Query 001612
Match_columns 1044
No_of_seqs 976 out of 6253
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 05:05:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001612.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001612hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 8.5E-69 1.9E-73 686.8 50.4 584 31-976 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.1E-54 2.4E-59 556.5 42.7 515 307-973 69-585 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 1.1E-38 2.5E-43 327.3 -12.3 430 301-803 39-470 (565)
4 KOG0472 Leucine-rich repeat pr 100.0 3.5E-38 7.6E-43 323.7 -10.5 491 211-778 45-541 (565)
5 KOG4194 Membrane glycoprotein 100.0 3.3E-35 7.1E-40 314.8 10.5 367 332-777 79-451 (873)
6 KOG4194 Membrane glycoprotein 100.0 3.8E-34 8.1E-39 306.7 8.7 364 211-581 78-447 (873)
7 KOG0618 Serine/threonine phosp 100.0 2.4E-34 5.2E-39 325.1 -2.2 506 264-946 3-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.5E-33 3.2E-38 318.8 -2.4 483 217-776 4-487 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 8.6E-32 1.9E-36 289.8 -1.5 369 99-488 4-374 (1255)
10 KOG0444 Cytoskeletal regulator 99.9 7.5E-30 1.6E-34 274.9 -1.9 363 306-753 6-374 (1255)
11 KOG4237 Extracellular matrix p 99.9 8.4E-25 1.8E-29 225.6 -2.1 420 477-946 68-498 (498)
12 KOG4237 Extracellular matrix p 99.9 4.9E-24 1.1E-28 220.0 -3.2 278 210-488 66-358 (498)
13 PLN03210 Resistant to P. syrin 99.8 5.7E-20 1.2E-24 235.7 26.5 340 492-923 549-904 (1153)
14 PLN03210 Resistant to P. syrin 99.8 7E-20 1.5E-24 234.9 27.2 316 228-558 551-880 (1153)
15 PRK15387 E3 ubiquitin-protein 99.8 9.2E-21 2E-25 224.2 17.3 54 548-611 202-255 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 2.4E-20 5.1E-25 220.7 16.9 266 429-764 203-468 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 2.4E-18 5.1E-23 205.6 18.7 357 25-441 55-446 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.4E-18 3E-23 207.6 12.6 137 600-754 180-317 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 6.1E-18 1.3E-22 188.9 1.3 135 643-778 22-178 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.1E-17 2.4E-22 186.8 2.2 186 107-295 3-205 (319)
21 KOG0617 Ras suppressor protein 99.6 1.5E-17 3.2E-22 152.6 -4.7 181 716-953 32-216 (264)
22 PLN03150 hypothetical protein; 99.6 1.8E-15 4E-20 180.9 11.8 117 865-981 419-538 (623)
23 KOG0617 Ras suppressor protein 99.5 2.2E-16 4.8E-21 144.9 -4.4 185 666-932 31-219 (264)
24 PLN03150 hypothetical protein; 99.5 2.7E-13 5.9E-18 162.3 12.9 127 28-163 367-502 (623)
25 KOG1909 Ran GTPase-activating 99.2 4.3E-12 9.4E-17 130.9 -0.4 242 98-367 26-310 (382)
26 KOG0532 Leucine-rich repeat (L 99.1 5.5E-12 1.2E-16 137.5 -2.7 56 866-923 213-271 (722)
27 KOG0532 Leucine-rich repeat (L 99.0 4.2E-11 9.1E-16 130.7 -1.1 169 624-805 80-248 (722)
28 KOG1909 Ran GTPase-activating 99.0 8.3E-11 1.8E-15 121.6 -0.1 260 121-391 24-311 (382)
29 PF08263 LRRNT_2: Leucine rich 99.0 5E-10 1.1E-14 81.9 3.9 40 32-73 2-43 (43)
30 KOG3207 Beta-tubulin folding c 99.0 1.5E-10 3.3E-15 122.8 1.4 191 327-517 142-342 (505)
31 COG4886 Leucine-rich repeat (L 98.9 1.1E-09 2.4E-14 125.8 7.8 102 672-778 97-199 (394)
32 KOG3207 Beta-tubulin folding c 98.9 1.8E-10 4E-15 122.2 -0.4 209 328-560 118-339 (505)
33 PF14580 LRR_9: Leucine-rich r 98.9 8.7E-10 1.9E-14 107.8 2.1 107 667-778 18-126 (175)
34 COG4886 Leucine-rich repeat (L 98.8 7.1E-09 1.5E-13 119.2 7.4 107 256-366 113-220 (394)
35 PF14580 LRR_9: Leucine-rich r 98.8 8.2E-09 1.8E-13 101.0 5.7 111 498-612 16-127 (175)
36 KOG4658 Apoptotic ATPase [Sign 98.7 1E-08 2.2E-13 125.6 5.5 60 103-163 546-607 (889)
37 KOG1259 Nischarin, modulator o 98.7 4.3E-09 9.4E-14 106.0 1.6 132 452-614 284-415 (490)
38 KOG4658 Apoptotic ATPase [Sign 98.7 1.4E-08 3E-13 124.4 5.8 105 211-316 545-651 (889)
39 KOG2120 SCF ubiquitin ligase, 98.7 8.5E-10 1.8E-14 111.2 -4.6 161 102-270 185-349 (419)
40 KOG1259 Nischarin, modulator o 98.7 8.7E-09 1.9E-13 103.9 2.1 128 403-562 284-414 (490)
41 KOG0531 Protein phosphatase 1, 98.6 4.8E-09 1.1E-13 120.6 -0.1 245 643-953 71-322 (414)
42 PF13855 LRR_8: Leucine rich r 98.6 2.4E-08 5.2E-13 80.1 3.2 59 694-752 2-60 (61)
43 PF13855 LRR_8: Leucine rich r 98.6 2.5E-08 5.4E-13 80.0 3.0 59 889-947 2-60 (61)
44 KOG0531 Protein phosphatase 1, 98.5 2.2E-08 4.8E-13 115.1 -0.4 270 476-808 49-322 (414)
45 KOG2120 SCF ubiquitin ligase, 98.5 7E-09 1.5E-13 104.8 -4.2 144 64-224 125-273 (419)
46 COG5238 RNA1 Ran GTPase-activa 98.3 2.3E-07 4.9E-12 92.8 1.4 168 177-344 24-227 (388)
47 KOG1859 Leucine-rich repeat pr 98.1 1.2E-07 2.5E-12 107.0 -4.5 200 306-516 83-294 (1096)
48 KOG1859 Leucine-rich repeat pr 98.1 2.9E-07 6.4E-12 103.8 -2.4 128 452-586 164-292 (1096)
49 KOG2982 Uncharacterized conser 98.0 1.3E-06 2.9E-11 88.6 0.8 62 232-293 94-156 (418)
50 KOG4579 Leucine-rich repeat (L 98.0 1.9E-07 4.2E-12 83.7 -4.7 86 865-954 54-140 (177)
51 COG5238 RNA1 Ran GTPase-activa 98.0 7.1E-06 1.5E-10 82.4 4.6 158 211-369 92-286 (388)
52 KOG4341 F-box protein containi 97.9 7.3E-07 1.6E-11 94.9 -3.0 276 103-389 139-437 (483)
53 KOG3665 ZYG-1-like serine/thre 97.9 7.5E-06 1.6E-10 98.1 4.7 145 182-348 121-267 (699)
54 PRK15386 type III secretion pr 97.7 0.00014 3.1E-09 80.1 9.6 75 664-752 48-123 (426)
55 KOG2982 Uncharacterized conser 97.6 1E-05 2.2E-10 82.3 -0.5 185 402-612 70-263 (418)
56 KOG1644 U2-associated snRNP A' 97.6 0.00014 3E-09 70.5 6.7 101 526-628 43-149 (233)
57 PF12799 LRR_4: Leucine Rich r 97.6 5.6E-05 1.2E-09 55.3 3.1 36 889-925 2-37 (44)
58 KOG4579 Leucine-rich repeat (L 97.5 8.8E-06 1.9E-10 73.3 -1.9 61 863-925 76-136 (177)
59 KOG1644 U2-associated snRNP A' 97.5 0.00011 2.4E-09 71.1 5.3 107 693-801 42-150 (233)
60 PRK15386 type III secretion pr 97.5 0.00033 7.3E-09 77.3 9.2 134 598-752 52-188 (426)
61 PF12799 LRR_4: Leucine Rich r 97.5 6.7E-05 1.5E-09 54.9 2.5 37 718-755 2-38 (44)
62 KOG4341 F-box protein containi 97.4 2E-05 4.3E-10 84.3 -1.6 230 127-367 138-384 (483)
63 KOG3665 ZYG-1-like serine/thre 97.1 0.00036 7.8E-09 84.0 4.2 153 101-266 121-282 (699)
64 PF13306 LRR_5: Leucine rich r 96.8 0.0024 5.3E-08 60.1 6.4 121 640-767 8-128 (129)
65 PF13306 LRR_5: Leucine rich r 96.8 0.0025 5.5E-08 60.0 6.3 122 230-357 7-128 (129)
66 KOG2739 Leucine-rich acidic nu 96.7 0.0015 3.3E-08 66.5 3.7 108 101-219 42-151 (260)
67 KOG1947 Leucine rich repeat pr 96.4 0.001 2.2E-08 78.9 1.0 63 233-295 241-307 (482)
68 KOG2739 Leucine-rich acidic nu 96.3 0.0021 4.5E-08 65.5 2.3 60 234-295 42-103 (260)
69 KOG1947 Leucine rich repeat pr 96.2 0.001 2.3E-08 78.9 -0.9 138 125-268 186-330 (482)
70 KOG2123 Uncharacterized conser 95.3 0.0017 3.7E-08 66.0 -2.9 87 526-616 20-106 (388)
71 PF00560 LRR_1: Leucine Rich R 95.1 0.0085 1.8E-07 36.4 0.8 19 914-933 2-20 (22)
72 KOG2123 Uncharacterized conser 94.9 0.0014 3.1E-08 66.6 -4.8 80 353-433 39-123 (388)
73 PF00560 LRR_1: Leucine Rich R 94.5 0.018 4E-07 34.9 1.2 20 866-886 2-21 (22)
74 KOG4308 LRR-containing protein 94.0 0.00071 1.5E-08 77.9 -10.9 170 176-368 108-303 (478)
75 KOG4308 LRR-containing protein 93.7 0.002 4.4E-08 74.2 -7.8 190 104-297 89-304 (478)
76 KOG0473 Leucine-rich repeat pr 91.2 0.0085 1.9E-07 59.5 -5.8 82 76-163 42-123 (326)
77 KOG0473 Leucine-rich repeat pr 87.8 0.021 4.5E-07 56.8 -6.0 84 863-949 41-124 (326)
78 PF13504 LRR_7: Leucine rich r 86.1 0.47 1E-05 26.6 1.3 14 527-540 3-16 (17)
79 KOG3864 Uncharacterized conser 83.8 0.26 5.7E-06 48.5 -0.7 41 204-244 144-185 (221)
80 smart00369 LRR_TYP Leucine-ric 80.9 1.2 2.7E-05 28.1 1.9 14 912-925 2-15 (26)
81 smart00370 LRR Leucine-rich re 80.9 1.2 2.7E-05 28.1 1.9 14 912-925 2-15 (26)
82 smart00370 LRR Leucine-rich re 78.8 1.6 3.6E-05 27.5 1.9 13 718-730 3-15 (26)
83 smart00369 LRR_TYP Leucine-ric 78.8 1.6 3.6E-05 27.5 1.9 13 718-730 3-15 (26)
84 PF13516 LRR_6: Leucine Rich r 78.2 0.54 1.2E-05 29.1 -0.5 15 741-755 2-16 (24)
85 KOG3864 Uncharacterized conser 77.4 0.26 5.6E-06 48.6 -3.1 81 405-485 103-185 (221)
86 PF13516 LRR_6: Leucine Rich r 76.1 1.2 2.5E-05 27.6 0.6 18 668-685 2-19 (24)
87 smart00365 LRR_SD22 Leucine-ri 62.2 6.2 0.00014 25.1 1.7 15 911-925 1-15 (26)
88 smart00364 LRR_BAC Leucine-ric 56.3 8 0.00017 24.5 1.4 18 525-542 2-19 (26)
89 PF04478 Mid2: Mid2 like cell 53.9 4.8 0.0001 37.8 0.3 11 1001-1011 50-60 (154)
90 PF08693 SKG6: Transmembrane a 52.0 13 0.00028 26.4 2.0 22 1001-1022 13-34 (40)
91 smart00368 LRR_RI Leucine rich 49.3 14 0.00031 23.8 1.9 20 184-203 3-22 (28)
92 KOG4242 Predicted myosin-I-bin 38.6 1.1E+02 0.0024 34.8 7.7 109 236-344 355-481 (553)
93 KOG3763 mRNA export factor TAP 37.7 24 0.00051 40.7 2.6 61 525-585 218-282 (585)
94 PF01102 Glycophorin_A: Glycop 33.9 25 0.00054 32.2 1.6 19 1002-1020 66-84 (122)
95 KOG3763 mRNA export factor TAP 33.3 25 0.00053 40.6 1.8 36 500-535 217-254 (585)
96 KOG4242 Predicted myosin-I-bin 32.6 2.5E+02 0.0055 32.1 9.3 65 547-611 214-281 (553)
97 smart00367 LRR_CC Leucine-rich 29.6 37 0.00079 21.3 1.5 11 127-137 2-12 (26)
98 TIGR00864 PCC polycystin catio 27.8 34 0.00075 47.5 2.1 33 894-926 1-33 (2740)
99 PF02439 Adeno_E3_CR2: Adenovi 27.4 51 0.0011 23.0 1.9 11 1004-1014 7-17 (38)
100 PF12606 RELT: Tumour necrosis 26.0 44 0.00096 25.1 1.5 23 1015-1037 14-36 (50)
101 PF07204 Orthoreo_P10: Orthore 24.2 51 0.0011 28.1 1.7 29 999-1027 41-69 (98)
102 PF15102 TMEM154: TMEM154 prot 24.0 54 0.0012 30.8 2.1 22 1007-1028 66-87 (146)
103 PRK10132 hypothetical protein; 23.8 66 0.0014 28.9 2.5 21 1004-1024 87-107 (108)
104 PTZ00382 Variant-specific surf 22.3 40 0.00086 29.5 0.8 18 1002-1019 68-85 (96)
105 PF15176 LRR19-TM: Leucine-ric 21.3 1.1E+02 0.0024 26.6 3.2 38 1003-1042 17-54 (102)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.5e-69 Score=686.77 Aligned_cols=584 Identities=37% Similarity=0.591 Sum_probs=379.8
Q ss_pred hHHHHHHHHHHHhcCcCCCCCccccCCCCCCCCCcccceeEeCCCCCeEEEeCCCCCccCccCCCCCcccCCCCCcccCC
Q 001612 31 QSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLA 110 (1044)
Q Consensus 31 ~~~~~~~ll~~k~~~~~~~~~~~~l~~W~~~~~~c~w~gv~C~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~LdLs 110 (1044)
.++|++||++||+++. +|. +.+++|..+.|||.|+||+|+..++|+.|+|+++.+.|.+++ ++..+++|++|||+
T Consensus 27 ~~~~~~~l~~~~~~~~-~~~--~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~--~~~~l~~L~~L~Ls 101 (968)
T PLN00113 27 HAEELELLLSFKSSIN-DPL--KYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISS--AIFRLPYIQTINLS 101 (968)
T ss_pred CHHHHHHHHHHHHhCC-CCc--ccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCCh--HHhCCCCCCEEECC
Confidence 4689999999999996 454 368899888899999999998778999999999998887643 67777778888887
Q ss_pred CCCCCCCCCCCcCC-CCCCCCEEEcCCCCCCCCCCccccCCCCCcEEecCCCCCCCCCcccCCCChhHHhhccccCceec
Q 001612 111 FNMFNATEIPSGLG-SLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELY 189 (1044)
Q Consensus 111 ~n~~~~~~lp~~l~-~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~l~~~l~~l~~L~~L~ 189 (1044)
+|.+.+. +|..+. .+++|++|+|++|.+++.+|. +.+
T Consensus 102 ~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l--------------------------------------- 139 (968)
T PLN00113 102 NNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI--------------------------------------- 139 (968)
T ss_pred CCccCCc-CChHHhccCCCCCEEECcCCccccccCc--ccc---------------------------------------
Confidence 7777665 666544 777777777777777666653 222
Q ss_pred CCCccCCCchhhhHHHHhccCCCceEEecCCCCCCCCCcccccCCCCCCEEECCCCCCCCCChHhhhCCCCCcEEEccCC
Q 001612 190 LDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHS 269 (1044)
Q Consensus 190 l~~~~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n 269 (1044)
++|++|++++|.+.+..|..++++++|++|++++|.+.+.+|..++++++|++|++++|
T Consensus 140 ---------------------~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 198 (968)
T PLN00113 140 ---------------------PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198 (968)
T ss_pred ---------------------CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC
Confidence 34444444455555556666666777777777777666666666666666666666666
Q ss_pred CCCCCcChhhcCCCCCCEEECCCCCCCCCCCCCCCCCCCCcEEEccCCcCCccCcccccCCCCCCEEeccCccCCCCCch
Q 001612 270 RLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPT 349 (1044)
Q Consensus 270 ~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 349 (1044)
.+.+.+|..++++++|++|++++| .+++.+|..++++++|++|++++|.+.+.+|.
T Consensus 199 ~l~~~~p~~l~~l~~L~~L~L~~n------------------------~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 254 (968)
T PLN00113 199 QLVGQIPRELGQMKSLKWIYLGYN------------------------NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254 (968)
T ss_pred CCcCcCChHHcCcCCccEEECcCC------------------------ccCCcCChhHhcCCCCCEEECcCceeccccCh
Confidence 666666655555544444444433 33445555555666666666666665555555
Q ss_pred hhcCCCCCcEEeCcCCcccCCCCcccCCCcccEEEccCCCCCCCCCchhhhcCCCccEEEeecCcCCCCCCcccCCCccc
Q 001612 350 SLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPML 429 (1044)
Q Consensus 350 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 429 (1044)
.++++++|++|++++|.+.+. +|.. +.++++|++|++++|.+.+.+|..+..+++|
T Consensus 255 ~l~~l~~L~~L~L~~n~l~~~-----------------------~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 310 (968)
T PLN00113 255 SLGNLKNLQYLFLYQNKLSGP-----------------------IPPS-IFSLQKLISLDLSDNSLSGEIPELVIQLQNL 310 (968)
T ss_pred hHhCCCCCCEEECcCCeeecc-----------------------Cchh-HhhccCcCEEECcCCeeccCCChhHcCCCCC
Confidence 555555555555555544332 2222 3444445555555544444444444333333
Q ss_pred ceeecCCcccCCCCCcccccCCCCCCEEEcCCCcCCCCCCchhhcCCCccEEEecCCcccCccchHHHHhCCCCCeEeCC
Q 001612 430 QQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELS 509 (1044)
Q Consensus 430 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 509 (1044)
+.|++++ |.+.+..|..+..+++|+.|++++|.+.+.+|..
T Consensus 311 ~~L~l~~-------------------------n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-------------- 351 (968)
T PLN00113 311 EILHLFS-------------------------NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN-------------- 351 (968)
T ss_pred cEEECCC-------------------------CccCCcCChhHhcCCCCCEEECcCCCCcCcCChH--------------
Confidence 3333332 2333333333444444444444444433222211
Q ss_pred CceeeeecCCCCCCCccccEEEccCCCCcCCCCccCCCCCcEEECCCCcCCCCCChhHhhhcccccceeecccccccCcc
Q 001612 510 YNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQ 589 (1044)
Q Consensus 510 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l~ 589 (1044)
+..+++|+.|++++|++.+.+|
T Consensus 352 ---------------------------------l~~~~~L~~L~Ls~n~l~~~~p------------------------- 373 (968)
T PLN00113 352 ---------------------------------LGKHNNLTVLDLSTNNLTGEIP------------------------- 373 (968)
T ss_pred ---------------------------------HhCCCCCcEEECCCCeeEeeCC-------------------------
Confidence 1112223333333333333222
Q ss_pred CCcccCCCCCCceEEcCCCcccCCCCCCCCCCcEEEccCCcCCcCCChhhhhccccceEEeccCCcccCcCccchhccCC
Q 001612 590 RPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKY 669 (1044)
Q Consensus 590 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~ 669 (1044)
..++.+++
T Consensus 374 ------------------------------------------------------------------------~~~~~~~~ 381 (968)
T PLN00113 374 ------------------------------------------------------------------------EGLCSSGN 381 (968)
T ss_pred ------------------------------------------------------------------------hhHhCcCC
Confidence 23333344
Q ss_pred CcEEEccCCcccccCChhHhhcccccceEECCCCcCcCccCCCCCCCCCccEEeCCCCCCcccCcccccCCCCCcEEECC
Q 001612 670 LLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLG 749 (1044)
Q Consensus 670 L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 749 (1044)
|+.|++++|++.+.+|..+..+ ++|+.|++++|++++.+|..|..+++|+.|++++|.+++.+|..+..+++|+.|+++
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 460 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGAC-RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460 (968)
T ss_pred CCEEECcCCEecccCCHHHhCC-CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECc
Confidence 4444445555444455444443 455555555555555555555666667777777777777777666677777777777
Q ss_pred CCccccCCChhhhcCCCCcEEEccCCccccCCCCCCCCCCCCcccEEEcCCCcCCCcCChhhHhhhhhcccchhhhcccc
Q 001612 750 NNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNF 829 (1044)
Q Consensus 750 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~ 829 (1044)
+|++.+.+|..++ .+ +|+.||+++|+++|.+|...
T Consensus 461 ~n~~~~~~p~~~~-~~--------------------------~L~~L~ls~n~l~~~~~~~~------------------ 495 (968)
T PLN00113 461 RNKFFGGLPDSFG-SK--------------------------RLENLDLSRNQFSGAVPRKL------------------ 495 (968)
T ss_pred CceeeeecCcccc-cc--------------------------cceEEECcCCccCCccChhh------------------
Confidence 7777766664432 22 34445555555555555321
Q ss_pred cccccccccccccccccceEEeecCchhhHhhhcCcceEEEccCCcccccCCcccCCCCCCCEEeCCCCCCcCCCccccc
Q 001612 830 KDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIG 909 (1044)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~ip~~~~ 909 (1044)
..++.|+.|||++|+++|.+|.+++++++|++|+|++|.++|.+|..++
T Consensus 496 -------------------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 544 (968)
T PLN00113 496 -------------------------------GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544 (968)
T ss_pred -------------------------------hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh
Confidence 1255677888899999999999999999999999999999999999999
Q ss_pred CcCCCCEEeCCCCccccccCccccCCCCCcEEECcCCcccccCCCcccccccccccccCCCCCCCCC
Q 001612 910 NLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQSFLATSFEGNKGLCGPP 976 (1044)
Q Consensus 910 ~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~n~~lcg~~ 976 (1044)
++++|+.|||++|+++|.+|..+.++++|+++++++|+++|.+|...++.++...++.||+++||++
T Consensus 545 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-54 Score=556.53 Aligned_cols=515 Identities=36% Similarity=0.503 Sum_probs=384.1
Q ss_pred CCCcEEEccCCcCCccCcccccCCCCCCEEeccCccCCCCCchhhc-CCCCCcEEeCcCCcccCCCCcccCCCcccEEEc
Q 001612 307 SSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLA-NLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDL 385 (1044)
Q Consensus 307 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L 385 (1044)
.+++.|++++|.+++.++..+..+++|+.|++++|.+.+.+|..+. .+++|++|++++|.+++.+|. ...++|++|++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~L 147 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDL 147 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEEC
Confidence 4577788888888888888888888888888888888877777654 888888888888888776664 23467777777
Q ss_pred cCCCCCCCCCchhhhcCCCccEEEeecCcCCCCCCcccCCCcccceeecCCcccCCCCCcccccCCCCCCEEEcCCCcCC
Q 001612 386 SYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLE 465 (1044)
Q Consensus 386 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~ 465 (1044)
++|.+.+.+|.. ++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|.... .+.+|++|++++|.++
T Consensus 148 s~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 148 SNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYNNLS 225 (968)
T ss_pred cCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc-CcCCccEEECcCCccC
Confidence 777777666665 77777777777777777777777777777777776666666555443222 2445555555555555
Q ss_pred CCCCchhhcCCCccEEEecCCcccCccchHHHHhCCCCCeEeCCCceeeeecCCCCCCCccccEEEccCCCCcCCCCccC
Q 001612 466 GPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKN 545 (1044)
Q Consensus 466 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~ 545 (1044)
+.+|..+.++++|++|++++|.+.+.+|.. +.+
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-----------------------------------------------l~~ 258 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-----------------------------------------------LGN 258 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceeccccChh-----------------------------------------------HhC
Confidence 555555555555555555555554433322 334
Q ss_pred CCCCcEEECCCCcCCCCCChhHhhhcccccceeecccccccCccCCcccCCCCCCceEEcCCCcccCCCCCCCCCCcEEE
Q 001612 546 QSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVD 625 (1044)
Q Consensus 546 l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~ 625 (1044)
+++|+.|++++|.+.+.+|..+..+ ++|++|++++|.+.+.+
T Consensus 259 l~~L~~L~L~~n~l~~~~p~~l~~l---------------------------~~L~~L~Ls~n~l~~~~----------- 300 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGPIPPSIFSL---------------------------QKLISLDLSDNSLSGEI----------- 300 (968)
T ss_pred CCCCCEEECcCCeeeccCchhHhhc---------------------------cCcCEEECcCCeeccCC-----------
Confidence 4455555555555555555444332 23444444444433322
Q ss_pred ccCCcCCcCCChhhhhccccceEEeccCCcccCcCccchhccCCCcEEEccCCcccccCChhHhhcccccceEECCCCcC
Q 001612 626 YSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSL 705 (1044)
Q Consensus 626 ls~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l 705 (1044)
|..+. .+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..+..+ ++|+.|++++|++
T Consensus 301 ----------p~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~-~~L~~L~Ls~n~l 368 (968)
T PLN00113 301 ----------PELVI-QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDLSTNNL 368 (968)
T ss_pred ----------ChhHc-CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC-CCCcEEECCCCee
Confidence 22222 24556666666666666677777778888888888888888888877776 7888888888888
Q ss_pred cCccCCCCCCCCCccEEeCCCCCCcccCcccccCCCCCcEEECCCCccccCCChhhhcCCCCcEEEccCCccccCCCCCC
Q 001612 706 SGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRE 785 (1044)
Q Consensus 706 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i~~~~ 785 (1044)
++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+.++++|+.|++++|.+.|.+ +.
T Consensus 369 ~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--~~ 446 (968)
T PLN00113 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI--NS 446 (968)
T ss_pred EeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc--Ch
Confidence 8888888888888888999999888888888888899999999999998888888888999999999999988877 66
Q ss_pred CCCCCCcccEEEcCCCcCCCcCChhhHhhhhhcccchhhhcccccccccccccccccccccceEEeecCchhhHhhhcCc
Q 001612 786 NGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSI 865 (1044)
Q Consensus 786 ~~~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 865 (1044)
.+..+++|+.|++++|++.|.+|... ..+.
T Consensus 447 ~~~~l~~L~~L~L~~n~~~~~~p~~~--------------------------------------------------~~~~ 476 (968)
T PLN00113 447 RKWDMPSLQMLSLARNKFFGGLPDSF--------------------------------------------------GSKR 476 (968)
T ss_pred hhccCCCCcEEECcCceeeeecCccc--------------------------------------------------cccc
Confidence 67788899999999999988887421 1356
Q ss_pred ceEEEccCCcccccCCcccCCCCCCCEEeCCCCCCcCCCcccccCcCCCCEEeCCCCccccccCccccCCCCCcEEECcC
Q 001612 866 FTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSH 945 (1044)
Q Consensus 866 l~~LdLs~N~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~ 945 (1044)
|+.||+++|+++|.+|..++++++|+.|+|++|+++|.+|..++++++|++|+|++|+++|.+|..++++++|+.|++++
T Consensus 477 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 556 (968)
T PLN00113 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQ 556 (968)
T ss_pred ceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCcc-cccccccccccCCCCCC
Q 001612 946 NNLVGKIPIST-QLQSFLATSFEGNKGLC 973 (1044)
Q Consensus 946 N~l~g~ip~~~-~~~~~~~~~~~~n~~lc 973 (1044)
|+++|.+|... .+..+....+.+|+..+
T Consensus 557 N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 557 NQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred CcccccCChhHhcCcccCEEeccCCccee
Confidence 99999999752 23344555666776443
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.1e-38 Score=327.27 Aligned_cols=430 Identities=23% Similarity=0.312 Sum_probs=258.7
Q ss_pred CCCCCCCCCcEEEccCCcCCccCcccccCCCCCCEEeccCccCCCCCchhhcCCCCCcEEeCcCCcccCCCCcccCCCcc
Q 001612 301 PDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNL 380 (1044)
Q Consensus 301 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L 380 (1044)
..+..-..|+.+.+++|.+. .+.+.+.++..|.+|++.+|++. ..|.+++.+..++.++.++|++...++......++
T Consensus 39 e~wW~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l 116 (565)
T KOG0472|consen 39 ENWWEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISL 116 (565)
T ss_pred hhhhhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhh
Confidence 33444556667777777766 33445677778888888888777 56777777888888888888877666666666777
Q ss_pred cEEEccCCCCCCCCCchhhhcCCCccEEEeecCcCCCCCCcccCCCcccceeecCCcccCCCCCcccccCCCCCCEEEcC
Q 001612 381 THLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLS 460 (1044)
Q Consensus 381 ~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls 460 (1044)
..++.++|.+. +++++ ++.+..|+.++..+|+++ ..|+.+.++.+|..+++.+|++....|+... ...|+++|..
T Consensus 117 ~~l~~s~n~~~-el~~~-i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~--m~~L~~ld~~ 191 (565)
T KOG0472|consen 117 VKLDCSSNELK-ELPDS-IGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA--MKRLKHLDCN 191 (565)
T ss_pred hhhhcccccee-ecCch-HHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH--HHHHHhcccc
Confidence 77788777776 55555 778888888888888887 6777888888888888888888876665544 5678888888
Q ss_pred CCcCCCCCCchhhcCCCccEEEecCCcccCccchHHHHhCCCCCeEeCCCceeeeecCCCCCCCccccEEEccCCCCcCC
Q 001612 461 GNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVI 540 (1044)
Q Consensus 461 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~l 540 (1044)
.|.++ .+|..++.+.+|+.|++..|++. .+| .|.+|..|+++++..|.+..++.......+++..|++..|+++++
T Consensus 192 ~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~ 267 (565)
T KOG0472|consen 192 SNLLE-TLPPELGGLESLELLYLRRNKIR-FLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEV 267 (565)
T ss_pred hhhhh-cCChhhcchhhhHHHHhhhcccc-cCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccC
Confidence 87776 78888888888888888888886 555 377777777777777777666655555555555666666666655
Q ss_pred CC-ccCCCCCcEEECCCCcCCCCCChhHhhhcccccceeecccccccCccCCccc-CCCCCCceEEcCCCcccCCCCCCC
Q 001612 541 PN-LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSI-SDLSPITVLDLHSNQLQGNIPYPP 618 (1044)
Q Consensus 541 ~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~ 618 (1044)
|. +.-+.+|..||+|+|.|+ .+|..++.+ +|+.|-+.+|.+..+.....- +.-.-|++|.= .+...-
T Consensus 268 Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl---hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs---~~~~dg---- 336 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNNDIS-SLPYSLGNL---HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS---KIKDDG---- 336 (565)
T ss_pred chHHHHhhhhhhhcccCCccc-cCCcccccc---eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH---hhccCC----
Confidence 55 445555555555555555 334333333 244444444444433111000 00000111100 000000
Q ss_pred CCCcEEEccCCcCCcCCChhhhhccccceEEeccCCcccCcCccchhccCCCcEEEccCCcccccCChhHhhcccccceE
Q 001612 619 PKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVL 698 (1044)
Q Consensus 619 ~~l~~l~ls~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L 698 (1044)
++.. .|. .-..-+ ...+ .........+.+.|+++.-+++ .+|+..+...+
T Consensus 337 -------lS~s--e~~----------~e~~~t----~~~~-~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~----- 386 (565)
T KOG0472|consen 337 -------LSQS--EGG----------TETAMT----LPSE-SFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAK----- 386 (565)
T ss_pred -------CCCC--ccc----------ccccCC----CCCC-cccchhhhhhhhhhcccccccc-cCCHHHHHHhh-----
Confidence 0000 000 000000 0000 1111223445667777777777 67776665421
Q ss_pred ECCCCcCcCccCCCCCCCCCccEEeCCCCCCcccCcccccCCCCCcEEECCCCccccCCChhhhcCCCCcEEEccCCccc
Q 001612 699 NLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFY 778 (1044)
Q Consensus 699 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 778 (1044)
-.-.+..++++|++. .+|..+..++.+.+.-+..|+..+.+|..+..+++|..|+|++|.+.
T Consensus 387 -----------------~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln 448 (565)
T KOG0472|consen 387 -----------------SEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN 448 (565)
T ss_pred -----------------hcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh
Confidence 112456666777766 66777766666555444444444566777777777777777777664
Q ss_pred cCCCCCCCCCCCCcccEEEcCCCcC
Q 001612 779 GNISCRENGDSWPKLQIVDLASNNF 803 (1044)
Q Consensus 779 g~i~~~~~~~~l~~L~~Ldls~N~l 803 (1044)
.. |..++.+..|+.||+|.|+|
T Consensus 449 ~L---P~e~~~lv~Lq~LnlS~NrF 470 (565)
T KOG0472|consen 449 DL---PEEMGSLVRLQTLNLSFNRF 470 (565)
T ss_pred hc---chhhhhhhhhheeccccccc
Confidence 32 55555555555556655555
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.5e-38 Score=323.67 Aligned_cols=491 Identities=29% Similarity=0.375 Sum_probs=275.3
Q ss_pred CCceEEecCCCCCCCCCcccccCCCCCCEEECCCCCCCCCChHhhhCCCCCcEEEccCCCCCCCcChhhcCCCCCCEEEC
Q 001612 211 PKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDL 290 (1044)
Q Consensus 211 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 290 (1044)
..++.+++++|.+... .+.+.++..|.+|++++|++.. .|.+++.+..++.|+.++|+++ .+|+.++.+.+|+.++.
T Consensus 45 v~l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchhhc-cHhhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 4677888888877643 3457788888888888887754 4566788888888888888887 77888888888888777
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEccCCcCCccCcccccCCCCCCEEeccCccCCCCCchhhcCCCCCcEEeCcCCcccCC
Q 001612 291 SGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGP 370 (1044)
Q Consensus 291 s~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 370 (1044)
++|...+ -.+++..+..|+.++..+|+++ ..|+.+.++.+|..+++.+|++....|. .-+++.|++||.-.|-+...
T Consensus 122 s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N~L~tl 198 (565)
T KOG0472|consen 122 SSNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSNLLETL 198 (565)
T ss_pred cccceee-cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchhhhhcC
Confidence 7776533 2233444555555555555555 3455555555555555555555533222 22255555555555555544
Q ss_pred CCcccCCCcccEEEccCCCCCCCCCchhhhcCCCccEEEeecCcCCCCCCcccC-CCcccceeecCCcccCCCCCccccc
Q 001612 371 IPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLF-SLPMLQQLQLAENKFGGLIPEFSNA 449 (1044)
Q Consensus 371 ~~~~~~~~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~ 449 (1044)
+|...++.+|+.|++.+|++. .+|+ |..|..|+++.++.|++. .+|.+.. +++++..||+.+|++...+.+...
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~cl- 273 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL- 273 (565)
T ss_pred ChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHH-
Confidence 444555555555555555554 3442 555555555555555554 3333332 455555555555555443332221
Q ss_pred CCCCCCEEEcCCCcCCCCCCchhhcCCCccEEEecCCcccCccchHHHHh-----CCCCCeEeCCCceeeeecCCCCCCC
Q 001612 450 SSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQR-----LHNLAKLELSYNNLTVNAGSDSSFP 524 (1044)
Q Consensus 450 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~~~~~ 524 (1044)
+.+|+.||+++|.++ .+|.+++++ .|+.|.+.+|.+. .+..+.+.. ++.|+. .+..-.++.-.+....-+
T Consensus 274 -LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs-~~~~dglS~se~~~e~~~ 348 (565)
T KOG0472|consen 274 -LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRS-KIKDDGLSQSEGGTETAM 348 (565)
T ss_pred -hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHH-hhccCCCCCCcccccccC
Confidence 334555555555555 344455555 5555555555443 221111110 000000 000000000000000000
Q ss_pred ccccEEEccCCCCcCCCCccCCCCCcEEECCCCcCCCCCChhHhhhcccccceeecccccccCccCCcccCCCCCCceEE
Q 001612 525 SQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLD 604 (1044)
Q Consensus 525 ~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~ 604 (1044)
+. .-..+|......+.+.|++++-+++ .+|+..|..... .-...++
T Consensus 349 ------t~---~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~------------------------~~Vt~Vn 394 (565)
T KOG0472|consen 349 ------TL---PSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKS------------------------EIVTSVN 394 (565)
T ss_pred ------CC---CCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhh------------------------cceEEEe
Confidence 00 0001223444556777777777776 667766654321 1133444
Q ss_pred cCCCcccCCCCCCCCCCcEEEccCCcCCcCCChhhhhccccceEEeccCCcccCcCccchhccCCCcEEEccCCcccccC
Q 001612 605 LHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKM 684 (1044)
Q Consensus 605 l~~n~l~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~i 684 (1044)
++.|++. ++|..+...-...+.+.+++|.+ +.+|..++.+++|..|+|++|.+. .+
T Consensus 395 fskNqL~----------------------elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~L 450 (565)
T KOG0472|consen 395 FSKNQLC----------------------ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DL 450 (565)
T ss_pred cccchHh----------------------hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hc
Confidence 4444443 44554443222333344444444 467777888888888888888776 78
Q ss_pred ChhHhhcccccceEECCCCcCcCccCCCCCCCCCccEEeCCCCCCcccCcccccCCCCCcEEECCCCccccCCChhhhcC
Q 001612 685 PTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENI 764 (1044)
Q Consensus 685 p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 764 (1044)
|..++.+ ..|+.||++.|++. ..|.....+..++.+-.++|++....|..+.++.+|.+||+.+|.+. .+|..++++
T Consensus 451 P~e~~~l-v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnm 527 (565)
T KOG0472|consen 451 PEEMGSL-VRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNM 527 (565)
T ss_pred chhhhhh-hhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccc
Confidence 8877776 56777777777665 44555555566666667777777666666777777778888777775 455567777
Q ss_pred CCCcEEEccCCccc
Q 001612 765 SSLRVLVLRSNSFY 778 (1044)
Q Consensus 765 ~~L~~L~L~~N~l~ 778 (1044)
++|++|++.+|+|.
T Consensus 528 tnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 528 TNLRHLELDGNPFR 541 (565)
T ss_pred cceeEEEecCCccC
Confidence 77777777777665
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-35 Score=314.81 Aligned_cols=367 Identities=26% Similarity=0.319 Sum_probs=263.1
Q ss_pred CCCEEeccCccCCCCCchhhcCCCCCcEEeCcCCcccCCCCcccCC-CcccEEEccCCCCCCCCCchhhhcCCCccEEEe
Q 001612 332 NLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMS-KNLTHLDLSYNALPGAISSTDWEHLSNLVYVDL 410 (1044)
Q Consensus 332 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L 410 (1044)
.-+.||+++|.+....+..|.++++|+++++..|.++ .+|.+... .+|+.|+|.+|.++ ++..+.++.++.|+.|||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhh
Confidence 3456888888888878888888888888888888876 45555544 55777777777776 455555777788888888
Q ss_pred ecCcCCCCCCcccCCCcccceeecCCcccCCCCCcccccCCCCCCEEEcCCCcCCCCCCchhhcCCCccEEEecCCcccC
Q 001612 411 RYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNG 490 (1044)
Q Consensus 411 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 490 (1044)
+.|.++...-..|..-.++++|+| ++|.|+..-...|.++.+|..|.|+.|+++
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~L-------------------------a~N~It~l~~~~F~~lnsL~tlkLsrNrit- 210 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNL-------------------------ASNRITTLETGHFDSLNSLLTLKLSRNRIT- 210 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEee-------------------------ccccccccccccccccchheeeecccCccc-
Confidence 888777544444444444555544 444444444455667777777888888877
Q ss_pred ccchHHHHhCCCCCeEeCCCceeeeecCCCCCCCccccEEEccCCCCcCCCC--ccCCCCCcEEECCCCcCCCCCChhHh
Q 001612 491 TVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVW 568 (1044)
Q Consensus 491 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~l~~--l~~l~~L~~L~Ls~n~l~~~~p~~~~ 568 (1044)
.+|...|.++++|+.|+|..|+|..+....|...++|+.|.+..|.+..+.+ |..+.++++|+|+.|+++..-..|++
T Consensus 211 tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf 290 (873)
T KOG4194|consen 211 TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF 290 (873)
T ss_pred ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc
Confidence 7777778888888888888888877777777777777777777777777665 77777888888888877755555554
Q ss_pred hhcccccceeecccccccCccCCcccCCCCCCceEEcCCCcccCCCCCCCCCCcEEEccCCcCCcCCChhhhhccccceE
Q 001612 569 EIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLF 648 (1044)
Q Consensus 569 ~~~~~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~L~~ 648 (1044)
.+.. |+.|++|+|.|..+. ..-..+++.|++
T Consensus 291 gLt~--L~~L~lS~NaI~rih-----------------------------------------------~d~WsftqkL~~ 321 (873)
T KOG4194|consen 291 GLTS--LEQLDLSYNAIQRIH-----------------------------------------------IDSWSFTQKLKE 321 (873)
T ss_pred ccch--hhhhccchhhhheee-----------------------------------------------cchhhhccccee
Confidence 4432 444444444333321 111234677888
Q ss_pred EeccCCcccCcCccchhccCCCcEEEccCCcccccCChhHhhcccccceEECCCCcCcCccCC---CCCCCCCccEEeCC
Q 001612 649 FSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSV---TFPGNCGLHTLDLN 725 (1044)
Q Consensus 649 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls 725 (1044)
|+|++|+++...+.+|..+..|++|.|++|+++ .+.+..+.+.++|++|||++|.+++.+.+ .|.++++|+.|+|.
T Consensus 322 LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~ 400 (873)
T KOG4194|consen 322 LDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLT 400 (873)
T ss_pred EeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeec
Confidence 888888888888888888888888888888887 56665555568888888888888877654 37778888888888
Q ss_pred CCCCcccCcccccCCCCCcEEECCCCccccCCChhhhcCCCCcEEEccCCcc
Q 001612 726 GNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSF 777 (1044)
Q Consensus 726 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l 777 (1044)
+|++..+...+|.++..|+.|||.+|.+..+-|..|..+ .|+.|.+..-.|
T Consensus 401 gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 401 GNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred CceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 888886666788888888888888888888888888877 777777765443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-34 Score=306.70 Aligned_cols=364 Identities=26% Similarity=0.310 Sum_probs=314.0
Q ss_pred CCceEEecCCCCCCCCCcccccCCCCCCEEECCCCCCCCCChHhhhCCCCCcEEEccCCCCCCCcChhhcCCCCCCEEEC
Q 001612 211 PKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDL 290 (1044)
Q Consensus 211 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 290 (1044)
+.-+.||+++|++...-+..|.++++|+++++..|.++ .+|...+...+|+.|+|.+|.|+..-.+++..++.|++|||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 56678999999999888888999999999999988775 46776666777999999999998777788899999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEccCCcCCccCcccccCCCCCCEEeccCccCCCCCchhhcCCCCCcEEeCcCCcccCC
Q 001612 291 SGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGP 370 (1044)
Q Consensus 291 s~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 370 (1044)
+.|.+.+...+.|..-.++++|+|++|+|+..-...|..+.+|.+|.|++|+++...+..|.++++|+.|+|..|++.-.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 99999999999999989999999999999988888899999999999999999977778899999999999999988643
Q ss_pred -CCcccCCCcccEEEccCCCCCCCCCchhhhcCCCccEEEeecCcCCCCCCcccCCCcccceeecCCcccCCCCCccccc
Q 001612 371 -IPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNA 449 (1044)
Q Consensus 371 -~~~~~~~~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 449 (1044)
.-.+.++++|+.|.+..|.+. .+.+..|..+.++++|+|+.|+++..-.+++.++++|+.|++++|.+...-++. ..
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~-Ws 314 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS-WS 314 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch-hh
Confidence 334566689999999999987 566667999999999999999999888889999999999999999988654432 22
Q ss_pred CCCCCCEEEcCCCcCCCCCCchhhcCCCccEEEecCCcccCccchHHHHhCCCCCeEeCCCceeeeecCC---CCCCCcc
Q 001612 450 SSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGS---DSSFPSQ 526 (1044)
Q Consensus 450 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~ 526 (1044)
.+++|++|+++.|+++..-+..|..+..|++|+|++|.+. .+...+|..+++|++|||+.|.+...... .+...++
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~ 393 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPS 393 (873)
T ss_pred hcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchh
Confidence 4789999999999999888889999999999999999998 78888999999999999999998743322 2556789
Q ss_pred ccEEEccCCCCcCCCC--ccCCCCCcEEECCCCcCCCCCChhHhhhcccccceeecc
Q 001612 527 VRTLRLASCKLRVIPN--LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLS 581 (1044)
Q Consensus 527 L~~L~L~~n~l~~l~~--l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls 581 (1044)
|+.|.+.+|++..+|. +..+..|++|||.+|.|...-|+.|..+ .|++|.+.
T Consensus 394 LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m---~Lk~Lv~n 447 (873)
T KOG4194|consen 394 LRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM---ELKELVMN 447 (873)
T ss_pred hhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc---hhhhhhhc
Confidence 9999999999999997 9999999999999999998888877665 36666543
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=2.4e-34 Score=325.12 Aligned_cols=506 Identities=28% Similarity=0.384 Sum_probs=305.6
Q ss_pred EEccCCCCCCCcChhhcCCCCCCEEECCCCCCCCCCCCCCCCCCCCcEEEccCCcCCccCcccccCCCCCCEEeccCccC
Q 001612 264 LRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYF 343 (1044)
Q Consensus 264 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 343 (1044)
++++.+.+. .+|..+..-..++.|+++.|.....+.+...+.-+|+.|++++|++. ..|..+..+.+|+.|+++.|.+
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence 455555555 56666655555777777777665555444444555777777777766 4566667777777777777777
Q ss_pred CCCCchhhcCCCCCcEEeCcCCcccCCCCcccCCCcccEEEccCCCCCCCCCchhhhcCCCccEEEeecCcCCCCCCccc
Q 001612 344 DGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSL 423 (1044)
Q Consensus 344 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 423 (1044)
. ..|.+..++.+|+++.|.+|.+. ..|.. +..+++|++|+++.|.+. .+|..+
T Consensus 81 ~-~vp~s~~~~~~l~~lnL~~n~l~------------------------~lP~~-~~~lknl~~LdlS~N~f~-~~Pl~i 133 (1081)
T KOG0618|consen 81 R-SVPSSCSNMRNLQYLNLKNNRLQ------------------------SLPAS-ISELKNLQYLDLSFNHFG-PIPLVI 133 (1081)
T ss_pred h-hCchhhhhhhcchhheeccchhh------------------------cCchh-HHhhhcccccccchhccC-CCchhH
Confidence 6 55666777777777777766655 33333 555666666666666655 455556
Q ss_pred CCCcccceeecCCcccCCCCCcccccCCCCCCEEEcCCCcCCCCCCchhhcCCCccEEEecCCcccCccchHHHHhCCCC
Q 001612 424 FSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNL 503 (1044)
Q Consensus 424 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 503 (1044)
..++.+..+..++|......+. ..++.+++..|.+.+.++..+..+.. .|+|++|.+. .. .+..+.+|
T Consensus 134 ~~lt~~~~~~~s~N~~~~~lg~------~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~---dls~~~~l 201 (1081)
T KOG0618|consen 134 EVLTAEEELAASNNEKIQRLGQ------TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL---DLSNLANL 201 (1081)
T ss_pred HhhhHHHHHhhhcchhhhhhcc------ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh---hhhhccch
Confidence 6666666666666622111111 12666777777777777777776665 6888888875 22 36677888
Q ss_pred CeEeCCCceeeeecCCCCCCCccccEEEccCCCCcCCCCccCCCCCcEEECCCCcCCCCCChhHhhhcccccceeecccc
Q 001612 504 AKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHN 583 (1044)
Q Consensus 504 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N 583 (1044)
+.+....|++..+.... ++++.|+..+|.++.+..-..-.+|+.+|++.|+++ .+|+|+..+
T Consensus 202 ~~l~c~rn~ls~l~~~g----~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~------------- 263 (1081)
T KOG0618|consen 202 EVLHCERNQLSELEISG----PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGAC------------- 263 (1081)
T ss_pred hhhhhhhcccceEEecC----cchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhc-------------
Confidence 88888888776544321 256666666666653332223345666666666666 445665554
Q ss_pred cccCccCCcccCCCCCCceEEcCCCcccCCCCCCCCCCcEEEccCCcCCcCCChhhhhccccceEEeccCCcccCcCccc
Q 001612 584 LLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPET 663 (1044)
Q Consensus 584 ~l~~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~ 663 (1044)
.+|+.++..+|+++ .+|..+.. ..+|+.+.+..|.+. .+|..
T Consensus 264 --------------~nle~l~~n~N~l~----------------------~lp~ri~~-~~~L~~l~~~~nel~-yip~~ 305 (1081)
T KOG0618|consen 264 --------------ANLEALNANHNRLV----------------------ALPLRISR-ITSLVSLSAAYNELE-YIPPF 305 (1081)
T ss_pred --------------ccceEecccchhHH----------------------hhHHHHhh-hhhHHHHHhhhhhhh-hCCCc
Confidence 34444444444442 23333332 455555556666655 45555
Q ss_pred hhccCCCcEEEccCCcccccCChhHhhccc-ccceEECCCCcCcCccCCCCCCCCCccEEeCCCCCCcccCcccccCCCC
Q 001612 664 LCRAKYLLVLDLSKNKLSGKMPTCLIKMSE-ILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRN 742 (1044)
Q Consensus 664 l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 742 (1044)
....++|+.|||..|++. ..|+.+..... +|+.|+.+.|++.......=...+.|+.|++.+|.++...-..+.+...
T Consensus 306 le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h 384 (1081)
T KOG0618|consen 306 LEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKH 384 (1081)
T ss_pred ccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccc
Confidence 666777888888888886 66665544332 3666777777766544222233456777777777777666556667777
Q ss_pred CcEEECCCCccccCCChhhhcCCCCcEEEccCCccccCCCCCCCCCCCCcccEEEcCCCcCCCcCChhhHhhhhhcccch
Q 001612 743 LVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDE 822 (1044)
Q Consensus 743 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~ 822 (1044)
|++|+|++|++.......+.++..|+.|+|++|+++. +|. +..
T Consensus 385 LKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~---------------------------Lp~-tva--------- 427 (1081)
T KOG0618|consen 385 LKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT---------------------------LPD-TVA--------- 427 (1081)
T ss_pred eeeeeecccccccCCHHHHhchHHhHHHhcccchhhh---------------------------hhH-HHH---------
Confidence 7777777777764444455666666666666665542 221 111
Q ss_pred hhhcccccccccccccccccccccceEEeecCchhhHhhhcCcceEEEccCCcccccCCcccCCCCCCCEEeCCCCCCcC
Q 001612 823 DEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTG 902 (1044)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~~~~L~~L~~L~Ls~N~l~g 902 (1044)
.+..|++|..-+|.+. ..| ++.+++.|+.+|+|.|+++-
T Consensus 428 ---------------------------------------~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 428 ---------------------------------------NLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred ---------------------------------------hhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence 1333444555566665 456 67888888888888888874
Q ss_pred -CCcccccCcCCCCEEeCCCCccccccCccccCCCCCcEEECcCC
Q 001612 903 -PIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHN 946 (1044)
Q Consensus 903 -~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N 946 (1044)
.+|..... ++|++|||++|.-.-.--..|..+.++...++.-|
T Consensus 467 ~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 467 VTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 33443322 78888888888643233334555555555555555
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.5e-33 Score=318.78 Aligned_cols=483 Identities=30% Similarity=0.324 Sum_probs=299.7
Q ss_pred ecCCCCCCCCCcccccCCCCCCEEECCCCCCCCCChHhhhCCCCCcEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCC
Q 001612 217 SLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLL 296 (1044)
Q Consensus 217 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~ 296 (1044)
|.+.+.+. .+|..+-.-..++.|++..|.+....-++..+.-+|+.|++++|.+. .+|..+..+.+|+.|+++.|.+.
T Consensus 4 d~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~ 81 (1081)
T KOG0618|consen 4 DASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR 81 (1081)
T ss_pred ccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh
Confidence 44444443 34444444444677777777655544455555556777777777775 67777777777777777777665
Q ss_pred CCCCCCCCCCCCCcEEEccCCcCCccCcccccCCCCCCEEeccCccCCCCCchhhcCCCCCcEEeCcCCcccCCCCcccC
Q 001612 297 QGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHM 376 (1044)
Q Consensus 297 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 376 (1044)
..+ .....+.+|+++.|.+|.+. ..|..+..+++|+.|+++.|.+. .+|..+..++.++.++.++|......+.
T Consensus 82 ~vp-~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~--- 155 (1081)
T KOG0618|consen 82 SVP-SSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ--- 155 (1081)
T ss_pred hCc-hhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc---
Confidence 444 34445777888888777776 67888888888888888888887 6787888888888888888822212221
Q ss_pred CCcccEEEccCCCCCCCCCchhhhcCCCccEEEeecCcCCCCCCcccCCCcccceeecCCcccCCCCCcccccCCCCCCE
Q 001612 377 SKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDT 456 (1044)
Q Consensus 377 ~~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~ 456 (1044)
..++.+++..|.+.+.++.+ +.+++. .|+|.+|.+. ...+..++.|+.+....|++.... ...++++.
T Consensus 156 -~~ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~-----~~g~~l~~ 223 (1081)
T KOG0618|consen 156 -TSIKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE-----ISGPSLTA 223 (1081)
T ss_pred -ccchhhhhhhhhcccchhcc-hhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE-----ecCcchhe
Confidence 23777777777777666655 555555 5888888776 234566777888877777765321 12467888
Q ss_pred EEcCCCcCCCCCCchhhcCCCccEEEecCCcccCccchHHHHhCCCCCeEeCCCceeeeecCCCCCCCccccEEEccCCC
Q 001612 457 IDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCK 536 (1044)
Q Consensus 457 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 536 (1044)
|+.++|.++...+. ..-.+|+.++++.|+++ .+| +++..+.+|+.++..+|+++.++...+ ...+|+.|.+..|.
T Consensus 224 L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~-~~~~L~~l~~~~ne 298 (1081)
T KOG0618|consen 224 LYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLP-EWIGACANLEALNANHNRLVALPLRIS-RITSLVSLSAAYNE 298 (1081)
T ss_pred eeeccCcceeeccc--cccccceeeecchhhhh-cch-HHHHhcccceEecccchhHHhhHHHHh-hhhhHHHHHhhhhh
Confidence 88888877732221 12357888888888887 566 678888888888888888865544432 33478889999999
Q ss_pred CcCCCC-ccCCCCCcEEECCCCcCCCCCChhHhhhcccccceeecccccccCccCCcccCCCCCCceEEcCCCcccCCCC
Q 001612 537 LRVIPN-LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIP 615 (1044)
Q Consensus 537 l~~l~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~l~~n~l~~~~~ 615 (1044)
+..+|+ ....++|+.||+..|.+. ..|+.+......+++.|+.+.|++...+... =.
T Consensus 299 l~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~-e~-------------------- 356 (1081)
T KOG0618|consen 299 LEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYE-EN-------------------- 356 (1081)
T ss_pred hhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccccccccc-ch--------------------
Confidence 999988 667999999999999997 6777666555555677777777666543110 01
Q ss_pred CCCCCCcEEEccCCcCCcCCChhhhhccccceEEeccCCcccCcCccchhccCCCcEEEccCCcccccCChhHhhccccc
Q 001612 616 YPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEIL 695 (1044)
Q Consensus 616 ~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L 695 (1044)
..+.|+.|++.+|.++...-..+-+...|+.|+|++|++. .+|.....-.+.|
T Consensus 357 --------------------------~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~L 409 (1081)
T KOG0618|consen 357 --------------------------NHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEEL 409 (1081)
T ss_pred --------------------------hhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHh
Confidence 1233444444444444444444444455555555555554 4444333333445
Q ss_pred ceEECCCCcCcCccCCCCCCCCCccEEeCCCCCCcccCcccccCCCCCcEEECCCCccccCCChhhhcCCCCcEEEccCC
Q 001612 696 GVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSN 775 (1044)
Q Consensus 696 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 775 (1044)
++|+||+|+++.+ |+....+..|++|...+|++. ..| .+..++.|+.+|+|.|+++...-..-..-++|++||+++|
T Consensus 410 eeL~LSGNkL~~L-p~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 410 EELNLSGNKLTTL-PDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred HHHhcccchhhhh-hHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCC
Confidence 5555555555432 244444555555555555554 344 4555555555555555554222111111145555555555
Q ss_pred c
Q 001612 776 S 776 (1044)
Q Consensus 776 ~ 776 (1044)
.
T Consensus 487 ~ 487 (1081)
T KOG0618|consen 487 T 487 (1081)
T ss_pred c
Confidence 3
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=8.6e-32 Score=289.77 Aligned_cols=369 Identities=28% Similarity=0.385 Sum_probs=288.5
Q ss_pred ccCCCCCcccCCCCCCCCCCCCCcCCCCCCCCEEEcCCCCCCCCCCccccCCCCCcEEecCCCCCCCCCcccCCCChhHH
Q 001612 99 FSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGL 178 (1044)
Q Consensus 99 ~~l~~L~~LdLs~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~l~~~ 178 (1044)
+-++..|-.|+++|.|+|..+|..+..++.++.|.|....+. .+|..++.|.+|+||.+++|++.. +.+-
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~---------vhGE 73 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS---------VHGE 73 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh---------hhhh
Confidence 345667788888899988889999999999999999998887 899999999999999999988633 3455
Q ss_pred hhccccCceecCCCccCCCchhhhHHHHhccCCCceEEecCCCCCCCCCcccccCCCCCCEEECCCCCCCCCChHhhhCC
Q 001612 179 LQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADF 258 (1044)
Q Consensus 179 l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l 258 (1044)
+..++.|+.+.+..|++...++. ..+.++ ..|+.||||+|++.. .|..+..-+++-+|+||+|+|..+....|.++
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP--~diF~l-~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinL 149 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIP--TDIFRL-KDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINL 149 (1255)
T ss_pred hccchhhHHHhhhccccccCCCC--chhccc-ccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhh
Confidence 77888899999998887655432 234444 889999999999984 67888899999999999999988777778899
Q ss_pred CCCcEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCCCCCCCCCCCCCCCcEEEccCCcCC-ccCcccccCCCCCCEEe
Q 001612 259 FNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFS-GVLPDSIGNLKNLSRLD 337 (1044)
Q Consensus 259 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~ 337 (1044)
+.|-.|+|++|++. .+|+.+..+.+|++|+|++|.+....+..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|
T Consensus 150 tDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvD 228 (1255)
T KOG0444|consen 150 TDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVD 228 (1255)
T ss_pred HhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcc
Confidence 99999999999997 88999999999999999999988888888888999999999997655 46888999999999999
Q ss_pred ccCccCCCCCchhhcCCCCCcEEeCcCCcccCCCCcccCCCcccEEEccCCCCCCCCCchhhhcCCCccEEEeecCcCC-
Q 001612 338 LALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLN- 416 (1044)
Q Consensus 338 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~- 416 (1044)
++.|.+. ..|+.+.++++|+.|+|++|+++..--....-.+|++|+++.|+++ .+|.. +..+++|+.|.+.+|+++
T Consensus 229 lS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~a-vcKL~kL~kLy~n~NkL~F 305 (1255)
T KOG0444|consen 229 LSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDA-VCKLTKLTKLYANNNKLTF 305 (1255)
T ss_pred ccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHH-HhhhHHHHHHHhccCcccc
Confidence 9999998 7899999999999999999998754333223366777777777775 55554 667777777777777654
Q ss_pred CCCCcccCCCcccceeecCCcccCCCCCcccccCCCCCCEEEcCCCcCCCCCCchhhcCCCccEEEecCCcc
Q 001612 417 GSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKL 488 (1044)
Q Consensus 417 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 488 (1044)
.-+|+.++.+.+|+.+..++|.+. .+|+... .|..|+.|.++.|.+. .+|..+.-++.|+.|++..|.-
T Consensus 306 eGiPSGIGKL~~Levf~aanN~LE-lVPEglc-RC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 306 EGIPSGIGKLIQLEVFHAANNKLE-LVPEGLC-RCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred cCCccchhhhhhhHHHHhhccccc-cCchhhh-hhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 245667777777777766666654 2333222 3555666666666555 5566666566666666666543
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=7.5e-30 Score=274.88 Aligned_cols=363 Identities=28% Similarity=0.381 Sum_probs=211.5
Q ss_pred CCCCcEEEccCCcCC-ccCcccccCCCCCCEEeccCccCCCCCchhhcCCCCCcEEeCcCCcccCCCCcccCCCcccEEE
Q 001612 306 NSSLRTLMLSNTNFS-GVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLD 384 (1044)
Q Consensus 306 l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ 384 (1044)
++-.+-.|+++|.++ +..|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++......+..++.|+.+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHh
Confidence 344566777788887 467888888888888888888776 678888888888888888888776555555566777777
Q ss_pred ccCCCCCC-CCCchhhhcCCCccEEEeecCcCCCCCCcccCCCcccceeecCCcccCCCCCcccccCCCCCCEEEcCCCc
Q 001612 385 LSYNALPG-AISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNR 463 (1044)
Q Consensus 385 L~~n~l~~-~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~ 463 (1044)
+.+|++.. .||.+ +-.+..|+.|||++|++. ..|..+..-+++-.|+|++|++.. ||.-.+..+..|-.||+++|.
T Consensus 85 ~R~N~LKnsGiP~d-iF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTD-IFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred hhccccccCCCCch-hcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCcccc-CCchHHHhhHhHhhhccccch
Confidence 77776643 34444 566677777777777776 566666666666666666666653 343334445556666666666
Q ss_pred CCCCCCchhhcCCCccEEEecCCcccCccchHHHHhCCCCCeEeCCCceeeeecCCCCCCCccccEEEccCCCCc--CCC
Q 001612 464 LEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLR--VIP 541 (1044)
Q Consensus 464 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~--~l~ 541 (1044)
+. .+|..+..+..|++|.|++|.+. ... +..+|+ ..+|+.|.+++.+-+ .+|
T Consensus 162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQ---LrQLPs---------------------mtsL~vLhms~TqRTl~N~P 215 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLSMLQTLKLSNNPLN-HFQ---LRQLPS---------------------MTSLSVLHMSNTQRTLDNIP 215 (1255)
T ss_pred hh-hcCHHHHHHhhhhhhhcCCChhh-HHH---HhcCcc---------------------chhhhhhhcccccchhhcCC
Confidence 66 55666666666666666666654 222 222222 223444444444322 455
Q ss_pred C-ccCCCCCcEEECCCCcCCCCCChhHhhhcccccceeecccccccCccCCcccCCCCCCceEEcCCCcccCCCCCCCCC
Q 001612 542 N-LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPK 620 (1044)
Q Consensus 542 ~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 620 (1044)
. +..+.+|..+|+|.|.+. .+|+.+..+.+ |+.|++|+|+++.+... ...
T Consensus 216 tsld~l~NL~dvDlS~N~Lp-~vPecly~l~~--LrrLNLS~N~iteL~~~--~~~------------------------ 266 (1255)
T KOG0444|consen 216 TSLDDLHNLRDVDLSENNLP-IVPECLYKLRN--LRRLNLSGNKITELNMT--EGE------------------------ 266 (1255)
T ss_pred CchhhhhhhhhccccccCCC-cchHHHhhhhh--hheeccCcCceeeeecc--HHH------------------------
Confidence 5 677778888888888876 67777666543 55566665555544211 000
Q ss_pred CcEEEccCCcCCcCCChhhhhccccceEEeccCCcccCcCccchhccCCCcEEEccCCccc-ccCChhHhhcccccceEE
Q 001612 621 AVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLS-GKMPTCLIKMSEILGVLN 699 (1044)
Q Consensus 621 l~~l~ls~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~ip~~~~~~~~~L~~L~ 699 (1044)
..+++.|+++.|+++ ..|..+|.++.|+.|.+.+|+++ .-||..++.+ ..|+++.
T Consensus 267 ----------------------W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL-~~Levf~ 322 (1255)
T KOG0444|consen 267 ----------------------WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL-IQLEVFH 322 (1255)
T ss_pred ----------------------Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhh-hhhHHHH
Confidence 122333333333333 34555555555555555555543 1245555544 4455555
Q ss_pred CCCCcCcCccCCCCCCCCCccEEeCCCCCCcccCcccccCCCCCcEEECCCCcc
Q 001612 700 LRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKI 753 (1044)
Q Consensus 700 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 753 (1044)
.++|.+. ..|+.++.+..|+.|.|++|++. .+|+++.-++.|+.||+..|+-
T Consensus 323 aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 323 AANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred hhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 4444443 34444444455555555555444 3444444445555555554443
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=8.4e-25 Score=225.60 Aligned_cols=420 Identities=23% Similarity=0.231 Sum_probs=253.3
Q ss_pred CccEEEecCCcccCccchHHHHhCCCCCeEeCCCceeeeecCCCCCCCccccEEEccC-CCCcCCCC--ccCCCCCcEEE
Q 001612 477 NLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLAS-CKLRVIPN--LKNQSKLFNLD 553 (1044)
Q Consensus 477 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~-n~l~~l~~--l~~l~~L~~L~ 553 (1044)
.-..++|..|+|+ .+|..+|+.+++|+.|+|++|.|+.+...++....++.+|-+.+ |+|+.+|. |.++.+++.|.
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4556677777776 66777777777777777777777777766666666666665555 78888886 88889999999
Q ss_pred CCCCcCCCCCChhHhhhcccccceeecccccccCccCCcccCCCCCCceEEcCCCcccCCCCCCCCCCcEEEccCCcCCc
Q 001612 554 LSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTS 633 (1044)
Q Consensus 554 Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~ls~n~~~~ 633 (1044)
+.-|++.....+.++.+.. +..|.+.+|.+..+.. ..+..+..++.+.+..|++..... .+.+.. ++..+.+
T Consensus 147 lNan~i~Cir~~al~dL~~--l~lLslyDn~~q~i~~-~tf~~l~~i~tlhlA~np~icdCn--L~wla~-~~a~~~i-- 218 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPS--LSLLSLYDNKIQSICK-GTFQGLAAIKTLHLAQNPFICDCN--LPWLAD-DLAMNPI-- 218 (498)
T ss_pred cChhhhcchhHHHHHHhhh--cchhcccchhhhhhcc-ccccchhccchHhhhcCccccccc--cchhhh-HHhhchh--
Confidence 9999998777788888765 7888888888887743 246777888999998888643211 011100 0000100
Q ss_pred CCChhhhhccccceEEeccCCcccCcCccchhcc-CCCcEEEccCCcccccCChhHhhcccccceEECCCCcCcCccCCC
Q 001612 634 SIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRA-KYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVT 712 (1044)
Q Consensus 634 ~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~ 712 (1044)
..+ ......-..+.+.++..+-+..|... .++..--.+.+...+..|..-+..+++|++|+|++|+++++-+.+
T Consensus 219 ----ets-garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a 293 (498)
T KOG4237|consen 219 ----ETS-GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA 293 (498)
T ss_pred ----hcc-cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence 000 01112222334444443333333221 222221223333444555433333478888888888888888888
Q ss_pred CCCCCCccEEeCCCCCCcccCcccccCCCCCcEEECCCCccccCCChhhhcCCCCcEEEccCCccccCCCCCCCCCCCCc
Q 001612 713 FPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPK 792 (1044)
Q Consensus 713 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i~~~~~~~~l~~ 792 (1044)
|.+...+++|+|..|++.......|.++..|++|+|.+|+|+..-|..|..+.+|..|.|-+|+|.
T Consensus 294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~-------------- 359 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN-------------- 359 (498)
T ss_pred hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc--------------
Confidence 888888888888888887766777888888888888888888777777777777777777666653
Q ss_pred ccEEEcCCCcCCCcCChhhHhhhhhcccchh--hhcc--cccccccccccccccccc--cceEEeecCchhhHhhhcCcc
Q 001612 793 LQIVDLASNNFGGRVPQKCITSWKAMMSDED--EAQS--NFKDVHFEFLKIADFYYQ--DAVTVTSKGLEMELVKILSIF 866 (1044)
Q Consensus 793 L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~l 866 (1044)
...--.|++.|..-..... ..+. .++.+++.-....++... +.......+... ...+-+
T Consensus 360 ------------CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP---~~c~c~ 424 (498)
T KOG4237|consen 360 ------------CNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCP---PPCTCL 424 (498)
T ss_pred ------------CccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCC---CCcchh
Confidence 3333356666643322111 1111 011111111111110000 000000000000 011222
Q ss_pred -eEEEccCCcccccCCcccCCCCCCCEEeCCCCCCcCCCcccccCcCCCCEEeCCCCccccccCccccCCCCCcEEECcC
Q 001612 867 -TSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSH 945 (1044)
Q Consensus 867 -~~LdLs~N~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~ 945 (1044)
++...|++.++ .+|..|. ..-.+|++.+|.++ .+|.+ .+..| .+|+|+|+++..--..|.+++.|.+|-+||
T Consensus 425 ~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsy 497 (498)
T KOG4237|consen 425 DTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSY 497 (498)
T ss_pred hhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEec
Confidence 22334555554 5565554 24577889999998 78887 67788 899999999877778899999999999998
Q ss_pred C
Q 001612 946 N 946 (1044)
Q Consensus 946 N 946 (1044)
|
T Consensus 498 n 498 (498)
T KOG4237|consen 498 N 498 (498)
T ss_pred C
Confidence 7
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=4.9e-24 Score=220.00 Aligned_cols=278 Identities=19% Similarity=0.169 Sum_probs=178.0
Q ss_pred CCCceEEecCCCCCCCCCcccccCCCCCCEEECCCCCCCCCChHhhhCCCCCcEEEccC-CCCCCCcChhhcCCCCCCEE
Q 001612 210 VPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSH-SRLNGTFPEKILQVHTLETL 288 (1044)
Q Consensus 210 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L 288 (1044)
++.-..++|..|+|+.+.+.+|+.+++|+.|||++|.|+.+-|++|.++++|.+|-+.+ |+|+......|+.+..|+.|
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 36778888888888888888888888888888888888888888888888887777766 77775555677888888888
Q ss_pred ECCCCCCCCCCCCCCCCCCCCcEEEccCCcCCccCcccccCCCCCCEEeccCccCCC------------CCchhhcCCCC
Q 001612 289 DLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDG------------SIPTSLANLTQ 356 (1044)
Q Consensus 289 ~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~------------~~p~~l~~l~~ 356 (1044)
.+.-|++.......|..+++|..|.+.+|.+...-...|..+..++++.+..|.+.. ..|..++...-
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 888777766666677778888888888887774444477777888888877776321 11222222222
Q ss_pred CcEEeCcCCcccCCCCcccCC--CcccEEEccCCCCCCCCCchhhhcCCCccEEEeecCcCCCCCCcccCCCcccceeec
Q 001612 357 LVYLDLSFNKFVGPIPSLHMS--KNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQL 434 (1044)
Q Consensus 357 L~~L~L~~n~l~~~~~~~~~~--~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 434 (1044)
..-..+.+.++...-+.-+.. +.+..=-.+.+...+..|...|..+++|+.|++++|++++.-+.+|.....+++|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 222223333322211111111 122111223344455667777888888888888888888888888888888888888
Q ss_pred CCcccCCCCCcccccCCCCCCEEEcCCCcCCCCCCchhhcCCCccEEEecCCcc
Q 001612 435 AENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKL 488 (1044)
Q Consensus 435 ~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 488 (1044)
..|++.. +....+..++.|+.|++.+|+|+...|..|..+..|.+|++-.|.+
T Consensus 306 ~~N~l~~-v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 306 TRNKLEF-VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred CcchHHH-HHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 7777652 2222233344455555555555544444444444455555444443
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=5.7e-20 Score=235.67 Aligned_cols=340 Identities=19% Similarity=0.228 Sum_probs=207.2
Q ss_pred cchHHHHhCCCCCeEeCCCceee-------eecCCCCCCCccccEEEccCCCCcCCCCccCCCCCcEEECCCCcCCCCCC
Q 001612 492 VQLAAIQRLHNLAKLELSYNNLT-------VNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIP 564 (1044)
Q Consensus 492 ~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p 564 (1044)
+...+|.++++|+.|.+..+... ..+......+.+|+.|.+.++.++.+|.--...+|+.|++++|++. .++
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-ccc
Confidence 34455777777777777554321 1122223345567777777777777776335567777777777765 344
Q ss_pred hhHhhhcccccceeeccccc-ccCccCCcccCCCCCCceEEcCCCcccCCCCCCCCCCcEEEccCCcCCcCCChhhhhcc
Q 001612 565 NWVWEIGNVSLQYLNLSHNL-LSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFV 643 (1044)
Q Consensus 565 ~~~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~~~ 643 (1044)
..+..+ .+|+.|+++++. +..++ .+..+++|+.|++++|. ....+|..+.. +
T Consensus 628 ~~~~~l--~~Lk~L~Ls~~~~l~~ip---~ls~l~~Le~L~L~~c~---------------------~L~~lp~si~~-L 680 (1153)
T PLN03210 628 DGVHSL--TGLRNIDLRGSKNLKEIP---DLSMATNLETLKLSDCS---------------------SLVELPSSIQY-L 680 (1153)
T ss_pred cccccC--CCCCEEECCCCCCcCcCC---ccccCCcccEEEecCCC---------------------Cccccchhhhc-c
Confidence 333222 235555555432 22222 13334455555555444 33345554443 5
Q ss_pred ccceEEeccCCcccCcCccchhccCCCcEEEccCCcccccCChhHhhcccccceEECCCCcCcCccCCCCCCCCCccEEe
Q 001612 644 SFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLD 723 (1044)
Q Consensus 644 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 723 (1044)
++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|.. ..+|+.|++++|.+.. +|..+ .+++|++|+
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~ 753 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEE-FPSNL-RLENLDELI 753 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCcccc-ccccc-ccccccccc
Confidence 666666666665545555544 5667777777776654455532 2567777777777653 33333 456677777
Q ss_pred CCCCCC-------cccCcccccCCCCCcEEECCCCccccCCChhhhcCCCCcEEEccCCccccCCCCCCCCCCCCcccEE
Q 001612 724 LNGNQL-------GGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIV 796 (1044)
Q Consensus 724 Ls~N~l-------~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i~~~~~~~~l~~L~~L 796 (1044)
+.++.. ....|..+..+++|+.|++++|+..+.+|.+++++++|+.|++++|...+.+ |... .+++|+.|
T Consensus 754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L--P~~~-~L~sL~~L 830 (1153)
T PLN03210 754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL--PTGI-NLESLESL 830 (1153)
T ss_pred ccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee--CCCC-CccccCEE
Confidence 765332 1112222334567888888888777778888888888888888877655555 4433 57788888
Q ss_pred EcCCCcCCCcCChhhHhhhhhcccchhhhcccccccccccccccccccccceEEeecCchhhHhhhcCcceEEEccCCcc
Q 001612 797 DLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNF 876 (1044)
Q Consensus 797 dls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l 876 (1044)
++++|.....+|. ..++++.|+|++|.+
T Consensus 831 ~Ls~c~~L~~~p~----------------------------------------------------~~~nL~~L~Ls~n~i 858 (1153)
T PLN03210 831 DLSGCSRLRTFPD----------------------------------------------------ISTNISDLNLSRTGI 858 (1153)
T ss_pred ECCCCCccccccc----------------------------------------------------cccccCEeECCCCCC
Confidence 8887755444431 124577788888888
Q ss_pred cccCCcccCCCCCCCEEeCCC-CCCcCCCcccccCcCCCCEEeCCCCc
Q 001612 877 DGPIPEEIGRLKSLHGLNLSQ-NALTGPIPSAIGNLQQLESLDLSMNH 923 (1044)
Q Consensus 877 ~g~ip~~~~~L~~L~~L~Ls~-N~l~g~ip~~~~~l~~L~~L~ls~N~ 923 (1044)
+ .+|..++.+++|+.|++++ |++. .+|..+..++.|+.++++++.
T Consensus 859 ~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 859 E-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred c-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence 7 5788888888888888887 4455 577778888888888888764
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=7e-20 Score=234.88 Aligned_cols=316 Identities=22% Similarity=0.261 Sum_probs=229.6
Q ss_pred cccccCCCCCCEEECCCCC------CCCCChHhhhCCC-CCcEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCCCCCC
Q 001612 228 HPSLAKLQSLSVIRLDQND------LLSPVPEFLADFF-NLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSL 300 (1044)
Q Consensus 228 ~~~l~~l~~L~~L~Ls~n~------~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~ 300 (1044)
+.+|.++++|+.|.+..+. +...+|+.|..++ +|+.|.+.++.+. .+|..+ ...+|+.|+++++++... .
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L-~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKL-W 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccccc-c
Confidence 4568889999999986653 2334666677665 5999999999886 778776 578999999999876543 2
Q ss_pred CCCCCCCCCcEEEccCCcCCccCcccccCCCCCCEEeccCccCCCCCchhhcCCCCCcEEeCcCCcccCCCCcccCCCcc
Q 001612 301 PDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNL 380 (1044)
Q Consensus 301 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L 380 (1044)
..+..+++|+.|+++++.....+|. ++.+++|++|++++|.....+|..++++++|+.|++++|...+.+|....+++|
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL 706 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSL 706 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCC
Confidence 3456789999999998765556664 788999999999998877788999999999999999998766677766667899
Q ss_pred cEEEccCCCCCCCCCchhhhcCCCccEEEeecCcCCCCCCcccCCCcccceeecCCcccCCC------CCcccccCCCCC
Q 001612 381 THLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGL------IPEFSNASSSAL 454 (1044)
Q Consensus 381 ~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~------~~~~~~~~~~~L 454 (1044)
+.|++++|...+.+|.. .++|+.|++++|.+. .+|..+ .+++|++|.+.++..... ++.......++|
T Consensus 707 ~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CEEeCCCCCCccccccc----cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence 99999999766565542 468899999999886 566554 578888888876442211 111122234678
Q ss_pred CEEEcCCCcCCCCCCchhhcCCCccEEEecCCcccCccchHHHHhCCCCCeEeCCCceeeeecCCCCCCCccccEEEccC
Q 001612 455 DTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLAS 534 (1044)
Q Consensus 455 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 534 (1044)
+.|++++|...+.+|.+++++++|+.|++++|...+.+|... ++++|+.|++++|..... ....+.+|++|++++
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~---~p~~~~nL~~L~Ls~ 855 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRT---FPDISTNISDLNLSR 855 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCcccc---ccccccccCEeECCC
Confidence 888888887777888888888888888888876545666542 677788888877643210 112234566666666
Q ss_pred CCCcCCCC-ccCCCCCcEEECCCCc
Q 001612 535 CKLRVIPN-LKNQSKLFNLDLSDNQ 558 (1044)
Q Consensus 535 n~l~~l~~-l~~l~~L~~L~Ls~n~ 558 (1044)
|.++.+|. +..+++|+.|++++|.
T Consensus 856 n~i~~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 856 TGIEEVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred CCCccChHHHhcCCCCCEEECCCCC
Confidence 66666665 6666666666666643
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=9.2e-21 Score=224.15 Aligned_cols=54 Identities=20% Similarity=0.309 Sum_probs=31.3
Q ss_pred CCcEEECCCCcCCCCCChhHhhhcccccceeecccccccCccCCcccCCCCCCceEEcCCCccc
Q 001612 548 KLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQ 611 (1044)
Q Consensus 548 ~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~l~~n~l~ 611 (1044)
.-..|++++|.++ .+|..+.. +++.|++++|+++.++.. .++|++|++++|+++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~~----~L~~L~L~~N~Lt~LP~l-----p~~Lk~LdLs~N~Lt 255 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLPA----HITTLVIPDNNLTSLPAL-----PPELRTLEVSGNQLT 255 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchhc----CCCEEEccCCcCCCCCCC-----CCCCcEEEecCCccC
Confidence 4567788888777 56665432 366666666666655321 244555555555554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=2.4e-20 Score=220.70 Aligned_cols=266 Identities=27% Similarity=0.336 Sum_probs=144.1
Q ss_pred cceeecCCcccCCCCCcccccCCCCCCEEEcCCCcCCCCCCchhhcCCCccEEEecCCcccCccchHHHHhCCCCCeEeC
Q 001612 429 LQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLEL 508 (1044)
Q Consensus 429 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 508 (1044)
-..|+++++.++. +|.... ++|+.|++.+|+++ .+|.. .++|++|++++|+++ .+|. ..++|+.|++
T Consensus 203 ~~~LdLs~~~Lts-LP~~l~---~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~L 269 (788)
T PRK15387 203 NAVLNVGESGLTT-LPDCLP---AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPV----LPPGLLELSI 269 (788)
T ss_pred CcEEEcCCCCCCc-CCcchh---cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccC----cccccceeec
Confidence 4456666666653 332211 34566666666655 23431 345555555555555 3332 1234445555
Q ss_pred CCceeeeecCCCCCCCccccEEEccCCCCcCCCCccCCCCCcEEECCCCcCCCCCChhHhhhcccccceeecccccccCc
Q 001612 509 SYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSL 588 (1044)
Q Consensus 509 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l 588 (1044)
++|.++.++. .+.+|+.|++++|+++.+|.. .++ |+.|++++|+++.+
T Consensus 270 s~N~L~~Lp~----lp~~L~~L~Ls~N~Lt~LP~~--p~~--------------------------L~~LdLS~N~L~~L 317 (788)
T PRK15387 270 FSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL--PPG--------------------------LQELSVSDNQLASL 317 (788)
T ss_pred cCCchhhhhh----chhhcCEEECcCCcccccccc--ccc--------------------------cceeECCCCccccC
Confidence 5554443221 223344444444444444431 233 44444444444443
Q ss_pred cCCcccCCCCCCceEEcCCCcccCCCCCCCCCCcEEEccCCcCCcCCChhhhhccccceEEeccCCcccCcCccchhccC
Q 001612 589 QRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAK 668 (1044)
Q Consensus 589 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 668 (1044)
+.. ..+|+.|++++|.+++ +|..+.+|+.|++++|++++ +|. ....++.|++++|.+++ +|.. ..
T Consensus 318 p~l-----p~~L~~L~Ls~N~L~~-LP~lp~~Lq~LdLS~N~Ls~-LP~----lp~~L~~L~Ls~N~L~~-LP~l---~~ 382 (788)
T PRK15387 318 PAL-----PSELCKLWAYNNQLTS-LPTLPSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLTS-LPAL---PS 382 (788)
T ss_pred CCC-----cccccccccccCcccc-ccccccccceEecCCCccCC-CCC----CCcccceehhhcccccc-Cccc---cc
Confidence 211 0234555555555543 44444455566666665553 332 13456666677777664 4432 24
Q ss_pred CCcEEEccCCcccccCChhHhhcccccceEECCCCcCcCccCCCCCCCCCccEEeCCCCCCcccCcccccCCCCCcEEEC
Q 001612 669 YLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDL 748 (1044)
Q Consensus 669 ~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 748 (1044)
+|+.|++++|+++ .+|.. .++|+.|++++|.+++ +|.. ..+|+.|++++|+++ .+|..+.++++|+.|+|
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l----~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVL----PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred ccceEEecCCccc-CCCCc----ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 5777778877777 45542 2567777888877775 3432 235777888888877 56777777888888888
Q ss_pred CCCccccCCChhhhcC
Q 001612 749 GNNKIRDTFPWWLENI 764 (1044)
Q Consensus 749 s~N~l~~~~p~~l~~l 764 (1044)
++|++++..|..+..+
T Consensus 453 s~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 453 EGNPLSERTLQALREI 468 (788)
T ss_pred CCCCCCchHHHHHHHH
Confidence 8888887777665443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=2.4e-18 Score=205.58 Aligned_cols=357 Identities=18% Similarity=0.228 Sum_probs=205.4
Q ss_pred cccCCChHHHHHHHHHHHhcCcCCCCCccccCC----CCCCCCCcccce----------------eEeCCCCCeEEEeCC
Q 001612 25 LVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQ----WSQSNDCCTWSG----------------VDCDEAGRVIGLDLS 84 (1044)
Q Consensus 25 ~~~~~~~~~~~~~ll~~k~~~~~~~~~~~~l~~----W~~~~~~c~w~g----------------v~C~~~~~v~~L~L~ 84 (1044)
+.+++-.++|.+.+++..+.+.+++ .+.+ |..++|.|.-+. |.|.. +.|+.+..-
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~l~~p~----~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~-~~vt~l~~~ 129 (754)
T PRK15370 55 HPPETASPEEIKSKFECLRMLAFPA----YADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGG-KSVTYTRVT 129 (754)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCc----hhhccccccCCCCcccccCCcchhhheeeecCCceEEecCC-Ccccccccc
Confidence 3445556789999999999997643 3555 988889997666 67754 567777766
Q ss_pred CCCccCccCCCCCcccCCCCCcccCC----CCCCCCCCCC---Cc-----CCCCCCCCEEEcCCCCCCCCCCccccCCCC
Q 001612 85 EESISAGIDNSSPLFSLKYLQSLNLA----FNMFNATEIP---SG-----LGSLTNLTNLNLSNAGFAGQIPIQVSGMTR 152 (1044)
Q Consensus 85 ~~~l~g~~~~~~~l~~l~~L~~LdLs----~n~~~~~~lp---~~-----l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~ 152 (1044)
+.........+... -.|-..- .+.-.+. -+ .+ -+-..+.+.|+++++.++ .+|..+. +.
T Consensus 130 g~~~~~~~~~~~~~-----~~~~~~w~~w~~~~~~~~-~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~ 200 (754)
T PRK15370 130 ESEQASSASGSKDA-----VNYELIWSEWVKEAPAKE-AANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQ 200 (754)
T ss_pred cccccccCCCCCCh-----hhHHHHHHHHHhcCCCCc-cccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cC
Confidence 53322211100000 0000000 0000000 00 00 011134455555555554 3454442 34
Q ss_pred CcEEecCCCCCCCCCcccCCCChhHHhhccccCceecCCCccCCCchhhhHHHHhccCCCceEEecCCCCCCCCCccccc
Q 001612 153 LVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLA 232 (1044)
Q Consensus 153 L~~L~ls~n~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 232 (1044)
|++|++++|++...|.. + .++|++|++++|.++..+... .+.|+.|++++|.+. .+|..+.
T Consensus 201 L~~L~Ls~N~LtsLP~~---------l--~~nL~~L~Ls~N~LtsLP~~l-------~~~L~~L~Ls~N~L~-~LP~~l~ 261 (754)
T PRK15370 201 ITTLILDNNELKSLPEN---------L--QGNIKTLYANSNQLTSIPATL-------PDTIQEMELSINRIT-ELPERLP 261 (754)
T ss_pred CcEEEecCCCCCcCChh---------h--ccCCCEEECCCCccccCChhh-------hccccEEECcCCccC-cCChhHh
Confidence 55555555555443311 1 135556666665555443211 145777777777766 3444443
Q ss_pred CCCCCCEEECCCCCCCCCChHhhhCCCCCcEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCCCCCCCCCCCCCCCcEE
Q 001612 233 KLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTL 312 (1044)
Q Consensus 233 ~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L 312 (1044)
++|+.|++++|++.. +|..+. ++|++|++++|+++ .+|..+. ++|+.|++++|.+...+.. + .++|++|
T Consensus 262 --s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP~~-l--~~sL~~L 330 (754)
T PRK15370 262 --SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTALPET-L--PPGLKTL 330 (754)
T ss_pred --CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccCCcc-c--cccceec
Confidence 467777777777763 454443 46777777777776 3454332 4677777777776543211 1 2578888
Q ss_pred EccCCcCCccCcccccCCCCCCEEeccCccCCCCCchhhcCCCCCcEEeCcCCcccCCCCcccCCCcccEEEccCCCCCC
Q 001612 313 MLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPG 392 (1044)
Q Consensus 313 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~ 392 (1044)
++++|.+++ +|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|.++..++.+. ..|+.|++++|++.
T Consensus 331 ~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~- 401 (754)
T PRK15370 331 EAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLPENLP--AALQIMQASRNNLV- 401 (754)
T ss_pred cccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcc-
Confidence 888888774 565543 68888888888887 4666553 678888888888875433322 46888888888886
Q ss_pred CCCch---hhhcCCCccEEEeecCcCCCCCCcccCCCcccceeecCCcccCC
Q 001612 393 AISST---DWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGG 441 (1044)
Q Consensus 393 ~i~~~---~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 441 (1044)
.+|.. ....++++..+++.+|++.. ..+.+|+.+ ++.+.+.|
T Consensus 402 ~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~~g 446 (754)
T PRK15370 402 RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGYQG 446 (754)
T ss_pred cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh-hhcccccC
Confidence 55543 13345788899999998862 234455555 34444444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1.4e-18 Score=207.60 Aligned_cols=137 Identities=26% Similarity=0.379 Sum_probs=61.5
Q ss_pred CceEEcCCCcccCCCCC-CCCCCcEEEccCCcCCcCCChhhhhccccceEEeccCCcccCcCccchhccCCCcEEEccCC
Q 001612 600 ITVLDLHSNQLQGNIPY-PPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKN 678 (1044)
Q Consensus 600 L~~L~l~~n~l~~~~~~-~~~~l~~l~ls~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N 678 (1044)
...|+++++.++. +|. .++.++.|++++|+++ .+|..+. .+|+.|++++|.+++ +|..+. .+|+.|++++|
T Consensus 180 ~~~L~L~~~~Lts-LP~~Ip~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 180 KTELRLKILGLTT-IPACIPEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATLP--DTIQEMELSIN 251 (754)
T ss_pred ceEEEeCCCCcCc-CCcccccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhhh--ccccEEECcCC
Confidence 3445555555442 222 2334445555555544 3443332 345555555555542 233322 24555555555
Q ss_pred cccccCChhHhhcccccceEECCCCcCcCccCCCCCCCCCccEEeCCCCCCcccCcccccCCCCCcEEECCCCccc
Q 001612 679 KLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIR 754 (1044)
Q Consensus 679 ~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 754 (1044)
++. .+|..+. ++|+.|++++|+++. +|..+. .+|+.|++++|++++ +|..+. ++|+.|++++|+++
T Consensus 252 ~L~-~LP~~l~---s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 252 RIT-ELPERLP---SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT 317 (754)
T ss_pred ccC-cCChhHh---CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc
Confidence 555 4554432 345555555555543 233332 245555555555542 332221 24444555555544
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=6.1e-18 Score=188.93 Aligned_cols=135 Identities=25% Similarity=0.222 Sum_probs=62.9
Q ss_pred cccceEEeccCCcccCc----CccchhccCCCcEEEccCCcccc------cCChhHhhcccccceEECCCCcCcCccCCC
Q 001612 643 VSFTLFFSLSNNSITGV----IPETLCRAKYLLVLDLSKNKLSG------KMPTCLIKMSEILGVLNLRGNSLSGTLSVT 712 (1044)
Q Consensus 643 ~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~------~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~ 712 (1044)
+..++.++++++.++.. ++..+...++++.++++++.+.+ .++..+... ++|+.|++++|.+.+..+..
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG-CGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc-CceeEEEccCCCCChhHHHH
Confidence 44566666666665432 33444455556666666665541 112222232 45555555555554433333
Q ss_pred CCCCCC---ccEEeCCCCCCcc----cCcccccCC-CCCcEEECCCCccccC----CChhhhcCCCCcEEEccCCccc
Q 001612 713 FPGNCG---LHTLDLNGNQLGG----TVPKSLANC-RNLVVLDLGNNKIRDT----FPWWLENISSLRVLVLRSNSFY 778 (1044)
Q Consensus 713 ~~~l~~---L~~L~Ls~N~l~~----~~p~~l~~l-~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~ 778 (1044)
+..+.. |++|++++|++++ .+...+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 333322 5555555555542 122233334 4555555555555422 1223333444555555555443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=1.1e-17 Score=186.82 Aligned_cols=186 Identities=23% Similarity=0.230 Sum_probs=82.2
Q ss_pred ccCCCCCCCCCCCCCcCCCCCCCCEEEcCCCCCCCC----CCccccCCCCCcEEecCCCCCCCCCcccCCCChhHHhhcc
Q 001612 107 LNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQ----IPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNL 182 (1044)
Q Consensus 107 LdLs~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~----lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~l~~~l~~l 182 (1044)
|+|+.+.+++...+..+..+.+|++|+++++.+++. ++..+...+.|++|+++++.+...+. ....+...+.++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~--~~~~~~~~l~~~ 80 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPR--GLQSLLQGLTKG 80 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcch--HHHHHHHHHHhc
Confidence 444444444333444444455555555555554322 33334444555555555544321000 001112234444
Q ss_pred ccCceecCCCccCCCchhhhHHHHhccCCCceEEecCCCCCCCC----CcccccCC-CCCCEEECCCCCCCCC----ChH
Q 001612 183 AELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGP----IHPSLAKL-QSLSVIRLDQNDLLSP----VPE 253 (1044)
Q Consensus 183 ~~L~~L~l~~~~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l-~~L~~L~Ls~n~~~~~----~~~ 253 (1044)
++|++|+++++.+.......+..+... ++|++|++++|++.+. +...+..+ ++|+.|++++|.+++. ++.
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 555555555555544333333333322 3455555555554421 11223344 5555555555555422 223
Q ss_pred hhhCCCCCcEEEccCCCCCCC----cChhhcCCCCCCEEECCCCCC
Q 001612 254 FLADFFNLTSLRLSHSRLNGT----FPEKILQVHTLETLDLSGNSL 295 (1044)
Q Consensus 254 ~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~ 295 (1044)
.+..+++|++|++++|.+++. ++..+..+++|++|++++|.+
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence 344455555555555555421 222233344555555555543
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.5e-17 Score=152.57 Aligned_cols=181 Identities=30% Similarity=0.528 Sum_probs=138.2
Q ss_pred CCCccEEeCCCCCCcccCcccccCCCCCcEEECCCCccccCCChhhhcCCCCcEEEccCCccccCCCCCCCCCCCCcccE
Q 001612 716 NCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQI 795 (1044)
Q Consensus 716 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i~~~~~~~~l~~L~~ 795 (1044)
+...+.|.|++|+++ .+|..++.+.+|+.|++++|++. ..|..++.++.|+.|+++-|++.-. |..++.+|.|++
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~l---prgfgs~p~lev 106 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNIL---PRGFGSFPALEV 106 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcC---ccccCCCchhhh
Confidence 345666777777777 56667777777777777777776 4566677778888888877776422 777888888888
Q ss_pred EEcCCCcCCCc-CChhhHhhhhhcccchhhhcccccccccccccccccccccceEEeecCchhhHhhhcCcceEEEccCC
Q 001612 796 VDLASNNFGGR-VPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRN 874 (1044)
Q Consensus 796 Ldls~N~l~g~-ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N 874 (1044)
||+++|+++.. +|-.+| .++.|+.|+|+.|
T Consensus 107 ldltynnl~e~~lpgnff-------------------------------------------------~m~tlralyl~dn 137 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFF-------------------------------------------------YMTTLRALYLGDN 137 (264)
T ss_pred hhccccccccccCCcchh-------------------------------------------------HHHHHHHHHhcCC
Confidence 88888888653 342211 2455677889999
Q ss_pred cccccCCcccCCCCCCCEEeCCCCCCcCCCcccccCcCCCCEEeCCCCccccccCccccCCCC---CcEEECcCCccccc
Q 001612 875 NFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTF---LSFLNLSHNNLVGK 951 (1044)
Q Consensus 875 ~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~---L~~l~l~~N~l~g~ 951 (1044)
.|. .+|..+|+|++|+.|.+..|.+- ..|.+++.+++|+.|++.+|+++ .+|..++++.- =+.+.+.+|++..+
T Consensus 138 dfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~p 214 (264)
T KOG0617|consen 138 DFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNP 214 (264)
T ss_pred Ccc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCCh
Confidence 998 78889999999999999999998 89999999999999999999999 56767776542 34566778888766
Q ss_pred CC
Q 001612 952 IP 953 (1044)
Q Consensus 952 ip 953 (1044)
|-
T Consensus 215 Ia 216 (264)
T KOG0617|consen 215 IA 216 (264)
T ss_pred HH
Confidence 54
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.61 E-value=1.8e-15 Score=180.85 Aligned_cols=117 Identities=38% Similarity=0.681 Sum_probs=104.8
Q ss_pred cceEEEccCCcccccCCcccCCCCCCCEEeCCCCCCcCCCcccccCcCCCCEEeCCCCccccccCccccCCCCCcEEECc
Q 001612 865 IFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLS 944 (1044)
Q Consensus 865 ~l~~LdLs~N~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~ 944 (1044)
.++.|+|++|.++|.+|.+++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|+.++++++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCccc--ccccccccccCCCCCCCCCCC-CCC
Q 001612 945 HNNLVGKIPISTQ--LQSFLATSFEGNKGLCGPPLN-VCR 981 (1044)
Q Consensus 945 ~N~l~g~ip~~~~--~~~~~~~~~~~n~~lcg~~~~-~c~ 981 (1044)
+|+++|.+|.... ........+.||+++||.|.. .|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999997522 223345678999999997643 374
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=2.2e-16 Score=144.88 Aligned_cols=185 Identities=29% Similarity=0.423 Sum_probs=104.0
Q ss_pred ccCCCcEEEccCCcccccCChhHhhcccccceEECCCCcCcCccCCCCCCCCCccEEeCCCCCCcccCcccccCCCCCcE
Q 001612 666 RAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVV 745 (1044)
Q Consensus 666 ~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 745 (1044)
+++..+.|.||+|+++ .+|..+.++ .+|++|++++|++.. .|..++.+++|+.|+++-|++. ..|..|+.++.|++
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l-~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAEL-KNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHh-hhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 3445556666666666 556556655 566666666666542 3445555566666666666665 55666666666666
Q ss_pred EECCCCcccc-CCChhhhcCCCCcEEEccCCccccCCCCCCCCCCCCcccEEEcCCCcCCCcCChhhHhhhhhcccchhh
Q 001612 746 LDLGNNKIRD-TFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDE 824 (1044)
Q Consensus 746 L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~g~i~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~~~ 824 (1044)
||+.+|.+.. ..|..|-.++.|+.|+|++|.|.-. |..++.+++|++|.+.
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~l---p~dvg~lt~lqil~lr------------------------- 158 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEIL---PPDVGKLTNLQILSLR------------------------- 158 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcccC---ChhhhhhcceeEEeec-------------------------
Confidence 6666666542 2344444444455555555544311 3333444444444443
Q ss_pred hcccccccccccccccccccccceEEeecCchhhHhhhcCcceEEEccCCcccccCCcccCCCCCCCEEeCCCCCCcCCC
Q 001612 825 AQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPI 904 (1044)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~i 904 (1044)
.|.+- ..|.++|.|+.|++|.+.+|+++ .+
T Consensus 159 ------------------------------------------------dndll-~lpkeig~lt~lrelhiqgnrl~-vl 188 (264)
T KOG0617|consen 159 ------------------------------------------------DNDLL-SLPKEIGDLTRLRELHIQGNRLT-VL 188 (264)
T ss_pred ------------------------------------------------cCchh-hCcHHHHHHHHHHHHhcccceee-ec
Confidence 33333 45777777777777777777777 56
Q ss_pred cccccCcCC---CCEEeCCCCccccccCccc
Q 001612 905 PSAIGNLQQ---LESLDLSMNHLSGQIPIQL 932 (1044)
Q Consensus 905 p~~~~~l~~---L~~L~ls~N~l~g~~p~~~ 932 (1044)
|.+++++.- =+.+.+.+|.....|.+.+
T Consensus 189 ppel~~l~l~~~k~v~r~E~NPwv~pIaeQf 219 (264)
T KOG0617|consen 189 PPELANLDLVGNKQVMRMEENPWVNPIAEQF 219 (264)
T ss_pred ChhhhhhhhhhhHHHHhhhhCCCCChHHHHH
Confidence 666665532 2345556666665555544
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.46 E-value=2.7e-13 Score=162.33 Aligned_cols=127 Identities=34% Similarity=0.522 Sum_probs=98.3
Q ss_pred CCChHHHHHHHHHHHhcCcCCCCCccccCCCCCCCCCc----ccceeEeCCC-----CCeEEEeCCCCCccCccCCCCCc
Q 001612 28 GQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSNDCC----TWSGVDCDEA-----GRVIGLDLSEESISAGIDNSSPL 98 (1044)
Q Consensus 28 ~~~~~~~~~~ll~~k~~~~~~~~~~~~l~~W~~~~~~c----~w~gv~C~~~-----~~v~~L~L~~~~l~g~~~~~~~l 98 (1044)
..+.++|.+||+++|+++.. +. ..+|. +..|| .|.||.|+.. .+|+.|+|+++.+.|.++. .+
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~-~~----~~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~--~i 438 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGL-PL----RFGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN--DI 438 (623)
T ss_pred cccCchHHHHHHHHHHhcCC-cc----cCCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH--HH
Confidence 45677899999999999853 32 24896 34443 7999999531 2589999999988888764 78
Q ss_pred ccCCCCCcccCCCCCCCCCCCCCcCCCCCCCCEEEcCCCCCCCCCCccccCCCCCcEEecCCCCC
Q 001612 99 FSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNR 163 (1044)
Q Consensus 99 ~~l~~L~~LdLs~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~n~~ 163 (1044)
..+++|++|+|++|.+.+. +|..++.+++|++|+|++|.+.|.+|..++++++|++|++++|.+
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502 (623)
T ss_pred hCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence 8888888888888888776 788888888888888888888888888888777777777777654
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.16 E-value=4.3e-12 Score=130.92 Aligned_cols=242 Identities=24% Similarity=0.266 Sum_probs=129.1
Q ss_pred cccCCCCCcccCCCCCCCCC---CCCCcCCCCCCCCEEEcCCC---CCCCCCCcc-------ccCCCCCcEEecCCCCCC
Q 001612 98 LFSLKYLQSLNLAFNMFNAT---EIPSGLGSLTNLTNLNLSNA---GFAGQIPIQ-------VSGMTRLVTLDLSSLNRF 164 (1044)
Q Consensus 98 l~~l~~L~~LdLs~n~~~~~---~lp~~l~~l~~L~~L~Ls~~---~~~~~lp~~-------l~~l~~L~~L~ls~n~~~ 164 (1044)
+..+..+++++||+|.|... .+.+.+.+.++|+.-++|+- ....++|.. +-.+++|++||||.|-++
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 44556666777777766422 13344556667777777753 122234443 345667888888887764
Q ss_pred CCCcccCCCChhHHhhccccCceecCCCccCCCchhhhHHH-H--------hccCCCceEEecCCCCCCCCCc----ccc
Q 001612 165 GAPLKLENPNLSGLLQNLAELRELYLDGANISAPGIEWCQA-L--------SSLVPKLQVLSLSSCYLSGPIH----PSL 231 (1044)
Q Consensus 165 ~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~-l--------~~~~~~L~~L~Ls~n~l~~~~~----~~l 231 (1044)
... .+.+...+..+..|++|.|.+|.+...+...+.. + ....+.|+++...+|++..... ..|
T Consensus 106 ~~g----~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 106 PKG----IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred ccc----hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 432 3445666778888888888888877655444322 1 1112556666666665543322 233
Q ss_pred cCCCCCCEEECCCCCCCCC----ChHhhhCCCCCcEEEccCCCCCCC----cChhhcCCCCCCEEECCCCCCCCCCCCCC
Q 001612 232 AKLQSLSVIRLDQNDLLSP----VPEFLADFFNLTSLRLSHSRLNGT----FPEKILQVHTLETLDLSGNSLLQGSLPDF 303 (1044)
Q Consensus 232 ~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~ 303 (1044)
...+.|+.+.++.|.|... ....|..+++|+.|||.+|-++.. +...+..++
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~-------------------- 241 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP-------------------- 241 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc--------------------
Confidence 4445555555555544321 123344555555555555554422 112233334
Q ss_pred CCCCCCcEEEccCCcCCccCcccc-----cCCCCCCEEeccCccCCCC----CchhhcCCCCCcEEeCcCCcc
Q 001612 304 PKNSSLRTLMLSNTNFSGVLPDSI-----GNLKNLSRLDLALCYFDGS----IPTSLANLTQLVYLDLSFNKF 367 (1044)
Q Consensus 304 ~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l 367 (1044)
+|++|++++|.++......| ...++|++|.+.+|.++.. +...+...+.|+.|++++|.+
T Consensus 242 ----~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 242 ----HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ----hheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 44444444444443222111 1245667777777666532 222344567777777777776
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.10 E-value=5.5e-12 Score=137.49 Aligned_cols=56 Identities=23% Similarity=0.424 Sum_probs=41.1
Q ss_pred ceEEEccCCcccccCCcccCCCCCCCEEeCCCCCCcCCCccccc---CcCCCCEEeCCCCc
Q 001612 866 FTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIG---NLQQLESLDLSMNH 923 (1044)
Q Consensus 866 l~~LdLs~N~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~ip~~~~---~l~~L~~L~ls~N~ 923 (1044)
|..||+|+|+++ .||..|.+|+.|++|-|.+|.++ ..|..+. ...=-++|+..-.+
T Consensus 213 Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 213 LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 567888888888 78999999999999999999998 5666543 22334556655553
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.00 E-value=4.2e-11 Score=130.74 Aligned_cols=169 Identities=28% Similarity=0.378 Sum_probs=107.7
Q ss_pred EEccCCcCCcCCChhhhhccccceEEeccCCcccCcCccchhccCCCcEEEccCCcccccCChhHhhcccccceEECCCC
Q 001612 624 VDYSNNSFTSSIPDDIGNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGN 703 (1044)
Q Consensus 624 l~ls~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N 703 (1044)
.|++.|++. .+|..+.. +..|+.+.+..|.+. .+|..++++..|+.+||+.|+++ .+|..++.+ -|++|-+++|
T Consensus 80 aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l--pLkvli~sNN 153 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL--PLKVLIVSNN 153 (722)
T ss_pred hhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC--cceeEEEecC
Confidence 344444443 45554443 455666666666665 56666777777777777777776 677766665 3677777777
Q ss_pred cCcCccCCCCCCCCCccEEeCCCCCCcccCcccccCCCCCcEEECCCCccccCCChhhhcCCCCcEEEccCCccccCCCC
Q 001612 704 SLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISC 783 (1044)
Q Consensus 704 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i~~ 783 (1044)
+++ .+|..++....|..||.+.|.+. .+|..+.++.+|+.|.+..|++.. +|..+..+ .|..||++.|++.. |
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis~-i-- 226 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKISY-L-- 226 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCceee-c--
Confidence 765 34455556667777777777776 566667777777777777777653 34444533 36677777777653 2
Q ss_pred CCCCCCCCcccEEEcCCCcCCC
Q 001612 784 RENGDSWPKLQIVDLASNNFGG 805 (1044)
Q Consensus 784 ~~~~~~l~~L~~Ldls~N~l~g 805 (1044)
|..+..+..|++|-|.+|++..
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred chhhhhhhhheeeeeccCCCCC
Confidence 6667777777777777777754
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.98 E-value=8.3e-11 Score=121.62 Aligned_cols=260 Identities=22% Similarity=0.250 Sum_probs=153.9
Q ss_pred CcCCCCCCCCEEEcCCCCCCCC----CCccccCCCCCcEEecCCCCCCCCCcc--cCCCChhHHhhccccCceecCCCcc
Q 001612 121 SGLGSLTNLTNLNLSNAGFAGQ----IPIQVSGMTRLVTLDLSSLNRFGAPLK--LENPNLSGLLQNLAELRELYLDGAN 194 (1044)
Q Consensus 121 ~~l~~l~~L~~L~Ls~~~~~~~----lp~~l~~l~~L~~L~ls~n~~~~~~~~--~~~~~l~~~l~~l~~L~~L~l~~~~ 194 (1044)
+.+..+..+++++||+|.+... +...+.+.+.|+..+++.-.-+..... .....+..++..+++|++|+||+|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 3455678889999999988644 344566777888888876322111000 0011233456666777777777777
Q ss_pred CCCchhhhHHHHhccCCCceEEecCCCCCCCCCcccccCCCCCCEEECCCCCCCCCChHhhhCCCCCcEEEccCCCCCCC
Q 001612 195 ISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGT 274 (1044)
Q Consensus 195 l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 274 (1044)
+...+++.+..+.+.+..|++|.|.+|.+.-.....++. .|..|. . ....+.-++|+++....|++...
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~-------~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--V-------NKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--H-------HhccCCCcceEEEEeeccccccc
Confidence 777777766666555577777777777664221111111 000000 0 01112234455555555554321
Q ss_pred ----cChhhcCCCCCCEEECCCCCCCCCCC----CCCCCCCCCcEEEccCCcCCcc----CcccccCCCCCCEEeccCcc
Q 001612 275 ----FPEKILQVHTLETLDLSGNSLLQGSL----PDFPKNSSLRTLMLSNTNFSGV----LPDSIGNLKNLSRLDLALCY 342 (1044)
Q Consensus 275 ----~p~~l~~l~~L~~L~Ls~n~~~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~ 342 (1044)
+...+...+.|+.+.+..|.+....+ ..|..+++|+.|||.+|-++.. +...+..+++|++|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 11233444555555555555544333 1345577777777777776632 34466778899999999999
Q ss_pred CCCCCchhh-----cCCCCCcEEeCcCCcccCCCC-----cccCCCcccEEEccCCCCC
Q 001612 343 FDGSIPTSL-----ANLTQLVYLDLSFNKFVGPIP-----SLHMSKNLTHLDLSYNALP 391 (1044)
Q Consensus 343 l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~~-----~~~~~~~L~~L~L~~n~l~ 391 (1044)
+......+| ...++|++|.+.+|.++..-. .....+.|+.|++++|.+.
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 986554444 247899999999998863111 1112488999999999983
No 29
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.97 E-value=5e-10 Score=81.90 Aligned_cols=40 Identities=40% Similarity=0.763 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCcCCCCCccccCCCCCC--CCCcccceeEeC
Q 001612 32 SDQQSLLLQMKSSLVFNSSLSFRMVQWSQS--NDCCTWSGVDCD 73 (1044)
Q Consensus 32 ~~~~~~ll~~k~~~~~~~~~~~~l~~W~~~--~~~c~w~gv~C~ 73 (1044)
++|++||++||+++..++. +.+.+|+.. .+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~--~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPS--GVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC---CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccC--cccccCCCcCCCCCeeeccEEeC
Confidence 6899999999999986564 489999875 799999999996
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.5e-10 Score=122.84 Aligned_cols=191 Identities=23% Similarity=0.211 Sum_probs=102.1
Q ss_pred ccCCCCCCEEeccCccCCCCC--chhhcCCCCCcEEeCcCCcccCCCCccc--CCCcccEEEccCCCCCCCCCchhhhcC
Q 001612 327 IGNLKNLSRLDLALCYFDGSI--PTSLANLTQLVYLDLSFNKFVGPIPSLH--MSKNLTHLDLSYNALPGAISSTDWEHL 402 (1044)
Q Consensus 327 l~~l~~L~~L~Ls~n~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~i~~~~l~~l 402 (1044)
...|++++.|||+.|-+.... ......+++|+.|+++.|++........ ..+.|+.|.++.|.++..--......+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 344555555555555444221 1223455666666666665543322221 225666666666666522112224456
Q ss_pred CCccEEEeecCcCCCCCCcccCCCcccceeecCCcccCCCCCcccccCCCCCCEEEcCCCcCCCC-CCch-----hhcCC
Q 001612 403 SNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGP-IPMS-----IFDLR 476 (1044)
Q Consensus 403 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~p~~-----l~~l~ 476 (1044)
|+|+.|++..|............+..|++|+|++|.+...........++.|+.|+++.+.+... .|.. ...++
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence 77777777777432222333334566777777777665443323333456666666666666542 2222 23467
Q ss_pred CccEEEecCCcccCccchHHHHhCCCCCeEeCCCceeeeec
Q 001612 477 NLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNA 517 (1044)
Q Consensus 477 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 517 (1044)
+|+.|++..|++...-....+..+++|+.|.+..|.+....
T Consensus 302 kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 302 KLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET 342 (505)
T ss_pred cceeeecccCccccccccchhhccchhhhhhcccccccccc
Confidence 77777777777753333344555666666666666655433
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.95 E-value=1.1e-09 Score=125.84 Aligned_cols=102 Identities=31% Similarity=0.413 Sum_probs=53.9
Q ss_pred EEEccCCcccccCChhHhhcccccceEECCCCcCcCccCCCCCCC-CCccEEeCCCCCCcccCcccccCCCCCcEEECCC
Q 001612 672 VLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGN-CGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGN 750 (1044)
Q Consensus 672 ~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 750 (1044)
.++++.|++...+ ..+... +.++.|++.+|.++.+.+ ..... .+|+.|++++|++. .+|..+..++.|+.|++++
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~-~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLEL-TNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCc-hhhhcc-cceeEEecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 4555555553122 222222 445556666665554333 22222 25666666666666 4445566666777777777
Q ss_pred CccccCCChhhhcCCCCcEEEccCCccc
Q 001612 751 NKIRDTFPWWLENISSLRVLVLRSNSFY 778 (1044)
Q Consensus 751 N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 778 (1044)
|+++...+ ..+..+.|+.|++++|++.
T Consensus 173 N~l~~l~~-~~~~~~~L~~L~ls~N~i~ 199 (394)
T COG4886 173 NDLSDLPK-LLSNLSNLNNLDLSGNKIS 199 (394)
T ss_pred chhhhhhh-hhhhhhhhhheeccCCccc
Confidence 77664332 3335566666666666554
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.8e-10 Score=122.21 Aligned_cols=209 Identities=25% Similarity=0.190 Sum_probs=111.1
Q ss_pred cCCCCCCEEeccCccCCCCCc-hhhcCCCCCcEEeCcCCcccCCCCc---ccCCCcccEEEccCCCCCCCCCchhhhcCC
Q 001612 328 GNLKNLSRLDLALCYFDGSIP-TSLANLTQLVYLDLSFNKFVGPIPS---LHMSKNLTHLDLSYNALPGAISSTDWEHLS 403 (1044)
Q Consensus 328 ~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~~~L~~L~L~~n~l~~~i~~~~l~~l~ 403 (1044)
+++.+|++..|.++.+..... .....|++++.||++.|-+..-.+. ...+++|+.|+++.|.+.-......-..
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~-- 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL-- 195 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh--
Confidence 456677777777776652211 3566789999999999877642221 1223556666666665542222221223
Q ss_pred CccEEEeecCcCCCCCCcccCCCcccceeecCCcccCCCCCcccccCCCCCCEEEcCCCcCCCCCCchhhcCCCccEEEe
Q 001612 404 NLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILIL 483 (1044)
Q Consensus 404 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 483 (1044)
+++|+.|.++.|.++..--......+|+|+.|++..|............++.|++|+|
T Consensus 196 ----------------------l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL 253 (505)
T KOG3207|consen 196 ----------------------LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL 253 (505)
T ss_pred ----------------------hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence 3445555555554442111112223455555555555322222233344556667777
Q ss_pred cCCcccCccchHHHHhCCCCCeEeCCCceeeeecCCCC------CCCccccEEEccCCCCcCCCC---ccCCCCCcEEEC
Q 001612 484 SSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDS------SFPSQVRTLRLASCKLRVIPN---LKNQSKLFNLDL 554 (1044)
Q Consensus 484 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------~~~~~L~~L~L~~n~l~~l~~---l~~l~~L~~L~L 554 (1044)
++|++...-.....+.++.|+.|+++.+.+..+..... ...++|++|++..|++..++. +..+++|+.|.+
T Consensus 254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred cCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence 77666533333345666667777777666665443332 334466667777776665554 444455566666
Q ss_pred CCCcCC
Q 001612 555 SDNQIS 560 (1044)
Q Consensus 555 s~n~l~ 560 (1044)
..|.++
T Consensus 334 ~~n~ln 339 (505)
T KOG3207|consen 334 TLNYLN 339 (505)
T ss_pred cccccc
Confidence 666554
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.85 E-value=8.7e-10 Score=107.76 Aligned_cols=107 Identities=35% Similarity=0.389 Sum_probs=30.2
Q ss_pred cCCCcEEEccCCcccccCChhHhhcccccceEECCCCcCcCccCCCCCCCCCccEEeCCCCCCcccCcccc-cCCCCCcE
Q 001612 667 AKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSL-ANCRNLVV 745 (1044)
Q Consensus 667 l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~ 745 (1044)
+..+++|+|++|.|+ .|. .+...+.+|+.|++++|.++... .+..++.|++|++++|+++.. +..+ ..+++|+.
T Consensus 18 ~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred ccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence 334566666666665 232 23222245666666666665442 355566677777777776643 2233 34666777
Q ss_pred EECCCCccccCCC-hhhhcCCCCcEEEccCCccc
Q 001612 746 LDLGNNKIRDTFP-WWLENISSLRVLVLRSNSFY 778 (1044)
Q Consensus 746 L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~ 778 (1044)
|++++|++...-. ..+..+++|+.|+|.+|++.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 7777776654322 34556666666666666664
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.79 E-value=7.1e-09 Score=119.23 Aligned_cols=107 Identities=34% Similarity=0.433 Sum_probs=47.2
Q ss_pred hCCCCCcEEEccCCCCCCCcChhhcCCC-CCCEEECCCCCCCCCCCCCCCCCCCCcEEEccCCcCCccCcccccCCCCCC
Q 001612 256 ADFFNLTSLRLSHSRLNGTFPEKILQVH-TLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLS 334 (1044)
Q Consensus 256 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 334 (1044)
..++.++.|++.+|.++ .++....... +|+.|++++|++.... .....+++|+.|++++|+++ .+|...+..+.|+
T Consensus 113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~ 189 (394)
T COG4886 113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN 189 (394)
T ss_pred hcccceeEEecCCcccc-cCccccccchhhcccccccccchhhhh-hhhhccccccccccCCchhh-hhhhhhhhhhhhh
Confidence 33455555555555555 4444444442 5555555555433221 12223344444444444444 2232223444555
Q ss_pred EEeccCccCCCCCchhhcCCCCCcEEeCcCCc
Q 001612 335 RLDLALCYFDGSIPTSLANLTQLVYLDLSFNK 366 (1044)
Q Consensus 335 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 366 (1044)
.|++++|.+. .+|...+....|+++.+++|.
T Consensus 190 ~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 190 NLDLSGNKIS-DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred heeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence 5555555544 334333333444455554443
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.77 E-value=8.2e-09 Score=100.99 Aligned_cols=111 Identities=27% Similarity=0.328 Sum_probs=43.9
Q ss_pred HhCCCCCeEeCCCceeeeecCCCCCCCccccEEEccCCCCcCCCCccCCCCCcEEECCCCcCCCCCChhHh-hhcccccc
Q 001612 498 QRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVW-EIGNVSLQ 576 (1044)
Q Consensus 498 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~~~~~~L~ 576 (1044)
.+..++++|++.+|.|+.+.... ....+|+.|++++|.++.++.+..++.|++|++++|.|+. +++.+. .++ +|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~L~-~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp--~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIENLG-ATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISS-ISEGLDKNLP--NLQ 91 (175)
T ss_dssp --------------------S---TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S--CHHHHHH-T--T--
T ss_pred ccccccccccccccccccccchh-hhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCc-cccchHHhCC--cCC
Confidence 34445666666666666554322 2335788888888888888888889999999999999984 444443 333 599
Q ss_pred eeecccccccCccCCcccCCCCCCceEEcCCCcccC
Q 001612 577 YLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQG 612 (1044)
Q Consensus 577 ~L~Ls~N~l~~l~~~~~~~~l~~L~~L~l~~n~l~~ 612 (1044)
.|++++|++..+.....+..+++|+.|++.+|++..
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 999999999998877778889999999999999874
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.71 E-value=1e-08 Score=125.58 Aligned_cols=60 Identities=27% Similarity=0.239 Sum_probs=42.9
Q ss_pred CCCcccCCCCC--CCCCCCCCcCCCCCCCCEEEcCCCCCCCCCCccccCCCCCcEEecCCCCC
Q 001612 103 YLQSLNLAFNM--FNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNR 163 (1044)
Q Consensus 103 ~L~~LdLs~n~--~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~n~~ 163 (1044)
.|++|=+.+|. +... -+++|..++.|++|||++|.-.+.+|..|+.|.+||+|++++..+
T Consensus 546 ~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I 607 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI 607 (889)
T ss_pred ccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc
Confidence 57777777664 3221 234577788888888888777778888888888888888887654
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.70 E-value=4.3e-09 Score=106.05 Aligned_cols=132 Identities=35% Similarity=0.471 Sum_probs=82.5
Q ss_pred CCCCEEEcCCCcCCCCCCchhhcCCCccEEEecCCcccCccchHHHHhCCCCCeEeCCCceeeeecCCCCCCCccccEEE
Q 001612 452 SALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLR 531 (1044)
Q Consensus 452 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 531 (1044)
..|+++|+++|.++ .+..+..-.+.++.|++++|.+. .+. .+..+++|+.||+++|.++.+.++.... -++++|.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KL-GNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLAECVGWHLKL-GNIKTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh--hhhhcccceEeecccchhHhhhhhHhhh-cCEeeee
Confidence 34666777777666 45555666677777777777775 332 2667777777777777776655543222 2455555
Q ss_pred ccCCCCcCCCCccCCCCCcEEECCCCcCCCCCChhHhhhcccccceeecccccccCccCCcccCCCCCCceEEcCCCccc
Q 001612 532 LASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQ 611 (1044)
Q Consensus 532 L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~l~~n~l~ 611 (1044)
+++|.+..+..+..+-+|..||+++| ++..+.....++++|.|+.+.+.+|++.
T Consensus 359 La~N~iE~LSGL~KLYSLvnLDl~~N--------------------------~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 359 LAQNKIETLSGLRKLYSLVNLDLSSN--------------------------QIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhhHhhhhhhHhhhhheecccccc--------------------------chhhHHHhcccccccHHHHHhhcCCCcc
Confidence 55555555554444444555555444 4444444455778888999999999887
Q ss_pred CCC
Q 001612 612 GNI 614 (1044)
Q Consensus 612 ~~~ 614 (1044)
+..
T Consensus 413 ~~v 415 (490)
T KOG1259|consen 413 GSV 415 (490)
T ss_pred ccc
Confidence 543
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.69 E-value=1.4e-08 Score=124.36 Aligned_cols=105 Identities=27% Similarity=0.303 Sum_probs=55.7
Q ss_pred CCceEEecCCCC--CCCCCcccccCCCCCCEEECCCCCCCCCChHhhhCCCCCcEEEccCCCCCCCcChhhcCCCCCCEE
Q 001612 211 PKLQVLSLSSCY--LSGPIHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETL 288 (1044)
Q Consensus 211 ~~L~~L~Ls~n~--l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 288 (1044)
+.|++|-+..|. +.....+.|..++.|++|||++|.-.+.+|+.++++-+||+|+++++.+. .+|..++++..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 445555555553 33333334555666666666665555556666666666666666666655 556666666666666
Q ss_pred ECCCCCCCCCCCCCCCCCCCCcEEEccC
Q 001612 289 DLSGNSLLQGSLPDFPKNSSLRTLMLSN 316 (1044)
Q Consensus 289 ~Ls~n~~~~~~~~~~~~l~~L~~L~L~~ 316 (1044)
++..+............+++|++|.+..
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ccccccccccccchhhhcccccEEEeec
Confidence 6655543322222222244455544443
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=8.5e-10 Score=111.21 Aligned_cols=161 Identities=22% Similarity=0.236 Sum_probs=106.6
Q ss_pred CCCCcccCCCCCCCCCCCCCcCCCCCCCCEEEcCCCCCCCCCCccccCCCCCcEEecCCCCCCCCCcccCCCChhHHhhc
Q 001612 102 KYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQN 181 (1044)
Q Consensus 102 ~~L~~LdLs~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~l~~~l~~ 181 (1044)
+.|++||||...++...+-..+..|.+|+.|.|.++.+.+.+-..|++-.+|+.|+++.+.- +......-.+.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG------~t~n~~~ll~~s 258 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSG------FTENALQLLLSS 258 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccc------cchhHHHHHHHh
Confidence 35899999998887665556678899999999999999988888999999999999998642 223445566888
Q ss_pred cccCceecCCCccCCCchhhhHHHHhccCCCceEEecCCCCCC---CCCcccccCCCCCCEEECCCCC-CCCCChHhhhC
Q 001612 182 LAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLS---GPIHPSLAKLQSLSVIRLDQND-LLSPVPEFLAD 257 (1044)
Q Consensus 182 l~~L~~L~l~~~~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~---~~~~~~l~~l~~L~~L~Ls~n~-~~~~~~~~l~~ 257 (1044)
++.|++|+++++.+....... .+.+.-++|+.|++++++-. ..+..-..++++|.+|||++|. +.......|.+
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv--~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTV--AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred hhhHhhcCchHhhccchhhhH--HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence 999999999998776544322 22333367888888876422 1111222445566666665553 22222233445
Q ss_pred CCCCcEEEccCCC
Q 001612 258 FFNLTSLRLSHSR 270 (1044)
Q Consensus 258 l~~L~~L~L~~n~ 270 (1044)
++.|++|.++.|.
T Consensus 337 f~~L~~lSlsRCY 349 (419)
T KOG2120|consen 337 FNYLQHLSLSRCY 349 (419)
T ss_pred cchheeeehhhhc
Confidence 5555555555554
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.65 E-value=8.7e-09 Score=103.90 Aligned_cols=128 Identities=30% Similarity=0.389 Sum_probs=67.6
Q ss_pred CCccEEEeecCcCCCCCCcccCCCcccceeecCCcccCCCCCcccccCCCCCCEEEcCCCcCCCCCCchhhcCCCccEEE
Q 001612 403 SNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILI 482 (1044)
Q Consensus 403 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 482 (1044)
..|+++||++|.++ .+..+..-.|.++.|+++.|.+...-. .+.+++|+.||+++|.++ .+..+=..+-+.+.|.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n---La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN---LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh---hhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 34555566655555 333444445555555555555442211 112445555555555554 3333334455556666
Q ss_pred ecCCcccCccchHHHHhCCCCCeEeCCCceeeeecCCCCCCCccccEEEccCCCCcCCC---CccCCCCCcEEECCCCcC
Q 001612 483 LSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIP---NLKNQSKLFNLDLSDNQI 559 (1044)
Q Consensus 483 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~l~---~l~~l~~L~~L~Ls~n~l 559 (1044)
|++|.+. ....++++-+|..| ++++|+|..+. .+++++-|+.+.+.+|++
T Consensus 359 La~N~iE---~LSGL~KLYSLvnL------------------------Dl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 359 LAQNKIE---TLSGLRKLYSLVNL------------------------DLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhhHh---hhhhhHhhhhheec------------------------cccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 6666553 11234444444444 44444444333 377888889999999988
Q ss_pred CCC
Q 001612 560 SGE 562 (1044)
Q Consensus 560 ~~~ 562 (1044)
.+.
T Consensus 412 ~~~ 414 (490)
T KOG1259|consen 412 AGS 414 (490)
T ss_pred ccc
Confidence 743
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.64 E-value=4.8e-09 Score=120.58 Aligned_cols=245 Identities=27% Similarity=0.264 Sum_probs=151.9
Q ss_pred cccceEEeccCCcccCcCccchhccCCCcEEEccCCcccccCChhHhhcccccceEECCCCcCcCccCCCCCCCCCccEE
Q 001612 643 VSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTL 722 (1044)
Q Consensus 643 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 722 (1044)
+..++.+.+..|.+.. +-..++.+++|+.|++.+|+|. .+...+..+ ++|++|++++|.|+.+.+ +..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~-~~L~~L~ls~N~I~~i~~--l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSL-VNLQVLDLSFNKITKLEG--LSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhh-hcchheeccccccccccc--hhhccchhhh
Confidence 3445555566666653 2233566777888888888877 333323333 677788888887776543 4445567888
Q ss_pred eCCCCCCcccCcccccCCCCCcEEECCCCccccCCC-hhhhcCCCCcEEEccCCccccCCCCCCCCCCCCcccEEEcCCC
Q 001612 723 DLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFP-WWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASN 801 (1044)
Q Consensus 723 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~g~i~~~~~~~~l~~L~~Ldls~N 801 (1044)
++++|.++. ...+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+.. ...+..+..+..+++..|
T Consensus 146 ~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~----i~~~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 146 NLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE----IEGLDLLKKLVLLSLLDN 218 (414)
T ss_pred eeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc----ccchHHHHHHHHhhcccc
Confidence 888888763 2335557778888888888776655 3 4667777777777776642 233344444444555555
Q ss_pred cCCCcCChhhHhhhhhcccchhhhcccccccccccccccccccccceEEeecCchhhHhhhcC--cceEEEccCCccccc
Q 001612 802 NFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILS--IFTSIDFSRNNFDGP 879 (1044)
Q Consensus 802 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~l~~LdLs~N~l~g~ 879 (1044)
.++-.-+.. .+. .++.+++++|.+. .
T Consensus 219 ~i~~~~~l~---------------------------------------------------~~~~~~L~~l~l~~n~i~-~ 246 (414)
T KOG0531|consen 219 KISKLEGLN---------------------------------------------------ELVMLHLRELYLSGNRIS-R 246 (414)
T ss_pred cceeccCcc---------------------------------------------------cchhHHHHHHhcccCccc-c
Confidence 553211100 011 2567777888777 3
Q ss_pred CCcccCCCCCCCEEeCCCCCCcCCCcccccCcCCCCEEeCCCCccccc---cCcc-ccCCCCCcEEECcCCcccccCC
Q 001612 880 IPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQ---IPIQ-LANLTFLSFLNLSHNNLVGKIP 953 (1044)
Q Consensus 880 ip~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~g~---~p~~-~~~l~~L~~l~l~~N~l~g~ip 953 (1044)
+|..+..+..+..|++++|++... ..+...+.+..+..+.|.+... .... ....+.+..+.+.+|+.....+
T Consensus 247 ~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 247 SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 445667778888888888887743 2244556677777777776522 1222 4566778888888888777665
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.61 E-value=2.4e-08 Score=80.12 Aligned_cols=59 Identities=37% Similarity=0.469 Sum_probs=31.0
Q ss_pred ccceEECCCCcCcCccCCCCCCCCCccEEeCCCCCCcccCcccccCCCCCcEEECCCCc
Q 001612 694 ILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNK 752 (1044)
Q Consensus 694 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 752 (1044)
+|++|++++|+++.+.++.|.++++|++|++++|+++...|.+|.++++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34455555555554444555555555555555555554444555555555555555554
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.60 E-value=2.5e-08 Score=80.01 Aligned_cols=59 Identities=46% Similarity=0.630 Sum_probs=30.9
Q ss_pred CCCEEeCCCCCCcCCCcccccCcCCCCEEeCCCCccccccCccccCCCCCcEEECcCCc
Q 001612 889 SLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNN 947 (1044)
Q Consensus 889 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~ 947 (1044)
+|+.|++++|+++...+..|.++++|++||+++|+++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34455555555553333445555555555555555555445555555555555555554
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.48 E-value=2.2e-08 Score=115.13 Aligned_cols=270 Identities=27% Similarity=0.248 Sum_probs=145.0
Q ss_pred CCccEEEecCCcccCccchHHHHhCCCCCeEeCCCceeeeecCCCCCCCccccEEEccCCCCcCCCC-ccCCCCCcEEEC
Q 001612 476 RNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPN-LKNQSKLFNLDL 554 (1044)
Q Consensus 476 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~l~~-l~~l~~L~~L~L 554 (1044)
+.++.++...+...+. ... ...+..++.+.+..|.+..+.. ......+++.+++.+|++..+.. +..+++|+.|++
T Consensus 49 ~~~~~~~~~~~~~~~~-~~~-~~~l~~l~~l~l~~n~i~~~~~-~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~l 125 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSD-EDL-VESLTSLKELNLRQNLIAKILN-HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDL 125 (414)
T ss_pred chhhhhcchhccccch-hhh-HHHhHhHHhhccchhhhhhhhc-ccccccceeeeeccccchhhcccchhhhhcchheec
Confidence 3445555555543311 111 1445566666666666654211 12233456666666666666666 666666666666
Q ss_pred CCCcCCCCCChhHhhhcccccceeecccccccCccCCcccCCCCCCceEEcCCCcccCCCCCCCCCCcEEEccCCcCCcC
Q 001612 555 SDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSS 634 (1044)
Q Consensus 555 s~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~ls~n~~~~~ 634 (1044)
++|.|+...+-. .+. .|+.|++++|.++.+... ..
T Consensus 126 s~N~I~~i~~l~--~l~--~L~~L~l~~N~i~~~~~~---~~-------------------------------------- 160 (414)
T KOG0531|consen 126 SFNKITKLEGLS--TLT--LLKELNLSGNLISDISGL---ES-------------------------------------- 160 (414)
T ss_pred cccccccccchh--hcc--chhhheeccCcchhccCC---cc--------------------------------------
Confidence 666665332211 111 144444444444443221 11
Q ss_pred CChhhhhccccceEEeccCCcccCcCc-cchhccCCCcEEEccCCcccccCChhHhhcccccceEECCCCcCcCccCCCC
Q 001612 635 IPDDIGNFVSFTLFFSLSNNSITGVIP-ETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTF 713 (1044)
Q Consensus 635 ~p~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~~ 713 (1044)
+..++.+++++|.++..-+ . ...+.+++.+++++|.+.. +. .+... ..+..+++..|.++..-+...
T Consensus 161 --------l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~-i~-~~~~~-~~l~~~~l~~n~i~~~~~l~~ 228 (414)
T KOG0531|consen 161 --------LKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE-IE-GLDLL-KKLVLLSLLDNKISKLEGLNE 228 (414)
T ss_pred --------chhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc-cc-chHHH-HHHHHhhcccccceeccCccc
Confidence 3444444555555543333 2 3556677777777777652 22 12221 345555777777765433221
Q ss_pred CCCCCccEEeCCCCCCcccCcccccCCCCCcEEECCCCccccCCChhhhcCCCCcEEEccCCccccCCCCCC--CCCCCC
Q 001612 714 PGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRE--NGDSWP 791 (1044)
Q Consensus 714 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i~~~~--~~~~l~ 791 (1044)
.....|+.+++++|++. ..+..+..+..+..|++.+|++...-. +...+.+..+....|++........ .....+
T Consensus 229 ~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (414)
T KOG0531|consen 229 LVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLALSEAISQEYITSAAP 305 (414)
T ss_pred chhHHHHHHhcccCccc-cccccccccccccccchhhcccccccc--ccccchHHHhccCcchhcchhhhhccccccccc
Confidence 11113788888888887 344667777888888888888765433 3445566667777776643221122 255667
Q ss_pred cccEEEcCCCcCCCcCC
Q 001612 792 KLQIVDLASNNFGGRVP 808 (1044)
Q Consensus 792 ~L~~Ldls~N~l~g~ip 808 (1044)
.++.+.+..|......+
T Consensus 306 ~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 306 TLVTLTLELNPIRKISS 322 (414)
T ss_pred cccccccccCccccccc
Confidence 77778888777765443
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=7e-09 Score=104.75 Aligned_cols=144 Identities=22% Similarity=0.300 Sum_probs=68.3
Q ss_pred CcccceeEeCCCCCeEEEeCCCCCccCccCCCCCcccCC--CCCcccCCCCCCCCCCCCCcCCCC-CCCCEEEcCCCCCC
Q 001612 64 CCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSPLFSLK--YLQSLNLAFNMFNATEIPSGLGSL-TNLTNLNLSNAGFA 140 (1044)
Q Consensus 64 ~c~w~gv~C~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~--~L~~LdLs~n~~~~~~lp~~l~~l-~~L~~L~Ls~~~~~ 140 (1044)
|=+|.|..-|. .--+.+|+.+..+.. .++.++. ....+.+.........+.+.+.-+ ..|++||||+..++
T Consensus 125 C~Rfyr~~~de-~lW~~lDl~~r~i~p-----~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it 198 (419)
T KOG2120|consen 125 CKRFYRLASDE-SLWQTLDLTGRNIHP-----DVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVIT 198 (419)
T ss_pred HHHHhhccccc-cceeeeccCCCccCh-----hHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhhee
Confidence 44688776654 456778888876652 1333332 122233332222221122222222 35777777776654
Q ss_pred CC-CCccccCCCCCcEEecCCCCCCCCCcccCCCChhHHhhccccCceecCCCcc-CCCchhhhHHHHhccCCCceEEec
Q 001612 141 GQ-IPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGAN-ISAPGIEWCQALSSLVPKLQVLSL 218 (1044)
Q Consensus 141 ~~-lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~~~~~L~~L~L 218 (1044)
-. +-.-++.|++|+.|.+.++++ +..+...+++-.+|+.|+++++. +++.+.. -+.+.|..|..|++
T Consensus 199 ~stl~~iLs~C~kLk~lSlEg~~L--------dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~---ll~~scs~L~~LNl 267 (419)
T KOG2120|consen 199 VSTLHGILSQCSKLKNLSLEGLRL--------DDPIVNTIAKNSNLVRLNLSMCSGFTENALQ---LLLSSCSRLDELNL 267 (419)
T ss_pred HHHHHHHHHHHHhhhhcccccccc--------CcHHHHHHhccccceeeccccccccchhHHH---HHHHhhhhHhhcCc
Confidence 22 122345566666666666554 12234445555566666666542 3332221 12222355555555
Q ss_pred CCCCCC
Q 001612 219 SSCYLS 224 (1044)
Q Consensus 219 s~n~l~ 224 (1044)
+.|.+.
T Consensus 268 sWc~l~ 273 (419)
T KOG2120|consen 268 SWCFLF 273 (419)
T ss_pred hHhhcc
Confidence 555443
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.29 E-value=2.3e-07 Score=92.81 Aligned_cols=168 Identities=22% Similarity=0.227 Sum_probs=98.0
Q ss_pred HHhhccccCceecCCCccCCCchhhhHHHHhccCCCceEEecCCCC---CCCCCc-------ccccCCCCCCEEECCCCC
Q 001612 177 GLLQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCY---LSGPIH-------PSLAKLQSLSVIRLDQND 246 (1044)
Q Consensus 177 ~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~---l~~~~~-------~~l~~l~~L~~L~Ls~n~ 246 (1044)
..+..+..+.+++++||.+.....+|++.......+|+..++++-- ....++ .++.+|++|+..+||+|.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 3355577888888888888887777776554444778888777532 111222 345788999999999998
Q ss_pred CCCCChH----hhhCCCCCcEEEccCCCCCCCcChhhc-------------CCCCCCEEECCCCCCCCCCCCC----CCC
Q 001612 247 LLSPVPE----FLADFFNLTSLRLSHSRLNGTFPEKIL-------------QVHTLETLDLSGNSLLQGSLPD----FPK 305 (1044)
Q Consensus 247 ~~~~~~~----~l~~l~~L~~L~L~~n~l~~~~p~~l~-------------~l~~L~~L~Ls~n~~~~~~~~~----~~~ 305 (1044)
+....|+ .++..+.|++|.+++|.+...--..++ +-+.|++.+...|++..++..- +..
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s 183 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence 8776664 456678899999999976422112222 2355666666666554443321 111
Q ss_pred CCCCcEEEccCCcCCccC-----cccccCCCCCCEEeccCccCC
Q 001612 306 NSSLRTLMLSNTNFSGVL-----PDSIGNLKNLSRLDLALCYFD 344 (1044)
Q Consensus 306 l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~Ls~n~l~ 344 (1044)
-..|+++.+..|.|.-.. -..+..+.+|+.||+.+|.++
T Consensus 184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 234555555555443110 011233445555555555444
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.15 E-value=1.2e-07 Score=106.97 Aligned_cols=200 Identities=26% Similarity=0.268 Sum_probs=133.7
Q ss_pred CCCCcEEEccCCcCCccC-cccccCCCCCCEEeccCccCCCCCchhhcC-CCCCcEEeCcCCccc----------CCCCc
Q 001612 306 NSSLRTLMLSNTNFSGVL-PDSIGNLKNLSRLDLALCYFDGSIPTSLAN-LTQLVYLDLSFNKFV----------GPIPS 373 (1044)
Q Consensus 306 l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~----------~~~~~ 373 (1044)
+++++.|.+-.-.-.+.. |-.+..+.+|++|.+.++.+.. ...+.. -..|++|-..+ .+. |.+..
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN-SLDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhcccccc
Confidence 344455544333222222 5567788899999999998763 111111 12344443221 111 12222
Q ss_pred ccCCCcccEEEccCCCCCCCCCchhhhcCCCccEEEeecCcCCCCCCcccCCCcccceeecCCcccCCCCCcccccCCCC
Q 001612 374 LHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSA 453 (1044)
Q Consensus 374 ~~~~~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 453 (1044)
...-..|...+.+.|.+. .+ ...+.-++.|+.|+|+.|+++.. +.+..|++|++|||+.|.+.. +|.+....+ +
T Consensus 160 s~~Wn~L~~a~fsyN~L~-~m-D~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~ 233 (1096)
T KOG1859|consen 160 SPVWNKLATASFSYNRLV-LM-DESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-K 233 (1096)
T ss_pred chhhhhHhhhhcchhhHH-hH-HHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhh-h
Confidence 112246788888888875 33 33478889999999999999853 378889999999999999874 454444333 4
Q ss_pred CCEEEcCCCcCCCCCCchhhcCCCccEEEecCCcccCccchHHHHhCCCCCeEeCCCceeeee
Q 001612 454 LDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVN 516 (1044)
Q Consensus 454 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 516 (1044)
|+.|.+++|.++.. ..+.++.+|+.||+++|-+.+.-....+..+..|+.|+|.+|++-.-
T Consensus 234 L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 99999999988732 35778999999999999888776667778888899999999987643
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.10 E-value=2.9e-07 Score=103.81 Aligned_cols=128 Identities=33% Similarity=0.368 Sum_probs=103.7
Q ss_pred CCCCEEEcCCCcCCCCCCchhhcCCCccEEEecCCcccCccchHHHHhCCCCCeEeCCCceeeeecCCCCCCCccccEEE
Q 001612 452 SALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDSSFPSQVRTLR 531 (1044)
Q Consensus 452 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 531 (1044)
..|...+.+.|.+. .+..++.-++.++.|+|++|+++ .+ +.+..|++|++|||++|.++.++......+ .|..|.
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hh--HHHHhcccccccccccchhccccccchhhh-hheeee
Confidence 35777788888887 66677888899999999999987 33 368999999999999999998877665555 499999
Q ss_pred ccCCCCcCCCCccCCCCCcEEECCCCcCCCCCC-hhHhhhcccccceeeccccccc
Q 001612 532 LASCKLRVIPNLKNQSKLFNLDLSDNQISGEIP-NWVWEIGNVSLQYLNLSHNLLS 586 (1044)
Q Consensus 532 L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~~~~~~L~~L~Ls~N~l~ 586 (1044)
+++|.++.+-.+.++.+|+.||+++|-+.+--. ..+|.+. .|+.|.|.+|.+-
T Consensus 239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs--~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLS--SLIVLWLEGNPLC 292 (1096)
T ss_pred ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHH--HHHHHhhcCCccc
Confidence 999999999999999999999999998875321 1233333 3888899998774
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=1.3e-06 Score=88.59 Aligned_cols=62 Identities=24% Similarity=0.286 Sum_probs=28.7
Q ss_pred cCCCCCCEEECCCCCCCCCChHhhhCCCCCcEEEccCCCCCCC-cChhhcCCCCCCEEECCCC
Q 001612 232 AKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGT-FPEKILQVHTLETLDLSGN 293 (1044)
Q Consensus 232 ~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n 293 (1044)
.+++.|+.|+++.|.+...+...-....+|++|-|.+..+.-. ....+..++.++.|.++.|
T Consensus 94 e~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 94 EQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred hcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 3444444444444444333222113345566666665554321 2233445566666666655
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.02 E-value=1.9e-07 Score=83.71 Aligned_cols=86 Identities=28% Similarity=0.459 Sum_probs=49.7
Q ss_pred cceEEEccCCcccccCCcccC-CCCCCCEEeCCCCCCcCCCcccccCcCCCCEEeCCCCccccccCccccCCCCCcEEEC
Q 001612 865 IFTSIDFSRNNFDGPIPEEIG-RLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNL 943 (1044)
Q Consensus 865 ~l~~LdLs~N~l~g~ip~~~~-~L~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l 943 (1044)
.++.++||+|.|... |+.|. ..+.++.|||++|.++ .+|.++..++.|+.|+++.|.+. ..|..+..|.+|..|+.
T Consensus 54 el~~i~ls~N~fk~f-p~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKF-PKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhhhC-CHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 355566666666633 33333 3345666666666666 56666666666666666666666 34444555666666666
Q ss_pred cCCcccccCCC
Q 001612 944 SHNNLVGKIPI 954 (1044)
Q Consensus 944 ~~N~l~g~ip~ 954 (1044)
.+|... +||.
T Consensus 131 ~~na~~-eid~ 140 (177)
T KOG4579|consen 131 PENARA-EIDV 140 (177)
T ss_pred CCCccc-cCcH
Confidence 665543 4443
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.97 E-value=7.1e-06 Score=82.38 Aligned_cols=158 Identities=20% Similarity=0.225 Sum_probs=90.9
Q ss_pred CCceEEecCCCCCCCCCccc----ccCCCCCCEEECCCCCCCCCChHhh-------------hCCCCCcEEEccCCCCCC
Q 001612 211 PKLQVLSLSSCYLSGPIHPS----LAKLQSLSVIRLDQNDLLSPVPEFL-------------ADFFNLTSLRLSHSRLNG 273 (1044)
Q Consensus 211 ~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~Ls~n~~~~~~~~~l-------------~~l~~L~~L~L~~n~l~~ 273 (1044)
|+|+..+||+|.+....|+. ++.-+.|++|.+++|.+...-...+ .+-|.|++.....|++.
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle- 170 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE- 170 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-
Confidence 66666666666665444432 3445666666666665432211111 23466777777777665
Q ss_pred CcChh-----hcCCCCCCEEECCCCCCCCCCCCC-----CCCCCCCcEEEccCCcCCccC----cccccCCCCCCEEecc
Q 001612 274 TFPEK-----ILQVHTLETLDLSGNSLLQGSLPD-----FPKNSSLRTLMLSNTNFSGVL----PDSIGNLKNLSRLDLA 339 (1044)
Q Consensus 274 ~~p~~-----l~~l~~L~~L~Ls~n~~~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls 339 (1044)
..|.. +..-.+|+++.+..|.+....+.. +..+.+|+.|++.+|-++-.. ...+...+.|++|.+.
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 22211 222246777777777665544332 223678888888888776332 2344556678889998
Q ss_pred CccCCCCCchhhc------CCCCCcEEeCcCCcccC
Q 001612 340 LCYFDGSIPTSLA------NLTQLVYLDLSFNKFVG 369 (1044)
Q Consensus 340 ~n~l~~~~p~~l~------~l~~L~~L~L~~n~l~~ 369 (1044)
+|-++.....++- ..++|..|...+|...+
T Consensus 251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred chhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 8887754443321 24666777776665543
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.94 E-value=7.3e-07 Score=94.93 Aligned_cols=276 Identities=20% Similarity=0.207 Sum_probs=123.1
Q ss_pred CCCcccCCCCCCCCC-CCCCcCCCCCCCCEEEcCCCCCC-CCCCccc-cCCCCCcEEecCCCCCCCCCcccCCCChhHHh
Q 001612 103 YLQSLNLAFNMFNAT-EIPSGLGSLTNLTNLNLSNAGFA-GQIPIQV-SGMTRLVTLDLSSLNRFGAPLKLENPNLSGLL 179 (1044)
Q Consensus 103 ~L~~LdLs~n~~~~~-~lp~~l~~l~~L~~L~Ls~~~~~-~~lp~~l-~~l~~L~~L~ls~n~~~~~~~~~~~~~l~~~l 179 (1044)
.||.|.+.++.-.+. .+-..-.+++++++|++.+|... +..-.++ ..+++|++|++..|.. +....+....
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~------iT~~~Lk~la 212 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSS------ITDVSLKYLA 212 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccch------hHHHHHHHHH
Confidence 456666665532221 12223346666666666666421 1111222 2566667766665421 1111222334
Q ss_pred hccccCceecCCCcc-CCCchhhhHHHHhccCCCceEEecCCCCCCCCCcccc----cCCCCCCEEECCCCCCCCCChHh
Q 001612 180 QNLAELRELYLDGAN-ISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPSL----AKLQSLSVIRLDQNDLLSPVPEF 254 (1044)
Q Consensus 180 ~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l----~~l~~L~~L~Ls~n~~~~~~~~~ 254 (1044)
..+++|++++++++. +++.+.+.+. +-+..++.+.+++|.=.+ ...+ +.+..+.++++..+.......-+
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~---rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~ 287 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQ---RGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLW 287 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHh---ccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHH
Confidence 556666777666662 3433322211 111334444444432111 1111 12233444444444222211111
Q ss_pred --hhCCCCCcEEEccCCCCCCC-cChhh-cCCCCCCEEECCCCCC-CCCCCCCCC-CCCCCcEEEccCCcCC--ccCccc
Q 001612 255 --LADFFNLTSLRLSHSRLNGT-FPEKI-LQVHTLETLDLSGNSL-LQGSLPDFP-KNSSLRTLMLSNTNFS--GVLPDS 326 (1044)
Q Consensus 255 --l~~l~~L~~L~L~~n~l~~~-~p~~l-~~l~~L~~L~Ls~n~~-~~~~~~~~~-~l~~L~~L~L~~n~l~--~~~p~~ 326 (1044)
-..+..|+.|+.+++...+. .-.++ .+.++|+.|.++.|+. .+..+..+. .++.|+.+++.++... +.+...
T Consensus 288 ~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl 367 (483)
T KOG4341|consen 288 LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL 367 (483)
T ss_pred HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh
Confidence 12345566666655532211 11222 2456666666666542 122222222 2566666666665432 112222
Q ss_pred ccCCCCCCEEeccCccCCCCC-----chhhcCCCCCcEEeCcCCcccC--CCCcccCCCcccEEEccCCC
Q 001612 327 IGNLKNLSRLDLALCYFDGSI-----PTSLANLTQLVYLDLSFNKFVG--PIPSLHMSKNLTHLDLSYNA 389 (1044)
Q Consensus 327 l~~l~~L~~L~Ls~n~l~~~~-----p~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~~~L~~L~L~~n~ 389 (1044)
-.+++.|++|.+++|...... ...-..+..|+.+.+++++... .......+++|+.+++.+++
T Consensus 368 s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 368 SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 245667777777766532111 1112345567777777776532 22233344677777776665
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.92 E-value=7.5e-06 Score=98.13 Aligned_cols=145 Identities=15% Similarity=0.212 Sum_probs=93.7
Q ss_pred cccCceecCCCccCCCchhhhHHHHhccCCCceEEecCCCCCCCC-CcccccCCCCCCEEECCCCCCCCCChHhhhCCCC
Q 001612 182 LAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGP-IHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFN 260 (1044)
Q Consensus 182 l~~L~~L~l~~~~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~ 260 (1044)
-++|++|+++|... ....|...++.++|+|+.|.+++-.+... ......++++|..||+|+.+++.. ..++++++
T Consensus 121 r~nL~~LdI~G~~~--~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGSEL--FSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKN 196 (699)
T ss_pred HHhhhhcCccccch--hhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhcccc
Confidence 36788898888543 35678888888889999999888665432 223345778888888888877665 56777888
Q ss_pred CcEEEccCCCCCC-CcChhhcCCCCCCEEECCCCCCCCCCCCCCCCCCCCcEEEccCCcCCccCcccccCCCCCCEEecc
Q 001612 261 LTSLRLSHSRLNG-TFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLSRLDLA 339 (1044)
Q Consensus 261 L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 339 (1044)
|+.|.+.+=.+.. ..-..+.++++|++||+|..+..... .+....-+.-..+|+|+.||.|
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~------------------~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT------------------KIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch------------------HHHHHHHHhcccCccccEEecC
Confidence 8888877766552 22345677788888887765432211 0010111122346777788877
Q ss_pred CccCCCCCc
Q 001612 340 LCYFDGSIP 348 (1044)
Q Consensus 340 ~n~l~~~~p 348 (1044)
+..+...+-
T Consensus 259 gTdi~~~~l 267 (699)
T KOG3665|consen 259 GTDINEEIL 267 (699)
T ss_pred CcchhHHHH
Confidence 776664443
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.69 E-value=0.00014 Score=80.10 Aligned_cols=75 Identities=16% Similarity=0.259 Sum_probs=43.9
Q ss_pred hhccCCCcEEEccCCcccccCChhHhhcccccceEECCCCcCcCccCCCCCCCCCccEEeCCCC-CCcccCcccccCCCC
Q 001612 664 LCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGN-QLGGTVPKSLANCRN 742 (1044)
Q Consensus 664 l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~ 742 (1044)
+..+..++.|++++|.++ .+| .++.+|++|+++++.-...+|+.++ .+|+.|++++| .+. .+|. +
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------S 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------c
Confidence 444567778888888776 566 2345677777776544444554443 46677777766 333 3442 3
Q ss_pred CcEEECCCCc
Q 001612 743 LVVLDLGNNK 752 (1044)
Q Consensus 743 L~~L~Ls~N~ 752 (1044)
|+.|+++.|.
T Consensus 114 Le~L~L~~n~ 123 (426)
T PRK15386 114 VRSLEIKGSA 123 (426)
T ss_pred cceEEeCCCC
Confidence 5555555444
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=1e-05 Score=82.31 Aligned_cols=185 Identities=21% Similarity=0.262 Sum_probs=95.6
Q ss_pred CCCccEEEeecCcCCC--CCCcccCCCcccceeecCCcccCCCCCcccccCCCCCCEEEcCCCcCCCCCCchhhcCCCcc
Q 001612 402 LSNLVYVDLRYNSLNG--SIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLK 479 (1044)
Q Consensus 402 l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 479 (1044)
++.++.+||.+|.++. .+..-+.++|.|+.|+++.|.+...+.... ....+|+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-------------------------~p~~nl~ 124 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-------------------------LPLKNLR 124 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-------------------------ccccceE
Confidence 4556666666666653 122223345555555555555443332221 2345666
Q ss_pred EEEecCCcccCccchHHHHhCCCCCeEeCCCceeeee---cCCCCCCCccccEEEccCCCCcCCC---C-ccCCCCCcEE
Q 001612 480 ILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVN---AGSDSSFPSQVRTLRLASCKLRVIP---N-LKNQSKLFNL 552 (1044)
Q Consensus 480 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~~~~L~~L~L~~n~l~~l~---~-l~~l~~L~~L 552 (1044)
.|.|.+..+.-......+..+|.++.|.++.|.+... +.......+.++++....|...... . ..-++++..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 6666666554333344566677777777777743321 1111223334556666555443211 1 2335566667
Q ss_pred ECCCCcCCCCCChhHhhhcccccceeecccccccCccCCcccCCCCCCceEEcCCCcccC
Q 001612 553 DLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQG 612 (1044)
Q Consensus 553 ~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~l~~n~l~~ 612 (1044)
.+..|++...-... ..-+.+.+.-|+++.|++..+.....+.+++.|..|.++++++..
T Consensus 205 ~v~e~PlK~~s~ek-~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 205 FVCEGPLKTESSEK-GSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred eeecCcccchhhcc-cCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 77777665322111 001112344567777777766555556667777777777776653
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.60 E-value=0.00014 Score=70.53 Aligned_cols=101 Identities=23% Similarity=0.304 Sum_probs=78.7
Q ss_pred cccEEEccCCCCcCCCCccCCCCCcEEECCCCcCCCCCChhHhhhcccccceeecccccccCccCCcccCCCCCCceEEc
Q 001612 526 QVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDL 605 (1044)
Q Consensus 526 ~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~l 605 (1044)
+...+++++|.+..++.+.+++.|.+|.+.+|.|+..-|.--...+ .|+.|.+.+|.+..+.+...+..++.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p--~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLP--NLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhcc--ccceEEecCcchhhhhhcchhccCCccceeee
Confidence 5677888889888888899999999999999999966665333332 49999999999999988888889999999999
Q ss_pred CCCcccCCCCC------CCCCCcEEEccC
Q 001612 606 HSNQLQGNIPY------PPPKAVLVDYSN 628 (1044)
Q Consensus 606 ~~n~l~~~~~~------~~~~l~~l~ls~ 628 (1044)
-+|+.+..--. ..|+++.+|++.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 99988743222 235555555544
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.59 E-value=5.6e-05 Score=55.32 Aligned_cols=36 Identities=44% Similarity=0.696 Sum_probs=18.0
Q ss_pred CCCEEeCCCCCCcCCCcccccCcCCCCEEeCCCCccc
Q 001612 889 SLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLS 925 (1044)
Q Consensus 889 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~ 925 (1044)
+|++|++++|+++ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3555555555555 34444555555555555555554
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.55 E-value=8.8e-06 Score=73.29 Aligned_cols=61 Identities=30% Similarity=0.484 Sum_probs=30.0
Q ss_pred cCcceEEEccCCcccccCCcccCCCCCCCEEeCCCCCCcCCCcccccCcCCCCEEeCCCCccc
Q 001612 863 LSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLS 925 (1044)
Q Consensus 863 l~~l~~LdLs~N~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~ 925 (1044)
++.++.+++++|.++ .+|.++..++.|+.||++.|.+. ..|+.+..|.++-.||...|.+-
T Consensus 76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 344445555555554 44444555555555555555554 34444444555555555555444
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.54 E-value=0.00011 Score=71.11 Aligned_cols=107 Identities=25% Similarity=0.188 Sum_probs=77.2
Q ss_pred cccceEECCCCcCcCccCCCCCCCCCccEEeCCCCCCcccCcccccCCCCCcEEECCCCccccCCC-hhhhcCCCCcEEE
Q 001612 693 EILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFP-WWLENISSLRVLV 771 (1044)
Q Consensus 693 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ 771 (1044)
.....+||++|.+... ..|+.++.|.+|.|++|+|+.+.|.--.-+++|+.|.|.+|.+...-. .-+..||.|++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4566677777776543 357778889999999999987777666667888999999988763321 2266788999999
Q ss_pred ccCCccccCCC-CCCCCCCCCcccEEEcCCC
Q 001612 772 LRSNSFYGNIS-CRENGDSWPKLQIVDLASN 801 (1044)
Q Consensus 772 L~~N~l~g~i~-~~~~~~~l~~L~~Ldls~N 801 (1044)
+-+|+.+..-. -...+..+|+|++||...=
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 99997743211 1235778899999998654
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.51 E-value=0.00033 Score=77.29 Aligned_cols=134 Identities=16% Similarity=0.224 Sum_probs=69.8
Q ss_pred CCCceEEcCCCcccCCCCCCCCCCcEEEccCCcCCcCCChhhhhccccceEEeccCC-cccCcCccchhccCCCcEEEcc
Q 001612 598 SPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSNN-SITGVIPETLCRAKYLLVLDLS 676 (1044)
Q Consensus 598 ~~L~~L~l~~n~l~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls 676 (1044)
.+++.|++++|.++ .+|..+++++.|.++++.--..+|..+ ...|+.|.+++| .+. .+|. +|+.|+++
T Consensus 52 ~~l~~L~Is~c~L~-sLP~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~ 120 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPVLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLPE------SVRSLEIK 120 (426)
T ss_pred cCCCEEEeCCCCCc-ccCCCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-cccc------ccceEEeC
Confidence 45556666665444 234445556666666543333445433 356777777777 333 3443 46667776
Q ss_pred CCcccccCChhHhhcccccceEECCCCc-Cc-CccCCCCCCCCCccEEeCCCCCCcccCcccccCCCCCcEEECCCCc
Q 001612 677 KNKLSGKMPTCLIKMSEILGVLNLRGNS-LS-GTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNK 752 (1044)
Q Consensus 677 ~N~l~~~ip~~~~~~~~~L~~L~L~~N~-l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 752 (1044)
.+... . +..++++|+.|.+.+++ .. ..+|..++ ++|++|++++|... ..|..+. .+|+.|+++.|.
T Consensus 121 ~n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 121 GSATD-S----IKNVPNGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred CCCCc-c----cccCcchHhheeccccccccccccccccC--CcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 65542 1 11223456666664432 11 11121222 56778888777755 3444333 477777777663
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.50 E-value=6.7e-05 Score=54.90 Aligned_cols=37 Identities=46% Similarity=0.671 Sum_probs=22.3
Q ss_pred CccEEeCCCCCCcccCcccccCCCCCcEEECCCCcccc
Q 001612 718 GLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRD 755 (1044)
Q Consensus 718 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 755 (1044)
+|++|++++|+++ .+|..+++|++|+.|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 4666666666666 345556666666666666666653
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.42 E-value=2e-05 Score=84.27 Aligned_cols=230 Identities=24% Similarity=0.237 Sum_probs=126.7
Q ss_pred CCCCEEEcCCCCCCCCCC--ccccCCCCCcEEecCCCCCCCCCcccCCCChhHHhhccccCceecCCCc-cCCCchhhhH
Q 001612 127 TNLTNLNLSNAGFAGQIP--IQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGA-NISAPGIEWC 203 (1044)
Q Consensus 127 ~~L~~L~Ls~~~~~~~lp--~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~-~l~~~~~~~~ 203 (1044)
..|+.|.++++.-.+.-| ....+++++++|++.+++. +.+..+..+-+.+++|+++++..+ .+++...
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~------iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L--- 208 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKK------ITDSSLLSLARYCRKLRHLNLHSCSSITDVSL--- 208 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhccee------ccHHHHHHHHHhcchhhhhhhcccchhHHHHH---
Confidence 468889999886554433 2345788899998888752 334555666778888999988884 4555443
Q ss_pred HHHhccCCCceEEecCCCC-CCCC-CcccccCCCCCCEEECCCCCCCCCChHhh----hCCCCCcEEEccCCCC-CCCcC
Q 001612 204 QALSSLVPKLQVLSLSSCY-LSGP-IHPSLAKLQSLSVIRLDQNDLLSPVPEFL----ADFFNLTSLRLSHSRL-NGTFP 276 (1044)
Q Consensus 204 ~~l~~~~~~L~~L~Ls~n~-l~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l----~~l~~L~~L~L~~n~l-~~~~p 276 (1044)
+.+.+-|++|++++++.|. +++. +.....+++.++.+.+.++.-.+ .+.+ +.+..+..+++..|.. +..--
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~ 286 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDL 286 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHH
Confidence 3344446888888888873 4432 12233455666666666553211 1222 2345566666666632 21111
Q ss_pred hh-hcCCCCCCEEECCCCCC-CCCCCCCCC-CCCCCcEEEccCCc-CCccCcccc-cCCCCCCEEeccCccCCCC--Cch
Q 001612 277 EK-ILQVHTLETLDLSGNSL-LQGSLPDFP-KNSSLRTLMLSNTN-FSGVLPDSI-GNLKNLSRLDLALCYFDGS--IPT 349 (1044)
Q Consensus 277 ~~-l~~l~~L~~L~Ls~n~~-~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~--~p~ 349 (1044)
.. =..+..|++|+.+++.. .+..+..+. ++.+|+.|.++.++ ++..--..+ .+++.|+.+++..+..... +..
T Consensus 287 ~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s 366 (483)
T KOG4341|consen 287 WLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS 366 (483)
T ss_pred HHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh
Confidence 11 12466777777777642 111122222 36677777777664 222111112 3456666666666643211 111
Q ss_pred hhcCCCCCcEEeCcCCcc
Q 001612 350 SLANLTQLVYLDLSFNKF 367 (1044)
Q Consensus 350 ~l~~l~~L~~L~L~~n~l 367 (1044)
.-.+++.|+.+.++++..
T Consensus 367 ls~~C~~lr~lslshce~ 384 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCEL 384 (483)
T ss_pred hccCCchhccCChhhhhh
Confidence 123456666666665543
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.11 E-value=0.00036 Score=83.96 Aligned_cols=153 Identities=21% Similarity=0.215 Sum_probs=98.4
Q ss_pred CCCCCcccCCCCCCCCCCCCCcCC-CCCCCCEEEcCCCCCCCC-CCccccCCCCCcEEecCCCCCCCCCcccCCCChhHH
Q 001612 101 LKYLQSLNLAFNMFNATEIPSGLG-SLTNLTNLNLSNAGFAGQ-IPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGL 178 (1044)
Q Consensus 101 l~~L~~LdLs~n~~~~~~lp~~l~-~l~~L~~L~Ls~~~~~~~-lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~l~~~ 178 (1044)
-.+|++||+++...-...=|..++ .||+|+.|.+++-.+... .-....++++|..||+|++.+.+. ..
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----------~G 190 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----------SG 190 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----------HH
Confidence 367888888876443222344454 578888888888666433 223345788888888888776443 35
Q ss_pred hhccccCceecCCCccCCCchhhhHHHHhccCCCceEEecCCCCCCCCC--c----ccccCCCCCCEEECCCCCCCCCCh
Q 001612 179 LQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPI--H----PSLAKLQSLSVIRLDQNDLLSPVP 252 (1044)
Q Consensus 179 l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~--~----~~l~~l~~L~~L~Ls~n~~~~~~~ 252 (1044)
+.++++|+.|.+.+-.+.. ...+..+..+ .+|++||+|........ . +.-..+++|+.||.|++.+...+-
T Consensus 191 IS~LknLq~L~mrnLe~e~--~~~l~~LF~L-~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l 267 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLEFES--YQDLIDLFNL-KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL 267 (699)
T ss_pred HhccccHHHHhccCCCCCc--hhhHHHHhcc-cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence 7788888888887766654 2234556666 88999999876544322 1 122358899999999988776544
Q ss_pred Hhh-hCCCCCcEEEc
Q 001612 253 EFL-ADFFNLTSLRL 266 (1044)
Q Consensus 253 ~~l-~~l~~L~~L~L 266 (1044)
+.+ ...++|+.+..
T Consensus 268 e~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 268 EELLNSHPNLQQIAA 282 (699)
T ss_pred HHHHHhCccHhhhhh
Confidence 433 33455554443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.82 E-value=0.0024 Score=60.12 Aligned_cols=121 Identities=17% Similarity=0.211 Sum_probs=49.9
Q ss_pred hhccccceEEeccCCcccCcCccchhccCCCcEEEccCCcccccCChhHhhcccccceEECCCCcCcCccCCCCCCCCCc
Q 001612 640 GNFVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGL 719 (1044)
Q Consensus 640 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 719 (1044)
+..+..++.+.+.. .+..+....|..+++|+.+++.++ +. .++...+..+++++.+.+.+ .+.......|..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccc
Confidence 33355566666553 455455556666666777766664 44 34443333334566666654 4444445556666666
Q ss_pred cEEeCCCCCCcccCcccccCCCCCcEEECCCCccccCCChhhhcCCCC
Q 001612 720 HTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSL 767 (1044)
Q Consensus 720 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 767 (1044)
+.+++..+ +.......|.++ .|+.+.+.. .+.......|.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 66666554 444444556665 666666654 3333444455555544
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.79 E-value=0.0025 Score=59.99 Aligned_cols=122 Identities=14% Similarity=0.216 Sum_probs=44.1
Q ss_pred cccCCCCCCEEECCCCCCCCCChHhhhCCCCCcEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q 001612 230 SLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSL 309 (1044)
Q Consensus 230 ~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L 309 (1044)
+|.++++|+.+.+.. .+.......|.++++|+.+.+..+ +.......+..+++|+.+.+.+ .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 445555555555543 233333344555555666665553 3322233444555555555543 2333333445555555
Q ss_pred cEEEccCCcCCccCcccccCCCCCCEEeccCccCCCCCchhhcCCCCC
Q 001612 310 RTLMLSNTNFSGVLPDSIGNLKNLSRLDLALCYFDGSIPTSLANLTQL 357 (1044)
Q Consensus 310 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 357 (1044)
+.+.+..+ +.......|.++ +|+.+.+.. .+......+|.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 55555443 332333445554 555555554 2222333445555444
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.66 E-value=0.0015 Score=66.46 Aligned_cols=108 Identities=19% Similarity=0.240 Sum_probs=52.2
Q ss_pred CCCCCcccCCCCCCCCCCCCCcCCCCCCCCEEEcCCC--CCCCCCCccccCCCCCcEEecCCCCCCCCCcccCCCChhHH
Q 001612 101 LKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNA--GFAGQIPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGL 178 (1044)
Q Consensus 101 l~~L~~LdLs~n~~~~~~lp~~l~~l~~L~~L~Ls~~--~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~l~~~ 178 (1044)
+..|+.|++.+..++.. ..+-.+++|++|.+|.| .+.+.++...-++++|++|++++|++..+. -..-
T Consensus 42 ~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ls-------tl~p 111 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLS-------TLRP 111 (260)
T ss_pred ccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccc-------ccch
Confidence 34444444444433321 23345566666666666 455555555555566666666666653211 0112
Q ss_pred hhccccCceecCCCccCCCchhhhHHHHhccCCCceEEecC
Q 001612 179 LQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLS 219 (1044)
Q Consensus 179 l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~~~~~L~~L~Ls 219 (1044)
++.+.+|..|++..|..+... ++-..+..++++|++||-.
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~-dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLD-DYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhcchhhhhcccCCccccc-cHHHHHHHHhhhhcccccc
Confidence 455555666666655444321 2222333333666655543
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.43 E-value=0.001 Score=78.93 Aligned_cols=63 Identities=25% Similarity=0.169 Sum_probs=29.8
Q ss_pred CCCCCCEEECCCCC-CCCCChHhhhC-CCCCcEEEccCCC-CCCCcChh-hcCCCCCCEEECCCCCC
Q 001612 233 KLQSLSVIRLDQND-LLSPVPEFLAD-FFNLTSLRLSHSR-LNGTFPEK-ILQVHTLETLDLSGNSL 295 (1044)
Q Consensus 233 ~l~~L~~L~Ls~n~-~~~~~~~~l~~-l~~L~~L~L~~n~-l~~~~p~~-l~~l~~L~~L~Ls~n~~ 295 (1044)
.+++|+.|+++++. ++...-..++. +++|++|.+.+|. ++...-.. ...++.|++|++++|..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 34555566665555 33333333332 5566666655554 33222222 23355566666665543
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.31 E-value=0.0021 Score=65.46 Aligned_cols=60 Identities=23% Similarity=0.341 Sum_probs=27.7
Q ss_pred CCCCCEEECCCCCCCCCChHhhhCCCCCcEEEccCC--CCCCCcChhhcCCCCCCEEECCCCCC
Q 001612 234 LQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHS--RLNGTFPEKILQVHTLETLDLSGNSL 295 (1044)
Q Consensus 234 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~n~~ 295 (1044)
+..|+.|++.+..++.. ..|-.+++|+.|.++.| ++++.++.....+++|++|++++|++
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 33444444444333322 22334555566666665 44433443334445555555555554
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.17 E-value=0.001 Score=78.88 Aligned_cols=138 Identities=27% Similarity=0.258 Sum_probs=77.5
Q ss_pred CCCCCCEEEcCCCCCCCC--CCccccCCCCCcEEecCCCCCCCCCcccCCCChhHHhhccccCceecCCCcc-CCCchhh
Q 001612 125 SLTNLTNLNLSNAGFAGQ--IPIQVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGLLQNLAELRELYLDGAN-ISAPGIE 201 (1044)
Q Consensus 125 ~l~~L~~L~Ls~~~~~~~--lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~-l~~~~~~ 201 (1044)
.+++|+.|.+.++.-... +-.....++.|+.|+++++..... ............+++|++|+++.+. +++.+..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLIT---LSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccc---cchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 367777777777644333 223445677777777776311000 0011112245566778888888776 6666654
Q ss_pred hHHHHhccCCCceEEecCCCC-CCCCCc-ccccCCCCCCEEECCCCCCCCC--ChHhhhCCCCCcEEEccC
Q 001612 202 WCQALSSLVPKLQVLSLSSCY-LSGPIH-PSLAKLQSLSVIRLDQNDLLSP--VPEFLADFFNLTSLRLSH 268 (1044)
Q Consensus 202 ~~~~l~~~~~~L~~L~Ls~n~-l~~~~~-~~l~~l~~L~~L~Ls~n~~~~~--~~~~l~~l~~L~~L~L~~ 268 (1044)
++. ..|++|++|.+.+|. ++...- .....++.|++|+++++..... +.....++++|+.|.+..
T Consensus 263 ~l~---~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 263 ALA---SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HHH---hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 443 335788888877776 443322 2234577788888887765321 223344566666655443
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.34 E-value=0.0017 Score=66.00 Aligned_cols=87 Identities=28% Similarity=0.249 Sum_probs=59.4
Q ss_pred cccEEEccCCCCcCCCCccCCCCCcEEECCCCcCCCCCChhHhhhcccccceeecccccccCccCCcccCCCCCCceEEc
Q 001612 526 QVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPITVLDL 605 (1044)
Q Consensus 526 ~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~l 605 (1044)
+.++|++.+|.+..+.-...++.|+.|.||-|+|+..-|- ..+. .|+.|+|..|.|.++...+-+.++++|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl--~rCt--rLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPL--QRCT--RLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhH--HHHH--HHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 4556666666666665566677777777777777644332 2232 37777777777777766556778899999999
Q ss_pred CCCcccCCCCC
Q 001612 606 HSNQLQGNIPY 616 (1044)
Q Consensus 606 ~~n~l~~~~~~ 616 (1044)
..|+-.|.-+.
T Consensus 96 ~ENPCc~~ag~ 106 (388)
T KOG2123|consen 96 DENPCCGEAGQ 106 (388)
T ss_pred ccCCcccccch
Confidence 99988765543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.13 E-value=0.0085 Score=36.38 Aligned_cols=19 Identities=53% Similarity=0.717 Sum_probs=9.5
Q ss_pred CCEEeCCCCccccccCcccc
Q 001612 914 LESLDLSMNHLSGQIPIQLA 933 (1044)
Q Consensus 914 L~~L~ls~N~l~g~~p~~~~ 933 (1044)
|+.|||++|+++ .+|.+|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 445555555555 4444443
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.93 E-value=0.0014 Score=66.58 Aligned_cols=80 Identities=26% Similarity=0.270 Sum_probs=40.8
Q ss_pred CCCCCcEEeCcCCcccCCCCcccCCCcccEEEccCCCCCCCCCchhhhcCCCccEEEeecCcCCCCCCcc-----cCCCc
Q 001612 353 NLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGS-----LFSLP 427 (1044)
Q Consensus 353 ~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~-----l~~l~ 427 (1044)
.|+.|+.|.|+-|+++. +..+..+++|++|+|..|.+...-.-..+.++++|+.|.|..|.-.+..+.. +.-+|
T Consensus 39 kMp~lEVLsLSvNkIss-L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISS-LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred hcccceeEEeecccccc-chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence 44444555555444442 2223334445555555554442222234667777788877777766544432 23356
Q ss_pred ccceee
Q 001612 428 MLQQLQ 433 (1044)
Q Consensus 428 ~L~~L~ 433 (1044)
+|++||
T Consensus 118 nLkKLD 123 (388)
T KOG2123|consen 118 NLKKLD 123 (388)
T ss_pred cchhcc
Confidence 666553
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.54 E-value=0.018 Score=34.90 Aligned_cols=20 Identities=30% Similarity=0.574 Sum_probs=10.2
Q ss_pred ceEEEccCCcccccCCcccCC
Q 001612 866 FTSIDFSRNNFDGPIPEEIGR 886 (1044)
Q Consensus 866 l~~LdLs~N~l~g~ip~~~~~ 886 (1044)
|+.|||++|+++ .||.+|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 445555555555 45544443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.95 E-value=0.00071 Score=77.89 Aligned_cols=170 Identities=27% Similarity=0.293 Sum_probs=82.9
Q ss_pred hHHhhccccCceecCCCccCCCchhhhHHHHhccC-CCceEEecCCCCCCCCC----cccccCCCCCCEEECCCCCCCC-
Q 001612 176 SGLLQNLAELRELYLDGANISAPGIEWCQALSSLV-PKLQVLSLSSCYLSGPI----HPSLAKLQSLSVIRLDQNDLLS- 249 (1044)
Q Consensus 176 ~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~~~-~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~n~~~~- 249 (1044)
...+.....|+.|++++|.+.+.+...+....... ..+++|++..|.++... ...+.....++.++++.|.+..
T Consensus 108 ~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~ 187 (478)
T KOG4308|consen 108 AQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIEL 187 (478)
T ss_pred HHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchh
Confidence 33455556666666666666655544443332221 34555666666555432 2334445566666666665421
Q ss_pred ---CChHhh----hCCCCCcEEEccCCCCCCCcC----hhhcCCCCCCEEECCCCCCCCCCCCCCCCCCCCcEEEccCCc
Q 001612 250 ---PVPEFL----ADFFNLTSLRLSHSRLNGTFP----EKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTN 318 (1044)
Q Consensus 250 ---~~~~~l----~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~ 318 (1044)
.++..+ ....++++|.+.+|.++...- ..+...+. .+..|++..|.
T Consensus 188 g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~-----------------------~~~el~l~~n~ 244 (478)
T KOG4308|consen 188 GLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGES-----------------------LLRELDLASNK 244 (478)
T ss_pred hhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccch-----------------------hhHHHHHHhcC
Confidence 111122 234556666666665542111 11222222 13334444444
Q ss_pred CCcc----CcccccCC-CCCCEEeccCccCCCCC----chhhcCCCCCcEEeCcCCccc
Q 001612 319 FSGV----LPDSIGNL-KNLSRLDLALCYFDGSI----PTSLANLTQLVYLDLSFNKFV 368 (1044)
Q Consensus 319 l~~~----~p~~l~~l-~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~ 368 (1044)
+.+. ....+..+ ..+++++++.|.++... ...+..++.++++.++.|.+.
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 4322 12233333 55667777777665433 334455667777777777664
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.72 E-value=0.002 Score=74.20 Aligned_cols=190 Identities=27% Similarity=0.269 Sum_probs=86.4
Q ss_pred CCcccCCCCCCCCCC---CCCcCCCCCCCCEEEcCCCCCCCCCCccc----cCC-CCCcEEecCCCCCCCCCcccCCCCh
Q 001612 104 LQSLNLAFNMFNATE---IPSGLGSLTNLTNLNLSNAGFAGQIPIQV----SGM-TRLVTLDLSSLNRFGAPLKLENPNL 175 (1044)
Q Consensus 104 L~~LdLs~n~~~~~~---lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l----~~l-~~L~~L~ls~n~~~~~~~~~~~~~l 175 (1044)
+..|+|.+|.+.... +...+.....|..|++++|.+.+.--..+ ... ..|++|++..|.++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g----~~~l 164 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEG----AAPL 164 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccc----hHHH
Confidence 455555555444321 11334445555555555555543211111 111 23444555444432211 1223
Q ss_pred hHHhhccccCceecCCCccCCCchhhhH-HHHhc---cCCCceEEecCCCCCCCCC----cccccCCCC-CCEEECCCCC
Q 001612 176 SGLLQNLAELRELYLDGANISAPGIEWC-QALSS---LVPKLQVLSLSSCYLSGPI----HPSLAKLQS-LSVIRLDQND 246 (1044)
Q Consensus 176 ~~~l~~l~~L~~L~l~~~~l~~~~~~~~-~~l~~---~~~~L~~L~Ls~n~l~~~~----~~~l~~l~~-L~~L~Ls~n~ 246 (1044)
.+.+.....+++++++.|.+...+.... ..+.+ ...++++|++++|.++... ...+...+. +..+++..|.
T Consensus 165 ~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 3334445555555555555443332221 11111 1245566666665554221 122333344 5556666665
Q ss_pred CCCCC----hHhhhCC-CCCcEEEccCCCCCCCcC----hhhcCCCCCCEEECCCCCCCC
Q 001612 247 LLSPV----PEFLADF-FNLTSLRLSHSRLNGTFP----EKILQVHTLETLDLSGNSLLQ 297 (1044)
Q Consensus 247 ~~~~~----~~~l~~l-~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~n~~~~ 297 (1044)
+.... ...+... ..+++++++.|.++.... ..+..++.++++.++.|.+..
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 54331 1223333 456777777777664433 334456677777777776543
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.24 E-value=0.0085 Score=59.48 Aligned_cols=82 Identities=18% Similarity=0.103 Sum_probs=70.4
Q ss_pred CCeEEEeCCCCCccCccCCCCCcccCCCCCcccCCCCCCCCCCCCCcCCCCCCCCEEEcCCCCCCCCCCccccCCCCCcE
Q 001612 76 GRVIGLDLSEESISAGIDNSSPLFSLKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPIQVSGMTRLVT 155 (1044)
Q Consensus 76 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~LdLs~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~ 155 (1044)
.||+.||++++.+...- ..+..++.|..||+|.|.+.- +|+.++....++++++.+|..+ ..|.+.++++++++
T Consensus 42 kr~tvld~~s~r~vn~~---~n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLG---KNFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred ceeeeehhhhhHHHhhc---cchHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 68999999998765321 256778999999999998865 8999999999999999999887 89999999999999
Q ss_pred EecCCCCC
Q 001612 156 LDLSSLNR 163 (1044)
Q Consensus 156 L~ls~n~~ 163 (1044)
+++.++.+
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 99988764
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.81 E-value=0.021 Score=56.84 Aligned_cols=84 Identities=18% Similarity=0.185 Sum_probs=68.0
Q ss_pred cCcceEEEccCCcccccCCcccCCCCCCCEEeCCCCCCcCCCcccccCcCCCCEEeCCCCccccccCccccCCCCCcEEE
Q 001612 863 LSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLN 942 (1044)
Q Consensus 863 l~~l~~LdLs~N~l~g~ip~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~ 942 (1044)
....+.||++.|++-. .-..|.-++.+..|++|.|.+. ..|..++.+..+..+++..|.++ ..|.++...+.+++++
T Consensus 41 ~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 4566788999988763 3445667788888999988887 78888888888888998888887 7788888889999888
Q ss_pred CcCCccc
Q 001612 943 LSHNNLV 949 (1044)
Q Consensus 943 l~~N~l~ 949 (1044)
+-.|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 8888763
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=86.13 E-value=0.47 Score=26.65 Aligned_cols=14 Identities=36% Similarity=0.600 Sum_probs=4.9
Q ss_pred ccEEEccCCCCcCC
Q 001612 527 VRTLRLASCKLRVI 540 (1044)
Q Consensus 527 L~~L~L~~n~l~~l 540 (1044)
|+.|++++|+++.+
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444433
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.75 E-value=0.26 Score=48.53 Aligned_cols=41 Identities=34% Similarity=0.479 Sum_probs=22.1
Q ss_pred HHHhccCCCceEEecCCC-CCCCCCcccccCCCCCCEEECCC
Q 001612 204 QALSSLVPKLQVLSLSSC-YLSGPIHPSLAKLQSLSVIRLDQ 244 (1044)
Q Consensus 204 ~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~ 244 (1044)
+.+....++|+.|++++| +|+...-..+..+++|+.|.+.+
T Consensus 144 ~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 144 ERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 333334466777777766 45444444455555555555543
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=80.91 E-value=1.2 Score=28.07 Aligned_cols=14 Identities=57% Similarity=0.691 Sum_probs=7.1
Q ss_pred CCCCEEeCCCCccc
Q 001612 912 QQLESLDLSMNHLS 925 (1044)
Q Consensus 912 ~~L~~L~ls~N~l~ 925 (1044)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555554
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=80.91 E-value=1.2 Score=28.07 Aligned_cols=14 Identities=57% Similarity=0.691 Sum_probs=7.1
Q ss_pred CCCCEEeCCCCccc
Q 001612 912 QQLESLDLSMNHLS 925 (1044)
Q Consensus 912 ~~L~~L~ls~N~l~ 925 (1044)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555554
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=78.83 E-value=1.6 Score=27.49 Aligned_cols=13 Identities=54% Similarity=0.764 Sum_probs=6.5
Q ss_pred CccEEeCCCCCCc
Q 001612 718 GLHTLDLNGNQLG 730 (1044)
Q Consensus 718 ~L~~L~Ls~N~l~ 730 (1044)
+|++|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4445555555554
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=78.83 E-value=1.6 Score=27.49 Aligned_cols=13 Identities=54% Similarity=0.764 Sum_probs=6.5
Q ss_pred CccEEeCCCCCCc
Q 001612 718 GLHTLDLNGNQLG 730 (1044)
Q Consensus 718 ~L~~L~Ls~N~l~ 730 (1044)
+|++|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4445555555554
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=78.17 E-value=0.54 Score=29.09 Aligned_cols=15 Identities=60% Similarity=0.793 Sum_probs=6.2
Q ss_pred CCCcEEECCCCcccc
Q 001612 741 RNLVVLDLGNNKIRD 755 (1044)
Q Consensus 741 ~~L~~L~Ls~N~l~~ 755 (1044)
++|+.|+|++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344555555555443
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.38 E-value=0.26 Score=48.57 Aligned_cols=81 Identities=26% Similarity=0.223 Sum_probs=35.5
Q ss_pred ccEEEeecCcCCCCCCcccCCCcccceeecCCcccCCC-CCcccccCCCCCCEEEcCCC-cCCCCCCchhhcCCCccEEE
Q 001612 405 LVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGGL-IPEFSNASSSALDTIDLSGN-RLEGPIPMSIFDLRNLKILI 482 (1044)
Q Consensus 405 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~ 482 (1044)
++.+|-++..+..+--..+.+++.++.|.+.+|.--+. --+......++|+.|++++| +|+..--..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 44444455444443333444455555555555532111 00111112345566666655 34433333444555555555
Q ss_pred ecC
Q 001612 483 LSS 485 (1044)
Q Consensus 483 L~~ 485 (1044)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 443
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=76.12 E-value=1.2 Score=27.57 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=9.7
Q ss_pred CCCcEEEccCCcccccCC
Q 001612 668 KYLLVLDLSKNKLSGKMP 685 (1044)
Q Consensus 668 ~~L~~L~Ls~N~l~~~ip 685 (1044)
++|+.|+|++|+|++...
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 456677777777664433
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=62.25 E-value=6.2 Score=25.05 Aligned_cols=15 Identities=53% Similarity=0.749 Sum_probs=10.3
Q ss_pred cCCCCEEeCCCCccc
Q 001612 911 LQQLESLDLSMNHLS 925 (1044)
Q Consensus 911 l~~L~~L~ls~N~l~ 925 (1044)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777775
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=56.26 E-value=8 Score=24.52 Aligned_cols=18 Identities=17% Similarity=0.499 Sum_probs=11.1
Q ss_pred ccccEEEccCCCCcCCCC
Q 001612 525 SQVRTLRLASCKLRVIPN 542 (1044)
Q Consensus 525 ~~L~~L~L~~n~l~~l~~ 542 (1044)
++|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356666666666666665
No 89
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=53.90 E-value=4.8 Score=37.80 Aligned_cols=11 Identities=9% Similarity=0.096 Sum_probs=5.2
Q ss_pred eeehhhHHHHH
Q 001612 1001 FFIAMAIEFVV 1011 (1044)
Q Consensus 1001 ~~~~~~~~~~~ 1011 (1044)
++++++||+++
T Consensus 50 IVIGvVVGVGg 60 (154)
T PF04478_consen 50 IVIGVVVGVGG 60 (154)
T ss_pred EEEEEEecccH
Confidence 44555555433
No 90
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=51.97 E-value=13 Score=26.35 Aligned_cols=22 Identities=18% Similarity=0.116 Sum_probs=9.9
Q ss_pred eeehhhHHHHHHHHHHHHhhhh
Q 001612 1001 FFIAMAIEFVVGFGSVVAPLMF 1022 (1044)
Q Consensus 1001 ~~~~~~~~~~~~~~~~~~~~~~ 1022 (1044)
..+++++.+++.+.++..++++
T Consensus 13 Ia~~VvVPV~vI~~vl~~~l~~ 34 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVLGAFLFF 34 (40)
T ss_pred EEEEEEechHHHHHHHHHHhhe
Confidence 3445555555444444333443
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=49.31 E-value=14 Score=23.83 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=11.5
Q ss_pred cCceecCCCccCCCchhhhH
Q 001612 184 ELRELYLDGANISAPGIEWC 203 (1044)
Q Consensus 184 ~L~~L~l~~~~l~~~~~~~~ 203 (1044)
+|++|+|++|.+.+.+...+
T Consensus 3 ~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 3 SLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred ccCEEECCCCCCCHHHHHHH
Confidence 45666666666665554443
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=38.57 E-value=1.1e+02 Score=34.85 Aligned_cols=109 Identities=17% Similarity=0.124 Sum_probs=55.1
Q ss_pred CCCEEECCCCCCCCCChHh--hhCCCCCcEEEccCCCCCC-CcChh----hcC----CCCCCEEECCCCCCCCCC---CC
Q 001612 236 SLSVIRLDQNDLLSPVPEF--LADFFNLTSLRLSHSRLNG-TFPEK----ILQ----VHTLETLDLSGNSLLQGS---LP 301 (1044)
Q Consensus 236 ~L~~L~Ls~n~~~~~~~~~--l~~l~~L~~L~L~~n~l~~-~~p~~----l~~----l~~L~~L~Ls~n~~~~~~---~~ 301 (1044)
.+++|+...|...+..... +..-+..+.+.+..-.-.. ..+.. +.. .--+..+.++.+...... +.
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 4777888877776654332 2334556666665433210 01111 111 112556666666543221 11
Q ss_pred CCCCCCCCcEEEccCCcCCc----cCcccccCCCCCCEEeccCccCC
Q 001612 302 DFPKNSSLRTLMLSNTNFSG----VLPDSIGNLKNLSRLDLALCYFD 344 (1044)
Q Consensus 302 ~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~ 344 (1044)
....-+.+.+|++++|.... .+|.....-.+++....+.|...
T Consensus 435 ~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred hhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 23345678888888886653 23444444456666666655543
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=37.71 E-value=24 Score=40.74 Aligned_cols=61 Identities=25% Similarity=0.232 Sum_probs=34.1
Q ss_pred ccccEEEccCCCCcCCCC----ccCCCCCcEEECCCCcCCCCCChhHhhhcccccceeecccccc
Q 001612 525 SQVRTLRLASCKLRVIPN----LKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLL 585 (1044)
Q Consensus 525 ~~L~~L~L~~n~l~~l~~----l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~N~l 585 (1044)
+.+..+.+++|++..+.. -...++|+.|+|++|+..-....+++..+...|++|-+.+|.+
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcc
Confidence 357777888887776654 3345677788888873322223344444433344444444443
No 94
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=33.89 E-value=25 Score=32.21 Aligned_cols=19 Identities=11% Similarity=0.305 Sum_probs=10.4
Q ss_pred eehhhHHHHHHHHHHHHhh
Q 001612 1002 FIAMAIEFVVGFGSVVAPL 1020 (1044)
Q Consensus 1002 ~~~~~~~~~~~~~~~~~~~ 1020 (1044)
++++++|+++|++++++++
T Consensus 66 i~~Ii~gv~aGvIg~Illi 84 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLI 84 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHH
Confidence 4555666666655544433
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=33.33 E-value=25 Score=40.63 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=15.9
Q ss_pred CCCCCeEeCCCceeeeecCCC--CCCCccccEEEccCC
Q 001612 500 LHNLAKLELSYNNLTVNAGSD--SSFPSQVRTLRLASC 535 (1044)
Q Consensus 500 l~~L~~L~L~~n~l~~~~~~~--~~~~~~L~~L~L~~n 535 (1044)
.+.+..+.+++|++..++... ....+.|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 344455555555544333221 122234555555555
No 96
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=32.62 E-value=2.5e+02 Score=32.12 Aligned_cols=65 Identities=26% Similarity=0.252 Sum_probs=41.6
Q ss_pred CCCcEEECCCCcCCCCCChhHhhh-cccccceeeccccccc--CccCCcccCCCCCCceEEcCCCccc
Q 001612 547 SKLFNLDLSDNQISGEIPNWVWEI-GNVSLQYLNLSHNLLS--SLQRPFSISDLSPITVLDLHSNQLQ 611 (1044)
Q Consensus 547 ~~L~~L~Ls~n~l~~~~p~~~~~~-~~~~L~~L~Ls~N~l~--~l~~~~~~~~l~~L~~L~l~~n~l~ 611 (1044)
..+.++|++.|.....+|...... ....++.++.+.-.+. ....+......+.++..+++.|...
T Consensus 214 ~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 214 LWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred ccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 358899999999998888765443 2234666776665443 2333333444567777777777654
No 97
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=29.60 E-value=37 Score=21.33 Aligned_cols=11 Identities=45% Similarity=0.664 Sum_probs=5.9
Q ss_pred CCCCEEEcCCC
Q 001612 127 TNLTNLNLSNA 137 (1044)
Q Consensus 127 ~~L~~L~Ls~~ 137 (1044)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45555555555
No 98
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.78 E-value=34 Score=47.48 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=22.6
Q ss_pred eCCCCCCcCCCcccccCcCCCCEEeCCCCcccc
Q 001612 894 NLSQNALTGPIPSAIGNLQQLESLDLSMNHLSG 926 (1044)
Q Consensus 894 ~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~g 926 (1044)
||++|+|+-.-+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 567777775555566677777777777776653
No 99
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=27.43 E-value=51 Score=23.03 Aligned_cols=11 Identities=36% Similarity=0.691 Sum_probs=4.8
Q ss_pred hhhHHHHHHHH
Q 001612 1004 AMAIEFVVGFG 1014 (1044)
Q Consensus 1004 ~~~~~~~~~~~ 1014 (1044)
++++++++|+.
T Consensus 7 aIIv~V~vg~~ 17 (38)
T PF02439_consen 7 AIIVAVVVGMA 17 (38)
T ss_pred hHHHHHHHHHH
Confidence 44444444443
No 100
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=26.05 E-value=44 Score=25.13 Aligned_cols=23 Identities=4% Similarity=0.127 Sum_probs=14.7
Q ss_pred HHHHhhhhhccchhHHHHHhhce
Q 001612 1015 SVVAPLMFSRKVNKWYNNLINRI 1037 (1044)
Q Consensus 1015 ~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1044)
+++++.++...++..|.+.+|..
T Consensus 14 ~lLg~~I~~~~K~ygYkht~d~~ 36 (50)
T PF12606_consen 14 GLLGLSICTTLKAYGYKHTVDPL 36 (50)
T ss_pred HHHHHHHHHHhhccccccccCCC
Confidence 34444555556777888888763
No 101
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=24.25 E-value=51 Score=28.13 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=15.5
Q ss_pred ceeeehhhHHHHHHHHHHHHhhhhhccch
Q 001612 999 DWFFIAMAIEFVVGFGSVVAPLMFSRKVN 1027 (1044)
Q Consensus 999 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1027 (1044)
.|.|.+.+.|+++.++++..+.+++.+|+
T Consensus 41 yWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 41 YWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 35666666666665555444444444443
No 102
>PF15102 TMEM154: TMEM154 protein family
Probab=23.99 E-value=54 Score=30.84 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhhhhhccchh
Q 001612 1007 IEFVVGFGSVVAPLMFSRKVNK 1028 (1044)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~ 1028 (1044)
|.+++.+.+++++++.+||||.
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHHHheeEEeeccc
Confidence 3333334444444444455553
No 103
>PRK10132 hypothetical protein; Provisional
Probab=23.77 E-value=66 Score=28.85 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHHhhhhhc
Q 001612 1004 AMAIEFVVGFGSVVAPLMFSR 1024 (1044)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~~~~~ 1024 (1044)
|.++|++.|+++++|+++.+|
T Consensus 87 w~svgiaagvG~llG~Ll~RR 107 (108)
T PRK10132 87 WCSVGTAAAVGIFIGALLSLR 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 556667777777778776654
No 104
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=22.27 E-value=40 Score=29.54 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=7.5
Q ss_pred eehhhHHHHHHHHHHHHh
Q 001612 1002 FIAMAIEFVVGFGSVVAP 1019 (1044)
Q Consensus 1002 ~~~~~~~~~~~~~~~~~~ 1019 (1044)
+++++++.++++++++++
T Consensus 68 iagi~vg~~~~v~~lv~~ 85 (96)
T PTZ00382 68 IAGISVAVVAVVGGLVGF 85 (96)
T ss_pred EEEEEeehhhHHHHHHHH
Confidence 344444444444333333
No 105
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=21.29 E-value=1.1e+02 Score=26.63 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=0.0
Q ss_pred ehhhHHHHHHHHHHHHhhhhhccchhHHHHHhhceeecee
Q 001612 1003 IAMAIEFVVGFGSVVAPLMFSRKVNKWYNNLINRIINCRF 1042 (1044)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1044)
+.+.||+|++.++.-.++++-.+-..||..+ .-|+||+
T Consensus 17 W~~LVGVv~~al~~SlLIalaaKC~~~~k~~--~SY~H~r 54 (102)
T PF15176_consen 17 WPFLVGVVVTALVTSLLIALAAKCPVWYKYL--ASYRHHR 54 (102)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHhHHHHHHH--hcccccc
Done!