BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001613
(1044 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DGS|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Daz- Associated Protein 1
Length = 99
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 548 SKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAA 607
+KIFVGG+P L YF+K FG + + V + EKQ RGFGF+TF+ E+S
Sbjct: 11 NKIFVGGIPHNCGETELREYFKK-FGVVTEV-VMIYDAEKQR-PRGFGFITFEDEQSVDQ 67
Query: 608 AVQARFVTIMGKEVEIKSAVPKE 630
AV F IMGK+VE+K A P++
Sbjct: 68 AVNMHFHDIMGKKVEVKRAEPRD 90
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 12/137 (8%)
Query: 288 VGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRI 347
+G L+ A +AG +D + IL+ + G++ LH A KT H+ I
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDWL---GHTPLHLAAKTG-----HL---EI 62
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V +LLK+GA V+ + G T LH+AA +G+ + +E L++ D +N K TPL A
Sbjct: 63 VEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGAD-VNAKDYEGFTPLHLAA 121
Query: 408 KNDHMVCAEVLLRWGAN 424
+ H+ EVLL++GA+
Sbjct: 122 YDGHLEIVEVLLKYGAD 138
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPL 403
Q+ V IL+ +GA V+ + LG T LH+AA +G+ + +E L++ D +N TPL
Sbjct: 26 QDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGAD-VNAWDNYGATPL 84
Query: 404 FFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFA 439
A N H+ EVLL+ GA+ + P+ A
Sbjct: 85 HLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLA 120
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 15/144 (10%)
Query: 278 VANGS---CTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKT 334
+ANG+ TD PL LA + G +++E+LLK G + LH A
Sbjct: 34 MANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLK---YGADVNAWDNYGATPLHLAADN 90
Query: 335 SMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINL 394
H+ IV +LLKHGA V+ ++ G T LH+AA G+ + +E L++ D +N
Sbjct: 91 G-----HL---EIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD-VNA 141
Query: 395 KTIMMETPLFFAVKNDHMVCAEVL 418
+ +T ++ N + AE+L
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 12/137 (8%)
Query: 288 VGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRI 347
+G L+ A +AG +D + IL+ + G + LH A +S H+ I
Sbjct: 14 LGKKLLEAARAGQDDEVRILIANGADVNAVDNT---GLTPLHLA-----AVSGHL---EI 62
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V +LLKHGA V + G T LH+AA +G+ + +E L++ D +N + TPL A
Sbjct: 63 VEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD-VNAFDMTGSTPLHLAA 121
Query: 408 KNDHMVCAEVLLRWGAN 424
H+ EVLL++GA+
Sbjct: 122 DEGHLEIVEVLLKYGAD 138
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPL 403
Q+ V IL+ +GA V+ + GLT LH+AA SG+ + +E L++ D ++ + TPL
Sbjct: 26 QDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD-VDAADVYGFTPL 84
Query: 404 FFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQ 442
A H+ EVLL++GA+ ++ P+ A +
Sbjct: 85 HLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADE 123
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 15/96 (15%)
Query: 291 PLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRIVGI 350
PL LA G +++E+LLK G++ LH A H+ IV +
Sbjct: 83 PLHLAAMTGHLEIVEVLLK---YGADVNAFDMTGSTPLHLAADEG-----HL---EIVEV 131
Query: 351 LLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIR 386
LLK+GA V+ Q+K G TA I+ +GN EDL +
Sbjct: 132 LLKYGADVNAQDKFGKTAFDISIDNGN----EDLAK 163
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 85 ALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTD 122
A VN V+ ++G+T LHLAA S VE+LLK A D
Sbjct: 38 ADVNAVD-NTGLTPLHLAAVSGHLEIVEVLLKHGADVD 74
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 12/137 (8%)
Query: 288 VGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRI 347
+G L+ A +AG +D + IL+ + G + LH A + H+ I
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDDS---GKTPLHLA-----AIKGHL---EI 62
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V +LLKHGA V+ +K+G T LH+AA G+ + +E L++ D +N TPL A
Sbjct: 63 VEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGAD-VNATDTYGFTPLHLAA 121
Query: 408 KNDHMVCAEVLLRWGAN 424
H+ EVLL++GA+
Sbjct: 122 DAGHLEIVEVLLKYGAD 138
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 15/144 (10%)
Query: 278 VANGS---CTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKT 334
+ANG+ D PL LA G +++E+LLK G++ LH A
Sbjct: 34 MANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKH---GADVNAADKMGDTPLHLA--- 87
Query: 335 SMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINL 394
L H+ IV +LLK+GA V+ + G T LH+AA +G+ + +E L++ D +N
Sbjct: 88 --ALYGHL---EIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD-VNA 141
Query: 395 KTIMMETPLFFAVKNDHMVCAEVL 418
+ +T ++ N + AE+L
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEIL 165
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPL 403
Q+ V IL+ +GA V+ ++ G T LH+AA G+ + +E L++ D +N M +TPL
Sbjct: 26 QDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD-VNAADKMGDTPL 84
Query: 404 FFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFA 439
A H+ EVLL+ GA+ + P+ A
Sbjct: 85 HLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLA 120
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 12/137 (8%)
Query: 288 VGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRI 347
+G L+ A +AG +D + IL+ + G + LH L+ H I
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNARDFT---GWTPLH--------LAAHFGHLEI 62
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V +LLK+GA V+ ++ LG+T LH+AA G+ + +E L++ D +N TPL A
Sbjct: 63 VEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD-VNASDSHGFTPLHLAA 121
Query: 408 KNDHMVCAEVLLRWGAN 424
K H+ EVLL+ GA+
Sbjct: 122 KRGHLEIVEVLLKNGAD 138
Score = 43.1 bits (100), Expect = 9e-04, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 291 PLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRIVGI 350
PL LA + G +++E+LLK+ G + LH A K H+ IV +
Sbjct: 83 PLHLAARRGHLEIVEVLLKNGADVNASDSH---GFTPLHLAAKRG-----HL---EIVEV 131
Query: 351 LLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDL 384
LLK+GA V+ Q+K G TA I+ +GN E L
Sbjct: 132 LLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 60.5 bits (145), Expect = 5e-09, Method: Composition-based stats.
Identities = 48/152 (31%), Positives = 75/152 (49%), Gaps = 12/152 (7%)
Query: 288 VGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRI 347
+G L+ A +AG +D + IL+ + G + LH A + H+ I
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKDKD---GYTPLHLAAREG-----HL---EI 50
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V +LLK GA V+ ++K G T LH+AA G+ + +E L++ D +N K TPL A
Sbjct: 51 VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAA 109
Query: 408 KNDHMVCAEVLLRWGANSEVLNLRRERPIDFA 439
+ H+ EVLL+ GA+ + + P D A
Sbjct: 110 REGHLEIVEVLLKAGADVNAQDKFGKTPFDLA 141
Score = 56.6 bits (135), Expect = 7e-08, Method: Composition-based stats.
Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 278 VANGS---CTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKT 334
+ANG+ DK PL LA + G +++E+LLK+ G + LH A +
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG---ADVNAKDKDGYTPLHLAARE 78
Query: 335 SMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINL 394
H+ IV +LLK GA V+ ++K G T LH+AA G+ + +E L++ D +N
Sbjct: 79 G-----HL---EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNA 129
Query: 395 KTIMMETPLFFAVKNDHMVCAEVL 418
+ +TP A++ H AEVL
Sbjct: 130 QDKFGKTPFDLAIREGHEDIAEVL 153
Score = 38.5 bits (88), Expect = 0.019, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 277 AVANGSCTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSM 336
A A+ + DK PL LA + G +++E+LLK+ G + LH A +
Sbjct: 57 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD---GYTPLHLAAREG- 112
Query: 337 GLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDL 384
H+ IV +LLK GA V+ Q+K G T +A G+ E L
Sbjct: 113 ----HL---EIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 91 EESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDG 128
++ G T LHLAA VE+LLK A + + KDG
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 91 EESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDG 128
++ G T LHLAA VE+LLK A + + KDG
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 101
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 60.5 bits (145), Expect = 5e-09, Method: Composition-based stats.
Identities = 48/152 (31%), Positives = 75/152 (49%), Gaps = 12/152 (7%)
Query: 288 VGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRI 347
+G L+ A +AG +D + IL+ + G + LH A + H+ I
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKDKD---GYTPLHLAAREG-----HL---EI 50
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V +LLK GA V+ ++K G T LH+AA G+ + +E L++ D +N K TPL A
Sbjct: 51 VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAA 109
Query: 408 KNDHMVCAEVLLRWGANSEVLNLRRERPIDFA 439
+ H+ EVLL+ GA+ + + P D A
Sbjct: 110 REGHLEIVEVLLKAGADVNAQDKFGKTPFDLA 141
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 278 VANGS---CTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKT 334
+ANG+ DK PL LA + G +++E+LLK+ G + LH A +
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG---ADVNAKDKDGYTPLHLAARE 78
Query: 335 SMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINL 394
H+ IV +LLK GA V+ ++K G T LH+AA G+ + +E L++ D +N
Sbjct: 79 G-----HL---EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNA 129
Query: 395 KTIMMETPLFFAVKNDHMVCAEVL 418
+ +TP A+ N + AEVL
Sbjct: 130 QDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 277 AVANGSCTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSM 336
A A+ + DK PL LA + G +++E+LLK+ G + LH A +
Sbjct: 57 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD---GYTPLHLAAREG- 112
Query: 337 GLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDL 384
H+ IV +LLK GA V+ Q+K G T +A +GN E L
Sbjct: 113 ----HL---EIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 91 EESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDG 128
++ G T LHLAA VE+LLK A + + KDG
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 91 EESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDG 128
++ G T LHLAA VE+LLK A + + KDG
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 101
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 59.7 bits (143), Expect = 8e-09, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 12/137 (8%)
Query: 288 VGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRI 347
+G L+ A +AG +D + IL+ + G++ LH L+ I I
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAHDDQ---GSTPLH--------LAAWIGHPEI 62
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V +LLKHGA V+ ++ G T LH+AA +G+ + +E L++ D +N + TPL A
Sbjct: 63 VEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGAD-VNAQDAYGLTPLHLAA 121
Query: 408 KNDHMVCAEVLLRWGAN 424
H+ EVLL+ GA+
Sbjct: 122 DRGHLEIVEVLLKHGAD 138
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 15/144 (10%)
Query: 278 VANGS---CTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKT 334
+ANG+ D + PL LA G +++E+LLK G + LH A
Sbjct: 34 MANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTD---GWTPLHLAADN 90
Query: 335 SMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINL 394
H+ IV +LLK+GA V+ Q+ GLT LH+AA G+ + +E L++ D +N
Sbjct: 91 G-----HL---EIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD-VNA 141
Query: 395 KTIMMETPLFFAVKNDHMVCAEVL 418
+ +T ++ N + AE+L
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 12/137 (8%)
Query: 288 VGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRI 347
+G L+ A +AG +D + IL+ + G++ LH A + H+ I
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDTY---GDTPLHLAARVG-----HL---EI 62
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V +LLK+GA V+ + G T LH+AA G+ + +E L++ D +N + TPL A
Sbjct: 63 VEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD-VNADDTIGSTPLHLAA 121
Query: 408 KNDHMVCAEVLLRWGAN 424
H+ EVLL++GA+
Sbjct: 122 DTGHLEIVEVLLKYGAD 138
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 278 VANGS---CTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKT 334
+ANG+ D PL LA + G +++E+LLK+ G++ LH A K
Sbjct: 34 MANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFS---GSTPLHLAAKR 90
Query: 335 SMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINL 394
H+ IV +LLK+GA V+ + +G T LH+AA +G+ + +E L++ D +N
Sbjct: 91 G-----HL---EIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD-VNA 141
Query: 395 KTIMMETPLFFAVKNDHMVCAEVL 418
+ +T ++ N + AE+L
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEIL 165
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 372 AAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLR 431
AA +G + L+ D +N + +TPL A + H+ EVLL+ GA+ L+
Sbjct: 21 AARAGQDDEVRILMANGAD-VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFS 79
Query: 432 RERPIDFAKSQ 442
P+ A +
Sbjct: 80 GSTPLHLAAKR 90
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 58.2 bits (139), Expect = 3e-08, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 12/137 (8%)
Query: 288 VGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRI 347
+G L+ A +AG +D + IL+ + G + LH A + H+ I
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDKD---GYTPLHLAAREG-----HL---EI 62
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V +LLK GA V+ ++K G T LH+AA G+ + +E L++ D +N K TPL A
Sbjct: 63 VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAA 121
Query: 408 KNDHMVCAEVLLRWGAN 424
+ H+ EVLL+ GA+
Sbjct: 122 REGHLEIVEVLLKAGAD 138
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 278 VANGS---CTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKT 334
+ANG+ DK PL LA + G +++E+LLK+ G + LH A +
Sbjct: 34 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG---ADVNAKDKDGYTPLHLAARE 90
Query: 335 SMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINL 394
H+ IV +LLK GA V+ ++K G T LH+AA G+ + +E L++ D +N
Sbjct: 91 G-----HL---EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNA 141
Query: 395 KTIMMETPLFFAVKNDHMVCAEVL 418
+ +T ++ N + AE+L
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEIL 165
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 277 AVANGSCTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSM 336
A A+ + DK PL LA + G +++E+LLK+ G + LH A +
Sbjct: 69 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD---GYTPLHLAAREG- 124
Query: 337 GLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDL 384
H+ IV +LLK GA V+ Q+K G TA I+ +GN E L
Sbjct: 125 ----HL---EIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 91 EESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDG 128
++ G T LHLAA VE+LLK A + + KDG
Sbjct: 43 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 91 EESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDG 128
++ G T LHLAA VE+LLK A + + KDG
Sbjct: 76 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 113
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 12/137 (8%)
Query: 288 VGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRI 347
+G L+ A +AG +D + IL+ + N++ H T + L+ + I
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV----------NASDHVGW-TPLHLAAYFGHLEI 62
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V +LLK+GA V+ + LG+T LH+AA G+ + +E L++ D +N TPL A
Sbjct: 63 VEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGAD-VNANDHNGFTPLHLAA 121
Query: 408 KNDHMVCAEVLLRWGAN 424
H+ EVLL+ GA+
Sbjct: 122 NIGHLEIVEVLLKHGAD 138
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 291 PLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRIVGI 350
PL LA G +V+E+LLK+ N+ H T + L+ +I IV +
Sbjct: 83 PLHLAADRGHLEVVEVLLKNGADV----------NANDHNGF-TPLHLAANIGHLEIVEV 131
Query: 351 LLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDL 384
LLKHGA V+ Q+K G TA I+ +GN E L
Sbjct: 132 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 15/144 (10%)
Query: 278 VANGS---CTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKT 334
+ANG+ +D PL LA G +++E+LLK+ G + LH A
Sbjct: 34 MANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKN---GADVNADDSLGVTPLHLAADR 90
Query: 335 SMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINL 394
H+ +V +LLK+GA V+ + G T LH+AA G+ + +E L++ D +N
Sbjct: 91 G-----HL---EVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD-VNA 141
Query: 395 KTIMMETPLFFAVKNDHMVCAEVL 418
+ +T ++ N + AE+L
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 12/137 (8%)
Query: 288 VGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRI 347
+G L+ A +AG +D + IL+ + G + LH A H+ I
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDND---GYTPLHLAASNG-----HL---EI 62
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V +LLK+GA V+ + G+T LH+AA +G+ + +E L++ D +N TPL A
Sbjct: 63 VEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGAD-VNAYDNDGHTPLHLAA 121
Query: 408 KNDHMVCAEVLLRWGAN 424
K H+ EVLL+ GA+
Sbjct: 122 KYGHLEIVEVLLKHGAD 138
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 15/144 (10%)
Query: 278 VANGS---CTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKT 334
+ANG+ TD PL LA G +++E+LLK+ G + LH A T
Sbjct: 34 MANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKN---GADVNASDLTGITPLHLAAAT 90
Query: 335 SMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINL 394
H+ IV +LLKHGA V+ + G T LH+AA G+ + +E L++ D +N
Sbjct: 91 G-----HL---EIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD-VNA 141
Query: 395 KTIMMETPLFFAVKNDHMVCAEVL 418
+ +T ++ N + AE+L
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEIL 165
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPL 403
Q+ V IL+ +GA V+ + G T LH+AA +G+ + +E L++ D +N + TPL
Sbjct: 26 QDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGAD-VNASDLTGITPL 84
Query: 404 FFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFA 439
A H+ EVLL+ GA+ + P+ A
Sbjct: 85 HLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLA 120
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 12/137 (8%)
Query: 288 VGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRI 347
+G L+ A +AG +D + IL+ + G + LH A S H+ I
Sbjct: 14 LGRKLLEAARAGQDDEVRILMANGADVNAADNT---GTTPLHLA-----AYSGHL---EI 62
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V +LLKHGA V + G T LH+AA G+ + +E L++ D + + M TPL A
Sbjct: 63 VEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGM-TPLHLAA 121
Query: 408 KNDHMVCAEVLLRWGAN 424
K ++ EVLL+ GA+
Sbjct: 122 KWGYLEIVEVLLKHGAD 138
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPL 403
Q+ V IL+ +GA V+ + G T LH+AA SG+ + +E L++ D ++ + TPL
Sbjct: 26 QDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGAD-VDASDVFGYTPL 84
Query: 404 FFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFA 439
A H+ EVLL+ GA+ ++ P+ A
Sbjct: 85 HLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLA 120
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 278 VANGS---CTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKT 334
+ANG+ D PL LA +G +++E+LLK G + LH
Sbjct: 34 MANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHG---ADVDASDVFGYTPLH----- 85
Query: 335 SMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINL 394
L+ + IV +LLK+GA V+ + G+T LH+AA G + +E L++ D +N
Sbjct: 86 ---LAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD-VNA 141
Query: 395 KTIMMETPLFFAVKNDHMVCAEVL 418
+ +T ++ N + AE+L
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEIL 165
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 92 ESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDG 128
+S GMT LHLAA+ VE+LLK A + + K G
Sbjct: 110 DSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFG 146
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 56.6 bits (135), Expect = 7e-08, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 12/137 (8%)
Query: 288 VGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRI 347
+G L+ A +AG +D + IL+ + G + LH L+ + I
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAADVV---GWTPLH--------LAAYWGHLEI 62
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V +LLK+GA V+ + LG T LH+AA G+ + +E L++ D +N K TPL A
Sbjct: 63 VEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD-VNAKDDNGITPLHLAA 121
Query: 408 KNDHMVCAEVLLRWGAN 424
H+ EVLL++GA+
Sbjct: 122 NRGHLEIVEVLLKYGAD 138
Score = 49.7 bits (117), Expect = 8e-06, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 12/128 (9%)
Query: 291 PLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRIVGI 350
PL LA G +++E+LLK+ G++ LH L+ H IV +
Sbjct: 50 PLHLAAYWGHLEIVEVLLKNGADVNAYDTL---GSTPLH--------LAAHFGHLEIVEV 98
Query: 351 LLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKND 410
LLK+GA V+ ++ G+T LH+AA G+ + +E L++ D +N + +T ++ N
Sbjct: 99 LLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISINNG 157
Query: 411 HMVCAEVL 418
+ AE+L
Sbjct: 158 NEDLAEIL 165
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 12/137 (8%)
Query: 288 VGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRI 347
+G L+ A +AG +D + IL+ + G + LH + H+ I
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNANDWF---GITPLHLVVNNG-----HL---EI 62
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
+ +LLK+ A V+ +K G T LH+AA G+ + +E L++ D +N TPL A
Sbjct: 63 IEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD-VNAMDYQGYTPLHLAA 121
Query: 408 KNDHMVCAEVLLRWGAN 424
++ H+ EVLL++GA+
Sbjct: 122 EDGHLEIVEVLLKYGAD 138
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPL 403
Q+ V IL+ +GA V+ + G+T LH+ +G+ + +E L++ D +N TPL
Sbjct: 26 QDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD-VNASDKSGWTPL 84
Query: 404 FFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFA 439
A H+ EVLL++GA+ ++ + P+ A
Sbjct: 85 HLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLA 120
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
Query: 279 ANGSCTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGL 338
A+ + +DK PL LA G +++E+LLK G + LH A +
Sbjct: 71 ADVNASDKSGWTPLHLAAYRGHLEIVEVLLK---YGADVNAMDYQGYTPLHLAAEDG--- 124
Query: 339 SQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDL 384
H+ IV +LLK+GA V+ Q+K G TA I+ +GN E L
Sbjct: 125 --HL---EIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 291 PLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRIVGI 350
PL L G ++IE+LLK G + LH A H+ IV +
Sbjct: 50 PLHLVVNNGHLEIIEVLLK---YAADVNASDKSGWTPLHLA-----AYRGHL---EIVEV 98
Query: 351 LLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKND 410
LLK+GA V+ + G T LH+AA G+ + +E L++ D +N + +T ++ N
Sbjct: 99 LLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISIDNG 157
Query: 411 HMVCAEVL 418
+ AE+L
Sbjct: 158 NEDLAEIL 165
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 12/137 (8%)
Query: 288 VGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRI 347
+G L+ A +AG +D + IL+ + G + LH L + G H+ I
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDAS---GLTPLH--LAATYG---HL---EI 62
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V +LLKHGA V+ + +G T LH+AA G+ + +E L++ D +N +TPL A
Sbjct: 63 VEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD-VNAVDTWGDTPLHLAA 121
Query: 408 KNDHMVCAEVLLRWGAN 424
H+ EVLL+ GA+
Sbjct: 122 IMGHLEIVEVLLKHGAD 138
Score = 53.5 bits (127), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPL 403
Q+ V IL+ +GA V+ + GLT LH+AA G+ + +E L++ D +N IM TPL
Sbjct: 26 QDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIMGSTPL 84
Query: 404 FFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFA 439
A H+ EVLL+ GA+ ++ + P+ A
Sbjct: 85 HLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLA 120
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 15/144 (10%)
Query: 278 VANGS---CTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKT 334
+ANG+ TD PL LA G +++E+LLK G++ LH A
Sbjct: 34 MANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHG---ADVNAIDIMGSTPLHLA--- 87
Query: 335 SMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINL 394
L H+ IV +LLKHGA V+ + G T LH+AA G+ + +E L++ D +N
Sbjct: 88 --ALIGHL---EIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD-VNA 141
Query: 395 KTIMMETPLFFAVKNDHMVCAEVL 418
+ +T ++ N + AE+L
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 346 RIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFF 405
RIV +LL+HGA V ++K GL LH A G+ + E L+ K C+N + TPL
Sbjct: 72 RIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTE-LLLKHGACVNAMDLWQFTPLHE 130
Query: 406 AVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMR 445
A + + +LL GA+ ++N + +D A + ++R
Sbjct: 131 AASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELR 170
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 59/106 (55%), Gaps = 6/106 (5%)
Query: 326 SALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLI 385
+ALHCA+ S H + ++ +LL+ GA V+++NK +T LH+AA ++ +E ++
Sbjct: 213 TALHCAVA-----SLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVME-VL 266
Query: 386 RKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLR 431
K +N + +T L A H+ +LL +G++ +++L+
Sbjct: 267 HKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQ 312
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 12/137 (8%)
Query: 288 VGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRI 347
+G L+ A +AG +D + IL+ + N+ H +T + ++ + I
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAD----------ANAYDHYG-RTPLHMAAAVGHLEI 50
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V +LL++GA V+ + G T LH+AA G+ + +E L++ D +N K TPL+ A
Sbjct: 51 VEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD-VNAKDATGITPLYLAA 109
Query: 408 KNDHMVCAEVLLRWGAN 424
H+ EVLL+ GA+
Sbjct: 110 YWGHLEIVEVLLKHGAD 126
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 11/112 (9%)
Query: 279 ANGSCTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGL 338
A+ + D PL +A G +++E+LL++ G + LH L S+G
Sbjct: 26 ADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN---GTTPLH--LAASLG- 79
Query: 339 SQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPD 390
H+ IV +LLK+GA V+ ++ G+T L++AA G+ + +E L++ D
Sbjct: 80 --HL---EIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD 126
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Query: 279 ANGSCTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGL 338
A+ + D PL LA G +++E+LLK +A T + L
Sbjct: 59 ADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADV-----------NAKDATGITPLYL 107
Query: 339 SQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDL 384
+ + IV +LLKHGA V+ Q+K G TA I+ GN E L
Sbjct: 108 AAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 53.5 bits (127), Expect = 6e-07, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 12/137 (8%)
Query: 288 VGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRI 347
+G L+ A +AG +D + IL+ + G + LH L + G H+ I
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDAS---GLTPLH--LAATYG---HL---EI 62
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V +LLKHGA V+ + G T LH+AA G+ + +E L++ D +N +TPL A
Sbjct: 63 VEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD-VNAVDTWGDTPLHLAA 121
Query: 408 KNDHMVCAEVLLRWGAN 424
H+ EVLL+ GA+
Sbjct: 122 IMGHLEIVEVLLKHGAD 138
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPL 403
Q+ V IL+ +GA V+ + GLT LH+AA G+ + +E L++ D +N I TPL
Sbjct: 26 QDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIXGSTPL 84
Query: 404 FFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFA 439
A H+ EVLL+ GA+ ++ + P+ A
Sbjct: 85 HLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLA 120
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 46/144 (31%), Positives = 71/144 (49%), Gaps = 15/144 (10%)
Query: 278 VANGS---CTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKT 334
+ANG+ TD PL LA G +++E+LLK G++ LH A
Sbjct: 34 MANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIX---GSTPLHLA--- 87
Query: 335 SMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINL 394
L H+ IV +LLKHGA V+ + G T LH+AA G+ + +E L++ D +N
Sbjct: 88 --ALIGHL---EIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD-VNA 141
Query: 395 KTIMMETPLFFAVKNDHMVCAEVL 418
+ +T ++ N + AE+L
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 275 FGAVANGSCTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKT 334
+G AN PL LA Q G +++ +LL + G + LH +
Sbjct: 234 YGGSANAESVQGVT--PLHLAAQEGHAEMVALLLSKQANGNLGNKS---GLTPLHLVAQE 288
Query: 335 SMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINL 394
H+ + +L+KHG +V ++G T LH+A+ GN + ++ L++ + D +N
Sbjct: 289 G-----HV---PVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-VNA 339
Query: 395 KTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAK 440
KT + +PL A + H +LL+ GA+ ++ P+ AK
Sbjct: 340 KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAK 385
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 279 ANGSCTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGL 338
A+ + ++ KV PL +A +AG +V + LL++K + LHCA +
Sbjct: 38 ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD---QTPLHCAAR----- 89
Query: 339 SQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPD--CINLKT 396
I +V +LL++ A + G T LHIAA G+ + + L+ KE C+ K
Sbjct: 90 ---IGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 146
Query: 397 IMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQD----MRFLLKAAN 452
TPL A K + AE+LL A+ P+ A + ++ LL
Sbjct: 147 F---TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG 203
Query: 453 TCHT 456
+ H+
Sbjct: 204 SPHS 207
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 16/163 (9%)
Query: 291 PLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRIVGI 350
PL +A + D++++LL G + LH A K + Q +
Sbjct: 182 PLHVAVHHNNLDIVKLLLPRGGSPHSPAWN---GYTPLHIAAKQN--------QVEVARS 230
Query: 351 LLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKND 410
LL++G + ++ G+T LH+AA G+++ + L+ K+ + NL TPL +
Sbjct: 231 LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEG 289
Query: 411 HMVCAEVLLRWGANSEVLNLRRERPIDFAKSQD----MRFLLK 449
H+ A+VL++ G + P+ A ++FLL+
Sbjct: 290 HVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ 332
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 91 EESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDG 128
E G+T LHLAA+ A V LLL K+A ++ +K G
Sbjct: 241 ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 278
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 366 LTALHIAAGSGNSQALEDLIRK--EPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGA 423
LT LH+A+ G+ +++L+++ P+ N+K +ETPL A + H A+ LL+
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVK---VETPLHMAARAGHTEVAKYLLQ--- 68
Query: 424 NSEVLNLRRERPIDFAKSQDMRFLLK-AANTCHTNLAFL 461
N +N AK++D + L AA HTN+ L
Sbjct: 69 NKAKVN---------AKAKDDQTPLHCAARIGHTNMVKL 98
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 16/154 (10%)
Query: 291 PLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRIVGI 350
PL +A + G + + LL+ + G + LH A K + R+ +
Sbjct: 116 PLHIAAREGHVETVLALLEKEASQACMTKK---GFTPLHVAAKYG--------KVRVAEL 164
Query: 351 LLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRK--EPDCINLKTIMMETPLFFAVK 408
LL+ A + K GLT LH+A N ++ L+ + P TPL A K
Sbjct: 165 LLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGY---TPLHIAAK 221
Query: 409 NDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQ 442
+ + A LL++G ++ +++ P+ A +
Sbjct: 222 QNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE 255
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 53.1 bits (126), Expect = 7e-07, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 12/133 (9%)
Query: 291 PLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRIVGI 350
PL LA + G +V+++LL++ G + LH A + H+ +V +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKN---GRTPLHLAARNG-----HL---EVVKL 53
Query: 351 LLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKND 410
LL+ GA V+ ++K G T LH+AA +G+ + ++ L+ D +N K TPL A +N
Sbjct: 54 LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNG 112
Query: 411 HMVCAEVLLRWGA 423
H+ ++LL GA
Sbjct: 113 HLEVVKLLLEAGA 125
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 9/116 (7%)
Query: 324 GNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALED 383
G + LH A + H+ +V +LL+ GA V+ ++K G T LH+AA +G+ + ++
Sbjct: 2 GRTPLHLAARNG-----HL---EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 53
Query: 384 LIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFA 439
L+ D +N K TPL A +N H+ ++LL GA+ + P+ A
Sbjct: 54 LLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V LL++G+ + ++ G T LH A G+ + +E L++ + +N ++PL A
Sbjct: 26 VEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA-LVNTTGYQNDSPLHDAA 84
Query: 408 KNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLL 448
KN H+ ++LL +GA+ +N+ RP+D+ + M+ LL
Sbjct: 85 KNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLL 125
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 12/163 (7%)
Query: 287 KVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNR 346
++G LI A + G++D ++ LL++ G + LH A +
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLLEN---GADPNASDSDGRTPLHYAAENG--------HKE 51
Query: 347 IVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFA 406
IV +LL GA + ++ G T LH AA +G+ + ++ L+ K D N K TPL +A
Sbjct: 52 IVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP-NAKDSDGRTPLHYA 110
Query: 407 VKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLLK 449
+N H ++LL GA+ + P+D A+ ++K
Sbjct: 111 AENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVK 153
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 90 VEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDG 128
++S G T LH AAE+ V+LLL K A + + DG
Sbjct: 65 AKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 103
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 92 ESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDG 128
+S G T LH AAE+ V+LLL K A + + DG
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 90 VEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDG 128
++S G T LH AAE+ V+LLL K A + DG
Sbjct: 98 AKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDG 136
>pdb|1X4B|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous Nuclear
Ribonucleaoproteins A2B1
Length = 116
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEK 603
++F+ K+F+GGL F +SL Y+E +G + D V K+S RGFGFVTF
Sbjct: 25 EQFR-KLFIGGLSFETTEESLRNYYE-QWGKLTDCVVMRDPASKRS--RGFGFVTFSSMA 80
Query: 604 SAAAAVQARFVTIMGKEVEIKSAVPKE 630
AA+ AR +I G+ VE K AV +E
Sbjct: 81 EVDAAMAARPHSIDGRVVEPKRAVARE 107
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 12/139 (8%)
Query: 286 KKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQN 345
+ +G L+ A AG +D + IL+ + G + LH A Q
Sbjct: 4 QDLGKKLLEAAAAGQDDEVRILMANGADVNATDDN---GLTPLHLAAANG--------QL 52
Query: 346 RIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFF 405
IV +LLK+GA V+ + G+T LH+AA G+ + +E L++ D +N TPL
Sbjct: 53 EIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGAD-VNAYDRAGWTPLHL 111
Query: 406 AVKNDHMVCAEVLLRWGAN 424
A + + EVLL+ GA+
Sbjct: 112 AALSGQLEIVEVLLKHGAD 130
Score = 49.7 bits (117), Expect = 8e-06, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 278 VANGS---CTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKT 334
+ANG+ TD PL LA G +++E+LLK+ G + LH A
Sbjct: 26 MANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSA---GITPLHLA--- 79
Query: 335 SMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINL 394
H+ IV +LLKHGA V+ ++ G T LH+AA SG + +E L++ D +N
Sbjct: 80 --AYDGHL---EIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD-VNA 133
Query: 395 KTIMMETPLFFAVKNDHMVCAEVL 418
+ + T ++ AE+L
Sbjct: 134 QDALGLTAFDISINQGQEDLAEIL 157
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPL 403
Q+ V IL+ +GA V+ + GLT LH+AA +G + +E L++ D +N TPL
Sbjct: 18 QDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD-VNASDSAGITPL 76
Query: 404 FFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFA 439
A + H+ EVLL+ GA+ + P+ A
Sbjct: 77 HLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLA 112
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPL 403
Q+ V IL+ +GA V+ + G+T LH+AA G+ + +E L++ D +N + I TPL
Sbjct: 26 QDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNARDIWGRTPL 84
Query: 404 FFAVKNDHMVCAEVLLRWGAN 424
A H+ EVLL +GA+
Sbjct: 85 HLAATVGHLEIVEVLLEYGAD 105
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 12/131 (9%)
Query: 288 VGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRI 347
+G L+ AT+AG +D + IL+ + G + LH A K H+ I
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDA---GVTPLHLAAKRG-----HL---EI 62
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V +LLKHGA V+ ++ G T LH+AA G+ + +E L+ D +N + +T ++
Sbjct: 63 VEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGAD-VNAQDKFGKTAFDISI 121
Query: 408 KNDHMVCAEVL 418
N + AE+L
Sbjct: 122 DNGNEDLAEIL 132
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 12/137 (8%)
Query: 288 VGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRI 347
+G L+ A +AG +D + IL+ + G + LH A + H+ I
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDAS---GWTPLHLA-----AFNGHL---EI 62
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V +LLK+GA V+ + G+T L +AA G+ + +E L++ D +N + TPL A
Sbjct: 63 VEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAA 121
Query: 408 KNDHMVCAEVLLRWGAN 424
H+ EVLL+ GA+
Sbjct: 122 MFGHLEIVEVLLKNGAD 138
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V IL+ +GA V+ ++ G T LH+AA +G+ + +E L++ D +N TPL A
Sbjct: 30 VRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAA 88
Query: 408 KNDHMVCAEVLLRWGANSEVLNLRRERPIDFA 439
H+ EVLL+ GA+ ++ P+ A
Sbjct: 89 LFGHLEIVEVLLKNGADVNANDMEGHTPLHLA 120
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 15/144 (10%)
Query: 278 VANGS---CTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKT 334
+ANG+ D PL LA G +++E+LLK+ N+ H + T
Sbjct: 34 MANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV----------NAVDHAGM-T 82
Query: 335 SMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINL 394
+ L+ IV +LLK+GA V+ + G T LH+AA G+ + +E L++ D +N
Sbjct: 83 PLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNA 141
Query: 395 KTIMMETPLFFAVKNDHMVCAEVL 418
+ +T ++ N + AE+L
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 12/163 (7%)
Query: 287 KVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNR 346
++G LI A + G++D ++ L+++ G + LH A +
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLIEN---GADVNASDSDGRTPLHHAAENG--------HKE 51
Query: 347 IVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFA 406
+V +L+ GA V+ ++ G T LH AA +G+ + ++ LI K D +N K TPL A
Sbjct: 52 VVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHA 110
Query: 407 VKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLLK 449
+N H ++L+ GA+ + P+D A+ ++K
Sbjct: 111 AENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVK 153
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 12/163 (7%)
Query: 287 KVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNR 346
++G LI A + G++D ++ L+++ G + LH A K
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLIENGADVNASDSD---GRTPLHYAAKEG--------HKE 51
Query: 347 IVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFA 406
IV +L+ GA V+ ++ G T LH AA G+ + ++ LI K D +N K TPL +A
Sbjct: 52 IVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYA 110
Query: 407 VKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLLK 449
K H ++L+ GA+ + P+D A+ ++K
Sbjct: 111 AKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVK 153
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 12/163 (7%)
Query: 287 KVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNR 346
++G LI A + G++D ++ LL++ G + LH A +
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLLEN---GADVNASDSDGKTPLHLAAENG--------HKE 51
Query: 347 IVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFA 406
+V +LL GA + ++ G T LH+AA +G+ + ++ L+ + D N K +TPL A
Sbjct: 52 VVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP-NAKDSDGKTPLHLA 110
Query: 407 VKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLLK 449
+N H ++LL GA+ + P+D A+ ++K
Sbjct: 111 AENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVK 153
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 90 VEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDG 128
++S G T LHLAAE+ V+LLL + A + + DG
Sbjct: 65 AKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 103
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 92 ESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDG 128
+S G T LHLAAE+ V+LLL + A + + DG
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 90 VEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDG 128
++S G T LHLAAE+ V+LLL + A + DG
Sbjct: 98 AKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDG 136
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPL 403
Q+ V IL+ +GA V+ + G+T LH+AA G+ + +E L++ D +N I TPL
Sbjct: 26 QDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDIWGRTPL 84
Query: 404 FFAVKNDHMVCAEVLLRWGAN 424
A H+ EVLL +GA+
Sbjct: 85 HLAATVGHLEIVEVLLEYGAD 105
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 12/131 (9%)
Query: 288 VGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRI 347
+G L+ AT+AG +D + IL+ + G + LH A K H+ I
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDA---GVTPLHLAAKRG-----HL---EI 62
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V +LLKHGA V+ + G T LH+AA G+ + +E L+ D +N + +T ++
Sbjct: 63 VEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGAD-VNAQDKFGKTAFDISI 121
Query: 408 KNDHMVCAEVL 418
N + AE+L
Sbjct: 122 DNGNEDLAEIL 132
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPL 403
Q+ V IL+ +GA V+ ++K+GLT LH+AA + + + +E L++ D +N + ETPL
Sbjct: 26 QDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD-VNAIDAIGETPL 84
Query: 404 FFAVKNDHMVCAEVLLRWGAN 424
H+ EVLL+ GA+
Sbjct: 85 HLVAMYGHLEIVEVLLKHGAD 105
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 14/110 (12%)
Query: 278 VANGS--CTDKKVG-PPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKT 334
+ANG+ + KVG PL LA +++E+LLK+ G + LH
Sbjct: 34 MANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAI---GETPLHL---- 86
Query: 335 SMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDL 384
+ + H+ IV +LLKHGA V+ Q+K G TA I+ +GN E L
Sbjct: 87 -VAMYGHL---EIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 33.1 bits (74), Expect = 0.76, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 372 AAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLR 431
AA +G + L+ D +N + + TPL A NDH+ EVLL+ GA+ ++
Sbjct: 21 AARAGQDDEVRILMANGAD-VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAI 79
Query: 432 RERPI 436
E P+
Sbjct: 80 GETPL 84
>pdb|2CQD|A Chain A, Solution Structure Of The Rna Recognition Motif In Rna-
Binding Region Containing Protein 1
Length = 116
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 548 SKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQS-VSRGFGFVTFKHEKSAA 606
+KIFVGGLP+ SL YFE FG IE+A V T++Q+ SRG+GFVT +A
Sbjct: 18 TKIFVGGLPYHTTDASLRKYFEG-FGDIEEAVVI---TDRQTGKSRGYGFVTMADRAAAE 73
Query: 607 AAVQARFVTIMGKEVEIKSA 626
A + I G++ + A
Sbjct: 74 RACKDPNPIIDGRKANVNLA 93
>pdb|1L3K|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
pdb|1U1K|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt 7da
Ggg); A Human Telomeric Repeat Containing
7-Deaza-Adenine
pdb|1U1L|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt Prn
Ggg); A Human Telomeric Repeat Containing Nebularine
pdb|1U1M|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 7gu
Gg); A Human Telomeric Repeat Containing 7-Deaza-Guanine
pdb|1U1N|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta (Prn)
Gg); A Human Telomeric Repeat Containing Nebularine
pdb|1U1O|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggttag(Di)g); A Human Telomeric Repeat Containing
Inosine
pdb|1U1P|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 2pr
Gg); A Human Telomeric Repeat Containing 2-Aminopurine
pdb|1U1Q|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggtta(Di)gg); A Human Telomeric Repeat Containing
Inosine
pdb|1U1R|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(2pr)
G); A Human Telomeric Repeat Containing 2-Aminopurine
Length = 196
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAA 608
K+F+GGL F +SL +FE+ +G + D V K+S RGFGFVT+ + AA
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQ-WGTLTDCVVMRDPNTKRS--RGFGFVTYATVEEVDAA 71
Query: 609 VQARFVTIMGKEVEIKSAVPKE 630
+ AR + G+ VE K AV +E
Sbjct: 72 MNARPHKVDGRVVEPKRAVSRE 93
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQS-VSRGFGFVTFKHEKSAAA 607
KIFVGG+ + L YFE+ +G IE V E T++ S RGF FVTF S
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQ-YGKIE---VIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Query: 608 AVQARFVTIMGKEVEIKSAVPKEVL 632
V ++ T+ G E++ A+ K+ +
Sbjct: 162 IVIQKYHTVNGHNCEVRKALSKQEM 186
>pdb|1PGZ|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(6-Mi)
G); A Human Telomeric Repeat Containing 6-Methyl-8-(2-
Deoxy-Beta-Ribofuranosyl)isoxanthopteridine (6-Mi)
Length = 195
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAA 608
K+F+GGL F +SL +FE+ +G + D V K+S RGFGFVT+ + AA
Sbjct: 14 KLFIGGLSFETTDESLRSHFEQ-WGTLTDCVVMRDPNTKRS--RGFGFVTYATVEEVDAA 70
Query: 609 VQARFVTIMGKEVEIKSAVPKE 630
+ AR + G+ VE K AV +E
Sbjct: 71 MNARPHKVDGRVVEPKRAVSRE 92
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQS-VSRGFGFVTFKHEKSAAA 607
KIFVGG+ + L YFE+ +G IE V E T++ S RGF FVTF S
Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQ-YGKIE---VIEIMTDRGSGKKRGFAFVTFDDHDSVDK 160
Query: 608 AVQARFVTIMGKEVEIKSAVPKEVL 632
V ++ T+ G E++ A+ K+ +
Sbjct: 161 IVIQKYHTVNGHNCEVRKALSKQEM 185
>pdb|1HA1|A Chain A, Hnrnp A1 (Rbd1,2) From Homo Sapiens
Length = 184
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAA 608
K+F+GGL F +SL +FE+ +G + D V K+S RGFGFVT+ + AA
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQ-WGTLTDCVVMRDPNTKRS--RGFGFVTYATVEEVDAA 71
Query: 609 VQARFVTIMGKEVEIKSAVPKE 630
+ AR + G+ VE K AV +E
Sbjct: 72 MNARPHKVDGRVVEPKRAVSRE 93
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQS-VSRGFGFVTFKHEKSAAA 607
KIFVGG+ + L YFE+ +G IE V E T++ S RGF FVTF S
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQ-YGKIE---VIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Query: 608 AVQARFVTIMGKEVEIKSAVPKE 630
V ++ T+ G E++ A+ K+
Sbjct: 162 IVIQKYHTVNGHNCEVRKALSKQ 184
>pdb|1UP1|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
Length = 182
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAA 608
K+F+GGL F +SL +FE+ +G + D V K+S RGFGFVT+ + AA
Sbjct: 13 KLFIGGLSFETTDESLRSHFEQ-WGTLTDCVVMRDPNTKRS--RGFGFVTYATVEEVDAA 69
Query: 609 VQARFVTIMGKEVEIKSAVPKE 630
+ AR + G+ VE K AV +E
Sbjct: 70 MNARPHKVDGRVVEPKRAVSRE 91
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQS-VSRGFGFVTFKHEKSAAA 607
KIFVGG+ + L YFE+ +G IE V E T++ S RGF FVTF S
Sbjct: 104 KIFVGGIKEDTEEHHLRDYFEQ-YGKIE---VIEIMTDRGSGKKRGFAFVTFDDHDSVDK 159
Query: 608 AVQARFVTIMGKEVEIKSAVPKE 630
V ++ T+ G E++ A+ K+
Sbjct: 160 IVIQKYHTVNGHNCEVRKALSKQ 182
>pdb|2UP1|A Chain A, Structure Of Up1-Telomeric Dna Complex
pdb|1PO6|A Chain A, Crystal Structure Of Up1 Complexed With
D(Tagg(6mi)ttaggg): A Human Telomeric Repeat Containing
6-Methyl-8-(2-Deoxy-
Beta-Ribofuranosyl)isoxanthopteridine (6mi)
Length = 183
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAA 608
K+F+GGL F +SL +FE+ +G + D V K+S RGFGFVT+ + AA
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQ-WGTLTDCVVMRDPNTKRS--RGFGFVTYATVEEVDAA 64
Query: 609 VQARFVTIMGKEVEIKSAVPKE 630
+ AR + G+ VE K AV +E
Sbjct: 65 MNARPHKVDGRVVEPKRAVSRE 86
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQS-VSRGFGFVTFKHEKSAAA 607
KIFVGG+ + L YFE+ +G IE V E T++ S RGF FVTF S
Sbjct: 99 KIFVGGIKEDTEEHHLRDYFEQ-YGKIE---VIEIMTDRGSGKKRGFAFVTFDDHDSVDK 154
Query: 608 AVQARFVTIMGKEVEIKSAVPKE 630
V ++ T+ G E++ A+ K+
Sbjct: 155 IVIQKYHTVNGHNCEVRKALSKQ 177
>pdb|2LYV|A Chain A, Solution Structure Of The Two Rrm Domains Of Hnrnp A1
(up1) Using Segmental Isotope Labeling
Length = 197
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAA 608
K+F+GGL F +SL +FE+ +G + D V K+S RGFGFVT+ + AA
Sbjct: 16 KLFIGGLSFETTDESLRSHFEQ-WGTLTDCVVMRDPNTKRS--RGFGFVTYATVEEVDAA 72
Query: 609 VQARFVTIMGKEVEIKSAVPKE 630
+ AR + G+ VE K AV +E
Sbjct: 73 MNARPHKVDGRVVEPKRAVSRE 94
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQS-VSRGFGFVTFKHEKSAAA 607
KIFVGG+ + L YFE+ +G IE V E T++ S RGF FVTF S
Sbjct: 107 KIFVGGIKEDTEEHHLRDYFEQ-YGKIE---VIEIMTDRGSGKKRGFAFVTFDDHDSVDK 162
Query: 608 AVQARFVTIMGKEVEIKSAVPKEVL 632
V ++ T+ G E++ A+ K+ +
Sbjct: 163 IVIQKYHTVNGHNCEVRKALSKQEM 187
>pdb|2DH8|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain In
Daz-Associated Protein 1
Length = 105
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAA 608
K+FVGGL + ++L YF + +G + D + + +T QS RGFGFV FK
Sbjct: 18 KLFVGGLDWSTTQETLRSYFSQ-YGEVVDCVIMKDKTTNQS--RGFGFVKFKDPNCVGTV 74
Query: 609 VQARFVTIMGKEVEIKSAVPK 629
+ +R T+ G+ ++ K P+
Sbjct: 75 LASRPHTLDGRNIDPKPCTPR 95
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 291 PLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRIVGI 350
PL LAT G +++E+LLK+ +A+ T + L+ I I +
Sbjct: 50 PLYLATAHGHLEIVEVLLKNGADV-----------NAVDAIGFTPLHLAAFIGHLEIAEV 98
Query: 351 LLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDL 384
LLKHGA V+ Q+K G TA I+ G+GN E L
Sbjct: 99 LLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 46.6 bits (109), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPL 403
Q+ V IL+ +GA V+ +++ GLT L++A G+ + +E L++ D +N + TPL
Sbjct: 26 QDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPL 84
Query: 404 FFAVKNDHMVCAEVLLRWGAN 424
A H+ AEVLL+ GA+
Sbjct: 85 HLAAFIGHLEIAEVLLKHGAD 105
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 12/131 (9%)
Query: 288 VGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRI 347
+G L+ A +AG +D + IL+ + G + L+ L T+ G H+ I
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEY---GLTPLY--LATAHG---HL---EI 62
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V +LLK+GA V+ + +G T LH+AA G+ + E L++ D +N + +T ++
Sbjct: 63 VEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISI 121
Query: 408 KNDHMVCAEVL 418
N + AE+L
Sbjct: 122 GNGNEDLAEIL 132
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 12/131 (9%)
Query: 288 VGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRI 347
+G L+ AT+AG +D + IL+ + G + LH A K H+ I
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDA---GVTPLHLAAKRG-----HL---EI 62
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V +LLKHGA V+ + G T LH+AA G+ + +E L+ D +N + +T ++
Sbjct: 63 VEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGAD-VNAQDKFGKTAFDISI 121
Query: 408 KNDHMVCAEVL 418
N + AE+L
Sbjct: 122 DNGNEDLAEIL 132
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPL 403
Q+ V IL+ +GA V+ + G+T LH+AA G+ + +E L++ D +N TPL
Sbjct: 26 QDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDSWGRTPL 84
Query: 404 FFAVKNDHMVCAEVLLRWGAN 424
A H+ EVLL +GA+
Sbjct: 85 HLAATVGHLEIVEVLLEYGAD 105
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Query: 324 GNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALED 383
G + LH A + H+ +V +LL+ GA V+ ++K G T LH+AA +G+ + ++
Sbjct: 2 GRTPLHLAARNG-----HL---EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 53
Query: 384 LIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGA 423
L+ D +N K TPL A +N H+ ++LL GA
Sbjct: 54 LLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 37.4 bits (85), Expect = 0.044, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 365 GLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGAN 424
G T LH+AA +G+ + ++ L+ D +N K TPL A +N H+ ++LL GA+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 425 SEVLNLRRERPIDFA 439
+ P+ A
Sbjct: 61 VNAKDKNGRTPLHLA 75
>pdb|2MSS|A Chain A, Musashi1 Rbd2, Nmr
pdb|2MST|A Chain A, Musashi1 Rbd2, Nmr
Length = 75
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 550 IFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAV 609
IFVGGL + + YFE+ FG ++DA + +T + RGFGFVTF+ E
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQ-FGKVDDAMLMFDKTTNRH--RGFGFVTFESEDIVEKVC 58
Query: 610 QARFVTIMGKEVEIKSA 626
+ F I K VE K A
Sbjct: 59 EIHFHEINNKMVECKKA 75
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 12/131 (9%)
Query: 288 VGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRI 347
+G L+ A +AG +D + IL+ + +AL T + L+ + I
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV-----------NALDEDGLTPLHLAAQLGHLEI 62
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V +LLK+GA V+ ++ G+T LH+AA G+ + +E L++ D +N + +T ++
Sbjct: 63 VEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISI 121
Query: 408 KNDHMVCAEVL 418
N + AE+L
Sbjct: 122 DNGNEDLAEIL 132
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPL 403
Q+ V IL+ +GA V+ ++ GLT LH+AA G+ + +E L++ D +N + TPL
Sbjct: 26 QDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD-VNAEDNFGITPL 84
Query: 404 FFAVKNDHMVCAEVLLRWGAN 424
A H+ EVLL+ GA+
Sbjct: 85 HLAAIRGHLEIVEVLLKHGAD 105
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 12/131 (9%)
Query: 288 VGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRI 347
+G L+ A +AG +D + IL+ + GN+ LH A H+ I
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNANDRK---GNTPLHLAADYD-----HL---EI 62
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V +LLKHGA V+ + G T LH+AA G+ + +E L++ D +N + +T ++
Sbjct: 63 VEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISI 121
Query: 408 KNDHMVCAEVL 418
N + AE+L
Sbjct: 122 DNGNEDLAEIL 132
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 278 VANGS---CTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKT 334
+ANG+ D+K PL LA +++E+LLK G++ LH A
Sbjct: 34 MANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND---GSTPLHLA--- 87
Query: 335 SMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDL 384
L H+ IV +LLKHGA V+ Q+K G TA I+ +GN E L
Sbjct: 88 --ALFGHL---EIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPL 403
Q+ V IL+ +GA V+ ++ G T LH+AA + + +E L++ D +N TPL
Sbjct: 26 QDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD-VNAHDNDGSTPL 84
Query: 404 FFAVKNDHMVCAEVLLRWGAN 424
A H+ EVLL+ GA+
Sbjct: 85 HLAALFGHLEIVEVLLKHGAD 105
>pdb|2CJK|A Chain A, Structure Of The Rna Binding Domain Of Hrp1 In Complex
With Rna
pdb|2KM8|C Chain C, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 167
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAA 608
K+F+GGL + D+L YF K +G + D ++ + SRGFGF++F+ S
Sbjct: 5 KMFIGGLNWDTTEDNLREYFGK-YGTVTDLKI--MKDPATGRSRGFGFLSFEKPSSVDEV 61
Query: 609 VQARFVTIMGKEVEIKSAVPKE 630
V+ + + + GK ++ K A+P++
Sbjct: 62 VKTQHI-LDGKVIDPKRAIPRD 82
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEK 603
Q+ KIFVGG+ + +F + +G I DA++ + QS RGFGFVT+
Sbjct: 84 QDKTGKIFVGGIGPDVRPKEFEEFFSQ-WGTIIDAQLMLDKDTGQS--RGFGFVTYDSAD 140
Query: 604 SAAAAVQARFVTIMGKEVEIKSAVPK 629
+ Q +F+ +++EIK A P+
Sbjct: 141 AVDRVCQNKFIDFKDRKIEIKRAEPR 166
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 291 PLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRIVGI 350
PL LA G +++E+LLK+ G + LH A + H+ IV +
Sbjct: 50 PLHLAAMLGHLEIVEVLLKNGADVNATGNT---GRTPLHLA-----AWADHL---EIVEV 98
Query: 351 LLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDL 384
LLKHGA V+ Q+K G TA I+ +GN E L
Sbjct: 99 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPL 403
Q+ V IL +GA V+ + G T LH+AA G+ + +E L++ D +N TPL
Sbjct: 26 QDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD-VNATGNTGRTPL 84
Query: 404 FFAVKNDHMVCAEVLLRWGAN 424
A DH+ EVLL+ GA+
Sbjct: 85 HLAAWADHLEIVEVLLKHGAD 105
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 288 VGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRI 347
+G L+ A +AG +D + IL + G++ LH A + H+ I
Sbjct: 14 LGKKLLEAARAGQDDEVRILTANGADVNANDYW---GHTPLHLA-----AMLGHL---EI 62
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V +LLK+GA V+ G T LH+AA + + + +E L++ D +N + +T ++
Sbjct: 63 VEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGAD-VNAQDKFGKTAFDISI 121
Query: 408 KNDHMVCAEVL 418
N + AE+L
Sbjct: 122 DNGNEDLAEIL 132
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 347 IVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLF-F 405
+V LL+HGA V ++K GL LH A G+ + E L+ K +N+ + TPL
Sbjct: 59 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE-LLVKHGAVVNVADLWKFTPLHEA 117
Query: 406 AVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQD 443
A K + +C ++LL+ GA+ N P+D K D
Sbjct: 118 AAKGKYEIC-KLLLQHGADPTKKNRDGNTPLDLVKDGD 154
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 347 IVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLF-F 405
+V LL+HGA V ++K GL LH A G+ + E L+ K +N+ + TPL
Sbjct: 57 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE-LLVKHGAVVNVADLWKFTPLHEA 115
Query: 406 AVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQD 443
A K + +C ++LL+ GA+ N P+D K D
Sbjct: 116 AAKGKYEIC-KLLLQHGADPTKKNRDGNTPLDLVKDGD 152
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 347 IVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLF-F 405
+V LL+HGA V ++K GL LH A G+ + E L+ K +N+ + TPL
Sbjct: 61 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE-LLVKHGAVVNVADLWKFTPLHEA 119
Query: 406 AVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQD 443
A K + +C ++LL+ GA+ N P+D K D
Sbjct: 120 AAKGKYEIC-KLLLQHGADPTKKNRDGNTPLDLVKDGD 156
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 14/143 (9%)
Query: 278 VANGS--CTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTS 335
+ANG+ TD PL LA Q G E+LL++ + LH A S
Sbjct: 22 MANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD---RTPLHMA--AS 76
Query: 336 MGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLK 395
G IV +LLKHGA V+ ++ L +TALH A + + +E LI+ D ++ +
Sbjct: 77 EG------HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQ 129
Query: 396 TIMMETPLFFAVKNDHMVCAEVL 418
+ +T ++ N + AE+L
Sbjct: 130 SKFCKTAFDISIDNGNEDLAEIL 152
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPL 403
Q+ V IL+ +GA + + LG + LH+AA G+ E L+R + +T + TPL
Sbjct: 14 QDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGV-SRDARTKVDRTPL 71
Query: 404 FFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQD----MRFLLKAANTCHTNLA 459
A H EVLL+ GA+ ++ + + +A + + L+K HT
Sbjct: 72 HMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK 131
Query: 460 F 460
F
Sbjct: 132 F 132
>pdb|2XS2|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Rna, Uuguucuu
Length = 102
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 550 IFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAV 609
+FVGG+ +D + +F + +G +++ ++ T++ VS+G+GFV+F ++ V
Sbjct: 12 VFVGGIDVRMDETEIRSFFAR-YGSVKEVKII---TDRTGVSKGYGFVSFYNDVDVQKIV 67
Query: 610 QARFVTIMGKEVEIKSAVPKEVL 632
+++ + GK++++ A+ K+ L
Sbjct: 68 ESQ-INFHGKKLKLGPAIRKQNL 89
>pdb|2XSF|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like
Length = 89
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 550 IFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAV 609
+FVGG+ +D + +F + +G +++ ++ T++ VS+G+GFV+F ++ V
Sbjct: 13 VFVGGIDVRMDETEIRSFFAR-YGSVKEVKII---TDRTGVSKGYGFVSFYNDVDVQKIV 68
Query: 610 QARFVTIMGKEVEIKSAVPKE 630
+++ + GK++++ A+ K+
Sbjct: 69 ESQ-INFHGKKLKLGPAIRKQ 88
>pdb|2XS5|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Mvh Rna, Uguuc
pdb|2XS5|B Chain B, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Mvh Rna, Uguuc
pdb|2XS7|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Sycp3 Rna, Uuguuu
Length = 87
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 550 IFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAV 609
+FVGG+ +D + +F + +G +++ ++ T++ VS+G+GFV+F ++ V
Sbjct: 12 VFVGGIDVRMDETEIRSFFAR-YGSVKEVKII---TDRTGVSKGYGFVSFYNDVDVQKIV 67
Query: 610 QARFVTIMGKEVEIKSAVPKE 630
+++ + GK++++ A+ K+
Sbjct: 68 ESQ-INFHGKKLKLGPAIRKQ 87
>pdb|1X5S|A Chain A, Solution Structure Of Rrm Domain In A18 Hnrnp
Length = 102
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 547 KSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAA 606
+ K+FVGGL F + SL F K+ E V + +T++ SRGFGFVTF++ A
Sbjct: 12 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQR---SRGFGFVTFENIDDAK 68
Query: 607 AAVQA-RFVTIMGKEVEIKSA 626
A+ A ++ G+++ + A
Sbjct: 69 DAMMAMNGKSVDGRQIRVDQA 89
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 9/135 (6%)
Query: 324 GNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALED 383
G S LH A + ++ +V +L+ GA ++ N+ T LH+AA G+ ++
Sbjct: 34 GFSPLHWACREG--------RSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 384 LIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQD 443
L++ + D IN PL +A AE L+ GA + N E P+D AK+
Sbjct: 86 LLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPL 144
Query: 444 MRFLLKAANTCHTNL 458
L + A NL
Sbjct: 145 RELLRERAEKMGQNL 159
Score = 32.7 bits (73), Expect = 0.97, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 358 VSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEV 417
++Q + G + LH A G S +E LI + IN+ +TPL A + H +
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 418 LLRWGANSEVLNLRRERPIDFA 439
LL++ A+ +N P+ +A
Sbjct: 86 LLQYKADINAVNEHGNVPLHYA 107
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 9/135 (6%)
Query: 324 GNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALED 383
G S LH A + ++ +V +L+ GA ++ N+ T LH+AA G+ ++
Sbjct: 39 GFSPLHWACREG--------RSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 384 LIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQD 443
L++ + D IN PL +A AE L+ GA + N E P+D AK+
Sbjct: 91 LLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPL 149
Query: 444 MRFLLKAANTCHTNL 458
L + A NL
Sbjct: 150 RELLRERAEKMGQNL 164
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 358 VSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEV 417
++Q + G + LH A G S +E LI + IN+ +TPL A + H +
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 418 LLRWGANSEVLNLRRERPIDFA 439
LL++ A+ +N P+ +A
Sbjct: 91 LLQYKADINAVNEHGNVPLHYA 112
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 73/184 (39%), Gaps = 48/184 (26%)
Query: 276 GAVANGSCTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTS 335
GA A D+ V PL LA Q G V++ LL S GN+ L A
Sbjct: 109 GANAGARNADQAV--PLHLACQQGHFQVVKCLLDSNAKPNKKDLS---GNTPLIYACSGG 163
Query: 336 MGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLK 395
+ +V +LL+HGA ++ N G TALH E +I K
Sbjct: 164 --------HHELVALLLQHGASINASNNKGNTALH-----------EAVIEK-------- 196
Query: 396 TIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFA-KSQDMRFLLKAANTC 454
H+ E+LL GA+ +VLN R+ +D A ++ + LL+ +C
Sbjct: 197 ---------------HVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSC 241
Query: 455 HTNL 458
+L
Sbjct: 242 VASL 245
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 8/155 (5%)
Query: 347 IVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFA 406
++ +LLKHGA +N LH+A G+ Q ++ L+ N K + TPL +A
Sbjct: 101 LIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYA 159
Query: 407 VKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLLKAANTCHTNLAFLNQEKQ 466
H +LL+ GA+ N + + A + F+++ ++ LN+ +Q
Sbjct: 160 CSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNK-RQ 218
Query: 467 NASLESDEDISGTCEAL------LSMVDDNSNTER 495
+++ E S E L ++ +DD + T+R
Sbjct: 219 RTAVDCAEQNSKIMELLQVVPSCVASLDDVAETDR 253
>pdb|2DNL|A Chain A, Solution Structure Of Rna Binding Domain In Cytoplasmic
Polyadenylation Element Binding Protein 3
Length = 114
Score = 38.9 bits (89), Expect = 0.017, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVS----RGFGFVTFKHEKS 604
K+FVGGLP +D D + F + FGP+ V ++ + +S S +G+ F+ F+ E S
Sbjct: 10 KVFVGGLPPDIDEDEITASFRR-FGPL----VVDWPHKAESKSYFPPKGYAFLLFQEESS 64
Query: 605 AAAAVQA 611
A + A
Sbjct: 65 VQALIDA 71
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V +LL+HGA V ++ L + +H AA G+ + + LI + I+ K + TPL+ A
Sbjct: 85 VNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLAC 142
Query: 408 KNDHMVCAEVLLRWGAN 424
+N C + LL GA+
Sbjct: 143 ENQQRACVKKLLESGAD 159
>pdb|2KU7|A Chain A, Solution Structure Of Mll1 Phd3-Cyp33 Rrm Chimeric Protein
Length = 140
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 547 KSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVA-EFQTEKQSVSRGFGFVTFKHEKSA 605
K ++VGGL +D L F FG I D ++ +++TEK RGF FV F+ + A
Sbjct: 63 KRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKH---RGFAFVEFELAEDA 118
Query: 606 AAAV 609
AAA+
Sbjct: 119 AAAI 122
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 348 VGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407
V +LL+HGA V ++ L + +H AA G+ + + LI + I+ K + TPL+ A
Sbjct: 141 VNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLAC 198
Query: 408 KNDHMVCAEVLLRWGAN 424
+N C + LL GA+
Sbjct: 199 ENQQRACVKKLLESGAD 215
>pdb|2RS2|A Chain A, 1h, 13c, And 15n Chemical Shift Assignments For Musashi1
Rbd1:r(Guagu) Complex
Length = 109
Score = 38.1 bits (87), Expect = 0.025, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAA 608
K+F+GGL + + L YF + FG +++ V K+S RGFGFVTF +
Sbjct: 27 KMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMRDPLTKRS--RGFGFVTFMDQAGVDKV 83
Query: 609 VQARFVTIMGKEVEIKSAVPK 629
+ + K ++ K A P+
Sbjct: 84 LAQSRHELDSKTIDPKVAFPR 104
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 291 PLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRIVGI 350
PL +A AG +++++ LL G + LH A + ++ I +
Sbjct: 77 PLHIAASAGRDEIVKALLGK---GAQVNAVNQNGCTPLHYAASKN--------RHEIAVM 125
Query: 351 LLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKND 410
LL+ GA ++ TA+H AA GN + + L+ + N++ TPL A +
Sbjct: 126 LLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLACDEE 184
Query: 411 HMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLLK 449
+ A++L+ GA+ + N + P+ AK + +LK
Sbjct: 185 RVEEAKLLVSQGASIYIENKEEKTPLQVAKG-GLGLILK 222
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPL 403
IV LL+ G V+ ++ G + LHIAA +G + ++ L+ K +N TPL
Sbjct: 53 HTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ-VNAVNQNGCTPL 111
Query: 404 FFAVKNDHMVCAEVLLRWGAN 424
+A + A +LL GAN
Sbjct: 112 HYAASKNRHEIAVMLLEGGAN 132
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 37.7 bits (86), Expect = 0.031, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 341 HILQNR---IVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTI 397
H ++N +V +LL+HGA V+ Q G +ALH A+G G + L+R D +LK
Sbjct: 156 HAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS-SLKNC 214
Query: 398 MMETPLFFA 406
+TPL A
Sbjct: 215 HNDTPLMVA 223
Score = 37.0 bits (84), Expect = 0.057, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 361 QNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLR 420
+N GLTALH+A + + ++ L+ + D + +PL AV+N+ + ++LL+
Sbjct: 112 RNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ 171
Query: 421 WGAN 424
GAN
Sbjct: 172 HGAN 175
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 63 VSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTD 122
++C S +C +L++ P L E G+TALH+A + V+LLL++ A D
Sbjct: 85 LACEHRSPTCLRALLD-SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID 143
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 348 VGILLKHGA---IVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLF 404
V LL+ GA I++++ + +AL +A+ G + + L+ ++ D IN+ TPL
Sbjct: 52 VRFLLEWGADPHILAKERE---SALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLL 107
Query: 405 FAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMR 445
+AV+ +H+ C E LL GA+ P+D A + R
Sbjct: 108 YAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 368 ALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEV 427
++H A G L++ +RK + +N TPL +A + LL WGA+ +
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 428 LNLRRERPIDFAKS 441
L RE + A +
Sbjct: 65 LAKERESALSLAST 78
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 291 PLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRIVGI 350
PL +A AG +++++ LL G + LH A + ++ I +
Sbjct: 76 PLHIAASAGRDEIVKALLGK---GAQVNAVNQNGCTPLHYAASKN--------RHEIAVM 124
Query: 351 LLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKND 410
LL+ GA ++ TA+H AA GN + + L+ + N++ TPL A +
Sbjct: 125 LLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLACDEE 183
Query: 411 HMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLLK 449
+ A++L+ GA+ + N + P+ AK + +LK
Sbjct: 184 RVEEAKLLVSQGASIYIENKEEKTPLQVAKG-GLGLILK 221
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPL 403
IV LL+ G V+ ++ G + LHIAA +G + ++ L+ K +N TPL
Sbjct: 52 HTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ-VNAVNQNGCTPL 110
Query: 404 FFAVKNDHMVCAEVLLRWGAN 424
+A + A +LL GAN
Sbjct: 111 HYAASKNRHEIAVMLLEGGAN 131
>pdb|2CQB|A Chain A, Solution Structure Of The Rna Recognition Motif In
Peptidyl- Prolyl Cis-Trans Isomerase E
Length = 102
Score = 37.7 bits (86), Expect = 0.035, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 547 KSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVA-EFQTEKQSVSRGFGFVTFKHEKSA 605
K ++VGGL +D L F FG I D ++ +++TEK RGF FV F+ + A
Sbjct: 12 KRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKH---RGFAFVEFELAEDA 67
Query: 606 AAAV-QARFVTIMGKEVEIKSAVPKEV 631
AAA+ + G+ + + A P +
Sbjct: 68 AAAIDNMNESELFGRTIRVNLAKPMRI 94
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 18/143 (12%)
Query: 291 PLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRI--V 348
PL A +AG D+ +L+++ G + C+ L + N + V
Sbjct: 14 PLHAAAEAGHVDICHMLVQA-------------GANIDTCSEDQRTPLMEAAENNHLEAV 60
Query: 349 GILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVK 408
L+K GA+V ++ G T LH+AA G+ + ++ L+ +N + TP+ +A +
Sbjct: 61 KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE 120
Query: 409 NDHMVCAEVLLRWGANSEVLNLR 431
H+ ++LL G++ +N+R
Sbjct: 121 YKHVDLVKLLLSKGSD---INIR 140
>pdb|2FY1|A Chain A, A Dual Mode Of Rna Recognition By The Rbmy Protein
Length = 116
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 548 SKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAA- 606
K+F+GGL + L F KH GPI + + + +T K SRGF F+TF++ A
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKH-GPISEVLLIKDRTSK---SRGFAFITFENPADAKN 63
Query: 607 AAVQARFVTIMGKEVEIKSA 626
AA ++ GK ++++ A
Sbjct: 64 AAKDMNGKSLHGKAIKVEQA 83
>pdb|3S7R|A Chain A, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
pdb|3S7R|B Chain B, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
Length = 87
Score = 37.4 bits (85), Expect = 0.039, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 539 IHAS-TQEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFV 597
I+AS +E K FVGGL + L YF K FG + D + SRGFGF+
Sbjct: 2 INASKNEEDAGKXFVGGLSWDTSKKDLKDYFTK-FGEVVDCTIKX--DPNTGRSRGFGFI 58
Query: 598 TFKHEKSAAAAVQARFVTIMGKEVEIKSA 626
FK S + + + G+ ++ K A
Sbjct: 59 LFKDAASVEKVLDQKEHRLDGRVIDPKKA 87
>pdb|2JRS|A Chain A, Solution Nmr Structure Of Caper Rrm2 Domain. Northeast
Structural Genomics Target Hr4730a
Length = 108
Score = 37.4 bits (85), Expect = 0.040, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAA 608
+++VG L F + D L G FE FG IE ++ + S+G+GF+TF + A A
Sbjct: 28 RLYVGSLHFNITEDMLRGIFEP-FGRIESIQL--MMDSETGRSKGYGFITFSDSECAKKA 84
Query: 609 VQ 610
++
Sbjct: 85 LE 86
>pdb|2KYX|A Chain A, Solution Structure Of The Rrm Domain Of Cyp33
Length = 83
Score = 37.4 bits (85), Expect = 0.042, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 547 KSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVA-EFQTEKQSVSRGFGFVTFKHEKSA 605
K ++VGGL +D L F FG I D ++ +++TEK RGF FV F+ + A
Sbjct: 5 KRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKH---RGFAFVEFELAEDA 60
Query: 606 AAAV 609
AAA+
Sbjct: 61 AAAI 64
>pdb|3LPY|A Chain A, Crystal Structure Of The Rrm Domain Of Cyp33
pdb|3LPY|B Chain B, Crystal Structure Of The Rrm Domain Of Cyp33
Length = 79
Score = 37.4 bits (85), Expect = 0.042, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 547 KSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVA-EFQTEKQSVSRGFGFVTFKHEKSA 605
K ++VGGL +D L F FG I D ++ +++TEK RGF FV F+ + A
Sbjct: 2 KRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKH---RGFAFVEFELAEDA 57
Query: 606 AAAV 609
AAA+
Sbjct: 58 AAAI 61
>pdb|3MDF|A Chain A, Crystal Structure Of The Rrm Domain Of Cyclophilin 33
pdb|3MDF|B Chain B, Crystal Structure Of The Rrm Domain Of Cyclophilin 33
Length = 85
Score = 37.4 bits (85), Expect = 0.042, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 547 KSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVA-EFQTEKQSVSRGFGFVTFKHEKSA 605
K ++VGGL +D L F FG I D ++ +++TEK RGF FV F+ + A
Sbjct: 7 KRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKH---RGFAFVEFELAEDA 62
Query: 606 AAAV 609
AAA+
Sbjct: 63 AAAI 66
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 37.0 bits (84), Expect = 0.055, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 347 IVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFA 406
I + + ++ +Q ++ G TALH+AA S A + L+ D N++ M TPL A
Sbjct: 39 ISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADA-NIQDNMGRTPLHAA 97
Query: 407 VKNDHMVCAEVLLR 420
V D ++L+R
Sbjct: 98 VSADAQGVFQILIR 111
Score = 33.1 bits (74), Expect = 0.74, Method: Composition-based stats.
Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 11/166 (6%)
Query: 277 AVANGSCTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSM 336
A A+ + D PL A A + V +IL++++ ++ +H T +
Sbjct: 79 ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL---------DARMHDG-TTPL 128
Query: 337 GLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKT 396
L+ + ++ L+ A V+ + LG +ALH AA N A L++ + +++
Sbjct: 129 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQN 187
Query: 397 IMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQ 442
ETPLF A + A+VLL AN ++ + P D A+ +
Sbjct: 188 NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 233
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 12/151 (7%)
Query: 291 PLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRIVGI 350
PL +A AG +++++ LL G + LH A + ++ I +
Sbjct: 76 PLHIAASAGXDEIVKALL---VKGAHVNAVNQNGCTPLHYAASKN--------RHEIAVM 124
Query: 351 LLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKND 410
LL+ GA ++ TA+H AA GN + + L+ + N++ TPL A +
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEE 183
Query: 411 HMVCAEVLLRWGANSEVLNLRRERPIDFAKS 441
+ A+ L+ GA+ + N + P+ AK
Sbjct: 184 RVEEAKFLVTQGASIYIENKEEKTPLQVAKG 214
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPL 403
IV LL+ G V+ ++ G + LHIAA +G + ++ L+ K +N TPL
Sbjct: 52 HTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPL 110
Query: 404 FFAVKNDHMVCAEVLLRWGAN 424
+A + A +LL GAN
Sbjct: 111 HYAASKNRHEIAVMLLEGGAN 131
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 348 VGILLKHGA---IVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLF 404
V LL+ GA I++++ + +AL +A+ G + + L+ ++ D IN+ TPL
Sbjct: 52 VRFLLEWGADPHILAKERE---SALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLL 107
Query: 405 FAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMR 445
+AV +H+ C E LL GA+ P+D A + R
Sbjct: 108 YAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 368 ALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEV 427
++H A G L++ +RK + +N TPL +A + LL WGA+ +
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 428 LNLRRERPIDFAKS 441
L RE + A +
Sbjct: 65 LAKERESALSLAST 78
>pdb|1U6F|A Chain A, Nmr Solution Structure Of Tcubp1, A Single Rbd-Unit From
Trypanosoma Cruzi
Length = 139
Score = 36.6 bits (83), Expect = 0.071, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 550 IFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAV 609
+ V +P +D L FE+ +GPIE ++ + +QS RG+GFV F+ SA A+
Sbjct: 45 LMVNYIPTTVDEVQLRQLFER-YGPIESVKIVCDRETRQS--RGYGFVKFQSGSSAQQAI 101
>pdb|2DNZ|A Chain A, Solution Structure Of The Second Rna Binding Domain Of Rna
Binding Motif Protein 23
Length = 95
Score = 36.6 bits (83), Expect = 0.071, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 548 SKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAA 607
S ++VG L F + D L G FE FG I++ + + S+G+GF+TF + A
Sbjct: 6 SGLYVGSLHFNITEDMLRGIFEP-FGKIDN--IVLMKDSDTGRSKGYGFITFSDSECARR 62
Query: 608 AVQ 610
A++
Sbjct: 63 ALE 65
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 36.6 bits (83), Expect = 0.075, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 362 NKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRW 421
+K G T LH AA +G+++ ++ L+ K D +N ++ TPL A KN H ++LL
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 422 GANSEVLNLRRERPIDFAKSQDMRFLLK 449
GA+ + P AK ++K
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVK 92
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 95 GMTALHLAAESHTARCVELLLKKRARTDIRSKDG 128
G T LHLAA++ A V+LLL K A + RSKDG
Sbjct: 42 GNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDG 75
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 12/151 (7%)
Query: 291 PLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSMGLSQHILQNRIVGI 350
PL +A AG +++++ LL G + LH A + ++ I +
Sbjct: 76 PLHIAASAGRDEIVKALL---VKGAHVNAVNQNGCTPLHYAASKN--------RHEIAVM 124
Query: 351 LLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKND 410
LL+ GA ++ TA+H AA GN + + L+ + N++ TPL A +
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEE 183
Query: 411 HMVCAEVLLRWGANSEVLNLRRERPIDFAKS 441
+ A+ L+ GA+ + N + P+ AK
Sbjct: 184 RVEEAKFLVTQGASIYIENKEEKTPLQVAKG 214
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPL 403
IV LL+ G V+ ++ G + LHIAA +G + ++ L+ K +N TPL
Sbjct: 52 HTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAH-VNAVNQNGCTPL 110
Query: 404 FFAVKNDHMVCAEVLLRWGAN 424
+A + A +LL GAN
Sbjct: 111 HYAASKNRHEIAVMLLEGGAN 131
>pdb|1WTB|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain Of
Hnrnp D (Auf1) With Telomere Dna
pdb|1X0F|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain Of
Hnrnp D(Auf1) With Telomeric Dna
Length = 79
Score = 36.6 bits (83), Expect = 0.083, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAA 608
KIFVGGL + + YF FG +E + K + RGF F+TFK E+
Sbjct: 3 KIFVGGLSPDTPEEKIREYF-GGFGEVESIELP--MDNKTNKRRGFCFITFKEEEPVKKI 59
Query: 609 VQARFVTIMGKEVEIKSAV 627
++ ++ + + EIK A+
Sbjct: 60 MEKKYHNVGLSKCEIKVAM 78
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPL 403
Q+ V IL+ +GA V+ ++K G T LH+AA G+ + +E L++ D +N + +T
Sbjct: 14 QDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTAF 72
Query: 404 FFAVKNDHMVCAEVL 418
++ N + AE+L
Sbjct: 73 DISIDNGNEDLAEIL 87
>pdb|1HD0|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
pdb|1HD1|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
Length = 75
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 550 IFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAV 609
+F+GGL + L YF K FG + D + +S RGFGFV FK +S +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSK-FGEVVDCTLKLDPITGRS--RGFGFVLFKESESVDKVM 58
Query: 610 QARFVTIMGKEVEIKSA 626
+ + GK ++ K A
Sbjct: 59 DQKEHKLNGKVIDPKRA 75
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 326 SALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLI 385
+ALH A+++ S HI V L+++ + +Q G TALH + N++ L+ L+
Sbjct: 171 TALHLAVRSVDRTSLHI-----VDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225
Query: 386 RKEPDCINLKTIMMETPLFFAVKNDHMVCAEVL 418
R + I + ETPL A + H C E+L
Sbjct: 226 RGKAS-IEIANESGETPLDIAKRLKHEHCEELL 257
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 367 TALHIAAGSGNSQALE--DLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGAN 424
TALH+A S + +L D + + ++ +T T L + D+ C ++LLR A+
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 425 SEVLNLRRERPIDFAK 440
E+ N E P+D AK
Sbjct: 231 IEIANESGETPLDIAK 246
>pdb|1UAW|A Chain A, Solution Structure Of The N-Terminal Rna-Binding Domain Of
Mouse Musashi1
Length = 77
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTF 599
K+F+GGL + + L YF + FG +++ V K+S RGFGFVTF
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMRDPLTKRS--RGFGFVTF 49
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 35.8 bits (81), Expect = 0.14, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 355 GAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVC 414
G V++ + G LH AA G + LE L+ K D IN TPL AV H+ C
Sbjct: 30 GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGHVSC 88
Query: 415 AEVLLRWGANSEV 427
++LL GA+ V
Sbjct: 89 VKLLLSKGADKTV 101
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 347 IVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFA 406
I + + ++ +Q ++ G TALH+AA S A + L+ D N++ M TPL A
Sbjct: 40 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAA 98
Query: 407 VKNDHMVCAEVLLR 420
V D ++L+R
Sbjct: 99 VSADAQGVFQILIR 112
Score = 33.1 bits (74), Expect = 0.72, Method: Composition-based stats.
Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 11/166 (6%)
Query: 277 AVANGSCTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSM 336
A A+ + D PL A A + V +IL++++ ++ +H T +
Sbjct: 80 ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL---------DARMHDG-TTPL 129
Query: 337 GLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKT 396
L+ + ++ L+ A V+ + LG +ALH AA N A L++ + +++
Sbjct: 130 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQN 188
Query: 397 IMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQ 442
ETPLF A + A+VLL AN ++ + P D A+ +
Sbjct: 189 NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 234
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 347 IVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFA 406
I + + ++ +Q ++ G TALH+AA S A + L+ D N++ M TPL A
Sbjct: 7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAA 65
Query: 407 VKNDHMVCAEVLLR 420
V D ++L+R
Sbjct: 66 VSADAQGVFQILIR 79
Score = 33.1 bits (74), Expect = 0.77, Method: Composition-based stats.
Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 11/166 (6%)
Query: 277 AVANGSCTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSM 336
A A+ + D PL A A + V +IL++++ ++ +H T +
Sbjct: 47 ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL---------DARMHDG-TTPL 96
Query: 337 GLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKT 396
L+ + ++ L+ A V+ + LG +ALH AA N A L++ + +++
Sbjct: 97 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQN 155
Query: 397 IMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQ 442
ETPLF A + A+VLL AN ++ + P D A+ +
Sbjct: 156 NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 201
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 347 IVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFA 406
I + + ++ +Q ++ G TALH+AA S A + L+ D N++ M TPL A
Sbjct: 39 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAA 97
Query: 407 VKNDHMVCAEVLLR 420
V D ++L+R
Sbjct: 98 VSADAQGVFQILIR 111
Score = 33.1 bits (74), Expect = 0.74, Method: Composition-based stats.
Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 11/166 (6%)
Query: 277 AVANGSCTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSM 336
A A+ + D PL A A + V +IL++++ ++ +H T +
Sbjct: 79 ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL---------DARMHDG-TTPL 128
Query: 337 GLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKT 396
L+ + ++ L+ A V+ + LG +ALH AA N A L++ + +++
Sbjct: 129 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQN 187
Query: 397 IMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQ 442
ETPLF A + A+VLL AN ++ + P D A+ +
Sbjct: 188 NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 233
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 355 GAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVC 414
G V++ + G LH AA G + LE L+ K D IN TPL AV H+ C
Sbjct: 25 GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGHVSC 83
Query: 415 AEVLLRWGANSEV 427
++LL GA+ V
Sbjct: 84 VKLLLSKGADKTV 96
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 71/157 (45%), Gaps = 12/157 (7%)
Query: 291 PLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCAL-KTSMGLSQHILQNRIVG 349
P +A G+ +V++ L + G + LH A+ K +SQ +++N
Sbjct: 75 PFHIACSVGNLEVVKSLY-DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN---- 129
Query: 350 ILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKN 409
GA V ++K LH AA G+ + +E L +N + TPLF A+
Sbjct: 130 -----GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184
Query: 410 DHMVCAEVLL-RWGANSEVLNLRRERPIDFAKSQDMR 445
H A +L+ ++GA ++++ + + D A ++ ++
Sbjct: 185 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVK 221
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 11/124 (8%)
Query: 324 GNSALHCAL-KTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALE 382
G + LH A+ K +SQ +++N GA V ++K LH AA G+ + +E
Sbjct: 107 GVTCLHLAVGKKWFEVSQFLIEN---------GASVRIKDKFNQIPLHRAASVGSLKLIE 157
Query: 383 DLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLL-RWGANSEVLNLRRERPIDFAKS 441
L +N + TPLF A+ H A +L+ ++GA ++++ + + D A +
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 217
Query: 442 QDMR 445
+ ++
Sbjct: 218 EQVK 221
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 11/124 (8%)
Query: 324 GNSALHCAL-KTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALE 382
G + LH A+ K +SQ +++N GA V ++K LH AA G+ + +E
Sbjct: 107 GVTCLHLAVGKKWFEVSQFLIEN---------GASVRIKDKFNQIPLHRAASVGSLKLIE 157
Query: 383 DLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLL-RWGANSEVLNLRRERPIDFAKS 441
L +N + TPLF A+ H A +L+ ++GA ++++ + + D A +
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 217
Query: 442 QDMR 445
+ ++
Sbjct: 218 EQVK 221
>pdb|1IQT|A Chain A, Solution Structure Of The C-Terminal Rna-Binding Domain Of
Heterogeneous Nuclear Ribonucleoprotein D0 (Auf1)
Length = 75
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 550 IFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAV 609
IFVGGL + + YF FG +E + K + RGF F+TFK E+ +
Sbjct: 2 IFVGGLSPDTPEEKIREYF-GGFGEVESIELP--MDNKTNKRRGFCFITFKEEEPVKKIM 58
Query: 610 QARFVTIMGKEVEIKSA 626
+ ++ + + EIK A
Sbjct: 59 EKKYHNVGLSKCEIKVA 75
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 95 GMTALHLAAESHTARCVELLLKKRARTDIRS 125
G TALH AA A V+LLL K ARTD+R+
Sbjct: 140 GDTALHAAAWKGYADIVQLLLAKGARTDLRN 170
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%)
Query: 358 VSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEV 417
V+ +K G TAL+ A G+ +E L + +N + + +T L A + ++
Sbjct: 99 VNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQL 158
Query: 418 LLRWGANSEVLNLRRERPIDFAKSQDMRFLLK 449
LL GA +++ N+ ++ D A + LLK
Sbjct: 159 LLAKGARTDLRNIEKKLAFDXATNAACASLLK 190
>pdb|2KI2|A Chain A, Solution Structure Of Ss-Dna Binding Protein 12rnp2
Precursor, Hp0827(O25501_helpy) Form Helicobacter Pylori
Length = 90
Score = 34.3 bits (77), Expect = 0.37, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 550 IFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAV 609
I+VG L + S+ + F + FG + + ++ + K+ +GFGFV + E + A
Sbjct: 4 IYVGNLVYSATSEQVKELFSQ-FGKVFNVKLIYDRETKKP--KGFGFVEMQEESVSEAIA 60
Query: 610 QARFVTIMGKEVEIKSAVPKEVL 632
+ MG+ + + A PK+ L
Sbjct: 61 KLDNTDFMGRTIRVTEANPKKSL 83
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDC---INLKTIMME 400
Q +V LL++GA K +AL +A G + D+++ DC +N
Sbjct: 64 QIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT----DIVKMLLDCGVDVNEYDWNGG 119
Query: 401 TPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMR 445
TPL +AV +H+ C ++LL GA+ + +D A + R
Sbjct: 120 TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 164
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 401 TPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLLKAANTCHTNL 458
TPL +A + + E LL+ GA+ ++L RE + A S+ ++K C ++
Sbjct: 54 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 111
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDC---INLKTIMME 400
Q +V LL++GA K +AL +A G + D+++ DC +N
Sbjct: 46 QIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT----DIVKMLLDCGVDVNEYDWNGG 101
Query: 401 TPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMR 445
TPL +AV +H+ C ++LL GA+ + +D A + R
Sbjct: 102 TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 146
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 401 TPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLLKAANTCHTNL 458
TPL +A + + E LL+ GA+ ++L RE + A S+ ++K C ++
Sbjct: 36 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 93
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDC---INLKTIMME 400
Q +V LL++GA K +AL +A G + D+++ DC +N
Sbjct: 48 QIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT----DIVKMLLDCGVDVNEYDWNGG 103
Query: 401 TPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMR 445
TPL +AV +H+ C ++LL GA+ + +D A + R
Sbjct: 104 TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 401 TPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLLKAANTCHTNL 458
TPL +A + + E LL+ GA+ ++L RE + A S+ ++K C ++
Sbjct: 38 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 95
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 367 TALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSE 426
T L +A G A++ L+ + D + K I T L +AVKN+ + AE LL G+N
Sbjct: 37 TPLMVACMLGMENAIDKLV-ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN 95
Query: 427 VLNLRRERP----IDFAKSQDMRFLLK-AANTCHTNL 458
+ + P I F S+ FLL+ AN NL
Sbjct: 96 TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNL 132
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 33.9 bits (76), Expect = 0.51, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 347 IVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFA 406
I + + ++ +Q ++ G TALH+AA S A + L+ D ++ M TPL A
Sbjct: 4 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-XIQDNMGRTPLHAA 62
Query: 407 VKNDHMVCAEVLLR 420
V D ++LLR
Sbjct: 63 VSADAQGVFQILLR 76
Score = 33.9 bits (76), Expect = 0.51, Method: Composition-based stats.
Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 11/166 (6%)
Query: 277 AVANGSCTDKKVGPPLILATQAGDEDVIEILLKSKXXXXXXXXXXXXGNSALHCALKTSM 336
A A+ D PL A A + V +ILL+++ ++ +H T +
Sbjct: 44 ASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDL---------DARMHDG-TTPL 93
Query: 337 GLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKT 396
L+ + ++ L+ A V+ + LG +ALH AA N A L++ + +++
Sbjct: 94 ILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQN 152
Query: 397 IMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQ 442
ETPLF A + A+VLL AN ++ + P D A+ +
Sbjct: 153 NKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 198
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 33.9 bits (76), Expect = 0.51, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPL 403
Q+ V IL+ +GA V+ ++K G T LH+AA +G+ + ++ L+ D +N + +T
Sbjct: 18 QDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VNAQDKFGKTAF 76
Query: 404 FFAVKNDHMVCAEVL 418
++ N + AE+L
Sbjct: 77 DISIDNGNEDLAEIL 91
>pdb|2ERR|A Chain A, Nmr Structure Of The Rna Binding Domain Of Human Fox-1 In
Complex With Ugcaugu
Length = 109
Score = 33.1 bits (74), Expect = 0.85, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAA 608
++ V +PF L F + FG I D + + S+GFGFVTF++ A A
Sbjct: 31 RLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEI----IFNERGSKGFGFVTFENSADADRA 85
Query: 609 VQARFVTIM-GKEVEIKSAVPK 629
+ T++ G+++E+ +A +
Sbjct: 86 REKLHGTVVEGRKIEVNNATAR 107
>pdb|2CQ3|A Chain A, Solution Structure Of Rna Binding Domain In Rna Binding
Motif Protein 9
Length = 103
Score = 33.1 bits (74), Expect = 0.88, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAA 608
++ V +PF L F + FG I D + + S+GFGFVTF++ A A
Sbjct: 17 RLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEI----IFNERGSKGFGFVTFENSADADRA 71
Query: 609 VQARFVTIM-GKEVEIKSAVPK 629
+ T++ G+++E+ +A +
Sbjct: 72 REKLHGTVVEGRKIEVNNATAR 93
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 34/121 (28%)
Query: 363 KLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWG 422
K G TALH+AA G ++ L+ LI+ D +N+K TPL A WG
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAA------------HWG 243
Query: 423 ANSEVLNLRRERPIDFAKSQDMRFLLKAANTCHTNLAFLNQEKQNASLESDEDISGTCEA 482
K + R L++ N C ++ +N+ Q A +DEDI G E
Sbjct: 244 -----------------KEEACRILVE--NLC--DMEAVNKVGQTAFDVADEDILGYLEE 282
Query: 483 L 483
L
Sbjct: 283 L 283
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 351 LLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKND 410
LL+ GA ++ N GLTALH A N ++ L+ + IN PL A
Sbjct: 59 LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCG 117
Query: 411 HMVCAEVLLRWGANSEVLNLRRERPIDFAK 440
++ AE L+ GA+ +N + P+D A+
Sbjct: 118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAE 147
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 87 VNEVEES-SGMTALHLAAESHTARCVELLLKKRARTDIRSKDG 128
+N+V + SG TALH+AA ++LL++ R +I+ DG
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDG 232
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 32.7 bits (73), Expect = 0.99, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 24/44 (54%)
Query: 85 ALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDG 128
A +N+ E + G T LHLA E+ A +ELLLK A R G
Sbjct: 182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGG 225
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 32.7 bits (73), Expect = 0.99, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 24/44 (54%)
Query: 85 ALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDG 128
A +N+ E + G T LHLA E+ A +ELLLK A R G
Sbjct: 182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGG 225
>pdb|2LXI|A Chain A, Nmr Structure Of The N-Terminal Rna Binding Domain 1
(Rrm1) Of The Protein Rbm10 From Homo Sapiens
Length = 91
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 555 LPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA--R 612
LP D + G + H + R+ ++ QS RGF FV F H + A ++A
Sbjct: 9 LPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQS--RGFAFVEFSHLQDATRWMEANQH 66
Query: 613 FVTIMGKEVEIKSAVPK 629
+ I+G++V + + PK
Sbjct: 67 SLNILGQKVSMHYSDPK 83
>pdb|2DHG|A Chain A, Solution Structure Of The C-Terminal Rna Recognition Motif
In Trna Selenocysteine Associated Protein
Length = 104
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 550 IFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHE---KSAA 606
+FVG L +D L +F K + +V QT VS+G+GFV F E K A
Sbjct: 12 LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQT---GVSKGYGFVKFTDELEQKRAL 68
Query: 607 AAVQARFVTIMGKEVEIKSAVPK 629
Q V + K V + A+PK
Sbjct: 69 TECQGA-VGLGSKPVRLSVAIPK 90
>pdb|2DGO|A Chain A, Solution Structure Of The Rna Binding Domain In Cytotoxic
Granule-Associated Rna Binding Protein 1
pdb|2RNE|A Chain A, Solution Structure Of The Second Rna Recognition Motif
(Rrm) Of Tia-1
Length = 115
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 550 IFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAV 609
+FVG L + ++ + F FG I DARV + +S +G+GFV+F ++ A A+
Sbjct: 18 VFVGDLSPEITTEDIKAAFAP-FGRISDARVVKDMATGKS--KGYGFVSFFNKWDAENAI 74
Query: 610 Q 610
Q
Sbjct: 75 Q 75
>pdb|2KHC|A Chain A, Bruno Rrm3+
Length = 118
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 550 IFVGGLPF-FLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAA 608
+F+ LP F D+D + FG + A+V F ++ S+S+ FGFV+F + SA A
Sbjct: 43 LFIYHLPQEFTDTDLASTFLP--FGNVISAKV--FIDKQTSLSKCFGFVSFDNPDSAQVA 98
Query: 609 VQA 611
++A
Sbjct: 99 IKA 101
>pdb|2LEA|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm
pdb|2LEB|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm In Complex
With 5'- Uccagu-3'
pdb|2LEC|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm In Complex
With 5'- Uggagu-3'
Length = 135
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 545 EFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKS 604
E + + V L + D+L FEK +G + D + + K+S RGF FV F ++
Sbjct: 45 EGMTSLKVDNLTYRTSPDTLRRVFEK-YGRVGDVYIPRDRYTKES--RGFAFVRFHDKRD 101
Query: 605 AAAAVQARFVTIM-GKEVEIKSA 626
A A+ A ++ G+E+ ++ A
Sbjct: 102 AEDAMDAMDGAVLDGRELRVQMA 124
>pdb|2DO4|A Chain A, Solution Structure Of The Rna Binding Domain Of Squamous
Cell Carcinoma Antigen Recognized By T Cells 3
Length = 100
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 542 STQEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKH 601
ST K K+F+ GLPF + L + H G ++D R+ T + +G +V +++
Sbjct: 12 STSLEKHKLFISGLPFSCTKEELEEICKAH-GTVKDLRLV---TNRAGKPKGLAYVEYEN 67
Query: 602 EKSAAAAV 609
E A+ AV
Sbjct: 68 ESQASQAV 75
>pdb|2DH7|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Nucleolysin Tiar
Length = 105
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 550 IFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAV 609
+FVG L + ++ + F FG I DARV + +S +G+GFV+F ++ A A+
Sbjct: 18 VFVGDLSPEITTEDIKSAFAP-FGKISDARVVKDMATGKS--KGYGFVSFYNKLDAENAI 74
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPL 403
Q+ V IL+ +GA V+ ++K G T LH+AA +G+ + ++ L+ D + + +T
Sbjct: 36 QDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAF 94
Query: 404 FFAVKNDHMVCAEVL 418
++ N + AE+L
Sbjct: 95 DISIDNGNEDLAEIL 109
>pdb|2KN4|A Chain A, The Structure Of The Rrm Domain Of Sc35
Length = 158
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 545 EFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKS 604
E + + V L + D+L FEK +G + D + + K+S RGF FV F ++
Sbjct: 68 EGMTSLKVDNLTYRTSPDTLRRVFEK-YGRVGDVYIPRDRYTKES--RGFAFVRFHDKRD 124
Query: 605 AAAAVQARFVTIM-GKEVEIKSA 626
A A+ A ++ G+E+ ++ A
Sbjct: 125 AEDAMDAMDGAVLDGRELRVQMA 147
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 39/79 (49%)
Query: 351 LLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKND 410
L++ G V Q +K +T LH AA + ++ I K L + TPL +A +
Sbjct: 28 LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQG 87
Query: 411 HMVCAEVLLRWGANSEVLN 429
H+ L+++GA+ +++
Sbjct: 88 HLSMVVQLMKYGADPSLID 106
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 10/130 (7%)
Query: 351 LLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKND 410
L+K+GA S + G + +H+AA G++ + LI K D + M TPL +A
Sbjct: 95 LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGM-TPLMWAAYRT 153
Query: 411 HMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLLKAANTCHTNL---AFLNQEKQN 467
H V LL N+ + K+ + + + A NT +L A N + QN
Sbjct: 154 HSVDPTRLLL------TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQN 207
Query: 468 ASLESDEDIS 477
ES D++
Sbjct: 208 IKGESALDLA 217
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 42 FIDNSLDNADQQTAIVTKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHL 101
FI + + D + A L + +++ C L+ G ALV V E+ G TAL +
Sbjct: 192 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR----ALVGTVNEA-GETALDI 246
Query: 102 AAESHTARCVELLLKKRART 121
A + H C ELL + +A T
Sbjct: 247 ARKKHHKECEELLEQAQAGT 266
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 42 FIDNSLDNADQQTAIVTKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHL 101
FI + + D + A L + +++ C L+ G ALV V E+ G TAL +
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR----ALVGTVNEA-GETALDI 265
Query: 102 AAESHTARCVELLLKKRART 121
A + H C ELL + +A T
Sbjct: 266 ARKKHHKECEELLEQAQAGT 285
>pdb|2CPZ|A Chain A, Solution Structure Of Rna Binding Domain 3 In Cug Triplet
Repeat Rna-Binding Protein 1
pdb|2RQ4|A Chain A, Refinement Of Rna Binding Domain 3 In Cug Triplet Repeat
Rna-Binding Protein 1
pdb|2RQC|A Chain A, Solution Structure Of Rna-Binding Domain 3 Of Cugbp1 In
Complex With Rna (Ug)3
Length = 115
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 548 SKIFVGGLPF-FLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAA 606
+ +F+ LP F D D L + FG + A+V F ++ ++S+ FGFV++ + SA
Sbjct: 26 ANLFIYHLPQEFGDQDLLQMFMP--FGNVVSAKV--FIDKQTNLSKCFGFVSYDNPVSAQ 81
Query: 607 AAVQA 611
AA+Q+
Sbjct: 82 AAIQS 86
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 23/44 (52%)
Query: 85 ALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDG 128
A VN EE G T LH A + VELLL+ A +R K+G
Sbjct: 29 ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG 72
>pdb|3BS9|A Chain A, X-Ray Structure Of Human Tia-1 Rrm2
pdb|3BS9|B Chain B, X-Ray Structure Of Human Tia-1 Rrm2
Length = 87
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 572 FGPIEDARVA-EFQTEKQSVSRGFGFVTFKHEKSAAAAVQ 610
FG I DARV + T K S+G+GFV+F ++ A A+Q
Sbjct: 30 FGRISDARVVKDMATGK---SKGYGFVSFFNKWDAENAIQ 66
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 346 RIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRK 387
+IV ILL G SQ + G TAL+ A SGN Q ++ ++K
Sbjct: 76 KIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKK 117
>pdb|2JVO|A Chain A, Segmental Isotope Labeling Of Npl3
Length = 108
Score = 30.4 bits (67), Expect = 5.9, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 23/105 (21%)
Query: 535 GMCMIHASTQEF-KSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRG 593
G M H E +++FV P + L F FGP+++ ++ G
Sbjct: 18 GSHMHHRQEGELSNTRLFVRPFPLDVQESELNEIFGP-FGPMKEVKILN----------G 66
Query: 594 FGFVTFKHEKSAAAAVQARFVTIMGKEVEIKSAV--PKEVLFAEL 636
F FV F+ +SAA A++ EV KS P EV++++L
Sbjct: 67 FAFVEFEEAESAAKAIE---------EVHGKSFANQPLEVVYSKL 102
>pdb|3NNH|A Chain A, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu Rna
pdb|3NNH|C Chain C, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu Rna
pdb|3NNH|B Chain B, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu Rna
pdb|3NNH|D Chain D, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu Rna
Length = 88
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAA 608
K+FVG +P L FE+ +G + + V +++ S+G FVTF K+A A
Sbjct: 5 KMFVGQVPRTWSEKDLRELFEQ-YGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 63
Query: 609 VQA 611
A
Sbjct: 64 QNA 66
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 30.0 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 14/176 (7%)
Query: 325 NSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDL 384
N+ + +TS+ L+ + LL GA + Q+ G T LH A + + L
Sbjct: 44 NATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQIL 103
Query: 385 IRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDM 444
+R +N + TPL A + E L+ A+ + + + +A + +
Sbjct: 104 LRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVN- 162
Query: 445 RFLLKAANTCHTNLAFLNQEKQNASLESDEDI------SGTCEALLSMVDDNSNTE 494
NT N+ ++ ++A + DE G+ EA +++D+ +N E
Sbjct: 163 -------NTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANRE 211
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 30.0 bits (66), Expect = 7.4, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 351 LLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKND 410
L+ A V+ + LG +ALH AA N A L++ + +++ ETPLF A +
Sbjct: 34 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNKEETPLFLAAREG 92
Query: 411 HMVCAEVLLRWGANSEVLNLRRERPIDFAKSQ 442
A+VLL AN ++ + P D A+ +
Sbjct: 93 SYETAKVLLDHFANRDITDHMDRLPRDIAQER 124
>pdb|2DHS|A Chain A, Solution Structure Of Nucleic Acid Binding Protein
Cugbp1ab And Its Binding Study With Dna And Rna
Length = 187
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAA 608
K+FVG +P L FE+ +G + + V +++ S+G FVTF K+A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQ-YGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 609 VQA 611
A
Sbjct: 76 QNA 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,381,980
Number of Sequences: 62578
Number of extensions: 962795
Number of successful extensions: 2809
Number of sequences better than 100.0: 150
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 2173
Number of HSP's gapped (non-prelim): 481
length of query: 1044
length of database: 14,973,337
effective HSP length: 109
effective length of query: 935
effective length of database: 8,152,335
effective search space: 7622433225
effective search space used: 7622433225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)