L + T W + LV VDL YN L + + L++L ++ N+
Sbjct: 233 LQHNNL----TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 288
Query: 439 -FGGLIPEFSNASSSALDTIDLSGNRL---EGPIPMSIFDLRNLKILILSSNKLNGTVQL 494
+G IP L +DLS N L E P FD L+ L L N + T++L
Sbjct: 289 LYGQPIP--------TLKVLDLSHNHLLHVERNQPQ--FD--RLENLYLDHNSI-VTLKL 335
Query: 495 AAIQRLHNLAKLELSYNNLTVNA 517
+ H L L LS+N+ N+
Sbjct: 336 ST---HHTLKNLTLSHNDWDCNS 355
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 115/242 (47%), Gaps = 45/242 (18%)
Query: 325 DSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLD 384
D + L NL++++ + P L NLT+LV + ++ N+ P +++ NLT L
Sbjct: 61 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT-NLTGLT 117
Query: 385 LSYNALPGAISSTD-WEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLI 443
L N I+ D ++L+NL ++L N++ S +L L LQQL N+ L
Sbjct: 118 LFNNQ----ITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFG-NQVTDLK 170
Query: 444 PEFSNASSSALDTIDLSGNRLEGPIPMSIF-DLRNLKILILSSNKLNGTVQLAAIQRLHN 502
P A+ + L+ +D+S N++ +S+ L NL+ LI ++N+++ L L N
Sbjct: 171 PL---ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGI---LTN 221
Query: 503 LAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGE 562
L +L L+ N +L+ I L + + L +LDL++NQIS
Sbjct: 222 LDELSLNGN------------------------QLKDIGTLASLTNLTDLDLANNQISNL 257
Query: 563 IP 564
P
Sbjct: 258 AP 259
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 717 CGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFP 758
L L LNGNQL +LA+ NL LDL NN+I + P
Sbjct: 220 TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 259
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 9/204 (4%)
Query: 238 SVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQ 297
+++ L ND+ + +L +L L +++++ + + L+ L +S N L++
Sbjct: 57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE 116
Query: 298 GSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFD--GSIPTSLANLT 355
P+ P SSL L + + V L+N++ +++ + G P + L
Sbjct: 117 IP-PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL- 172
Query: 356 QLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSL 415
+L YL +S K G IP + + L L L +N + AI D S L + L +N +
Sbjct: 173 KLNYLRISEAKLTG-IPK-DLPETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQI 229
Query: 416 NGSIPGSLFSLPMLQQLQLAENKF 439
GSL LP L++L L NK
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKL 253
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 115/243 (47%), Gaps = 47/243 (19%)
Query: 325 DSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLD 384
D + L NL++++ + P L NLT+LV + ++ N+ P +++ NLT L
Sbjct: 62 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT-NLTGLT 118
Query: 385 LSYNALPGAISSTD-WEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLI 443
L N I+ D ++L+NL ++L N++ S +L L LQQL FG +
Sbjct: 119 LFNNQ----ITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL-----SFGNQV 167
Query: 444 PEFSN-ASSSALDTIDLSGNRLEGPIPMSIF-DLRNLKILILSSNKLNGTVQLAAIQRLH 501
+ A+ + L+ +D+S N++ +S+ L NL+ LI ++N+++ L L
Sbjct: 168 TDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGI---LT 221
Query: 502 NLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISG 561
NL +L L+ N +L+ I L + + L +LDL++NQIS
Sbjct: 222 NLDELSLNGN------------------------QLKDIGTLASLTNLTDLDLANNQISN 257
Query: 562 EIP 564
P
Sbjct: 258 LAP 260
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 717 CGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFP 758
L L LNGNQL +LA+ NL LDL NN+I + P
Sbjct: 221 TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 260
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 38/192 (19%)
Query: 301 PDFPKNSSLRTL---MLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQL 357
PD PK++++ L +L + + ++P + NL R +L DG++P L
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------L 79
Query: 358 VYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNG 417
LDLS N+ L L L LP L +D+ +N L
Sbjct: 80 GTLDLSHNQ-------------LQSLPLLGQTLPA------------LTVLDVSFNRLTS 114
Query: 418 SIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD-LR 476
G+L L LQ+L L N+ L P + L+ + L+ N+L +P + + L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK-LEKLSLANNQLTE-LPAGLLNGLE 172
Query: 477 NLKILILSSNKL 488
NL L+L N L
Sbjct: 173 NLDTLLLQENSL 184
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 57/136 (41%), Gaps = 2/136 (1%)
Query: 380 LTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKF 439
L LDLS NA + T + L +L + L L PG L LQ L L +N
Sbjct: 81 LEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNL 140
Query: 440 GGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQR 499
L P+ + L + L GNR+ + L +L L+L N + V A +
Sbjct: 141 QAL-PDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHV-ARVHPHAFRD 198
Query: 500 LHNLAKLELSYNNLTV 515
L L L L NNL++
Sbjct: 199 LGRLMTLYLFANNLSM 214
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Query: 457 IDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVN 516
I L GNR+ S RNL IL L SN L G + AA L L +L+LS +N +
Sbjct: 36 IFLHGNRISYVPAASFQSCRNLTILWLHSNALAG-IDAAAFTGLTLLEQLDLS-DNAQLR 93
Query: 517 AGSDSSFP--SQVRTLRLASCKLRVI-PNL-KNQSKLFNLDLSDNQISGEIPNWVWEIGN 572
++F + TL L C L+ + P L + + L L L DN + N ++GN
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGN 153
Query: 573 V 573
+
Sbjct: 154 L 154
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 38/192 (19%)
Query: 301 PDFPKNSSLRTL---MLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQL 357
PD PK++++ L +L + + ++P + NL R +L DG++P L
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------L 79
Query: 358 VYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNG 417
LDLS N+ L L L LP L +D+ +N L
Sbjct: 80 GTLDLSHNQ-------------LQSLPLLGQTLPA------------LTVLDVSFNRLTS 114
Query: 418 SIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD-LR 476
G+L L LQ+L L N+ L P + L+ + L+ N+L +P + + L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK-LEKLSLANNQLTE-LPAGLLNGLE 172
Query: 477 NLKILILSSNKL 488
NL L+L N L
Sbjct: 173 NLDTLLLQENSL 184
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 111/278 (39%), Gaps = 61/278 (21%)
Query: 288 LDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSI 347
LDL N + + DF +L TL+L N S + P + L L RL L+
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS-------- 108
Query: 348 PTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVY 407
L L + M K L L + N + + + + L+ ++
Sbjct: 109 KNQLKELPE------------------KMPKTLQELRVHENEI-TKVRKSVFNGLNQMIV 149
Query: 408 VDLRYNSL--NGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLE 465
V+L N L +G G+ + L +++A+ I +L + L GN++
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTN----ITTIPQGLPPSLTELHLDGNKIT 205
Query: 466 GPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT-VNAGSDSSFP 524
V A+++ L+NLAKL LS+N+++ V+ GS ++ P
Sbjct: 206 -------------------------KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240
Query: 525 SQVRTLRLASCKLRVIP-NLKNQSKLFNLDLSDNQISG 561
+R L L + KL +P L + + + L +N IS
Sbjct: 241 -HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 277
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 38/192 (19%)
Query: 301 PDFPKNSSLRTL---MLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQL 357
PD PK++++ L +L + + ++P + NL R +L DG++P L
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------L 79
Query: 358 VYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNG 417
LDLS N+ L L L LP L +D+ +N L
Sbjct: 80 GTLDLSHNQ-------------LQSLPLLGQTLPA------------LTVLDVSFNRLTS 114
Query: 418 SIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD-LR 476
G+L L LQ+L L N+ L P + L+ + L+ N+L +P + + L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK-LEKLSLANNQLTE-LPAGLLNGLE 172
Query: 477 NLKILILSSNKL 488
NL L+L N L
Sbjct: 173 NLDTLLLQENSL 184
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 111/278 (39%), Gaps = 61/278 (21%)
Query: 288 LDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSI 347
LDL N + + DF +L TL+L N S + P + L L RL L+
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS-------- 108
Query: 348 PTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVY 407
L L + M K L L + N + + + + L+ ++
Sbjct: 109 KNQLKELPE------------------KMPKTLQELRVHENEI-TKVRKSVFNGLNQMIV 149
Query: 408 VDLRYNSL--NGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLE 465
V+L N L +G G+ + L +++A+ I +L + L GN++
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTN----ITTIPQGLPPSLTELHLDGNKIT 205
Query: 466 GPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLT-VNAGSDSSFP 524
V A+++ L+NLAKL LS+N+++ V+ GS ++ P
Sbjct: 206 -------------------------KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240
Query: 525 SQVRTLRLASCKLRVIP-NLKNQSKLFNLDLSDNQISG 561
+R L L + KL +P L + + + L +N IS
Sbjct: 241 -HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 277
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 38/192 (19%)
Query: 301 PDFPKNSSLRTL---MLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQL 357
PD PK++++ L +L + + ++P + NL R +L DG++P L
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------L 79
Query: 358 VYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNG 417
LDLS N+ L L L LP L +D+ +N L
Sbjct: 80 GTLDLSHNQ-------------LQSLPLLGQTLPA------------LTVLDVSFNRLTS 114
Query: 418 SIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD-LR 476
G+L L LQ+L L N+ L P + L+ + L+ N+L +P + + L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK-LEKLSLANNQLTE-LPAGLLNGLE 172
Query: 477 NLKILILSSNKL 488
NL L+L N L
Sbjct: 173 NLDTLLLQENSL 184
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Query: 260 NLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNF 319
NL SL LSH+ LN E + V L LDLS N L F +L L+L N +
Sbjct: 65 NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI 124
Query: 320 SGVLPDSIGNLKNLSRLDLA---LCYFDGSIPTSLANLTQLVYLDLSFNKF 367
V ++ ++ L +L L+ + F + L +L+ LDLS NK
Sbjct: 125 VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 6/151 (3%)
Query: 160 SLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSL-VPKLQVLSL 218
SL + A L L + NLS L R L +S + + + + + VP L+ L L
Sbjct: 36 SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95
Query: 219 SSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEK 278
SS +L + LQ+L V+ L N ++ D L L LS +++ FP +
Sbjct: 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVE 154
Query: 279 IL----QVHTLETLDLSGNSLLQGSLPDFPK 305
++ ++ L LDLS N L + L D K
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 383 LDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGL 442
LDLS+N L + L+NL + L +N LN + +P L+ L L+ N L
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 443 IPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKL 488
EF + AL+ + L N + + D+ L+ L LS N++
Sbjct: 104 -DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 65/151 (43%), Gaps = 19/151 (12%)
Query: 660 IPETLCRAKYLLVLDLSKNKLS----GKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPG 715
+P++L Y +LDLS N LS PT L + +L L N L+ S F
Sbjct: 33 VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLL----LSHNHLNFISSEAFVP 86
Query: 716 NCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKI----RDTFPWWLENIXXXXXXX 771
L LDL+ N L ++ + L VL L NN I R+ F E++
Sbjct: 87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF----EDMAQLQKLY 142
Query: 772 XXXNSFYG-NISCRENGDSWPKLQIVDLASN 801
N + ++G+ PKL ++DL+SN
Sbjct: 143 LSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 56/135 (41%), Gaps = 2/135 (1%)
Query: 380 LTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKF 439
L LDLS NA ++ + L L + L L PG L LQ L L +N
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 140
Query: 440 GGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQR 499
L P+ + L + L GNR+ + L +L L+L N++ V A +
Sbjct: 141 QAL-PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV-AHVHPHAFRD 198
Query: 500 LHNLAKLELSYNNLT 514
L L L L NNL+
Sbjct: 199 LGRLMTLYLFANNLS 213
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 212 KLQVLSLSSCYLS--GP-IHPSLAKLQSLSVIRLDQNDLLSPVPE-FLADFFNLTSLRLS 267
+L L L C L GP + LA LQ L + Q++ L +P+ D NLT L L
Sbjct: 105 RLHTLHLDRCGLQELGPGLFRGLAALQYLYL----QDNALQALPDDTFRDLGNLTHLFLH 160
Query: 268 HSRLNGTFPEKILQ-VHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDS 326
+R++ + PE+ + +H+L+ L L N + F L TL L N S + ++
Sbjct: 161 GNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 219
Query: 327 IGNLKNLSRLDL 338
+ L+ L L L
Sbjct: 220 LAPLRALQYLRL 231
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 452 SALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYN 511
+A I L GNR+ S RNL IL L SN L + AA L L +L+LS +
Sbjct: 31 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLS-D 88
Query: 512 NLTVNAGSDSSFP--SQVRTLRLASCKLRVI-PNL-KNQSKLFNLDLSDNQISGEIPNWV 567
N + + ++F ++ TL L C L+ + P L + + L L L DN + +
Sbjct: 89 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 148
Query: 568 WEIGNV 573
++GN+
Sbjct: 149 RDLGNL 154
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 56/135 (41%), Gaps = 2/135 (1%)
Query: 380 LTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKF 439
L LDLS NA ++ + L L + L L PG L LQ L L +N
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 440 GGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQR 499
L P+ + L + L GNR+ + L +L L+L N++ V A +
Sbjct: 142 QAL-PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV-AHVHPHAFRD 199
Query: 500 LHNLAKLELSYNNLT 514
L L L L NNL+
Sbjct: 200 LGRLMTLYLFANNLS 214
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 212 KLQVLSLSSCYLS--GP-IHPSLAKLQSLSVIRLDQNDLLSPVPE-FLADFFNLTSLRLS 267
+L L L C L GP + LA LQ L + Q++ L +P+ D NLT L L
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYL----QDNALQALPDDTFRDLGNLTHLFLH 161
Query: 268 HSRLNGTFPEKILQ-VHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDS 326
+R++ + PE+ + +H+L+ L L N + F L TL L N S + ++
Sbjct: 162 GNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220
Query: 327 IGNLKNLSRLDL 338
+ L+ L L L
Sbjct: 221 LAPLRALQYLRL 232
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 452 SALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYN 511
+A I L GNR+ S RNL IL L SN L + AA L L +L+LS +
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLS-D 89
Query: 512 NLTVNAGSDSSFP--SQVRTLRLASCKLRVI-PNL-KNQSKLFNLDLSDNQISGEIPNWV 567
N + + ++F ++ TL L C L+ + P L + + L L L DN + +
Sbjct: 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149
Query: 568 WEIGNV 573
++GN+
Sbjct: 150 RDLGNL 155
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 400 EHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDL 459
++L+NL+ ++L+ N + P L +L + +L+L+ N + + A ++ T+DL
Sbjct: 60 QYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV---SAIAGLQSIKTLDL 114
Query: 460 SGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGS 519
+ ++ P++ L NL++L L N++ LA + L L+ ++LT A
Sbjct: 115 TSTQITDVTPLA--GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL 172
Query: 520 DSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIP 564
S++ TL+ K+ I L + L + L +NQIS P
Sbjct: 173 -----SKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP 212
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 38/192 (19%)
Query: 301 PDFPKNSSLRTL---MLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQL 357
PD PK++++ L +L + + ++P + NL R +L DG++P L
Sbjct: 28 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------L 80
Query: 358 VYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNG 417
LDLS N+ L L L LP L +D+ +N L
Sbjct: 81 GTLDLSHNQ-------------LQSLPLLGQTLPA------------LTVLDVSFNRLTS 115
Query: 418 SIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD-LR 476
G+L L LQ+L L N+ L P + L+ + L+ N L +P + + L
Sbjct: 116 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK-LEKLSLANNNLTE-LPAGLLNGLE 173
Query: 477 NLKILILSSNKL 488
NL L+L N L
Sbjct: 174 NLDTLLLQENSL 185
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 38/192 (19%)
Query: 301 PDFPKNSSLRTL---MLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQL 357
PD PK++++ L +L + + ++P + NL R +L DG++P L
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------L 79
Query: 358 VYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNG 417
LDLS N+ L L L LP L +D+ +N L
Sbjct: 80 GTLDLSHNQ-------------LQSLPLLGQTLPA------------LTVLDVSFNRLTS 114
Query: 418 SIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD-LR 476
G+L L LQ+L L N+ L P + L+ + L+ N L +P + + L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK-LEKLSLANNNLTE-LPAGLLNGLE 172
Query: 477 NLKILILSSNKL 488
NL L+L N L
Sbjct: 173 NLDTLLLQENSL 184
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 379 NLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFS-LPMLQQLQLAEN 437
+L HLDLSYN L +SS+ ++ LS+L +++L N SLFS L LQ L++
Sbjct: 101 SLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159
Query: 438 KFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILIL 483
I A + L+ +++ + L+ P S+ ++N+ LIL
Sbjct: 160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 38/192 (19%)
Query: 301 PDFPKNSSLRTL---MLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQL 357
PD PK++++ L +L + + ++P + NL R +L DG++P L
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-------L 79
Query: 358 VYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNG 417
LDLS N+ L L L LP L +D+ +N L
Sbjct: 80 GTLDLSHNQ-------------LQSLPLLGQTLPA------------LTVLDVSFNRLTS 114
Query: 418 SIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD-LR 476
G+L L LQ+L L N+ L P + L+ + L+ N L +P + + L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK-LEKLSLANNNLTE-LPAGLLNGLE 172
Query: 477 NLKILILSSNKL 488
NL L+L N L
Sbjct: 173 NLDTLLLQENSL 184
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 117/300 (39%), Gaps = 64/300 (21%)
Query: 236 SLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSL 295
+L+V+ D L + F ++ N+ L SHS L+G F + L + + S+
Sbjct: 269 NLNVVGNDSFAWLPQLEYFFLEYNNIQHL-FSHS-LHGLFNVRYLNLKR----SFTKQSI 322
Query: 296 LQGSLPD-----FPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTS 350
SLP F L L + + + G+ + L NL L L+ + TS
Sbjct: 323 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF------TS 376
Query: 351 LANLTQLVYLDLSFNKFVGPIPSLHMSKN---------------LTHLDLSYNALPGAIS 395
L LT ++ L+ P+ L+++KN L LDL N + ++
Sbjct: 377 LRTLTNETFVSLAH----SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 432
Query: 396 STDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSN--ASSSA 453
+W L N+ + L YN + LQL N F L+P A
Sbjct: 433 GQEWRGLENIFEIYLSYN----------------KYLQLTRNSF-ALVPSLQRLMLRRVA 475
Query: 454 LDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNL 513
L +D S P P LRNL IL LS+ + ++ L L L+L +NNL
Sbjct: 476 LKNVDSS------PSPFQ--PLRNLTILDLSN-NNIANINDDMLEGLEKLEILDLQHNNL 526
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 666 RAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLN 725
R L LD+ N +S P K+ +L VLNL+ N LS TF L L L
Sbjct: 57 RYSQLTSLDVGFNTISKLEPELCQKLP-MLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 115
Query: 726 GNQLGGTVPKSLANCRNLVVLDLGNNKIRDT 756
N + +NL+ LDL +N + T
Sbjct: 116 SNSIQKIKNNPFVKQKNLITLDLSHNGLSST 146
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 115/301 (38%), Gaps = 44/301 (14%)
Query: 227 IHPSLA-KLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTL 285
+ P L KL L V+ L N+L + A NLT L L + + ++ L
Sbjct: 74 LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 133
Query: 286 ETLDLSGNSL--------------------------LQGSLPDFPKNSSLRTLMLSNTNF 319
TLDLS N L L+ D NSSL+ L LS+
Sbjct: 134 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 193
Query: 320 SGVLP---DSIGNLKNLSRLDLALC-YFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLH 375
P +IG L L ++ L + LAN T + L LS ++ +
Sbjct: 194 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTF 252
Query: 376 MS---KNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQL 432
+ NLT LDLSYN L + + + L L Y L YN++ SL L ++ L
Sbjct: 253 LGLKWTNLTMLDLSYNNL-NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 311
Query: 433 QLAEN------KFGGL--IPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILS 484
L + L I +FS L+ +++ N + G L NLK L LS
Sbjct: 312 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 371
Query: 485 S 485
+
Sbjct: 372 N 372
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 379 NLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFS-LPMLQQLQLAEN 437
+L HLDLSYN L +SS+ ++ LS+L +++L N SLFS L LQ L++
Sbjct: 75 SLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 133
Query: 438 KFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILIL 483
I A + L+ +++ + L+ P S+ ++N+ LIL
Sbjct: 134 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 179
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 30/130 (23%)
Query: 378 KNLTHLDLSYNALPGAISSTDW-EHLSNLVYVDLRYNSLNGSIPGSLFSL---------- 426
KNLT++D+S N+ + W E + L R +S+ G IP +L L
Sbjct: 387 KNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLNLF 446
Query: 427 ----PMLQQLQLAENKF-----GGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD-LR 476
P L++L ++ NK L+P L + +S N+L+ +P IFD L
Sbjct: 447 SLNLPQLKELYISRNKLMTLPDASLLP--------MLLVLKISRNQLKS-VPDGIFDRLT 497
Query: 477 NLKILILSSN 486
+L+ + L +N
Sbjct: 498 SLQKIWLHTN 507
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 38/192 (19%)
Query: 301 PDFPKNSSLRTL---MLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQL 357
PD PK++++ L +L + + ++P + NL R +L DG++P L
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-------L 79
Query: 358 VYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNG 417
LDLS N+ L L L LP L +D+ +N L
Sbjct: 80 GTLDLSHNQ-------------LQSLPLLGQTLPA------------LTVLDVSFNRLTS 114
Query: 418 SIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD-LR 476
G+L L LQ+L L N+ L P + L+ + L+ N L +P + + L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK-LEKLSLANNNLTE-LPAGLLNGLE 172
Query: 477 NLKILILSSNKL 488
NL L+L N L
Sbjct: 173 NLDTLLLQENSL 184
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 117/300 (39%), Gaps = 64/300 (21%)
Query: 236 SLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSL 295
+L+V+ D L + F ++ N+ L SHS L+G F + L + + S+
Sbjct: 264 NLNVVGNDSFAWLPQLEYFFLEYNNIQHL-FSHS-LHGLFNVRYLNLKR----SFTKQSI 317
Query: 296 LQGSLPD-----FPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTS 350
SLP F L L + + + G+ + L NL L L+ + TS
Sbjct: 318 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF------TS 371
Query: 351 LANLTQLVYLDLSFNKFVGPIPSLHMSKN---------------LTHLDLSYNALPGAIS 395
L LT ++ L+ P+ L+++KN L LDL N + ++
Sbjct: 372 LRTLTNETFVSLAH----SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 427
Query: 396 STDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSN--ASSSA 453
+W L N+ + L YN + LQL N F L+P A
Sbjct: 428 GQEWRGLENIFEIYLSYN----------------KYLQLTRNSF-ALVPSLQRLMLRRVA 470
Query: 454 LDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNL 513
L +D S P P LRNL IL LS+ + ++ L L L+L +NNL
Sbjct: 471 LKNVDSS------PSPFQ--PLRNLTILDLSN-NNIANINDDMLEGLEKLEILDLQHNNL 521
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 666 RAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLN 725
R L LD+ N +S P K+ +L VLNL+ N LS TF L L L
Sbjct: 52 RYSQLTSLDVGFNTISKLEPELCQKLP-MLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 110
Query: 726 GNQLGGTVPKSLANCRNLVVLDLGNNKIRDT 756
N + +NL+ LDL +N + T
Sbjct: 111 SNSIQKIKNNPFVKQKNLITLDLSHNGLSST 141
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 115/301 (38%), Gaps = 44/301 (14%)
Query: 227 IHPSLA-KLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTL 285
+ P L KL L V+ L N+L + A NLT L L + + ++ L
Sbjct: 69 LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 128
Query: 286 ETLDLSGNSL--------------------------LQGSLPDFPKNSSLRTLMLSNTNF 319
TLDLS N L L+ D NSSL+ L LS+
Sbjct: 129 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 188
Query: 320 SGVLP---DSIGNLKNLSRLDLALC-YFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLH 375
P +IG L L ++ L + LAN T + L LS ++ +
Sbjct: 189 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTF 247
Query: 376 MS---KNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQL 432
+ NLT LDLSYN L + + + L L Y L YN++ SL L ++ L
Sbjct: 248 LGLKWTNLTMLDLSYNNL-NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 306
Query: 433 QLAEN------KFGGL--IPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILS 484
L + L I +FS L+ +++ N + G L NLK L LS
Sbjct: 307 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 366
Query: 485 S 485
+
Sbjct: 367 N 367
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 117/300 (39%), Gaps = 64/300 (21%)
Query: 236 SLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSL 295
+L+V+ D L + F ++ N+ L SHS L+G F + L + + S+
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHL-FSHS-LHGLFNVRYLNLKR----SFTKQSI 312
Query: 296 LQGSLPD-----FPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTS 350
SLP F L L + + + G+ + L NL L L+ + TS
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF------TS 366
Query: 351 LANLTQLVYLDLSFNKFVGPIPSLHMSKN---------------LTHLDLSYNALPGAIS 395
L LT ++ L+ P+ L+++KN L LDL N + ++
Sbjct: 367 LRTLTNETFVSLAH----SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422
Query: 396 STDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSN--ASSSA 453
+W L N+ + L YN + LQL N F L+P A
Sbjct: 423 GQEWRGLENIFEIYLSYN----------------KYLQLTRNSF-ALVPSLQRLMLRRVA 465
Query: 454 LDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNL 513
L +D S P P LRNL IL LS+ + ++ L L L+L +NNL
Sbjct: 466 LKNVDSS------PSPFQ--PLRNLTILDLSN-NNIANINDDMLEGLEKLEILDLQHNNL 516
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 666 RAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLN 725
R L LD+ N +S P K+ +L VLNL+ N LS TF L L L
Sbjct: 47 RYSQLTSLDVGFNTISKLEPELCQKLP-MLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105
Query: 726 GNQLGGTVPKSLANCRNLVVLDLGNNKIRDT 756
N + +NL+ LDL +N + T
Sbjct: 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 115/301 (38%), Gaps = 44/301 (14%)
Query: 227 IHPSLA-KLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTL 285
+ P L KL L V+ L N+L + A NLT L L + + ++ L
Sbjct: 64 LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123
Query: 286 ETLDLSGNSL--------------------------LQGSLPDFPKNSSLRTLMLSNTNF 319
TLDLS N L L+ D NSSL+ L LS+
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183
Query: 320 SGVLP---DSIGNLKNLSRLDLALC-YFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLH 375
P +IG L L ++ L + LAN T + L LS ++ +
Sbjct: 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTF 242
Query: 376 MS---KNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQL 432
+ NLT LDLSYN L + + + L L Y L YN++ SL L ++ L
Sbjct: 243 LGLKWTNLTMLDLSYNNL-NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301
Query: 433 QLAEN------KFGGL--IPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILS 484
L + L I +FS L+ +++ N + G L NLK L LS
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361
Query: 485 S 485
+
Sbjct: 362 N 362
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 38/192 (19%)
Query: 301 PDFPKNSSLRTL---MLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQL 357
PD PK++++ L +L + + ++P + NL R +L DG++P L
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------L 79
Query: 358 VYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNG 417
LDLS N+ L L L LP L +D+ +N L
Sbjct: 80 GTLDLSHNQ-------------LQSLPLLGQTLPA------------LTVLDVSFNRLTS 114
Query: 418 SIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD-LR 476
G+L L LQ+L L N+ L P + L+ + L+ N L +P + + L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK-LEKLSLANNDLTE-LPAGLLNGLE 172
Query: 477 NLKILILSSNKL 488
NL L+L N L
Sbjct: 173 NLDTLLLQENSL 184
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 38/192 (19%)
Query: 301 PDFPKNSSLRTL---MLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQL 357
PD PK++++ L +L + + ++P + NL R +L DG++P L
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-------L 79
Query: 358 VYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNG 417
LDLS N+ L L L LP L +D+ +N L
Sbjct: 80 GTLDLSHNQ-------------LQSLPLLGQTLPA------------LTVLDVSFNRLTS 114
Query: 418 SIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD-LR 476
G+L L LQ+L L N+ L P + L+ + L+ N L +P + + L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK-LEKLSLANNNLTE-LPAGLLNGLE 172
Query: 477 NLKILILSSNKL 488
NL L+L N L
Sbjct: 173 NLDTLLLQENSL 184
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 14/135 (10%)
Query: 175 LSGLLQNLAELRELYLDGANISAPGIE-WCQALSSLVPKLQVLSLSSCYLSG----PIHP 229
L G+L++L+ LREL+L+ + G++ C+ L +L+ L L C L+ P+
Sbjct: 101 LPGMLRSLSTLRELHLNDNPMGDAGLKLLCEGLQDPQCRLEKLQLEYCNLTATSCEPLAS 160
Query: 230 SLAKLQSLSVIRLDQNDLLSPVPEFLADFF-----NLTSLRLSHSRLNGTFPEKILQV-- 282
L + L NDL P L L SL+L + + + + V
Sbjct: 161 VLRVKADFKELVLSNNDLHEPGVRILCQGLKDSACQLESLKLENCGITAANCKDLCDVVA 220
Query: 283 --HTLETLDLSGNSL 295
+L+ LDLS N L
Sbjct: 221 SKASLQELDLSSNKL 235
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 864 SIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAI--GNLQQLESLDLSM 921
S FT ++F++N F + + LK L L L +N L A+ N+ LE+LD+S+
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 922 NHLSGQ 927
N L+
Sbjct: 413 NSLNSH 418
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 96/238 (40%), Gaps = 68/238 (28%)
Query: 209 LVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSH 268
L P+ + LSLS S+S +R+ P FL++ L LRLSH
Sbjct: 50 LPPRTKALSLSQ--------------NSISELRM-------PDISFLSE---LRVLRLSH 85
Query: 269 SRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIG 328
+R+ L LE LD+S N L S +SLR L LS +F VLP
Sbjct: 86 NRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPM---ASLRHLDLSFNDF-DVLP---- 137
Query: 329 NLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKF----VGPIPSLHMSKNLTHLD 384
+ NLT+L +L LS KF + P+ LH+S L LD
Sbjct: 138 ------------------VCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCIL--LD 177
Query: 385 LSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGL 442
L + G T+ + N + L ++ P SLFS+ Q+ ++ N G L
Sbjct: 178 LVSYHIKGG--ETESLQIPNTTVLHLVFH------PNSLFSV----QVNMSVNALGHL 223
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 670 LLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQL 729
L LD+S N L+ +E + VLNL N L+G++ P + LDL+ N++
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK--VKVLDLHNNRI 462
Query: 730 GGTVPKSLANCRNLVVLDLGNNKIR 754
++PK + + + L L++ +N+++
Sbjct: 463 -MSIPKDVTHLQALQELNVASNQLK 486
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 400 EHLSNLVYVDLRYNSLNGSIPGSLF-SLPMLQQLQLAENKFGGLIPEFSNASSSALDTID 458
+ L+NL Y+ L N L S+P +F L L++L L EN+ L P+ + L +
Sbjct: 82 KELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLY 139
Query: 459 LSGNRLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNL 513
L N+L+ +P +FD L NL L L +N+L + +L L +L L+ N L
Sbjct: 140 LYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQSLPE-GVFDKLTQLKQLSLNDNQL 193
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 400 EHLSNLVYVDLRYNSLNGSI---PGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDT 456
EH+ +LR N+ ++ G LP L+++ + NK I E + +S ++
Sbjct: 28 EHIPQYT-AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNE 85
Query: 457 IDLSGNRLEGPIPMSIFDLRNLKILILSSNKL 488
I L+ NRLE L +LK L+L SN++
Sbjct: 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 22/173 (12%)
Query: 307 SSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTS-----LANLTQLVYLD 361
SSL L L F + + L NL L L C DG++ + L +L LV D
Sbjct: 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138
Query: 362 LSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPG 421
+ K + P + LDL++N + +I D + + LR +S+
Sbjct: 139 NNIKK-IQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSI------ 190
Query: 422 SLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFD 474
+L + + L K G F N S + T+DLSGN + + FD
Sbjct: 191 ---TLQDMNEYWLGWEKCGN---PFKNTS---ITTLDLSGNGFKESMAKRFFD 234
>pdb|3RH9|A Chain A, The Crystal Structure Of Oxidoreductase From Marinobacter
Aquaeolei
pdb|3RH9|B Chain B, The Crystal Structure Of Oxidoreductase From Marinobacter
Aquaeolei
Length = 506
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 703 NSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVV--LDLGNNKIRDTFPW- 759
+L+G + + + G T D+ G + K + VV ++ G + +R T PW
Sbjct: 10 ENLTGYIGGRWKDSAGGATFDVYNPATGSVIAKVPSXPEEDVVAAVEAGQSALRLTNPWP 69
Query: 760 ------WLENIXXXXXXXXXXNSFYGNISCRENGDSWPKLQ-IVDLASNNF 803
WLE+I G I C E+G W + Q VD A+ F
Sbjct: 70 IETRRKWLEDIRDGLKENREE---IGRILCXEHGKPWKEAQGEVDYAAGFF 117
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 403 SNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGL-IPEFSNASSSALDTIDLSG 461
SN Y++L N++ + L L+ LQL N + + F+ +S L+T++L
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS--LNTLELFD 132
Query: 462 NRLEGPIPMSIFD-LRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSD 520
N L IP F+ L L+ L L +N + ++ A R+ +L +L+L + S+
Sbjct: 133 NWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELK-KLEYISE 189
Query: 521 SSFPS--QVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQI 559
+F ++ L L C ++ +PNL L L++S N
Sbjct: 190 GAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHF 230
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 61/149 (40%), Gaps = 27/149 (18%)
Query: 408 VDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGP 467
VD R L IP +L + +++L +N +IP + + L IDLS N++
Sbjct: 16 VDCRGKGLT-EIPTNLPE--TITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISEL 71
Query: 468 IPMSIFDLRNLKILILSSNKLN-----------------------GTVQLAAIQRLHNLA 504
P + LR+L L+L NK+ +++ A Q LHNL
Sbjct: 72 APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131
Query: 505 KLELSYNNLTVNAGSDSSFPSQVRTLRLA 533
L L N L A S ++T+ LA
Sbjct: 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 61/149 (40%), Gaps = 27/149 (18%)
Query: 408 VDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGP 467
VD R L IP +L + +++L +N +IP + + L IDLS N++
Sbjct: 16 VDCRGKGLT-EIPTNLPE--TITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISEL 71
Query: 468 IPMSIFDLRNLKILILSSNKLN-----------------------GTVQLAAIQRLHNLA 504
P + LR+L L+L NK+ +++ A Q LHNL
Sbjct: 72 APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLN 131
Query: 505 KLELSYNNLTVNAGSDSSFPSQVRTLRLA 533
L L N L A S ++T+ LA
Sbjct: 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160
>pdb|3O7W|A Chain A, The Crystal Structure Of Human Leucine Carboxyl
Methyltransferase 1
Length = 294
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 47/204 (23%), Positives = 83/204 (40%), Gaps = 33/204 (16%)
Query: 241 RLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSL 300
RL DLL P F DF + + +L + IL++H+ +TL + G+
Sbjct: 91 RLKDEDLL-PSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGH------- 142
Query: 301 PDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLD--LALCYFDGSIPTSLANLTQLV 358
+L + ++ + D L++LS L+ L C + +PT L LV
Sbjct: 143 ------------ILDSKRYAVIGAD----LRDLSELEEKLKKCNMNTQLPTLLIAECVLV 186
Query: 359 YL--DLSFNKFVGPIPSLHMSKNLTHLDL----SYNALPGAISSTDWEHLSNLVYVDLRY 412
Y+ + S N S + + + + S + + S WE S + ++L Y
Sbjct: 187 YMTPEQSANLLKWAANSFERAMFINYEQVNEGKSLESQKERLLSNGWETASAVDMMEL-Y 245
Query: 413 NSLNGSIPGSLFSLPMLQQLQLAE 436
N L + + SL L +++L E
Sbjct: 246 NRLPRAEVSRIESLEFLDEMELLE 269
>pdb|3SLK|A Chain A, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
pdb|3SLK|B Chain B, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
Length = 795
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 384 DLSYNALPGAISSTDWEHLSNLVYVDL-RYNSLNGSIPGSLFSLPMLQQLQLAENKFGGL 442
DL+ AL G + ST EH V VD+ L ++PG L + QLA + G
Sbjct: 135 DLAQAALWGLLRSTQTEHPDRFVLVDVPEPAQLLPALPGVL----ACGEPQLALRRGGAH 190
Query: 443 IPEFSN-ASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLA 495
P + S L D +G RLE P S+ L + ++ +G V++A
Sbjct: 191 APRLAGLGSDDVLPVPDGTGWRLEATRPGSLDGLALVDEPTATAPLGDGEVRIA 244
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 5/191 (2%)
Query: 285 LETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFD 344
+++LDLS N + D ++L+ L+L ++ + + D+ +L +L LDL+ +
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 113
Query: 345 GSIPTSLANLTQLVYLDLSFNKF--VGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHL 402
+ L+ L YL+L N + +G NL L + I D+ L
Sbjct: 114 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 173
Query: 403 SNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSA--LDTIDLS 460
++L ++++ SL SL S+ + L L ++ L+ F++ SS L+ D +
Sbjct: 174 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 233
Query: 461 GNRLE-GPIPM 470
R + P+P+
Sbjct: 234 LARFQFSPLPV 244
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 858 ELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESL 917
E++ L TS+D SRN F P+P+ + + LNLS + + + I Q LE L
Sbjct: 407 EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVL 462
Query: 918 DLSMNHL 924
D+S N+L
Sbjct: 463 DVSNNNL 469
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 722 LDLNGNQLGGTVPKSLANCRNLVVLDLGNNKI 753
L L+GNQ VPK L+N ++L ++DL NN+I
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRI 66
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 5/191 (2%)
Query: 285 LETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFD 344
+++LDLS N + D ++L+ L+L ++ + + D+ +L +L LDL+ +
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 345 GSIPTSLANLTQLVYLDLSFNKF--VGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHL 402
+ L+ L YL+L N + +G NL L + I D+ L
Sbjct: 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147
Query: 403 SNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSA--LDTIDLS 460
++L ++++ SL SL S+ + L L ++ L+ F++ SS L+ D +
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207
Query: 461 GNRLE-GPIPM 470
R + P+P+
Sbjct: 208 LARFQFSPLPV 218
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 858 ELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESL 917
E++ L TS+D SRN F P+P+ + + LNLS + + + I Q LE L
Sbjct: 381 EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVL 436
Query: 918 DLSMNHL 924
D+S N+L
Sbjct: 437 DVSNNNL 443
>pdb|1E6D|M Chain M, Photosynthetic Reaction Center Mutant With Trp M115
Replaced With Phe (Chain M, Wm115f) Phe M197 Replaced
With Arg (Chain M, Fm197r)
Length = 307
Score = 30.0 bits (66), Expect = 7.6, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 389 ALP-GAISSTDWEHLSNLVYVDLRYNSLNG-SIP---GSLFSLPMLQQLQLAENKFGG 441
A+P G S DW + +LV+ +LRYN +G SI GS M LA ++FGG
Sbjct: 174 AVPYGIFSHLDWTNNFSLVHGNLRYNPFHGLSIAFLYGSALLFAMHGATILAVSRFGG 231
>pdb|1MPS|M Chain M, Photosynthetic Reaction Center Mutant With Phe M 197
Replaced With Arg And Tyr M 177 Replaced With Phe (Chain
M, Y177f, F197r)
Length = 307
Score = 30.0 bits (66), Expect = 7.8, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 389 ALP-GAISSTDWEHLSNLVYVDLRYNSLNG-SIP---GSLFSLPMLQQLQLAENKFGG 441
A+P G S DW + +LV+ +LRYN +G SI GS M LA ++FGG
Sbjct: 174 AVPFGIFSHLDWTNNFSLVHGNLRYNPFHGLSIAFLYGSALLFAMHGATILAVSRFGG 231
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 458 DLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLEL 508
+LS NR+ G + + NLK L LS NK+ + +++L NL L+L
Sbjct: 75 ELSENRISGDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDL 125
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 11/119 (9%)
Query: 400 EHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDL 459
+ +NL + L +N ++ P L L L++L + N+ L + S+ L + L
Sbjct: 60 QFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL----NGIPSACLSRLFL 113
Query: 460 SGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAG 518
N L S+ L+NL+IL + +NKL V L + +L L+L N +T G
Sbjct: 114 DNNELRDT--DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLE---VLDLHGNEITNTGG 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,407,711
Number of Sequences: 62578
Number of extensions: 1054791
Number of successful extensions: 3209
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 2122
Number of HSP's gapped (non-prelim): 613
length of query: 1044
length of database: 14,973,337
effective HSP length: 109
effective length of query: 935
effective length of database: 8,152,335
effective search space: 7622433225
effective search space used: 7622433225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)