Query 001612
Match_columns 1044
No_of_seqs 661 out of 6253
Neff 9.8
Searched_HMMs 29240
Date Tue Mar 26 16:07:58 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001612.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_910-914//hhsearch_pdb/001612hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 752.8 46.4 727 24-984 3-752 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 580.9 45.0 655 211-970 50-715 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 474.0 53.2 251 644-961 381-634 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 460.6 51.4 93 884-976 532-626 (680)
5 3j0a_A TOLL-like receptor 5; m 1.0 1 1 434.7 41.5 211 716-984 380-592 (844)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 432.7 44.5 213 693-955 350-566 (606)
7 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 419.6 36.8 212 666-955 348-564 (606)
8 3t6q_A CD180 antigen; protein- 1.0 1 1 416.9 44.1 212 667-929 349-564 (606)
9 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 415.9 44.2 191 661-929 369-562 (606)
10 4ecn_A Leucine-rich repeat pro 1.0 1 1 407.6 34.0 182 669-949 674-864 (876)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=752.76 Aligned_cols=727 Identities=30% Similarity=0.431 Sum_probs=420.0
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCC---CCCCCCCCC
Q ss_conf 31357990887999999770296798876344778899998422306759999869993999986676---689987535
Q 001612 24 VLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAG---IDNSSPLFS 100 (1044)
Q Consensus 24 ~~~~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~W~~~~~~c~w~gv~c~~~~~v~~L~L~~~~l~~~---~~~~~~l~~ 100 (1044)
+.+++.+.++|++|||+||+++. ||. .+++|+.++|||.|+||+|+ .+||++|+|++.++.|. +++ ++.+
T Consensus 3 ~~~~~~~~~~~~~all~~k~~~~-~~~---~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~--~l~~ 75 (768)
T 3rgz_A 3 QASPSQSLYREIHQLISFKDVLP-DKN---LLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSS--SLLS 75 (768)
T ss_dssp -----CCHHHHHHHHHHHHTTCS-CTT---SSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHH--HTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHCC-CCC---CCCCCCCCCCCCCCCCEEEC-CCCEEEEECCCCCCCCCCCCCCH--HHHC
T ss_conf 67656687899999999996678-962---14687899987688413878-99278987789986775576696--5731
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 887880017888899998898689999999998679999887880--111999994995679888998764579975677
Q 001612 101 LKYLQSLNLAFNMFNATEIPSGLGSLTNLTNLNLSNAGFAGQIPI--QVSGMTRLVTLDLSSLNRFGAPLKLENPNLSGL 178 (1044)
Q Consensus 101 l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~--~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~ 178 (1044)
+++|+.++++.+.+.. +|+.++++++|++|++++|.+.+.+|. .++++++|++|++++|.+
T Consensus 76 L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l--------------- 138 (768)
T 3rgz_A 76 LTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--------------- 138 (768)
T ss_dssp CTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEE---------------
T ss_pred CCCCCCCCCCCCCCCC--CCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCC---------------
T ss_conf 6802246786888678--70332457889989898985787078967872788999898968826---------------
Q ss_pred HHCCCCCCEECCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCHHH---
Q ss_conf 5205457363089966887503368887316998409965897799999600-027999988988899999997275---
Q 001612 179 LQNLAELRELYLDGANISAPGIEWCQALSSLVPKLQVLSLSSCYLSGPIHPS-LAKLQSLSVIRLDQNDLLSPVPEF--- 254 (1044)
Q Consensus 179 l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~-l~~l~~L~~L~Ls~n~~~~~~~~~--- 254 (1044)
.+..+.. +.++++|++|++++|.+.+..+..
T Consensus 139 ---------------------------------------------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 173 (768)
T 3rgz_A 139 ---------------------------------------------DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173 (768)
T ss_dssp ---------------------------------------------ECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred ---------------------------------------------CCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHH
T ss_conf ---------------------------------------------77479778563889998989798358858715566
Q ss_pred HHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 40999976998458989888571100789988997789989988989989999886898568737766962334899999
Q 001612 255 LADFFNLTSLRLSHSRLNGTFPEKILQVHTLETLDLSGNSLLQGSLPDFPKNSSLRTLMLSNTNFSGVLPDSIGNLKNLS 334 (1044)
Q Consensus 255 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 334 (1044)
+.++++|++|++++|.+.+..+. .. +++|++|++++|.+.+.+|. ++.+++|+
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~--~~------------------------l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~ 226 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDV--SR------------------------CVNLEFLDVSSNNFSTGIPF-LGDCSALQ 226 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBC--TT------------------------CTTCCEEECCSSCCCSCCCB-CTTCCSCC
T ss_pred HCCCCCCCEEECCCCCCCCCCCC--CC------------------------CCCCCEEECCCCCCCCCCCC-CCCCCCCC
T ss_conf 43589889898978803465784--54------------------------78689898928827887711-12699999
Q ss_pred EEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEEEECCC
Q ss_conf 99455865899770110399997599675786647799644898614998558979998881001028984099941576
Q 001612 335 RLDLALCYFDGSIPTSLANLTQLVYLDLSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNS 414 (1044)
Q Consensus 335 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 414 (1044)
+|++++|.+.+.+|..+..+++|++|++++|.+.+.++.. ..++|++|++++|.+.+.+|......+++|+.|++++|.
T Consensus 227 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~ 305 (768)
T 3rgz_A 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305 (768)
T ss_dssp EEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE
T ss_pred EEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCC
T ss_conf 8979488587816577744888898989888665716724-368789897917855772588888446868899896896
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCEEEECCCCCCCCCCH
Q ss_conf 78877863678755656655775348998843223888877887579968998982122379764899247746673445
Q 001612 415 LNGSIPGSLFSLPMLQQLQLAENKFGGLIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQL 494 (1044)
Q Consensus 415 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 494 (1044)
+++.+|..+..+++|++|++++|.+.+.+|... +..+++|+.|++++|++.+.+|.
T Consensus 306 l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~------------------------l~~l~~L~~L~Ls~n~l~~~~p~ 361 (768)
T 3rgz_A 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDT------------------------LLKMRGLKVLDLSFNEFSGELPE 361 (768)
T ss_dssp EEECCCGGGGGCTTCCEEECCSSEEEEECCHHH------------------------HTTCTTCCEEECCSSEEEECCCT
T ss_pred CCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHH------------------------HHCCCCCCEEECCCCCCCCCCCH
T ss_conf 778423677558776677897885257379788------------------------72488887884847843762309
Q ss_pred HHHHHCC-CCCEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCC
Q ss_conf 8887079-898585888311221699988776632898167788678985589977599877996889898357641566
Q 001612 495 AAIQRLH-NLAKLELSYNNLTVNAGSDSSFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNV 573 (1044)
Q Consensus 495 ~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~ 573 (1044)
. +..++ +|+.|++++|.+......... ...+++|+.|++++|.+.+.+|..+..
T Consensus 362 ~-l~~l~~~L~~L~Ls~N~l~~~~~~~~~--------------------~~~~~~L~~L~L~~n~l~~~~p~~l~~---- 416 (768)
T 3rgz_A 362 S-LTNLSASLLTLDLSSNNFSGPILPNLC--------------------QNPKNTLQELYLQNNGFTGKIPPTLSN---- 416 (768)
T ss_dssp T-HHHHTTTCSEEECCSSEEEEECCTTTT--------------------CSTTCCCCEEECCSSEEEEECCGGGGG----
T ss_pred H-HHHHHCCCCEEECCCCCCCCCCCHHHH--------------------HCCCCCCCEEECCCCCCCCCCCHHHHC----
T ss_conf 8-986322771998627874787676665--------------------332477618989778465424877756----
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCEEEECCC
Q ss_conf 56355224443347668765588998745776787465789999999719974378687689801330023415784137
Q 001612 574 SLQYLNLSHNLLSSLQRPFSISDLSPITVLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGNFVSFTLFFSLSN 653 (1044)
Q Consensus 574 ~L~~L~Ls~n~l~~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~ls~n~~~~~~~~~~~~~~~~L~~L~L~~ 653 (1044)
+++|+.|++++|.+.+ .+|..+.. ++.|+.|++++
T Consensus 417 -----------------------l~~L~~L~Ls~N~l~~---------------------~~p~~l~~-l~~L~~L~L~~ 451 (768)
T 3rgz_A 417 -----------------------CSELVSLHLSFNYLSG---------------------TIPSSLGS-LSKLRDLKLWL 451 (768)
T ss_dssp -----------------------CTTCCEEECCSSEEES---------------------CCCGGGGG-CTTCCEEECCS
T ss_pred -----------------------CCCCCEEECCCCCCCC---------------------CCCHHHHC-CCCCCEEECCC
T ss_conf -----------------------8987989895884668---------------------54677744-99889898978
Q ss_pred CCCCCCCCCCHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 85237674000045888689844882333578357640564315878999676766888788987539968899785558
Q 001612 654 NSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTV 733 (1044)
Q Consensus 654 n~~~~~~~~~l~~~~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 733 (1044)
|.+++.+|..+..+++|+.|++++|++++.+|..+..+ ++|+.|++++|++++.+|..+..+++|++|++++|++++.+
T Consensus 452 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 530 (768)
T 3rgz_A 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC-TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred CCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCC-CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCC
T ss_conf 81547189788287773299901995137588788169-98998975399518968768856899998989789433748
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCC------------
Q ss_conf 60132899994997789815568893333177995998358713457789989999996329985787------------
Q 001612 734 PKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASN------------ 801 (1044)
Q Consensus 734 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N------------ 801 (1044)
|..+..+++|+.|++++|++++.+|.++.....+..+.+..+. +...+.++
T Consensus 531 p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~ 593 (768)
T 3rgz_A 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK-----------------RYVYIKNDGMKKECHGAGNL 593 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC-----------------EEEEEECCSCCTTCCSSEEE
T ss_pred CHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCC-----------------CCCCCCCCCCCCCCCCCCCC
T ss_conf 8777088989989898884688279578604212232013454-----------------21111344432222332221
Q ss_pred -CCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCEEEECCCCCCCCCC
Q ss_conf -3777579566754321024401110366542200012344221221698644834557661375319993478121148
Q 001612 802 -NFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPI 880 (1044)
Q Consensus 802 -~~~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~i 880 (1044)
.+.|.++... ..+... .+.+......++.....+..++.++.||+++|+++|.+
T Consensus 594 ~~~~~~~~~~~-~~l~~~------------------------~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 594 LEFQGIRSEQL-NRLSTR------------------------NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp EECTTCCGGGG-GGGGGT------------------------CCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred CCCCCCCCHHH-HCCCCC------------------------CCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCC
T ss_conf 00135563232-002321------------------------10011331004627433403356657978588015558
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 83547878998896879988677760011868999786789706445570252777785797757815346997621134
Q 001612 881 PEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPISTQLQS 960 (1044)
Q Consensus 881 p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~g~ip~~~~~~~ 960 (1044)
|.++++++.|+.|+|++|.++|.||.+++++++|+.||+++|+++|.+|..+..+++|++||+++|+++|.||.+.++.+
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~ 728 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFET 728 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGG
T ss_pred CHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHCC
T ss_conf 77884141578784868803887896784777899898978802386886775788789787968815560899601024
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 332344688899899988889999
Q 001612 961 FLATSFEGNKGLCGPPLNVCRTNS 984 (1044)
Q Consensus 961 ~~~~~~~~n~~lc~~~~~~c~~~~ 984 (1044)
+...+|.||+++||+|+..|....
T Consensus 729 ~~~~~~~gN~~Lcg~~l~~C~~~~ 752 (768)
T 3rgz_A 729 FPPAKFLNNPGLCGYPLPRCDPSN 752 (768)
T ss_dssp SCGGGGCSCTEEESTTSCCCCSCC
T ss_pred CCHHHHCCCCHHCCCCCCCCCCCC
T ss_conf 897775698321088776788876
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=580.87 Aligned_cols=655 Identities=30% Similarity=0.395 Sum_probs=421.6
Q ss_pred CCCEEEECCCCCCCCC---CCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCH--HHCCCCCC
Q ss_conf 9840996589779999---960002799998898889999999727540999976998458989888571--10078998
Q 001612 211 PKLQVLSLSSCYLSGP---IHPSLAKLQSLSVIRLDQNDLLSPVPEFLADFFNLTSLRLSHSRLNGTFPE--KILQVHTL 285 (1044)
Q Consensus 211 ~~L~~L~L~~~~~~~~---~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L 285 (1044)
.+++.|+++++.+.+. ++..+.++++|+.++++.+.+.. .|..++.+++|++|++++|.+.+.+|. .++++++|
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC-CCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCC
T ss_conf 927898778998677557669657316802246786888678-7033245788998989898578707896787278899
Q ss_pred CEEECCCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCCC---CCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEE
Q ss_conf 899778998998898998-99998868985687377669623---34899999994558658997701103999975996
Q 001612 286 ETLDLSGNSLLQGSLPDF-PKNSSLRTLMLSNTNFSGVLPDS---IGNLKNLSRLDLALCYFDGSIPTSLANLTQLVYLD 361 (1044)
Q Consensus 286 ~~L~ls~n~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~---l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 361 (1044)
++|++++|.+.......+ ..+++|++|++++|.+++..+.. +..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~ 206 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLD 206 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEE
T ss_pred CEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEE
T ss_conf 9898968826774797785638899989897983588587155664358988989897880346578--45478689898
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 75786647799644898614998558979998881001028984099941576788778636787556566557753489
Q 001612 362 LSFNKFVGPIPSLHMSKNLTHLDLSYNALPGAISSTDWEHLSNLVYVDLRYNSLNGSIPGSLFSLPMLQQLQLAENKFGG 441 (1044)
Q Consensus 362 l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 441 (1044)
+++|.+.+.++.+...++|++|++++|.+.+.++.. +..+++|+.|++++|.+.+.+|.. .+++|++|++++|.+.+
T Consensus 207 Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~ 283 (768)
T 3rgz_A 207 VSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG 283 (768)
T ss_dssp CCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHH-HHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCC
T ss_conf 928827887711126999998979488587816577-744888898989888665716724--36878989791785577
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCEEEECCCCCCCCCCHHHHHHCCCCCEEECCCCEEEEECCCCC
Q ss_conf 98843223888877887579968998982122379764899247746673445888707989858588831122169998
Q 001612 442 LIPEFSNASSSALDTIDLSGNRLEGPIPMSIFDLRNLKILILSSNKLNGTVQLAAIQRLHNLAKLELSYNNLTVNAGSDS 521 (1044)
Q Consensus 442 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 521 (1044)
.+|......+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.++...+..++
T Consensus 284 ~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~-------------------- 343 (768)
T 3rgz_A 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR-------------------- 343 (768)
T ss_dssp SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCT--------------------
T ss_pred CCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCC--------------------
T ss_conf 258888844686889989689677842367755877667789788525737978872488--------------------
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 87766328981677886789855899775998779968898983576415665635522444334766876558899874
Q 001612 522 SFPSQVRTLRLASCKLRVIPNLKNQSKLFNLDLSDNQISGEIPNWVWEIGNVSLQYLNLSHNLLSSLQRPFSISDLSPIT 601 (1044)
Q Consensus 522 ~~~~~L~~L~L~~~~l~~l~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~l~~L~ 601 (1044)
+|+.|++++|.+.+.+|..+..+. ++|+
T Consensus 344 --------------------------~L~~L~Ls~n~l~~~~p~~l~~l~--------------------------~~L~ 371 (768)
T 3rgz_A 344 --------------------------GLKVLDLSFNEFSGELPESLTNLS--------------------------ASLL 371 (768)
T ss_dssp --------------------------TCCEEECCSSEEEECCCTTHHHHT--------------------------TTCS
T ss_pred --------------------------CCCEEECCCCCCCCCCCHHHHHHH--------------------------CCCC
T ss_conf --------------------------887884847843762309898632--------------------------2771
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHH-CCCCCEEEECCCCCCCCCCCCCHHCCCCCCEEECCCCCC
Q ss_conf 5776787465789999999719974378687689801330-023415784137852376740000458886898448823
Q 001612 602 VLDLHSNQLQGNIPYPPPKAVLVDYSNNSFTSSIPDDIGN-FVSFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKL 680 (1044)
Q Consensus 602 ~L~l~~n~l~~~~~~~~~~l~~l~ls~n~~~~~~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~N~l 680 (1044)
.|++++|.+.+.++ ..+.. ..+.++.+++++|.+++.+|..++.+++|+.|++++|++
T Consensus 372 ~L~Ls~N~l~~~~~---------------------~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 430 (768)
T 3rgz_A 372 TLDLSSNNFSGPIL---------------------PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430 (768)
T ss_dssp EEECCSSEEEEECC---------------------TTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE
T ss_pred EEECCCCCCCCCCC---------------------HHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCC
T ss_conf 99862787478767---------------------666533247761898977846542487775689879898958846
Q ss_pred CCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHH
Q ss_conf 33578357640564315878999676766888788987539968899785558601328999949977898155688933
Q 001612 681 SGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPWW 760 (1044)
Q Consensus 681 ~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 760 (1044)
++.+|..+..+ ++|+.|++++|.+.+.+|..+..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|.+
T Consensus 431 ~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 509 (768)
T 3rgz_A 431 SGTIPSSLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509 (768)
T ss_dssp ESCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred CCCCCHHHHCC-CCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHH
T ss_conf 68546777449-98898989788154718978828777329990199513758878816998998975399518968768
Q ss_pred HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCC
Q ss_conf 33177995998358713457789989999996329985787377757956675432102440111036654220001234
Q 001612 761 LENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIA 840 (1044)
Q Consensus 761 l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (1044)
++++++|++|++++|++.|.+ |..+..+++|+.+|+++|+++|.+|..++.....+..... ........... ...
T Consensus 510 ~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~ 584 (768)
T 3rgz_A 510 IGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI-AGKRYVYIKND--GMK 584 (768)
T ss_dssp GGGCTTCCEEECCSSCCEEEC--CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTT-CSCEEEEEECC--SCC
T ss_pred HHCCCCCCEEECCCCCCCCCC--CHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCC-CCCCCCCCCCC--CCC
T ss_conf 856899998989789433748--8777088989989898884688279578604212232013-45421111344--432
Q ss_pred CCCCCCCEEEEECCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 42212216986448345576613753199934781211488354787899889687998867776001186899978678
Q 001612 841 DFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLS 920 (1044)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls 920 (1044)
.............+........+..+..++++.|.+.|.+|..++.++.|+.||||+|+++|.+|.++++++.|+.|+++
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls 664 (768)
T 3rgz_A 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664 (768)
T ss_dssp TTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECC
T ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECC
T ss_conf 22233222100135563232002321100113310046274334033566579785880155587788414157878486
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCC
Q ss_conf 97064455702527777857977578153469976-211343323446888
Q 001612 921 MNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPIS-TQLQSFLATSFEGNK 970 (1044)
Q Consensus 921 ~N~l~~~~p~~~~~l~~L~~l~l~~N~l~g~ip~~-~~~~~~~~~~~~~n~ 970 (1044)
+|+++|.+|..+.+++.|+.||+++|+++|.||.. ..+..+....+.+|+
T Consensus 665 ~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCC
T ss_conf 880388789678477789989897880238688677578878978796881
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=473.99 Aligned_cols=251 Identities=23% Similarity=0.216 Sum_probs=173.9
Q ss_pred CCCEEEECCCCCCCCCCCCCHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 34157841378523767400004588868984488233357835764056431587899967676688878898753996
Q 001612 644 SFTLFFSLSNNSITGVIPETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLD 723 (1044)
Q Consensus 644 ~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 723 (1044)
+.++.+++++|.+++..+..+..+++|+.|++++|++++.+|...+...++|+.|++++|.+.+..+..|..+++|+.|+
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCH
T ss_conf 86766889999777677544207788888867787575435755325754612784489975422764550075431011
Q ss_pred CCCCCCC--CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 8899785--55860132899994997789815568893333177995998358713457789989999996329985787
Q 001612 724 LNGNQLG--GTVPKSLANCRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASN 801 (1044)
Q Consensus 724 L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N 801 (1044)
+++|.+. +..|..+..+++|+.|++++|++++..+..+.++++|+.|++++|.+.+... .
T Consensus 461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~--~---------------- 522 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK--H---------------- 522 (680)
T ss_dssp CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGS--T----------------
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCH--H----------------
T ss_conf 0146442256677645557878999899998776794463455346888588997300000--0----------------
Q ss_pred CCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf 37775795667543210244011103665422000123442212216986448345576613753199934781211488
Q 001612 802 NFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIP 881 (1044)
Q Consensus 802 ~~~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip 881 (1044)
.+|.. ....+..++.|+.|++++|+++...+
T Consensus 523 ----~~~~~---------------------------------------------~~~~~~~l~~L~~L~L~~N~l~~i~~ 553 (680)
T 1ziw_A 523 ----ANPGG---------------------------------------------PIYFLKGLSHLHILNLESNGFDEIPV 553 (680)
T ss_dssp ----TSTTS---------------------------------------------CCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ----HCCCC---------------------------------------------CCHHHCCCCCCCEEECCCCCCCCCCH
T ss_conf ----04677---------------------------------------------41423379988888899997887797
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 3547878998896879988677760011868999786789706445570252-777785797757815346997621134
Q 001612 882 EEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLA-NLTFLSFLNLSHNNLVGKIPISTQLQS 960 (1044)
Q Consensus 882 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~~~-~l~~L~~l~l~~N~l~g~ip~~~~~~~ 960 (1044)
..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++++..|..+. .+++|+.+++++|++.|.++...++..
T Consensus 554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~ 633 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVN 633 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEEC
T ss_pred HHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHH
T ss_conf 77346667522389999777679768378988888989999687059668301146657798318970257766899999
Q ss_pred C
Q ss_conf 3
Q 001612 961 F 961 (1044)
Q Consensus 961 ~ 961 (1044)
+
T Consensus 634 ~ 634 (680)
T 1ziw_A 634 W 634 (680)
T ss_dssp C
T ss_pred H
T ss_conf 9
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=460.58 Aligned_cols=93 Identities=23% Similarity=0.204 Sum_probs=41.7
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC--CCCCC
Q ss_conf 4787899889687998867776001186899978678970644557025277778579775781534699762--11343
Q 001612 884 IGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPIST--QLQSF 961 (1044)
Q Consensus 884 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~g~ip~~~--~~~~~ 961 (1044)
+.+++.|+.|+|++|.++...+..|.++++|+.|++++|++++..+..+..+++|+.|++++|++++..|... .+..+
T Consensus 532 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L 611 (680)
T 1ziw_A 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL 611 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTC
T ss_pred HCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCC
T ss_conf 33799888888999978877977734666752238999977767976837898888898999968705966830114665
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 323446888998999
Q 001612 962 LATSFEGNKGLCGPP 976 (1044)
Q Consensus 962 ~~~~~~~n~~lc~~~ 976 (1044)
....+.+||+.|.++
T Consensus 612 ~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 612 TELDMRFNPFDCTCE 626 (680)
T ss_dssp SEEECTTCCCCBCCC
T ss_pred CEEECCCCCCCCCCC
T ss_conf 779831897025776
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=434.67 Aligned_cols=211 Identities=24% Similarity=0.346 Sum_probs=134.5
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9875399688997855586013289999499778981556889-333317799599835871345778998999999632
Q 001612 716 NCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFP-WWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQ 794 (1044)
Q Consensus 716 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~ 794 (1044)
+++|+.|++++|+++ .+|.. ..+++.|++++|++.+... ..+.++++|+.|++++|.+.+... ......+++|+
T Consensus 380 ~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~~~L~ 454 (844)
T 3j0a_A 380 IPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG-DQTPSENPSLE 454 (844)
T ss_dssp CCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS-SSSSCSCTTCC
T ss_pred CCCCCHHCCCCCCCC-CCCCC---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCC
T ss_conf 898232005899723-14554---55431221456753457556665127766666677871255554-33356687310
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCEEEECCCC
Q ss_conf 99857873777579566754321024401110366542200012344221221698644834557661375319993478
Q 001612 795 IVDLASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRN 874 (1044)
Q Consensus 795 ~L~ls~N~~~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N 874 (1044)
.|++++|.+++..+... ....+..++.|+.|++++|
T Consensus 455 ~L~Ls~N~l~~~~~~~~--------------------------------------------~~~~~~~l~~L~~L~Ls~N 490 (844)
T 3j0a_A 455 QLFLGENMLQLAWETEL--------------------------------------------CWDVFEGLSHLQVLYLNHN 490 (844)
T ss_dssp BCEEESCCCSSSCCSCC--------------------------------------------CSSCSSCBCCEECCCCCHH
T ss_pred CCCCCCCCCCCCCCCCC--------------------------------------------CHHHHCCCCCCCEEECCCC
T ss_conf 02477773644101355--------------------------------------------3555447553657778898
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 12114883547878998896879988677760011868999786789706445570252777785797757815346997
Q 001612 875 NFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLVGKIPI 954 (1044)
Q Consensus 875 ~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~g~ip~ 954 (1044)
++++.+|..+..+++|+.|+|++|++++..|..+. ++|+.||+++|++++.+|..+. .|+.+++++|++.|.++.
T Consensus 491 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL 565 (844)
T ss_dssp HHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC
T ss_pred CCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHHC---CCCEEEECCCCCCCCCCC
T ss_conf 56553955704501221569999978745710110--0455888988847888966837---768899319970253661
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCC
Q ss_conf 6211343323446888998999888-89999
Q 001612 955 STQLQSFLATSFEGNKGLCGPPLNV-CRTNS 984 (1044)
Q Consensus 955 ~~~~~~~~~~~~~~n~~lc~~~~~~-c~~~~ 984 (1044)
.. +..+ ...++..+||.+... |..|.
T Consensus 566 ~~-f~~~---~~~~~~~~~~~~~~~~C~~p~ 592 (844)
T 3j0a_A 566 ST-FINW---LNHTNVTIAGPPADIYCVYPD 592 (844)
T ss_dssp CS-HHHH---HHHTTTTTCCCGGGCCCSSCS
T ss_pred HH-HHHH---HHHCCCCCCCCCCCCCCCCCH
T ss_conf 89-9999---973685302660027557806
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=432.66 Aligned_cols=213 Identities=23% Similarity=0.264 Sum_probs=142.4
Q ss_pred CCCCEEECCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH-HHHCCCCCCE
Q ss_conf 64315878999676766--88878898753996889978555860132899994997789815568893-3331779959
Q 001612 693 EILGVLNLRGNSLSGTL--SVTFPGNCGLHTLDLNGNQLGGTVPKSLANCRNLVVLDLGNNKIRDTFPW-WLENISSLRV 769 (1044)
Q Consensus 693 ~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~ 769 (1044)
++|+.|++++|.+.+.. +..+.++++|++|++++|.+.+..|..+..+++|+.|++++|++.+..+. ++.++++|+.
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 429 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred CCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCE
T ss_conf 75898878899666456752210567888989898996775788873477457768788886777565212417655888
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 9835871345778998999999632998578737775-795667543210244011103665422000123442212216
Q 001612 770 LVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGR-VPQKCITSWKAMMSDEDEAQSNFKDVHFEFLKIADFYYQDAV 848 (1044)
Q Consensus 770 L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~g~-ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (1044)
|++++|.+.+.. +..+..+++|+.|++++|++.+. +|..
T Consensus 430 L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------------------------------------- 469 (606)
T 3t6q_A 430 LNLSHSLLDISS--EQLFDGLPALQHLNLQGNHFPKGNIQKT-------------------------------------- 469 (606)
T ss_dssp EECTTCCCBTTC--TTTTTTCTTCCEEECTTCBCGGGEECSS--------------------------------------
T ss_pred EECCCCCCCCCC--HHHHHCCCCCCEEECCCCCCCCCCCCCC--------------------------------------
T ss_conf 989898557768--7787378878889898998885434543--------------------------------------
Q ss_pred EEEECCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 98644834557661375319993478121148835478789988968799886777600118689997867897064455
Q 001612 849 TVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTGPIPSAIGNLQQLESLDLSMNHLSGQI 928 (1044)
Q Consensus 849 ~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~ 928 (1044)
..+..++.|+.|++++|.+++.+|..++.++.|+.|+|++|++++.+|+.+..++.| .|++++|++++.+
T Consensus 470 ---------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~ 539 (606)
T 3t6q_A 470 ---------NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL 539 (606)
T ss_dssp ---------CGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCC
T ss_pred ---------HHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCC
T ss_conf ---------124048876688799996670686463265678889898980686896684756651-8987689414268
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 702527777857977578153469976
Q 001612 929 PIQLANLTFLSFLNLSHNNLVGKIPIS 955 (1044)
Q Consensus 929 p~~~~~l~~L~~l~l~~N~l~g~ip~~ 955 (1044)
|..+..+++|+.+++++|++.|.++..
T Consensus 540 ~~~~~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 540 PSLLPILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp GGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred HHHCCCCCCCCEEECCCCCCCCCCCCH
T ss_conf 766256778788967799861667757
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=419.64 Aligned_cols=212 Identities=25% Similarity=0.232 Sum_probs=147.1
Q ss_pred CCCCCCEEECCCCCCCCC--CCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCC
Q ss_conf 458886898448823335--783576405643158789996767668887889875399688997855586-01328999
Q 001612 666 RAKYLLVLDLSKNKLSGK--MPTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVP-KSLANCRN 742 (1044)
Q Consensus 666 ~~~~L~~L~Ls~N~l~~~--ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~ 742 (1044)
.+++|+.|++++|++++. +|..+..+ ++|+.|++++|.+++. +..+..+++|+.|++++|.+.+..| ..+..+++
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGT-NSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCC-SCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHHCCC-CCCCEEECCCCCCCCC-HHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCC
T ss_conf 4898887977587368775201221467-7554867889953000-5540688888965898870587537645646213
Q ss_pred CCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC-CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 94997789815568893333177995998358713457-78998999999632998578737775795667543210244
Q 001612 743 LVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGN-ISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSD 821 (1044)
Q Consensus 743 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~L~~L~ls~N~~~g~ip~~~~~~~~~~~~~ 821 (1044)
|+.|++++|++.+..|..+.++++|+.|++++|.+.+. + +..+.
T Consensus 426 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~--------------------------------- 470 (606)
T 3vq2_A 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL--SNVFA--------------------------------- 470 (606)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE--CSCCT---------------------------------
T ss_pred CCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCH--HHHHC---------------------------------
T ss_conf 7889896897874335553477878989898983798546--77604---------------------------------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 01110366542200012344221221698644834557661375319993478121148835478789988968799886
Q 001612 822 EDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALT 901 (1044)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~ 901 (1044)
.++.|+.|++++|.+++.+|..++.+++|+.|++++|+++
T Consensus 471 ----------------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 510 (606)
T 3vq2_A 471 ----------------------------------------NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510 (606)
T ss_dssp ----------------------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ----------------------------------------CCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC
T ss_conf ----------------------------------------5788998989888577648656154646898989899578
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCC
Q ss_conf 77760011868999786789706445570252777-7857977578153469976
Q 001612 902 GPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLT-FLSFLNLSHNNLVGKIPIS 955 (1044)
Q Consensus 902 g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~-~L~~l~l~~N~l~g~ip~~ 955 (1044)
+.+|..+..+++|+.|++++|+++ .+|..+..++ +|+.+++++|++.|.++..
T Consensus 511 ~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 511 FLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp CEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CCCHHHCCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCCCH
T ss_conf 748777068876898889898376-668767521021748876289866477648
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=416.93 Aligned_cols=212 Identities=23% Similarity=0.252 Sum_probs=123.0
Q ss_pred CCCCCEEECCCCCCCCCC--CHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCC
Q ss_conf 588868984488233357--835764056431587899967676688878898753996889978555860-13289999
Q 001612 667 AKYLLVLDLSKNKLSGKM--PTCLIKMSEILGVLNLRGNSLSGTLSVTFPGNCGLHTLDLNGNQLGGTVPK-SLANCRNL 743 (1044)
Q Consensus 667 ~~~L~~L~Ls~N~l~~~i--p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L 743 (1044)
+++|+.|++++|++++.. +..+..+ ++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+. .+..+++|
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNL-SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTC-TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred CCCCCEEECCCCCCCCCCCCCHHCCCC-CCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCC
T ss_conf 675898878899666456752210567-8889898989967757888734774577687888867775652124176558
Q ss_pred CEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC-CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCH
Q ss_conf 4997789815568893333177995998358713457-789989999996329985787377757956675432102440
Q 001612 744 VVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGN-ISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMMSDE 822 (1044)
Q Consensus 744 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~L~~L~ls~N~~~g~ip~~~~~~~~~~~~~~ 822 (1044)
+.|++++|.+.+..|.++.++++|+.|++++|++.+. ++.+..+..+++|+.|++++|++++..|...
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----------- 496 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF----------- 496 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT-----------
T ss_pred CEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHH-----------
T ss_conf 889898985577687787378878889898998885434543124048876688799996670686463-----------
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 11103665422000123442212216986448345576613753199934781211488354787899889687998867
Q 001612 823 DEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNALTG 902 (1044)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g 902 (1044)
..++.|+.|++++|.+++.+|..+.+++.| .|++++|.+++
T Consensus 497 --------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~ 537 (606)
T 3t6q_A 497 --------------------------------------TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI 537 (606)
T ss_dssp --------------------------------------TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred --------------------------------------CCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCC
T ss_conf --------------------------------------265678889898980686896684756651-89876894142
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 776001186899978678970644557
Q 001612 903 PIPSAIGNLQQLESLDLSMNHLSGQIP 929 (1044)
Q Consensus 903 ~ip~~~~~l~~L~~L~ls~N~l~~~~p 929 (1044)
.+|..+..+++|+.+++++|.+.+..+
T Consensus 538 ~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 538 ILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CCHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 687662567787889677998616677
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=415.89 Aligned_cols=191 Identities=20% Similarity=0.151 Sum_probs=120.2
Q ss_pred CCCHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 40000458886898448823335783576405643158789996767668-88788987539968899785558601328
Q 001612 661 PETLCRAKYLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLS-VTFPGNCGLHTLDLNGNQLGGTVPKSLAN 739 (1044)
Q Consensus 661 ~~~l~~~~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 739 (1044)
+..+..++.|+.|++++|.++ .+|..+..+ ++|+.|++++|.+.+..+ ..|.++++|++|++++|.+.+..|..+..
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 446 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAI-IMSANFMGL-EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEE-EECCCCTTC-TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred HHHHCCCCCCCEEECCCCCCC-CCHHHCCCC-CCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCC
T ss_conf 122146775548678899530-005540688-888965898870587537645646213788989689787433555347
Q ss_pred CCCCCEEECCCCCCCC-CCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHC
Q ss_conf 9999499778981556-889333317799599835871345778998999999632998578737775795667543210
Q 001612 740 CRNLVVLDLGNNKIRD-TFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAM 818 (1044)
Q Consensus 740 l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~g~ip~~~~~~~~~~ 818 (1044)
+++|+.|++++|++++ .+|..++.+++|+.|++++|.+.+.. +..+..
T Consensus 447 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~----------------------------- 495 (606)
T 3vq2_A 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS--WGVFDT----------------------------- 495 (606)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC--TTTTTT-----------------------------
T ss_pred CCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCC--HHHHCC-----------------------------
T ss_conf 7878989898983798546776045788998989888577648--656154-----------------------------
Q ss_pred CCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 24401110366542200012344221221698644834557661375319993478121148835478789988968799
Q 001612 819 MSDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQN 898 (1044)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N 898 (1044)
++.|+.|++++|.+++.+|..+.++++|+.|++++|
T Consensus 496 --------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 496 --------------------------------------------LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp --------------------------------------------CTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred --------------------------------------------CCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCC
T ss_conf --------------------------------------------646898989899578748777068876898889898
Q ss_pred CCCCCCCCCCCCCC-CCCEEECCCCCCCCCCC
Q ss_conf 88677760011868-99978678970644557
Q 001612 899 ALTGPIPSAIGNLQ-QLESLDLSMNHLSGQIP 929 (1044)
Q Consensus 899 ~l~g~ip~~~~~l~-~L~~L~ls~N~l~~~~p 929 (1044)
+++ .+|..+..++ +|+.|++++|.+.+..+
T Consensus 532 ~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 532 RIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCC-CCCHHHHHHCCCCCEEECCCCCCCCCCC
T ss_conf 376-6687675210217488762898664776
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=407.57 Aligned_cols=182 Identities=21% Similarity=0.206 Sum_probs=107.0
Q ss_pred CCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCC-------CCCCCCEEECCCCCCCCCCCCCCC--C
Q ss_conf 8868984488233357835764056431587899967676688878-------898753996889978555860132--8
Q 001612 669 YLLVLDLSKNKLSGKMPTCLIKMSEILGVLNLRGNSLSGTLSVTFP-------GNCGLHTLDLNGNQLGGTVPKSLA--N 739 (1044)
Q Consensus 669 ~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~p~~l~--~ 739 (1044)
+|+.|++++|+++ .+|..++...++|+.|++++|.+..+.+..+. ++++|+.|+|++|+++ .+|..+. .
T Consensus 674 ~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~ 751 (876)
T 4ecn_A 674 NASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT 751 (876)
T ss_dssp CEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred CCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCHHHHHHCC
T ss_conf 7688983199688-6597887138988999898996885496784555334321487158988899786-6527762442
Q ss_pred CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 99994997789815568893333177995998358713457789989999996329985787377757956675432102
Q 001612 740 CRNLVVLDLGNNKIRDTFPWWLENISSLRVLVLRSNSFYGNISCRENGDSWPKLQIVDLASNNFGGRVPQKCITSWKAMM 819 (1044)
Q Consensus 740 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~g~ip~~~~~~~~~~~ 819 (1044)
+++|+.|++++|++++ +|..+.++++|+.|++++|+ +
T Consensus 752 l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~--------------------~---------------------- 788 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR--------------------D---------------------- 788 (876)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB--------------------C----------------------
T ss_pred CCCCCEEEECCCCCCC-CCHHHHCCCCCCEEECCCCC--------------------C----------------------
T ss_conf 7986989908997876-10566159998899887997--------------------7----------------------
Q ss_pred CCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 44011103665422000123442212216986448345576613753199934781211488354787899889687998
Q 001612 820 SDEDEAQSNFKDVHFEFLKIADFYYQDAVTVTSKGLEMELVKILSIFTSIDFSRNNFDGPIPEEIGRLKSLHGLNLSQNA 899 (1044)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~ 899 (1044)
+++|++.+.+|..+.++++|+.|+|++|.
T Consensus 789 ---------------------------------------------------ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 789 ---------------------------------------------------AEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp ---------------------------------------------------TTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred ---------------------------------------------------CCCCCCCCCCHHHHHCCCCCCEEECCCCC
T ss_conf ---------------------------------------------------66563244486888369987889887997
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 86777600118689997867897064455702527777857977578153
Q 001612 900 LTGPIPSAIGNLQQLESLDLSMNHLSGQIPIQLANLTFLSFLNLSHNNLV 949 (1044)
Q Consensus 900 l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 949 (1044)
+ +.+|..+. ++|+.||+++|++....+..+.....+..+.+.+|++.
T Consensus 818 L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 818 I-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp C-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred C-CCCCHHHC--CCCCEEECCCCCCCCCCHHHCCCCCCCHHEEECCCCCC
T ss_conf 8-74087662--87788999799888117677256542311034688865
Done!