Query 001613
Match_columns 1044
No_of_seqs 638 out of 5277
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 05:07:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02876 ankyrin repeat protei 100.0 6.3E-46 1.4E-50 462.2 29.5 364 21-443 5-453 (682)
2 PHA02876 ankyrin repeat protei 100.0 3.5E-43 7.6E-48 437.6 33.0 328 59-443 147-487 (682)
3 PHA02946 ankyin-like protein; 100.0 7.9E-41 1.7E-45 394.3 35.6 346 18-458 9-381 (446)
4 PHA02874 ankyrin repeat protei 100.0 1.2E-39 2.5E-44 385.2 33.6 302 59-449 3-306 (434)
5 PHA02730 ankyrin-like protein; 100.0 3E-40 6.6E-45 393.8 28.7 363 53-457 37-523 (672)
6 PHA02946 ankyin-like protein; 100.0 2.8E-39 6.2E-44 381.1 29.7 347 59-544 11-364 (446)
7 PHA02716 CPXV016; CPX019; EVM0 100.0 3.9E-39 8.4E-44 391.2 28.5 183 244-445 289-548 (764)
8 KOG0510 Ankyrin repeat protein 100.0 1.3E-39 2.9E-44 377.5 22.4 311 53-541 84-416 (929)
9 PHA03095 ankyrin-like protein; 100.0 2.1E-38 4.7E-43 378.0 32.4 288 62-457 19-315 (471)
10 PHA02730 ankyrin-like protein; 100.0 1.7E-38 3.6E-43 379.0 26.7 390 70-530 20-526 (672)
11 PHA02716 CPXV016; CPX019; EVM0 100.0 5.9E-38 1.3E-42 380.9 29.4 353 66-545 151-545 (764)
12 KOG4177 Ankyrin [Cell wall/mem 100.0 2.7E-39 5.7E-44 397.8 16.8 502 18-583 54-627 (1143)
13 PHA02878 ankyrin repeat protei 100.0 2.1E-37 4.5E-42 370.3 30.1 306 21-443 3-311 (477)
14 PHA02917 ankyrin-like protein; 100.0 6.7E-38 1.5E-42 383.0 25.9 413 54-543 29-493 (661)
15 PHA02874 ankyrin repeat protei 100.0 1.3E-36 2.8E-41 359.2 35.2 328 21-443 4-334 (434)
16 PHA03095 ankyrin-like protein; 100.0 3.6E-37 7.7E-42 367.5 29.0 303 18-431 14-322 (471)
17 PHA02917 ankyrin-like protein; 100.0 4.4E-37 9.5E-42 375.9 29.8 402 15-531 29-515 (661)
18 KOG4177 Ankyrin [Cell wall/mem 100.0 2.2E-38 4.8E-43 389.7 15.8 425 53-542 205-651 (1143)
19 PHA03100 ankyrin repeat protei 100.0 8.1E-37 1.7E-41 365.4 27.1 265 54-429 32-313 (480)
20 PHA03100 ankyrin repeat protei 100.0 1.4E-36 3.1E-41 363.2 28.5 284 68-457 13-308 (480)
21 PHA02989 ankyrin repeat protei 100.0 1.3E-35 2.7E-40 356.3 30.6 284 67-454 13-311 (494)
22 PHA02875 ankyrin repeat protei 100.0 1.6E-34 3.5E-39 339.2 28.0 242 58-442 3-248 (413)
23 KOG0510 Ankyrin repeat protein 100.0 3.4E-35 7.4E-40 340.9 19.7 358 58-569 32-415 (929)
24 PHA02878 ankyrin repeat protei 100.0 1.8E-34 3.9E-39 345.0 24.9 242 88-440 31-277 (477)
25 PHA02791 ankyrin-like protein; 100.0 5.3E-34 1.1E-38 315.5 26.1 235 67-425 9-246 (284)
26 PHA02989 ankyrin repeat protei 100.0 1.3E-33 2.9E-38 338.8 29.4 288 29-425 14-315 (494)
27 PHA02798 ankyrin-like protein; 100.0 1.6E-32 3.4E-37 329.2 28.3 266 57-430 36-322 (489)
28 PHA02875 ankyrin repeat protei 100.0 7.8E-33 1.7E-37 324.9 23.9 221 95-453 2-223 (413)
29 PHA02798 ankyrin-like protein; 100.0 2.6E-32 5.5E-37 327.3 28.5 287 69-457 17-316 (489)
30 PHA02791 ankyrin-like protein; 100.0 2.2E-32 4.7E-37 302.6 23.8 219 53-390 26-245 (284)
31 KOG4412 26S proteasome regulat 100.0 3.8E-32 8.2E-37 266.6 15.4 146 284-441 68-213 (226)
32 KOG4412 26S proteasome regulat 100.0 1.9E-32 4.2E-37 268.7 11.1 192 269-543 19-212 (226)
33 KOG0508 Ankyrin repeat protein 100.0 1.2E-30 2.6E-35 287.1 17.7 221 63-386 10-236 (615)
34 KOG0508 Ankyrin repeat protein 100.0 2.2E-30 4.9E-35 284.9 19.9 215 21-309 7-236 (615)
35 PHA02792 ankyrin-like protein; 100.0 4.5E-29 9.8E-34 295.4 27.7 333 56-441 70-452 (631)
36 PHA02792 ankyrin-like protein; 100.0 1.1E-28 2.3E-33 292.2 28.4 346 13-426 66-480 (631)
37 KOG0509 Ankyrin repeat and DHH 100.0 1.5E-29 3.2E-34 290.7 17.3 212 55-409 42-255 (600)
38 KOG0509 Ankyrin repeat and DHH 100.0 2.8E-28 6.1E-33 280.2 14.9 176 240-443 45-223 (600)
39 PHA02859 ankyrin repeat protei 99.9 1.1E-26 2.5E-31 247.4 19.8 180 236-443 18-203 (209)
40 PHA02795 ankyrin-like protein; 99.9 9.5E-27 2.1E-31 267.1 19.8 215 67-429 58-292 (437)
41 PHA02795 ankyrin-like protein; 99.9 7.4E-26 1.6E-30 259.8 19.7 219 63-426 83-317 (437)
42 PHA02859 ankyrin repeat protei 99.9 3.7E-25 8E-30 235.8 20.3 71 58-138 22-95 (209)
43 KOG4369 RTK signaling protein 99.9 5.8E-27 1.2E-31 275.0 6.0 310 56-450 756-1078(2131)
44 KOG4369 RTK signaling protein 99.9 3.7E-25 8.1E-30 260.0 12.3 310 94-543 756-1068(2131)
45 TIGR00870 trp transient-recept 99.9 6.2E-24 1.3E-28 267.4 19.8 256 54-441 14-299 (743)
46 KOG0502 Integral membrane anky 99.9 8.3E-24 1.8E-28 213.5 8.3 140 285-437 157-296 (296)
47 KOG0507 CASK-interacting adapt 99.9 9.8E-23 2.1E-27 236.3 15.3 243 60-443 6-265 (854)
48 PLN03192 Voltage-dependent pot 99.9 2.9E-22 6.4E-27 254.0 19.8 173 239-441 525-698 (823)
49 KOG0502 Integral membrane anky 99.9 1.9E-22 4E-27 203.7 11.2 177 239-445 96-272 (296)
50 TIGR00870 trp transient-recept 99.9 4E-22 8.7E-27 251.0 15.3 246 239-541 17-296 (743)
51 PLN03192 Voltage-dependent pot 99.9 2.7E-21 5.9E-26 245.2 22.0 193 68-408 505-698 (823)
52 KOG0507 CASK-interacting adapt 99.9 1.6E-21 3.5E-26 226.3 15.1 258 20-420 5-278 (854)
53 PHA02743 Viral ankyrin protein 99.8 7.1E-21 1.5E-25 195.5 14.0 148 276-434 10-163 (166)
54 KOG0505 Myosin phosphatase, re 99.8 2.3E-20 5.1E-25 211.0 15.9 94 58-181 41-134 (527)
55 KOG0514 Ankyrin repeat protein 99.8 2.8E-20 6E-25 200.4 10.7 158 285-449 265-424 (452)
56 KOG0514 Ankyrin repeat protein 99.8 3.4E-20 7.4E-25 199.7 10.5 168 87-354 261-429 (452)
57 PHA02741 hypothetical protein; 99.8 1.5E-19 3.2E-24 186.3 14.0 131 284-425 17-158 (169)
58 PHA02736 Viral ankyrin protein 99.8 1.8E-19 4E-24 182.5 10.8 135 284-427 13-154 (154)
59 KOG0505 Myosin phosphatase, re 99.8 1.4E-19 3.1E-24 204.7 10.4 97 346-443 179-275 (527)
60 PHA02741 hypothetical protein; 99.8 1E-18 2.2E-23 180.0 14.0 126 318-452 15-152 (169)
61 KOG0512 Fetal globin-inducing 99.8 1.1E-18 2.4E-23 170.8 12.9 143 290-443 65-209 (228)
62 PHA02743 Viral ankyrin protein 99.8 1.1E-18 2.4E-23 179.2 12.2 138 239-400 20-162 (166)
63 PHA02884 ankyrin repeat protei 99.8 3.9E-18 8.5E-23 189.3 14.5 115 292-418 37-156 (300)
64 PHA02884 ankyrin repeat protei 99.8 6.8E-18 1.5E-22 187.4 15.8 123 318-449 26-154 (300)
65 KOG0195 Integrin-linked kinase 99.7 3.4E-18 7.4E-23 178.7 6.2 142 297-449 9-150 (448)
66 PHA02736 Viral ankyrin protein 99.7 2.7E-17 5.9E-22 166.6 9.9 129 235-390 13-151 (154)
67 KOG0145 RNA-binding protein EL 99.7 3.2E-17 7E-22 168.8 6.9 210 543-774 37-264 (360)
68 KOG0512 Fetal globin-inducing 99.7 2.3E-16 5.1E-21 154.7 10.9 143 241-410 65-209 (228)
69 KOG0195 Integrin-linked kinase 99.7 1.4E-16 2.9E-21 166.8 9.2 140 274-427 22-161 (448)
70 PF12796 Ank_2: Ankyrin repeat 99.7 4.8E-16 1E-20 142.2 10.4 89 328-429 1-89 (89)
71 cd00204 ANK ankyrin repeats; 99.6 4.4E-15 9.6E-20 142.1 14.7 123 285-419 4-126 (126)
72 KOG3676 Ca2+-permeable cation 99.6 1.7E-15 3.7E-20 179.3 12.0 157 284-449 139-325 (782)
73 cd00204 ANK ankyrin repeats; 99.6 8.9E-15 1.9E-19 140.0 14.9 122 320-450 3-124 (126)
74 PF12796 Ank_2: Ankyrin repeat 99.6 3.3E-15 7.1E-20 136.7 10.5 89 292-396 1-89 (89)
75 KOG3676 Ca2+-permeable cation 99.5 2.4E-14 5.1E-19 169.8 13.1 199 94-387 100-330 (782)
76 COG0666 Arp FOG: Ankyrin repea 99.5 1.5E-13 3.3E-18 145.2 14.2 127 284-422 69-203 (235)
77 COG0666 Arp FOG: Ankyrin repea 99.5 5.6E-13 1.2E-17 140.9 17.0 128 318-453 67-201 (235)
78 KOG4214 Myotrophin and similar 99.5 6.7E-14 1.5E-18 124.0 8.0 113 326-448 4-116 (117)
79 KOG0149 Predicted RNA-binding 99.4 7.3E-14 1.6E-18 143.8 3.2 81 544-627 9-89 (247)
80 KOG4214 Myotrophin and similar 99.4 1.1E-12 2.3E-17 116.5 7.7 104 290-406 4-107 (117)
81 PLN03134 glycine-rich RNA-bind 99.4 7E-13 1.5E-17 132.6 6.6 84 544-630 31-115 (144)
82 PTZ00322 6-phosphofructo-2-kin 99.3 4.3E-12 9.3E-17 157.3 11.7 106 326-440 84-196 (664)
83 KOG0125 Ataxin 2-binding prote 99.3 2.8E-12 6.1E-17 137.2 6.4 82 543-629 92-174 (376)
84 PF13857 Ank_5: Ankyrin repeat 99.3 4.3E-12 9.3E-17 106.0 4.6 56 384-439 1-56 (56)
85 KOG0515 p53-interacting protei 99.3 1.3E-11 2.8E-16 138.7 9.7 119 291-420 553-673 (752)
86 PTZ00322 6-phosphofructo-2-kin 99.2 2E-11 4.3E-16 151.4 11.3 106 290-407 84-196 (664)
87 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.2 5.8E-12 1.3E-16 145.1 6.2 161 546-724 2-168 (352)
88 KOG1710 MYND Zn-finger and ank 99.2 7E-11 1.5E-15 124.6 10.5 120 288-419 12-132 (396)
89 PF13857 Ank_5: Ankyrin repeat 99.2 1.5E-11 3.3E-16 102.6 4.0 55 351-406 1-56 (56)
90 PF13637 Ank_4: Ankyrin repeat 99.2 5.3E-11 1.1E-15 98.6 6.7 54 365-419 1-54 (54)
91 TIGR01659 sex-lethal sex-letha 99.2 1.8E-11 3.9E-16 139.4 5.2 145 544-707 104-254 (346)
92 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.2 2E-11 4.3E-16 140.7 5.4 83 545-630 267-350 (352)
93 PF13637 Ank_4: Ankyrin repeat 99.2 5.8E-11 1.3E-15 98.3 6.2 54 324-385 1-54 (54)
94 KOG0117 Heterogeneous nuclear 99.1 8E-11 1.7E-15 130.7 8.2 116 531-670 65-184 (506)
95 KOG1710 MYND Zn-finger and ank 99.1 6.4E-10 1.4E-14 117.5 11.1 123 324-455 12-135 (396)
96 PF00076 RRM_1: RNA recognitio 99.0 1E-10 2.3E-15 101.3 3.5 69 550-622 1-70 (70)
97 KOG0515 p53-interacting protei 99.0 3.7E-10 7.9E-15 127.3 8.4 102 329-439 555-657 (752)
98 KOG0111 Cyclophilin-type pepti 99.0 8.3E-11 1.8E-15 119.3 2.3 83 545-630 8-91 (298)
99 KOG0122 Translation initiation 99.0 4.1E-10 8.9E-15 116.7 5.6 81 546-629 188-269 (270)
100 KOG0113 U1 small nuclear ribon 99.0 2.4E-10 5.3E-15 121.3 3.7 96 543-641 97-193 (335)
101 PLN03120 nucleic acid binding 99.0 4E-10 8.7E-15 120.6 4.9 77 546-628 3-79 (260)
102 TIGR01645 half-pint poly-U bin 99.0 4.7E-10 1E-14 134.5 5.5 82 546-630 203-285 (612)
103 KOG0126 Predicted RNA-binding 99.0 2.2E-10 4.8E-15 113.5 2.2 76 547-625 35-111 (219)
104 TIGR01645 half-pint poly-U bin 99.0 3.8E-10 8.2E-15 135.3 4.3 80 545-627 105-185 (612)
105 KOG0144 RNA-binding protein CU 98.9 5.8E-10 1.2E-14 123.4 4.9 174 544-736 31-214 (510)
106 PLN03213 repressor of silencin 98.9 4.8E-10 1E-14 125.0 4.1 78 545-629 8-88 (759)
107 KOG0148 Apoptosis-promoting RN 98.9 6.1E-10 1.3E-14 116.7 4.4 81 547-630 62-143 (321)
108 TIGR01628 PABP-1234 polyadenyl 98.9 1.2E-09 2.5E-14 134.0 7.4 89 546-638 284-373 (562)
109 PF14259 RRM_6: RNA recognitio 98.9 8.1E-10 1.8E-14 96.3 4.0 69 550-622 1-70 (70)
110 KOG4207 Predicted splicing fac 98.9 4.2E-10 9.1E-15 113.6 2.2 80 545-627 11-91 (256)
111 TIGR01659 sex-lethal sex-letha 98.9 1.3E-09 2.8E-14 124.3 5.4 81 546-629 192-275 (346)
112 TIGR01648 hnRNP-R-Q heterogene 98.9 2.2E-09 4.8E-14 128.7 6.3 99 544-667 55-155 (578)
113 KOG4205 RNA-binding protein mu 98.9 6.2E-10 1.3E-14 123.5 1.4 82 546-630 5-86 (311)
114 TIGR01628 PABP-1234 polyadenyl 98.8 3.1E-09 6.7E-14 130.3 4.8 76 549-627 2-78 (562)
115 KOG0144 RNA-binding protein CU 98.8 2.3E-09 4.9E-14 118.8 2.8 80 547-630 124-207 (510)
116 smart00361 RRM_1 RNA recogniti 98.8 1.2E-08 2.6E-13 89.2 6.2 63 561-624 2-70 (70)
117 KOG4205 RNA-binding protein mu 98.8 3E-09 6.6E-14 118.0 2.8 82 546-630 96-177 (311)
118 TIGR01622 SF-CC1 splicing fact 98.7 6.3E-09 1.4E-13 124.3 5.3 82 544-628 86-167 (457)
119 smart00362 RRM_2 RNA recogniti 98.7 1E-08 2.2E-13 88.1 4.9 71 549-624 1-72 (72)
120 KOG0107 Alternative splicing f 98.7 6.3E-09 1.4E-13 103.1 4.0 76 545-628 8-84 (195)
121 PLN03121 nucleic acid binding 98.7 9.2E-09 2E-13 108.6 4.7 76 546-627 4-79 (243)
122 KOG0148 Apoptosis-promoting RN 98.7 1.2E-08 2.7E-13 107.1 4.9 76 545-629 162-238 (321)
123 TIGR01642 U2AF_lg U2 snRNP aux 98.7 1.2E-08 2.7E-13 123.5 5.5 82 544-628 292-374 (509)
124 KOG0127 Nucleolar protein fibr 98.7 1.1E-08 2.3E-13 116.2 4.5 84 546-633 116-200 (678)
125 TIGR01622 SF-CC1 splicing fact 98.7 1.5E-08 3.3E-13 121.1 5.4 79 547-628 186-265 (457)
126 KOG0121 Nuclear cap-binding pr 98.7 9.2E-09 2E-13 96.7 2.7 80 545-627 34-114 (153)
127 smart00360 RRM RNA recognition 98.7 2E-08 4.4E-13 85.8 4.6 70 552-624 1-71 (71)
128 KOG0145 RNA-binding protein EL 98.7 3E-08 6.6E-13 103.2 6.4 83 544-629 275-358 (360)
129 KOG0131 Splicing factor 3b, su 98.6 6.9E-09 1.5E-13 103.4 1.1 81 544-627 6-87 (203)
130 KOG0108 mRNA cleavage and poly 98.6 2.2E-08 4.7E-13 115.9 5.3 80 548-630 19-99 (435)
131 TIGR01648 hnRNP-R-Q heterogene 98.6 2E-08 4.2E-13 120.6 4.5 74 546-630 232-308 (578)
132 COG0724 RNA-binding proteins ( 98.6 3.3E-08 7E-13 108.0 4.8 79 547-628 115-194 (306)
133 KOG0124 Polypyrimidine tract-b 98.6 2.4E-08 5.3E-13 108.0 3.4 77 546-625 112-189 (544)
134 KOG0783 Uncharacterized conser 98.6 2.7E-08 5.7E-13 117.5 3.7 83 358-441 45-128 (1267)
135 PF13606 Ank_3: Ankyrin repeat 98.6 6.7E-08 1.5E-12 69.8 4.0 30 94-123 1-30 (30)
136 KOG0783 Uncharacterized conser 98.5 6.4E-08 1.4E-12 114.4 5.3 95 304-408 33-128 (1267)
137 KOG0146 RNA-binding protein ET 98.5 2.2E-08 4.7E-13 104.6 1.2 83 545-630 283-366 (371)
138 KOG0127 Nucleolar protein fibr 98.5 6.7E-08 1.5E-12 110.0 4.3 80 548-630 6-86 (678)
139 cd00590 RRM RRM (RNA recogniti 98.5 1.2E-07 2.7E-12 81.7 5.0 73 549-625 1-74 (74)
140 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.5 9.5E-08 2.1E-12 114.8 4.9 75 547-630 2-79 (481)
141 PF00023 Ank: Ankyrin repeat H 98.5 1.9E-07 4E-12 69.1 4.4 33 94-126 1-33 (33)
142 KOG0506 Glutaminase (contains 98.4 1.8E-07 3.9E-12 105.0 4.9 92 322-421 504-595 (622)
143 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.4 1.8E-07 3.8E-12 112.5 5.1 77 545-629 273-351 (481)
144 KOG0117 Heterogeneous nuclear 98.4 1.1E-07 2.3E-12 106.4 2.6 76 544-630 256-332 (506)
145 PF13606 Ank_3: Ankyrin repeat 98.4 2.9E-07 6.2E-12 66.5 3.9 30 398-427 1-30 (30)
146 PF13893 RRM_5: RNA recognitio 98.4 2.9E-07 6.2E-12 76.7 4.6 55 564-626 1-56 (56)
147 KOG0782 Predicted diacylglycer 98.4 8.3E-07 1.8E-11 101.0 9.0 107 344-450 878-985 (1004)
148 PF00023 Ank: Ankyrin repeat H 98.4 4.2E-07 9.2E-12 67.2 4.3 33 398-430 1-33 (33)
149 KOG0130 RNA-binding protein RB 98.4 1.5E-07 3.3E-12 89.2 2.3 80 547-629 72-152 (170)
150 KOG0105 Alternative splicing f 98.4 2.8E-07 6.1E-12 91.9 4.1 77 546-628 5-82 (241)
151 KOG0146 RNA-binding protein ET 98.4 3.6E-07 7.9E-12 95.7 5.0 94 546-643 18-116 (371)
152 KOG0153 Predicted RNA-binding 98.3 3.4E-07 7.4E-12 99.7 4.5 78 543-629 224-303 (377)
153 KOG0506 Glutaminase (contains 98.3 4.3E-07 9.3E-12 102.1 5.0 94 285-389 503-597 (622)
154 KOG0109 RNA-binding protein LA 98.3 2E-07 4.4E-12 99.0 1.9 71 548-629 3-74 (346)
155 KOG0818 GTPase-activating prot 98.3 1.7E-06 3.7E-11 97.7 8.8 86 327-421 136-222 (669)
156 KOG3609 Receptor-activated Ca2 98.3 1.7E-06 3.8E-11 104.4 9.4 126 287-427 24-159 (822)
157 KOG0109 RNA-binding protein LA 98.3 5.6E-07 1.2E-11 95.7 4.5 75 545-630 76-151 (346)
158 KOG0147 Transcriptional coacti 98.3 5.7E-07 1.2E-11 103.4 4.6 78 549-629 280-358 (549)
159 KOG0782 Predicted diacylglycer 98.3 2.4E-06 5.1E-11 97.4 9.0 118 292-421 870-989 (1004)
160 KOG4208 Nucleolar RNA-binding 98.3 1.8E-06 3.8E-11 88.4 7.0 91 547-640 49-141 (214)
161 KOG0818 GTPase-activating prot 98.3 2.5E-06 5.5E-11 96.3 8.9 89 360-449 122-217 (669)
162 KOG0705 GTPase-activating prot 98.2 2.5E-06 5.3E-11 98.1 8.2 81 344-425 636-720 (749)
163 KOG0123 Polyadenylate-binding 98.2 1.4E-06 3.1E-11 100.1 4.7 78 550-633 79-157 (369)
164 KOG0522 Ankyrin repeat protein 98.2 3.4E-06 7.4E-11 96.9 7.5 90 290-388 22-111 (560)
165 KOG4212 RNA-binding protein hn 98.1 1.9E-06 4.1E-11 95.8 3.8 79 547-628 44-123 (608)
166 KOG0131 Splicing factor 3b, su 98.1 1E-06 2.2E-11 88.3 1.3 80 548-630 97-178 (203)
167 KOG0114 Predicted RNA-binding 98.1 5E-06 1.1E-10 75.8 5.7 81 544-630 15-96 (124)
168 KOG0522 Ankyrin repeat protein 98.0 1E-05 2.3E-10 93.0 7.8 64 356-420 46-109 (560)
169 TIGR01642 U2AF_lg U2 snRNP aux 98.0 1.7E-06 3.6E-11 105.0 1.4 82 543-627 171-258 (509)
170 KOG0705 GTPase-activating prot 98.0 1.5E-05 3.3E-10 91.8 8.2 92 290-390 626-719 (749)
171 KOG0226 RNA-binding proteins [ 97.9 3.4E-06 7.4E-11 88.5 1.9 84 544-630 187-271 (290)
172 KOG0110 RNA-binding protein (R 97.9 4.3E-06 9.4E-11 98.7 2.3 85 544-631 610-695 (725)
173 KOG0415 Predicted peptidyl pro 97.9 8.7E-06 1.9E-10 88.6 4.1 80 549-631 241-321 (479)
174 KOG3609 Receptor-activated Ca2 97.9 2.5E-05 5.4E-10 94.7 8.3 120 239-390 25-156 (822)
175 KOG4661 Hsp27-ERE-TATA-binding 97.9 7.7E-06 1.7E-10 93.3 3.5 80 545-627 403-483 (940)
176 KOG0132 RNA polymerase II C-te 97.9 7.7E-06 1.7E-10 97.1 3.4 78 544-630 418-496 (894)
177 KOG0521 Putative GTPase activa 97.9 1.3E-05 2.8E-10 99.8 5.6 80 363-443 654-733 (785)
178 KOG0520 Uncharacterized conser 97.8 2.9E-05 6.4E-10 96.0 7.2 124 286-420 572-701 (975)
179 KOG0123 Polyadenylate-binding 97.8 1E-05 2.3E-10 93.1 2.9 83 544-630 267-350 (369)
180 KOG0110 RNA-binding protein (R 97.7 3.3E-05 7.2E-10 91.5 5.9 92 537-629 504-598 (725)
181 KOG2384 Major histocompatibili 97.7 5.5E-05 1.2E-09 76.7 6.3 76 355-430 2-77 (223)
182 KOG0520 Uncharacterized conser 97.7 3.3E-05 7.1E-10 95.6 5.6 123 318-449 568-697 (975)
183 KOG0124 Polypyrimidine tract-b 97.7 2.1E-05 4.6E-10 85.8 3.0 79 547-628 210-289 (544)
184 KOG0521 Putative GTPase activa 97.7 2.6E-05 5.7E-10 97.2 4.1 100 312-420 644-743 (785)
185 KOG4206 Spliceosomal protein s 97.6 2.4E-05 5.1E-10 81.6 2.1 80 548-633 10-94 (221)
186 KOG0511 Ankyrin repeat protein 97.6 0.00013 2.9E-09 80.5 7.2 77 58-142 37-113 (516)
187 KOG0116 RasGAP SH3 binding pro 97.6 4.2E-05 9E-10 88.5 3.1 78 549-629 290-367 (419)
188 KOG2384 Major histocompatibili 97.5 0.00016 3.5E-09 73.4 6.1 68 313-390 3-71 (223)
189 KOG0511 Ankyrin repeat protein 97.5 0.00029 6.2E-09 78.0 8.1 78 367-445 38-115 (516)
190 KOG4212 RNA-binding protein hn 97.4 0.0001 2.2E-09 82.5 3.4 76 542-625 531-607 (608)
191 KOG4209 Splicing factor RNPS1, 97.3 0.00033 7.2E-09 75.5 5.6 81 544-627 98-178 (231)
192 KOG0106 Alternative splicing f 97.2 0.0001 2.2E-09 77.7 1.0 71 548-629 2-73 (216)
193 KOG4454 RNA binding protein (R 97.0 0.00014 3.1E-09 75.0 -0.4 80 542-626 4-84 (267)
194 KOG0151 Predicted splicing reg 97.0 0.00068 1.5E-08 80.3 4.7 83 544-627 171-255 (877)
195 PF04059 RRM_2: RNA recognitio 96.9 0.0011 2.4E-08 61.5 4.2 79 547-627 1-85 (97)
196 KOG0533 RRM motif-containing p 96.8 0.001 2.2E-08 71.8 4.0 80 546-629 82-162 (243)
197 KOG1457 RNA binding protein (c 96.6 0.0026 5.7E-08 66.0 5.2 85 542-629 29-118 (284)
198 PF12872 OST-HTH: OST-HTH/LOTU 96.6 0.00076 1.7E-08 59.4 0.9 49 753-802 21-69 (74)
199 KOG0120 Splicing factor U2AF, 96.6 0.00091 2E-08 78.6 1.6 84 544-630 286-370 (500)
200 smart00248 ANK ankyrin repeats 96.3 0.0057 1.2E-07 41.6 4.0 29 94-122 1-29 (30)
201 KOG4211 Splicing factor hnRNP- 96.1 0.0043 9.4E-08 71.4 3.5 79 546-630 9-87 (510)
202 KOG0147 Transcriptional coacti 96.0 0.0026 5.7E-08 74.0 1.6 81 544-627 176-256 (549)
203 KOG2505 Ankyrin repeat protein 95.9 0.0095 2.1E-07 68.6 5.1 70 378-448 404-479 (591)
204 smart00248 ANK ankyrin repeats 95.9 0.013 2.8E-07 39.7 4.0 28 399-426 2-29 (30)
205 KOG1548 Transcription elongati 95.8 0.0067 1.5E-07 66.9 3.3 80 544-627 131-219 (382)
206 COG5175 MOT2 Transcriptional r 95.7 0.021 4.5E-07 62.6 6.6 82 546-629 113-203 (480)
207 PF13920 zf-C3HC4_3: Zinc fing 95.5 0.0056 1.2E-07 49.7 1.2 49 973-1025 2-50 (50)
208 KOG4660 Protein Mei2, essentia 95.3 0.0037 8E-08 73.0 -0.7 71 544-622 72-143 (549)
209 KOG0129 Predicted RNA-binding 95.3 0.0097 2.1E-07 69.0 2.5 102 515-627 347-452 (520)
210 KOG2505 Ankyrin repeat protein 95.2 0.042 9E-07 63.6 7.1 67 69-138 403-471 (591)
211 KOG4210 Nuclear localization s 95.0 0.0091 2E-07 66.7 1.0 82 546-630 183-265 (285)
212 KOG4211 Splicing factor hnRNP- 94.8 0.022 4.8E-07 65.7 3.4 76 549-628 105-181 (510)
213 KOG0106 Alternative splicing f 93.4 0.028 6E-07 59.6 0.7 71 545-626 97-168 (216)
214 KOG4849 mRNA cleavage factor I 92.8 0.048 1E-06 60.0 1.4 79 545-626 78-159 (498)
215 PF06128 Shigella_OspC: Shigel 92.6 0.23 5E-06 52.4 6.0 47 377-423 229-278 (284)
216 KOG0129 Predicted RNA-binding 92.5 0.089 1.9E-06 61.4 3.1 67 544-611 256-325 (520)
217 KOG1457 RNA binding protein (c 92.3 0.044 9.6E-07 57.2 0.3 65 545-616 208-273 (284)
218 PF06128 Shigella_OspC: Shigel 91.9 0.87 1.9E-05 48.2 9.2 120 22-178 157-279 (284)
219 PF03158 DUF249: Multigene fam 91.9 0.68 1.5E-05 47.7 8.2 111 287-420 75-191 (192)
220 KOG1100 Predicted E3 ubiquitin 91.5 0.075 1.6E-06 56.6 1.1 46 973-1026 158-203 (207)
221 KOG1995 Conserved Zn-finger pr 91.5 0.069 1.5E-06 59.8 0.7 84 544-630 63-155 (351)
222 KOG2068 MOT2 transcription fac 90.6 0.14 3E-06 57.1 2.0 83 546-630 76-164 (327)
223 PF08777 RRM_3: RNA binding mo 90.3 0.13 2.8E-06 48.8 1.3 68 550-626 4-77 (105)
224 KOG3152 TBP-binding protein, a 88.5 0.087 1.9E-06 56.3 -1.4 72 548-620 75-157 (278)
225 KOG2314 Translation initiation 88.2 0.3 6.5E-06 57.4 2.4 72 549-624 60-139 (698)
226 KOG0120 Splicing factor U2AF, 87.9 0.5 1.1E-05 56.2 4.1 64 562-626 424-489 (500)
227 KOG2193 IGF-II mRNA-binding pr 86.9 0.53 1.2E-05 53.5 3.4 79 548-635 2-82 (584)
228 KOG4307 RNA binding protein RB 86.9 1.3 2.9E-05 53.4 6.7 82 545-630 432-515 (944)
229 PF14605 Nup35_RRM_2: Nup53/35 86.5 0.28 6E-06 40.5 0.7 51 549-609 3-53 (53)
230 PF03158 DUF249: Multigene fam 85.7 6.3 0.00014 40.9 10.0 135 290-450 48-188 (192)
231 PF11929 DUF3447: Domain of un 85.6 1.3 2.8E-05 39.3 4.6 48 58-117 7-54 (76)
232 KOG0128 RNA-binding protein SA 85.6 0.26 5.6E-06 60.7 0.2 81 544-628 733-814 (881)
233 KOG1190 Polypyrimidine tract-b 85.4 1.1 2.3E-05 51.2 4.7 72 548-627 298-371 (492)
234 KOG1855 Predicted RNA-binding 85.4 0.34 7.4E-06 55.3 1.0 77 537-614 219-308 (484)
235 KOG4206 Spliceosomal protein s 84.5 0.91 2E-05 48.1 3.5 76 544-627 143-220 (221)
236 KOG1548 Transcription elongati 84.4 0.98 2.1E-05 50.5 3.9 57 562-625 291-348 (382)
237 KOG1365 RNA-binding protein Fu 84.4 0.34 7.5E-06 54.4 0.4 78 549-629 163-243 (508)
238 PF11608 Limkain-b1: Limkain b 82.5 0.43 9.4E-06 42.9 0.2 67 548-627 3-75 (90)
239 PF05172 Nup35_RRM: Nup53/35/4 82.1 1 2.2E-05 42.3 2.6 77 548-626 7-89 (100)
240 KOG0128 RNA-binding protein SA 80.5 0.32 7E-06 59.9 -1.7 69 547-618 667-735 (881)
241 PF08952 DUF1866: Domain of un 77.9 3.5 7.6E-05 41.2 4.8 55 563-628 52-106 (146)
242 KOG1365 RNA-binding protein Fu 77.7 0.63 1.4E-05 52.4 -0.4 76 548-627 281-360 (508)
243 KOG0105 Alternative splicing f 77.4 1.6 3.6E-05 44.6 2.4 69 546-624 114-185 (241)
244 PF11929 DUF3447: Domain of un 74.4 4.6 9.9E-05 35.8 4.2 47 367-421 8-54 (76)
245 KOG2202 U2 snRNP splicing fact 73.8 0.58 1.3E-05 50.4 -1.9 60 564-626 85-145 (260)
246 KOG4307 RNA binding protein RB 72.1 3.6 7.8E-05 49.8 3.8 75 547-624 867-942 (944)
247 KOG0115 RNA-binding protein p5 67.2 2.6 5.6E-05 45.5 1.1 75 548-626 32-111 (275)
248 KOG1456 Heterogeneous nuclear 65.4 12 0.00026 42.5 5.8 77 544-628 284-362 (494)
249 TIGR00570 cdk7 CDK-activating 63.1 3.5 7.5E-05 46.3 1.2 46 974-1024 4-55 (309)
250 KOG4210 Nuclear localization s 61.1 6.6 0.00014 44.1 3.0 82 546-630 87-169 (285)
251 KOG4660 Protein Mei2, essentia 60.9 15 0.00033 43.9 6.0 82 544-627 385-471 (549)
252 KOG2893 Zn finger protein [Gen 60.4 3.6 7.8E-05 43.6 0.7 30 993-1022 9-44 (341)
253 KOG1190 Polypyrimidine tract-b 57.4 11 0.00025 43.2 4.0 76 546-628 413-490 (492)
254 KOG2135 Proteins containing th 56.7 4.1 8.9E-05 47.5 0.4 61 560-629 386-446 (526)
255 KOG1996 mRNA splicing factor [ 55.7 11 0.00024 41.4 3.4 64 561-626 300-364 (378)
256 KOG2113 Predicted RNA binding 55.5 5.6 0.00012 44.0 1.2 50 973-1028 343-392 (394)
257 KOG0112 Large RNA-binding prot 51.2 10 0.00022 47.7 2.5 77 544-624 369-446 (975)
258 KOG0112 Large RNA-binding prot 47.9 7.3 0.00016 48.9 0.7 76 545-629 453-531 (975)
259 KOG4265 Predicted E3 ubiquitin 41.8 12 0.00025 42.7 1.0 49 973-1025 290-338 (349)
260 KOG4676 Splicing factor, argin 40.5 13 0.00027 42.6 1.0 77 549-626 9-87 (479)
261 PF15023 DUF4523: Protein of u 39.6 55 0.0012 32.7 5.0 71 546-626 85-159 (166)
262 KOG2416 Acinus (induces apopto 39.5 12 0.00027 44.8 0.8 79 544-630 441-523 (718)
263 KOG0292 Vesicle coat complex C 35.3 1.3E+02 0.0029 38.3 8.5 132 14-203 593-725 (1202)
264 KOG1456 Heterogeneous nuclear 34.7 78 0.0017 36.3 5.9 70 553-630 128-200 (494)
265 KOG0320 Predicted E3 ubiquitin 34.4 18 0.00039 37.2 1.0 51 968-1024 129-179 (187)
266 smart00184 RING Ring finger. E 33.3 24 0.00053 25.5 1.3 26 989-1018 14-39 (39)
267 KOG3614 Ca2+/Mg2+-permeable ca 33.2 1.1E+03 0.023 32.3 16.3 28 156-183 428-455 (1381)
268 KOG4285 Mitotic phosphoprotein 32.3 43 0.00093 37.3 3.4 58 564-630 213-271 (350)
269 PF03467 Smg4_UPF3: Smg-4/UPF3 30.3 45 0.00097 34.8 3.1 82 546-627 6-96 (176)
270 cd00162 RING RING-finger (Real 29.1 35 0.00076 25.7 1.6 30 988-1021 15-44 (45)
271 KOG2253 U1 snRNP complex, subu 28.3 13 0.00028 45.3 -1.4 69 545-625 38-107 (668)
272 KOG4454 RNA binding protein (R 27.6 24 0.00052 37.5 0.5 72 544-619 77-153 (267)
273 PF04847 Calcipressin: Calcipr 27.0 61 0.0013 34.0 3.4 57 562-627 10-69 (184)
274 PRK13130 H/ACA RNA-protein com 26.4 21 0.00045 29.9 -0.1 34 996-1042 7-40 (56)
275 PF14369 zf-RING_3: zinc-finge 26.0 11 0.00025 28.3 -1.6 26 995-1020 3-29 (35)
276 COG2260 Predicted Zn-ribbon RN 25.4 23 0.00049 29.7 -0.1 32 997-1041 8-39 (59)
277 PF14205 Cys_rich_KTR: Cystein 24.3 19 0.0004 29.8 -0.8 29 974-1006 5-40 (55)
278 COG2920 DsrC Dissimilatory sul 23.9 17 0.00038 33.9 -1.1 35 937-973 21-65 (111)
279 PF03880 DbpA: DbpA RNA bindin 22.6 79 0.0017 27.8 2.8 35 591-626 39-74 (74)
280 KOG0978 E3 ubiquitin ligase in 22.5 39 0.00084 42.3 1.1 40 974-1020 644-686 (698)
281 PF04053 Coatomer_WDAD: Coatom 22.1 93 0.002 37.4 4.2 47 158-204 355-401 (443)
282 PF00097 zf-C3HC4: Zinc finger 21.7 50 0.0011 25.1 1.2 28 988-1018 14-41 (41)
283 PF09963 DUF2197: Uncharacteri 21.3 41 0.00089 28.1 0.7 12 1012-1023 2-13 (56)
284 KOG2932 E3 ubiquitin ligase in 21.0 33 0.00072 38.2 0.1 47 975-1028 92-139 (389)
No 1
>PHA02876 ankyrin repeat protein; Provisional
Probab=100.00 E-value=6.3e-46 Score=462.19 Aligned_cols=364 Identities=18% Similarity=0.210 Sum_probs=231.0
Q ss_pred HHHHHHHhcCHHHHHHHHHhhccccccccccccccccchHHHHHHHcCCHHHHHHHHhCCCCCccccccccCCCCChHHH
Q 001613 21 LIINSLLEDDKKQLINVSKRHFIDNSLDNADQQTAIVTKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALH 100 (1044)
Q Consensus 21 ~ll~AIl~dD~~~L~~li~~~~~~~~l~~~~~~~~~~~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH 100 (1044)
.+.+++..++.+.++..+.+.-....=.+....+..+.||||+||.+|+.|+|+.|++.++. .++..|. .|.||||
T Consensus 5 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~LH~A~~~g~~e~V~~ll~~~~~---~~~~~~~-~~~tpLh 80 (682)
T PHA02876 5 DLYRIMCRGNCIDILSAIDNYDLHKHGANQCENESIPFTAIHQALQLRQIDIVEEIIQQNPE---LIYITDH-KCHSTLH 80 (682)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHhhhHHHHHHHhCcc---cchhhch-hhccccc
Confidence 56777888777776666654311100001122245679999999999999999999998722 2567777 8999999
Q ss_pred HHH----------------------------------------------------------------------HcCCHHH
Q 001613 101 LAA----------------------------------------------------------------------ESHTARC 110 (1044)
Q Consensus 101 ~Aa----------------------------------------------------------------------~~G~~ei 110 (1044)
+|+ ..|+.++
T Consensus 81 ~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i 160 (682)
T PHA02876 81 TICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLI 160 (682)
T ss_pred cccCCCCccccccccccchhhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHH
Confidence 766 5578899
Q ss_pred HHHHHHcCCCCCcccCCCCCchHHHHHHhCCCcceec----------CCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcc
Q 001613 111 VELLLKKRARTDIRSKDGRRLLPLELSLSSSRMDVIW----------NPDEYSVEDLVVILGQKNLTTVKLLSQKTKELD 180 (1044)
Q Consensus 111 VklLL~~GAdvn~~d~~G~T~lpLh~Aa~~g~~eIv~----------~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~ 180 (1044)
+++|+++|+++|.+|..|+| |||+|+..|+.++++ ..+..+.++|+.|+..++.+++++|++.+.++.
T Consensus 161 ~k~Ll~~Gadvn~~d~~G~T--pLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~ 238 (682)
T PHA02876 161 AEMLLEGGADVNAKDIYCIT--PIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNIN 238 (682)
T ss_pred HHHHHhCCCCCCCCCCCCCC--HHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC
Confidence 99999999999999999998 999999999988774 223446788888888888888888888776654
Q ss_pred hHHHHhhhcCcHHHHHHHHHHH--hhhhhhHHHHhccCCCcccccchhhHHHHHHHHhcCCchHHHHHHHcCCC-CCcch
Q 001613 181 EVAYANAVGGRIVALAALLIVA--ADKVNESILVLHDSDLGAKEKTTIYECVIREALALGRATKLQRAVKRNST-PTTSQ 257 (1044)
Q Consensus 181 ~~~~~~a~~g~~~~l~~ll~~a--~~~~~~~~l~~~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~-~~~~~ 257 (1044)
.. .. .++.+. .......+++..+++++..+.. |.||||+|+..++. .+
T Consensus 239 ~~--------~~----~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~--------------g~TpLh~Aa~~~~~~~i--- 289 (682)
T PHA02876 239 KN--------DL----SLLKAIRNEDLETSLLLYDAGFSVNSIDDC--------------KNTPLHHASQAPSLSRL--- 289 (682)
T ss_pred CC--------cH----HHHHHHHcCCHHHHHHHHHCCCCCCCCCCC--------------CCCHHHHHHhCCCHHHH---
Confidence 21 00 111111 1111123344445555554444 56666666655543 12
Q ss_pred hHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCC
Q 001613 258 SAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQAG-DEDVIEILLKSKNIDINDADADADGNSALHCALKTSM 336 (1044)
Q Consensus 258 ~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~Aa~~G-~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~ 336 (1044)
+++|++.|++++.. |..|.||||+|+..| +.+++++|+.. |+++ +..|..|.||||+|+..+
T Consensus 290 -----------v~lLl~~gadin~~--d~~g~TpLh~Aa~~g~~~~~v~~Ll~~-gadi--n~~d~~g~TpLh~A~~~~- 352 (682)
T PHA02876 290 -----------VPKLLERGADVNAK--NIKGETPLYLMAKNGYDTENIRTLIML-GADV--NAADRLYITPLHQASTLD- 352 (682)
T ss_pred -----------HHHHHHCCCCCCCc--CCCCCCHHHHHHHhCCCHHHHHHHHHc-CCCC--CCcccCCCcHHHHHHHhC-
Confidence 55566666665543 556666666666665 35666666665 6665 555666666666665543
Q ss_pred CcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCC-HHHH
Q 001613 337 GLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDH-MVCA 415 (1044)
Q Consensus 337 ~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~-~~iV 415 (1044)
.+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..++ ..++
T Consensus 353 ------~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad-~~~~~~~g~T~Lh~A~~~~~~~~~v 425 (682)
T PHA02876 353 ------RNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD-IEALSQKIGTALHFALCGTNPYMSV 425 (682)
T ss_pred ------CcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-ccccCCCCCchHHHHHHcCCHHHHH
Confidence 145566666666666666666666666666666666666666666665 66666666666666655443 3455
Q ss_pred HHHHHCCCCcccccCCCCcHHHHHHHcC
Q 001613 416 EVLLRWGANSEVLNLRRERPIDFAKSQD 443 (1044)
Q Consensus 416 klLL~~GAdin~~d~~G~TpLh~Aa~~g 443 (1044)
++|+++|+++|.+|..|+||||+|+..+
T Consensus 426 k~Ll~~gadin~~d~~G~TpLh~Aa~~~ 453 (682)
T PHA02876 426 KTLIDRGANVNSKNKDLSTPLHYACKKN 453 (682)
T ss_pred HHHHhCCCCCCcCCCCCChHHHHHHHhC
Confidence 6666666666666666666666665543
No 2
>PHA02876 ankyrin repeat protein; Provisional
Probab=100.00 E-value=3.5e-43 Score=437.57 Aligned_cols=328 Identities=26% Similarity=0.287 Sum_probs=285.7
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCCccccccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCchHHHHHH
Q 001613 59 KLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLLPLELSL 138 (1044)
Q Consensus 59 T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T~lpLh~Aa 138 (1044)
++|+.|+..|+.+++++|++.| +++|.+|. .|.||||+||..|+.++|++|+++||+++..+.+|.| |||+|+
T Consensus 147 ~~l~~~i~~~~~~i~k~Ll~~G----advn~~d~-~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t--~L~~A~ 219 (682)
T PHA02876 147 KLIKERIQQDELLIAEMLLEGG----ADVNAKDI-YCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLS--VLECAV 219 (682)
T ss_pred HHHHHHHHCCcHHHHHHHHhCC----CCCCCCCC-CCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCC--HHHHHH
Confidence 3444555778999999999999 99999999 9999999999999999999999999999999999998 999999
Q ss_pred hCCCcceecC------CCCCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhh---hhhH
Q 001613 139 SSSRMDVIWN------PDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADK---VNES 209 (1044)
Q Consensus 139 ~~g~~eIv~~------~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~---~~~~ 209 (1044)
..++.++++. ......++|+.|+..++.+++++|++.|++++... ..|. +.++.++... ....
T Consensus 220 ~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d----~~g~----TpLh~Aa~~~~~~~iv~ 291 (682)
T PHA02876 220 DSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSID----DCKN----TPLHHASQAPSLSRLVP 291 (682)
T ss_pred HcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCC----CCCC----CHHHHHHhCCCHHHHHH
Confidence 9999988742 12235678999999999999999999999886431 1122 2333333322 1245
Q ss_pred HHHhccCCCcccccchhhHHHHHHHHhcCCchHHHHHHHcCC-CCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCC
Q 001613 210 ILVLHDSDLGAKEKTTIYECVIREALALGRATKLQRAVKRNS-TPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKV 288 (1044)
Q Consensus 210 ~l~~~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~-~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G 288 (1044)
+++..+++++..+.. |.||||+|+..|. .+. +++|+..|++++.. |..|
T Consensus 292 lLl~~gadin~~d~~--------------g~TpLh~Aa~~g~~~~~--------------v~~Ll~~gadin~~--d~~g 341 (682)
T PHA02876 292 KLLERGADVNAKNIK--------------GETPLYLMAKNGYDTEN--------------IRTLIMLGADVNAA--DRLY 341 (682)
T ss_pred HHHHCCCCCCCcCCC--------------CCCHHHHHHHhCCCHHH--------------HHHHHHcCCCCCCc--ccCC
Confidence 667789999988877 9999999999984 555 99999999999976 9999
Q ss_pred CcHHHHHHHc-CCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCc
Q 001613 289 GPPLILATQA-GDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLT 367 (1044)
Q Consensus 289 ~TpLh~Aa~~-G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~T 367 (1044)
.||||+|+.. ++.+++++|++. |+++ +.+|..|.||||+|+..| +.+++++|+++|++++..+..|.|
T Consensus 342 ~TpLh~A~~~~~~~~iv~lLl~~-gadi--n~~d~~G~TpLh~Aa~~~--------~~~iv~~Ll~~gad~~~~~~~g~T 410 (682)
T PHA02876 342 ITPLHQASTLDRNKDIVITLLEL-GANV--NARDYCDKTPIHYAAVRN--------NVVIINTLLDYGADIEALSQKIGT 410 (682)
T ss_pred CcHHHHHHHhCCcHHHHHHHHHc-CCCC--ccCCCCCCCHHHHHHHcC--------CHHHHHHHHHCCCCccccCCCCCc
Confidence 9999999985 578999999998 9999 899999999999999999 999999999999999999999999
Q ss_pred HHHHHHHcCC-HHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcC-CHHHHHHHHHCCCCcccccCCCCcHHHHHHHcC
Q 001613 368 ALHIAAGSGN-SQALEDLIRKEPDCINLKTIMMETPLFFAVKND-HMVCAEVLLRWGANSEVLNLRRERPIDFAKSQD 443 (1044)
Q Consensus 368 pLh~Aa~~g~-~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g-~~~iVklLL~~GAdin~~d~~G~TpLh~Aa~~g 443 (1044)
|||+|+..++ ..++++|+++|++ +|.+|..|+||||+|+..| +.+++++|+++|||+|.+|..|.|||++|+.++
T Consensus 411 ~Lh~A~~~~~~~~~vk~Ll~~gad-in~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~~ 487 (682)
T PHA02876 411 ALHFALCGTNPYMSVKTLIDRGAN-VNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYH 487 (682)
T ss_pred hHHHHHHcCCHHHHHHHHHhCCCC-CCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhC
Confidence 9999998766 5679999999999 9999999999999999976 789999999999999999999999999998754
No 3
>PHA02946 ankyin-like protein; Provisional
Probab=100.00 E-value=7.9e-41 Score=394.32 Aligned_cols=346 Identities=15% Similarity=0.198 Sum_probs=277.3
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHhhccccccccccccccccchHHHHHHH--cCCHHHHHHHHhCCCCCccccccccCCCC
Q 001613 18 ETTLIINSLLEDDKKQLINVSKRHFIDNSLDNADQQTAIVTKLLRVSCI--FDSVSCATSLVNGDLGPVALVNEVEESSG 95 (1044)
Q Consensus 18 e~~~ll~AIl~dD~~~L~~li~~~~~~~~l~~~~~~~~~~~T~Lh~AA~--~G~~eivk~LL~~g~~~~adiN~~d~~~G 95 (1044)
.+..+..++...+.+.+..++.... .....++||.++. .++.++|++|++.| +++|.+|. .|
T Consensus 9 ~~~sl~~~~~~~n~~~~~~~l~~~~-----------~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~G----advn~~d~-~G 72 (446)
T PHA02946 9 YYLSLYAKYNSKNLDVFRNMLQAIE-----------PSGNYHILHAYCGIKGLDERFVEELLHRG----YSPNETDD-DG 72 (446)
T ss_pred HHHHHHHHHccCcHHHHHHHHhccC-----------CCCCChHHHHHHHhcCCCHHHHHHHHHCc----CCCCccCC-CC
Confidence 3455666777778787766664321 1123789998774 34678999999998 99999999 99
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCchHHHHHHhCCCcceecCCCCCchhHHHHHHhcCCHHHHHHHHHc
Q 001613 96 MTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLLPLELSLSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQK 175 (1044)
Q Consensus 96 ~TpLH~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T~lpLh~Aa~~g~~eIv~~~~~~~~t~L~~Ai~~g~~eivklLl~~ 175 (1044)
.||||+||..|+.++|++||++|||+|.+|.+|+| |||+|+..++ +..+++++|+++
T Consensus 73 ~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~T--pLh~A~~~~~---------------------~~~e~v~lLl~~ 129 (446)
T PHA02946 73 NYPLHIASKINNNRIVAMLLTHGADPNACDKQHKT--PLYYLSGTDD---------------------EVIERINLLVQY 129 (446)
T ss_pred CCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCC--HHHHHHHcCC---------------------chHHHHHHHHHc
Confidence 99999999999999999999999999999999999 9999876543 246778888988
Q ss_pred CCCcchHHHHhhhcCcHHHHHHHHHH-HhhhhhhHHHHhccCCCcccccchhhHHHHHHHHhcCCchHHHHHHHcCCCCC
Q 001613 176 TKELDEVAYANAVGGRIVALAALLIV-AADKVNESILVLHDSDLGAKEKTTIYECVIREALALGRATKLQRAVKRNSTPT 254 (1044)
Q Consensus 176 gadi~~~~~~~a~~g~~~~l~~ll~~-a~~~~~~~~l~~~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~ 254 (1044)
|++++... ...+.. .++.+ .......++++.++++++.++.. |.||||+|+..++...
T Consensus 130 Gadin~~~---d~~g~t----pL~aa~~~~~~vv~~Ll~~gad~~~~d~~--------------G~t~Lh~A~~~~~~~~ 188 (446)
T PHA02946 130 GAKINNSV---DEEGCG----PLLACTDPSERVFKKIMSIGFEARIVDKF--------------GKNHIHRHLMSDNPKA 188 (446)
T ss_pred CCCccccc---CCCCCc----HHHHHHCCChHHHHHHHhccccccccCCC--------------CCCHHHHHHHhcCCCH
Confidence 88876310 111221 11111 11222345666778888888777 9999999998776532
Q ss_pred cchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHH
Q 001613 255 TSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQAG--DEDVIEILLKSKNIDINDADADADGNSALHCAL 332 (1044)
Q Consensus 255 ~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~Aa~~G--~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa 332 (1044)
..+++|++.|++++.. |..|.||||+|+..| +.+++++|+. |+++ |.+|..|.||||+|+
T Consensus 189 ------------~~v~~Ll~~Gadin~~--d~~G~TpLH~Aa~~~~~~~~iv~lLl~--gadi--n~~d~~G~TpLh~A~ 250 (446)
T PHA02946 189 ------------STISWMMKLGISPSKP--DHDGNTPLHIVCSKTVKNVDIINLLLP--STDV--NKQNKFGDSPLTLLI 250 (446)
T ss_pred ------------HHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCCcHHHHHHHHc--CCCC--CCCCCCCCCHHHHHH
Confidence 1289999999999976 999999999999986 8899999984 8888 899999999999999
Q ss_pred hcCCCcccccch-HHHHHHHHhcCCeee--------------------ec-CCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 001613 333 KTSMGLSQHILQ-NRIVGILLKHGAIVS--------------------QQ-NKLGLTALHIAAGSGNSQALEDLIRKEPD 390 (1044)
Q Consensus 333 ~~g~~~~~~~~~-~~iVklLLe~GAdvn--------------------~~-d~~G~TpLh~Aa~~g~~eiVklLL~~gad 390 (1044)
..+ + .+++++|+++|++++ .. +..|.||||+|+..|+.++|++||++++
T Consensus 251 ~~~--------~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~- 321 (446)
T PHA02946 251 KTL--------SPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI- 321 (446)
T ss_pred HhC--------ChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC-
Confidence 987 5 589999999987532 11 2357899999999999999999999875
Q ss_pred CcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHHHcChHHHHHHhhhcCccc
Q 001613 391 CINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLLKAANTCHTNL 458 (1044)
Q Consensus 391 ~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~Ll~~~~~n~~d~ 458 (1044)
.|+||||+|+.+++.++|++|+.+||++|.. ..|.||||+|+.++..++++.+.....+.
T Consensus 322 -------~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~~~~~~~~~ll~~~~~~ 381 (446)
T PHA02946 322 -------ICEDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGHTCMSECVRLNNPVILSKLMLHNPTS 381 (446)
T ss_pred -------ccccHHHHHHHhCHHHHHHHHHHCCCCCCCc-cccccHHHHHHHcCCHHHHHHHHhcCccH
Confidence 3799999999999999999999999999996 58999999999999999999776655543
No 4
>PHA02874 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=385.16 Aligned_cols=302 Identities=24% Similarity=0.264 Sum_probs=262.9
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCCccccccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCchHHHHHH
Q 001613 59 KLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLLPLELSL 138 (1044)
Q Consensus 59 T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T~lpLh~Aa 138 (1044)
..|+.|+..|+++.|+.|++.+ ...+|..+. .|.||||+|+..|+.++|++|+++|++++..+..|.| |||+|+
T Consensus 3 ~~l~~ai~~gd~~~v~~ll~~~---~~~~n~~~~-~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t--~L~~A~ 76 (434)
T PHA02874 3 QDLRMCIYSGDIEAIEKIIKNK---GNCINISVD-ETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPH--PLLTAI 76 (434)
T ss_pred HHHHHHHhcCCHHHHHHHHHcC---CCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC--HHHHHH
Confidence 3589999999999999999765 256888888 9999999999999999999999999999999888877 777776
Q ss_pred hCCCcceecCCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHHhccCCC
Q 001613 139 SSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLHDSDL 218 (1044)
Q Consensus 139 ~~g~~eIv~~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~~~~adi 218 (1044)
..| +.+++++|+++|++....... .........++..++++
T Consensus 77 ~~~-----------------------~~~iv~~Ll~~g~~~~~~~~~----------------~~~~~~i~~ll~~g~d~ 117 (434)
T PHA02874 77 KIG-----------------------AHDIIKLLIDNGVDTSILPIP----------------CIEKDMIKTILDCGIDV 117 (434)
T ss_pred HcC-----------------------CHHHHHHHHHCCCCCCcchhc----------------cCCHHHHHHHHHCcCCC
Confidence 655 467799999999887532110 01112234566778888
Q ss_pred cccccchhhHHHHHHHHhcCCchHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHc
Q 001613 219 GAKEKTTIYECVIREALALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQA 298 (1044)
Q Consensus 219 n~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~Aa~~ 298 (1044)
+..+.. |.||||+|+..|+.++ +++|++.|++++.. |..|.||||+|+..
T Consensus 118 n~~~~~--------------g~T~Lh~A~~~~~~~~--------------v~~Ll~~gad~n~~--d~~g~tpLh~A~~~ 167 (434)
T PHA02874 118 NIKDAE--------------LKTFLHYAIKKGDLES--------------IKMLFEYGADVNIE--DDNGCYPIHIAIKH 167 (434)
T ss_pred CCCCCC--------------CccHHHHHHHCCCHHH--------------HHHHHhCCCCCCCc--CCCCCCHHHHHHHC
Confidence 887776 9999999999999988 99999999999876 89999999999999
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcCCH
Q 001613 299 GDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNS 378 (1044)
Q Consensus 299 G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g~~ 378 (1044)
|+.+++++|++. |+++ +..+..|.||||+|+..| +.+++++|+++|++++.++..|.||||+|+..+.
T Consensus 168 ~~~~iv~~Ll~~-g~~~--n~~~~~g~tpL~~A~~~g--------~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~- 235 (434)
T PHA02874 168 NFFDIIKLLLEK-GAYA--NVKDNNGESPLHNAAEYG--------DYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR- 235 (434)
T ss_pred CcHHHHHHHHHC-CCCC--CCCCCCCCCHHHHHHHcC--------CHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-
Confidence 999999999999 9999 889999999999999999 9999999999999999999999999999999865
Q ss_pred HHHHHHHhcCCCCcccCCCCCCcHHHHHHHcC-CHHHHHHHHHCCCCcccccCCCCcHHHHHHHcC-hHHHHH
Q 001613 379 QALEDLIRKEPDCINLKTIMMETPLFFAVKND-HMVCAEVLLRWGANSEVLNLRRERPIDFAKSQD-MRFLLK 449 (1044)
Q Consensus 379 eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g-~~~iVklLL~~GAdin~~d~~G~TpLh~Aa~~g-~~~Ll~ 449 (1044)
+++++|+ .+++ +|.+|..|+||||+|+..+ +.+++++|+++|||++.+|..|.||||+|+..+ ...+++
T Consensus 236 ~~i~~Ll-~~~~-in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~~~~~~ik 306 (434)
T PHA02874 236 SAIELLI-NNAS-INDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIK 306 (434)
T ss_pred HHHHHHH-cCCC-CCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCccHHHH
Confidence 5677776 5777 9999999999999999976 899999999999999999999999999999887 333433
No 5
>PHA02730 ankyrin-like protein; Provisional
Probab=100.00 E-value=3e-40 Score=393.82 Aligned_cols=363 Identities=13% Similarity=0.114 Sum_probs=280.5
Q ss_pred cccccchHHHHHHHcC---CHHHHHHHHhCCCCCccccccccCCCCChHHHHHHHcC--CHHHHHHHHHcCC--CCCccc
Q 001613 53 QTAIVTKLLRVSCIFD---SVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAESH--TARCVELLLKKRA--RTDIRS 125 (1044)
Q Consensus 53 ~~~~~~T~Lh~AA~~G---~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~G--~~eiVklLL~~GA--dvn~~d 125 (1044)
.+..|.||||+|+..| +.++|++||++| |++|++|. .|+||||+|+..| +.+||++||++|+ +++..+
T Consensus 37 kd~~G~TaLh~A~~~~~~~~~eivklLLs~G----Adin~kD~-~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~ 111 (672)
T PHA02730 37 IDRRGNNALHCYVSNKCDTDIKIVRLLLSRG----VERLCRNN-EGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTS 111 (672)
T ss_pred cCCCCCcHHHHHHHcCCcCcHHHHHHHHhCC----CCCcccCC-CCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccccc
Confidence 4456899999999997 599999999999 99999999 9999999999977 7999999999965 457777
Q ss_pred CCCCCchHHHHHHhCCCcceecC------------CC----CCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHH---h
Q 001613 126 KDGRRLLPLELSLSSSRMDVIWN------------PD----EYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYA---N 186 (1044)
Q Consensus 126 ~~G~T~lpLh~Aa~~g~~eIv~~------------~~----~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~---~ 186 (1044)
..+.+++++..+..+++.++++. .+ ..+.++++.+...++.++|++|+++|++++-..+. .
T Consensus 112 ~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~ 191 (672)
T PHA02730 112 NINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMY 191 (672)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccc
Confidence 77888444444444888875531 11 14789999999999999999999999998533211 1
Q ss_pred hhcCcHHHHH-HHHH----HHhhhhhhHHHHhccCCCcccccchhhHHHHHHHHhcCCchHHHH--HHHcCCCCCcchhH
Q 001613 187 AVGGRIVALA-ALLI----VAADKVNESILVLHDSDLGAKEKTTIYECVIREALALGRATKLQR--AVKRNSTPTTSQSA 259 (1044)
Q Consensus 187 a~~g~~~~l~-~ll~----~a~~~~~~~~l~~~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~--A~~~g~~~~~~~~~ 259 (1044)
......+.+. .++. ........++|+.+|+++|.++.. |.||||+ +...++.++
T Consensus 192 ~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~--------------G~TpLh~~~~~~~~~~ei----- 252 (672)
T PHA02730 192 DSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEG--------------GSLPIQYYWSCSTIDIEI----- 252 (672)
T ss_pred cCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCC--------------CCCHHHHHHHcCcccHHH-----
Confidence 1112222222 2222 111223368899999999999988 9999996 444455666
Q ss_pred HHHHhhHHHHHHHHH--------------------------------cCCCCCC--------------c----cCCCCCC
Q 001613 260 EKRKLLLLEIELLQL--------------------------------FGAVANG--------------S----CTDKKVG 289 (1044)
Q Consensus 260 ~~~~~l~~~velLl~--------------------------------~GAdin~--------------~----~~d~~G~ 289 (1044)
+++|++ +|+|+.. . ..+..|.
T Consensus 253 ---------v~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (672)
T PHA02730 253 ---------VKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREY 323 (672)
T ss_pred ---------HHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhcccccccccc
Confidence 777777 6776644 0 1355665
Q ss_pred c---------------------HHHHHHHcC---CHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchH
Q 001613 290 P---------------------PLILATQAG---DEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQN 345 (1044)
Q Consensus 290 T---------------------pLh~Aa~~G---~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~ 345 (1044)
+ .||.-...+ +.++|++||++ ||++ |.. ..|.||||+|+..+.. ..+.
T Consensus 324 n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~-GAdI--N~k-~~G~TpLH~Aa~~nnn----~i~~ 395 (672)
T PHA02730 324 NHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDN-GATM--DKT-TDNNYPLHDYFVNNNN----IVDV 395 (672)
T ss_pred chhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHC-CCCC--CcC-CCCCcHHHHHHHHcCC----cchH
Confidence 4 788888766 58999999999 9999 654 7999999999987610 0028
Q ss_pred HHHHHHHhcCC--eeeecCCCCCcHHHH---HHHcC---------CHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCC
Q 001613 346 RIVGILLKHGA--IVSQQNKLGLTALHI---AAGSG---------NSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDH 411 (1044)
Q Consensus 346 ~iVklLLe~GA--dvn~~d~~G~TpLh~---Aa~~g---------~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~ 411 (1044)
+++++|+++|+ ++|.+|..|.||||. |...+ ..+++++|+++|++ +|.+|..|+||||+|+..++
T Consensus 396 eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GAD-INakD~~G~TPLh~Aa~~~~ 474 (672)
T PHA02730 396 NVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDD-IDMIDNENKTLLYYAVDVNN 474 (672)
T ss_pred HHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccc-hhccCCCCCCHHHHHHHhCC
Confidence 99999999998 699999999999994 33232 23579999999999 99999999999999999999
Q ss_pred HHHHHHHHHCCCCcccccC-CCCcHHHHHHHc--ChHHHHHHhhhcCcc
Q 001613 412 MVCAEVLLRWGANSEVLNL-RRERPIDFAKSQ--DMRFLLKAANTCHTN 457 (1044)
Q Consensus 412 ~~iVklLL~~GAdin~~d~-~G~TpLh~Aa~~--g~~~Ll~~~~~n~~d 457 (1044)
.+++++|+++||++|.+|. .|.||||+|+.. +..++++.+-....+
T Consensus 475 ~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~ 523 (672)
T PHA02730 475 IQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPT 523 (672)
T ss_pred HHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCC
Confidence 9999999999999999997 599999999984 677777755444443
No 6
>PHA02946 ankyin-like protein; Provisional
Probab=100.00 E-value=2.8e-39 Score=381.09 Aligned_cols=347 Identities=18% Similarity=0.167 Sum_probs=285.8
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCCccccccccCCCCChHHHHHHH--cCCHHHHHHHHHcCCCCCcccCCCCCchHHHH
Q 001613 59 KLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAE--SHTARCVELLLKKRARTDIRSKDGRRLLPLEL 136 (1044)
Q Consensus 59 T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~--~G~~eiVklLL~~GAdvn~~d~~G~T~lpLh~ 136 (1044)
-+|..++..++.+.++.++... ....+.++||.++. .++.++|++||++|+++|.+|.+|+| |||+
T Consensus 11 ~sl~~~~~~~n~~~~~~~l~~~----------~~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~T--pLh~ 78 (446)
T PHA02946 11 LSLYAKYNSKNLDVFRNMLQAI----------EPSGNYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNY--PLHI 78 (446)
T ss_pred HHHHHHHccCcHHHHHHHHhcc----------CCCCCChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCC--HHHH
Confidence 3467888889999999999753 11134699998774 45789999999999999999999999 8888
Q ss_pred HHhCCCcceecCCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHHhccC
Q 001613 137 SLSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLHDS 216 (1044)
Q Consensus 137 Aa~~g~~eIv~~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~~~~a 216 (1044)
|+..|+ .+++++|+++|++++.
T Consensus 79 Aa~~g~-----------------------~eiv~lLL~~GAdin~----------------------------------- 100 (446)
T PHA02946 79 ASKINN-----------------------NRIVAMLLTHGADPNA----------------------------------- 100 (446)
T ss_pred HHHcCC-----------------------HHHHHHHHHCcCCCCC-----------------------------------
Confidence 877665 6679999999887653
Q ss_pred CCcccccchhhHHHHHHHHhcCCchHHHHHHHcCC--CCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHH
Q 001613 217 DLGAKEKTTIYECVIREALALGRATKLQRAVKRNS--TPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLIL 294 (1044)
Q Consensus 217 din~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~--~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~ 294 (1044)
++.. |.||||+|+..+. .++ +++|+++|++++.. .|..|.||||
T Consensus 101 ----~d~~--------------g~TpLh~A~~~~~~~~e~--------------v~lLl~~Gadin~~-~d~~g~tpL~- 146 (446)
T PHA02946 101 ----CDKQ--------------HKTPLYYLSGTDDEVIER--------------INLLVQYGAKINNS-VDEEGCGPLL- 146 (446)
T ss_pred ----CCCC--------------CCCHHHHHHHcCCchHHH--------------HHHHHHcCCCcccc-cCCCCCcHHH-
Confidence 3333 9999999987664 334 89999999999852 4889999997
Q ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHH
Q 001613 295 ATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAG 374 (1044)
Q Consensus 295 Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~ 374 (1044)
|+..|+.+++++|++. |+++ +.+|..|+||||+|+..+. .+.+++++|+++|++++.+|..|+||||+|+.
T Consensus 147 aa~~~~~~vv~~Ll~~-gad~--~~~d~~G~t~Lh~A~~~~~------~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~ 217 (446)
T PHA02946 147 ACTDPSERVFKKIMSI-GFEA--RIVDKFGKNHIHRHLMSDN------PKASTISWMMKLGISPSKPDHDGNTPLHIVCS 217 (446)
T ss_pred HHHCCChHHHHHHHhc-cccc--cccCCCCCCHHHHHHHhcC------CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 6678999999999999 9999 8999999999999998762 26799999999999999999999999999999
Q ss_pred cC--CHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCC-HHHHHHHHHCCCCcccccCCCCcHHHHHHHcChHHHHHHh
Q 001613 375 SG--NSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDH-MVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLLKAA 451 (1044)
Q Consensus 375 ~g--~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~-~~iVklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~Ll~~~ 451 (1044)
.| +.+++++|+. +++ +|.+|..|.||||+|+..++ .+++++|+++|++++ ++| +++|+..+..++++.+
T Consensus 218 ~~~~~~~iv~lLl~-gad-in~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~-----~~~-~~~a~~~~~~~~~e~l 289 (446)
T PHA02946 218 KTVKNVDIINLLLP-STD-VNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVIT-----DQT-VNICIFYDRDDVLEII 289 (446)
T ss_pred cCCCcHHHHHHHHc-CCC-CCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCC-----CcH-HHHHHHcCchHHHHHH
Confidence 86 8899999985 777 99999999999999999988 589999999998764 333 8888888877766654
Q ss_pred hhcCccccccchhhhhhhhcCChhhhhhHHHhhhcccCCCCccccccCCceeeeecccccCccccccccccccccccccc
Q 001613 452 NTCHTNLAFLNQEKQNASLESDEDISGTCEALLSMVDDNSNTERICSGTKIEVCKYYESHSGCIRGSKCFYALGEEQHRK 531 (1044)
Q Consensus 452 ~~n~~d~~~~~~~l~~A~~~~~~~i~~~~~~l~~~~d~~~~~~~~~~~~~~~t~L~~Aa~~G~~eivk~Ll~~GAd~~~~ 531 (1044)
+.... ..+.++++.|+..++.++++.+.. .+ ..++||||+|+..|+.+++++|+.+|++++..
T Consensus 290 ~~~g~--~~~~TpLh~Aa~~g~~eivk~Ll~-------~~--------~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~ 352 (446)
T PHA02946 290 NDKGK--QYDSTDFKMAVEVGSIRCVKYLLD-------ND--------IICEDAMYYAVLSEYETMVDYLLFNHFSVDSV 352 (446)
T ss_pred HHcCc--ccCCCHHHHHHHcCCHHHHHHHHH-------CC--------CccccHHHHHHHhCHHHHHHHHHHCCCCCCCc
Confidence 44322 234588888888888888775432 11 23578999999999999999999999999985
Q ss_pred CCCcccccccccc
Q 001613 532 MNPGMCMIHASTQ 544 (1044)
Q Consensus 532 d~~G~tpLh~aa~ 544 (1044)
..|.|++|.+..
T Consensus 353 -~~G~t~l~~a~~ 364 (446)
T PHA02946 353 -VNGHTCMSECVR 364 (446)
T ss_pred -cccccHHHHHHH
Confidence 689999998873
No 7
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=100.00 E-value=3.9e-39 Score=391.24 Aligned_cols=183 Identities=17% Similarity=0.113 Sum_probs=144.6
Q ss_pred HHHHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCCCCCCCC
Q 001613 244 QRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQ--AGDEDVIEILLKSKNIDINDADAD 321 (1044)
Q Consensus 244 ~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~Aa~--~G~~eiVk~LL~~~gadvn~n~~d 321 (1044)
..|+..|+.++ +++|++.|++++.. |..|+||||+|+. .++.++|++|++. |+++ +.+|
T Consensus 289 i~AA~~g~lei--------------VklLLe~GAdIN~k--D~~G~TPLH~Aaa~~~~~~eIVklLLe~-GADI--N~kD 349 (764)
T PHA02716 289 ITLARNIDISV--------------VYSFLQPGVKLHYK--DSAGRTCLHQYILRHNISTDIIKLLHEY-GNDL--NEPD 349 (764)
T ss_pred HHHHHcCCHHH--------------HHHHHhCCCceecc--CCCCCCHHHHHHHHhCCCchHHHHHHHc-CCCC--ccCC
Confidence 34677888777 99999999999876 9999999999875 4689999999999 9999 8999
Q ss_pred CCCchHHHHHHhcCCCc------ccccchHHHHHHHHhcCCeeeecCCCCCcHHHH----HHHcCCHHHHHHHHhcCCC-
Q 001613 322 ADGNSALHCALKTSMGL------SQHILQNRIVGILLKHGAIVSQQNKLGLTALHI----AAGSGNSQALEDLIRKEPD- 390 (1044)
Q Consensus 322 ~~G~TpLh~Aa~~g~~~------~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~----Aa~~g~~eiVklLL~~gad- 390 (1044)
..|+||||+|+...... .....+.+++++|+++|++++.+|..|+||||. |...++.+++++|++.++.
T Consensus 350 ~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~ 429 (764)
T PHA02716 350 NIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLN 429 (764)
T ss_pred CCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchh
Confidence 99999999987531000 001127899999999999999999999999994 2335788999999886531
Q ss_pred -----------------------------------------------------------CcccCCCCCCcHHHHHHHcCC
Q 001613 391 -----------------------------------------------------------CINLKTIMMETPLFFAVKNDH 411 (1044)
Q Consensus 391 -----------------------------------------------------------~in~~d~~G~TpLh~Aa~~g~ 411 (1044)
++|..|..|+||||+|+.+|+
T Consensus 430 ~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~ 509 (764)
T PHA02716 430 MVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHT 509 (764)
T ss_pred hhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCC
Confidence 134456678888888888776
Q ss_pred H-----HHHHHHHHCCCCcccccCCCCcHHHHHHHcChH
Q 001613 412 M-----VCAEVLLRWGANSEVLNLRRERPIDFAKSQDMR 445 (1044)
Q Consensus 412 ~-----~iVklLL~~GAdin~~d~~G~TpLh~Aa~~g~~ 445 (1044)
. +++++|+++|||+|.+|..|+||||+|+++|..
T Consensus 510 ~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~ 548 (764)
T PHA02716 510 NANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRL 548 (764)
T ss_pred ccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCc
Confidence 5 445888888888888888888888888887743
No 8
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-39 Score=377.48 Aligned_cols=311 Identities=23% Similarity=0.279 Sum_probs=271.5
Q ss_pred cccccchHHHHHHHcCCHHHHHHHHhCCCCCccccccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCch
Q 001613 53 QTAIVTKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLL 132 (1044)
Q Consensus 53 ~~~~~~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T~l 132 (1044)
.+..++|+||+|+.+...+.+++|++.| ++++..+. ++.+|||+|+..|+.++.++|+++|+|+|..|.+|.|
T Consensus 84 ~D~~~n~~l~~a~~~~~~~~i~~Lls~g----ad~~~~n~-~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~T-- 156 (929)
T KOG0510|consen 84 KDSADNTPLHAAVEYNQGDKIQVLLSYG----ADTPLRNL-NKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFT-- 156 (929)
T ss_pred hhcccCchhHHHhhcchHHHHHHHHhcC----CCCChhhh-hccCchhhccccchHHHHHHHHHhcCCccccccCCCc--
Confidence 3445589999999999999999999998 88999999 9999999999999999999999999999999999988
Q ss_pred HHHHHHhCCCcceecCCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHH
Q 001613 133 PLELSLSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILV 212 (1044)
Q Consensus 133 pLh~Aa~~g~~eIv~~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~ 212 (1044)
|||+|+.+++ .++.+.|++.|+++..
T Consensus 157 pLh~A~~~~~-----------------------~E~~k~Li~~~a~~~K------------------------------- 182 (929)
T KOG0510|consen 157 PLHLAARKNK-----------------------VEAKKELINKGADPCK------------------------------- 182 (929)
T ss_pred hhhHHHhcCh-----------------------HHHHHHHHhcCCCCCc-------------------------------
Confidence 8888877765 5568899999887753
Q ss_pred hccCCCcccccchhhHHHHHHHHhcCCchHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHH-----cCCCCCCccCCCC
Q 001613 213 LHDSDLGAKEKTTIYECVIREALALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQL-----FGAVANGSCTDKK 287 (1044)
Q Consensus 213 ~~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~-----~GAdin~~~~d~~ 287 (1044)
.+.+ |..++|.|+++|..+. +++.+. .+..+|.. +..
T Consensus 183 --------~~~~--------------~~~~iH~aa~s~s~e~--------------mEi~l~~~g~~r~~~in~~--~n~ 224 (929)
T KOG0510|consen 183 --------SDID--------------GNFPIHEAARSGSKEC--------------MEIFLPEHGYERQTHINFD--NNE 224 (929)
T ss_pred --------ccCc--------------CCchHHHHHHhcchhh--------------hhhhhccccchhhcccccc--cCC
Confidence 1222 8899999999999998 888887 66777765 889
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCC-------------CCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhc
Q 001613 288 VGPPLILATQAGDEDVIEILLKSKNIDIN-------------DADADADGNSALHCALKTSMGLSQHILQNRIVGILLKH 354 (1044)
Q Consensus 288 G~TpLh~Aa~~G~~eiVk~LL~~~gadvn-------------~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~ 354 (1044)
|.||||.|++.|++++++.+|+. |..+. +|..|++|.||||+|++.| +.+.|+.|+..
T Consensus 225 ~~~pLhlAve~g~~e~lk~~L~n-~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G--------~~~svd~Ll~~ 295 (929)
T KOG0510|consen 225 KATPLHLAVEGGDIEMLKMCLQN-GKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQG--------GPESVDNLLGF 295 (929)
T ss_pred CCcchhhhhhcCCHHHHHHHHhC-ccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcC--------ChhHHHHHHHc
Confidence 99999999999999999999998 55442 2567999999999999999 99999999999
Q ss_pred CCeeeecCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc---cccC
Q 001613 355 GAIVSQQNKLGLTALHIAAGSGNSQALEDLIR-KEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSE---VLNL 430 (1044)
Q Consensus 355 GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~-~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin---~~d~ 430 (1044)
|++++.+++++.||||.||.+|+.+.|+-||+ .+.-.+|..|..|.||||+|+++||.+++++||++||+.+ ..|.
T Consensus 296 Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~ 375 (929)
T KOG0510|consen 296 GASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADS 375 (929)
T ss_pred CCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhccccccc
Confidence 99999999999999999999999999999999 6666799999999999999999999999999999999987 3466
Q ss_pred CCCcHHHHHHHcChHHHHHHhhhcCccccccchhhhhhhhcCChhhhhhHHHhhhcccCCCCccccccCCceeeeecccc
Q 001613 431 RRERPIDFAKSQDMRFLLKAANTCHTNLAFLNQEKQNASLESDEDISGTCEALLSMVDDNSNTERICSGTKIEVCKYYES 510 (1044)
Q Consensus 431 ~G~TpLh~Aa~~g~~~Ll~~~~~n~~d~~~~~~~l~~A~~~~~~~i~~~~~~l~~~~d~~~~~~~~~~~~~~~t~L~~Aa 510 (1044)
+|.||||+|+.
T Consensus 376 dg~TaLH~Aa~--------------------------------------------------------------------- 386 (929)
T KOG0510|consen 376 DGNTALHLAAK--------------------------------------------------------------------- 386 (929)
T ss_pred CCchhhhHHHH---------------------------------------------------------------------
Confidence 66666666654
Q ss_pred cCcccccccccccccccccccCCCccccccc
Q 001613 511 HSGCIRGSKCFYALGEEQHRKMNPGMCMIHA 541 (1044)
Q Consensus 511 ~~G~~eivk~Ll~~GAd~~~~d~~G~tpLh~ 541 (1044)
.|+...|+.|+++||++...++.|+++++.
T Consensus 387 -~g~~~av~~Li~~Ga~I~~~n~~g~SA~~~ 416 (929)
T KOG0510|consen 387 -YGNTSAVQKLISHGADIGVKNKKGKSAFDT 416 (929)
T ss_pred -hccHHHHHHHHHcCCceeeccccccccccc
Confidence 456677888999999999999999999985
No 9
>PHA03095 ankyrin-like protein; Provisional
Probab=100.00 E-value=2.1e-38 Score=377.98 Aligned_cols=288 Identities=24% Similarity=0.269 Sum_probs=256.9
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCccccccccCCCCChHHHHHHHcC---CHHHHHHHHHcCCCCCcccCCCCCchHHHHHH
Q 001613 62 RVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAESH---TARCVELLLKKRARTDIRSKDGRRLLPLELSL 138 (1044)
Q Consensus 62 h~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~G---~~eiVklLL~~GAdvn~~d~~G~T~lpLh~Aa 138 (1044)
..|+..+++++|++|++.| +++|.++. .|.||||+|+..| +.++|++|+++|+|+|.++..|+| |||+|+
T Consensus 19 ~~~~~~~~~~~v~~Ll~~g----a~vn~~~~-~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~T--pLh~A~ 91 (471)
T PHA03095 19 LLNASNVTVEEVRRLLAAG----ADVNFRGE-YGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFT--PLHLYL 91 (471)
T ss_pred HHcCCCCCHHHHHHHHHcC----CCcccCCC-CCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCC--HHHHHH
Confidence 5677889999999999998 99999999 9999999999999 999999999999999999999998 888888
Q ss_pred hCCCcceecCCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHHhccCCC
Q 001613 139 SSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLHDSDL 218 (1044)
Q Consensus 139 ~~g~~eIv~~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~~~~adi 218 (1044)
..++ ..+++++|+++|++++.
T Consensus 92 ~~~~----------------------~~~iv~lLl~~ga~in~------------------------------------- 112 (471)
T PHA03095 92 YNAT----------------------TLDVIKLLIKAGADVNA------------------------------------- 112 (471)
T ss_pred HcCC----------------------cHHHHHHHHHcCCCCCC-------------------------------------
Confidence 7763 46789999999887653
Q ss_pred cccccchhhHHHHHHHHhcCCchHHHHHHH--cCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH
Q 001613 219 GAKEKTTIYECVIREALALGRATKLQRAVK--RNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILAT 296 (1044)
Q Consensus 219 n~~~~~~~~~~~i~~a~~~gg~t~L~~A~~--~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~Aa 296 (1044)
.+.. |.||||+|+. .++.++ +++|++.|++++.. |..|.||||+|+
T Consensus 113 --~~~~--------------g~tpLh~a~~~~~~~~~i--------------v~~Ll~~gad~~~~--d~~g~tpL~~a~ 160 (471)
T PHA03095 113 --KDKV--------------GRTPLHVYLSGFNINPKV--------------IRLLLRKGADVNAL--DLYGMTPLAVLL 160 (471)
T ss_pred --CCCC--------------CCCHHHHHhhCCcCCHHH--------------HHHHHHcCCCCCcc--CCCCCCHHHHHH
Confidence 2222 8999999994 345555 99999999999875 899999999999
Q ss_pred HcC--CHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHH
Q 001613 297 QAG--DEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAG 374 (1044)
Q Consensus 297 ~~G--~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~ 374 (1044)
..+ +.+++++|++. |+++ +..|..|.||||+|+.... ...+++++|+++|++++.+|..|+||||+|+.
T Consensus 161 ~~~~~~~~iv~~Ll~~-g~~~--~~~d~~g~t~Lh~~~~~~~------~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~ 231 (471)
T PHA03095 161 KSRNANVELLRLLIDA-GADV--YAVDDRFRSLLHHHLQSFK------PRARIVRELIRAGCDPAATDMLGNTPLHSMAT 231 (471)
T ss_pred HcCCCCHHHHHHHHHc-CCCC--cccCCCCCCHHHHHHHHCC------CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHh
Confidence 876 68999999999 9999 7779999999999998641 27899999999999999999999999999999
Q ss_pred cCCH--HHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHHHcChHHHHHHhh
Q 001613 375 SGNS--QALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLLKAAN 452 (1044)
Q Consensus 375 ~g~~--eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~Ll~~~~ 452 (1044)
.|+. .+++.|++.|++ +|.+|..|+||||+|+..|+.+++++|+++|||++.+|..|+||||+|+.+|+.++++.+-
T Consensus 232 ~~~~~~~~v~~ll~~g~d-in~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL 310 (471)
T PHA03095 232 GSSCKRSLVLPLLIAGIS-INARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAAL 310 (471)
T ss_pred cCCchHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 9975 688999999998 9999999999999999999999999999999999999999999999999999988888655
Q ss_pred hcCcc
Q 001613 453 TCHTN 457 (1044)
Q Consensus 453 ~n~~d 457 (1044)
....+
T Consensus 311 ~~~~~ 315 (471)
T PHA03095 311 AKNPS 315 (471)
T ss_pred HhCCC
Confidence 54444
No 10
>PHA02730 ankyrin-like protein; Provisional
Probab=100.00 E-value=1.7e-38 Score=378.96 Aligned_cols=390 Identities=13% Similarity=0.100 Sum_probs=281.7
Q ss_pred HHHHHHHHhCCCCCccccc-cccCCCCChHHHHHHHcC---CHHHHHHHHHcCCCCCcccCCCCCchHHHHHHhCC--Cc
Q 001613 70 VSCATSLVNGDLGPVALVN-EVEESSGMTALHLAAESH---TARCVELLLKKRARTDIRSKDGRRLLPLELSLSSS--RM 143 (1044)
Q Consensus 70 ~eivk~LL~~g~~~~adiN-~~d~~~G~TpLH~Aa~~G---~~eiVklLL~~GAdvn~~d~~G~T~lpLh~Aa~~g--~~ 143 (1044)
...+++.++.. +++| .+|. .|.||||+|+.+| +.++|++||++|||++.+|.+|+| |||+|+..+ +.
T Consensus 20 ~~~~~~~~~~~----~~in~~kd~-~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~T--PLh~Aa~~~~~~~ 92 (672)
T PHA02730 20 YKKIKLEIETC----HNLSKHIDR-RGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLT--PLGVYSKRKYVKS 92 (672)
T ss_pred HHHHHHHHHHh----cchhhhcCC-CCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCC--hHHHHHHcCCCcH
Confidence 44677777765 5788 8888 9999999999997 599999999999999999999999 999999977 67
Q ss_pred ceecC------------CCCCchhHHHHHHh--cCCHHHHHHHHH-cCCCcchHHHHhhhcCcHHHHHHHHHHHhh--hh
Q 001613 144 DVIWN------------PDEYSVEDLVVILG--QKNLTTVKLLSQ-KTKELDEVAYANAVGGRIVALAALLIVAAD--KV 206 (1044)
Q Consensus 144 eIv~~------------~~~~~~t~L~~Ai~--~g~~eivklLl~-~gadi~~~~~~~a~~g~~~~l~~ll~~a~~--~~ 206 (1044)
+|++. .+..+.++|+.++. .++.+++++|+. .+.+++...-.. ..+. .+..+...... ..
T Consensus 93 eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~-~~~~--~~~~~yl~~~~~~~e 169 (672)
T PHA02730 93 QIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYY-IHCL--GLVDIYVTTPNPRPE 169 (672)
T ss_pred HHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhh-cccc--chhhhhHhcCCCchH
Confidence 77741 23336778888777 899999999996 666765431100 0011 12222222222 23
Q ss_pred hhHHHHhccCCCcccccchhhHHHHHHHH-hcCCchHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCC
Q 001613 207 NESILVLHDSDLGAKEKTTIYECVIREAL-ALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTD 285 (1044)
Q Consensus 207 ~~~~l~~~~adin~~~~~~~~~~~i~~a~-~~gg~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d 285 (1044)
..++++.+|++++.-.-.. ... ...+.+.||+.+..+... .. -....+++|+++||++|.. |
T Consensus 170 IvklLi~~g~~v~g~~~~~-------~~~~~~~c~~~l~~~il~~~~~-~~-------n~~eiv~lLIs~GadIN~k--d 232 (672)
T PHA02730 170 VLLWLLKSECYSTGYVFRS-------CMYDSDRCKNSLHYYILSHRES-ES-------LSKDVIKCLIDNNVSIHGR--D 232 (672)
T ss_pred HHHHHHHcCCccccccccc-------ccccCCccchhHHHHHHhhhhh-hc-------cCHHHHHHHHHCCCCCCCC--C
Confidence 3567777888875210000 000 112445666555443221 01 1122399999999999986 9
Q ss_pred CCCCcHHHH--HHHcCCHHHHHHHHH--------------------------------cCCCCCCC--------------
Q 001613 286 KKVGPPLIL--ATQAGDEDVIEILLK--------------------------------SKNIDIND-------------- 317 (1044)
Q Consensus 286 ~~G~TpLh~--Aa~~G~~eiVk~LL~--------------------------------~~gadvn~-------------- 317 (1044)
..|.||||+ |...|+.++|++|++ . |+|+.+
T Consensus 233 ~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~~~~ 311 (672)
T PHA02730 233 EGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPY-NVDMEIVNLLIEGRHTLIDV 311 (672)
T ss_pred CCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccC-CcchHHHHHHhhccCcchhh
Confidence 999999995 555678999999999 5 777722
Q ss_pred ----CCCCCCCch---------------------HHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHH
Q 001613 318 ----ADADADGNS---------------------ALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIA 372 (1044)
Q Consensus 318 ----n~~d~~G~T---------------------pLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~A 372 (1044)
-..+..|.+ .||.-...+. ..+.+++++|+++||++|.. ..|+||||+|
T Consensus 312 ~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~-----~v~ieIvelLIs~GAdIN~k-~~G~TpLH~A 385 (672)
T PHA02730 312 MRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGD-----MVSIPILRCMLDNGATMDKT-TDNNYPLHDY 385 (672)
T ss_pred hhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCC-----cCcHHHHHHHHHCCCCCCcC-CCCCcHHHHH
Confidence 004556654 6677666551 12799999999999999986 7999999999
Q ss_pred HHcCC----HHHHHHHHhcCCC-CcccCCCCCCcHHHH---HHHcC---------CHHHHHHHHHCCCCcccccCCCCcH
Q 001613 373 AGSGN----SQALEDLIRKEPD-CINLKTIMMETPLFF---AVKND---------HMVCAEVLLRWGANSEVLNLRRERP 435 (1044)
Q Consensus 373 a~~g~----~eiVklLL~~gad-~in~~d~~G~TpLh~---Aa~~g---------~~~iVklLL~~GAdin~~d~~G~Tp 435 (1044)
+..++ .+++++||++|++ ++|.+|..|.||||. |...+ ..+++++|+.+|||+|.+|..|+||
T Consensus 386 a~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TP 465 (672)
T PHA02730 386 FVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTL 465 (672)
T ss_pred HHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCH
Confidence 98875 8999999999983 499999999999994 33332 2367999999999999999999999
Q ss_pred HHHHHHcChHHHHHHhhhcCccccccchhhhhhhhcCChhhhhhHHHhhhcccCCCCccccccC-Cceeeeeccccc--C
Q 001613 436 IDFAKSQDMRFLLKAANTCHTNLAFLNQEKQNASLESDEDISGTCEALLSMVDDNSNTERICSG-TKIEVCKYYESH--S 512 (1044)
Q Consensus 436 Lh~Aa~~g~~~Ll~~~~~n~~d~~~~~~~l~~A~~~~~~~i~~~~~~l~~~~d~~~~~~~~~~~-~~~~t~L~~Aa~--~ 512 (1044)
||+|+..+..++++.+-....+.+ ..+ ..+.||||+|+. .
T Consensus 466 Lh~Aa~~~~~eive~LI~~GAdIN-------------------------------------~~d~~~g~TaL~~Aa~~~~ 508 (672)
T PHA02730 466 LYYAVDVNNIQFARRLLEYGASVN-------------------------------------TTSRSIINTAIQKSSYRRE 508 (672)
T ss_pred HHHHHHhCCHHHHHHHHHCCCCCC-------------------------------------CCCCcCCcCHHHHHHHhhc
Confidence 999999997777764443333311 111 136789999987 4
Q ss_pred cccccccccccccccccc
Q 001613 513 GCIRGSKCFYALGEEQHR 530 (1044)
Q Consensus 513 G~~eivk~Ll~~GAd~~~ 530 (1044)
|+.+++++|+++|+++..
T Consensus 509 ~~~eIv~~LLs~ga~i~~ 526 (672)
T PHA02730 509 NKTKLVDLLLSYHPTLET 526 (672)
T ss_pred CcHHHHHHHHHcCCCHHH
Confidence 899999999999998753
No 11
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=100.00 E-value=5.9e-38 Score=380.94 Aligned_cols=353 Identities=13% Similarity=0.068 Sum_probs=260.8
Q ss_pred HcCCHHHHHHHHhCCCCCccccccc-cCCCCChHHHHHHH--cCCHHHHHHHHHcCCCCCcccCCCCCchHHHHHHhCCC
Q 001613 66 IFDSVSCATSLVNGDLGPVALVNEV-EESSGMTALHLAAE--SHTARCVELLLKKRARTDIRSKDGRRLLPLELSLSSSR 142 (1044)
Q Consensus 66 ~~G~~eivk~LL~~g~~~~adiN~~-d~~~G~TpLH~Aa~--~G~~eiVklLL~~GAdvn~~d~~G~T~lpLh~Aa~~g~ 142 (1044)
..+++++|++|++.| .+++|.+ |. .|.||||+|+. +++.++|++|+++|+|+|.+|.+|.| |||+|+..|+
T Consensus 151 ~~v~leiVk~LLe~G---~ADIN~~~d~-~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~T--PLH~Aa~~g~ 224 (764)
T PHA02716 151 RGIDLDLIKYMVDVG---IVNLNYVCKK-TGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLIT--PLHTYLITGN 224 (764)
T ss_pred cCCCHHHHHHHHHCC---CCCcccccCC-CCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCC--HHHHHHHcCC
Confidence 458999999999986 4789998 77 99999999875 46799999999999999999999999 9999988775
Q ss_pred cceecCCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHHhccCCCcccc
Q 001613 143 MDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLHDSDLGAKE 222 (1044)
Q Consensus 143 ~eIv~~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~~~~adin~~~ 222 (1044)
. +.++|++|+++|++++. ++
T Consensus 225 ~---------------------~~eIVklLLe~GADVN~---------------------------------------kD 244 (764)
T PHA02716 225 V---------------------CASVIKKIIELGGDMDM---------------------------------------KC 244 (764)
T ss_pred C---------------------CHHHHHHHHHcCCCCCC---------------------------------------CC
Confidence 2 24789999999987753 23
Q ss_pred cchhhHHHHHHHHhcCCchHHHHHHH---cCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHH---HHH
Q 001613 223 KTTIYECVIREALALGRATKLQRAVK---RNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLI---LAT 296 (1044)
Q Consensus 223 ~~~~~~~~i~~a~~~gg~t~L~~A~~---~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh---~Aa 296 (1044)
.. |.||||+|+. .++.++ +++|++.+..... ....++|+ .|+
T Consensus 245 ~~--------------G~TPLh~Ai~~a~n~~~EI--------------vkiLie~~d~n~~----~~~~~~L~~~i~AA 292 (764)
T PHA02716 245 VN--------------GMSPIMTYIINIDNINPEI--------------TNIYIESLDGNKV----KNIPMILHSYITLA 292 (764)
T ss_pred CC--------------CCCHHHHHHHhhhccCHHH--------------HHHHHHhcccccc----ccchhhhHHHHHHH
Confidence 33 9999998864 445555 7788776433221 11223344 478
Q ss_pred HcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHH--
Q 001613 297 QAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAG-- 374 (1044)
Q Consensus 297 ~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~-- 374 (1044)
..|+.++|++||+. |+++ +.+|..|+||||+|+..+. .+.+++++|+++|+++|.+|..|+||||+|+.
T Consensus 293 ~~g~leiVklLLe~-GAdI--N~kD~~G~TPLH~Aaa~~~------~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~l 363 (764)
T PHA02716 293 RNIDISVVYSFLQP-GVKL--HYKDSAGRTCLHQYILRHN------ISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSML 363 (764)
T ss_pred HcCCHHHHHHHHhC-CCce--eccCCCCCCHHHHHHHHhC------CCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhh
Confidence 99999999999999 9999 8999999999999875431 17899999999999999999999999999875
Q ss_pred ------------cCCHHHHHHHHhcCCCCcccCCCCCCcHHHH----HHHcCCHHHHHHHHHCCCCcccccC--------
Q 001613 375 ------------SGNSQALEDLIRKEPDCINLKTIMMETPLFF----AVKNDHMVCAEVLLRWGANSEVLNL-------- 430 (1044)
Q Consensus 375 ------------~g~~eiVklLL~~gad~in~~d~~G~TpLh~----Aa~~g~~~iVklLL~~GAdin~~d~-------- 430 (1044)
.++.++|++|+++|++ ++.+|..|+||||. |...++.+++++|++.|+..+..+.
T Consensus 364 av~~~ld~~~~~~~~~eVVklLL~~GAD-In~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~ 442 (764)
T PHA02716 364 SVVNILDPETDNDIRLDVIQCLISLGAD-ITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIR 442 (764)
T ss_pred hhhccccccccccChHHHHHHHHHCCCC-CCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhc
Confidence 3789999999999999 99999999999993 3346789999999999886544322
Q ss_pred CCCcH--HHHHHHcChHHHHHHhhhcCccccccchhhhhhhhcCChhhhhhHHHhhhcccCCCCccccccCCceeeeecc
Q 001613 431 RRERP--IDFAKSQDMRFLLKAANTCHTNLAFLNQEKQNASLESDEDISGTCEALLSMVDDNSNTERICSGTKIEVCKYY 508 (1044)
Q Consensus 431 ~G~Tp--Lh~Aa~~g~~~Ll~~~~~n~~d~~~~~~~l~~A~~~~~~~i~~~~~~l~~~~d~~~~~~~~~~~~~~~t~L~~ 508 (1044)
.+.+| +|.++..+...+.........-... ...++... ..+... +....+..|.||||+
T Consensus 443 ~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~-----------~~~~v~~~--~ii~~~------nvN~~D~~G~TPLh~ 503 (764)
T PHA02716 443 VDDTPCIIHHIIAKYNIPTDLYTDEYEPYDST-----------KIHDVYHC--AIIERY------NNAVCETSGMTPLHV 503 (764)
T ss_pred cCcchhhHHHHHHhcCcchhhhhhhhhhcccc-----------ccchhhHH--HHHhhc------cccccCCCCCCHHHH
Confidence 23333 4444444322221111110000000 00000000 000011 122234678899999
Q ss_pred cccCcccccc-----cccccccccccccCCCccccccccccc
Q 001613 509 ESHSGCIRGS-----KCFYALGEEQHRKMNPGMCMIHASTQE 545 (1044)
Q Consensus 509 Aa~~G~~eiv-----k~Ll~~GAd~~~~d~~G~tpLh~aa~~ 545 (1044)
|+..|+.+++ ++|++.|||++.+++.|.||+|++...
T Consensus 504 Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~ 545 (764)
T PHA02716 504 SIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRN 545 (764)
T ss_pred HHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHc
Confidence 9999988666 999999999999999999999999843
No 12
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=2.7e-39 Score=397.83 Aligned_cols=502 Identities=19% Similarity=0.204 Sum_probs=316.3
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHhhccccccccccccccccchHHHHHHHcCCHHHHHHHHhCCCCCccccccccCCCCCh
Q 001613 18 ETTLIINSLLEDDKKQLINVSKRHFIDNSLDNADQQTAIVTKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMT 97 (1044)
Q Consensus 18 e~~~ll~AIl~dD~~~L~~li~~~~~~~~l~~~~~~~~~~~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~T 97 (1044)
.+++++.+.-.+..+....++.+... .+-....+.||||.|+..|+.++++.|+..| +.++.++. .|.|
T Consensus 54 ~~~pl~~aa~~~~~~v~~~ll~~~a~------v~~~~~~~~~plh~a~~~~~a~~v~~ll~~g----a~~~~~~~-~~lT 122 (1143)
T KOG4177|consen 54 GFTPLHIAAHYGNENVAELLLNRGAI------VNATARNGITPLHVASKRGDAEMVKLLLCRG----AQIDARDR-DGLT 122 (1143)
T ss_pred ccCHHHHHhhhhhhhhhhhhhccccc------cCcccccCccHHHHHHhhcchhHHHHHHhcc----Cchhhccc-CCCc
Confidence 34455555544444444334433322 1112234466677777777777777777776 66777777 7777
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCchHHHHHHh-----------------------CCCcceec-------
Q 001613 98 ALHLAAESHTARCVELLLKKRARTDIRSKDGRRLLPLELSLS-----------------------SSRMDVIW------- 147 (1044)
Q Consensus 98 pLH~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T~lpLh~Aa~-----------------------~g~~eIv~------- 147 (1044)
|||.|+..|+.+++++|+.+|++++++|++|.| |+++|+. .++.+++.
T Consensus 123 pLh~aa~~g~~~~~~~ll~~~a~~~~k~~~g~t--~l~~a~~~~~~~ll~~~~~~d~l~~~~~~~~~~~~~~~ll~~~~~ 200 (1143)
T KOG4177|consen 123 PLHCAARKGHVQVIELLLQHGAPINIKTKNGLS--PLHMAAQVACARLLLEYKAPDYLRLHVAAHCGHARVAKLLLDKKA 200 (1143)
T ss_pred chhhhcccccHHHHHHHHHccCCCcccccCCCC--chhhhcchhhhHHhhhcccchhhhhhHHhhcchHHHHhhhhcccC
Confidence 777777777777777777777777777777766 4444433 11111110
Q ss_pred ---CCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhh--hhhhHHHHhccCCCcccc
Q 001613 148 ---NPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAAD--KVNESILVLHDSDLGAKE 222 (1044)
Q Consensus 148 ---~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~--~~~~~~l~~~~adin~~~ 222 (1044)
.....+.++++.|+..+.+.++++++.+|+++... ....+..+..++.. .....+++.+++.++..+
T Consensus 201 ~~~a~~~~~~tpl~~a~~~nri~~~eLll~~gadv~a~--------d~~gl~~lh~a~~~g~~~i~~~l~~~ga~~~~~~ 272 (1143)
T KOG4177|consen 201 DPNASALNGFTPLHIACKKNRIKVVELLLKHGADVSAK--------DESGLTPLHVAAFMGHLDIVKLLLQHGASVNVST 272 (1143)
T ss_pred CccccccCCCCchhhhccccccceeeeeeeccCcCCcc--------cccCccHHHHHHhccchhHHHHHHhcccccCccc
Confidence 11223667777788877888888888887777532 11223333333222 223455666677777776
Q ss_pred cchhhHHHHHHHHhcCCchHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHH
Q 001613 223 KTTIYECVIREALALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQAGDED 302 (1044)
Q Consensus 223 ~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~Aa~~G~~e 302 (1044)
.+ +.||+|.|+..+..+. .++|++.|+++... +....||+|+|...|+.+
T Consensus 273 vr--------------~~tplh~AA~~~~~e~--------------~~~ll~~ga~~~~~--~~~~kt~l~~a~~~g~~~ 322 (1143)
T KOG4177|consen 273 VR--------------GETPLHMAARAGQVEV--------------CKLLLQNGADVLAK--ARDDQTPLHIASRLGHEE 322 (1143)
T ss_pred cc--------------ccCcchhhhccchhhh--------------HhhhhccCcccccc--cccccChhhhhcccchHH
Confidence 66 7777777777777777 66777777776654 556666777776666666
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCc-------------------------ccccchHHHHHHHHhcCCe
Q 001613 303 VIEILLKSKNIDINDADADADGNSALHCALKTSMGL-------------------------SQHILQNRIVGILLKHGAI 357 (1044)
Q Consensus 303 iVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~-------------------------~~~~~~~~iVklLLe~GAd 357 (1044)
+++++++. ++.+ +..+..|.||||+++..+... +...+..+++++|+.+|++
T Consensus 323 i~~~~l~~-~~~~--~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~ 399 (1143)
T KOG4177|consen 323 IVHLLLQA-GATP--NAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGAD 399 (1143)
T ss_pred HHHHHhhc-cCCc--cccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhhccCC
Confidence 66666666 6666 556666666666666555110 1112267777777777777
Q ss_pred eeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcC-CHHHHHHHHHCCCCcccccCCCCcHH
Q 001613 358 VSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKND-HMVCAEVLLRWGANSEVLNLRRERPI 436 (1044)
Q Consensus 358 vn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g-~~~iVklLL~~GAdin~~d~~G~TpL 436 (1044)
+|..++.|.||||.|+.+++..+|+++++++++ .|..+..|.||+|+|+..| +.+++..+++.|+++|..-..|.|||
T Consensus 400 ~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~-~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~L 478 (1143)
T KOG4177|consen 400 PNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGAS-PNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPL 478 (1143)
T ss_pred cccCCCCCcceeeehhhccCcceEEEEeccCCC-hhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcch
Confidence 777777777777777777777777777777777 7777777777788777777 77777777777777777777777888
Q ss_pred HHHHHcChHHHHHHhhhc----CccccccchhhhhhhhcCChhhhhhHHHhhhcccCCCCccccccCCceeeeecccccC
Q 001613 437 DFAKSQDMRFLLKAANTC----HTNLAFLNQEKQNASLESDEDISGTCEALLSMVDDNSNTERICSGTKIEVCKYYESHS 512 (1044)
Q Consensus 437 h~Aa~~g~~~Ll~~~~~n----~~d~~~~~~~l~~A~~~~~~~i~~~~~~l~~~~d~~~~~~~~~~~~~~~t~L~~Aa~~ 512 (1044)
|+|+..|+.+++..+... ..+...+.+.++.++..+...+... .++.+.+. ....+.+.||||+|+..
T Consensus 479 hlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~------l~~~ga~v--~~~~~r~~TpLh~A~~~ 550 (1143)
T KOG4177|consen 479 HLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKI------LLEHGANV--DLRTGRGYTPLHVAVHY 550 (1143)
T ss_pred hhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHH------HhhcCCce--ehhcccccchHHHHHhc
Confidence 888777766655522221 2222334555566655555444332 12222222 22356677999999999
Q ss_pred cccccccccccccccccccCCCccccccccccccccceec----cCCcccccCCCCCC---ccccCCCCcceEEEeee
Q 001613 513 GCIRGSKCFYALGEEQHRKMNPGMCMIHASTQEFKSKIFV----GGLPFFLDSDSLGG---YFEKHFGPIEDARVAEF 583 (1044)
Q Consensus 513 G~~eivk~Ll~~GAd~~~~d~~G~tpLh~aa~~~~~kifV----g~L~~~~te~~Lr~---~F~~~fG~v~~~~v~~d 583 (1044)
|++++||+|+++|||++.+++.|+||+|.++......|+. .|...++.+.+... .+.. +|.+..++.+.+
T Consensus 551 g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~-lg~~~~~k~l~~ 627 (1143)
T KOG4177|consen 551 GNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVR-LGYLSVVKLLKV 627 (1143)
T ss_pred CCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHH-hcccchhhHHHh
Confidence 9999999999999999999999999999998544444332 33333333322211 2233 566666655443
No 13
>PHA02878 ankyrin repeat protein; Provisional
Probab=100.00 E-value=2.1e-37 Score=370.26 Aligned_cols=306 Identities=22% Similarity=0.253 Sum_probs=247.1
Q ss_pred HHHHHHHhcCHHHHHHHHHhhccccccccccccccccchHHHHHHHcCCHHHHHHHHhCCCCCccccccccCCCCChHHH
Q 001613 21 LIINSLLEDDKKQLINVSKRHFIDNSLDNADQQTAIVTKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALH 100 (1044)
Q Consensus 21 ~ll~AIl~dD~~~L~~li~~~~~~~~l~~~~~~~~~~~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH 100 (1044)
.+.+++..++.+.+.+.+.......... ......+.||||+||..|+.++|++|++.| +++|.+|. .|+||||
T Consensus 3 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~--~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~g----advn~~d~-~g~TpLh 75 (477)
T PHA02878 3 KLYKSMYTDNYETILKYIEYIDHTENYS--TSASLIPFIPLHQAVEARNLDVVKSLLTRG----HNVNQPDH-RDLTPLH 75 (477)
T ss_pred hHHHHHHhccHHHHHHHHHHHhhhhhhc--CcccccCcchHHHHHHcCCHHHHHHHHHCC----CCCCCCCC-CCCCHHH
Confidence 5677888888887777776532222111 122345689999999999999999999998 89999999 9999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCcccCCCCCchHHHHHHhCCCcceecCCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcc
Q 001613 101 LAAESHTARCVELLLKKRARTDIRSKDGRRLLPLELSLSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELD 180 (1044)
Q Consensus 101 ~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T~lpLh~Aa~~g~~eIv~~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~ 180 (1044)
+||..|+.++|++|++.+++.+. ..+ .++++.|+..++.+++++|+..+.+..
T Consensus 76 ~A~~~g~~~~v~~Ll~~~~~~~~--~~~-------------------------~~~l~~a~~~~~~ei~~~Ll~~~~~~~ 128 (477)
T PHA02878 76 IICKEPNKLGMKEMIRSINKCSV--FYT-------------------------LVAIKDAFNNRNVEIFKIILTNRYKNI 128 (477)
T ss_pred HHHHCccHhHHHHHHHHHhcccc--ccc-------------------------hhhHHHHHHcCCHHHHHHHHhCcccCc
Confidence 99999999999999998765443 222 234445555667888999997754322
Q ss_pred hHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHHhccCCCcccccchhhHHHHHHHHhcCCchHHHHHHHcCCCCCcchhHH
Q 001613 181 EVAYANAVGGRIVALAALLIVAADKVNESILVLHDSDLGAKEKTTIYECVIREALALGRATKLQRAVKRNSTPTTSQSAE 260 (1044)
Q Consensus 181 ~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~~~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~ 260 (1044)
... . ...+ .. . . ..+..
T Consensus 129 ~~~-------~---~~~~---------------~~-----~-----------------~--------~~~~~-------- 145 (477)
T PHA02878 129 QTI-------D---LVYI---------------DK-----K-----------------S--------KDDII-------- 145 (477)
T ss_pred ccC-------c---HHHH---------------hh-----c-----------------c--------chhhH--------
Confidence 100 0 0000 00 0 0 00000
Q ss_pred HHHhhHHHHHHHHHcCCCCCCccCCCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcc
Q 001613 261 KRKLLLLEIELLQLFGAVANGSCTDKK-VGPPLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLS 339 (1044)
Q Consensus 261 ~~~~l~~~velLl~~GAdin~~~~d~~-G~TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~ 339 (1044)
....+++|+++|++++.. +.. |.||||+|+..|+.++|++|++. |+++ +..|..|.||||+|+..+
T Consensus 146 ----~~~iv~~Ll~~gadin~~--~~~~g~tpLh~A~~~~~~~iv~~Ll~~-gad~--n~~d~~g~tpLh~A~~~~---- 212 (477)
T PHA02878 146 ----EAEITKLLLSYGADINMK--DRHKGNTALHYATENKDQRLTELLLSY-GANV--NIPDKTNNSPLHHAVKHY---- 212 (477)
T ss_pred ----HHHHHHHHHHcCCCCCcc--CCCCCCCHHHHHHhCCCHHHHHHHHHC-CCCC--CCcCCCCCCHHHHHHHhC----
Confidence 001299999999999976 777 99999999999999999999999 9999 899999999999999999
Q ss_pred cccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHc-CCHHHHHHHHhcCCCCcccCCC-CCCcHHHHHHHcCCHHHHHH
Q 001613 340 QHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGS-GNSQALEDLIRKEPDCINLKTI-MMETPLFFAVKNDHMVCAEV 417 (1044)
Q Consensus 340 ~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~-g~~eiVklLL~~gad~in~~d~-~G~TpLh~Aa~~g~~~iVkl 417 (1044)
+.+++++|+++|++++.+|..|+||||+|+.. ++.+++++|+++|++ +|.++. .|.||||+| .++.+++++
T Consensus 213 ----~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gad-vn~~~~~~g~TpLh~A--~~~~~~v~~ 285 (477)
T PHA02878 213 ----NKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVD-VNAKSYILGLTALHSS--IKSERKLKL 285 (477)
T ss_pred ----CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCC-CCccCCCCCCCHHHHH--ccCHHHHHH
Confidence 99999999999999999999999999999976 799999999999999 999886 799999999 578899999
Q ss_pred HHHCCCCcccccCCCCcHHHHHHHcC
Q 001613 418 LLRWGANSEVLNLRRERPIDFAKSQD 443 (1044)
Q Consensus 418 LL~~GAdin~~d~~G~TpLh~Aa~~g 443 (1044)
|+++|||+|.+|..|.||||+|+..+
T Consensus 286 Ll~~gadin~~d~~g~TpL~~A~~~~ 311 (477)
T PHA02878 286 LLEYGADINSLNSYKLTPLSSAVKQY 311 (477)
T ss_pred HHHCCCCCCCcCCCCCCHHHHHHHHc
Confidence 99999999999999999999999864
No 14
>PHA02917 ankyrin-like protein; Provisional
Probab=100.00 E-value=6.7e-38 Score=382.98 Aligned_cols=413 Identities=13% Similarity=0.020 Sum_probs=252.1
Q ss_pred ccccchHHHHHHHc---CCHHHHHHHHhCCCCCccccccccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCcccC
Q 001613 54 TAIVTKLLRVSCIF---DSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAESHTA----RCVELLLKKRARTDIRSK 126 (1044)
Q Consensus 54 ~~~~~T~Lh~AA~~---G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~G~~----eiVklLL~~GAdvn~~d~ 126 (1044)
+..+.||||+||.. |+.++|++||+.| ++++.++. .|+||||+|+..|+. +++++|++++..+|..+.
T Consensus 29 d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~g----a~v~~~~~-~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~ 103 (661)
T PHA02917 29 NQFKNNALHAYLFNEHCNNVEVVKLLLDSG----TNPLHKNW-RQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDF 103 (661)
T ss_pred CCCCCcHHHHHHHhhhcCcHHHHHHHHHCC----CCccccCC-CCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCc
Confidence 44556666666555 5566666666665 56666666 666666666666653 344556555433333221
Q ss_pred CCCCchHHHHHHhCCCcceecCCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHH----H
Q 001613 127 DGRRLLPLELSLSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIV----A 202 (1044)
Q Consensus 127 ~G~T~lpLh~Aa~~g~~eIv~~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~----a 202 (1044)
. +++++|+ ..++.++|++|+++|++++... ..|. +.+... .
T Consensus 104 ~----~~~~~a~-----------------------~~~~~e~vk~Ll~~Gadin~~d----~~g~----T~L~~~~a~~~ 148 (661)
T PHA02917 104 N----IFSYMKS-----------------------KNVDVDLIKVLVEHGFDLSVKC----ENHR----SVIENYVMTDD 148 (661)
T ss_pred c----hHHHHHh-----------------------hcCCHHHHHHHHHcCCCCCccC----CCCc----cHHHHHHHccC
Confidence 1 1344444 4445555666666666555310 0111 112111 1
Q ss_pred hhhhhhHHHHhccCCCcccccchhhHHHHHHHHhcCCchHHHHHHHc-----------CCCCCcchhHHHHHhhHHHHHH
Q 001613 203 ADKVNESILVLHDSDLGAKEKTTIYECVIREALALGRATKLQRAVKR-----------NSTPTTSQSAEKRKLLLLEIEL 271 (1044)
Q Consensus 203 ~~~~~~~~l~~~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~-----------g~~~~~~~~~~~~~~l~~~vel 271 (1044)
+.....++|+.+|++++.++....+...........+.||||+|+.. ++.++ +++
T Consensus 149 ~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~ei--------------v~~ 214 (661)
T PHA02917 149 PVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEV--------------VKC 214 (661)
T ss_pred CCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHH--------------HHH
Confidence 12223445555555555433210000000000111257999999862 34444 999
Q ss_pred HHHcCCCCCCccCCCCCCcHHHHHHHcCCH--HHHHHHHHcCCCCCCC--CCCCCCCchHHHHHHhcCCCcc-cccchHH
Q 001613 272 LQLFGAVANGSCTDKKVGPPLILATQAGDE--DVIEILLKSKNIDIND--ADADADGNSALHCALKTSMGLS-QHILQNR 346 (1044)
Q Consensus 272 Ll~~GAdin~~~~d~~G~TpLh~Aa~~G~~--eiVk~LL~~~gadvn~--n~~d~~G~TpLh~Aa~~g~~~~-~~~~~~~ 346 (1044)
|+++|+++|.. |..|.||||+|+..|+. ++|++|++ |++++. ...|..|.||+|+|+.-+.... ....+.+
T Consensus 215 Li~~Gadvn~~--d~~G~TpLh~A~~~g~~~~eivk~Li~--g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~ 290 (661)
T PHA02917 215 LINHGIKPSSI--DKNYCTALQYYIKSSHIDIDIVKLLMK--GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLD 290 (661)
T ss_pred HHHCCCCcccC--CCCCCcHHHHHHHcCCCcHHHHHHHHh--CCcccccccccCcccccchHHHHHHHhhccccccchHH
Confidence 99999999986 99999999999999985 79999975 887721 1356778899999984221000 0022789
Q ss_pred HHHHHHhcCCeeee-------cC------------CCCCcHHHHHH---HcCC--HHHHHHHHhcCCCCcccCCCCCCcH
Q 001613 347 IVGILLKHGAIVSQ-------QN------------KLGLTALHIAA---GSGN--SQALEDLIRKEPDCINLKTIMMETP 402 (1044)
Q Consensus 347 iVklLLe~GAdvn~-------~d------------~~G~TpLh~Aa---~~g~--~eiVklLL~~gad~in~~d~~G~Tp 402 (1044)
+|++|+++|++... .+ ..+.++||.+. ..|. .++|++||++|++ +|.++.+|.|+
T Consensus 291 iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAd-vn~~~~~g~~~ 369 (661)
T PHA02917 291 LVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAV-VNKEAIHGYFR 369 (661)
T ss_pred HHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCC-CCCCCccccch
Confidence 99999999987421 11 23445555433 4665 5699999999999 99999999986
Q ss_pred HHHHHHcCCHHHHHHHHH-CCCCcccccCCCCcHHHHHHHcChHHHHHHhhhcCccccccchhhhhhhhcCChhhhhhHH
Q 001613 403 LFFAVKNDHMVCAEVLLR-WGANSEVLNLRRERPIDFAKSQDMRFLLKAANTCHTNLAFLNQEKQNASLESDEDISGTCE 481 (1044)
Q Consensus 403 Lh~Aa~~g~~~iVklLL~-~GAdin~~d~~G~TpLh~Aa~~g~~~Ll~~~~~n~~d~~~~~~~l~~A~~~~~~~i~~~~~ 481 (1044)
. .+.+.+++++||. .||+++.++..|+||||.|++.+...+--. ..+. ..+......+ .+..+++ .
T Consensus 370 ~----~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~---~~~~-~~~~~~~~~~--~~~~~~v---~ 436 (661)
T PHA02917 370 N----INIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFY---TYTY-KKGLCDMSYA--CPILSTI---N 436 (661)
T ss_pred h----hcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhh---hhhh-hhccchhhhh--hhhHHHH---H
Confidence 4 3667888888887 699988888889999999987653211100 0000 0000000000 1112222 2
Q ss_pred HhhhcccCCCCccccccCCceeeeecccccCcccccccccccccccccccCCCccccccccc
Q 001613 482 ALLSMVDDNSNTERICSGTKIEVCKYYESHSGCIRGSKCFYALGEEQHRKMNPGMCMIHAST 543 (1044)
Q Consensus 482 ~l~~~~d~~~~~~~~~~~~~~~t~L~~Aa~~G~~eivk~Ll~~GAd~~~~d~~G~tpLh~aa 543 (1044)
.++. .+.. ....+..+.||||+|+..++.+++++|+++|+|++..+..|.||+|.+.
T Consensus 437 ~Ll~----~GAd-IN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~ 493 (661)
T PHA02917 437 ICLP----YLKD-INMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAI 493 (661)
T ss_pred HHHH----CCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHH
Confidence 2222 2211 1223566789999999999999999999999999999999999999987
No 15
>PHA02874 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=359.19 Aligned_cols=328 Identities=18% Similarity=0.161 Sum_probs=271.3
Q ss_pred HHHHHHHhcCHHHHHHHHHhhccccccccccccccccchHHHHHHHcCCHHHHHHHHhCCCCCccccccccCCCCChHHH
Q 001613 21 LIINSLLEDDKKQLINVSKRHFIDNSLDNADQQTAIVTKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALH 100 (1044)
Q Consensus 21 ~ll~AIl~dD~~~L~~li~~~~~~~~l~~~~~~~~~~~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH 100 (1044)
.+..|+..+|++.+..++...... .+.....+.||||+|+..|+.++|++|++.| +++|..+. .|.||||
T Consensus 4 ~l~~ai~~gd~~~v~~ll~~~~~~-----~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~G----a~~n~~~~-~~~t~L~ 73 (434)
T PHA02874 4 DLRMCIYSGDIEAIEKIIKNKGNC-----INISVDETTTPLIDAIRSGDAKIVELFIKHG----ADINHINT-KIPHPLL 73 (434)
T ss_pred HHHHHHhcCCHHHHHHHHHcCCCC-----CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCCCCC-CCCCHHH
Confidence 567899999999998888754332 1223456789999999999999999999998 89999999 9999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCcccCCCCCchHHHHHHhCCCcceecCCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcc
Q 001613 101 LAAESHTARCVELLLKKRARTDIRSKDGRRLLPLELSLSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELD 180 (1044)
Q Consensus 101 ~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T~lpLh~Aa~~g~~eIv~~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~ 180 (1044)
+|+..|+.++|++|+++|++++.........-.+.+....| .+ +...+..+.|+||.|+..|+.+++++|+++|++++
T Consensus 74 ~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g-~d-~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n 151 (434)
T PHA02874 74 TAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCG-ID-VNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVN 151 (434)
T ss_pred HHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCc-CC-CCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCC
Confidence 99999999999999999998764332222211222222222 11 12345568889999999999999999999887764
Q ss_pred hHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHHhccCCCcccccchhhHHHHHHHHhcCCchHHHHHHHcCCCCCcchhHH
Q 001613 181 EVAYANAVGGRIVALAALLIVAADKVNESILVLHDSDLGAKEKTTIYECVIREALALGRATKLQRAVKRNSTPTTSQSAE 260 (1044)
Q Consensus 181 ~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~~~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~ 260 (1044)
. .+.. |.||||+|+..++.++
T Consensus 152 ~---------------------------------------~d~~--------------g~tpLh~A~~~~~~~i------ 172 (434)
T PHA02874 152 I---------------------------------------EDDN--------------GCYPIHIAIKHNFFDI------ 172 (434)
T ss_pred C---------------------------------------cCCC--------------CCCHHHHHHHCCcHHH------
Confidence 2 2222 8999999999999888
Q ss_pred HHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCccc
Q 001613 261 KRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQ 340 (1044)
Q Consensus 261 ~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~ 340 (1044)
+++|++.|++++.. +..|.||||+|+..|+.++|++|++. |+++ +..+..|.||||+|+..+
T Consensus 173 --------v~~Ll~~g~~~n~~--~~~g~tpL~~A~~~g~~~iv~~Ll~~-g~~i--~~~~~~g~TpL~~A~~~~----- 234 (434)
T PHA02874 173 --------IKLLLEKGAYANVK--DNNGESPLHNAAEYGDYACIKLLIDH-GNHI--MNKCKNGFTPLHNAIIHN----- 234 (434)
T ss_pred --------HHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhC-CCCC--cCCCCCCCCHHHHHHHCC-----
Confidence 99999999999876 89999999999999999999999999 9999 889999999999999876
Q ss_pred ccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcC-CHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcC-CHHHHHHH
Q 001613 341 HILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSG-NSQALEDLIRKEPDCINLKTIMMETPLFFAVKND-HMVCAEVL 418 (1044)
Q Consensus 341 ~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g-~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g-~~~iVklL 418 (1044)
. +++++|+ .|++++.+|..|+||||+|+..+ +.+++++|+++|++ +|.+|..|.||||+|++++ ..++++.|
T Consensus 235 ---~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad-~n~~d~~g~TpL~~A~~~~~~~~~ik~l 308 (434)
T PHA02874 235 ---R-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKAD-ISIKDNKGENPIDTAFKYINKDPVIKDI 308 (434)
T ss_pred ---h-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHhCCccHHHHHH
Confidence 3 5667776 68999999999999999999876 78999999999999 9999999999999999987 78899999
Q ss_pred HHCCCCcccccCCC-CcHHHHHHHcC
Q 001613 419 LRWGANSEVLNLRR-ERPIDFAKSQD 443 (1044)
Q Consensus 419 L~~GAdin~~d~~G-~TpLh~Aa~~g 443 (1044)
+..++.++..+..+ .+++..+...+
T Consensus 309 l~~~~~~~~~~~~~~~~~~~~~~i~~ 334 (434)
T PHA02874 309 IANAVLIKEADKLKDSDFLEHIEIKD 334 (434)
T ss_pred HHhcCchhhccccchhHHHHHHHHhc
Confidence 99999887766555 45566665544
No 16
>PHA03095 ankyrin-like protein; Provisional
Probab=100.00 E-value=3.6e-37 Score=367.49 Aligned_cols=303 Identities=23% Similarity=0.228 Sum_probs=261.9
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHhhccccccccccccccccchHHHHHHHcC---CHHHHHHHHhCCCCCccccccccCCC
Q 001613 18 ETTLIINSLLEDDKKQLINVSKRHFIDNSLDNADQQTAIVTKLLRVSCIFD---SVSCATSLVNGDLGPVALVNEVEESS 94 (1044)
Q Consensus 18 e~~~ll~AIl~dD~~~L~~li~~~~~~~~l~~~~~~~~~~~T~Lh~AA~~G---~~eivk~LL~~g~~~~adiN~~d~~~ 94 (1044)
++...+.+..+.+++.++.++..+... +..+..+.||||+|+..| +.+++++|++.| +++|.++. .
T Consensus 14 ~l~~~~~~~~~~~~~~v~~Ll~~ga~v------n~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~G----adin~~~~-~ 82 (471)
T PHA03095 14 ALYDYLLNASNVTVEEVRRLLAAGADV------NFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAG----ADVNAPER-C 82 (471)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHcCCCc------ccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCC----CCCCCCCC-C
Confidence 344445556668888888888765432 224456799999999999 999999999999 99999999 9
Q ss_pred CChHHHHHHHcC-CHHHHHHHHHcCCCCCcccCCCCCchHHHHHHhCCCcceecCCCCCchhHHHHHHhcCCHHHHHHHH
Q 001613 95 GMTALHLAAESH-TARCVELLLKKRARTDIRSKDGRRLLPLELSLSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLS 173 (1044)
Q Consensus 95 G~TpLH~Aa~~G-~~eiVklLL~~GAdvn~~d~~G~T~lpLh~Aa~~g~~eIv~~~~~~~~t~L~~Ai~~g~~eivklLl 173 (1044)
|.||||+|+..| +.+++++|+++|++++..+..|.| |||+|+... .++.+++++|+
T Consensus 83 g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~t--pLh~a~~~~---------------------~~~~~iv~~Ll 139 (471)
T PHA03095 83 GFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRT--PLHVYLSGF---------------------NINPKVIRLLL 139 (471)
T ss_pred CCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCC--HHHHHhhCC---------------------cCCHHHHHHHH
Confidence 999999999999 599999999999999999999999 999988433 24578899999
Q ss_pred HcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHHhccCCCcccccchhhHHHHHHHHhcCCchHHHHHHHcCCCC
Q 001613 174 QKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLHDSDLGAKEKTTIYECVIREALALGRATKLQRAVKRNSTP 253 (1044)
Q Consensus 174 ~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~~~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~ 253 (1044)
++|++++. .+.. |.||||+|+..+...
T Consensus 140 ~~gad~~~---------------------------------------~d~~--------------g~tpL~~a~~~~~~~ 166 (471)
T PHA03095 140 RKGADVNA---------------------------------------LDLY--------------GMTPLAVLLKSRNAN 166 (471)
T ss_pred HcCCCCCc---------------------------------------cCCC--------------CCCHHHHHHHcCCCC
Confidence 99987653 2222 899999999887432
Q ss_pred CcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHH
Q 001613 254 TTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQA--GDEDVIEILLKSKNIDINDADADADGNSALHCA 331 (1044)
Q Consensus 254 ~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~Aa~~--G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~A 331 (1044)
. ..+++|++.|++++.. |..|.||||+|+.. ++.+++++|++. |+++ +.+|..|.||||+|
T Consensus 167 ~------------~iv~~Ll~~g~~~~~~--d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~-g~~~--~~~d~~g~tpLh~A 229 (471)
T PHA03095 167 V------------ELLRLLIDAGADVYAV--DDRFRSLLHHHLQSFKPRARIVRELIRA-GCDP--AATDMLGNTPLHSM 229 (471)
T ss_pred H------------HHHHHHHHcCCCCccc--CCCCCCHHHHHHHHCCCcHHHHHHHHHc-CCCC--cccCCCCCCHHHHH
Confidence 2 2399999999999876 89999999999975 788999999999 9999 89999999999999
Q ss_pred HhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCC
Q 001613 332 LKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDH 411 (1044)
Q Consensus 332 a~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~ 411 (1044)
+..|. ....+++.|+++|+++|.+|..|+||||+|+..|+.++|++||++|++ +|.+|..|+||||+|+.+|+
T Consensus 230 a~~~~------~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad-~n~~~~~g~tpl~~A~~~~~ 302 (471)
T PHA03095 230 ATGSS------CKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGAD-INAVSSDGNTPLSLMVRNNN 302 (471)
T ss_pred HhcCC------chHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCC
Confidence 99882 135789999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHCCCCcccccCC
Q 001613 412 MVCAEVLLRWGANSEVLNLR 431 (1044)
Q Consensus 412 ~~iVklLL~~GAdin~~d~~ 431 (1044)
.+++++|+++|++++..+..
T Consensus 303 ~~~v~~LL~~~~~~~~~~~~ 322 (471)
T PHA03095 303 GRAVRAALAKNPSAETVAAT 322 (471)
T ss_pred HHHHHHHHHhCCCHHHHHHH
Confidence 99999999999998765543
No 17
>PHA02917 ankyrin-like protein; Provisional
Probab=100.00 E-value=4.4e-37 Score=375.85 Aligned_cols=402 Identities=12% Similarity=0.054 Sum_probs=294.3
Q ss_pred CChhHHHHHHHHHh---cCHHHHHHHHHhhccccccccccccccccchHHHHHHHcCCHH----HHHHHHhCCCCCcccc
Q 001613 15 TDLETTLIINSLLE---DDKKQLINVSKRHFIDNSLDNADQQTAIVTKLLRVSCIFDSVS----CATSLVNGDLGPVALV 87 (1044)
Q Consensus 15 ~d~e~~~ll~AIl~---dD~~~L~~li~~~~~~~~l~~~~~~~~~~~T~Lh~AA~~G~~e----ivk~LL~~g~~~~adi 87 (1044)
+...-++|.-|... ++.+.+..++..+... ...+..+.||||+|+..|+.+ +++.|++.+ ..+
T Consensus 29 d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v------~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~----~~~ 98 (661)
T PHA02917 29 NQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNP------LHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEAT----GYS 98 (661)
T ss_pred CCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc------cccCCCCCCHHHHHHHcCChhHHHHHHHHHHhcc----CCC
Confidence 44556688888777 6788887777655432 234567899999999999955 567888764 224
Q ss_pred ccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCchHHHHHHhCCCcceecCCCCCchhHHHHHHhcCCHH
Q 001613 88 NEVEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLLPLELSLSSSRMDVIWNPDEYSVEDLVVILGQKNLT 167 (1044)
Q Consensus 88 N~~d~~~G~TpLH~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T~lpLh~Aa~~g~~eIv~~~~~~~~t~L~~Ai~~g~~e 167 (1044)
|..+. .+++|+|+.+|+.++|++||++|||+|.+|.+|+| |||+|+. +..|+.+
T Consensus 99 n~~~~---~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T--~L~~~~a---------------------~~~~~~e 152 (661)
T PHA02917 99 NINDF---NIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRS--VIENYVM---------------------TDDPVPE 152 (661)
T ss_pred CCCCc---chHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCcc--HHHHHHH---------------------ccCCCHH
Confidence 44333 37788899999999999999999999999999999 7775432 2345688
Q ss_pred HHHHHHHcCCCcchHHHHhhhcC-------cHHHHHHHHHHHh-------------hhhhhHHHHhccCCCcccccchhh
Q 001613 168 TVKLLSQKTKELDEVAYANAVGG-------RIVALAALLIVAA-------------DKVNESILVLHDSDLGAKEKTTIY 227 (1044)
Q Consensus 168 ivklLl~~gadi~~~~~~~a~~g-------~~~~l~~ll~~a~-------------~~~~~~~l~~~~adin~~~~~~~~ 227 (1044)
++++|+++|++++..... ...| .....+.++.+.. .....++|+.+|+++|.++..
T Consensus 153 ivklLi~~Ga~vn~~d~~-~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~--- 228 (661)
T PHA02917 153 IIDLFIENGCSVLYEDED-DEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKN--- 228 (661)
T ss_pred HHHHHHHcCCCccccccc-cccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCC---
Confidence 899999999998632100 0001 0011133333321 223467888899999999887
Q ss_pred HHHHHHHHhcCCchHHHHHHHcCCCC--CcchhHHHHHhhHHHHHHHHHcCCCCCCc--cCCCCCCcHHHHHHHc-----
Q 001613 228 ECVIREALALGRATKLQRAVKRNSTP--TTSQSAEKRKLLLLEIELLQLFGAVANGS--CTDKKVGPPLILATQA----- 298 (1044)
Q Consensus 228 ~~~i~~a~~~gg~t~L~~A~~~g~~~--~~~~~~~~~~~l~~~velLl~~GAdin~~--~~d~~G~TpLh~Aa~~----- 298 (1044)
|.||||+|+.+|+.+ + |++|+. |++++.. ..|..|.+|+|+|+..
T Consensus 229 -----------G~TpLh~A~~~g~~~~ei--------------vk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~ 282 (661)
T PHA02917 229 -----------YCTALQYYIKSSHIDIDI--------------VKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYR 282 (661)
T ss_pred -----------CCcHHHHHHHcCCCcHHH--------------HHHHHh-CCcccccccccCcccccchHHHHHHHhhcc
Confidence 999999999999864 5 899875 8877531 2367788999999942
Q ss_pred ----CCHHHHHHHHHcCCCCCCC-----CCC------------CCCCchHHHHHHh---cCCCcccccchHHHHHHHHhc
Q 001613 299 ----GDEDVIEILLKSKNIDIND-----ADA------------DADGNSALHCALK---TSMGLSQHILQNRIVGILLKH 354 (1044)
Q Consensus 299 ----G~~eiVk~LL~~~gadvn~-----n~~------------d~~G~TpLh~Aa~---~g~~~~~~~~~~~iVklLLe~ 354 (1044)
.+.++|++||+. |++.+. +.. ...+.++||.+.. .| ....++|++|+++
T Consensus 283 ~~~~v~~~iv~~Li~~-Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g------~~~~~~v~~Ll~~ 355 (661)
T PHA02917 283 YNKDVDLDLVKLFLEN-GKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFG------DIDIPLVECMLEY 355 (661)
T ss_pred ccccchHHHHHHHHhC-CCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcC------CCcHHHHHHHHHc
Confidence 278999999999 887521 111 2234455555443 44 1146799999999
Q ss_pred CCeeeecCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCCcccCCCCCCcHHHHHHHcC-----------------------
Q 001613 355 GAIVSQQNKLGLTALHIAAGSGNSQALEDLIR-KEPDCINLKTIMMETPLFFAVKND----------------------- 410 (1044)
Q Consensus 355 GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~-~gad~in~~d~~G~TpLh~Aa~~g----------------------- 410 (1044)
||++|.++..|.|+. ...+.+++++||. .|++ ++..+.+|+||||.|++.+
T Consensus 356 GAdvn~~~~~g~~~~----~~~~~~~i~~LL~~~ga~-~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (661)
T PHA02917 356 GAVVNKEAIHGYFRN----INIDSYTMKYLLKKEGGD-AVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACP 430 (661)
T ss_pred CCCCCCCCccccchh----hcCCHHHHHHHHHhcCCC-ccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhh
Confidence 999999999999854 3667889998887 5777 6666778999999998543
Q ss_pred CHHHHHHHHHCCCCcccccCCCCcHHHHHHHcChHHHHHHhhhcCccccccchhhhhhhhcCChhhhhhHHHhhhcccCC
Q 001613 411 HMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLLKAANTCHTNLAFLNQEKQNASLESDEDISGTCEALLSMVDDN 490 (1044)
Q Consensus 411 ~~~iVklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~Ll~~~~~n~~d~~~~~~~l~~A~~~~~~~i~~~~~~l~~~~d~~ 490 (1044)
..+++++|+.+|||+|.+|..|+||||+|+..+...+++.+-....+.
T Consensus 431 ~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdi-------------------------------- 478 (661)
T PHA02917 431 ILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDV-------------------------------- 478 (661)
T ss_pred hHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCC--------------------------------
Confidence 356889999999999999999999999999998777666443333221
Q ss_pred CCccccccCCceeeeeccccc-Cccccccccccccccccccc
Q 001613 491 SNTERICSGTKIEVCKYYESH-SGCIRGSKCFYALGEEQHRK 531 (1044)
Q Consensus 491 ~~~~~~~~~~~~~t~L~~Aa~-~G~~eivk~Ll~~GAd~~~~ 531 (1044)
...+..+.||||+|+. .++.+++++|+++|++++..
T Consensus 479 -----n~~d~~G~T~L~~A~~~~~~~~iv~~LL~~ga~i~~i 515 (661)
T PHA02917 479 -----NIRSNNGYTCIAIAINESRNIELLKMLLCHKPTLDCV 515 (661)
T ss_pred -----CCCCCCCCCHHHHHHHhCCCHHHHHHHHHcCCChhHH
Confidence 1123456789999995 78999999999999998643
No 18
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=2.2e-38 Score=389.68 Aligned_cols=425 Identities=23% Similarity=0.235 Sum_probs=303.2
Q ss_pred cccccchHHHHHHHcCCHHHHHHHHhCCCCCccccccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCch
Q 001613 53 QTAIVTKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLL 132 (1044)
Q Consensus 53 ~~~~~~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T~l 132 (1044)
.+..+.||||.||.++.++++++|+.+| +++...|. .|.||||.|+..|+++++.+|+.+||.++..+..|.|
T Consensus 205 ~~~~~~tpl~~a~~~nri~~~eLll~~g----adv~a~d~-~gl~~lh~a~~~g~~~i~~~l~~~ga~~~~~~vr~~t-- 277 (1143)
T KOG4177|consen 205 SALNGFTPLHIACKKNRIKVVELLLKHG----ADVSAKDE-SGLTPLHVAAFMGHLDIVKLLLQHGASVNVSTVRGET-- 277 (1143)
T ss_pred cccCCCCchhhhccccccceeeeeeecc----CcCCcccc-cCccHHHHHHhccchhHHHHHHhcccccCcccccccC--
Confidence 4456799999999999999999999998 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcceec----------CCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHH
Q 001613 133 PLELSLSSSRMDVIW----------NPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVA 202 (1044)
Q Consensus 133 pLh~Aa~~g~~eIv~----------~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a 202 (1044)
|||+|+..+..++.. .......++++.|...|..++++++++.++.++.-. ......+...+
T Consensus 278 plh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar--------~~g~t~lHlaa 349 (1143)
T KOG4177|consen 278 PLHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAAR--------TAGYTPLHLAA 349 (1143)
T ss_pred cchhhhccchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccC--------cCCcccccHhh
Confidence 999999999998874 233447899999999999999999999988775321 11112222222
Q ss_pred hhhhh--hHHHHhccCCCcccccchhhHHHHHHHHhcCCchHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCC
Q 001613 203 ADKVN--ESILVLHDSDLGAKEKTTIYECVIREALALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVAN 280 (1044)
Q Consensus 203 ~~~~~--~~~l~~~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin 280 (1044)
..... ..++..++..-..... .+.+++|.|+..+..+. +++|+..|+++|
T Consensus 350 ~~~~~~~~~~l~~~~~~~~~a~~--------------k~~~pl~la~~~g~~~~--------------v~Lll~~ga~~~ 401 (1143)
T KOG4177|consen 350 KEGQVEVAGALLEHGAQRRQAEE--------------KGFTPLHLAVKSGRVSV--------------VELLLEAGADPN 401 (1143)
T ss_pred hhhhHHHHHHhhccccccCcccc--------------cCCcchhhhcccCchhH--------------HHhhhhccCCcc
Confidence 22111 1222223333332222 37788888888887777 777787887766
Q ss_pred CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeee
Q 001613 281 GSCTDKKVGPPLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQ 360 (1044)
Q Consensus 281 ~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~ 360 (1044)
.. ++.|.||||.|+..++..+|+.+++. |++. +..+..|.||+|+|+..|. ..++...+++.|+++|.
T Consensus 402 ~~--gk~gvTplh~aa~~~~~~~v~l~l~~-gA~~--~~~~~lG~T~lhvaa~~g~-------~~~~~~~l~~~g~~~n~ 469 (1143)
T KOG4177|consen 402 SA--GKNGVTPLHVAAHYGNPRVVKLLLKR-GASP--NAKAKLGYTPLHVAAKKGR-------YLQIARLLLQYGADPNA 469 (1143)
T ss_pred cC--CCCCcceeeehhhccCcceEEEEecc-CCCh--hhHhhcCCChhhhhhhccc-------HhhhhhhHhhcCCCcch
Confidence 65 77778888888888888888888877 7777 7777777888888877761 56677777777777777
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHH
Q 001613 361 QNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAK 440 (1044)
Q Consensus 361 ~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~~G~TpLh~Aa 440 (1044)
....|.||||+|+..|+.++++.|++.++. .+.....|-|+||.|...++..+++.|+++|++++.++..|.||||+|+
T Consensus 470 ~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~-~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~ 548 (1143)
T KOG4177|consen 470 VSKQGFTPLHLAAQEGHTEVVQLLLEGGAN-DNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAV 548 (1143)
T ss_pred hccccCcchhhhhccCCchHHHHhhhcCCc-cCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHH
Confidence 777777777777777777777777777766 6677777777777777777777777777777777777777777777777
Q ss_pred HcChHHHHH-----HhhhcCccccccchhhhhhhhcCChhhhhhHHHhhhcccCCCCccccccCCceeeeecccccCccc
Q 001613 441 SQDMRFLLK-----AANTCHTNLAFLNQEKQNASLESDEDISGTCEALLSMVDDNSNTERICSGTKIEVCKYYESHSGCI 515 (1044)
Q Consensus 441 ~~g~~~Ll~-----~~~~n~~d~~~~~~~l~~A~~~~~~~i~~~~~~l~~~~d~~~~~~~~~~~~~~~t~L~~Aa~~G~~ 515 (1044)
..|+..+++ +++++..+ ..+.+|+|.|+..++.++++++-..... .++.+-++.|||+.|+..|++
T Consensus 549 ~~g~v~~VkfLLe~gAdv~ak~-~~G~TPLH~Aa~~G~~~i~~LLlk~GA~--------vna~d~~g~TpL~iA~~lg~~ 619 (1143)
T KOG4177|consen 549 HYGNVDLVKFLLEHGADVNAKD-KLGYTPLHQAAQQGHNDIAELLLKHGAS--------VNAADLDGFTPLHIAVRLGYL 619 (1143)
T ss_pred hcCCchHHHHhhhCCccccccC-CCCCChhhHHHHcChHHHHHHHHHcCCC--------CCcccccCcchhHHHHHhccc
Confidence 777555555 44444444 4445555555555555554432211111 122344556677777777777
Q ss_pred cccccccccccc-----ccccCCCcccccccc
Q 001613 516 RGSKCFYALGEE-----QHRKMNPGMCMIHAS 542 (1044)
Q Consensus 516 eivk~Ll~~GAd-----~~~~d~~G~tpLh~a 542 (1044)
++++.|+..+++ .......|.+|....
T Consensus 620 ~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~ 651 (1143)
T KOG4177|consen 620 SVVKLLKVVTATPAATDPVKENRKGAVPEDVA 651 (1143)
T ss_pred chhhHHHhccCccccccchhhhhcccChhhHH
Confidence 777777777777 455555555555443
No 19
>PHA03100 ankyrin repeat protein; Provisional
Probab=100.00 E-value=8.1e-37 Score=365.40 Aligned_cols=265 Identities=23% Similarity=0.290 Sum_probs=245.3
Q ss_pred ccccchHHHHHHHcCCHHHHHHHHhCCCCCccccccccCCCCChHHHH-----HHHcCCHHHHHHHHHcCCCCCcccCCC
Q 001613 54 TAIVTKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHL-----AAESHTARCVELLLKKRARTDIRSKDG 128 (1044)
Q Consensus 54 ~~~~~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~-----Aa~~G~~eiVklLL~~GAdvn~~d~~G 128 (1044)
...+.||||+|+..|+.++|++|++.| +++|..+. .|.||||+ |+..|+.++|++|+++|++++..+..|
T Consensus 32 ~~~~~t~L~~A~~~~~~~ivk~Ll~~g----~~~~~~~~-~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g 106 (480)
T PHA03100 32 YKKPVLPLYLAKEARNIDVVKILLDNG----ADINSSTK-NNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNG 106 (480)
T ss_pred hcccchhhhhhhccCCHHHHHHHHHcC----CCCCCccc-cCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCC
Confidence 456689999999999999999999998 89999999 99999999 999999999999999999999999999
Q ss_pred CCchHHHHHH--hCCCcceecCCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhh
Q 001613 129 RRLLPLELSL--SSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKV 206 (1044)
Q Consensus 129 ~T~lpLh~Aa--~~g~~eIv~~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~ 206 (1044)
.| |||+|+ .. |+.+++++|+++|++++.
T Consensus 107 ~t--pL~~A~~~~~-----------------------~~~~iv~~Ll~~g~~~~~------------------------- 136 (480)
T PHA03100 107 IT--PLLYAISKKS-----------------------NSYSIVEYLLDNGANVNI------------------------- 136 (480)
T ss_pred Cc--hhhHHHhccc-----------------------ChHHHHHHHHHcCCCCCc-------------------------
Confidence 88 888887 44 457789999999887642
Q ss_pred hhHHHHhccCCCcccccchhhHHHHHHHHhcCCchHHHHHHHcC--CCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccC
Q 001613 207 NESILVLHDSDLGAKEKTTIYECVIREALALGRATKLQRAVKRN--STPTTSQSAEKRKLLLLEIELLQLFGAVANGSCT 284 (1044)
Q Consensus 207 ~~~~l~~~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g--~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~ 284 (1044)
.+. .|.||||+|+..+ +.++ +++|+++|++++..
T Consensus 137 --------------~~~--------------~g~t~L~~A~~~~~~~~~i--------------v~~Ll~~g~din~~-- 172 (480)
T PHA03100 137 --------------KNS--------------DGENLLHLYLESNKIDLKI--------------LKLLIDKGVDINAK-- 172 (480)
T ss_pred --------------cCC--------------CCCcHHHHHHHcCCChHHH--------------HHHHHHCCCCcccc--
Confidence 222 2899999999999 7777 99999999999876
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCC------chHHHHHHhcCCCcccccch--HHHHHHHHhcCC
Q 001613 285 DKKVGPPLILATQAGDEDVIEILLKSKNIDINDADADADG------NSALHCALKTSMGLSQHILQ--NRIVGILLKHGA 356 (1044)
Q Consensus 285 d~~G~TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G------~TpLh~Aa~~g~~~~~~~~~--~~iVklLLe~GA 356 (1044)
+..|.||||+|+..|+.+++++|++. |+++ +..+..| .||||+|+..+ + .+++++|+++|+
T Consensus 173 d~~g~tpL~~A~~~~~~~iv~~Ll~~-ga~~--~~~~~~~~~~~~~~t~l~~a~~~~--------~~~~~iv~~Ll~~g~ 241 (480)
T PHA03100 173 NRYGYTPLHIAVEKGNIDVIKFLLDN-GADI--NAGDIETLLFTIFETPLHIAACYN--------EITLEVVNYLLSYGV 241 (480)
T ss_pred cCCCCCHHHHHHHhCCHHHHHHHHHc-CCCc--cCCCCCCCcHHHHHhHHHHHHHhC--------cCcHHHHHHHHHcCC
Confidence 78999999999999999999999999 9999 8888888 99999999999 7 999999999999
Q ss_pred eeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccc
Q 001613 357 IVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLN 429 (1044)
Q Consensus 357 dvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d 429 (1044)
++|.+|..|.||||+|+..|+.+++++|+++|++ +|.+|..|.||||+|+.+++.+++++|+++|++++..+
T Consensus 242 din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad-~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~~i~ 313 (480)
T PHA03100 242 PINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGAN-PNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTII 313 (480)
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHHHHH
Confidence 9999999999999999999999999999999998 99999999999999999999999999999999998755
No 20
>PHA03100 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.4e-36 Score=363.23 Aligned_cols=284 Identities=24% Similarity=0.269 Sum_probs=254.0
Q ss_pred CCHHHHHHHHhCCCCCccccccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCchHHHHHHhCCCcceec
Q 001613 68 DSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLLPLELSLSSSRMDVIW 147 (1044)
Q Consensus 68 G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T~lpLh~Aa~~g~~eIv~ 147 (1044)
...+++++|++.+ ...+..+. .+.||||+|+..|+.++|++||++|++++..+.+|.| |||++...
T Consensus 13 ~~~~~~~~~~~~~----~~~~~~~~-~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t--~L~~~~~~------- 78 (480)
T PHA03100 13 IKVKNIKYIIMED----DLNDYSYK-KPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNST--PLHYLSNI------- 78 (480)
T ss_pred HHHHHHHHHHhcC----ccchhhhc-ccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcC--HHHHHHHH-------
Confidence 4557888888775 44556666 9999999999999999999999999999999999988 88873221
Q ss_pred CCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHHhccCCCcccccchhh
Q 001613 148 NPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLHDSDLGAKEKTTIY 227 (1044)
Q Consensus 148 ~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~~~~adin~~~~~~~~ 227 (1044)
.|+..++.+++++|+++|++++. .+.
T Consensus 79 -----------~a~~~~~~~iv~~Ll~~ga~i~~---------------------------------------~d~---- 104 (480)
T PHA03100 79 -----------KYNLTDVKEIVKLLLEYGANVNA---------------------------------------PDN---- 104 (480)
T ss_pred -----------HHHhhchHHHHHHHHHCCCCCCC---------------------------------------CCC----
Confidence 14555678889999999987742 222
Q ss_pred HHHHHHHHhcCCchHHHHHH--HcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcC--CHHH
Q 001613 228 ECVIREALALGRATKLQRAV--KRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQAG--DEDV 303 (1044)
Q Consensus 228 ~~~i~~a~~~gg~t~L~~A~--~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~Aa~~G--~~ei 303 (1044)
.|.||||+|+ ..|+.++ +++|++.|++++.. +..|.||||+|+..| +.++
T Consensus 105 ----------~g~tpL~~A~~~~~~~~~i--------------v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~i 158 (480)
T PHA03100 105 ----------NGITPLLYAISKKSNSYSI--------------VEYLLDNGANVNIK--NSDGENLLHLYLESNKIDLKI 158 (480)
T ss_pred ----------CCCchhhHHHhcccChHHH--------------HHHHHHcCCCCCcc--CCCCCcHHHHHHHcCCChHHH
Confidence 2899999999 9999888 99999999999875 889999999999999 9999
Q ss_pred HHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCC------CcHHHHHHHcCC
Q 001613 304 IEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLG------LTALHIAAGSGN 377 (1044)
Q Consensus 304 Vk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G------~TpLh~Aa~~g~ 377 (1044)
+++|+++ |+++ +.++..|.||||+|+..| +.+++++|+++|++++..+..| .||||+|+..|+
T Consensus 159 v~~Ll~~-g~di--n~~d~~g~tpL~~A~~~~--------~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~ 227 (480)
T PHA03100 159 LKLLIDK-GVDI--NAKNRYGYTPLHIAVEKG--------NIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE 227 (480)
T ss_pred HHHHHHC-CCCc--ccccCCCCCHHHHHHHhC--------CHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc
Confidence 9999999 9999 889999999999999999 9999999999999999999999 999999999999
Q ss_pred --HHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHHHcChHHHHHHhhhcC
Q 001613 378 --SQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLLKAANTCH 455 (1044)
Q Consensus 378 --~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~Ll~~~~~n~ 455 (1044)
.+++++|+++|++ +|.+|..|.||||+|+..|+.+++++|+++|||++.+|..|.||||+|+..+..++++.+....
T Consensus 228 ~~~~iv~~Ll~~g~d-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g 306 (480)
T PHA03100 228 ITLEVVNYLLSYGVP-INIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNG 306 (480)
T ss_pred CcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcC
Confidence 9999999999999 9999999999999999999999999999999999999999999999999999888888665555
Q ss_pred cc
Q 001613 456 TN 457 (1044)
Q Consensus 456 ~d 457 (1044)
.+
T Consensus 307 ~~ 308 (480)
T PHA03100 307 PS 308 (480)
T ss_pred CC
Confidence 44
No 21
>PHA02989 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=356.32 Aligned_cols=284 Identities=17% Similarity=0.181 Sum_probs=240.4
Q ss_pred cCCHHHHHHHHhCCCCCccccccccCCCCChHHHHHHHc--CCHHHHHHHHHcCCCCCcccCCCCCchHHHHHHhCCCcc
Q 001613 67 FDSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAES--HTARCVELLLKKRARTDIRSKDGRRLLPLELSLSSSRMD 144 (1044)
Q Consensus 67 ~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~--G~~eiVklLL~~GAdvn~~d~~G~T~lpLh~Aa~~g~~e 144 (1044)
....++|++|++.| +++|.. . .|.||||.++.. ++.++|++||++|||+|.++ .+.| |||.|+.++...
T Consensus 13 ~~~~~~v~~LL~~G----advN~~-~-~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~t--pL~~a~~~~~~~ 83 (494)
T PHA02989 13 TVDKNALEFLLRTG----FDVNEE-Y-RGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIET--PLCAVLRNREIT 83 (494)
T ss_pred cCcHHHHHHHHHcC----CCcccc-c-CCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCC--cHHHHHhccCcc
Confidence 47899999999999 999998 5 799999876654 37999999999999999886 4566 999988776522
Q ss_pred eecCCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHHhccCCCcccccc
Q 001613 145 VIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLHDSDLGAKEKT 224 (1044)
Q Consensus 145 Iv~~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~~~~adin~~~~~ 224 (1044)
..++.+++++|+++|++++. ++..
T Consensus 84 -----------------~~~~~~iv~~Ll~~Gadin~---------------------------------------~d~~ 107 (494)
T PHA02989 84 -----------------SNKIKKIVKLLLKFGADINL---------------------------------------KTFN 107 (494)
T ss_pred -----------------hhhHHHHHHHHHHCCCCCCC---------------------------------------CCCC
Confidence 24567899999999887753 3333
Q ss_pred hhhHHHHHHHHhcCCchHHHHHHHcC---CCCCcchhHHHHHhhHHHHHHHHHcCCCC-CCccCCCCCCcHHHHHHHc--
Q 001613 225 TIYECVIREALALGRATKLQRAVKRN---STPTTSQSAEKRKLLLLEIELLQLFGAVA-NGSCTDKKVGPPLILATQA-- 298 (1044)
Q Consensus 225 ~~~~~~i~~a~~~gg~t~L~~A~~~g---~~~~~~~~~~~~~~l~~~velLl~~GAdi-n~~~~d~~G~TpLh~Aa~~-- 298 (1044)
|.||||.|+..+ +.++ +++|+++||++ +.. |..|.||||+|+..
T Consensus 108 --------------g~tpL~~a~~~~~~~~~ei--------------v~~Ll~~Gadin~~~--d~~g~tpLh~a~~~~~ 157 (494)
T PHA02989 108 --------------GVSPIVCFIYNSNINNCDM--------------LRFLLSKGINVNDVK--NSRGYNLLHMYLESFS 157 (494)
T ss_pred --------------CCcHHHHHHHhcccCcHHH--------------HHHHHHCCCCccccc--CCCCCCHHHHHHHhcc
Confidence 899999988764 4455 99999999999 654 88999999999865
Q ss_pred CCHHHHHHHHHcCCCCCCCCC-CCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHc--
Q 001613 299 GDEDVIEILLKSKNIDINDAD-ADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGS-- 375 (1044)
Q Consensus 299 G~~eiVk~LL~~~gadvn~n~-~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~-- 375 (1044)
++.++|++|++. |+++ +. .+..|.||||+|+..+. ...+.+++++|+++|++++.+|..|.|+||.++..
T Consensus 158 ~~~~iv~~Ll~~-Gadi--~~~~~~~g~tpL~~a~~~~~----~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~ 230 (494)
T PHA02989 158 VKKDVIKILLSF-GVNL--FEKTSLYGLTPMNIYLRNDI----DVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNK 230 (494)
T ss_pred CCHHHHHHHHHc-CCCc--cccccccCCChHHHHHhccc----ccccHHHHHHHHhCCCCccccCCccccHHHHHHHhch
Confidence 689999999999 9999 66 68899999999987651 12278999999999999999999999999987654
Q ss_pred ----CCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHHHcChHHHHHHh
Q 001613 376 ----GNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLLKAA 451 (1044)
Q Consensus 376 ----g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~Ll~~~ 451 (1044)
+..+++++|+. +++ +|.+|..|+||||+|+..|+.++|++|+++|||+|.+|..|+||||+|+..|+.++++.+
T Consensus 231 ~~~~~~~~il~~l~~-~ad-vn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~L 308 (494)
T PHA02989 231 ILSKKEFKVLNFILK-YIK-INKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRI 308 (494)
T ss_pred hhcccchHHHHHHHh-CCC-CCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 45688887765 677 999999999999999999999999999999999999999999999999999998888855
Q ss_pred hhc
Q 001613 452 NTC 454 (1044)
Q Consensus 452 ~~n 454 (1044)
-..
T Consensus 309 L~~ 311 (494)
T PHA02989 309 LQL 311 (494)
T ss_pred Hhc
Confidence 443
No 22
>PHA02875 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.6e-34 Score=339.21 Aligned_cols=242 Identities=21% Similarity=0.249 Sum_probs=211.6
Q ss_pred chHHHHHHHcCCHHHHHHHHhCCCCCccccccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCchHHHHH
Q 001613 58 TKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLLPLELS 137 (1044)
Q Consensus 58 ~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T~lpLh~A 137 (1044)
.++||.|+..|+.+++++|++.| +++|..+. .|.||||+|+..|+.++|++|+++|++++..+.++.| |||+|
T Consensus 3 ~~~L~~A~~~g~~~iv~~Ll~~g----~~~n~~~~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t--~L~~A 75 (413)
T PHA02875 3 QVALCDAILFGELDIARRLLDIG----INPNFEIY-DGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIES--ELHDA 75 (413)
T ss_pred chHHHHHHHhCCHHHHHHHHHCC----CCCCccCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCccc--HHHHH
Confidence 57899999999999999999988 88888888 8999999999999999999999999988888777776 66666
Q ss_pred HhCCCcceecCCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHHhccCC
Q 001613 138 LSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLHDSD 217 (1044)
Q Consensus 138 a~~g~~eIv~~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~~~~ad 217 (1044)
+..| +.+++++|++.|++...
T Consensus 76 ~~~g-----------------------~~~~v~~Ll~~~~~~~~------------------------------------ 96 (413)
T PHA02875 76 VEEG-----------------------DVKAVEELLDLGKFADD------------------------------------ 96 (413)
T ss_pred HHCC-----------------------CHHHHHHHHHcCCcccc------------------------------------
Confidence 6554 45567777766643211
Q ss_pred CcccccchhhHHHHHHHHhcCCchHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHH
Q 001613 218 LGAKEKTTIYECVIREALALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQ 297 (1044)
Q Consensus 218 in~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~Aa~ 297 (1044)
..+..|.||||+|+.
T Consensus 97 -----------------------------------------------------------------~~~~~g~tpL~~A~~ 111 (413)
T PHA02875 97 -----------------------------------------------------------------VFYKDGMTPLHLATI 111 (413)
T ss_pred -----------------------------------------------------------------cccCCCCCHHHHHHH
Confidence 025578999999999
Q ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcCC
Q 001613 298 AGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGN 377 (1044)
Q Consensus 298 ~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g~ 377 (1044)
.|+.++|++|++. |+++ +..+..|.||||+|+..| +.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 112 ~~~~~iv~~Ll~~-gad~--~~~~~~g~tpLh~A~~~~--------~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~ 180 (413)
T PHA02875 112 LKKLDIMKLLIAR-GADP--DIPNTDKFSPLHLAVMMG--------DIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGD 180 (413)
T ss_pred hCCHHHHHHHHhC-CCCC--CCCCCCCCCHHHHHHHcC--------CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 9999999999999 9999 889999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcccCCCCCC-cHHHHHHHcCCHHHHHHHHHCCCCcccc---cCCCCcHHHHHHHc
Q 001613 378 SQALEDLIRKEPDCINLKTIMME-TPLFFAVKNDHMVCAEVLLRWGANSEVL---NLRRERPIDFAKSQ 442 (1044)
Q Consensus 378 ~eiVklLL~~gad~in~~d~~G~-TpLh~Aa~~g~~~iVklLL~~GAdin~~---d~~G~TpLh~Aa~~ 442 (1044)
.+++++|+++|++ +|..+..|. ||||+|+..|+.+++++|+++|||+|.. +..+.|||++++..
T Consensus 181 ~eiv~~Ll~~ga~-~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~~ 248 (413)
T PHA02875 181 IAICKMLLDSGAN-IDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICNM 248 (413)
T ss_pred HHHHHHHHhCCCC-CCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHhh
Confidence 9999999999999 999988875 8899999999999999999999999876 66788999988654
No 23
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=100.00 E-value=3.4e-35 Score=340.94 Aligned_cols=358 Identities=18% Similarity=0.175 Sum_probs=285.9
Q ss_pred chHHHHHHHcCCHHHHHHHHhCCCCCccccccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCchHHHHH
Q 001613 58 TKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLLPLELS 137 (1044)
Q Consensus 58 ~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T~lpLh~A 137 (1044)
.++++.+... |..+++++.. ..++.++. .|.|++|.|+..+.. ++.-+...+.|..|.| |||+|
T Consensus 32 ~~~~~~~~~d---D~~tli~~kn----s~~~~~~~-~gd~~~~~~~~~~y~------~~~~~~~~a~D~~~n~--~l~~a 95 (929)
T KOG0510|consen 32 DSQALADTLD---DRHTLILEKN----SSTPGKRA-FGDTELHHASARNYI------LSKLAISYAKDSADNT--PLHAA 95 (929)
T ss_pred hHHHHHhhHH---HHHHHHHHhc----cccchhhh-hchhHHHHHHhhcch------hhhhhhhhhhhcccCc--hhHHH
Confidence 4444444333 4666666654 55677777 788888888877765 3434445556666655 66666
Q ss_pred HhCCCcceecCCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHHhccCC
Q 001613 138 LSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLHDSD 217 (1044)
Q Consensus 138 a~~g~~eIv~~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~~~~ad 217 (1044)
+++ ...+.+++|++.|++.+..
T Consensus 96 ~~~-----------------------~~~~~i~~Lls~gad~~~~----------------------------------- 117 (929)
T KOG0510|consen 96 VEY-----------------------NQGDKIQVLLSYGADTPLR----------------------------------- 117 (929)
T ss_pred hhc-----------------------chHHHHHHHHhcCCCCChh-----------------------------------
Confidence 554 4567799999999887632
Q ss_pred CcccccchhhHHHHHHHHhcCCchHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHH
Q 001613 218 LGAKEKTTIYECVIREALALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQ 297 (1044)
Q Consensus 218 in~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~Aa~ 297 (1044)
+ ..+.+|+|+|+..+.... +++|+++|+++|.. |..|.||||.||.
T Consensus 118 ----n--------------~~~~aplh~A~~~~~~s~--------------L~~Ll~~~~dvnl~--de~~~TpLh~A~~ 163 (929)
T KOG0510|consen 118 ----N--------------LNKNAPLHLAADSGNYSC--------------LKLLLDYGADVNLE--DENGFTPLHLAAR 163 (929)
T ss_pred ----h--------------hhccCchhhccccchHHH--------------HHHHHHhcCCcccc--ccCCCchhhHHHh
Confidence 1 128899999999999888 99999999999886 9999999999999
Q ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHh-----cCCeeeecCCCCCcHHHHH
Q 001613 298 AGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLK-----HGAIVSQQNKLGLTALHIA 372 (1044)
Q Consensus 298 ~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe-----~GAdvn~~d~~G~TpLh~A 372 (1044)
.++.+..+.|++. |+++ ...|.+|.+|+|.|++.| ..+.+++.+. .+..+|..+..|.||||.|
T Consensus 164 ~~~~E~~k~Li~~-~a~~--~K~~~~~~~~iH~aa~s~--------s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlA 232 (929)
T KOG0510|consen 164 KNKVEAKKELINK-GADP--CKSDIDGNFPIHEAARSG--------SKECMEIFLPEHGYERQTHINFDNNEKATPLHLA 232 (929)
T ss_pred cChHHHHHHHHhc-CCCC--CcccCcCCchHHHHHHhc--------chhhhhhhhccccchhhcccccccCCCCcchhhh
Confidence 9999988999999 9999 899999999999999999 8999999997 6788999999999999999
Q ss_pred HHcCCHHHHHHHHhcCCCC--------------cccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHH
Q 001613 373 AGSGNSQALEDLIRKEPDC--------------INLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDF 438 (1044)
Q Consensus 373 a~~g~~eiVklLL~~gad~--------------in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~~G~TpLh~ 438 (1044)
+..|+.++++.+|+.++.. +|..|.+|.||||+|++.|+.++++.|+..||+++.++.++.||||.
T Consensus 233 ve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~ 312 (929)
T KOG0510|consen 233 VEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHF 312 (929)
T ss_pred hhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHH
Confidence 9999999999999987652 67779999999999999999999999999999999999999999999
Q ss_pred HHHcChHHHHHHhhhcCccccccchhhhhhhhcCChhhhhhHHHhhhcccCCCCccccccCCceeeeecccccCcccccc
Q 001613 439 AKSQDMRFLLKAANTCHTNLAFLNQEKQNASLESDEDISGTCEALLSMVDDNSNTERICSGTKIEVCKYYESHSGCIRGS 518 (1044)
Q Consensus 439 Aa~~g~~~Ll~~~~~n~~d~~~~~~~l~~A~~~~~~~i~~~~~~l~~~~d~~~~~~~~~~~~~~~t~L~~Aa~~G~~eiv 518 (1044)
||.+|....++.+.. +.+......++..+.||||+|+++||.+++
T Consensus 313 AA~yg~~ntv~rLL~-----------------------------------~~~~rllne~D~~g~tpLHlaa~~gH~~v~ 357 (929)
T KOG0510|consen 313 AAIYGRINTVERLLQ-----------------------------------ESDTRLLNESDLHGMTPLHLAAKSGHDRVV 357 (929)
T ss_pred HHHcccHHHHHHHHh-----------------------------------CcCccccccccccCCCchhhhhhcCHHHHH
Confidence 999985555542222 112222333456778999999999999999
Q ss_pred ccccccccccc---ccCCCcccccccccccc----ccceeccCCcccccCCCCCCccc
Q 001613 519 KCFYALGEEQH---RKMNPGMCMIHASTQEF----KSKIFVGGLPFFLDSDSLGGYFE 569 (1044)
Q Consensus 519 k~Ll~~GAd~~---~~d~~G~tpLh~aa~~~----~~kifVg~L~~~~te~~Lr~~F~ 569 (1044)
++|+..||+.. ..|..|.|++|.++.+. +.++..-|..-.+....-+.+|-
T Consensus 358 qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~ 415 (929)
T KOG0510|consen 358 QLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFD 415 (929)
T ss_pred HHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeecccccccccc
Confidence 99999999998 56999999999998433 44555555555454444444443
No 24
>PHA02878 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.8e-34 Score=344.98 Aligned_cols=242 Identities=17% Similarity=0.180 Sum_probs=203.5
Q ss_pred ccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCchHHHHHHhCCCcceecCCCCCchhHHHHHHhcCCHH
Q 001613 88 NEVEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLLPLELSLSSSRMDVIWNPDEYSVEDLVVILGQKNLT 167 (1044)
Q Consensus 88 N~~d~~~G~TpLH~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T~lpLh~Aa~~g~~eIv~~~~~~~~t~L~~Ai~~g~~e 167 (1044)
+..+. .+.||||+||..|+.++|++|+++|+++|..|.+|+| |||+|+..|+ .+
T Consensus 31 ~~~~~-~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~T--pLh~A~~~g~-----------------------~~ 84 (477)
T PHA02878 31 TSASL-IPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLT--PLHIICKEPN-----------------------KL 84 (477)
T ss_pred Ccccc-cCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC--HHHHHHHCcc-----------------------Hh
Confidence 34445 7899999999999999999999999999999999998 8888887765 55
Q ss_pred HHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHHhccCCCcccccchhhHHHHHHHHhcCCchHHHHHH
Q 001613 168 TVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLHDSDLGAKEKTTIYECVIREALALGRATKLQRAV 247 (1044)
Q Consensus 168 ivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~~~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~ 247 (1044)
++++|++.+..... ..+.++++.|+
T Consensus 85 ~v~~Ll~~~~~~~~-------------------------------------------------------~~~~~~l~~a~ 109 (477)
T PHA02878 85 GMKEMIRSINKCSV-------------------------------------------------------FYTLVAIKDAF 109 (477)
T ss_pred HHHHHHHHHhcccc-------------------------------------------------------ccchhhHHHHH
Confidence 68888865432210 01678999999
Q ss_pred HcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCCC-C
Q 001613 248 KRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQA--GDEDVIEILLKSKNIDINDADADAD-G 324 (1044)
Q Consensus 248 ~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~Aa~~--G~~eiVk~LL~~~gadvn~n~~d~~-G 324 (1044)
..++.++ +++|+..+.+.... .....+..+... .+.+++++|++. |+++ +..+.. |
T Consensus 110 ~~~~~ei--------------~~~Ll~~~~~~~~~----~~~~~~~~~~~~~~~~~~iv~~Ll~~-gadi--n~~~~~~g 168 (477)
T PHA02878 110 NNRNVEI--------------FKIILTNRYKNIQT----IDLVYIDKKSKDDIIEAEITKLLLSY-GADI--NMKDRHKG 168 (477)
T ss_pred HcCCHHH--------------HHHHHhCcccCccc----CcHHHHhhccchhhHHHHHHHHHHHc-CCCC--CccCCCCC
Confidence 9999888 99999876554321 011111111122 234699999999 9999 888988 9
Q ss_pred chHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHH
Q 001613 325 NSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLF 404 (1044)
Q Consensus 325 ~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh 404 (1044)
.||||+|+..| +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++ +|.+|..|+||||
T Consensus 169 ~tpLh~A~~~~--------~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~-in~~d~~g~TpLh 239 (477)
T PHA02878 169 NTALHYATENK--------DQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAS-TDARDKCGNTPLH 239 (477)
T ss_pred CCHHHHHHhCC--------CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC-CCCCCCCCCCHHH
Confidence 99999999999 99999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHc-CCHHHHHHHHHCCCCcccccC-CCCcHHHHHH
Q 001613 405 FAVKN-DHMVCAEVLLRWGANSEVLNL-RRERPIDFAK 440 (1044)
Q Consensus 405 ~Aa~~-g~~~iVklLL~~GAdin~~d~-~G~TpLh~Aa 440 (1044)
+|+.. ++.+++++|+++|+++|.++. .|.||||+|+
T Consensus 240 ~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A~ 277 (477)
T PHA02878 240 ISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSI 277 (477)
T ss_pred HHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHHc
Confidence 99976 799999999999999999986 7999999994
No 25
>PHA02791 ankyrin-like protein; Provisional
Probab=100.00 E-value=5.3e-34 Score=315.48 Aligned_cols=235 Identities=18% Similarity=0.152 Sum_probs=157.0
Q ss_pred cCCHHHHHHHHhCCCCCccccccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCchHHHHHHhCCCccee
Q 001613 67 FDSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLLPLELSLSSSRMDVI 146 (1044)
Q Consensus 67 ~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T~lpLh~Aa~~g~~eIv 146 (1044)
+++.+++++|++.+ .+.+|. .|.||||+|+..|+.++|++|+++|++++..+ |+| |||+|+..|+
T Consensus 9 ~~~~~~~~~Lis~~------a~~~D~-~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~T--pLh~Aa~~g~---- 73 (284)
T PHA02791 9 WKSKQLKSFLSSKD------AFKADV-HGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEF--PLHQAATLED---- 73 (284)
T ss_pred cCHHHHHHHHHhCC------CCCCCC-CCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCC--HHHHHHHCCC----
Confidence 57899999999987 467888 99999999999999999999999999988754 566 7777766554
Q ss_pred cCCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHHhccCCCcccccchh
Q 001613 147 WNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLHDSDLGAKEKTTI 226 (1044)
Q Consensus 147 ~~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~~~~adin~~~~~~~ 226 (1044)
.+++++|++.|++++. .+..
T Consensus 74 -------------------~eiV~lLL~~Gadvn~---------------------------------------~d~~-- 93 (284)
T PHA02791 74 -------------------TKIVKILLFSGMDDSQ---------------------------------------FDDK-- 93 (284)
T ss_pred -------------------HHHHHHHHHCCCCCCC---------------------------------------CCCC--
Confidence 5667777777765532 1222
Q ss_pred hHHHHHHHHhcCCchHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCC-CcHHHHHHHcCCHHHHH
Q 001613 227 YECVIREALALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKV-GPPLILATQAGDEDVIE 305 (1044)
Q Consensus 227 ~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G-~TpLh~Aa~~G~~eiVk 305 (1044)
|.||||+|+..|+.++ +++|+++|++++.. +..| .||||+|+..|+.++|+
T Consensus 94 ------------G~TpLh~Aa~~g~~ei--------------vk~Ll~~gadin~~--~~~g~~TpL~~Aa~~g~~eivk 145 (284)
T PHA02791 94 ------------GNTALYYAVDSGNMQT--------------VKLFVKKNWRLMFY--GKTGWKTSFYHAVMLNDVSIVS 145 (284)
T ss_pred ------------CCCHHHHHHHcCCHHH--------------HHHHHHCCCCcCcc--CCCCCcHHHHHHHHcCCHHHHH
Confidence 6666666666666655 66666666666543 4444 35666666666666666
Q ss_pred HHHHcCCCCCCCCCCC-CCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcH-HHHHHHcCCHHHHHH
Q 001613 306 ILLKSKNIDINDADAD-ADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTA-LHIAAGSGNSQALED 383 (1044)
Q Consensus 306 ~LL~~~gadvn~n~~d-~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~Tp-Lh~Aa~~g~~eiVkl 383 (1044)
+||++ +.+. .| ..|.||||+|+..| +.+++++|+++||++|.+|..|.|| ||+|+..|+.++|++
T Consensus 146 ~LL~~-~~~~----~d~~~g~TpLh~Aa~~g--------~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~l 212 (284)
T PHA02791 146 YFLSE-IPST----FDLAILLSCIHITIKNG--------HVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQA 212 (284)
T ss_pred HHHhc-CCcc----cccccCccHHHHHHHcC--------CHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHH
Confidence 66665 3322 12 23566666666666 6666666666666666666666655 666666666666666
Q ss_pred HHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc
Q 001613 384 LIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANS 425 (1044)
Q Consensus 384 LL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdi 425 (1044)
||++|++ +|.+|..| |+| ++.|++++||++-++.
T Consensus 213 Ll~~Ga~-in~~~~~~-~~l------~~~e~~~~ll~~~~~~ 246 (284)
T PHA02791 213 LFKYDIN-IYSVNLEN-VLL------DDAEIAKMIIEKHVEY 246 (284)
T ss_pred HHHCCCC-CccCcccC-ccC------CCHHHHHHHHHhhhhh
Confidence 6666666 66666533 444 5666666666655543
No 26
>PHA02989 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=338.82 Aligned_cols=288 Identities=20% Similarity=0.204 Sum_probs=237.2
Q ss_pred cCHHHHHHHHHhhccccccccccccccccchHHHHHHHc--CCHHHHHHHHhCCCCCccccccccCCCCChHHHHHHHcC
Q 001613 29 DDKKQLINVSKRHFIDNSLDNADQQTAIVTKLLRVSCIF--DSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAESH 106 (1044)
Q Consensus 29 dD~~~L~~li~~~~~~~~l~~~~~~~~~~~T~Lh~AA~~--G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~G 106 (1044)
-|.+.++.++..+...+. . ..+.|+||.++.. ++.++|++|+++| |++|.++ .+.||||.|+.++
T Consensus 14 ~~~~~v~~LL~~GadvN~------~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~G----Advn~~~--~~~tpL~~a~~~~ 80 (494)
T PHA02989 14 VDKNALEFLLRTGFDVNE------E-YRGNSILLLYLKRKDVKIKIVKLLIDNG----ADVNYKG--YIETPLCAVLRNR 80 (494)
T ss_pred CcHHHHHHHHHcCCCccc------c-cCCCCHHHHHHhcCCCChHHHHHHHHcC----CCccCCC--CCCCcHHHHHhcc
Confidence 466677777766654221 2 3467888765544 3789999999999 9999885 4799999998764
Q ss_pred ------CHHHHHHHHHcCCCCCcccCCCCCchHHHHHHhCCCcceecCCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcc
Q 001613 107 ------TARCVELLLKKRARTDIRSKDGRRLLPLELSLSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELD 180 (1044)
Q Consensus 107 ------~~eiVklLL~~GAdvn~~d~~G~T~lpLh~Aa~~g~~eIv~~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~ 180 (1044)
+.++|++||++|||+|.++.+|.| |||.|+..++ .++.+++++|+++|++++
T Consensus 81 ~~~~~~~~~iv~~Ll~~Gadin~~d~~g~t--pL~~a~~~~~--------------------~~~~eiv~~Ll~~Gadin 138 (494)
T PHA02989 81 EITSNKIKKIVKLLLKFGADINLKTFNGVS--PIVCFIYNSN--------------------INNCDMLRFLLSKGINVN 138 (494)
T ss_pred CcchhhHHHHHHHHHHCCCCCCCCCCCCCc--HHHHHHHhcc--------------------cCcHHHHHHHHHCCCCcc
Confidence 578999999999999999999998 8988876543 357899999999998873
Q ss_pred hHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHHhccCCCcccccchhhHHHHHHHHhcCCchHHHHHHHcC--CCCCcchh
Q 001613 181 EVAYANAVGGRIVALAALLIVAADKVNESILVLHDSDLGAKEKTTIYECVIREALALGRATKLQRAVKRN--STPTTSQS 258 (1044)
Q Consensus 181 ~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~~~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g--~~~~~~~~ 258 (1044)
. .++. .|.||||+|+..+ +.++
T Consensus 139 ~--------------------------------------~~d~--------------~g~tpLh~a~~~~~~~~~i---- 162 (494)
T PHA02989 139 D--------------------------------------VKNS--------------RGYNLLHMYLESFSVKKDV---- 162 (494)
T ss_pred c--------------------------------------ccCC--------------CCCCHHHHHHHhccCCHHH----
Confidence 1 1222 2999999998764 4555
Q ss_pred HHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcC----CHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhc
Q 001613 259 AEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQAG----DEDVIEILLKSKNIDINDADADADGNSALHCALKT 334 (1044)
Q Consensus 259 ~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~Aa~~G----~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~ 334 (1044)
+++|+++|++++.. .+..|.||||+|+..+ +.++|++|++. |+++ +..+..+.|+||.++..
T Consensus 163 ----------v~~Ll~~Gadi~~~-~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~-Ga~v--n~~~~~~~t~l~~~~~~ 228 (494)
T PHA02989 163 ----------IKILLSFGVNLFEK-TSLYGLTPMNIYLRNDIDVISIKVIKYLIKK-GVNI--ETNNNGSESVLESFLDN 228 (494)
T ss_pred ----------HHHHHHcCCCcccc-ccccCCChHHHHHhcccccccHHHHHHHHhC-CCCc--cccCCccccHHHHHHHh
Confidence 99999999999863 3779999999998764 89999999999 9999 88888999999998875
Q ss_pred CCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHH
Q 001613 335 SMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVC 414 (1044)
Q Consensus 335 g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~i 414 (1044)
+. .......+++++|++ |+++|.+|..|+||||+|+..|+.++|++||++|++ +|.+|..|+||||+|+.+|+.++
T Consensus 229 ~~--~~~~~~~~il~~l~~-~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gad-in~~d~~G~TpL~~A~~~~~~~i 304 (494)
T PHA02989 229 NK--ILSKKEFKVLNFILK-YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDD-IYNVSKDGDTVLTYAIKHGNIDM 304 (494)
T ss_pred ch--hhcccchHHHHHHHh-CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHH
Confidence 41 111225778887765 699999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHCCCCc
Q 001613 415 AEVLLRWGANS 425 (1044)
Q Consensus 415 VklLL~~GAdi 425 (1044)
|++|++.+++.
T Consensus 305 v~~LL~~~p~~ 315 (494)
T PHA02989 305 LNRILQLKPGK 315 (494)
T ss_pred HHHHHhcCCCh
Confidence 99999987644
No 27
>PHA02798 ankyrin-like protein; Provisional
Probab=100.00 E-value=1.6e-32 Score=329.19 Aligned_cols=266 Identities=20% Similarity=0.222 Sum_probs=226.4
Q ss_pred cchHHHHHH--HcCCHHHHHHHHhCCCCCccccccccCCCCChHHHHHHHc-----CCHHHHHHHHHcCCCCCcccCCCC
Q 001613 57 VTKLLRVSC--IFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAES-----HTARCVELLLKKRARTDIRSKDGR 129 (1044)
Q Consensus 57 ~~T~Lh~AA--~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~-----G~~eiVklLL~~GAdvn~~d~~G~ 129 (1044)
+.|+++.+. ..++.++|++|++.| +++|.+|. .|.||||+|+.+ ++.+++++|+++|||+|.+|.+|+
T Consensus 36 ~~~~~~~yl~~~~~~~~iv~~Ll~~G----advn~~d~-~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~ 110 (489)
T PHA02798 36 EYSIFQKYLQRDSPSTDIVKLFINLG----ANVNGLDN-EYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGE 110 (489)
T ss_pred cchHHHHHHhCCCCCHHHHHHHHHCC----CCCCCCCC-CCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcC
Confidence 456666333 345899999999999 99999999 999999999865 779999999999999999999999
Q ss_pred CchHHHHHHhCCCcceecCCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhH
Q 001613 130 RLLPLELSLSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNES 209 (1044)
Q Consensus 130 T~lpLh~Aa~~g~~eIv~~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~ 209 (1044)
| |||+|+.++.. ++.+++++|+++|++++.
T Consensus 111 T--pLh~a~~~~~~--------------------~~~~iv~~Ll~~Gadvn~---------------------------- 140 (489)
T PHA02798 111 T--PLYCLLSNGYI--------------------NNLEILLFMIENGADTTL---------------------------- 140 (489)
T ss_pred c--HHHHHHHcCCc--------------------ChHHHHHHHHHcCCCccc----------------------------
Confidence 9 99999887642 357889999999887753
Q ss_pred HHHhccCCCcccccchhhHHHHHHHHhcCCchHHHHHHHcCC---CCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCC
Q 001613 210 ILVLHDSDLGAKEKTTIYECVIREALALGRATKLQRAVKRNS---TPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDK 286 (1044)
Q Consensus 210 ~l~~~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~---~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~ 286 (1044)
.+.. |.||||+|+..++ .++ +++|++.|++++.. .+.
T Consensus 141 -----------~d~~--------------g~tpL~~a~~~~~~~~~~v--------------v~~Ll~~gadin~~-~~~ 180 (489)
T PHA02798 141 -----------LDKD--------------GFTMLQVYLQSNHHIDIEI--------------IKLLLEKGVDINTH-NNK 180 (489)
T ss_pred -----------cCCC--------------CCcHHHHHHHcCCcchHHH--------------HHHHHHhCCCcccc-cCc
Confidence 2222 9999999999887 555 99999999999864 245
Q ss_pred CCCcHHHHHHHc----CCHHHHHHHHHcCCCCCCCCCCCCCCchHHHH-------HHhcCCCcccccchHHHHHHHHhcC
Q 001613 287 KVGPPLILATQA----GDEDVIEILLKSKNIDINDADADADGNSALHC-------ALKTSMGLSQHILQNRIVGILLKHG 355 (1044)
Q Consensus 287 ~G~TpLh~Aa~~----G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~-------Aa~~g~~~~~~~~~~~iVklLLe~G 355 (1044)
.|.||||.++.. ++.+++++|+++ |+++ +..+..|.|+++. +...+ +.+++++|+. |
T Consensus 181 ~~~t~Lh~~~~~~~~~~~~~ivk~Li~~-Ga~i--~~~~~~~~~~~~~~l~~l~~~~~~~--------~~~i~~~l~~-~ 248 (489)
T PHA02798 181 EKYDTLHCYFKYNIDRIDADILKLFVDN-GFII--NKENKSHKKKFMEYLNSLLYDNKRF--------KKNILDFIFS-Y 248 (489)
T ss_pred CCCcHHHHHHHhccccCCHHHHHHHHHC-CCCc--ccCCccccchHHHHHHHHHhhcccc--------hHHHHHHHHh-c
Confidence 789999998765 489999999999 9999 8888888998772 22333 6788888766 6
Q ss_pred CeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccC
Q 001613 356 AIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNL 430 (1044)
Q Consensus 356 Advn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~ 430 (1044)
+|+|.+|..|+||||+|+..|+.+++++||++|++ +|.+|..|+||||+|+.+++.++++.|+++|++++....
T Consensus 249 ~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAd-in~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~~i~~ 322 (489)
T PHA02798 249 IDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGD-INIITELGNTCLFTAFENESKFIFNSILNKKPNKNTISY 322 (489)
T ss_pred CCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCc-ccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHHHHHH
Confidence 99999999999999999999999999999999999 999999999999999999999999999999999986544
No 28
>PHA02875 ankyrin repeat protein; Provisional
Probab=100.00 E-value=7.8e-33 Score=324.92 Aligned_cols=221 Identities=21% Similarity=0.213 Sum_probs=192.9
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCchHHHHHHhCCCcceecCCCCCchhHHHHHHhcCCHHHHHHHHH
Q 001613 95 GMTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLLPLELSLSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQ 174 (1044)
Q Consensus 95 G~TpLH~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T~lpLh~Aa~~g~~eIv~~~~~~~~t~L~~Ai~~g~~eivklLl~ 174 (1044)
.+++||.|+..|+.++|++|+++|+++|..+.+|.| |||+|+..|+ .+++++|++
T Consensus 2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~t--pL~~A~~~~~-----------------------~~~v~~Ll~ 56 (413)
T PHA02875 2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGIS--PIKLAMKFRD-----------------------SEAIKLLMK 56 (413)
T ss_pred CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCC--HHHHHHHcCC-----------------------HHHHHHHHh
Confidence 579999999999999999999999999999888888 8888876654 455666666
Q ss_pred cCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHHhccCCCcccccchhhHHHHHHHHhcCCchHHHHHHHcCCCCC
Q 001613 175 KTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLHDSDLGAKEKTTIYECVIREALALGRATKLQRAVKRNSTPT 254 (1044)
Q Consensus 175 ~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~~~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~ 254 (1044)
+|++
T Consensus 57 ~ga~---------------------------------------------------------------------------- 60 (413)
T PHA02875 57 HGAI---------------------------------------------------------------------------- 60 (413)
T ss_pred CCCC----------------------------------------------------------------------------
Confidence 5543
Q ss_pred cchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhc
Q 001613 255 TSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKT 334 (1044)
Q Consensus 255 ~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~ 334 (1044)
++.. +..+.||||+|+..|+.++|++|++. |++++ +..+..|.||||+|+..
T Consensus 61 ------------------------~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~-~~~~~-~~~~~~g~tpL~~A~~~ 112 (413)
T PHA02875 61 ------------------------PDVK--YPDIESELHDAVEEGDVKAVEELLDL-GKFAD-DVFYKDGMTPLHLATIL 112 (413)
T ss_pred ------------------------cccc--CCCcccHHHHHHHCCCHHHHHHHHHc-CCccc-ccccCCCCCHHHHHHHh
Confidence 3322 55778999999999999999999998 77763 45577899999999999
Q ss_pred CCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHH
Q 001613 335 SMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVC 414 (1044)
Q Consensus 335 g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~i 414 (1044)
| +.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.++
T Consensus 113 ~--------~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~TpL~~A~~~g~~ei 183 (413)
T PHA02875 113 K--------KLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC-LDIEDCCGCTPLIIAMAKGDIAI 183 (413)
T ss_pred C--------CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHH
Confidence 9 99999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred HHHHHHCCCCcccccCCCC-cHHHHHHHcChHHHHHHhhh
Q 001613 415 AEVLLRWGANSEVLNLRRE-RPIDFAKSQDMRFLLKAANT 453 (1044)
Q Consensus 415 VklLL~~GAdin~~d~~G~-TpLh~Aa~~g~~~Ll~~~~~ 453 (1044)
+++|+++||+++..+..|. ||+|+|+..|..++++.+..
T Consensus 184 v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~ 223 (413)
T PHA02875 184 CKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK 223 (413)
T ss_pred HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999998875 78888988776555554333
No 29
>PHA02798 ankyrin-like protein; Provisional
Probab=100.00 E-value=2.6e-32 Score=327.31 Aligned_cols=287 Identities=19% Similarity=0.224 Sum_probs=235.4
Q ss_pred CHHHHHHHHhCCCCCccccccccCCCCChHHHHHHH--cCCHHHHHHHHHcCCCCCcccCCCCCchHHHHHHhCCCccee
Q 001613 69 SVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAE--SHTARCVELLLKKRARTDIRSKDGRRLLPLELSLSSSRMDVI 146 (1044)
Q Consensus 69 ~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~--~G~~eiVklLL~~GAdvn~~d~~G~T~lpLh~Aa~~g~~eIv 146 (1044)
.++.|+.|+..+ ++|.. . .|.|+++.+.. .++.++|++|+++|||+|.++..|.| |||.|+.+.
T Consensus 17 ~~~~v~~ll~~~-----~~~~~-~-~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~T--pL~~~~~n~----- 82 (489)
T PHA02798 17 KLSTVKLLIKSC-----NPNEI-V-NEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYST--PLCTILSNI----- 82 (489)
T ss_pred cHHHHHHHHhcC-----Chhhh-c-ccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCC--hHHHHHHhH-----
Confidence 466999999764 44544 3 57788774443 45899999999999999999999998 888886531
Q ss_pred cCCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHHhccCCCcccccchh
Q 001613 147 WNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLHDSDLGAKEKTTI 226 (1044)
Q Consensus 147 ~~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~~~~adin~~~~~~~ 226 (1044)
+...+..+++++|+++|++++. ++..
T Consensus 83 -------------~~~~~~~~iv~~Ll~~GadiN~---------------------------------------~d~~-- 108 (489)
T PHA02798 83 -------------KDYKHMLDIVKILIENGADINK---------------------------------------KNSD-- 108 (489)
T ss_pred -------------HhHHhHHHHHHHHHHCCCCCCC---------------------------------------CCCC--
Confidence 1123457889999988877653 3333
Q ss_pred hHHHHHHHHhcCCchHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCC---HHH
Q 001613 227 YECVIREALALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQAGD---EDV 303 (1044)
Q Consensus 227 ~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~Aa~~G~---~ei 303 (1044)
|.||||+|+..+.... ...+++|+++|++++.. |..|.||||+|+..|+ .++
T Consensus 109 ------------G~TpLh~a~~~~~~~~-----------~~iv~~Ll~~Gadvn~~--d~~g~tpL~~a~~~~~~~~~~v 163 (489)
T PHA02798 109 ------------GETPLYCLLSNGYINN-----------LEILLFMIENGADTTLL--DKDGFTMLQVYLQSNHHIDIEI 163 (489)
T ss_pred ------------cCcHHHHHHHcCCcCh-----------HHHHHHHHHcCCCcccc--CCCCCcHHHHHHHcCCcchHHH
Confidence 9999999999874311 12299999999999876 9999999999999998 999
Q ss_pred HHHHHHcCCCCCCCCCCC-CCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHH-------HHHHc
Q 001613 304 IEILLKSKNIDINDADAD-ADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALH-------IAAGS 375 (1044)
Q Consensus 304 Vk~LL~~~gadvn~n~~d-~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh-------~Aa~~ 375 (1044)
+++|++. |+++ +..+ ..|.||||.++..+. ...+.+++++|+++|++++..+..|.|+++ ++...
T Consensus 164 v~~Ll~~-gadi--n~~~~~~~~t~Lh~~~~~~~----~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~ 236 (489)
T PHA02798 164 IKLLLEK-GVDI--NTHNNKEKYDTLHCYFKYNI----DRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKR 236 (489)
T ss_pred HHHHHHh-CCCc--ccccCcCCCcHHHHHHHhcc----ccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhccc
Confidence 9999999 9999 6664 578999999987541 112789999999999999999999999877 24556
Q ss_pred CCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHHHcChHHHHHHhhhcC
Q 001613 376 GNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLLKAANTCH 455 (1044)
Q Consensus 376 g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~Ll~~~~~n~ 455 (1044)
++.+++++|+. +++ +|.+|..|+||||+|+.+|+.+++++|+++|||+|.+|..|+||||+|+.++...+++.+....
T Consensus 237 ~~~~i~~~l~~-~~d-vN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~ 314 (489)
T PHA02798 237 FKKNILDFIFS-YID-INQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKK 314 (489)
T ss_pred chHHHHHHHHh-cCC-CCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccC
Confidence 78899988776 577 9999999999999999999999999999999999999999999999999999988888655444
Q ss_pred cc
Q 001613 456 TN 457 (1044)
Q Consensus 456 ~d 457 (1044)
.+
T Consensus 315 ~~ 316 (489)
T PHA02798 315 PN 316 (489)
T ss_pred CC
Confidence 44
No 30
>PHA02791 ankyrin-like protein; Provisional
Probab=100.00 E-value=2.2e-32 Score=302.61 Aligned_cols=219 Identities=19% Similarity=0.147 Sum_probs=190.7
Q ss_pred cccccchHHHHHHHcCCHHHHHHHHhCCCCCccccccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCch
Q 001613 53 QTAIVTKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLL 132 (1044)
Q Consensus 53 ~~~~~~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T~l 132 (1044)
.+..+.||||+|+..|+.+++++|++.| +++|.. +|.||||+|+..|+.++|++|+++|++++.+|..|+|
T Consensus 26 ~D~~G~TpLh~Aa~~g~~eiv~~Ll~~g----a~~n~~---d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~T-- 96 (284)
T PHA02791 26 ADVHGHSALYYAIADNNVRLVCTLLNAG----ALKNLL---ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNT-- 96 (284)
T ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHCc----CCCcCC---CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC--
Confidence 4567899999999999999999999998 777765 4689999999999999999999999999999999998
Q ss_pred HHHHHHhCCCcceecCCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHH
Q 001613 133 PLELSLSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILV 212 (1044)
Q Consensus 133 pLh~Aa~~g~~eIv~~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~ 212 (1044)
|||+|+..|+ .+++++|+++|++++.
T Consensus 97 pLh~Aa~~g~-----------------------~eivk~Ll~~gadin~------------------------------- 122 (284)
T PHA02791 97 ALYYAVDSGN-----------------------MQTVKLFVKKNWRLMF------------------------------- 122 (284)
T ss_pred HHHHHHHcCC-----------------------HHHHHHHHHCCCCcCc-------------------------------
Confidence 8888876654 6779999999887642
Q ss_pred hccCCCcccccchhhHHHHHHHHhcCCchHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHH
Q 001613 213 LHDSDLGAKEKTTIYECVIREALALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPL 292 (1044)
Q Consensus 213 ~~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpL 292 (1044)
++.. ++.||||+|+..|+.++ +++|++.+++..- ...|.|||
T Consensus 123 --------~~~~-------------g~~TpL~~Aa~~g~~ei--------------vk~LL~~~~~~~d---~~~g~TpL 164 (284)
T PHA02791 123 --------YGKT-------------GWKTSFYHAVMLNDVSI--------------VSYFLSEIPSTFD---LAILLSCI 164 (284)
T ss_pred --------cCCC-------------CCcHHHHHHHHcCCHHH--------------HHHHHhcCCcccc---cccCccHH
Confidence 1111 23699999999999988 9999998765421 13589999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchH-HHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHH
Q 001613 293 ILATQAGDEDVIEILLKSKNIDINDADADADGNSA-LHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHI 371 (1044)
Q Consensus 293 h~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~Tp-Lh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~ 371 (1044)
|+|+..|+.++|++||+. |+++ +.+|..|.|| ||+|+..| +.++|++|+++|+++|.+|..| |+|
T Consensus 165 h~Aa~~g~~eiv~lLL~~-gAd~--n~~d~~g~t~~L~~Aa~~~--------~~e~v~lLl~~Ga~in~~~~~~-~~l-- 230 (284)
T PHA02791 165 HITIKNGHVDMMILLLDY-MTST--NTNNSLLFIPDIKLAIDNK--------DLEMLQALFKYDINIYSVNLEN-VLL-- 230 (284)
T ss_pred HHHHHcCCHHHHHHHHHC-CCCC--CcccCCCCChHHHHHHHcC--------CHHHHHHHHHCCCCCccCcccC-ccC--
Confidence 999999999999999999 9999 8899999987 99999999 9999999999999999999855 666
Q ss_pred HHHcCCHHHHHHHHhcCCC
Q 001613 372 AAGSGNSQALEDLIRKEPD 390 (1044)
Q Consensus 372 Aa~~g~~eiVklLL~~gad 390 (1044)
++.|++++||++.++
T Consensus 231 ----~~~e~~~~ll~~~~~ 245 (284)
T PHA02791 231 ----DDAEIAKMIIEKHVE 245 (284)
T ss_pred ----CCHHHHHHHHHhhhh
Confidence 899999999998776
No 31
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.8e-32 Score=266.60 Aligned_cols=146 Identities=28% Similarity=0.408 Sum_probs=140.2
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCC
Q 001613 284 TDKKVGPPLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNK 363 (1044)
Q Consensus 284 ~d~~G~TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~ 363 (1044)
.|..|+||||+||..|+.++|+.|+.+.|+|+ |..+..|.|+||||+..| ..+|+++|+++|+.++.+|.
T Consensus 68 kDdaGWtPlhia~s~g~~evVk~Ll~r~~adv--na~tn~G~T~LHyAagK~--------r~eIaqlLle~ga~i~~kD~ 137 (226)
T KOG4412|consen 68 KDDAGWTPLHIAASNGNDEVVKELLNRSGADV--NATTNGGQTCLHYAAGKG--------RLEIAQLLLEKGALIRIKDK 137 (226)
T ss_pred ccccCCchhhhhhhcCcHHHHHHHhcCCCCCc--ceecCCCcceehhhhcCC--------hhhHHHHHHhcCCCCccccc
Confidence 38899999999999999999999999989999 999999999999999999 99999999999999999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHHH
Q 001613 364 LGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKS 441 (1044)
Q Consensus 364 ~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~~G~TpLh~Aa~ 441 (1044)
.|.||||-|+.-|..+++++|+..++. +|.+|+.|+||||.|...|+.++..+|+++|||+...|+.| ||+-.|+-
T Consensus 138 ~~qtplHRAAavGklkvie~Li~~~a~-~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~ 213 (226)
T KOG4412|consen 138 QGQTPLHRAAAVGKLKVIEYLISQGAP-LNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACN 213 (226)
T ss_pred ccCchhHHHHhccchhhHHHHHhcCCC-CCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHH
Confidence 999999999999999999999999998 99999999999999999999999999999999999999998 99887753
No 32
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-32 Score=268.65 Aligned_cols=192 Identities=26% Similarity=0.304 Sum_probs=171.1
Q ss_pred HHHHHHcCC-CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHH
Q 001613 269 IELLQLFGA-VANGSCTDKKVGPPLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRI 347 (1044)
Q Consensus 269 velLl~~GA-din~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~i 347 (1044)
++-|++... .++.. .|.+|+|||||||..|+.+||.+||+..++.+ |.+|..|+||||+|+..| +.++
T Consensus 19 veel~~s~~kSL~~r-~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~--ddkDdaGWtPlhia~s~g--------~~ev 87 (226)
T KOG4412|consen 19 VEELIQSDPKSLNAR-DDQDGRTPLHWACSFGHVEIVYFLLSQPNVKP--DDKDDAGWTPLHIAASNG--------NDEV 87 (226)
T ss_pred HHHHHhcChhhhhcc-ccccCCceeeeeeecCchhHHHHHHhcCCCCC--CCccccCCchhhhhhhcC--------cHHH
Confidence 555555444 34443 35699999999999999999999998656666 889999999999999999 9999
Q ss_pred HHHHHhc-CCeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc
Q 001613 348 VGILLKH-GAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSE 426 (1044)
Q Consensus 348 VklLLe~-GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin 426 (1044)
|+.|+.. |+|+|++++.|.|+||||+..|..+|+++|+++|+. ++++|..|.||||.|+.-|.++++++|+..||.+|
T Consensus 88 Vk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~-i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n 166 (226)
T KOG4412|consen 88 VKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL-IRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLN 166 (226)
T ss_pred HHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCC-CcccccccCchhHHHHhccchhhHHHHHhcCCCCC
Confidence 9999987 999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred cccCCCCcHHHHHHHcChHHHHHHhhhcCccccccchhhhhhhhcCChhhhhhHHHhhhcccCCCCccccccCCceeeee
Q 001613 427 VLNLRRERPIDFAKSQDMRFLLKAANTCHTNLAFLNQEKQNASLESDEDISGTCEALLSMVDDNSNTERICSGTKIEVCK 506 (1044)
Q Consensus 427 ~~d~~G~TpLh~Aa~~g~~~Ll~~~~~n~~d~~~~~~~l~~A~~~~~~~i~~~~~~l~~~~d~~~~~~~~~~~~~~~t~L 506 (1044)
.+|+.|+||||.|.-
T Consensus 167 ~qDk~G~TpL~~al~----------------------------------------------------------------- 181 (226)
T KOG4412|consen 167 TQDKYGFTPLHHALA----------------------------------------------------------------- 181 (226)
T ss_pred cccccCccHHHHHHh-----------------------------------------------------------------
Confidence 999999999999942
Q ss_pred cccccCcccccccccccccccccccCCCccccccccc
Q 001613 507 YYESHSGCIRGSKCFYALGEEQHRKMNPGMCMIHAST 543 (1044)
Q Consensus 507 ~~Aa~~G~~eivk~Ll~~GAd~~~~d~~G~tpLh~aa 543 (1044)
.||.++..+|+++|||+...|+.| |++..+.
T Consensus 182 -----e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~ 212 (226)
T KOG4412|consen 182 -----EGHPDVAVLLVRAGADTDREDKEG-TALRIAC 212 (226)
T ss_pred -----ccCchHHHHHHHhccceeeccccC-chHHHHH
Confidence 246677788999999999999988 8876654
No 33
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.97 E-value=1.2e-30 Score=287.06 Aligned_cols=221 Identities=26% Similarity=0.345 Sum_probs=177.5
Q ss_pred HHHHcCCHHHHHHHHhCCCC--CccccccccCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCccc---CCCCCchHHHH
Q 001613 63 VSCIFDSVSCATSLVNGDLG--PVALVNEVEESSGMTALHLAAESHTARCVELLLKK-RARTDIRS---KDGRRLLPLEL 136 (1044)
Q Consensus 63 ~AA~~G~~eivk~LL~~g~~--~~adiN~~d~~~G~TpLH~Aa~~G~~eiVklLL~~-GAdvn~~d---~~G~T~lpLh~ 136 (1044)
-||..|.+..+..|+.+... +..-++. +. +|.|||-+||++||.++|+||+++ +|++.... -+|.+
T Consensus 10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~-~~-~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~------ 81 (615)
T KOG0508|consen 10 NAARDGKLQLLAKLLINSSNEEIISLIGE-VQ-NGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGET------ 81 (615)
T ss_pred HHhhhhhHHHHHHHHhCCchHHHHHHhcc-cc-CCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcc------
Confidence 56777777766655543200 0011222 23 788999999999999999999995 88776542 23333
Q ss_pred HHhCCCcceecCCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHHhccC
Q 001613 137 SLSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLHDS 216 (1044)
Q Consensus 137 Aa~~g~~eIv~~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~~~~a 216 (1044)
-.|..||..|+..|++++|++|+++|++++..
T Consensus 82 --------------IegappLWaAsaAGHl~vVk~L~~~ga~VN~t---------------------------------- 113 (615)
T KOG0508|consen 82 --------------IEGAPPLWAASAAGHLEVVKLLLRRGASVNDT---------------------------------- 113 (615)
T ss_pred --------------cCCCchhhHHhccCcHHHHHHHHHhcCccccc----------------------------------
Confidence 12777888888899999999999999887642
Q ss_pred CCcccccchhhHHHHHHHHhcCCchHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHHHH
Q 001613 217 DLGAKEKTTIYECVIREALALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILAT 296 (1044)
Q Consensus 217 din~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~Aa 296 (1044)
... ..|||.-||.-|+.++ +++|+++|+|+++. +..|.|-||+||
T Consensus 114 -----T~T--------------NStPLraACfDG~lei--------------vKyLvE~gad~~Ia--nrhGhTcLmIa~ 158 (615)
T KOG0508|consen 114 -----TRT--------------NSTPLRAACFDGHLEI--------------VKYLVEHGADPEIA--NRHGHTCLMIAC 158 (615)
T ss_pred -----ccc--------------CCccHHHHHhcchhHH--------------HHHHHHcCCCCccc--ccCCCeeEEeee
Confidence 111 6789999999999988 99999999999886 889999999999
Q ss_pred HcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcC
Q 001613 297 QAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSG 376 (1044)
Q Consensus 297 ~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g 376 (1044)
..|+.+|+++|++. |+|+ |.++..|+|+||.+++.| +++|+++|+++|+.++ +|..|.|||..|+..|
T Consensus 159 ykGh~~I~qyLle~-gADv--n~ks~kGNTALH~caEsG--------~vdivq~Ll~~ga~i~-~d~~GmtPL~~Aa~tG 226 (615)
T KOG0508|consen 159 YKGHVDIAQYLLEQ-GADV--NAKSYKGNTALHDCAESG--------SVDIVQLLLKHGAKID-VDGHGMTPLLLAAVTG 226 (615)
T ss_pred ccCchHHHHHHHHh-CCCc--chhcccCchHHHhhhhcc--------cHHHHHHHHhCCceee-ecCCCCchHHHHhhhc
Confidence 99999999999999 9999 899999999999999999 9999999999999885 5566999999999999
Q ss_pred CHHHHHHHHh
Q 001613 377 NSQALEDLIR 386 (1044)
Q Consensus 377 ~~eiVklLL~ 386 (1044)
+.++|++|+.
T Consensus 227 ~~~iVe~L~~ 236 (615)
T KOG0508|consen 227 HTDIVERLLQ 236 (615)
T ss_pred chHHHHHHhc
Confidence 9999999984
No 34
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.97 E-value=2.2e-30 Score=284.87 Aligned_cols=215 Identities=17% Similarity=0.209 Sum_probs=131.0
Q ss_pred HHHHHHHhcCHHHHHHHHHhhccccccccccccccccchHHHHHHHcCCHHHHHHHHhCCC-----CCccccccccCCCC
Q 001613 21 LIINSLLEDDKKQLINVSKRHFIDNSLDNADQQTAIVTKLLRVSCIFDSVSCATSLVNGDL-----GPVALVNEVEESSG 95 (1044)
Q Consensus 21 ~ll~AIl~dD~~~L~~li~~~~~~~~l~~~~~~~~~~~T~Lh~AA~~G~~eivk~LL~~g~-----~~~adiN~~d~~~G 95 (1044)
-.+++...+....+..++... .++.+.+-.+....+.|||.+||++|+.++|++|+++.. +.....+--.. .|
T Consensus 7 ~~~naa~~g~l~~l~~ll~~~-s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~I-eg 84 (615)
T KOG0508|consen 7 VVINAARDGKLQLLAKLLINS-SNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETI-EG 84 (615)
T ss_pred HHHHHhhhhhHHHHHHHHhCC-chHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCccc-CC
Confidence 344555566665555555321 111122233345667899999999999999999998430 00122233344 78
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCchHHHHHHhCCCcceec----------CCCCCchhHHHHHHhcCC
Q 001613 96 MTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLLPLELSLSSSRMDVIW----------NPDEYSVEDLVVILGQKN 165 (1044)
Q Consensus 96 ~TpLH~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T~lpLh~Aa~~g~~eIv~----------~~~~~~~t~L~~Ai~~g~ 165 (1044)
.+||-.|+..||++||++|+++||++|....-..| ||-.||..|+.+|++ ..+..|.|.||.|+..|+
T Consensus 85 appLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNSt--PLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh 162 (615)
T KOG0508|consen 85 APPLWAASAAGHLEVVKLLLRRGASVNDTTRTNST--PLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGH 162 (615)
T ss_pred CchhhHHhccCcHHHHHHHHHhcCccccccccCCc--cHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCc
Confidence 89999999999999999999999999887776666 777777766655542 122334444444444444
Q ss_pred HHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHHhccCCCcccccchhhHHHHHHHHhcCCchHHHH
Q 001613 166 LTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLHDSDLGAKEKTTIYECVIREALALGRATKLQR 245 (1044)
Q Consensus 166 ~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~~~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~ 245 (1044)
.+|+++|++.|+|++. ++.. |.|+||.
T Consensus 163 ~~I~qyLle~gADvn~---------------------------------------ks~k--------------GNTALH~ 189 (615)
T KOG0508|consen 163 VDIAQYLLEQGADVNA---------------------------------------KSYK--------------GNTALHD 189 (615)
T ss_pred hHHHHHHHHhCCCcch---------------------------------------hccc--------------CchHHHh
Confidence 4444444444444432 2222 6666666
Q ss_pred HHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 001613 246 AVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQAGDEDVIEILLK 309 (1044)
Q Consensus 246 A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~ 309 (1044)
+++.|+.++ +++|+.+|+.++. |..|.|||..|+..|+.++|++|++
T Consensus 190 caEsG~vdi--------------vq~Ll~~ga~i~~---d~~GmtPL~~Aa~tG~~~iVe~L~~ 236 (615)
T KOG0508|consen 190 CAESGSVDI--------------VQLLLKHGAKIDV---DGHGMTPLLLAAVTGHTDIVERLLQ 236 (615)
T ss_pred hhhcccHHH--------------HHHHHhCCceeee---cCCCCchHHHHhhhcchHHHHHHhc
Confidence 666666665 6666666666654 4556666666666666666666664
No 35
>PHA02792 ankyrin-like protein; Provisional
Probab=99.97 E-value=4.5e-29 Score=295.35 Aligned_cols=333 Identities=14% Similarity=0.081 Sum_probs=234.2
Q ss_pred ccchHHHH-HHHcCCHHHHHHHHhCCCCCccccccccCCCCChHHHHHHH-cCCHHHHHHHHHcCCCCCcccCCCCCchH
Q 001613 56 IVTKLLRV-SCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAE-SHTARCVELLLKKRARTDIRSKDGRRLLP 133 (1044)
Q Consensus 56 ~~~T~Lh~-AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~-~G~~eiVklLL~~GAdvn~~d~~G~T~lp 133 (1044)
++.+++|+ |+..|++|+|++|+.+| |++|.++. .|.||||+|+. .|+.|||++||++|||++..+..|.| |
T Consensus 70 ~~~~~~~~~~s~n~~lElvk~LI~~G----AdvN~~~n-~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~--~ 142 (631)
T PHA02792 70 NDFDIFEYLCSDNIDIELLKLLISKG----LEINSIKN-GINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYK--I 142 (631)
T ss_pred CCccHHHHHHHhcccHHHHHHHHHcC----CCcccccC-CCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcc--h
Confidence 34557875 45688999999999998 99999999 89999999976 69999999999999999999999999 7
Q ss_pred HHHHHhCCCc-------c------eecCCCCCchhHHHHHHhcC-------CHHHHHHHHHcCCCcchHHHHhhhcCcHH
Q 001613 134 LELSLSSSRM-------D------VIWNPDEYSVEDLVVILGQK-------NLTTVKLLSQKTKELDEVAYANAVGGRIV 193 (1044)
Q Consensus 134 Lh~Aa~~g~~-------e------Iv~~~~~~~~t~L~~Ai~~g-------~~eivklLl~~gadi~~~~~~~a~~g~~~ 193 (1044)
|+..+..... + ++...+..|.|+||.|+..+ +.+++++|+++|++++.... .|.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~----~g~-- 216 (631)
T PHA02792 143 IIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTY----REH-- 216 (631)
T ss_pred hhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCC----CCC--
Confidence 7665542211 0 22234556999999999999 89999999999999865321 122
Q ss_pred HHHHHHHHHhhh----hhhHHHHhccCCCcccccchhhHHHHHHHHhcCCchHHHHHHHcCCCCCcchhHHHHHhhHHHH
Q 001613 194 ALAALLIVAADK----VNESILVLHDSDLGAKEKTTIYECVIREALALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEI 269 (1044)
Q Consensus 194 ~l~~ll~~a~~~----~~~~~l~~~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~~~~~l~~~v 269 (1044)
+++..+.... ...++++.. .... .....+....+..-... + +..+ ....|
T Consensus 217 --t~l~~~~~~~~i~~ei~~~L~~~-~~~~-~~~~~~l~~y~~~~~~~---~---------~~~i----------d~~iv 270 (631)
T PHA02792 217 --TTLYYYVDKCDIKREIFDALFDS-NYSG-NELMNILSNYLRKQYRN---K---------NHKI----------DNYIV 270 (631)
T ss_pred --hHHHHHHHcccchHHHHHHHHhc-cccc-cchHhHHHHHHHHHhcc---C---------ccCc----------cHHHH
Confidence 2222222222 112222221 1111 11111111111110000 0 0000 01123
Q ss_pred HHHHHcCCCCCCc--cC---------------CCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCCCCCchHHHH
Q 001613 270 ELLQLFGAVANGS--CT---------------DKKVGPPLILATQAG--DEDVIEILLKSKNIDINDADADADGNSALHC 330 (1044)
Q Consensus 270 elLl~~GAdin~~--~~---------------d~~G~TpLh~Aa~~G--~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~ 330 (1044)
..|++.+---+.. .. +..-+-.||.-...+ +.+++++|+++ |+++ . ......+++.
T Consensus 271 ~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~-Ga~~--~--r~~~~n~~~~ 345 (631)
T PHA02792 271 DKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDE-GATL--Y--RFKHINKYFQ 345 (631)
T ss_pred HHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHC-CCcc--c--cCCcchHHHH
Confidence 3333332210000 00 011123567767776 78899999999 9988 3 1235667999
Q ss_pred HHhcCCCcccccchHHHHHHHHhcCCeeeecCCCC--CcHHHHHHHcCCH---HHHHHHHhcCCCCcccCCCCCCcHHHH
Q 001613 331 ALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLG--LTALHIAAGSGNS---QALEDLIRKEPDCINLKTIMMETPLFF 405 (1044)
Q Consensus 331 Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G--~TpLh~Aa~~g~~---eiVklLL~~gad~in~~d~~G~TpLh~ 405 (1044)
|+..| +.++|++|+++||+++.+|..| .||||+|+..... +++++|+++|++ +|.+|..|+||||+
T Consensus 346 Aa~~g--------n~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD-IN~kD~~G~TPLh~ 416 (631)
T PHA02792 346 KFDNR--------DPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDD-INKIDKHGRSILYY 416 (631)
T ss_pred HHHcC--------CHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCc-cccccccCcchHHH
Confidence 99999 9999999999999999999875 6999998877665 468899999999 99999999999999
Q ss_pred HHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHHH
Q 001613 406 AVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKS 441 (1044)
Q Consensus 406 Aa~~g~~~iVklLL~~GAdin~~d~~G~TpLh~Aa~ 441 (1044)
|+..++.+++++|+++||++|.+|..|+||||+|+.
T Consensus 417 Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~ 452 (631)
T PHA02792 417 CIESHSVSLVEWLIDNGADINITTKYGSTCIGICVI 452 (631)
T ss_pred HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999976
No 36
>PHA02792 ankyrin-like protein; Provisional
Probab=99.97 E-value=1.1e-28 Score=292.23 Aligned_cols=346 Identities=13% Similarity=0.021 Sum_probs=236.5
Q ss_pred CCCChhHHHHHH-HHHhcCHHHHHHHHHhhccccccccccccccccchHHHHHHH-cCCHHHHHHHHhCCCCCcc-----
Q 001613 13 SVTDLETTLIIN-SLLEDDKKQLINVSKRHFIDNSLDNADQQTAIVTKLLRVSCI-FDSVSCATSLVNGDLGPVA----- 85 (1044)
Q Consensus 13 s~~d~e~~~ll~-AIl~dD~~~L~~li~~~~~~~~l~~~~~~~~~~~T~Lh~AA~-~G~~eivk~LL~~g~~~~a----- 85 (1044)
..+.+++.++.. +....|++.+.-++..+...+. .++.+.++||+|+. .|++|+|++||+.|....+
T Consensus 66 ~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~------~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g 139 (631)
T PHA02792 66 YKNINDFDIFEYLCSDNIDIELLKLLISKGLEINS------IKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYG 139 (631)
T ss_pred cCccCCccHHHHHHHhcccHHHHHHHHHcCCCccc------ccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccC
Confidence 445555543322 3344778888777776554332 23346899999976 6999999999999843111
Q ss_pred ---------------------------ccccccCCCCChHHHHHHHcC-------CHHHHHHHHHcCCCCCcccCCCCCc
Q 001613 86 ---------------------------LVNEVEESSGMTALHLAAESH-------TARCVELLLKKRARTDIRSKDGRRL 131 (1044)
Q Consensus 86 ---------------------------diN~~d~~~G~TpLH~Aa~~G-------~~eiVklLL~~GAdvn~~d~~G~T~ 131 (1044)
.+|..|. .|.||||+|+.++ +.+++++||++||+++.+|..|.|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t- 217 (631)
T PHA02792 140 YKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDR-MGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHT- 217 (631)
T ss_pred cchhhhhcccccccchhhhccccccccccccCCC-CCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCCh-
Confidence 2455666 8999999999999 899999999999999999999999
Q ss_pred hHHHHHHhCCCc--ceecCC----CC--CchhHHH----HHHhc----CCHHHHHHHHHcCCCcchHHHHhhhcCcHHHH
Q 001613 132 LPLELSLSSSRM--DVIWNP----DE--YSVEDLV----VILGQ----KNLTTVKLLSQKTKELDEVAYANAVGGRIVAL 195 (1044)
Q Consensus 132 lpLh~Aa~~g~~--eIv~~~----~~--~~~t~L~----~Ai~~----g~~eivklLl~~gadi~~~~~~~a~~g~~~~l 195 (1044)
|||+|+.+.++ ||+..+ .. .....|. .--+. =+..+|..|++.+...+...
T Consensus 218 -~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~------------ 284 (631)
T PHA02792 218 -TLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILE------------ 284 (631)
T ss_pred -HHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhh------------
Confidence 99999998843 332100 00 0000000 00000 01224444443332111100
Q ss_pred HHHHHHHhhhhhhHHHHhccCCCcccccchhhHHHHHHHHhcCCchHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHc
Q 001613 196 AALLIVAADKVNESILVLHDSDLGAKEKTTIYECVIREALALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLF 275 (1044)
Q Consensus 196 ~~ll~~a~~~~~~~~l~~~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~ 275 (1044)
.+ +...........+.... ..-+..||.-..++.... ..+++|++.
T Consensus 285 --------------~~-------~~~~~~~~~~~~~~~~~-~~~q~~l~~Yl~~~~v~i------------eiIK~LId~ 330 (631)
T PHA02792 285 --------------LC-------NSLRNNIIISSILKRYT-DSIQDLLSEYVSYHTVYI------------NVIKCMIDE 330 (631)
T ss_pred --------------hh-------hhhhhhhHHHHHHHHHh-HHHHHHHHHHHhcCCccH------------HHHHHHHHC
Confidence 00 00000000000100000 113445666666554332 349999999
Q ss_pred CCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCC--chHHHHHHhcCCCcccccchHHHHHHHHh
Q 001613 276 GAVANGSCTDKKVGPPLILATQAGDEDVIEILLKSKNIDINDADADADG--NSALHCALKTSMGLSQHILQNRIVGILLK 353 (1044)
Q Consensus 276 GAdin~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G--~TpLh~Aa~~g~~~~~~~~~~~iVklLLe 353 (1044)
|++.+. ......++.|+..|+.++|++|+++ |+++ +.+|.+| .||||+|+.... ....+++++|++
T Consensus 331 Ga~~~r----~~~~n~~~~Aa~~gn~eIVelLIs~-GADI--N~kD~~g~~~TpLh~A~~n~~-----~~v~~IlklLIs 398 (631)
T PHA02792 331 GATLYR----FKHINKYFQKFDNRDPKVVEYILKN-GNVV--VEDDDNIINIMPLFPTLSIHE-----SDVLSILKLCKP 398 (631)
T ss_pred CCcccc----CCcchHHHHHHHcCCHHHHHHHHHc-CCch--hhhcCCCCChhHHHHHHHhcc-----HhHHHHHHHHHh
Confidence 999752 2356689999999999999999999 9999 7777765 699999877651 113467899999
Q ss_pred cCCeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHH--c--------CCHHHHHHHHHCCC
Q 001613 354 HGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVK--N--------DHMVCAEVLLRWGA 423 (1044)
Q Consensus 354 ~GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~--~--------g~~~iVklLL~~GA 423 (1044)
+|||+|.+|..|+||||+|+..++.+++++|+++|++ +|.+|..|.||||+|+. . ...+++++|+++|.
T Consensus 399 ~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GAD-IN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p 477 (631)
T PHA02792 399 YIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGAD-INITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLP 477 (631)
T ss_pred cCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999 99999999999999976 2 23677999999998
Q ss_pred Ccc
Q 001613 424 NSE 426 (1044)
Q Consensus 424 din 426 (1044)
+++
T Consensus 478 ~i~ 480 (631)
T PHA02792 478 TIE 480 (631)
T ss_pred Chh
Confidence 875
No 37
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.96 E-value=1.5e-29 Score=290.74 Aligned_cols=212 Identities=25% Similarity=0.276 Sum_probs=148.8
Q ss_pred cccchHHHHHHHcCCHHHHHHHHhC-CCCCccccccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCchH
Q 001613 55 AIVTKLLRVSCIFDSVSCATSLVNG-DLGPVALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLLP 133 (1044)
Q Consensus 55 ~~~~T~Lh~AA~~G~~eivk~LL~~-g~~~~adiN~~d~~~G~TpLH~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T~lp 133 (1044)
+....-++.|+.+|.++-|+.|++. | .++|..|. +|.|+||+||.+++++++++||++|||+|...-+.
T Consensus 42 d~~~~~~v~A~q~G~l~~v~~lve~~g----~~v~~~D~-~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l----- 111 (600)
T KOG0509|consen 42 DSSLDDIVKATQYGELETVKELVESEG----ESVNNPDR-EGVTLLHWAAINNRLDVARYLISHGADVNAIGGVL----- 111 (600)
T ss_pred chhhhhhhhHhhcchHHHHHHHHhhcC----cCCCCCCc-CCccceeHHHHcCcHHHHHHHHHcCCCccccCCCC-----
Confidence 3346778899999999999999988 6 78999999 99999999999999999999999999988654211
Q ss_pred HHHHHhCCCcceecCCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHHh
Q 001613 134 LELSLSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVL 213 (1044)
Q Consensus 134 Lh~Aa~~g~~eIv~~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~~ 213 (1044)
T Consensus 112 -------------------------------------------------------------------------------- 111 (600)
T KOG0509|consen 112 -------------------------------------------------------------------------------- 111 (600)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCcccccchhhHHHHHHHHhcCCchHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHH
Q 001613 214 HDSDLGAKEKTTIYECVIREALALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLI 293 (1044)
Q Consensus 214 ~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh 293 (1044)
+.||||||+++|+..+ +++|+++||+++.. |..|.+|||
T Consensus 112 -------------------------~stPLHWAar~G~~~v--------------v~lLlqhGAdpt~~--D~~G~~~lH 150 (600)
T KOG0509|consen 112 -------------------------GSTPLHWAARNGHISV--------------VDLLLQHGADPTLK--DKQGLTPLH 150 (600)
T ss_pred -------------------------CCCcchHHHHcCcHHH--------------HHHHHHcCCCCcee--cCCCCcHHH
Confidence 3333444444443333 55555566665554 667777777
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecC-CCCCcHHHHH
Q 001613 294 LATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQN-KLGLTALHIA 372 (1044)
Q Consensus 294 ~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d-~~G~TpLh~A 372 (1044)
.|++.|+.-+|-|||.+ ++|+ +.+|.+|+||||+|+..| ....+++||+.|++++.+| ..|+||||+|
T Consensus 151 la~~~~~~~~vayll~~-~~d~--d~~D~~grTpLmwAaykg--------~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa 219 (600)
T KOG0509|consen 151 LAAQFGHTALVAYLLSK-GADI--DLRDNNGRTPLMWAAYKG--------FALFVRRLLKFGASLLLTDDNHGNTPLHWA 219 (600)
T ss_pred HHHHhCchHHHHHHHHh-cccC--CCcCCCCCCHHHHHHHhc--------ccHHHHHHHHhcccccccccccCCchHHHH
Confidence 77777777777777776 6666 667777777777777766 4444677777777776666 6677777777
Q ss_pred HHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHc
Q 001613 373 AGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKN 409 (1044)
Q Consensus 373 a~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~ 409 (1044)
+..|+..++.+|++.|++ .+.+|.+|.||+.+|.+.
T Consensus 220 ~~~gN~~~v~Ll~~g~~~-~d~~~~~g~tp~~LA~~~ 255 (600)
T KOG0509|consen 220 VVGGNLTAVKLLLEGGAD-LDKTNTNGKTPFDLAQER 255 (600)
T ss_pred HhcCCcceEehhhhcCCc-ccccccCCCCHHHHHHHh
Confidence 777777777733344444 666676677777777665
No 38
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.95 E-value=2.8e-28 Score=280.24 Aligned_cols=176 Identities=26% Similarity=0.361 Sum_probs=131.6
Q ss_pred chHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHc-CCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 001613 240 ATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLF-GAVANGSCTDKKVGPPLILATQAGDEDVIEILLKSKNIDINDA 318 (1044)
Q Consensus 240 ~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~-GAdin~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~~gadvn~n 318 (1044)
..-+..|++.|..+. ++.|++. |.+++.. |.+|.|+||+|+.+++++++++|+++ |+|| |
T Consensus 45 ~~~~v~A~q~G~l~~--------------v~~lve~~g~~v~~~--D~~g~tlLHWAAiNNrl~v~r~li~~-gadv--n 105 (600)
T KOG0509|consen 45 LDDIVKATQYGELET--------------VKELVESEGESVNNP--DREGVTLLHWAAINNRLDVARYLISH-GADV--N 105 (600)
T ss_pred hhhhhhHhhcchHHH--------------HHHHHhhcCcCCCCC--CcCCccceeHHHHcCcHHHHHHHHHc-CCCc--c
Confidence 345566667776665 7777777 6666654 77777777777777777777777777 7777 5
Q ss_pred CCC-CCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCC
Q 001613 319 DAD-ADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTI 397 (1044)
Q Consensus 319 ~~d-~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~ 397 (1044)
..+ .-+.||||||+++| ++.+|++|+++|||++.+|..|.||||+|+..|+.-+|-+||.++++ +|.+|.
T Consensus 106 ~~gG~l~stPLHWAar~G--------~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d-~d~~D~ 176 (600)
T KOG0509|consen 106 AIGGVLGSTPLHWAARNG--------HISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGAD-IDLRDN 176 (600)
T ss_pred ccCCCCCCCcchHHHHcC--------cHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhccc-CCCcCC
Confidence 555 56677777777777 77777777777777777777777777777777777777777777776 777777
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCCccccc-CCCCcHHHHHHHcC
Q 001613 398 MMETPLFFAVKNDHMVCAEVLLRWGANSEVLN-LRRERPIDFAKSQD 443 (1044)
Q Consensus 398 ~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d-~~G~TpLh~Aa~~g 443 (1044)
+|+||||+|+..|+...+.+|++.|++++.+| .+|.||||+|+..|
T Consensus 177 ~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~g 223 (600)
T KOG0509|consen 177 NGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGG 223 (600)
T ss_pred CCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcC
Confidence 77777777777777777777777777777776 67777777776543
No 39
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.95 E-value=1.1e-26 Score=247.39 Aligned_cols=180 Identities=16% Similarity=0.180 Sum_probs=159.9
Q ss_pred hcCCchHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCC
Q 001613 236 ALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQAG--DEDVIEILLKSKNI 313 (1044)
Q Consensus 236 ~~gg~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~Aa~~G--~~eiVk~LL~~~ga 313 (1044)
...+.+||++|+..++.+. ++.|+..+ +. .+..|.||||+|+..+ +.+++++||+. |+
T Consensus 18 ~~~~~~pL~~A~~~~~~~~--------------vk~Li~~~---n~--~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~-ga 77 (209)
T PHA02859 18 FYRYCNPLFYYVEKDDIEG--------------VKKWIKFV---ND--CNDLYETPIFSCLEKDKVNVEILKFLIEN-GA 77 (209)
T ss_pred hhccCcHHHHHHHhCcHHH--------------HHHHHHhh---hc--cCccCCCHHHHHHHcCCCCHHHHHHHHHC-CC
Confidence 4458999999999999888 99998753 33 3778999999999865 89999999999 99
Q ss_pred CCCCCCCC-CCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHH--cCCHHHHHHHHhcCCC
Q 001613 314 DINDADAD-ADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAG--SGNSQALEDLIRKEPD 390 (1044)
Q Consensus 314 dvn~n~~d-~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~--~g~~eiVklLL~~gad 390 (1044)
++ +.++ ..|.||||+|+..+. ..+.+++++|+++|+++|.+|..|.||||+|+. .++.+++++|+++|++
T Consensus 78 dv--n~~~~~~g~TpLh~a~~~~~-----~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad 150 (209)
T PHA02859 78 DV--NFKTRDNNLSALHHYLSFNK-----NVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS 150 (209)
T ss_pred CC--CccCCCCCCCHHHHHHHhCc-----cccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC
Confidence 99 8886 589999999886430 116899999999999999999999999999876 4689999999999999
Q ss_pred CcccCCCCCCcHHHH-HHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHHHcC
Q 001613 391 CINLKTIMMETPLFF-AVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQD 443 (1044)
Q Consensus 391 ~in~~d~~G~TpLh~-Aa~~g~~~iVklLL~~GAdin~~d~~G~TpLh~Aa~~g 443 (1044)
+|.+|..|.||||. |+..++.+++++|+++|++++.+|..|+||||+|+.++
T Consensus 151 -in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~ 203 (209)
T PHA02859 151 -FLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN 203 (209)
T ss_pred -cccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence 99999999999995 56788999999999999999999999999999999876
No 40
>PHA02795 ankyrin-like protein; Provisional
Probab=99.95 E-value=9.5e-27 Score=267.07 Aligned_cols=215 Identities=17% Similarity=0.077 Sum_probs=148.2
Q ss_pred cCCHH-HHHHHHhCCCCCccccccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC------cccCCCCCchHHHHHHh
Q 001613 67 FDSVS-CATSLVNGDLGPVALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTD------IRSKDGRRLLPLELSLS 139 (1044)
Q Consensus 67 ~G~~e-ivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~G~~eiVklLL~~GAdvn------~~d~~G~T~lpLh~Aa~ 139 (1044)
.+-++ ..++++.+| +++|..+. +| +|+..+..|++++|+++|+++| .++..++| +||+|+.
T Consensus 58 ~~~~~~~~~~~~~~~----~~i~~~~~-~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~--~L~~~~~ 125 (437)
T PHA02795 58 CDPVDVLYDYFRIHR----DNIDQYIV-DR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQD--LLLYYLS 125 (437)
T ss_pred CCHHHHHHHHHHHcC----cchhhhhh-hh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccH--HHHHHHH
Confidence 34555 467888988 89999988 77 9999999999999999999988 55555555 5555554
Q ss_pred CCCcceecCCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHHhccCCCc
Q 001613 140 SSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLHDSDLG 219 (1044)
Q Consensus 140 ~g~~eIv~~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~~~~adin 219 (1044)
++. |+.++|++|+++|
T Consensus 126 n~~---------------------n~~eiV~~LI~~G------------------------------------------- 141 (437)
T PHA02795 126 NAY---------------------VEIDIVDFMVDHG------------------------------------------- 141 (437)
T ss_pred hcC---------------------CCHHHHHHHHHCC-------------------------------------------
Confidence 321 3344455555544
Q ss_pred ccccchhhHHHHHHHHhcCCchHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcC
Q 001613 220 AKEKTTIYECVIREALALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQAG 299 (1044)
Q Consensus 220 ~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~Aa~~G 299 (1044)
|+++.. ++.||||+|+..|
T Consensus 142 ---------------------------------------------------------ADIn~~----~~~t~lh~A~~~~ 160 (437)
T PHA02795 142 ---------------------------------------------------------AVIYKI----ECLNAYFRGICKK 160 (437)
T ss_pred ---------------------------------------------------------CCCCCC----CCCCHHHHHHHcC
Confidence 444432 3356777777777
Q ss_pred CHHHHHHHHHcCCCCCCCCCC-----CCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHH
Q 001613 300 DEDVIEILLKSKNIDINDADA-----DADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAG 374 (1044)
Q Consensus 300 ~~eiVk~LL~~~gadvn~n~~-----d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~ 374 (1044)
+.++|++|+++ |++.+ +.. +..+.|++|.|+..+ +.+++++|+++||++|.+|..|.||||+|+.
T Consensus 161 ~~eIVk~Lls~-Ga~~~-n~~~~~l~~~~~~t~l~~a~~~~--------~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~ 230 (437)
T PHA02795 161 ESSVVEFILNC-GIPDE-NDVKLDLYKIIQYTRGFLVDEPT--------VLEIYKLCIPYIEDINQLDAGGRTLLYRAIY 230 (437)
T ss_pred cHHHHHHHHhc-CCccc-ccccchhhhhhccchhHHHHhcC--------HHHHHHHHHhCcCCcCcCCCCCCCHHHHHHH
Confidence 77777777776 65331 221 133667777777766 7777777777777777777777777777777
Q ss_pred cCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcC--------CHHHHHHHHHCCCCccccc
Q 001613 375 SGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKND--------HMVCAEVLLRWGANSEVLN 429 (1044)
Q Consensus 375 ~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g--------~~~iVklLL~~GAdin~~d 429 (1044)
.|+.++|++|+++|++ +|.+|..|+||||+|+.+| +.+++++|+++|++++..+
T Consensus 231 ~g~~eiVelLL~~GAd-IN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~ 292 (437)
T PHA02795 231 AGYIDLVSWLLENGAN-VNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIK 292 (437)
T ss_pred cCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchh
Confidence 7777777777777776 7777777777777777766 3577777777777776543
No 41
>PHA02795 ankyrin-like protein; Provisional
Probab=99.94 E-value=7.4e-26 Score=259.77 Aligned_cols=219 Identities=16% Similarity=0.104 Sum_probs=156.4
Q ss_pred HHHHcCCHHHHHHHHhCCCCCccccc------cccCCCCChHHHHHHH--cCCHHHHHHHHHcCCCCCcccCCCCCchHH
Q 001613 63 VSCIFDSVSCATSLVNGDLGPVALVN------EVEESSGMTALHLAAE--SHTARCVELLLKKRARTDIRSKDGRRLLPL 134 (1044)
Q Consensus 63 ~AA~~G~~eivk~LL~~g~~~~adiN------~~d~~~G~TpLH~Aa~--~G~~eiVklLL~~GAdvn~~d~~G~T~lpL 134 (1044)
+||..+..|++++|+++| +++| .++. .++|+||+|+. +|+.++|++||++|||++.. ++.| ||
T Consensus 83 ~~~~~~~k~~~~~l~s~~----~~~~~~~~~~~~~~-~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t--~l 153 (437)
T PHA02795 83 LFAYITYKDIISALVSKN----YMEDIFSIIIKNCN-SVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLN--AY 153 (437)
T ss_pred HHhhcchHHHHHHHHhcc----cccchhhhhhhccc-cccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCC--HH
Confidence 999999999999999999 8888 8888 89999999999 99999999999999999874 3455 66
Q ss_pred HHHHhCCCcceecCCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHHhc
Q 001613 135 ELSLSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLH 214 (1044)
Q Consensus 135 h~Aa~~g~~eIv~~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~~~ 214 (1044)
|.|+.. ++.+++++|+++|++....
T Consensus 154 h~A~~~-----------------------~~~eIVk~Lls~Ga~~~n~-------------------------------- 178 (437)
T PHA02795 154 FRGICK-----------------------KESSVVEFILNCGIPDEND-------------------------------- 178 (437)
T ss_pred HHHHHc-----------------------CcHHHHHHHHhcCCccccc--------------------------------
Confidence 666554 4577799999998743210
Q ss_pred cCCCcccccchhhHHHHHHHHhcCCchHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHH
Q 001613 215 DSDLGAKEKTTIYECVIREALALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLIL 294 (1044)
Q Consensus 215 ~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~ 294 (1044)
+.+++ .+..+.|++|.
T Consensus 179 ------------------------~~~~l----------------------------------------~~~~~~t~l~~ 194 (437)
T PHA02795 179 ------------------------VKLDL----------------------------------------YKIIQYTRGFL 194 (437)
T ss_pred ------------------------ccchh----------------------------------------hhhhccchhHH
Confidence 00000 01234467777
Q ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHH
Q 001613 295 ATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAG 374 (1044)
Q Consensus 295 Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~ 374 (1044)
|+..++.+++++|+++ |+++ |.+|..|.||||+|+..| +.+++++|+++||++|.+|..|+||||+|+.
T Consensus 195 a~~~~~~eIve~LIs~-GADI--N~kD~~G~TpLh~Aa~~g--------~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~ 263 (437)
T PHA02795 195 VDEPTVLEIYKLCIPY-IEDI--NQLDAGGRTLLYRAIYAG--------YIDLVSWLLENGANVNAVMSNGYTCLDVAVD 263 (437)
T ss_pred HHhcCHHHHHHHHHhC-cCCc--CcCCCCCCCHHHHHHHcC--------CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence 7777777777777777 7777 677777777777777777 7777777777777777777777777777777
Q ss_pred cCC--------HHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc
Q 001613 375 SGN--------SQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSE 426 (1044)
Q Consensus 375 ~g~--------~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin 426 (1044)
.|+ .+++++|+++|++ ++.... |.+.. ...+.++++.|+++++.++
T Consensus 264 ~g~~~~~~~~~~eIvelLL~~gad-I~~~~~---~~~~~--~~~n~~~ik~lI~y~~~ld 317 (437)
T PHA02795 264 RGSVIARRETHLKILEILLREPLS-IDCIKL---AILNN--TIENHDVIKLCIKYFMMVD 317 (437)
T ss_pred cCCcccccccHHHHHHHHHhCCCC-CCchhH---Hhhhc--ccchHHHHHHHHHHHHhcc
Confidence 663 5777777777776 555332 22211 1125677777777665443
No 42
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.93 E-value=3.7e-25 Score=235.77 Aligned_cols=71 Identities=14% Similarity=0.164 Sum_probs=46.9
Q ss_pred chHHHHHHHcCCHHHHHHHHhCCCCCccccccccCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCCccc-CCCCCchHH
Q 001613 58 TKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAESH--TARCVELLLKKRARTDIRS-KDGRRLLPL 134 (1044)
Q Consensus 58 ~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~G--~~eiVklLL~~GAdvn~~d-~~G~T~lpL 134 (1044)
.||||+|+..|++++|+.|++. +|..|. .|.||||+|+.++ +.++|++||++|+|+|.++ ..|+| ||
T Consensus 22 ~~pL~~A~~~~~~~~vk~Li~~-------~n~~~~-~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~T--pL 91 (209)
T PHA02859 22 CNPLFYYVEKDDIEGVKKWIKF-------VNDCND-LYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLS--AL 91 (209)
T ss_pred CcHHHHHHHhCcHHHHHHHHHh-------hhccCc-cCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCC--HH
Confidence 6677777777777777777653 355666 6777777777643 6777777777777776665 35555 55
Q ss_pred HHHH
Q 001613 135 ELSL 138 (1044)
Q Consensus 135 h~Aa 138 (1044)
|+|+
T Consensus 92 h~a~ 95 (209)
T PHA02859 92 HHYL 95 (209)
T ss_pred HHHH
Confidence 5544
No 43
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.93 E-value=5.8e-27 Score=275.04 Aligned_cols=310 Identities=17% Similarity=0.167 Sum_probs=266.0
Q ss_pred ccchHHHHHHHcCCHHHHHHHHhCCCCCccccccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCcc-cCCCCCchHH
Q 001613 56 IVTKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTDIR-SKDGRRLLPL 134 (1044)
Q Consensus 56 ~~~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~G~~eiVklLL~~GAdvn~~-d~~G~T~lpL 134 (1044)
...|+|-.||..|+.|+|++|+.+| +++..+|. .|.+||..|+-.||..+|+.||++.|++++. |+.+.| +|
T Consensus 756 n~~t~LT~acaggh~e~vellv~rg----aniehrdk-kgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt--~l 828 (2131)
T KOG4369|consen 756 NIKTNLTSACAGGHREEVELLVVRG----ANIEHRDK-KGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDT--ML 828 (2131)
T ss_pred cccccccccccCccHHHHHHHHHhc----cccccccc-ccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCc--eE
Confidence 3489999999999999999999999 99999999 9999999999999999999999999999885 677777 88
Q ss_pred HHHHhCCCcceec----------CCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhh
Q 001613 135 ELSLSSSRMDVIW----------NPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAAD 204 (1044)
Q Consensus 135 h~Aa~~g~~eIv~----------~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~ 204 (1044)
.+||..|+.+++. ..+-...+||.+|...|..++|++|+..|++++
T Consensus 829 Slacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseIn------------------------ 884 (2131)
T KOG4369|consen 829 SLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEIN------------------------ 884 (2131)
T ss_pred EEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccc------------------------
Confidence 8888888877642 011113455555555555555555555555554
Q ss_pred hhhhHHHHhccCCCcccccchhhHHHHHHHHhcCCchHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccC
Q 001613 205 KVNESILVLHDSDLGAKEKTTIYECVIREALALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCT 284 (1044)
Q Consensus 205 ~~~~~~l~~~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~ 284 (1044)
.+... +-|..||++|..+|+... +..|++.|.|+|...
T Consensus 885 ---------------SrtgS------------klgisPLmlatmngh~~a--------------t~~ll~~gsdiNaqI- 922 (2131)
T KOG4369|consen 885 ---------------SRTGS------------KLGISPLMLATMNGHQAA--------------TLSLLQPGSDINAQI- 922 (2131)
T ss_pred ---------------ccccc------------ccCcchhhhhhhccccHH--------------HHHHhcccchhcccc-
Confidence 33222 228899999999999988 999999999999874
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeec--C
Q 001613 285 DKKVGPPLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQ--N 362 (1044)
Q Consensus 285 d~~G~TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~--d 362 (1044)
..+-+|+|-+|+..|..++|.+||.. .+++ ..+-+.|.|||+-++..| .+++-++||..|||+|+. -
T Consensus 923 eTNrnTaltla~fqgr~evv~lLLa~-~anv--ehRaktgltplme~AsgG--------yvdvg~~li~~gad~nasPvp 991 (2131)
T KOG4369|consen 923 ETNRNTALTLALFQGRPEVVFLLLAA-QANV--EHRAKTGLTPLMEMASGG--------YVDVGNLLIAAGADTNASPVP 991 (2131)
T ss_pred ccccccceeeccccCcchHHHHHHHH-hhhh--hhhcccCCcccchhhcCC--------ccccchhhhhcccccccCCCC
Confidence 55778999999999999999999998 7777 888899999999999999 999999999999999873 2
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHHHc
Q 001613 363 KLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQ 442 (1044)
Q Consensus 363 ~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~~G~TpLh~Aa~~ 442 (1044)
....|+|-+++..||...|..|+...+. +..+++.|.|+|.+|+..|++..+.+|++++||++..|+...++++.|.+.
T Consensus 992 ~T~dtalti~a~kGh~kfv~~lln~~at-v~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S~~maafRK 1070 (2131)
T KOG4369|consen 992 NTWDTALTIPANKGHTKFVPKLLNGDAT-VRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQDNRTNSRTMAAFRK 1070 (2131)
T ss_pred CcCCccceeecCCCchhhhHHhhCCccc-eecccCCCCcccchhccCCccccchHHhhcccChhhhhcccccccHHHHHh
Confidence 3445999999999999999999999888 999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHH
Q 001613 443 DMRFLLKA 450 (1044)
Q Consensus 443 g~~~Ll~~ 450 (1044)
|+..|+++
T Consensus 1071 gh~~iVk~ 1078 (2131)
T KOG4369|consen 1071 GHFAIVKK 1078 (2131)
T ss_pred chhheecc
Confidence 98888874
No 44
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.92 E-value=3.7e-25 Score=259.98 Aligned_cols=310 Identities=20% Similarity=0.186 Sum_probs=239.4
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCchHHHHHHhCCCcceecCCCCCchhHHHHHHhcCCHHHHHHHH
Q 001613 94 SGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLLPLELSLSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLS 173 (1044)
Q Consensus 94 ~G~TpLH~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T~lpLh~Aa~~g~~eIv~~~~~~~~t~L~~Ai~~g~~eivklLl 173 (1044)
+-.|+|-.||.+||.|+|++|+.+|+++..+|+.|.+ ||.+| +..||..+|+.|+
T Consensus 756 n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~--plIma-----------------------atagh~tvV~~ll 810 (2131)
T KOG4369|consen 756 NIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFV--PLIMA-----------------------ATAGHITVVQDLL 810 (2131)
T ss_pred cccccccccccCccHHHHHHHHHhcccccccccccch--hhhhh-----------------------cccCchHHHHHHH
Confidence 5679999999999999999999999999999988877 55544 4455566788888
Q ss_pred HcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHHhccCCCcccccchhhHHHHHHHHhcCCchHHHHHHHcCCCC
Q 001613 174 QKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLHDSDLGAKEKTTIYECVIREALALGRATKLQRAVKRNSTP 253 (1044)
Q Consensus 174 ~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~~~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~ 253 (1044)
.+.++++.. .++ .+.|+|.+||.-|..+
T Consensus 811 k~ha~veaQ--------------------------------------sdr--------------tkdt~lSlacsggr~~ 838 (2131)
T KOG4369|consen 811 KAHADVEAQ--------------------------------------SDR--------------TKDTMLSLACSGGRTR 838 (2131)
T ss_pred hhhhhhhhh--------------------------------------ccc--------------ccCceEEEecCCCcch
Confidence 777666431 112 2778888888888888
Q ss_pred CcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHh
Q 001613 254 TTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALK 333 (1044)
Q Consensus 254 ~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~ 333 (1044)
+ +++|+..|++-.-. +-...|||.+|...|.+++|++||.. |+.||.....+.|-.||++|..
T Consensus 839 v--------------velLl~~gankehr--nvsDytPlsla~Sggy~~iI~~llS~-GseInSrtgSklgisPLmlatm 901 (2131)
T KOG4369|consen 839 V--------------VELLLNAGANKEHR--NVSDYTPLSLARSGGYTKIIHALLSS-GSEINSRTGSKLGISPLMLATM 901 (2131)
T ss_pred H--------------HHHHHHhhcccccc--chhhcCchhhhcCcchHHHHHHHhhc-ccccccccccccCcchhhhhhh
Confidence 8 88888888876543 66677888888888888888888888 8888656667788888888888
Q ss_pred cCCCcccccchHHHHHHHHhcCCeeeec-CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCH
Q 001613 334 TSMGLSQHILQNRIVGILLKHGAIVSQQ-NKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHM 412 (1044)
Q Consensus 334 ~g~~~~~~~~~~~iVklLLe~GAdvn~~-d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~ 412 (1044)
+| |...++.|++.|.|+|+. ..+.+|+|-+|+..|..++|.+||...+. +..+-+.|.|||+-++..|++
T Consensus 902 ng--------h~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~an-vehRaktgltplme~AsgGyv 972 (2131)
T KOG4369|consen 902 NG--------HQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQAN-VEHRAKTGLTPLMEMASGGYV 972 (2131)
T ss_pred cc--------ccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhh-hhhhcccCCcccchhhcCCcc
Confidence 88 888888888888888863 34567888888888888888888888887 888888888888888888888
Q ss_pred HHHHHHHHCCCCccccc--CCCCcHHHHHHHcChHHHHHHhhhcCccccccchhhhhhhhcCChhhhhhHHHhhhcccCC
Q 001613 413 VCAEVLLRWGANSEVLN--LRRERPIDFAKSQDMRFLLKAANTCHTNLAFLNQEKQNASLESDEDISGTCEALLSMVDDN 490 (1044)
Q Consensus 413 ~iVklLL~~GAdin~~d--~~G~TpLh~Aa~~g~~~Ll~~~~~n~~d~~~~~~~l~~A~~~~~~~i~~~~~~l~~~~d~~ 490 (1044)
++-++||..|||+|+-- ....|+|-+++..|+...+..+.....
T Consensus 973 dvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~a---------------------------------- 1018 (2131)
T KOG4369|consen 973 DVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDA---------------------------------- 1018 (2131)
T ss_pred ccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCcc----------------------------------
Confidence 88888888888887642 345577877777775554442221110
Q ss_pred CCccccccCCceeeeecccccCcccccccccccccccccccCCCccccccccc
Q 001613 491 SNTERICSGTKIEVCKYYESHSGCIRGSKCFYALGEEQHRKMNPGMCMIHAST 543 (1044)
Q Consensus 491 ~~~~~~~~~~~~~t~L~~Aa~~G~~eivk~Ll~~GAd~~~~d~~G~tpLh~aa 543 (1044)
.....+.+|.|+|++|+..|++..+..|+++++|++..|+...+++..+-
T Consensus 1019 ---tv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S~~maaf 1068 (2131)
T KOG4369|consen 1019 ---TVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQDNRTNSRTMAAF 1068 (2131)
T ss_pred ---ceecccCCCCcccchhccCCccccchHHhhcccChhhhhcccccccHHHH
Confidence 01112345568888999999999999999999998888888777766554
No 45
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.91 E-value=6.2e-24 Score=267.36 Aligned_cols=256 Identities=16% Similarity=0.070 Sum_probs=192.2
Q ss_pred ccccchHHHHHHHcCCHHHHHHHHhCCCCCccccccccCCCCChHHH-HHHHcCCHHHHHHHHHcCCCCCcccCCCCCch
Q 001613 54 TAIVTKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALH-LAAESHTARCVELLLKKRARTDIRSKDGRRLL 132 (1044)
Q Consensus 54 ~~~~~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH-~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T~l 132 (1044)
-....+.|+.||..|+.+.|+.+++.+. ..++|..|. .|+|||| .|+.+++.+++++|+++|+ .+..|.|
T Consensus 14 ~~~~~~~~l~A~~~g~~~~v~~lL~~~~--~~~in~~d~-~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T-- 84 (743)
T TIGR00870 14 LSDEEKAFLPAAERGDLASVYRDLEEPK--KLNINCPDR-LGRSALFVAAIENENLELTELLLNLSC----RGAVGDT-- 84 (743)
T ss_pred CCHHHHHHHHHHHcCCHHHHHHHhcccc--ccCCCCcCc-cchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChH--
Confidence 3455899999999999999999998821 288999999 9999999 8999999999999999998 5677877
Q ss_pred HHHHHHhCCCcceecCCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHH
Q 001613 133 PLELSLSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILV 212 (1044)
Q Consensus 133 pLh~Aa~~g~~eIv~~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~ 212 (1044)
|||+|+..++. +...++.++...+.+...
T Consensus 85 ~Lh~A~~~~~~--------------------~v~~ll~~l~~~~~~~~~------------------------------- 113 (743)
T TIGR00870 85 LLHAISLEYVD--------------------AVEAILLHLLAAFRKSGP------------------------------- 113 (743)
T ss_pred HHHHHHhccHH--------------------HHHHHHHHHhhcccccCc-------------------------------
Confidence 88888763320 011223333322211100
Q ss_pred hccCCCcccccchhhHHHHHHHHhcCCchHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHH
Q 001613 213 LHDSDLGAKEKTTIYECVIREALALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPL 292 (1044)
Q Consensus 213 ~~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpL 292 (1044)
..+ . .+.+ ......|.|||
T Consensus 114 ----------------------------~~~-----------------------------~---~~~~-~~~~~~G~TpL 132 (743)
T TIGR00870 114 ----------------------------LEL-----------------------------A---NDQY-TSEFTPGITAL 132 (743)
T ss_pred ----------------------------hhh-----------------------------h---cccc-ccccCCCCcHH
Confidence 000 0 0000 01134688888
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCC--------------CCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCee
Q 001613 293 ILATQAGDEDVIEILLKSKNIDINDADA--------------DADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIV 358 (1044)
Q Consensus 293 h~Aa~~G~~eiVk~LL~~~gadvn~n~~--------------d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdv 358 (1044)
|+|+.+|+.++|++||++ |+++ +.+ ...|.||||+|+..| +.+++++|+++|+|+
T Consensus 133 hlAa~~~~~eiVklLL~~-GAdv--~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~--------~~~iv~lLl~~gadi 201 (743)
T TIGR00870 133 HLAAHRQNYEIVKLLLER-GASV--PARACGDFFVKSQGVDSFYHGESPLNAAACLG--------SPSIVALLSEDPADI 201 (743)
T ss_pred HHHHHhCCHHHHHHHHhC-CCCC--CcCcCCchhhcCCCCCcccccccHHHHHHHhC--------CHHHHHHHhcCCcch
Confidence 888888888888888888 8888 433 236899999999999 999999999999999
Q ss_pred eecCCCCCcHHHHHHHcC---------CHHHHHHHHhcCCC--Cc----ccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q 001613 359 SQQNKLGLTALHIAAGSG---------NSQALEDLIRKEPD--CI----NLKTIMMETPLFFAVKNDHMVCAEVLLRWGA 423 (1044)
Q Consensus 359 n~~d~~G~TpLh~Aa~~g---------~~eiVklLL~~gad--~i----n~~d~~G~TpLh~Aa~~g~~~iVklLL~~GA 423 (1044)
|.+|..|+||||+|+..+ ...+.+++++.++. +. +..|.+|.||||+|+..|+.+++++|++.++
T Consensus 202 n~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~ 281 (743)
T TIGR00870 202 LTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKY 281 (743)
T ss_pred hhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHH
Confidence 999999999999999987 23355666655444 13 6789999999999999999999999999777
Q ss_pred CcccccCCCCcHHHHHHH
Q 001613 424 NSEVLNLRRERPIDFAKS 441 (1044)
Q Consensus 424 din~~d~~G~TpLh~Aa~ 441 (1044)
+......+...|.+.+..
T Consensus 282 ~~kk~~a~~~~~~~~~~~ 299 (743)
T TIGR00870 282 KQKKFVAWPNGQQLLSLY 299 (743)
T ss_pred hcceeeccCcchHhHhhh
Confidence 666666667777776654
No 46
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.89 E-value=8.3e-24 Score=213.45 Aligned_cols=140 Identities=22% Similarity=0.174 Sum_probs=127.0
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCC
Q 001613 285 DKKVGPPLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKL 364 (1044)
Q Consensus 285 d~~G~TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~ 364 (1044)
|..|.|||+||+..|++.+|++||+. |+|+ ....+...|+|.+|+..| ..+||++||..+.|+|..|.+
T Consensus 157 De~GfTpLiWAaa~G~i~vV~fLL~~-GAdp--~~lgk~resALsLAt~gg--------ytdiV~lLL~r~vdVNvyDwN 225 (296)
T KOG0502|consen 157 DEFGFTPLIWAAAKGHIPVVQFLLNS-GADP--DALGKYRESALSLATRGG--------YTDIVELLLTREVDVNVYDWN 225 (296)
T ss_pred cccCchHhHHHHhcCchHHHHHHHHc-CCCh--hhhhhhhhhhHhHHhcCC--------hHHHHHHHHhcCCCcceeccC
Confidence 88999999999999999999999998 9999 778888889999999988 899999999999999999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHH
Q 001613 365 GLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPID 437 (1044)
Q Consensus 365 G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~~G~TpLh 437 (1044)
|-|||.||+..|+.++|+.||+.|++ ++..+..|.+++..|+..|+. +|+..|++-++.+.+|+.-+||+|
T Consensus 226 GgTpLlyAvrgnhvkcve~Ll~sGAd-~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~~ 296 (296)
T KOG0502|consen 226 GGTPLLYAVRGNHVKCVESLLNSGAD-VTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPLH 296 (296)
T ss_pred CCceeeeeecCChHHHHHHHHhcCCC-cccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCCC
Confidence 99999999999999999999999998 999999999999999999988 888889888888888888888775
No 47
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.89 E-value=9.8e-23 Score=236.32 Aligned_cols=243 Identities=26% Similarity=0.273 Sum_probs=195.1
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCC---------CccccccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCC
Q 001613 60 LLRVSCIFDSVSCATSLVNGDLG---------PVALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRR 130 (1044)
Q Consensus 60 ~Lh~AA~~G~~eivk~LL~~g~~---------~~adiN~~d~~~G~TpLH~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T 130 (1044)
=|.-|+..|+++.+..|++...+ ....+|..|- +|.|+||.||.+|+.+++++|+++.+-++..+..|.+
T Consensus 6 el~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~-~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~ 84 (854)
T KOG0507|consen 6 ELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDY-SGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGIL 84 (854)
T ss_pred hHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCc-cchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcc
Confidence 37789999999999999964221 2256888899 9999999999999999999999998877776655554
Q ss_pred chHHHHHHhCCCcceecCCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHH
Q 001613 131 LLPLELSLSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESI 210 (1044)
Q Consensus 131 ~lpLh~Aa~~g~~eIv~~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~ 210 (1044)
|||+|+..|+ .+++++|+..+
T Consensus 85 --plhlaaw~g~-----------------------~e~vkmll~q~---------------------------------- 105 (854)
T KOG0507|consen 85 --PLHLAAWNGN-----------------------LEIVKMLLLQT---------------------------------- 105 (854)
T ss_pred --eEEehhhcCc-----------------------chHHHHHHhcc----------------------------------
Confidence 5565555544 44455555443
Q ss_pred HHhccCCCcccccchhhHHHHHHHHhcCCchHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCc
Q 001613 211 LVLHDSDLGAKEKTTIYECVIREALALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGP 290 (1044)
Q Consensus 211 l~~~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~T 290 (1044)
..+|.. ...|.|
T Consensus 106 ------------------------------------------------------------------d~~na~--~~e~~t 117 (854)
T KOG0507|consen 106 ------------------------------------------------------------------DILNAV--NIENET 117 (854)
T ss_pred ------------------------------------------------------------------cCCCcc--cccCcC
Confidence 333332 557788
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCe--------eeecC
Q 001613 291 PLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAI--------VSQQN 362 (1044)
Q Consensus 291 pLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAd--------vn~~d 362 (1044)
|||.|++.||.++|.+||++ |+|. -.++..+.|+|-+|++.| ..++|+.|++...+ -..++
T Consensus 118 plhlaaqhgh~dvv~~Ll~~-~adp--~i~nns~~t~ldlA~qfg--------r~~Vvq~ll~~~~~~~~~~~~~~~~~~ 186 (854)
T KOG0507|consen 118 PLHLAAQHGHLEVVFYLLKK-NADP--FIRNNSKETVLDLASRFG--------RAEVVQMLLQKKFPVQSSLRVGDIKRP 186 (854)
T ss_pred ccchhhhhcchHHHHHHHhc-CCCc--cccCcccccHHHHHHHhh--------hhHHHHHHhhhccchhhcccCCCCCCC
Confidence 88888888888888888888 8887 777888888888888888 78888888765222 12355
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHHHc
Q 001613 363 KLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQ 442 (1044)
Q Consensus 363 ~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~~G~TpLh~Aa~~ 442 (1044)
..+.+|||+|+.+|+.++++.|++.|.+ +|.....| |+||.|+..|..++|.+|++.|.+..++|.+|+|+|++-...
T Consensus 187 ~~~~~plHlaakngh~~~~~~ll~ag~d-in~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~ 264 (854)
T KOG0507|consen 187 FPAIYPLHLAAKNGHVECMQALLEAGFD-INYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDL 264 (854)
T ss_pred CCCcCCcchhhhcchHHHHHHHHhcCCC-cccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhc
Confidence 6788999999999999999999999999 99999877 999999999999999999999999999999999999988776
Q ss_pred C
Q 001613 443 D 443 (1044)
Q Consensus 443 g 443 (1044)
-
T Consensus 265 ~ 265 (854)
T KOG0507|consen 265 Q 265 (854)
T ss_pred c
Confidence 5
No 48
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.88 E-value=2.9e-22 Score=253.95 Aligned_cols=173 Identities=24% Similarity=0.297 Sum_probs=136.5
Q ss_pred CchHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 001613 239 RATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQAGDEDVIEILLKSKNIDINDA 318 (1044)
Q Consensus 239 g~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~~gadvn~n 318 (1044)
..++|+.|+..|+.++ ++.|+..|+++|.. |..|.||||+|+..|+.++|++|+++ |+++ |
T Consensus 525 ~~~~L~~Aa~~g~~~~--------------l~~Ll~~G~d~n~~--d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gadi--n 585 (823)
T PLN03192 525 MASNLLTVASTGNAAL--------------LEELLKAKLDPDIG--DSKGRTPLHIAASKGYEDCVLVLLKH-ACNV--H 585 (823)
T ss_pred chhHHHHHHHcCCHHH--------------HHHHHHCCCCCCCC--CCCCCCHHHHHHHcChHHHHHHHHhc-CCCC--C
Confidence 3567778888777766 78888888887765 77888888888888888888888887 8877 7
Q ss_pred CCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCC
Q 001613 319 DADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIM 398 (1044)
Q Consensus 319 ~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~ 398 (1044)
.+|.+|+||||+|+..| +.+++++|++.++..+ ...|.++||.|+..|+.+++++|+++|++ +|.+|.+
T Consensus 586 ~~d~~G~TpL~~A~~~g--------~~~iv~~L~~~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad-in~~d~~ 654 (823)
T PLN03192 586 IRDANGNTALWNAISAK--------HHKIFRILYHFASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLN-VDSEDHQ 654 (823)
T ss_pred CcCCCCCCHHHHHHHhC--------CHHHHHHHHhcCcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCC
Confidence 77888888888888888 8888888887776544 23466788888888888888888888887 8888888
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCcccccCCC-CcHHHHHHH
Q 001613 399 METPLFFAVKNDHMVCAEVLLRWGANSEVLNLRR-ERPIDFAKS 441 (1044)
Q Consensus 399 G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~~G-~TpLh~Aa~ 441 (1044)
|+||||+|+..|+.+++++|+++|||++..|..| .||++++..
T Consensus 655 G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~ 698 (823)
T PLN03192 655 GATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELREL 698 (823)
T ss_pred CCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH
Confidence 8888888888888888888888888888888777 788877754
No 49
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.88 E-value=1.9e-22 Score=203.74 Aligned_cols=177 Identities=26% Similarity=0.295 Sum_probs=168.0
Q ss_pred CchHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 001613 239 RATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQAGDEDVIEILLKSKNIDINDA 318 (1044)
Q Consensus 239 g~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~~gadvn~n 318 (1044)
|+.+++.++-.++... +..++..|+..|.. +-.+.+|+.+++...+++++..|.++ .+ |
T Consensus 96 g~~~~~v~ap~~s~~k--------------~sttltN~~rgnev--s~~p~s~~slsVhql~L~~~~~~~~n---~V--N 154 (296)
T KOG0502|consen 96 GWSALLVAAPCGSVDK--------------VSTTLTNGARGNEV--SLMPWSPLSLSVHQLHLDVVDLLVNN---KV--N 154 (296)
T ss_pred hhhhhhhcCCCCCcce--------------eeeeecccccCCcc--ccccCChhhHHHHHHHHHHHHHHhhc---cc--c
Confidence 8888998888888777 88889999998875 88999999999999999999988877 56 8
Q ss_pred CCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCC
Q 001613 319 DADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIM 398 (1044)
Q Consensus 319 ~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~ 398 (1044)
..|..|.|||.||+..| ++.+|++||+.|||++..-+...|+|.+|+..|..+||++||..+.+ +|.-|-+
T Consensus 155 ~~De~GfTpLiWAaa~G--------~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vd-VNvyDwN 225 (296)
T KOG0502|consen 155 ACDEFGFTPLIWAAAKG--------HIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVD-VNVYDWN 225 (296)
T ss_pred CccccCchHhHHHHhcC--------chHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCC-cceeccC
Confidence 99999999999999999 99999999999999999999999999999999999999999999999 9999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHHHcChH
Q 001613 399 METPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMR 445 (1044)
Q Consensus 399 G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~~G~TpLh~Aa~~g~~ 445 (1044)
|-|||-||++.||.+|++.||+.|||++..+..|++++++|+..|..
T Consensus 226 GgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr 272 (296)
T KOG0502|consen 226 GGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR 272 (296)
T ss_pred CCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999965
No 50
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.87 E-value=4e-22 Score=250.96 Aligned_cols=246 Identities=16% Similarity=0.069 Sum_probs=184.7
Q ss_pred CchHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHc--CCCCCCccCCCCCCcHHH-HHHHcCCHHHHHHHHHcCCCCC
Q 001613 239 RATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLF--GAVANGSCTDKKVGPPLI-LATQAGDEDVIEILLKSKNIDI 315 (1044)
Q Consensus 239 g~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~--GAdin~~~~d~~G~TpLh-~Aa~~G~~eiVk~LL~~~gadv 315 (1044)
+...++.|++.|+.+. ++.+++. +.++| +.|..|+|||| .|+.+++.+++++|++. |+
T Consensus 17 ~~~~~l~A~~~g~~~~--------------v~~lL~~~~~~~in--~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~-g~-- 77 (743)
T TIGR00870 17 EEKAFLPAAERGDLAS--------------VYRDLEEPKKLNIN--CPDRLGRSALFVAAIENENLELTELLLNL-SC-- 77 (743)
T ss_pred HHHHHHHHHHcCCHHH--------------HHHHhccccccCCC--CcCccchhHHHHHHHhcChHHHHHHHHhC-CC--
Confidence 6789999999999988 9999998 55555 45999999999 89999999999999998 54
Q ss_pred CCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCe------ee----ecCCCCCcHHHHHHHcCCHHHHHHHH
Q 001613 316 NDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAI------VS----QQNKLGLTALHIAAGSGNSQALEDLI 385 (1044)
Q Consensus 316 n~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAd------vn----~~d~~G~TpLh~Aa~~g~~eiVklLL 385 (1044)
.+..|.||||+|+..+ +.....+++++...+.+ ++ ..+..|.||||+||.+|+.++|++||
T Consensus 78 ----~~~~G~T~Lh~A~~~~-----~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL 148 (743)
T TIGR00870 78 ----RGAVGDTLLHAISLEY-----VDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLL 148 (743)
T ss_pred ----CCCcChHHHHHHHhcc-----HHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHH
Confidence 4678999999999843 01134455555555432 11 12356999999999999999999999
Q ss_pred hcCCCCcccCC--------------CCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHHHcC-----hHH
Q 001613 386 RKEPDCINLKT--------------IMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQD-----MRF 446 (1044)
Q Consensus 386 ~~gad~in~~d--------------~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~~G~TpLh~Aa~~g-----~~~ 446 (1044)
++|++ +|.++ ..|+||||+|+..|+.+++++|+++|||+|.+|..|+||||+|+..+ ..+
T Consensus 149 ~~GAd-v~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~ 227 (743)
T TIGR00870 149 ERGAS-VPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEE 227 (743)
T ss_pred hCCCC-CCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHH
Confidence 99999 88764 35899999999999999999999999999999999999999999876 111
Q ss_pred HHHHhhhcCccccccchhhhhhhhcCChhhhhhHHHhhhcccCCCCc--cccccCCceeeeecccccCcccccccccccc
Q 001613 447 LLKAANTCHTNLAFLNQEKQNASLESDEDISGTCEALLSMVDDNSNT--ERICSGTKIEVCKYYESHSGCIRGSKCFYAL 524 (1044)
Q Consensus 447 Ll~~~~~n~~d~~~~~~~l~~A~~~~~~~i~~~~~~l~~~~d~~~~~--~~~~~~~~~~t~L~~Aa~~G~~eivk~Ll~~ 524 (1044)
+... ....++...+..... -....+..+.||||+|+..|+.+++++|++.
T Consensus 228 l~~~----------------------------~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~ 279 (743)
T TIGR00870 228 LSCQ----------------------------MYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI 279 (743)
T ss_pred HHHH----------------------------HHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence 1110 000111111111110 0112346778999999999999999999998
Q ss_pred cccccccCCCccccccc
Q 001613 525 GEEQHRKMNPGMCMIHA 541 (1044)
Q Consensus 525 GAd~~~~d~~G~tpLh~ 541 (1044)
+.+.........++.+.
T Consensus 280 ~~~~kk~~a~~~~~~~~ 296 (743)
T TIGR00870 280 KYKQKKFVAWPNGQQLL 296 (743)
T ss_pred HHhcceeeccCcchHhH
Confidence 87755555555555443
No 51
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.87 E-value=2.7e-21 Score=245.15 Aligned_cols=193 Identities=21% Similarity=0.186 Sum_probs=155.3
Q ss_pred CCHHHHHHHHhCCCCCccccccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCchHHHHHHhCCCcceec
Q 001613 68 DSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLLPLELSLSSSRMDVIW 147 (1044)
Q Consensus 68 G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T~lpLh~Aa~~g~~eIv~ 147 (1044)
...++-..|.+.+ ....+. .+.++||.||..|+.++++.|+++|+|+|..|.+|+| |||+|+.+|+
T Consensus 505 ~~l~v~~ll~~~~------~~~~~~-~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~T--pLh~Aa~~g~----- 570 (823)
T PLN03192 505 HDLNVGDLLGDNG------GEHDDP-NMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRT--PLHIAASKGY----- 570 (823)
T ss_pred ccccHHHHHhhcc------cccCCc-cchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC--HHHHHHHcCh-----
Confidence 4444555555544 112333 6779999999999999999999999999999999988 8888877765
Q ss_pred CCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHHhccCCCcccccchhh
Q 001613 148 NPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLHDSDLGAKEKTTIY 227 (1044)
Q Consensus 148 ~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~~~~adin~~~~~~~~ 227 (1044)
.+++++|+
T Consensus 571 ------------------~~~v~~Ll------------------------------------------------------ 578 (823)
T PLN03192 571 ------------------EDCVLVLL------------------------------------------------------ 578 (823)
T ss_pred ------------------HHHHHHHH------------------------------------------------------
Confidence 33344444
Q ss_pred HHHHHHHHhcCCchHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHH
Q 001613 228 ECVIREALALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQAGDEDVIEIL 307 (1044)
Q Consensus 228 ~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~Aa~~G~~eiVk~L 307 (1044)
++|+++|.. |..|.||||+|+..|+.+++++|
T Consensus 579 ----------------------------------------------~~gadin~~--d~~G~TpL~~A~~~g~~~iv~~L 610 (823)
T PLN03192 579 ----------------------------------------------KHACNVHIR--DANGNTALWNAISAKHHKIFRIL 610 (823)
T ss_pred ----------------------------------------------hcCCCCCCc--CCCCCCHHHHHHHhCCHHHHHHH
Confidence 444444443 77899999999999999999999
Q ss_pred HHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 001613 308 LKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRK 387 (1044)
Q Consensus 308 L~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~ 387 (1044)
++. ++.. + ...|.++||+|+..| +.+++++|+++|+|+|.+|..|+||||+|+..|+.+++++|+++
T Consensus 611 ~~~-~~~~--~--~~~~~~~L~~Aa~~g--------~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~ 677 (823)
T PLN03192 611 YHF-ASIS--D--PHAAGDLLCTAAKRN--------DLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMN 677 (823)
T ss_pred Hhc-Cccc--C--cccCchHHHHHHHhC--------CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHc
Confidence 987 6555 2 345779999999999 99999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCC-CcHHHHHHH
Q 001613 388 EPDCINLKTIMM-ETPLFFAVK 408 (1044)
Q Consensus 388 gad~in~~d~~G-~TpLh~Aa~ 408 (1044)
|++ ++..|..| .||+.++..
T Consensus 678 GAd-v~~~~~~g~~t~~~l~~~ 698 (823)
T PLN03192 678 GAD-VDKANTDDDFSPTELREL 698 (823)
T ss_pred CCC-CCCCCCCCCCCHHHHHHH
Confidence 998 99999888 899877644
No 52
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.86 E-value=1.6e-21 Score=226.34 Aligned_cols=258 Identities=21% Similarity=0.207 Sum_probs=202.9
Q ss_pred HHHHHHHHhcCHHHHHHHHHhhccc-------cccccccccccccchHHHHHHHcCCHHHHHHHHhCCCCCccccccccC
Q 001613 20 TLIINSLLEDDKKQLINVSKRHFID-------NSLDNADQQTAIVTKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEE 92 (1044)
Q Consensus 20 ~~ll~AIl~dD~~~L~~li~~~~~~-------~~l~~~~~~~~~~~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~ 92 (1044)
..++.|....|++..-.++..-... -.-++...++..+.|+||.||..|+.+++++|++.. +-++..|.
T Consensus 5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~e----a~ldl~d~ 80 (854)
T KOG0507|consen 5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYE----ALLDLCDT 80 (854)
T ss_pred hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcch----hhhhhhhc
Confidence 3678899999999888888733222 111245556778899999999999999999999987 88899998
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCchHHHHHHhCCCcceecCCCCCchhHHHHHHhcCCHHHHHHH
Q 001613 93 SSGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLLPLELSLSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLL 172 (1044)
Q Consensus 93 ~~G~TpLH~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T~lpLh~Aa~~g~~eIv~~~~~~~~t~L~~Ai~~g~~eivklL 172 (1044)
.|.+|||+|+.+|+.++|++||.++..+|+.+..|.| |||.|+..|| .+++.+|
T Consensus 81 -kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~t--plhlaaqhgh-----------------------~dvv~~L 134 (854)
T KOG0507|consen 81 -KGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENET--PLHLAAQHGH-----------------------LEVVFYL 134 (854)
T ss_pred -cCcceEEehhhcCcchHHHHHHhcccCCCcccccCcC--ccchhhhhcc-----------------------hHHHHHH
Confidence 9999999999999999999999999999999999988 8887777666 4557777
Q ss_pred HHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHHhccCCCcccccchhhHHHHHHHHhcCCchHHHHHHHcCCC
Q 001613 173 SQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLHDSDLGAKEKTTIYECVIREALALGRATKLQRAVKRNST 252 (1044)
Q Consensus 173 l~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~~~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~ 252 (1044)
+.+|++.-
T Consensus 135 l~~~adp~------------------------------------------------------------------------ 142 (854)
T KOG0507|consen 135 LKKNADPF------------------------------------------------------------------------ 142 (854)
T ss_pred HhcCCCcc------------------------------------------------------------------------
Confidence 77776542
Q ss_pred CCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC------CCCCCCCCCch
Q 001613 253 PTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQAGDEDVIEILLKSKNIDI------NDADADADGNS 326 (1044)
Q Consensus 253 ~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~~gadv------n~n~~d~~G~T 326 (1044)
. .+..+.|+|..|++-|..++|+.|+.. ..++ +...++..+-+
T Consensus 143 ----------------------------i--~nns~~t~ldlA~qfgr~~Vvq~ll~~-~~~~~~~~~~~~~~~~~~~~~ 191 (854)
T KOG0507|consen 143 ----------------------------I--RNNSKETVLDLASRFGRAEVVQMLLQK-KFPVQSSLRVGDIKRPFPAIY 191 (854)
T ss_pred ----------------------------c--cCcccccHHHHHHHhhhhHHHHHHhhh-ccchhhcccCCCCCCCCCCcC
Confidence 1 134444555555555555555555543 1111 11356778899
Q ss_pred HHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHH
Q 001613 327 ALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFA 406 (1044)
Q Consensus 327 pLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~A 406 (1044)
|||.|+++| +.++++.|+++|.|+|.....| |+||.|+..|..++|.+|++.|.. ..+++.+|+|+|.+-
T Consensus 192 plHlaakng--------h~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin-~h~~n~~~qtaldil 261 (854)
T KOG0507|consen 192 PLHLAAKNG--------HVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGIN-THIKNQHGQTALDII 261 (854)
T ss_pred Ccchhhhcc--------hHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccc-cccccccchHHHHHH
Confidence 999999999 9999999999999999999888 999999999999999999999998 999999999999876
Q ss_pred HHc---CCHHHHHHHHH
Q 001613 407 VKN---DHMVCAEVLLR 420 (1044)
Q Consensus 407 a~~---g~~~iVklLL~ 420 (1044)
... -..+++-++..
T Consensus 262 ~d~~~~~~~ei~ga~~~ 278 (854)
T KOG0507|consen 262 IDLQENRRYEIAGAVKN 278 (854)
T ss_pred Hhcchhhhhhhhhhhhc
Confidence 653 33455555444
No 53
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.85 E-value=7.1e-21 Score=195.50 Aligned_cols=148 Identities=20% Similarity=0.120 Sum_probs=129.4
Q ss_pred CCCCCCccCCCCCCcHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHH
Q 001613 276 GAVANGSCTDKKVGPPLILATQAGDE----DVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGIL 351 (1044)
Q Consensus 276 GAdin~~~~d~~G~TpLh~Aa~~G~~----eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklL 351 (1044)
|++++. .+..+.++||.||..|+. +++++|++. |+++ +.+|..|+||||+|+..|. ...++++++|
T Consensus 10 ~~~~~~--~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~-g~~~--~~~d~~g~t~Lh~Aa~~g~-----~~~~~~i~~L 79 (166)
T PHA02743 10 NLGAVE--IDEDEQNTFLRICRTGNIYELMEVAPFISGD-GHLL--HRYDHHGRQCTHMVAWYDR-----ANAVMKIELL 79 (166)
T ss_pred chHHhh--hccCCCcHHHHHHHcCCHHHHHHHHHHHhhc-chhh--hccCCCCCcHHHHHHHhCc-----cCHHHHHHHH
Confidence 444443 377888999999999998 666778887 8888 8899999999999999881 1124568999
Q ss_pred HhcCCeeeecC-CCCCcHHHHHHHcCCHHHHHHHHh-cCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccc
Q 001613 352 LKHGAIVSQQN-KLGLTALHIAAGSGNSQALEDLIR-KEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLN 429 (1044)
Q Consensus 352 Le~GAdvn~~d-~~G~TpLh~Aa~~g~~eiVklLL~-~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d 429 (1044)
+++|+++|.++ ..|+||||+|+..|+.+++++|+. .+++ ++.+|..|.||||+|+..++.+++++|+++||+++.++
T Consensus 80 l~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~ 158 (166)
T PHA02743 80 VNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVN-LGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPL 158 (166)
T ss_pred HHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcc
Confidence 99999999998 589999999999999999999995 7888 99999999999999999999999999999999999999
Q ss_pred CCCCc
Q 001613 430 LRRER 434 (1044)
Q Consensus 430 ~~G~T 434 (1044)
..|.+
T Consensus 159 ~~~~~ 163 (166)
T PHA02743 159 SIGLS 163 (166)
T ss_pred cCCcc
Confidence 87753
No 54
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=2.3e-20 Score=211.02 Aligned_cols=94 Identities=24% Similarity=0.326 Sum_probs=79.1
Q ss_pred chHHHHHHHcCCHHHHHHHHhCCCCCccccccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCchHHHHH
Q 001613 58 TKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLLPLELS 137 (1044)
Q Consensus 58 ~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T~lpLh~A 137 (1044)
.-.+.-|+..|..+-|+.|+..| +++|..+. +|.|+||-||.-.+.+||++|+++|++||..|.+||| |||.|
T Consensus 41 sa~~l~A~~~~d~~ev~~ll~~g----a~~~~~n~-DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wt--Plhaa 113 (527)
T KOG0505|consen 41 SAVFLEACSRGDLEEVRKLLNRG----ASPNLCNV-DGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWT--PLHAA 113 (527)
T ss_pred hHHHHhccccccHHHHHHHhccC----CCccccCC-ccchhHHHHHhcccHHHHHHHHHhcCCccccccccCC--cchhh
Confidence 34566778888999999999888 77898988 9999999999999999999999999999999999988 77777
Q ss_pred HhCCCcceecCCCCCchhHHHHHHhcCCHHHHHHHHHcCCCcch
Q 001613 138 LSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDE 181 (1044)
Q Consensus 138 a~~g~~eIv~~~~~~~~t~L~~Ai~~g~~eivklLl~~gadi~~ 181 (1044)
+.-| +.+++++|+..|+++..
T Consensus 114 ascg-----------------------~~~i~~~li~~gA~~~a 134 (527)
T KOG0505|consen 114 ASCG-----------------------YLNIVEYLIQHGANLLA 134 (527)
T ss_pred cccc-----------------------cHHHHHHHHHhhhhhhh
Confidence 6555 46679999999887643
No 55
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.82 E-value=2.8e-20 Score=200.39 Aligned_cols=158 Identities=22% Similarity=0.273 Sum_probs=143.7
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecC-C
Q 001613 285 DKKVGPPLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQN-K 363 (1044)
Q Consensus 285 d~~G~TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d-~ 363 (1044)
|.+|.|+||||+.++++++|+.||+..-+++ +.++.-|+||+++|+.... ....+.++|..|.+.| |||++- .
T Consensus 265 DsNGNTALHYsVSHaNF~VV~~LLDSgvC~V--D~qNrAGYtpiMLaALA~l---k~~~d~~vV~~LF~mg-nVNaKAsQ 338 (452)
T KOG0514|consen 265 DSNGNTALHYAVSHANFDVVSILLDSGVCDV--DQQNRAGYTPVMLAALAKL---KQPADRTVVERLFKMG-DVNAKASQ 338 (452)
T ss_pred cCCCCeeeeeeecccchHHHHHHhccCcccc--cccccccccHHHHHHHHhh---cchhhHHHHHHHHhcc-Ccchhhhh
Confidence 8999999999999999999999999966788 8999999999999987652 1233789999999875 677754 5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCcccccCCCCcHHHHHHHc
Q 001613 364 LGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLR-WGANSEVLNLRRERPIDFAKSQ 442 (1044)
Q Consensus 364 ~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~-~GAdin~~d~~G~TpLh~Aa~~ 442 (1044)
.|+|+|++|+..|+.++|+.||..|+| +|++|.+|.|+|+.|+++||.+||++||. .++|+...|.+|-|+|.+|...
T Consensus 339 ~gQTALMLAVSHGr~d~vk~LLacgAd-VNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAlea 417 (452)
T KOG0514|consen 339 HGQTALMLAVSHGRVDMVKALLACGAD-VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEA 417 (452)
T ss_pred hcchhhhhhhhcCcHHHHHHHHHccCC-CccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhc
Confidence 799999999999999999999999999 99999999999999999999999999997 5899999999999999999999
Q ss_pred ChHHHHH
Q 001613 443 DMRFLLK 449 (1044)
Q Consensus 443 g~~~Ll~ 449 (1044)
|+.+|--
T Consensus 418 gh~eIa~ 424 (452)
T KOG0514|consen 418 GHREIAV 424 (452)
T ss_pred CchHHHH
Confidence 9888865
No 56
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.82 E-value=3.4e-20 Score=199.69 Aligned_cols=168 Identities=28% Similarity=0.361 Sum_probs=143.4
Q ss_pred cccccCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCcccCCCCCchHHHHHHhCCCcceecCCCCCchhHHHHHHhcCC
Q 001613 87 VNEVEESSGMTALHLAAESHTARCVELLLKKR-ARTDIRSKDGRRLLPLELSLSSSRMDVIWNPDEYSVEDLVVILGQKN 165 (1044)
Q Consensus 87 iN~~d~~~G~TpLH~Aa~~G~~eiVklLL~~G-Advn~~d~~G~T~lpLh~Aa~~g~~eIv~~~~~~~~t~L~~Ai~~g~ 165 (1044)
||..|. +|.|+||||+.++|++||+.||+.| +|+|..++-|+| |+++|+...- -...+
T Consensus 261 VNlaDs-NGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYt--piMLaALA~l------------------k~~~d 319 (452)
T KOG0514|consen 261 VNLADS-NGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYT--PVMLAALAKL------------------KQPAD 319 (452)
T ss_pred hhhhcC-CCCeeeeeeecccchHHHHHHhccCccccccccccccc--HHHHHHHHhh------------------cchhh
Confidence 788899 9999999999999999999999997 799999999999 8877764321 12234
Q ss_pred HHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHHhccCCCcccccchhhHHHHHHHHhcCCchHHHH
Q 001613 166 LTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLHDSDLGAKEKTTIYECVIREALALGRATKLQR 245 (1044)
Q Consensus 166 ~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~~~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~ 245 (1044)
.++|.-|...| ++|.+.. ..|+|+|++
T Consensus 320 ~~vV~~LF~mg----------------------------------------nVNaKAs-------------Q~gQTALML 346 (452)
T KOG0514|consen 320 RTVVERLFKMG----------------------------------------DVNAKAS-------------QHGQTALML 346 (452)
T ss_pred HHHHHHHHhcc----------------------------------------Ccchhhh-------------hhcchhhhh
Confidence 55666665544 3333322 239999999
Q ss_pred HHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCc
Q 001613 246 AVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQAGDEDVIEILLKSKNIDINDADADADGN 325 (1044)
Q Consensus 246 A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~ 325 (1044)
|+..|..++ ++.|+..|||+|++ |.+|.|+|++|+++||.+||++||...++|+ ...|.+|.
T Consensus 347 AVSHGr~d~--------------vk~LLacgAdVNiQ--DdDGSTALMCA~EHGhkEivklLLA~p~cd~--sLtD~DgS 408 (452)
T KOG0514|consen 347 AVSHGRVDM--------------VKALLACGADVNIQ--DDDGSTALMCAAEHGHKEIVKLLLAVPSCDI--SLTDVDGS 408 (452)
T ss_pred hhhcCcHHH--------------HHHHHHccCCCccc--cCCccHHHhhhhhhChHHHHHHHhccCcccc--eeecCCCc
Confidence 999999998 99999999999987 9999999999999999999999999988888 89999999
Q ss_pred hHHHHHHhcCCCcccccchHHHHHHHHhc
Q 001613 326 SALHCALKTSMGLSQHILQNRIVGILLKH 354 (1044)
Q Consensus 326 TpLh~Aa~~g~~~~~~~~~~~iVklLLe~ 354 (1044)
|+|.+|...| |.+|.-+|..+
T Consensus 409 TAl~IAleag--------h~eIa~mlYa~ 429 (452)
T KOG0514|consen 409 TALSIALEAG--------HREIAVMLYAH 429 (452)
T ss_pred hhhhhHHhcC--------chHHHHHHHHH
Confidence 9999999999 99998888764
No 57
>PHA02741 hypothetical protein; Provisional
Probab=99.81 E-value=1.5e-19 Score=186.30 Aligned_cols=131 Identities=22% Similarity=0.250 Sum_probs=119.7
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHc-----CCCCCCCCCCCCCCchHHHHHHhcCCCcccccch----HHHHHHHHhc
Q 001613 284 TDKKVGPPLILATQAGDEDVIEILLKS-----KNIDINDADADADGNSALHCALKTSMGLSQHILQ----NRIVGILLKH 354 (1044)
Q Consensus 284 ~d~~G~TpLh~Aa~~G~~eiVk~LL~~-----~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~----~~iVklLLe~ 354 (1044)
.+..|.||||+|+..|+.++|++|+.. .|+++ +.+|..|.||||+|+..| + .+++++|+++
T Consensus 17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i--n~~d~~g~T~Lh~A~~~g--------~~~~~~~ii~~Ll~~ 86 (169)
T PHA02741 17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL--NATDDAGQMCIHIAAEKH--------EAQLAAEIIDHLIEL 86 (169)
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh--hccCCCCCcHHHHHHHcC--------ChHHHHHHHHHHHHc
Confidence 378999999999999999999998653 15777 899999999999999998 5 5899999999
Q ss_pred CCeeeecCC-CCCcHHHHHHHcCCHHHHHHHHh-cCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc
Q 001613 355 GAIVSQQNK-LGLTALHIAAGSGNSQALEDLIR-KEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANS 425 (1044)
Q Consensus 355 GAdvn~~d~-~G~TpLh~Aa~~g~~eiVklLL~-~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdi 425 (1044)
|+++|.++. .|+||||+|+..++.+++++|+. .+++ ++..|..|+||||+|+..++.+++++|+++++..
T Consensus 87 gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~-~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~ 158 (169)
T PHA02741 87 GADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGID-LHFCNADNKSPFELAIDNEDVAMMQILREIVATS 158 (169)
T ss_pred CCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999985 89999999999999999999998 4887 9999999999999999999999999999987654
No 58
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.80 E-value=1.8e-19 Score=182.53 Aligned_cols=135 Identities=19% Similarity=0.227 Sum_probs=112.8
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-----CCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCee
Q 001613 284 TDKKVGPPLILATQAGDEDVIEILLKSKNIDIN-----DADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIV 358 (1044)
Q Consensus 284 ~d~~G~TpLh~Aa~~G~~eiVk~LL~~~gadvn-----~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdv 358 (1044)
.|..|.||||+|+..|+. +.+|+.. +...+ .+..|..|.||||+|+..+. ....+++++|+++|+++
T Consensus 13 ~d~~g~tpLh~A~~~g~~--~~l~~~~-~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~-----~~~~e~v~~Ll~~gadi 84 (154)
T PHA02736 13 PDIEGENILHYLCRNGGV--TDLLAFK-NAISDENRYLVLEYNRHGKQCVHIVSNPDK-----ADPQEKLKLLMEWGADI 84 (154)
T ss_pred cCCCCCCHHHHHHHhCCH--HHHHHHH-HHhcchhHHHHHHhcCCCCEEEEeecccCc-----hhHHHHHHHHHHcCCCc
Confidence 478999999999999984 4444332 22221 13468899999999999881 11236789999999999
Q ss_pred eecC-CCCCcHHHHHHHcCCHHHHHHHHhc-CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc
Q 001613 359 SQQN-KLGLTALHIAAGSGNSQALEDLIRK-EPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEV 427 (1044)
Q Consensus 359 n~~d-~~G~TpLh~Aa~~g~~eiVklLL~~-gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~ 427 (1044)
|.++ ..|+||||+|+..|+.+++++|+.+ +++ +|.+|..|+||||+|+..|+.+++++|+++||++++
T Consensus 85 n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d-~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~~ 154 (154)
T PHA02736 85 NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVN-MEILNYAFKTPYYVACERHDAKMMNILRAKGAQCKV 154 (154)
T ss_pred cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 9998 5999999999999999999999985 777 999999999999999999999999999999998763
No 59
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.79 E-value=1.4e-19 Score=204.69 Aligned_cols=97 Identities=27% Similarity=0.329 Sum_probs=89.7
Q ss_pred HHHHHHHhcCCeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc
Q 001613 346 RIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANS 425 (1044)
Q Consensus 346 ~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdi 425 (1044)
.=++..+..|.+.++.+..|-|.||.|+.+|..++.++||++|.+ ++++|.+|+||||.|+..|..+++++|+++|++.
T Consensus 179 ~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~-~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~ 257 (527)
T KOG0505|consen 179 DDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYS-VNIKDYDGWTPLHAAAHWGQEDACELLVEHGADM 257 (527)
T ss_pred HHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccC-cccccccCCCcccHHHHhhhHhHHHHHHHhhccc
Confidence 334455568999999998899999999999999999999999999 9999999999999999999999999999999999
Q ss_pred ccccCCCCcHHHHHHHcC
Q 001613 426 EVLNLRRERPIDFAKSQD 443 (1044)
Q Consensus 426 n~~d~~G~TpLh~Aa~~g 443 (1044)
+..+..|.||+++|...-
T Consensus 258 d~~t~~g~~p~dv~dee~ 275 (527)
T KOG0505|consen 258 DAKTKMGETPLDVADEEE 275 (527)
T ss_pred chhhhcCCCCccchhhhh
Confidence 999999999999998754
No 60
>PHA02741 hypothetical protein; Provisional
Probab=99.78 E-value=1e-18 Score=180.04 Aligned_cols=126 Identities=21% Similarity=0.303 Sum_probs=115.2
Q ss_pred CCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHh------cCCeeeecCCCCCcHHHHHHHcCC----HHHHHHHHhc
Q 001613 318 ADADADGNSALHCALKTSMGLSQHILQNRIVGILLK------HGAIVSQQNKLGLTALHIAAGSGN----SQALEDLIRK 387 (1044)
Q Consensus 318 n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe------~GAdvn~~d~~G~TpLh~Aa~~g~----~eiVklLL~~ 387 (1044)
+.++..|.||||+|+..| +.+++++|+. .|++++.+|..|+||||+|+..|+ .+++++|+++
T Consensus 15 ~~~~~~g~t~Lh~Aa~~g--------~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~ 86 (169)
T PHA02741 15 AEKNSEGENFFHEAARCG--------CFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIEL 86 (169)
T ss_pred hccccCCCCHHHHHHHcC--------CHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHc
Confidence 446789999999999999 9999999854 478999999999999999999999 5899999999
Q ss_pred CCCCcccCCC-CCCcHHHHHHHcCCHHHHHHHHH-CCCCcccccCCCCcHHHHHHHcChHHHHHHhh
Q 001613 388 EPDCINLKTI-MMETPLFFAVKNDHMVCAEVLLR-WGANSEVLNLRRERPIDFAKSQDMRFLLKAAN 452 (1044)
Q Consensus 388 gad~in~~d~-~G~TpLh~Aa~~g~~~iVklLL~-~GAdin~~d~~G~TpLh~Aa~~g~~~Ll~~~~ 452 (1044)
|++ +|.++. .|+||||+|+.+++.+++++|++ .|++++.+|..|+||||+|+..+..++++.+.
T Consensus 87 gad-in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~ 152 (169)
T PHA02741 87 GAD-INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILR 152 (169)
T ss_pred CCC-CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 999 999985 99999999999999999999998 59999999999999999999999877776444
No 61
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.78 E-value=1.1e-18 Score=170.81 Aligned_cols=143 Identities=26% Similarity=0.256 Sum_probs=130.4
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHH
Q 001613 290 PPLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTAL 369 (1044)
Q Consensus 290 TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpL 369 (1044)
-.+.+|+..+.+..|+.||+. .++. +|.+|.+|+||||.|+.+| +++||+.|+..||+++++...|||||
T Consensus 65 rl~lwaae~nrl~eV~~lL~e-~an~-vNtrD~D~YTpLHRAaYn~--------h~div~~ll~~gAn~~a~T~~GWTPL 134 (228)
T KOG0512|consen 65 RLLLWAAEKNRLTEVQRLLSE-KANH-VNTRDEDEYTPLHRAAYNG--------HLDIVHELLLSGANKEAKTNEGWTPL 134 (228)
T ss_pred HHHHHHHhhccHHHHHHHHHh-cccc-ccccccccccHHHHHHhcC--------chHHHHHHHHccCCcccccccCccch
Confidence 457899999999999999998 4443 3999999999999999999 99999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCH-HHHHHHH-HCCCCcccccCCCCcHHHHHHHcC
Q 001613 370 HIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHM-VCAEVLL-RWGANSEVLNLRRERPIDFAKSQD 443 (1044)
Q Consensus 370 h~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~-~iVklLL-~~GAdin~~d~~G~TpLh~Aa~~g 443 (1044)
|-||..++.+++-+||++|++ +|+......||||+||...+. ..+.+|+ ..+.++...+..+.||+++|-.-+
T Consensus 135 hSAckWnN~~va~~LLqhgaD-VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~ 209 (228)
T KOG0512|consen 135 HSACKWNNFEVAGRLLQHGAD-VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS 209 (228)
T ss_pred hhhhcccchhHHHHHHhccCc-ccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence 999999999999999999999 999999999999999987664 5556555 578999999999999999998876
No 62
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.77 E-value=1.1e-18 Score=179.21 Aligned_cols=138 Identities=18% Similarity=0.147 Sum_probs=122.5
Q ss_pred CchHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccCCCCCCcHHHHHHHcCCHHH---HHHHHHcCCCCC
Q 001613 239 RATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQAGDEDV---IEILLKSKNIDI 315 (1044)
Q Consensus 239 g~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~d~~G~TpLh~Aa~~G~~ei---Vk~LL~~~gadv 315 (1044)
+.++||.|++.|+... +...+++|++.|++++.. |..|+||||+|+..|+.++ +++|++. |+++
T Consensus 20 ~~~~l~~a~~~g~~~~----------l~~~~~~l~~~g~~~~~~--d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~-Gadi 86 (166)
T PHA02743 20 EQNTFLRICRTGNIYE----------LMEVAPFISGDGHLLHRY--DHHGRQCTHMVAWYDRANAVMKIELLVNM-GADI 86 (166)
T ss_pred CCcHHHHHHHcCCHHH----------HHHHHHHHhhcchhhhcc--CCCCCcHHHHHHHhCccCHHHHHHHHHHc-CCCC
Confidence 7889999999988632 222367888899988765 8899999999999988654 8999999 9999
Q ss_pred CCCCCC-CCCchHHHHHHhcCCCcccccchHHHHHHHHh-cCCeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 001613 316 NDADAD-ADGNSALHCALKTSMGLSQHILQNRIVGILLK-HGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCIN 393 (1044)
Q Consensus 316 n~n~~d-~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe-~GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in 393 (1044)
+.++ ..|.||||+|+..+ +.+++++|++ .|++++.+|..|+||||+|+..++.+++++|+++|++ ++
T Consensus 87 --n~~d~~~g~TpLh~A~~~g--------~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~-~~ 155 (166)
T PHA02743 87 --NARELGTGNTLLHIAASTK--------NYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAV-CD 155 (166)
T ss_pred --CCCCCCCCCcHHHHHHHhC--------CHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CC
Confidence 8888 58999999999999 9999999995 8999999999999999999999999999999999999 99
Q ss_pred cCCCCCC
Q 001613 394 LKTIMME 400 (1044)
Q Consensus 394 ~~d~~G~ 400 (1044)
.++..|.
T Consensus 156 ~~~~~~~ 162 (166)
T PHA02743 156 DPLSIGL 162 (166)
T ss_pred CcccCCc
Confidence 9988775
No 63
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.76 E-value=3.9e-18 Score=189.32 Aligned_cols=115 Identities=24% Similarity=0.277 Sum_probs=61.3
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCC----CCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeec-CCCCC
Q 001613 292 LILATQAGDEDVIEILLKSKNIDINDADA----DADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQ-NKLGL 366 (1044)
Q Consensus 292 Lh~Aa~~G~~eiVk~LL~~~gadvn~n~~----d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~-d~~G~ 366 (1044)
||.|+..|+.++|++||++ |+|+ +.+ +..|.||||+|+..+ +.+++++|+++|||+|.+ +..|.
T Consensus 37 L~~A~~~~~~eivk~LL~~-GAdi--N~~~~~sd~~g~TpLh~Aa~~~--------~~eivklLL~~GADVN~~~~~~g~ 105 (300)
T PHA02884 37 LYSSIKFHYTDIIDAILKL-GADP--EAPFPLSENSKTNPLIYAIDCD--------NDDAAKLLIRYGADVNRYAEEAKI 105 (300)
T ss_pred HHHHHHcCCHHHHHHHHHC-CCCc--cccCcccCCCCCCHHHHHHHcC--------CHHHHHHHHHcCCCcCcccCCCCC
Confidence 3444444555555555555 5555 333 235555555555555 555555555555555553 23455
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHH
Q 001613 367 TALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVL 418 (1044)
Q Consensus 367 TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklL 418 (1044)
||||+|+..|+.+++++|+++|++ +|.+|..|.||||+|+..++.+++.++
T Consensus 106 TpLh~Aa~~~~~eivklLL~~GAd-in~kd~~G~TpL~~A~~~~~~~~~~~~ 156 (300)
T PHA02884 106 TPLYISVLHGCLKCLEILLSYGAD-INIQTNDMVTPIELALMICNNFLAFMI 156 (300)
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHhCChhHHHHh
Confidence 555555555555555555555555 555555555555555555555554333
No 64
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.76 E-value=6.8e-18 Score=187.42 Aligned_cols=123 Identities=25% Similarity=0.270 Sum_probs=105.7
Q ss_pred CCCCCCCch-HHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecC----CCCCcHHHHHHHcCCHHHHHHHHhcCCCCc
Q 001613 318 ADADADGNS-ALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQN----KLGLTALHIAAGSGNSQALEDLIRKEPDCI 392 (1044)
Q Consensus 318 n~~d~~G~T-pLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d----~~G~TpLh~Aa~~g~~eiVklLL~~gad~i 392 (1044)
..+|..|+| +||.|+..| +.+++++|+++||++|.++ ..|.||||+|+..|+.+++++|+++|++ +
T Consensus 26 ~~~d~~~~~~lL~~A~~~~--------~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD-V 96 (300)
T PHA02884 26 KKKNKICIANILYSSIKFH--------YTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD-V 96 (300)
T ss_pred hccCcCCCCHHHHHHHHcC--------CHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-c
Confidence 446677766 556666667 8999999999999999874 5899999999999999999999999998 9
Q ss_pred ccC-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHHHcChHHHHH
Q 001613 393 NLK-TIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLLK 449 (1044)
Q Consensus 393 n~~-d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~Ll~ 449 (1044)
|.+ +..|.||||+|+..|+.+++++|+++||+++.+|..|.||||+|+..+...+..
T Consensus 97 N~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~ 154 (300)
T PHA02884 97 NRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAF 154 (300)
T ss_pred CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHH
Confidence 986 457999999999999999999999999999999999999999999877665544
No 65
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.72 E-value=3.4e-18 Score=178.67 Aligned_cols=142 Identities=30% Similarity=0.367 Sum_probs=122.2
Q ss_pred HcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcC
Q 001613 297 QAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSG 376 (1044)
Q Consensus 297 ~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g 376 (1044)
+.|+.--|++-|+...-|. |..|..|.+||||||+.| +..+|+.|+..|+.+|..|....||||+|+..|
T Consensus 9 regna~qvrlwld~tehdl--n~gddhgfsplhwaakeg--------h~aivemll~rgarvn~tnmgddtplhlaaahg 78 (448)
T KOG0195|consen 9 REGNAFQVRLWLDDTEHDL--NVGDDHGFSPLHWAAKEG--------HVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHG 78 (448)
T ss_pred hcCCeEEEEEEecCccccc--ccccccCcchhhhhhhcc--------cHHHHHHHHhcccccccccCCCCcchhhhhhcc
Confidence 3445444555555445566 888999999999999999 999999999999999999998999999999999
Q ss_pred CHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHHHcChHHHHH
Q 001613 377 NSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLLK 449 (1044)
Q Consensus 377 ~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~Ll~ 449 (1044)
+.++|+.||+..++ +|+.+..|+|||||||..|+..|.+-|+..||-+++.|++|.|||+.|.-.-...|++
T Consensus 79 hrdivqkll~~kad-vnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e 150 (448)
T KOG0195|consen 79 HRDIVQKLLSRKAD-VNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLE 150 (448)
T ss_pred cHHHHHHHHHHhcc-cchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999999999886544334443
No 66
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.71 E-value=2.7e-17 Score=166.64 Aligned_cols=129 Identities=16% Similarity=0.190 Sum_probs=108.9
Q ss_pred HhcCCchHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCC-----ccCCCCCCcHHHHHHHcCCHH---HHHH
Q 001613 235 LALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANG-----SCTDKKVGPPLILATQAGDED---VIEI 306 (1044)
Q Consensus 235 ~~~gg~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~-----~~~d~~G~TpLh~Aa~~G~~e---iVk~ 306 (1044)
.+..|.||||+|+..|+ + +++|...+...+. ...|..|.||||+|+..|+.+ ++++
T Consensus 13 ~d~~g~tpLh~A~~~g~--~--------------~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~ 76 (154)
T PHA02736 13 PDIEGENILHYLCRNGG--V--------------TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKL 76 (154)
T ss_pred cCCCCCCHHHHHHHhCC--H--------------HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHH
Confidence 34459999999999997 2 3444333332221 124789999999999999874 6899
Q ss_pred HHHcCCCCCCCCCCC-CCCchHHHHHHhcCCCcccccchHHHHHHHHh-cCCeeeecCCCCCcHHHHHHHcCCHHHHHHH
Q 001613 307 LLKSKNIDINDADAD-ADGNSALHCALKTSMGLSQHILQNRIVGILLK-HGAIVSQQNKLGLTALHIAAGSGNSQALEDL 384 (1044)
Q Consensus 307 LL~~~gadvn~n~~d-~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe-~GAdvn~~d~~G~TpLh~Aa~~g~~eiVklL 384 (1044)
|++. |+++ +.++ ..|.||||+|+..+ +.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|
T Consensus 77 Ll~~-gadi--n~~~~~~g~T~Lh~A~~~~--------~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~L 145 (154)
T PHA02736 77 LMEW-GADI--NGKERVFGNTPLHIAVYTQ--------NYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNIL 145 (154)
T ss_pred HHHc-CCCc--cccCCCCCCcHHHHHHHhC--------CHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHH
Confidence 9999 9999 8887 59999999999999 9999999998 5999999999999999999999999999999
Q ss_pred HhcCCC
Q 001613 385 IRKEPD 390 (1044)
Q Consensus 385 L~~gad 390 (1044)
+++|++
T Consensus 146 l~~ga~ 151 (154)
T PHA02736 146 RAKGAQ 151 (154)
T ss_pred HHcCCC
Confidence 999987
No 67
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=3.2e-17 Score=168.77 Aligned_cols=210 Identities=17% Similarity=0.181 Sum_probs=169.9
Q ss_pred ccccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEE
Q 001613 543 TQEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEV 621 (1044)
Q Consensus 543 a~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i 621 (1044)
.++.+.++.|.-||..++.+++|.+|.. .|+|++|++++|+.++ +|-|||||.|-++++|++|+.. ||..+..|.|
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~S-iGeiEScKLvRDKitG--qSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTI 113 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGS-IGEIESCKLVRDKITG--QSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTI 113 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhc-ccceeeeeeeeccccc--cccccceeeecChHHHHHHHhhhcceeeccceE
Confidence 3788899999999999999999999998 9999999999998776 8999999999999999999999 9999999999
Q ss_pred EEcccCChhHHHHHHHHHHHhhhhhhhhcccccCCCCCChhhHHHH--HhhhhhHHHhhhhcccc--Cccccccchhhhc
Q 001613 622 EIKSAVPKEVLFAELQKQSAQQQESKHEHQARLGAKIPDERTMEQI--ISRNAKEEIQTKKITEE--MPCRRVTEEATAE 697 (1044)
Q Consensus 622 ~v~~A~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~--l~~~~~~e~~~~~i~~~--~s~~~~~~~~~~~ 697 (1044)
+|+.|.|.....+ +-......+|+.++.+++ +.++....|++..+..+ --++.|+++++++
T Consensus 114 KVSyARPSs~~Ik---------------~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDK 178 (360)
T KOG0145|consen 114 KVSYARPSSDSIK---------------DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDK 178 (360)
T ss_pred EEEeccCChhhhc---------------ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecc
Confidence 9999998652111 122667789999998877 88999999999887722 4568999999999
Q ss_pred cccccccccC-CCCCCCccccccccccccccCchhhhhhhhccCCcchhhhcccCCCCC-c-----------cccccccc
Q 001613 698 KSWAGRLLYG-QPKTSSNESQAYLVESFEEKSMPKWLRTFKKWLPRFLKDVYRHPLEGK-Y-----------ALSSLKTD 764 (1044)
Q Consensus 698 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~ 764 (1044)
|..+.++|.| ++..|+++++||.|++.++++--+..-.+ .+-|..+. ||.+|+- . +-...-++
T Consensus 179 r~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~l---s~ly~sp~-rr~~Gp~hh~~~r~r~~~~~~~~~~~~r 254 (360)
T KOG0145|consen 179 RIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALL---SQLYQSPA-RRYGGPMHHQAQRFRLDNLLNPHAAQAR 254 (360)
T ss_pred hhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhh---HHhhcCcc-ccCCCcccchhhhhccccccchhhhhcc
Confidence 9999999999 99999999999999999998754444433 34444444 5554432 1 22234567
Q ss_pred hhhhcccccc
Q 001613 765 FKAVCGLELD 774 (1044)
Q Consensus 765 ~~~~~~~~~~ 774 (1044)
|+++.++.++
T Consensus 255 fsP~~~d~m~ 264 (360)
T KOG0145|consen 255 FSPMTIDGMS 264 (360)
T ss_pred CCCccccccc
Confidence 7777766554
No 68
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.67 E-value=2.3e-16 Score=154.65 Aligned_cols=143 Identities=32% Similarity=0.321 Sum_probs=123.0
Q ss_pred hHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCC-CCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 001613 241 TKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVA-NGSCTDKKVGPPLILATQAGDEDVIEILLKSKNIDINDAD 319 (1044)
Q Consensus 241 t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdi-n~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~ 319 (1044)
..+.+|+..+.... |+.|++..++. |. +|.+|.||||.|+.+|+.+||+.||.. |+++ +.
T Consensus 65 rl~lwaae~nrl~e--------------V~~lL~e~an~vNt--rD~D~YTpLHRAaYn~h~div~~ll~~-gAn~--~a 125 (228)
T KOG0512|consen 65 RLLLWAAEKNRLTE--------------VQRLLSEKANHVNT--RDEDEYTPLHRAAYNGHLDIVHELLLS-GANK--EA 125 (228)
T ss_pred HHHHHHHhhccHHH--------------HHHHHHhccccccc--cccccccHHHHHHhcCchHHHHHHHHc-cCCc--cc
Confidence 34667777777665 88888887764 54 599999999999999999999999999 9999 99
Q ss_pred CCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcCCH-HHHHHHHhcCCCCcccCCCC
Q 001613 320 ADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNS-QALEDLIRKEPDCINLKTIM 398 (1044)
Q Consensus 320 ~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g~~-eiVklLL~~gad~in~~d~~ 398 (1044)
+...|+||||-||+.+ +.+++-+||++|+|||+.....+||||+||...+. ..+.+|+.......-.++..
T Consensus 126 ~T~~GWTPLhSAckWn--------N~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~ 197 (228)
T KOG0512|consen 126 KTNEGWTPLHSACKWN--------NFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNL 197 (228)
T ss_pred ccccCccchhhhhccc--------chhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCc
Confidence 9999999999999998 99999999999999999999999999999987654 56677765544447788889
Q ss_pred CCcHHHHHHHcC
Q 001613 399 METPLFFAVKND 410 (1044)
Q Consensus 399 G~TpLh~Aa~~g 410 (1044)
+.||+.+|-+-+
T Consensus 198 eeta~~iARRT~ 209 (228)
T KOG0512|consen 198 EETAFDIARRTS 209 (228)
T ss_pred cchHHHHHHHhh
Confidence 999999997754
No 69
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.67 E-value=1.4e-16 Score=166.82 Aligned_cols=140 Identities=26% Similarity=0.228 Sum_probs=121.7
Q ss_pred HcCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHh
Q 001613 274 LFGAVANGSCTDKKVGPPLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLK 353 (1044)
Q Consensus 274 ~~GAdin~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe 353 (1044)
+..-|.|.. |..|.+|||+|++.|+..+|+.||.+ |+.+ |..+....||||+|+..| |-+||+.|++
T Consensus 22 ~tehdln~g--ddhgfsplhwaakegh~aivemll~r-garv--n~tnmgddtplhlaaahg--------hrdivqkll~ 88 (448)
T KOG0195|consen 22 DTEHDLNVG--DDHGFSPLHWAAKEGHVAIVEMLLSR-GARV--NSTNMGDDTPLHLAAAHG--------HRDIVQKLLS 88 (448)
T ss_pred Ccccccccc--cccCcchhhhhhhcccHHHHHHHHhc-cccc--ccccCCCCcchhhhhhcc--------cHHHHHHHHH
Confidence 344555554 99999999999999999999999999 9999 899999999999999999 9999999999
Q ss_pred cCCeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc
Q 001613 354 HGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEV 427 (1044)
Q Consensus 354 ~GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~ 427 (1044)
..+|+|+.|..|+|||||||..|...+.+-|+..|+. +++.+++|.|||..|--.-...+.++--++|-++|.
T Consensus 89 ~kadvnavnehgntplhyacfwgydqiaedli~~ga~-v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~nr 161 (448)
T KOG0195|consen 89 RKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAA-VNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPNR 161 (448)
T ss_pred HhcccchhhccCCCchhhhhhhcHHHHHHHHHhccce-eeecccCCCCchhhhchHHHHHHHHHHHHhCCCCCc
Confidence 9999999999999999999999999999999999999 999999999999987433222233333346777764
No 70
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.65 E-value=4.8e-16 Score=142.20 Aligned_cols=89 Identities=34% Similarity=0.465 Sum_probs=83.3
Q ss_pred HHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHH
Q 001613 328 LHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV 407 (1044)
Q Consensus 328 Lh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa 407 (1044)
||+|++.| +.+++++|++.+++++. |.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+
T Consensus 1 L~~A~~~~--------~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~ 67 (89)
T PF12796_consen 1 LHIAAQNG--------NLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGAD-INSQDKNGNTALHYAA 67 (89)
T ss_dssp HHHHHHTT--------THHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTC-TT-BSTTSSBHHHHHH
T ss_pred CHHHHHcC--------CHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhccc-ccccCCCCCCHHHHHH
Confidence 79999999 99999999999998876 89999999999999999999999998 9999999999999999
Q ss_pred HcCCHHHHHHHHHCCCCccccc
Q 001613 408 KNDHMVCAEVLLRWGANSEVLN 429 (1044)
Q Consensus 408 ~~g~~~iVklLL~~GAdin~~d 429 (1044)
.+|+.+++++|+++|++++.+|
T Consensus 68 ~~~~~~~~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 68 ENGNLEIVKLLLEHGADVNIRN 89 (89)
T ss_dssp HTTHHHHHHHHHHTTT-TTSS-
T ss_pred HcCCHHHHHHHHHcCCCCCCcC
Confidence 9999999999999999999876
No 71
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.63 E-value=4.4e-15 Score=142.13 Aligned_cols=123 Identities=37% Similarity=0.554 Sum_probs=93.2
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCC
Q 001613 285 DKKVGPPLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKL 364 (1044)
Q Consensus 285 d~~G~TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~ 364 (1044)
+..|.||||+|+..++.+++++|++. +.++ +..+..|.||||+|+..+ +.+++++|+++|++++..+..
T Consensus 4 ~~~g~t~l~~a~~~~~~~~i~~li~~-~~~~--~~~~~~g~~~l~~a~~~~--------~~~~~~~ll~~~~~~~~~~~~ 72 (126)
T cd00204 4 DEDGRTPLHLAASNGHLEVVKLLLEN-GADV--NAKDNDGRTPLHLAAKNG--------HLEIVKLLLEKGADVNARDKD 72 (126)
T ss_pred CcCCCCHHHHHHHcCcHHHHHHHHHc-CCCC--CccCCCCCcHHHHHHHcC--------CHHHHHHHHHcCCCccccCCC
Confidence 45677777777777777777777777 6666 667777777777777777 677777777777777777777
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 001613 365 GLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLL 419 (1044)
Q Consensus 365 G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL 419 (1044)
|.||+|+|+..++.+++++|++++.+ ++..+..|.|||++|+..++.+++++|+
T Consensus 73 ~~~~l~~a~~~~~~~~~~~L~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~Ll 126 (126)
T cd00204 73 GNTPLHLAARNGNLDVVKLLLKHGAD-VNARDKDGRTPLHLAAKNGHLEVVKLLL 126 (126)
T ss_pred CCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence 77777777777777777777777766 7777777777777777777777777764
No 72
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.61 E-value=1.7e-15 Score=179.28 Aligned_cols=157 Identities=24% Similarity=0.246 Sum_probs=137.1
Q ss_pred CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCC--CCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCee
Q 001613 284 TDKKVGPPLILATQA---GDEDVIEILLKSKNIDIND--ADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIV 358 (1044)
Q Consensus 284 ~d~~G~TpLh~Aa~~---G~~eiVk~LL~~~gadvn~--n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdv 358 (1044)
+...|.|.||.|..+ ++.++++.||+...--+|. -.....|.||||+|+.+. +.++|++|++.||||
T Consensus 139 RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~--------~~~~V~lLl~~gADV 210 (782)
T KOG3676|consen 139 RGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNR--------DAELVRLLLAAGADV 210 (782)
T ss_pred ccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhc--------cHHHHHHHHHcCCch
Confidence 467899999999974 5668999999864322310 112457999999999998 999999999999999
Q ss_pred eecC-----------------------CCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHH
Q 001613 359 SQQN-----------------------KLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCA 415 (1044)
Q Consensus 359 n~~d-----------------------~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iV 415 (1044)
+++- ..|..||.+||-.++.+++++|+++|+| +|++|..|+|.||..+.+-..++.
T Consensus 211 ~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd-~~aqDS~GNTVLH~lVi~~~~~My 289 (782)
T KOG3676|consen 211 HARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD-PNAQDSNGNTVLHMLVIHFVTEMY 289 (782)
T ss_pred hhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC-CCccccCCChHHHHHHHHHHHHHH
Confidence 8741 1378899999999999999999999999 999999999999999999999999
Q ss_pred HHHHHCCCC--cccccCCCCcHHHHHHHcChHHHHH
Q 001613 416 EVLLRWGAN--SEVLNLRRERPIDFAKSQDMRFLLK 449 (1044)
Q Consensus 416 klLL~~GAd--in~~d~~G~TpLh~Aa~~g~~~Ll~ 449 (1044)
++++++||+ ..++|+.|.|||.+|++.|..+|.+
T Consensus 290 ~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~ 325 (782)
T KOG3676|consen 290 DLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQ 325 (782)
T ss_pred HHHHhcCCCccccccccCCCChHHHHHHhhhHHHHH
Confidence 999999999 9999999999999999999777766
No 73
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.61 E-value=8.9e-15 Score=140.01 Aligned_cols=122 Identities=29% Similarity=0.443 Sum_probs=115.6
Q ss_pred CCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCC
Q 001613 320 ADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMM 399 (1044)
Q Consensus 320 ~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G 399 (1044)
.|..|.||||+|+..+ +.+++++|+++|++.+.++..|.||||+|+..++.+++++|+++++. ++..+..|
T Consensus 3 ~~~~g~t~l~~a~~~~--------~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~ 73 (126)
T cd00204 3 RDEDGRTPLHLAASNG--------HLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-VNARDKDG 73 (126)
T ss_pred cCcCCCCHHHHHHHcC--------cHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCC
Confidence 4678999999999999 89999999999999999999999999999999999999999999987 89999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHHHcChHHHHHH
Q 001613 400 ETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLLKA 450 (1044)
Q Consensus 400 ~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~Ll~~ 450 (1044)
.||+|+|+..++.+++++|+++|.+++..+..|.|||++|...+...+++.
T Consensus 74 ~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 124 (126)
T cd00204 74 NTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKL 124 (126)
T ss_pred CCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999999999999999999987777664
No 74
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.60 E-value=3.3e-15 Score=136.68 Aligned_cols=89 Identities=38% Similarity=0.581 Sum_probs=82.0
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHH
Q 001613 292 LILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHI 371 (1044)
Q Consensus 292 Lh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~ 371 (1044)
||+|++.|+.+++++|++. +.++ +. |+||||+|+..| +.+++++|+++|++++.+|..|+||||+
T Consensus 1 L~~A~~~~~~~~~~~ll~~-~~~~--~~----~~~~l~~A~~~~--------~~~~~~~Ll~~g~~~~~~~~~g~t~L~~ 65 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEK-GADI--NL----GNTALHYAAENG--------NLEIVKLLLENGADINSQDKNGNTALHY 65 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHT-TSTT--TS----SSBHHHHHHHTT--------THHHHHHHHHTTTCTT-BSTTSSBHHHH
T ss_pred CHHHHHcCCHHHHHHHHHC-cCCC--CC----CCCHHHHHHHcC--------CHHHHHHHHHhcccccccCCCCCCHHHH
Confidence 7999999999999999997 8888 43 899999999999 9999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCcccCC
Q 001613 372 AAGSGNSQALEDLIRKEPDCINLKT 396 (1044)
Q Consensus 372 Aa~~g~~eiVklLL~~gad~in~~d 396 (1044)
|+.+|+.+++++|+++|++ +|.+|
T Consensus 66 A~~~~~~~~~~~Ll~~g~~-~~~~n 89 (89)
T PF12796_consen 66 AAENGNLEIVKLLLEHGAD-VNIRN 89 (89)
T ss_dssp HHHTTHHHHHHHHHHTTT--TTSS-
T ss_pred HHHcCCHHHHHHHHHcCCC-CCCcC
Confidence 9999999999999999998 88775
No 75
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.55 E-value=2.4e-14 Score=169.77 Aligned_cols=199 Identities=21% Similarity=0.243 Sum_probs=155.6
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcC---------CCCCcccCCCCCchHHHHHHhCCCcceecCCCCCchhHHHHHHhcC
Q 001613 94 SGMTALHLAAESHTARCVELLLKKR---------ARTDIRSKDGRRLLPLELSLSSSRMDVIWNPDEYSVEDLVVILGQK 164 (1044)
Q Consensus 94 ~G~TpLH~Aa~~G~~eiVklLL~~G---------Advn~~d~~G~T~lpLh~Aa~~g~~eIv~~~~~~~~t~L~~Ai~~g 164 (1044)
..+.++..|...+..+..+.|+..+ -+++.+..-|.| .||.|..+.+ .+
T Consensus 100 ~d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET--~Lh~~lL~~~--------------------~~ 157 (782)
T KOG3676|consen 100 FDRDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGET--LLHKALLNLS--------------------DG 157 (782)
T ss_pred cchhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhh--HHHHHHhcCc--------------------hh
Confidence 3347888888889988888887765 455555566666 6666655432 34
Q ss_pred CHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhhhhhhHHHHhccCCCcccccchhhHHHHHHHHhcCCchHHH
Q 001613 165 NLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLHDSDLGAKEKTTIYECVIREALALGRATKLQ 244 (1044)
Q Consensus 165 ~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~~~~~~~l~~~~adin~~~~~~~~~~~i~~a~~~gg~t~L~ 244 (1044)
+.++++.|++.-..+- | .+.....+.|.||||
T Consensus 158 ~n~la~~LL~~~p~li--------------------------------------n----------d~~~~eeY~GqSaLH 189 (782)
T KOG3676|consen 158 HNELARVLLEIFPKLI--------------------------------------N----------DIYTSEEYYGQSALH 189 (782)
T ss_pred HHHHHHHHHHHhHHHh--------------------------------------h----------hhhhhHhhcCcchHH
Confidence 4577777775432110 0 001112234999999
Q ss_pred HHHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCCCCCccC-------CC--------------CCCcHHHHHHHcCCHHH
Q 001613 245 RAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCT-------DK--------------KVGPPLILATQAGDEDV 303 (1044)
Q Consensus 245 ~A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAdin~~~~-------d~--------------~G~TpLh~Aa~~G~~ei 303 (1044)
+|+.+.+.+. |++|++.|||++..+. |. .|..||-.||..++.++
T Consensus 190 iAIv~~~~~~--------------V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~ei 255 (782)
T KOG3676|consen 190 IAIVNRDAEL--------------VRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEI 255 (782)
T ss_pred HHHHhccHHH--------------HHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHH
Confidence 9999999988 9999999999986541 11 46789999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCe--eeecCCCCCcHHHHHHHcCCHHHH
Q 001613 304 IEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAI--VSQQNKLGLTALHIAAGSGNSQAL 381 (1044)
Q Consensus 304 Vk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAd--vn~~d~~G~TpLh~Aa~~g~~eiV 381 (1044)
|++|+++ |+|+ +.+|.+|+|.||..+..- ..++..+++++|++ ...+|+.|.|||.+||.-|..++.
T Consensus 256 vrlLl~~-gAd~--~aqDS~GNTVLH~lVi~~--------~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf 324 (782)
T KOG3676|consen 256 VRLLLAH-GADP--NAQDSNGNTVLHMLVIHF--------VTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMF 324 (782)
T ss_pred HHHHHhc-CCCC--CccccCCChHHHHHHHHH--------HHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHH
Confidence 9999998 9999 999999999999999886 88999999999999 888999999999999999999999
Q ss_pred HHHHhc
Q 001613 382 EDLIRK 387 (1044)
Q Consensus 382 klLL~~ 387 (1044)
+.+++.
T Consensus 325 ~~ile~ 330 (782)
T KOG3676|consen 325 QHILER 330 (782)
T ss_pred HHHHHh
Confidence 999987
No 76
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.51 E-value=1.5e-13 Score=145.25 Aligned_cols=127 Identities=31% Similarity=0.407 Sum_probs=120.7
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccch-----HHHHHHHHhcCC--
Q 001613 284 TDKKVGPPLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQ-----NRIVGILLKHGA-- 356 (1044)
Q Consensus 284 ~d~~G~TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~-----~~iVklLLe~GA-- 356 (1044)
.+..+.++++.|+..+..+++++|+.. |+++ +.++..|.||||+|+..+ + .+++++|++.|+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~--~~~~~~g~t~l~~a~~~~--------~~~~~~~~~~~~ll~~g~~~ 137 (235)
T COG0666 69 RDLDGRLPLHSAASKGDDKIVKLLLAS-GADV--NAKDADGDTPLHLAALNG--------NPPEGNIEVAKLLLEAGADL 137 (235)
T ss_pred CCccccCHHHHHHHcCcHHHHHHHHHc-CCCc--ccccCCCCcHHHHHHhcC--------CcccchHHHHHHHHHcCCCC
Confidence 467789999999999999999999999 9999 999999999999999999 7 999999999999
Q ss_pred -eeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q 001613 357 -IVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWG 422 (1044)
Q Consensus 357 -dvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~G 422 (1044)
+.+.+|..|+||||+|+..|+.+++++|++.+++ ++..+..|.|+|+.|+..++.++++.|++.+
T Consensus 138 ~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 138 DVNNLRDEDGNTPLHWAALNGDADIVELLLEAGAD-PNSRNSYGVTALDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred CCccccCCCCCchhHHHHHcCchHHHHHHHhcCCC-CcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence 5666799999999999999999999999999999 9999999999999999999999999999976
No 77
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.49 E-value=5.6e-13 Score=140.93 Aligned_cols=128 Identities=32% Similarity=0.341 Sum_probs=119.5
Q ss_pred CCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcCC-----HHHHHHHHhcCC--C
Q 001613 318 ADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGN-----SQALEDLIRKEP--D 390 (1044)
Q Consensus 318 n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g~-----~eiVklLL~~ga--d 390 (1044)
...+..+.+++|.++..+ ...++++|+..|++++.+|..|.||||+|+..++ .+++++||+.|+ +
T Consensus 67 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~ 138 (235)
T COG0666 67 AARDLDGRLPLHSAASKG--------DDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLD 138 (235)
T ss_pred ccCCccccCHHHHHHHcC--------cHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCC
Confidence 556777999999999999 8899999999999999999999999999999999 999999999999 5
Q ss_pred CcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHHHcChHHHHHHhhh
Q 001613 391 CINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLLKAANT 453 (1044)
Q Consensus 391 ~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~Ll~~~~~ 453 (1044)
..+.+|..|.||||+|+..|+.+++++|++.|++++.++..|.|++++|+..+...+++.+..
T Consensus 139 ~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~ 201 (235)
T COG0666 139 VNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLD 201 (235)
T ss_pred CccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHh
Confidence 588889999999999999999999999999999999999999999999999998888774444
No 78
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.49 E-value=6.7e-14 Score=124.04 Aligned_cols=113 Identities=29% Similarity=0.300 Sum_probs=102.7
Q ss_pred hHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHH
Q 001613 326 SALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFF 405 (1044)
Q Consensus 326 TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~ 405 (1044)
--+.|++++| .++-|+-.+..|-+||..= .|+||||+|+..|+.+++++|+..|++ ++.+|++|-|||-.
T Consensus 4 ~~~~W~vkNG--------~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~-i~~kDKygITPLLs 73 (117)
T KOG4214|consen 4 MSVAWNVKNG--------EIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGAN-IQDKDKYGITPLLS 73 (117)
T ss_pred hhHhhhhccC--------cHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccc-cCCccccCCcHHHH
Confidence 4578899999 8999999999998888654 899999999999999999999999999 99999999999999
Q ss_pred HHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHHHcChHHHH
Q 001613 406 AVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLL 448 (1044)
Q Consensus 406 Aa~~g~~~iVklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~Ll 448 (1044)
|+..||.++|++||++|||-..+.-+|.+.+..+-....+.||
T Consensus 74 AvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eate~edIr~LL 116 (117)
T KOG4214|consen 74 AVWEGHRDCVKLLLQNGADRTIHAPDGTALIEATEEEDIRELL 116 (117)
T ss_pred HHHHhhHHHHHHHHHcCcccceeCCCchhHHhhccHHHHHHHh
Confidence 9999999999999999999999999999988877666665554
No 79
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=7.3e-14 Score=143.82 Aligned_cols=81 Identities=35% Similarity=0.542 Sum_probs=75.8
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCeEEEE
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQARFVTIMGKEVEI 623 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~~~~~i~Gr~i~v 623 (1044)
+-..+|||||||+|++..+.||.+|++ ||+|.++.|+.|+.++ ||||||||+|.+.++|.+|++..+-.|+||+..+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeq-fGeI~eavvitd~~t~--rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNc 85 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQ-FGEIVEAVVITDKNTG--RSKGYGFVTFRDAEAATRACKDPNPIIDGRKANC 85 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHH-hCceEEEEEEeccCCc--cccceeeEEeecHHHHHHHhcCCCCccccccccc
Confidence 345789999999999999999999998 9999999999998877 8999999999999999999999889999999999
Q ss_pred cccC
Q 001613 624 KSAV 627 (1044)
Q Consensus 624 ~~A~ 627 (1044)
+.|-
T Consensus 86 nlA~ 89 (247)
T KOG0149|consen 86 NLAS 89 (247)
T ss_pred chhh
Confidence 9874
No 80
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.38 E-value=1.1e-12 Score=116.52 Aligned_cols=104 Identities=18% Similarity=0.279 Sum_probs=93.5
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHH
Q 001613 290 PPLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTAL 369 (1044)
Q Consensus 290 TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpL 369 (1044)
.-+.|++++|.++-|+-.+.. |.++ |.. ..|+||||+|+-.| +++++++|+..||+++.+|+.|.|||
T Consensus 4 ~~~~W~vkNG~~DeVk~~v~~-g~nV--n~~-~ggR~plhyAAD~G--------Ql~ilefli~iGA~i~~kDKygITPL 71 (117)
T KOG4214|consen 4 MSVAWNVKNGEIDEVKQSVNE-GLNV--NEI-YGGRTPLHYAADYG--------QLSILEFLISIGANIQDKDKYGITPL 71 (117)
T ss_pred hhHhhhhccCcHHHHHHHHHc-cccH--HHH-hCCcccchHhhhcc--------hHHHHHHHHHhccccCCccccCCcHH
Confidence 457899999999999999998 8888 655 48999999999999 99999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHH
Q 001613 370 HIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFA 406 (1044)
Q Consensus 370 h~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~A 406 (1044)
..|+..||.++|++||+.|++ -.....+|.+.+..+
T Consensus 72 LsAvwEGH~~cVklLL~~GAd-rt~~~PdG~~~~eat 107 (117)
T KOG4214|consen 72 LSAVWEGHRDCVKLLLQNGAD-RTIHAPDGTALIEAT 107 (117)
T ss_pred HHHHHHhhHHHHHHHHHcCcc-cceeCCCchhHHhhc
Confidence 999999999999999999999 777778887765443
No 81
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.36 E-value=7e-13 Score=132.61 Aligned_cols=84 Identities=33% Similarity=0.556 Sum_probs=78.4
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVE 622 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~ 622 (1044)
....++|||++|++.+++++|+++|++ ||.|.++.++.|+.++ ++||||||+|.++++|++|++. ++.+|+|++|+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg--~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~ 107 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETG--RSRGFGFVNFNDEGAATAAISEMDGKELNGRHIR 107 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhc-CCCeEEEEEEecCCCC--CcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 456789999999999999999999998 9999999999988766 8999999999999999999998 99999999999
Q ss_pred EcccCChh
Q 001613 623 IKSAVPKE 630 (1044)
Q Consensus 623 v~~A~~k~ 630 (1044)
|++|.++.
T Consensus 108 V~~a~~~~ 115 (144)
T PLN03134 108 VNPANDRP 115 (144)
T ss_pred EEeCCcCC
Confidence 99998764
No 82
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.32 E-value=4.3e-12 Score=157.29 Aligned_cols=106 Identities=26% Similarity=0.219 Sum_probs=100.9
Q ss_pred hHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHH
Q 001613 326 SALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFF 405 (1044)
Q Consensus 326 TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~ 405 (1044)
+.|+.|+..| +.+++++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|++ +|.+|..|.||||+
T Consensus 84 ~~L~~aa~~G--------~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad-vn~~d~~G~TpLh~ 154 (664)
T PTZ00322 84 VELCQLAASG--------DAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD-PTLLDKDGKTPLEL 154 (664)
T ss_pred HHHHHHHHcC--------CHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHH
Confidence 4689999999 99999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHcCCHHHHHHHHHC-------CCCcccccCCCCcHHHHHH
Q 001613 406 AVKNDHMVCAEVLLRW-------GANSEVLNLRRERPIDFAK 440 (1044)
Q Consensus 406 Aa~~g~~~iVklLL~~-------GAdin~~d~~G~TpLh~Aa 440 (1044)
|+.+|+.+++++|+++ ||+++..+..|.+|+..+.
T Consensus 155 A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~ 196 (664)
T PTZ00322 155 AEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS 196 (664)
T ss_pred HHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence 9999999999999999 9999999999998877654
No 83
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=2.8e-12 Score=137.20 Aligned_cols=82 Identities=27% Similarity=0.521 Sum_probs=76.5
Q ss_pred ccccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEE
Q 001613 543 TQEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEV 621 (1044)
Q Consensus 543 a~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i 621 (1044)
..+..++|+|.|+|+...|.+|+.+|++ ||.|.+|+|++.. .+ |||||||+|++.++|++|-++ +|..++||+|
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~k-fG~VldVEIIfNE-RG---SKGFGFVTmen~~dadRARa~LHgt~VEGRkI 166 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEK-FGKVLDVEIIFNE-RG---SKGFGFVTMENPADADRARAELHGTVVEGRKI 166 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHh-hCceeeEEEEecc-CC---CCccceEEecChhhHHHHHHHhhcceeeceEE
Confidence 3778899999999999999999999998 9999999999763 33 899999999999999999999 9999999999
Q ss_pred EEcccCCh
Q 001613 622 EIKSAVPK 629 (1044)
Q Consensus 622 ~v~~A~~k 629 (1044)
+|..|.+|
T Consensus 167 EVn~ATar 174 (376)
T KOG0125|consen 167 EVNNATAR 174 (376)
T ss_pred EEeccchh
Confidence 99999876
No 84
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.26 E-value=4.3e-12 Score=105.95 Aligned_cols=56 Identities=25% Similarity=0.447 Sum_probs=30.3
Q ss_pred HHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 001613 384 LIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFA 439 (1044)
Q Consensus 384 LL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~~G~TpLh~A 439 (1044)
||+++..++|.+|..|.||||+|+.+|+.++|++|+++|+|++.+|..|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 56777444888888888888888888888888888888888888888888888887
No 85
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=1.3e-11 Score=138.72 Aligned_cols=119 Identities=24% Similarity=0.304 Sum_probs=97.1
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHH
Q 001613 291 PLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALH 370 (1044)
Q Consensus 291 pLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh 370 (1044)
.|.-|+..|.+++|+..+.. --|+ ...+..|-||||-|+..| |.+||++||+.|++||+.|.+||||||
T Consensus 553 LLLDaaLeGEldlVq~~i~e-v~Dp--SqpNdEGITaLHNAiCag--------hyeIVkFLi~~ganVNa~DSdGWTPLH 621 (752)
T KOG0515|consen 553 LLLDAALEGELDLVQRIIYE-VTDP--SQPNDEGITALHNAICAG--------HYEIVKFLIEFGANVNAADSDGWTPLH 621 (752)
T ss_pred HHHhhhhcchHHHHHHHHHh-hcCC--CCCCccchhHHhhhhhcc--------hhHHHHHHHhcCCcccCccCCCCchhh
Confidence 35557888899999888887 5566 777888999999999888 899999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHH--HcCCHHHHHHHHH
Q 001613 371 IAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAV--KNDHMVCAEVLLR 420 (1044)
Q Consensus 371 ~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa--~~g~~~iVklLL~ 420 (1044)
+|+..++.-+++.|+++|+.-+-..-.++.||..-+- +.|+..|.+||-.
T Consensus 622 CAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~ 673 (752)
T KOG0515|consen 622 CAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG 673 (752)
T ss_pred hhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence 9999999999999999988833344467888877664 4678888888864
No 86
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.24 E-value=2e-11 Score=151.45 Aligned_cols=106 Identities=25% Similarity=0.293 Sum_probs=99.0
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHH
Q 001613 290 PPLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTAL 369 (1044)
Q Consensus 290 TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpL 369 (1044)
+.|+.|+..|+.++|++|++. |+++ |.+|..|.||||+|+..| +.+++++|+++|+++|.+|..|+|||
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~~-Gadi--n~~d~~G~TpLh~Aa~~g--------~~eiv~~LL~~Gadvn~~d~~G~TpL 152 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLTG-GADP--NCRDYDGRTPLHIACANG--------HVQVVRVLLEFGADPTLLDKDGKTPL 152 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHHC-CCCC--CCcCCCCCcHHHHHHHCC--------CHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence 468999999999999999999 9999 899999999999999999 99999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhc-------CCCCcccCCCCCCcHHHHHH
Q 001613 370 HIAAGSGNSQALEDLIRK-------EPDCINLKTIMMETPLFFAV 407 (1044)
Q Consensus 370 h~Aa~~g~~eiVklLL~~-------gad~in~~d~~G~TpLh~Aa 407 (1044)
|+|+..|+.+++++|+++ +++ ++..+..|.+|+..+.
T Consensus 153 h~A~~~g~~~iv~~Ll~~~~~~~~~ga~-~~~~~~~g~~~~~~~~ 196 (664)
T PTZ00322 153 ELAEENGFREVVQLLSRHSQCHFELGAN-AKPDSFTGKPPSLEDS 196 (664)
T ss_pred HHHHHCCcHHHHHHHHhCCCcccccCCC-CCccccCCCCccchhh
Confidence 999999999999999999 777 8888888888876554
No 87
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.24 E-value=5.8e-12 Score=145.07 Aligned_cols=161 Identities=18% Similarity=0.231 Sum_probs=111.8
Q ss_pred cccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEc
Q 001613 546 FKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIK 624 (1044)
Q Consensus 546 ~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~ 624 (1044)
...+|||++||..+++++|+++|++ ||+|.+++|++|+.++ ++||||||+|.+.++|++|++. ++..+.|++|.|.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~-~G~i~~v~i~~d~~~g--~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~ 78 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTS-IGEIESCKLVRDKVTG--QSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVS 78 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHc-cCCEEEEEEEEcCCCC--ccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEE
Confidence 4678999999999999999999998 9999999999998765 8999999999999999999998 9999999999999
Q ss_pred ccCChhHHHHHHHHHHHhhhhhhhhcccccCCCCCChhhHHHH--HhhhhhHHHhhhhccc--cCccccccchhhhcccc
Q 001613 625 SAVPKEVLFAELQKQSAQQQESKHEHQARLGAKIPDERTMEQI--ISRNAKEEIQTKKITE--EMPCRRVTEEATAEKSW 700 (1044)
Q Consensus 625 ~A~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~--l~~~~~~e~~~~~i~~--~~s~~~~~~~~~~~~~~ 700 (1044)
++.++... -.........+|...+..++ +.++.........+.. ....++++..+.....-
T Consensus 79 ~a~~~~~~---------------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~ 143 (352)
T TIGR01661 79 YARPSSDS---------------IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDE 143 (352)
T ss_pred eecccccc---------------cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHH
Confidence 99775410 01123556677877666655 3343332222222211 12344566666666555
Q ss_pred ccccccC-CCCCCCccccccccccc
Q 001613 701 AGRLLYG-QPKTSSNESQAYLVESF 724 (1044)
Q Consensus 701 ~~~~~~~-~~~~~~~~~~~~~~~~~ 724 (1044)
+.+++.. ++..-.....++.+...
T Consensus 144 A~~ai~~l~g~~~~g~~~~i~v~~a 168 (352)
T TIGR01661 144 ADRAIKTLNGTTPSGCTEPITVKFA 168 (352)
T ss_pred HHHHHHHhCCCccCCCceeEEEEEC
Confidence 6665554 33333333334444444
No 88
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.19 E-value=7e-11 Score=124.63 Aligned_cols=120 Identities=26% Similarity=0.264 Sum_probs=106.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeee-cCCCCC
Q 001613 288 VGPPLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQ-QNKLGL 366 (1044)
Q Consensus 288 G~TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~-~d~~G~ 366 (1044)
-..||.-|+..|+.+....||+. --.+ |..|..|.|+|..|+..| +.++|++||++|+|||. ++..+.
T Consensus 12 ~~~~Lle~i~Kndt~~a~~LLs~-vr~v--n~~D~sGMs~LahAaykG--------nl~~v~lll~~gaDvN~~qhg~~Y 80 (396)
T KOG1710|consen 12 PKSPLLEAIDKNDTEAALALLST-VRQV--NQRDPSGMSVLAHAAYKG--------NLTLVELLLELGADVNDKQHGTLY 80 (396)
T ss_pred hhhHHHHHHccCcHHHHHHHHHH-hhhh--hccCCCcccHHHHHHhcC--------cHHHHHHHHHhCCCcCcccccccc
Confidence 45789999999999999999986 4446 889999999999999999 99999999999999986 456789
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 001613 367 TALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLL 419 (1044)
Q Consensus 367 TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL 419 (1044)
||||+|+.+|+.++.++|++.|+. ....+.-|+|+-.+|+.-|+-++|..+-
T Consensus 81 TpLmFAALSGn~dvcrllldaGa~-~~~vNsvgrTAaqmAAFVG~H~CV~iIN 132 (396)
T KOG1710|consen 81 TPLMFAALSGNQDVCRLLLDAGAR-MYLVNSVGRTAAQMAAFVGHHECVAIIN 132 (396)
T ss_pred cHHHHHHHcCCchHHHHHHhccCc-cccccchhhhHHHHHHHhcchHHHHHHh
Confidence 999999999999999999999998 8899999999999999999988887653
No 89
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.18 E-value=1.5e-11 Score=102.65 Aligned_cols=55 Identities=44% Similarity=0.547 Sum_probs=33.5
Q ss_pred HHhcC-CeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHH
Q 001613 351 LLKHG-AIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFA 406 (1044)
Q Consensus 351 LLe~G-Advn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~A 406 (1044)
||++| +++|.+|..|.||||+||..|+.++|++||+.+++ ++.+|..|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d-~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD-PNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC-CCCCcCCCCCHHHhC
Confidence 67888 99999999999999999999999999999999998 999999999999998
No 90
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.17 E-value=5.3e-11 Score=98.55 Aligned_cols=54 Identities=39% Similarity=0.487 Sum_probs=43.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 001613 365 GLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLL 419 (1044)
Q Consensus 365 G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL 419 (1044)
|+||||+|+..|+.+++++|++++.+ +|.+|.+|+||||+|+.+|+.+++++||
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~d-in~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGAD-INAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSG-TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 68999999999999999999999888 9999999999999999999999999886
No 91
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.17 E-value=1.8e-11 Score=139.45 Aligned_cols=145 Identities=21% Similarity=0.248 Sum_probs=105.3
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVE 622 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~ 622 (1044)
....++|||++||+++++++|+++|++ ||.|.+|+|++|+.++ ++||||||+|.++++|++|++. ++..+.|++|+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~-~G~V~~v~i~~d~~tg--~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~ 180 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRT-IGPINTCRIMRDYKTG--YSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLK 180 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCC--ccCcEEEEEEccHHHHHHHHHHcCCCccCCceee
Confidence 345789999999999999999999998 9999999999988766 8999999999999999999998 99999999999
Q ss_pred EcccCChhHHHHHHHHHHHhhhhhhhhcccccCCCCCChhhHHHH--HhhhhhHHHhhhhcc-c--cCccccccchhhhc
Q 001613 623 IKSAVPKEVLFAELQKQSAQQQESKHEHQARLGAKIPDERTMEQI--ISRNAKEEIQTKKIT-E--EMPCRRVTEEATAE 697 (1044)
Q Consensus 623 v~~A~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~--l~~~~~~e~~~~~i~-~--~~s~~~~~~~~~~~ 697 (1044)
|.+|.+... .......+...+|..-++++| +.+...+ +....|. . .-..+.+...+...
T Consensus 181 V~~a~p~~~---------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~-V~~v~i~~d~~tg~~kG~aFV~F~~ 244 (346)
T TIGR01659 181 VSYARPGGE---------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQ-IVQKNILRDKLTGTPRGVAFVRFNK 244 (346)
T ss_pred eeccccccc---------------ccccceeEEeCCCCcccHHHHHHHHHhcCC-EEEEEEeecCCCCccceEEEEEECC
Confidence 999876421 001123566678877777665 3333222 2222221 1 11223456666666
Q ss_pred cccccccccC
Q 001613 698 KSWAGRLLYG 707 (1044)
Q Consensus 698 ~~~~~~~~~~ 707 (1044)
++-+.+++..
T Consensus 245 ~e~A~~Ai~~ 254 (346)
T TIGR01659 245 REEAQEAISA 254 (346)
T ss_pred HHHHHHHHHH
Confidence 5556665554
No 92
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.16 E-value=2e-11 Score=140.66 Aligned_cols=83 Identities=23% Similarity=0.295 Sum_probs=77.4
Q ss_pred ccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q 001613 545 EFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEI 623 (1044)
Q Consensus 545 ~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v 623 (1044)
...++|||+|||+++++++|+++|++ ||.|.+++|+.|+.++ ++||||||+|.+.++|.+|+.. +|..++||+|+|
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~-fG~v~~v~i~~d~~t~--~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V 343 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGP-FGAVQNVKIIRDLTTN--QCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQV 343 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEeEcCCCC--CccceEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34457999999999999999999998 9999999999988666 8999999999999999999998 999999999999
Q ss_pred cccCChh
Q 001613 624 KSAVPKE 630 (1044)
Q Consensus 624 ~~A~~k~ 630 (1044)
+++.+|+
T Consensus 344 ~~~~~~~ 350 (352)
T TIGR01661 344 SFKTNKA 350 (352)
T ss_pred EEccCCC
Confidence 9998875
No 93
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.15 E-value=5.8e-11 Score=98.29 Aligned_cols=54 Identities=39% Similarity=0.569 Sum_probs=46.8
Q ss_pred CchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcCCHHHHHHHH
Q 001613 324 GNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLI 385 (1044)
Q Consensus 324 G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL 385 (1044)
|+||||+|+..| +.+++++|+++|+++|.+|.+|+||||+|+..|+.+++++||
T Consensus 1 g~t~lh~A~~~g--------~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSG--------NLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT---------HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhC--------CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 789999999999 999999999999999999999999999999999999999996
No 94
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=8e-11 Score=130.70 Aligned_cols=116 Identities=25% Similarity=0.285 Sum_probs=97.4
Q ss_pred cCCCccccccccc--cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHH
Q 001613 531 KMNPGMCMIHAST--QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAA 608 (1044)
Q Consensus 531 ~d~~G~tpLh~aa--~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A 608 (1044)
+.+.|.-|-.|.. ......||||+||.++.|++|+.+|++ .|+|.++++|+|+.++ .+||||||+|.+.++|++|
T Consensus 65 qrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEk-iG~I~elRLMmD~~sG--~nRGYAFVtf~~Ke~Aq~A 141 (506)
T KOG0117|consen 65 QRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEK-IGKIYELRLMMDPFSG--DNRGYAFVTFCTKEEAQEA 141 (506)
T ss_pred ccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHh-ccceeeEEEeecccCC--CCcceEEEEeecHHHHHHH
Confidence 4444444444554 567889999999999999999999998 9999999999998776 7999999999999999999
Q ss_pred HHh-CCCcc-CCeEEEEcccCChhHHHHHHHHHHHhhhhhhhhcccccCCCCCChhhHHHHHhh
Q 001613 609 VQA-RFVTI-MGKEVEIKSAVPKEVLFAELQKQSAQQQESKHEHQARLGAKIPDERTMEQIISR 670 (1044)
Q Consensus 609 ~~~-~~~~i-~Gr~i~v~~A~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~l~~ 670 (1044)
++. |+++| .||.|.|..+..+- +.+.+.+|++++++++|..
T Consensus 142 ik~lnn~Eir~GK~igvc~Svan~---------------------RLFiG~IPK~k~keeIlee 184 (506)
T KOG0117|consen 142 IKELNNYEIRPGKLLGVCVSVANC---------------------RLFIGNIPKTKKKEEILEE 184 (506)
T ss_pred HHHhhCccccCCCEeEEEEeeecc---------------------eeEeccCCccccHHHHHHH
Confidence 999 88888 79999988776543 2666789999998877654
No 95
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.07 E-value=6.4e-10 Score=117.52 Aligned_cols=123 Identities=24% Similarity=0.205 Sum_probs=109.4
Q ss_pred CchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccC-CCCCCcH
Q 001613 324 GNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLK-TIMMETP 402 (1044)
Q Consensus 324 G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~-d~~G~Tp 402 (1044)
-..||.-++-.+ ..+-...||+---++|.+|..|+|+|..|+..|+.++|++||+.|+| +|.. +..+.||
T Consensus 12 ~~~~Lle~i~Kn--------dt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaD-vN~~qhg~~YTp 82 (396)
T KOG1710|consen 12 PKSPLLEAIDKN--------DTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGAD-VNDKQHGTLYTP 82 (396)
T ss_pred hhhHHHHHHccC--------cHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCC-cCcccccccccH
Confidence 457888888888 88888888887666999999999999999999999999999999999 7754 5778999
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHHHcChHHHHHHhhhcC
Q 001613 403 LFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLLKAANTCH 455 (1044)
Q Consensus 403 Lh~Aa~~g~~~iVklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~Ll~~~~~n~ 455 (1044)
||+|+..|+.++.++|++.||.+...|.-|+|+-.+|+.-|+-+.+...+...
T Consensus 83 LmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~~ 135 (396)
T KOG1710|consen 83 LMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNHI 135 (396)
T ss_pred HHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhccc
Confidence 99999999999999999999999999999999999999999777766544433
No 96
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.05 E-value=1e-10 Score=101.33 Aligned_cols=69 Identities=30% Similarity=0.596 Sum_probs=64.6
Q ss_pred eeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q 001613 550 IFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVE 622 (1044)
Q Consensus 550 ifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~ 622 (1044)
|||+|||..+++++|+++|++ ||.|..+.++.+ .+++++|||||+|.+.++|++|++. ++..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~-~g~i~~~~~~~~---~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQ-FGKIESIKVMRN---SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHT-TSTEEEEEEEEE---TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHH-hhhccccccccc---ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999998 999999999887 3447999999999999999999998 99999999985
No 97
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=3.7e-10 Score=127.29 Aligned_cols=102 Identities=23% Similarity=0.148 Sum_probs=86.5
Q ss_pred HHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHH
Q 001613 329 HCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVK 408 (1044)
Q Consensus 329 h~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~ 408 (1044)
.-|+..| .+++|+..+..--|+...|..|.|+||-|+..||++||++||+.|++ +|..|.+||||||.|+.
T Consensus 555 LDaaLeG--------EldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~gan-VNa~DSdGWTPLHCAAS 625 (752)
T KOG0515|consen 555 LDAALEG--------ELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGAN-VNAADSDGWTPLHCAAS 625 (752)
T ss_pred Hhhhhcc--------hHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCc-ccCccCCCCchhhhhhh
Confidence 3366667 88999999888888888899999999999999999999999999998 99999999999999999
Q ss_pred cCCHHHHHHHHHCCCCccccc-CCCCcHHHHH
Q 001613 409 NDHMVCAEVLLRWGANSEVLN-LRRERPIDFA 439 (1044)
Q Consensus 409 ~g~~~iVklLL~~GAdin~~d-~~G~TpLh~A 439 (1044)
.++..+++.|++.||-|-+.. .++.||.+-+
T Consensus 626 CNnv~~ckqLVe~GaavfAsTlSDmeTa~eKC 657 (752)
T KOG0515|consen 626 CNNVPMCKQLVESGAAVFASTLSDMETAAEKC 657 (752)
T ss_pred cCchHHHHHHHhccceEEeeecccccchhhhc
Confidence 999999999999998876654 4566766544
No 98
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=8.3e-11 Score=119.28 Aligned_cols=83 Identities=30% Similarity=0.520 Sum_probs=78.7
Q ss_pred ccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q 001613 545 EFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEI 623 (1044)
Q Consensus 545 ~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v 623 (1044)
.++++||||+|..++++.-|...|-. ||.|.++.+..|+.+. ++||||||+|...|+|.+|+.. |..++.||.|+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIP-FGDI~dIqiPlDyesq--kHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirV 84 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIP-FGDIKDIQIPLDYESQ--KHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRV 84 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhcccc-ccchhhcccccchhcc--cccceeEEEeeccchhHHHhhcCchhhhcceeEEE
Confidence 46899999999999999999999999 9999999999999887 8999999999999999999999 999999999999
Q ss_pred cccCChh
Q 001613 624 KSAVPKE 630 (1044)
Q Consensus 624 ~~A~~k~ 630 (1044)
..|.|..
T Consensus 85 N~AkP~k 91 (298)
T KOG0111|consen 85 NLAKPEK 91 (298)
T ss_pred eecCCcc
Confidence 9998853
No 99
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=4.1e-10 Score=116.72 Aligned_cols=81 Identities=26% Similarity=0.349 Sum_probs=76.4
Q ss_pred cccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEc
Q 001613 546 FKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIK 624 (1044)
Q Consensus 546 ~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~ 624 (1044)
...+|-|.||+.++++++|+++|.+ ||.|..+.|.+|+.|+ .+||||||+|.+.++|.+|++. +|+-++.-.|+|.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~-fg~i~rvylardK~TG--~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRP-FGPITRVYLARDKETG--LSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhc-cCccceeEEEEccccC--cccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 4457999999999999999999998 9999999999988877 8999999999999999999999 9999999999999
Q ss_pred ccCCh
Q 001613 625 SAVPK 629 (1044)
Q Consensus 625 ~A~~k 629 (1044)
|+.|+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99886
No 100
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=2.4e-10 Score=121.28 Aligned_cols=96 Identities=22% Similarity=0.351 Sum_probs=85.7
Q ss_pred ccccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEE
Q 001613 543 TQEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEV 621 (1044)
Q Consensus 543 a~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i 621 (1044)
..+.-++|||+-|+++++|..|+..|++ ||.|+.+.++.|+.++ +|+|||||+|+++.++..|.+. +|..|+|+.|
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~-YG~IkrirlV~d~vTg--kskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEK-YGPIKRIRLVRDKVTG--KSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHh-cCcceeEEEeeecccC--CccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 3678899999999999999999999998 9999999999998877 8999999999999999999999 9999999999
Q ss_pred EEcccCChhHHHHHHHHHHH
Q 001613 622 EIKSAVPKEVLFAELQKQSA 641 (1044)
Q Consensus 622 ~v~~A~~k~~~~~~~~~~~~ 641 (1044)
.|+.-..+....|...+..+
T Consensus 174 ~VDvERgRTvkgW~PRRLGG 193 (335)
T KOG0113|consen 174 LVDVERGRTVKGWLPRRLGG 193 (335)
T ss_pred EEEecccccccccccccccC
Confidence 99988776655555544433
No 101
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.97 E-value=4e-10 Score=120.63 Aligned_cols=77 Identities=21% Similarity=0.244 Sum_probs=70.9
Q ss_pred cccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCeEEEEcc
Q 001613 546 FKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQARFVTIMGKEVEIKS 625 (1044)
Q Consensus 546 ~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~~~~~i~Gr~i~v~~ 625 (1044)
..++|||+||++.+++++|+++|+. ||+|.++++++++. ++|||||+|.++++|+.|+..+|..|.||+|.|.+
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~-~G~I~~V~I~~d~~-----~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~ 76 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSF-SGDIEYVEMQSENE-----RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITP 76 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeecCC-----CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEe
Confidence 3579999999999999999999998 99999999988753 57999999999999999998899999999999999
Q ss_pred cCC
Q 001613 626 AVP 628 (1044)
Q Consensus 626 A~~ 628 (1044)
+..
T Consensus 77 a~~ 79 (260)
T PLN03120 77 AED 79 (260)
T ss_pred ccC
Confidence 863
No 102
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.96 E-value=4.7e-10 Score=134.47 Aligned_cols=82 Identities=21% Similarity=0.410 Sum_probs=76.2
Q ss_pred cccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEc
Q 001613 546 FKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIK 624 (1044)
Q Consensus 546 ~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~ 624 (1044)
..++|||+||+.++++++|+++|++ ||.|.++++++|+.++ ++||||||+|.+.++|.+|++. |+.+|+|+.|+|.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~-FG~I~svrl~~D~~tg--ksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~ 279 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEA-FGEIVKCQLARAPTGR--GHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 279 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhh-cCCeeEEEEEecCCCC--CcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3468999999999999999999998 9999999999888765 8999999999999999999999 9999999999999
Q ss_pred ccCChh
Q 001613 625 SAVPKE 630 (1044)
Q Consensus 625 ~A~~k~ 630 (1044)
+|.++.
T Consensus 280 kAi~pP 285 (612)
T TIGR01645 280 KCVTPP 285 (612)
T ss_pred ecCCCc
Confidence 998643
No 103
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=2.2e-10 Score=113.50 Aligned_cols=76 Identities=25% Similarity=0.553 Sum_probs=71.6
Q ss_pred ccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEcc
Q 001613 547 KSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIKS 625 (1044)
Q Consensus 547 ~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~~ 625 (1044)
..-|||||||+..+|.++...|++ ||+|.++.+++|+.|+ +|+||+|..|++..+-.-|+.. ||..|.||.|+|+-
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSq-yGe~vdinLiRDk~TG--KSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQ-YGEIVDINLIRDKKTG--KSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeec-cCceEEEEEEecCCCC--cccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 346999999999999999999998 9999999999988776 8999999999999999999999 99999999999984
No 104
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.95 E-value=3.8e-10 Score=135.30 Aligned_cols=80 Identities=21% Similarity=0.461 Sum_probs=74.3
Q ss_pred ccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q 001613 545 EFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEI 623 (1044)
Q Consensus 545 ~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v 623 (1044)
...++||||||++++++++|+++|++ ||.|.++++++|+.++ ++||||||+|.+.++|++|++. +|..++||+|+|
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~-fG~I~sV~I~~D~~Tg--kskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV 181 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDP-FGPIKSINMSWDPATG--KHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKV 181 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHc-cCCEEEEEEeecCCCC--CcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeee
Confidence 34578999999999999999999998 9999999999988766 8999999999999999999998 999999999999
Q ss_pred cccC
Q 001613 624 KSAV 627 (1044)
Q Consensus 624 ~~A~ 627 (1044)
.+..
T Consensus 182 ~rp~ 185 (612)
T TIGR01645 182 GRPS 185 (612)
T ss_pred cccc
Confidence 8654
No 105
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=5.8e-10 Score=123.40 Aligned_cols=174 Identities=20% Similarity=0.200 Sum_probs=122.0
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh--CCCccCC--e
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA--RFVTIMG--K 619 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~--~~~~i~G--r 619 (1044)
+...-|+|||-+|..++|.++|++|++ ||.|.+|.|++|+.++ .++||+||+|.+.++|.+|+.+ |...+-| .
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~-yg~V~einl~kDk~t~--~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~ 107 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEK-YGNVYEINLIKDKSTG--QSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH 107 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHH-hCceeEEEeecccccC--cccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence 455679999999999999999999998 9999999999999887 8999999999999999999999 5567766 5
Q ss_pred EEEEcccCChhHHHHHHHHHHHhhhhhhhhcccccCCCCCChhhHHHH--HhhhhhHHHhhhhcc-ccCccccccchhhh
Q 001613 620 EVEIKSAVPKEVLFAELQKQSAQQQESKHEHQARLGAKIPDERTMEQI--ISRNAKEEIQTKKIT-EEMPCRRVTEEATA 696 (1044)
Q Consensus 620 ~i~v~~A~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~--l~~~~~~e~~~~~i~-~~~s~~~~~~~~~~ 696 (1044)
+|.|+.|....... -.....+...+++..++.++ +.+.......-..++ ...-|++-.+....
T Consensus 108 pvqvk~Ad~E~er~--------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fs 173 (510)
T KOG0144|consen 108 PVQVKYADGERERI--------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFS 173 (510)
T ss_pred ceeecccchhhhcc--------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEe
Confidence 78888885422100 01122445556654444333 444433333333333 44455666677777
Q ss_pred ccccccccccC-CCC-CCCcccccccccccc-ccCchhhhhhh
Q 001613 697 EKSWAGRLLYG-QPK-TSSNESQAYLVESFE-EKSMPKWLRTF 736 (1044)
Q Consensus 697 ~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~ 736 (1044)
.|+++-.++-+ +++ |=-.+++|+||++.. .+. +-.+++
T Consensus 174 tke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd--k~~~~l 214 (510)
T KOG0144|consen 174 TKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKD--KDGKRL 214 (510)
T ss_pred hHHHHHHHHHhhccceeeccCCCceEEEecccCCC--chHHHH
Confidence 77777766666 554 555788999999984 444 445554
No 106
>PLN03213 repressor of silencing 3; Provisional
Probab=98.94 E-value=4.8e-10 Score=125.03 Aligned_cols=78 Identities=19% Similarity=0.320 Sum_probs=70.7
Q ss_pred ccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCH--HHHHHHHHh-CCCccCCeEE
Q 001613 545 EFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHE--KSAAAAVQA-RFVTIMGKEV 621 (1044)
Q Consensus 545 ~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~--e~a~~A~~~-~~~~i~Gr~i 621 (1044)
....+||||||++.+++++|+..|.+ ||.|.++.|+ +.+ | ||||||+|.+. +++.+|+.. +|.++.||.|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSe-FGsVkdVEIp--RET--G--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~L 80 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSP-MGTVDAVEFV--RTK--G--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRL 80 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEe--ccc--C--CceEEEEecCCcHHHHHHHHHHhcCCeecCcee
Confidence 34578999999999999999999998 9999999998 333 3 99999999987 789999999 9999999999
Q ss_pred EEcccCCh
Q 001613 622 EIKSAVPK 629 (1044)
Q Consensus 622 ~v~~A~~k 629 (1044)
+|..|.+.
T Consensus 81 KVNKAKP~ 88 (759)
T PLN03213 81 RLEKAKEH 88 (759)
T ss_pred EEeeccHH
Confidence 99999773
No 107
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=6.1e-10 Score=116.71 Aligned_cols=81 Identities=28% Similarity=0.435 Sum_probs=76.1
Q ss_pred ccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEcc
Q 001613 547 KSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIKS 625 (1044)
Q Consensus 547 ~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~~ 625 (1044)
.--+|||-|..+++.+.||+.|.+ ||+|.+++|++|..|+ +|||||||.|-..++|++||.. +|.-|++|.|+-.|
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~p-FGevS~akvirD~~T~--KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAP-FGEVSDAKVIRDMNTG--KSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW 138 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhcc-ccccccceEeecccCC--cccceeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence 346899999999999999999998 9999999999988777 8999999999999999999999 99999999999999
Q ss_pred cCChh
Q 001613 626 AVPKE 630 (1044)
Q Consensus 626 A~~k~ 630 (1044)
|..|.
T Consensus 139 ATRKp 143 (321)
T KOG0148|consen 139 ATRKP 143 (321)
T ss_pred cccCc
Confidence 98765
No 108
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.93 E-value=1.2e-09 Score=133.99 Aligned_cols=89 Identities=31% Similarity=0.378 Sum_probs=79.8
Q ss_pred cccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEc
Q 001613 546 FKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIK 624 (1044)
Q Consensus 546 ~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~ 624 (1044)
...+|||+||+..+++++|+++|++ ||.|.+++++.|. +|++||||||+|.+.++|.+|+.. ++..++||+|.|.
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~-~G~i~~~~i~~d~---~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~ 359 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSE-CGEITSAKVMLDE---KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVA 359 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHh-cCCeEEEEEEECC---CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEE
Confidence 4567999999999999999999998 9999999999883 347999999999999999999998 9999999999999
Q ss_pred ccCChhHHHHHHHH
Q 001613 625 SAVPKEVLFAELQK 638 (1044)
Q Consensus 625 ~A~~k~~~~~~~~~ 638 (1044)
+|..++......+.
T Consensus 360 ~a~~k~~~~~~~~~ 373 (562)
T TIGR01628 360 LAQRKEQRRAHLQD 373 (562)
T ss_pred eccCcHHHHHHHHH
Confidence 99988765554443
No 109
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.92 E-value=8.1e-10 Score=96.29 Aligned_cols=69 Identities=30% Similarity=0.606 Sum_probs=62.3
Q ss_pred eeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q 001613 550 IFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVE 622 (1044)
Q Consensus 550 ifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~ 622 (1044)
|||+|||+.+++++|+++|++ ||.|..+.+..+++ + +++|+|||+|.++++|.+|++. ++..++||.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~-~g~v~~v~~~~~~~-~--~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSR-FGPVEKVRLIKNKD-G--QSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTT-SSBEEEEEEEESTT-S--SEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEeeec-c--ccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 789999999999999999998 99999999988766 3 7999999999999999999999 77999999985
No 110
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.91 E-value=4.2e-10 Score=113.57 Aligned_cols=80 Identities=29% Similarity=0.459 Sum_probs=75.5
Q ss_pred ccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q 001613 545 EFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEI 623 (1044)
Q Consensus 545 ~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v 623 (1044)
+....|.|-||.+.++.++|+..|++ ||.|-+|.|.+|+.|. .+||||||.|.+..+|+.|+++ +|..++|+.|.|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFek-YG~vgDVyIPrdr~Tr--~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEK-YGRVGDVYIPRDRYTR--QSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHH-hCcccceecccccccc--cccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 45667899999999999999999998 9999999999999887 7999999999999999999999 999999999999
Q ss_pred cccC
Q 001613 624 KSAV 627 (1044)
Q Consensus 624 ~~A~ 627 (1044)
++|.
T Consensus 88 q~ar 91 (256)
T KOG4207|consen 88 QMAR 91 (256)
T ss_pred hhhh
Confidence 9885
No 111
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.89 E-value=1.3e-09 Score=124.33 Aligned_cols=81 Identities=25% Similarity=0.410 Sum_probs=73.4
Q ss_pred cccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCC--eEEE
Q 001613 546 FKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMG--KEVE 622 (1044)
Q Consensus 546 ~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~G--r~i~ 622 (1044)
..++|||+||+..+++++|+++|++ ||+|..+.|++|+.++ ++||||||+|++.++|++|++. ++..++| ++|.
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~-fG~V~~v~i~~d~~tg--~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~ 268 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGK-YGQIVQKNILRDKLTG--TPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLT 268 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHh-cCCEEEEEEeecCCCC--ccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEE
Confidence 3568999999999999999999998 9999999999887665 7999999999999999999999 9988876 7899
Q ss_pred EcccCCh
Q 001613 623 IKSAVPK 629 (1044)
Q Consensus 623 v~~A~~k 629 (1044)
|++|..+
T Consensus 269 V~~a~~~ 275 (346)
T TIGR01659 269 VRLAEEH 275 (346)
T ss_pred EEECCcc
Confidence 9998764
No 112
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.86 E-value=2.2e-09 Score=128.67 Aligned_cols=99 Identities=30% Similarity=0.396 Sum_probs=82.4
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccC-CeEE
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIM-GKEV 621 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~-Gr~i 621 (1044)
.+...+|||++||.++++++|+++|++ ||.|.+++|++| .+ |++||||||+|.+.++|++|++. ++.++. |+.+
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~-~G~I~~vrl~~D-~s--G~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l 130 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEK-AGPIYELRLMMD-FS--GQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLL 130 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHh-hCCEEEEEEEEC-CC--CCccceEEEEeCCHHHHHHHHHHcCCCeecCCccc
Confidence 456789999999999999999999998 999999999999 33 47999999999999999999999 888884 8888
Q ss_pred EEcccCChhHHHHHHHHHHHhhhhhhhhcccccCCCCCChhhHHHH
Q 001613 622 EIKSAVPKEVLFAELQKQSAQQQESKHEHQARLGAKIPDERTMEQI 667 (1044)
Q Consensus 622 ~v~~A~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 667 (1044)
.|.++... ...+...+|...+.+++
T Consensus 131 ~V~~S~~~---------------------~rLFVgNLP~~~TeeeL 155 (578)
T TIGR01648 131 GVCISVDN---------------------CRLFVGGIPKNKKREEI 155 (578)
T ss_pred cccccccC---------------------ceeEeecCCcchhhHHH
Confidence 88766432 23555667777666655
No 113
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.86 E-value=6.2e-10 Score=123.46 Aligned_cols=82 Identities=39% Similarity=0.622 Sum_probs=78.7
Q ss_pred cccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCeEEEEcc
Q 001613 546 FKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQARFVTIMGKEVEIKS 625 (1044)
Q Consensus 546 ~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~~~~~i~Gr~i~v~~ 625 (1044)
...|+|+|+|+|+++++.|+++|.+ ||+|.++.+|+|+.++ |+||||||+|++.+.+.+++....+.|+||.|+++.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~-~Gev~d~~vm~d~~t~--rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~ 81 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQ-FGEVTDCVVMRDPSTG--RSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKR 81 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcc-cCceeeEEEeccCCCC--CcccccceecCCCcchheeecccccccCCcccccee
Confidence 5679999999999999999999998 9999999999999885 999999999999999999999999999999999999
Q ss_pred cCChh
Q 001613 626 AVPKE 630 (1044)
Q Consensus 626 A~~k~ 630 (1044)
|.|++
T Consensus 82 av~r~ 86 (311)
T KOG4205|consen 82 AVSRE 86 (311)
T ss_pred ccCcc
Confidence 99987
No 114
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.80 E-value=3.1e-09 Score=130.33 Aligned_cols=76 Identities=28% Similarity=0.489 Sum_probs=71.9
Q ss_pred ceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEcccC
Q 001613 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIKSAV 627 (1044)
Q Consensus 549 kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~~A~ 627 (1044)
.||||+|+.++++++|+++|++ ||.|.+|+|++|+.++ +++|||||+|.+.++|.+|++. ++..+.|++|+|.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~-~G~v~~v~v~~d~~t~--~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKP-FGPVLSVRVCRDSVTR--RSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCC--CcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 6999999999999999999998 9999999999988766 8999999999999999999998 8888999999999975
No 115
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.79 E-value=2.3e-09 Score=118.80 Aligned_cols=80 Identities=31% Similarity=0.431 Sum_probs=72.7
Q ss_pred ccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CC-CccCC--eEEE
Q 001613 547 KSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RF-VTIMG--KEVE 622 (1044)
Q Consensus 547 ~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~-~~i~G--r~i~ 622 (1044)
.+|||||-|+..++|.++++.|++ ||.|++|.|++|.++. |||||||+|.+.|-|..|+++ |+ ..++| -++.
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~-fG~Ied~~ilrd~~~~---sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLV 199 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSR-FGHIEDCYILRDPDGL---SRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLV 199 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHh-hCccchhhheeccccc---ccceeEEEEehHHHHHHHHHhhccceeeccCCCceE
Confidence 579999999999999999999998 9999999999998775 999999999999999999999 66 56777 5899
Q ss_pred EcccCChh
Q 001613 623 IKSAVPKE 630 (1044)
Q Consensus 623 v~~A~~k~ 630 (1044)
|+||.++.
T Consensus 200 VkFADtqk 207 (510)
T KOG0144|consen 200 VKFADTQK 207 (510)
T ss_pred EEecccCC
Confidence 99997643
No 116
>smart00361 RRM_1 RNA recognition motif.
Probab=98.76 E-value=1.2e-08 Score=89.24 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=55.4
Q ss_pred CCCCCCccc----cCCCCcceEE-EeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEc
Q 001613 561 SDSLGGYFE----KHFGPIEDAR-VAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIK 624 (1044)
Q Consensus 561 e~~Lr~~F~----~~fG~v~~~~-v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~ 624 (1044)
+++|+++|+ + ||.|.++. ++.++.+..|++||||||+|.+.++|.+|+.. +|..++||.|.+.
T Consensus 2 ~~~l~~~~~~~~~~-fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEY-FGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHh-cCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 567888887 8 99999996 77777664468999999999999999999999 9999999999863
No 117
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.76 E-value=3e-09 Score=118.02 Aligned_cols=82 Identities=43% Similarity=0.692 Sum_probs=79.1
Q ss_pred cccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCeEEEEcc
Q 001613 546 FKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQARFVTIMGKEVEIKS 625 (1044)
Q Consensus 546 ~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~~~~~i~Gr~i~v~~ 625 (1044)
..+|||||+++..+++.+++++|++ ||.|.++.++.|+.+. ++||||||+|.+++++++++....+.+.|+.++|++
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~-~g~v~~~~~~~d~~~~--~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkr 172 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQ-FGKVADVVIMYDKTTS--RPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKR 172 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhc-cceeEeeEEeeccccc--ccccceeeEeccccccceecccceeeecCceeeEee
Confidence 5779999999999999999999998 9999999999999888 899999999999999999999999999999999999
Q ss_pred cCChh
Q 001613 626 AVPKE 630 (1044)
Q Consensus 626 A~~k~ 630 (1044)
|.||+
T Consensus 173 A~pk~ 177 (311)
T KOG4205|consen 173 AIPKE 177 (311)
T ss_pred ccchh
Confidence 99997
No 118
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.75 E-value=6.3e-09 Score=124.34 Aligned_cols=82 Identities=20% Similarity=0.328 Sum_probs=75.3
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCeEEEE
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQARFVTIMGKEVEI 623 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~~~~~i~Gr~i~v 623 (1044)
....++|||+|||..+++++|+++|++ ||.|.++.++.|+.++ ++||||||+|.+.++|.+|+..++..+.|++|.|
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~-~G~v~~v~i~~d~~~~--~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v 162 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSK-VGKVRDVQCIKDRNSR--RSKGVAYVEFYDVESVIKALALTGQMLLGRPIIV 162 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEeecCCCC--CcceEEEEEECCHHHHHHHHHhCCCEECCeeeEE
Confidence 345679999999999999999999998 9999999999887665 8999999999999999999998999999999999
Q ss_pred cccCC
Q 001613 624 KSAVP 628 (1044)
Q Consensus 624 ~~A~~ 628 (1044)
+.+..
T Consensus 163 ~~~~~ 167 (457)
T TIGR01622 163 QSSQA 167 (457)
T ss_pred eecch
Confidence 87654
No 119
>smart00362 RRM_2 RNA recognition motif.
Probab=98.74 E-value=1e-08 Score=88.10 Aligned_cols=71 Identities=34% Similarity=0.640 Sum_probs=65.4
Q ss_pred ceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEc
Q 001613 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIK 624 (1044)
Q Consensus 549 kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~ 624 (1044)
+||++|+|..+++++++++|.+ ||.|..+.+..++ +.++|+|||+|.+.++|++|++. ++..+.|+++.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~-~g~v~~~~~~~~~----~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSK-FGPIESVKIPKDT----GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHh-cCCEEEEEEecCC----CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999998 9999999988765 46899999999999999999998 8899999999874
No 120
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.74 E-value=6.3e-09 Score=103.06 Aligned_cols=76 Identities=28% Similarity=0.446 Sum_probs=69.7
Q ss_pred ccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q 001613 545 EFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEI 623 (1044)
Q Consensus 545 ~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v 623 (1044)
...+|||||||+..+++.+|...|.. ||.+..+.|.. .+.|||||+|+++.+|+.|+.. +|..|.|..|.|
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~-yG~lrsvWvAr-------nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rV 79 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSK-YGPLRSVWVAR-------NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRV 79 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHh-cCcceeEEEee-------cCCCceEEeccCcccHHHHHhhcCCccccCceEEE
Confidence 34689999999999999999999998 99999999965 3789999999999999999999 999999999999
Q ss_pred cccCC
Q 001613 624 KSAVP 628 (1044)
Q Consensus 624 ~~A~~ 628 (1044)
....-
T Consensus 80 E~S~G 84 (195)
T KOG0107|consen 80 ELSTG 84 (195)
T ss_pred EeecC
Confidence 87753
No 121
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.72 E-value=9.2e-09 Score=108.56 Aligned_cols=76 Identities=21% Similarity=0.128 Sum_probs=69.8
Q ss_pred cccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCeEEEEcc
Q 001613 546 FKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQARFVTIMGKEVEIKS 625 (1044)
Q Consensus 546 ~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~~~~~i~Gr~i~v~~ 625 (1044)
..++|||+||++.+++++|+++|+. ||+|.++++++|. +++|||||+|.++++++.|+..+|..|.|++|.|..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~-~G~I~~V~I~~D~-----et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSH-CGAIEHVEIIRSG-----EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITR 77 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHh-cCCeEEEEEecCC-----CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEe
Confidence 3478999999999999999999998 9999999998773 466899999999999999998899999999999987
Q ss_pred cC
Q 001613 626 AV 627 (1044)
Q Consensus 626 A~ 627 (1044)
+.
T Consensus 78 ~~ 79 (243)
T PLN03121 78 WG 79 (243)
T ss_pred Cc
Confidence 64
No 122
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.2e-08 Score=107.08 Aligned_cols=76 Identities=28% Similarity=0.454 Sum_probs=70.4
Q ss_pred ccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q 001613 545 EFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEI 623 (1044)
Q Consensus 545 ~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v 623 (1044)
...++||+||++..++|+.+|+.|++ ||.|.+|+|.+ -+||+||.|+++|.|..||.. |+.+|.|..|++
T Consensus 162 p~NtsVY~G~I~~~lte~~mr~~Fs~-fG~I~EVRvFk--------~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkC 232 (321)
T KOG0148|consen 162 PDNTSVYVGNIASGLTEDLMRQTFSP-FGPIQEVRVFK--------DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRC 232 (321)
T ss_pred CCCceEEeCCcCccccHHHHHHhccc-CCcceEEEEec--------ccceEEEEecchhhHHHHHHHhcCceeCceEEEE
Confidence 35678999999999999999999998 99999999975 489999999999999999999 999999999999
Q ss_pred cccCCh
Q 001613 624 KSAVPK 629 (1044)
Q Consensus 624 ~~A~~k 629 (1044)
.|-+..
T Consensus 233 sWGKe~ 238 (321)
T KOG0148|consen 233 SWGKEG 238 (321)
T ss_pred eccccC
Confidence 997643
No 123
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.69 E-value=1.2e-08 Score=123.50 Aligned_cols=82 Identities=21% Similarity=0.440 Sum_probs=75.7
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVE 622 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~ 622 (1044)
.+..++|||||||..+++++|+++|++ ||.|..+.++.++.++ +++|||||+|.+.++|..|++. ++..|+|+.|.
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~g--~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~ 368 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLES-FGDLKAFNLIKDIATG--LSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLH 368 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEecCCCC--CcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 356789999999999999999999998 9999999998887655 8999999999999999999998 99999999999
Q ss_pred EcccCC
Q 001613 623 IKSAVP 628 (1044)
Q Consensus 623 v~~A~~ 628 (1044)
|.+|..
T Consensus 369 v~~a~~ 374 (509)
T TIGR01642 369 VQRACV 374 (509)
T ss_pred EEECcc
Confidence 999864
No 124
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.69 E-value=1.1e-08 Score=116.25 Aligned_cols=84 Identities=29% Similarity=0.409 Sum_probs=77.6
Q ss_pred cccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEc
Q 001613 546 FKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIK 624 (1044)
Q Consensus 546 ~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~ 624 (1044)
..++|.|.||||.+.+.+|..+|++ ||.|.++.|++.++++ ..|||||.|....+|..|++. |+++|+||+|-|+
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~-~G~V~Ei~IP~k~dgk---lcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVD 191 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSN-FGKVVEIVIPRKKDGK---LCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVD 191 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhh-cceEEEEEcccCCCCC---ccceEEEEEeeHHHHHHHHHhccCceecCceeEEe
Confidence 3789999999999999999999998 9999999998777766 569999999999999999999 9999999999999
Q ss_pred ccCChhHHH
Q 001613 625 SAVPKEVLF 633 (1044)
Q Consensus 625 ~A~~k~~~~ 633 (1044)
||.+|....
T Consensus 192 WAV~Kd~ye 200 (678)
T KOG0127|consen 192 WAVDKDTYE 200 (678)
T ss_pred eeccccccc
Confidence 999987554
No 125
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.67 E-value=1.5e-08 Score=121.07 Aligned_cols=79 Identities=29% Similarity=0.514 Sum_probs=74.2
Q ss_pred ccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEcc
Q 001613 547 KSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIKS 625 (1044)
Q Consensus 547 ~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~~ 625 (1044)
.++|||+||+..+++++|+++|++ ||.|..+.++.++.++ +++|||||+|.+.++|.+|++. +|..|.|++|.|.+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~-~G~i~~v~~~~d~~~g--~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEP-FGDIEDVQLHRDPETG--RSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGY 262 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCC--ccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEE
Confidence 678999999999999999999998 9999999999887664 7999999999999999999998 99999999999999
Q ss_pred cCC
Q 001613 626 AVP 628 (1044)
Q Consensus 626 A~~ 628 (1044)
|..
T Consensus 263 a~~ 265 (457)
T TIGR01622 263 AQD 265 (457)
T ss_pred ccC
Confidence 863
No 126
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.67 E-value=9.2e-09 Score=96.72 Aligned_cols=80 Identities=20% Similarity=0.327 Sum_probs=75.2
Q ss_pred ccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q 001613 545 EFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEI 623 (1044)
Q Consensus 545 ~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v 623 (1044)
....+||||||++.++|+++.++|++ .|+|..+.+-.|+.+. .+-||+||+|-+.++|..|+.- +++.++.|+|.+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~-cG~irriiMGLdr~kk--tpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~ 110 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSK-CGDIRRIIMGLDRFKK--TPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRI 110 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHh-ccchheeEeccccCCc--CccceEEEEEecchhHHHHHHHhccCcccccceee
Confidence 35679999999999999999999998 9999999998999888 5999999999999999999999 999999999999
Q ss_pred cccC
Q 001613 624 KSAV 627 (1044)
Q Consensus 624 ~~A~ 627 (1044)
+|-.
T Consensus 111 D~D~ 114 (153)
T KOG0121|consen 111 DWDA 114 (153)
T ss_pred eccc
Confidence 9864
No 127
>smart00360 RRM RNA recognition motif.
Probab=98.67 E-value=2e-08 Score=85.82 Aligned_cols=70 Identities=34% Similarity=0.568 Sum_probs=63.5
Q ss_pred ccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEc
Q 001613 552 VGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIK 624 (1044)
Q Consensus 552 Vg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~ 624 (1044)
|+|+|..+++++++++|.+ ||.|..+.+..++.+ ++++|||||+|.+.++|.+|++. ++..++|+.+.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~-~g~v~~~~i~~~~~~--~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSK-FGKIESVRLVRDKDT--GKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHh-hCCEeEEEEEeCCCC--CCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5789999999999999998 999999999877654 47999999999999999999998 8899999999874
No 128
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.66 E-value=3e-08 Score=103.22 Aligned_cols=83 Identities=25% Similarity=0.270 Sum_probs=77.4
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVE 622 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~ 622 (1044)
....+-|||-||..+.+|.-|.++|.+ ||.|..++|++|..++ ++||||||++.+.++|.-|+.. ||..+++|.+.
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgp-FGAv~nVKvirD~ttn--kCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQ 351 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGP-FGAVTNVKVIRDFTTN--KCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 351 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCc-ccceeeEEEEecCCcc--cccceeEEEecchHHHHHHHHHhcCccccceEEE
Confidence 445788999999999999999999999 9999999999999988 8999999999999999999999 99999999999
Q ss_pred EcccCCh
Q 001613 623 IKSAVPK 629 (1044)
Q Consensus 623 v~~A~~k 629 (1044)
|.+-..|
T Consensus 352 VsFKtnk 358 (360)
T KOG0145|consen 352 VSFKTNK 358 (360)
T ss_pred EEEecCC
Confidence 9876544
No 129
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.65 E-value=6.9e-09 Score=103.41 Aligned_cols=81 Identities=21% Similarity=0.466 Sum_probs=76.6
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVE 622 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~ 622 (1044)
.++..+||+|||+..+++..|.++|.+ .|+|..+++.+|+.+. ..+|||||+|.++|+|+-|++- +...+-||+|+
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iq-agpVv~i~iPkDrv~~--~~qGygF~Ef~~eedadYAikiln~VkLYgrpIr 82 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQ-AGPVVNLHIPKDRVTQ--KHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIR 82 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHh-cCceeeeecchhhhcc--cccceeEEEEechhhhHHHHHHHHHHHhcCceeE
Confidence 456789999999999999999999998 9999999999999887 7999999999999999999999 99999999999
Q ss_pred EcccC
Q 001613 623 IKSAV 627 (1044)
Q Consensus 623 v~~A~ 627 (1044)
|..|.
T Consensus 83 v~kas 87 (203)
T KOG0131|consen 83 VNKAS 87 (203)
T ss_pred EEecc
Confidence 99986
No 130
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.64 E-value=2.2e-08 Score=115.87 Aligned_cols=80 Identities=25% Similarity=0.481 Sum_probs=76.1
Q ss_pred cceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEccc
Q 001613 548 SKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIKSA 626 (1044)
Q Consensus 548 ~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~~A 626 (1044)
..||||++|+++++++|.+.|++ .|.|.+++++.|++++ ++|||||++|.+.+++..|++. ++.++.||+++|.++
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~-~g~v~s~~~v~D~~tG--~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSG-VGPVLSFRLVYDRETG--KPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhc-cCccceeeecccccCC--CcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecc
Confidence 78999999999999999999998 9999999999999887 8999999999999999999999 999999999999998
Q ss_pred CChh
Q 001613 627 VPKE 630 (1044)
Q Consensus 627 ~~k~ 630 (1044)
....
T Consensus 96 ~~~~ 99 (435)
T KOG0108|consen 96 SNRK 99 (435)
T ss_pred cccc
Confidence 6543
No 131
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.63 E-value=2e-08 Score=120.60 Aligned_cols=74 Identities=23% Similarity=0.391 Sum_probs=68.7
Q ss_pred cccceeccCCcccccCCCCCCccccCC--CCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q 001613 546 FKSKIFVGGLPFFLDSDSLGGYFEKHF--GPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVE 622 (1044)
Q Consensus 546 ~~~kifVg~L~~~~te~~Lr~~F~~~f--G~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~ 622 (1044)
..++|||+||++++++++|+++|++ | |+|+++.+ .+|||||+|++.++|++|++. ++.+|+|+.|+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~-f~~G~I~rV~~----------~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~ 300 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSE-FKPGKVERVKK----------IRDYAFVHFEDREDAVKAMDELNGKELEGSEIE 300 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHh-cCCCceEEEEe----------ecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence 4578999999999999999999998 9 99999876 467999999999999999998 99999999999
Q ss_pred EcccCChh
Q 001613 623 IKSAVPKE 630 (1044)
Q Consensus 623 v~~A~~k~ 630 (1044)
|++|.|+.
T Consensus 301 V~~Akp~~ 308 (578)
T TIGR01648 301 VTLAKPVD 308 (578)
T ss_pred EEEccCCC
Confidence 99998865
No 132
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.60 E-value=3.3e-08 Score=107.97 Aligned_cols=79 Identities=33% Similarity=0.653 Sum_probs=73.9
Q ss_pred ccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEcc
Q 001613 547 KSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIKS 625 (1044)
Q Consensus 547 ~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~~ 625 (1044)
..+||||||+..+++++|+++|.+ ||.|..+.+..++.+ |++||||||+|.++++|..|++. ++..+.|+++.|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~-~g~~~~~~~~~d~~~--~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKK-FGPVKRVRLVRDRET--GKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHh-cCceeEEEeeecccc--CccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeec
Confidence 589999999999999999999998 999999999988844 48999999999999999999999 88999999999999
Q ss_pred cCC
Q 001613 626 AVP 628 (1044)
Q Consensus 626 A~~ 628 (1044)
+.+
T Consensus 192 ~~~ 194 (306)
T COG0724 192 AQP 194 (306)
T ss_pred ccc
Confidence 754
No 133
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.59 E-value=2.4e-08 Score=108.03 Aligned_cols=77 Identities=22% Similarity=0.482 Sum_probs=72.6
Q ss_pred cccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEc
Q 001613 546 FKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIK 624 (1044)
Q Consensus 546 ~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~ 624 (1044)
...+||||.++++..|+.+|..|.. ||+|+++.+-+|+.|+ ++|||+||+|+-+|.|.-|++. |+..++||.|+|.
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~P-FGPIKSInMSWDp~T~--kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDP-FGPIKSINMSWDPATG--KHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccC-CCCcceeecccccccc--cccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 3578999999999999999999999 9999999998888776 8999999999999999999999 9999999999997
Q ss_pred c
Q 001613 625 S 625 (1044)
Q Consensus 625 ~ 625 (1044)
+
T Consensus 189 r 189 (544)
T KOG0124|consen 189 R 189 (544)
T ss_pred C
Confidence 5
No 134
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.58 E-value=2.7e-08 Score=117.48 Aligned_cols=83 Identities=24% Similarity=0.325 Sum_probs=79.7
Q ss_pred eeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCC-CCCcHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHH
Q 001613 358 VSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTI-MMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPI 436 (1044)
Q Consensus 358 vn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~-~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~~G~TpL 436 (1044)
.|++|..|+|+||+|+..+..+++++||++|.+ ++.+|. .|+||||.|+.+|+++++-+||.+|+...++|++|.+||
T Consensus 45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGid-v~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglspl 123 (1267)
T KOG0783|consen 45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGID-VFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPL 123 (1267)
T ss_pred hhHHHhhccceeeeeeccchhHHHHHHHhcCce-eeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHH
Confidence 678999999999999999999999999999999 999995 699999999999999999999999999999999999999
Q ss_pred HHHHH
Q 001613 437 DFAKS 441 (1044)
Q Consensus 437 h~Aa~ 441 (1044)
+.-++
T Consensus 124 q~~~r 128 (1267)
T KOG0783|consen 124 QFLSR 128 (1267)
T ss_pred HHHhh
Confidence 99887
No 135
>PF13606 Ank_3: Ankyrin repeat
Probab=98.56 E-value=6.7e-08 Score=69.78 Aligned_cols=30 Identities=37% Similarity=0.473 Sum_probs=28.1
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCCCc
Q 001613 94 SGMTALHLAAESHTARCVELLLKKRARTDI 123 (1044)
Q Consensus 94 ~G~TpLH~Aa~~G~~eiVklLL~~GAdvn~ 123 (1044)
+|+||||+||..|+.++|++||++|+|+|.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 589999999999999999999999999974
No 136
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.54 E-value=6.4e-08 Score=114.37 Aligned_cols=95 Identities=28% Similarity=0.332 Sum_probs=81.4
Q ss_pred HHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCC-CCCcHHHHHHHcCCHHHHH
Q 001613 304 IEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNK-LGLTALHIAAGSGNSQALE 382 (1044)
Q Consensus 304 Vk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~-~G~TpLh~Aa~~g~~eiVk 382 (1044)
++-+++..+-+. .|.+|..|+|+||+|+..+ ...++++||++|+|++.+|. .|+||||-|..+|+++++-
T Consensus 33 lk~F~~k~c~n~-anikD~~GR~alH~~~S~~--------k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~ 103 (1267)
T KOG0783|consen 33 LKGFSEKSCQNL-ANIKDRYGRTALHIAVSEN--------KNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCAS 103 (1267)
T ss_pred HHHHHHHhhhhh-hhHHHhhccceeeeeeccc--------hhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHH
Confidence 344444323333 3788999999999999998 89999999999999999985 7999999999999999999
Q ss_pred HHHhcCCCCcccCCCCCCcHHHHHHH
Q 001613 383 DLIRKEPDCINLKTIMMETPLFFAVK 408 (1044)
Q Consensus 383 lLL~~gad~in~~d~~G~TpLh~Aa~ 408 (1044)
+||.+|.. +.++|++|..||.+-++
T Consensus 104 lLL~~g~S-L~i~Dkeglsplq~~~r 128 (1267)
T KOG0783|consen 104 LLLSKGRS-LRIKDKEGLSPLQFLSR 128 (1267)
T ss_pred HHHhcCCc-eEEecccCCCHHHHHhh
Confidence 99999998 99999999999998776
No 137
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.54 E-value=2.2e-08 Score=104.63 Aligned_cols=83 Identities=31% Similarity=0.381 Sum_probs=78.3
Q ss_pred ccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q 001613 545 EFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEI 623 (1044)
Q Consensus 545 ~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v 623 (1044)
....+|||-.||.+..+.+|..+|.. ||.|.+.+|..||.|+ +||+||||.|++..++++||.+ ||..|+-|+++|
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~P-FGhivSaKVFvDRATN--QSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLP-FGHIVSAKVFVDRATN--QSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhcc-ccceeeeeeeehhccc--cccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 34679999999999999999999999 9999999999999998 8999999999999999999999 999999999999
Q ss_pred cccCChh
Q 001613 624 KSAVPKE 630 (1044)
Q Consensus 624 ~~A~~k~ 630 (1044)
+.-+||.
T Consensus 360 QLKRPkd 366 (371)
T KOG0146|consen 360 QLKRPKD 366 (371)
T ss_pred hhcCccc
Confidence 9887775
No 138
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.51 E-value=6.7e-08 Score=109.95 Aligned_cols=80 Identities=30% Similarity=0.528 Sum_probs=75.0
Q ss_pred cceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEccc
Q 001613 548 SKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIKSA 626 (1044)
Q Consensus 548 ~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~~A 626 (1044)
.+|||++||++++.++|.++|+. +|+|..+.++.++.+. .+||||||+|+=.+++++|+.. .+..++||.+.|+.|
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~-vGPik~~~vVt~~gs~--~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A 82 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSY-VGPIKHAVVVTNKGSS--EKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPA 82 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhc-ccCcceeEEecCCCcc--cccCccceeeehHhHHHHHHHHhhcCcccceecccccc
Confidence 78999999999999999999997 9999999998776655 8999999999999999999999 999999999999999
Q ss_pred CChh
Q 001613 627 VPKE 630 (1044)
Q Consensus 627 ~~k~ 630 (1044)
.+|.
T Consensus 83 ~~R~ 86 (678)
T KOG0127|consen 83 KKRA 86 (678)
T ss_pred cccc
Confidence 8775
No 139
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.51 E-value=1.2e-07 Score=81.72 Aligned_cols=73 Identities=32% Similarity=0.566 Sum_probs=66.8
Q ss_pred ceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEcc
Q 001613 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIKS 625 (1044)
Q Consensus 549 kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~~ 625 (1044)
+|+++|||..+++++++++|.+ ||.|..+.+..++.+ +++|+|||+|.+.++|..|++. ++..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~-~g~i~~~~~~~~~~~---~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSK-FGKVESVRIVRDKDT---KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHh-cCCEEEEEEeeCCCC---CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999998 999999999877665 4899999999999999999999 88889999998863
No 140
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.48 E-value=9.5e-08 Score=114.77 Aligned_cols=75 Identities=23% Similarity=0.270 Sum_probs=68.4
Q ss_pred ccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh---CCCccCCeEEEE
Q 001613 547 KSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA---RFVTIMGKEVEI 623 (1044)
Q Consensus 547 ~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~---~~~~i~Gr~i~v 623 (1044)
.+.|||+|||+++++++|+++|++ ||.|.++.+++ +||||||+|.+.++|.+|++. ++..++|++|.|
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~-fG~V~~v~i~~--------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v 72 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIP-FGPVSYVMMLP--------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFF 72 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHh-cCCeeEEEEEC--------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEE
Confidence 468999999999999999999998 99999999873 579999999999999999984 678999999999
Q ss_pred cccCChh
Q 001613 624 KSAVPKE 630 (1044)
Q Consensus 624 ~~A~~k~ 630 (1044)
.++.+++
T Consensus 73 ~~s~~~~ 79 (481)
T TIGR01649 73 NYSTSQE 79 (481)
T ss_pred EecCCcc
Confidence 9997654
No 141
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.47 E-value=1.9e-07 Score=69.06 Aligned_cols=33 Identities=39% Similarity=0.501 Sum_probs=30.7
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCCCcccC
Q 001613 94 SGMTALHLAAESHTARCVELLLKKRARTDIRSK 126 (1044)
Q Consensus 94 ~G~TpLH~Aa~~G~~eiVklLL~~GAdvn~~d~ 126 (1044)
+|.||||+||..|+.++|++||++|++++.+|+
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 589999999999999999999999999998874
No 142
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.43 E-value=1.8e-07 Score=105.03 Aligned_cols=92 Identities=21% Similarity=0.105 Sum_probs=70.4
Q ss_pred CCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCc
Q 001613 322 ADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMET 401 (1044)
Q Consensus 322 ~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~T 401 (1044)
.++..++++|++.| .+..++.+.-.|.|++.+|.+.+|+||.||..|+++++++||+....+++.+|..|+|
T Consensus 504 ~~~~i~~~~aa~~G--------D~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rt 575 (622)
T KOG0506|consen 504 NDTVINVMYAAKNG--------DLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRT 575 (622)
T ss_pred ccchhhhhhhhhcC--------CHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCC
Confidence 45566777777777 7777777777777887788778888888888888888888877766667777888888
Q ss_pred HHHHHHHcCCHHHHHHHHHC
Q 001613 402 PLFFAVKNDHMVCAEVLLRW 421 (1044)
Q Consensus 402 pLh~Aa~~g~~~iVklLL~~ 421 (1044)
||.-|...+|.+++++|-+.
T Consensus 576 PlDdA~~F~h~~v~k~L~~~ 595 (622)
T KOG0506|consen 576 PLDDAKHFKHKEVVKLLEEA 595 (622)
T ss_pred cchHhHhcCcHHHHHHHHHH
Confidence 88888888888888777764
No 143
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.42 E-value=1.8e-07 Score=112.50 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=70.3
Q ss_pred ccccceeccCCcc-cccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q 001613 545 EFKSKIFVGGLPF-FLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVE 622 (1044)
Q Consensus 545 ~~~~kifVg~L~~-~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~ 622 (1044)
....+|||+||++ .+++++|+++|++ ||.|.+++++++ .+|||||+|.+.++|.+|+.. ++..|.|++|+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~-yG~V~~vki~~~-------~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~ 344 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCV-YGNVERVKFMKN-------KKETALIEMADPYQAQLALTHLNGVKLFGKPLR 344 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHh-cCCeEEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhCCCEECCceEE
Confidence 3567999999998 6999999999998 999999999875 479999999999999999998 99999999999
Q ss_pred EcccCCh
Q 001613 623 IKSAVPK 629 (1044)
Q Consensus 623 v~~A~~k 629 (1044)
|.++..+
T Consensus 345 v~~s~~~ 351 (481)
T TIGR01649 345 VCPSKQQ 351 (481)
T ss_pred EEEcccc
Confidence 9987543
No 144
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.41 E-value=1.1e-07 Score=106.38 Aligned_cols=76 Identities=22% Similarity=0.381 Sum_probs=70.6
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVE 622 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~ 622 (1044)
..+++-|||.||+.++|++.|++.|.+ ||.|+.|+.+ |-||||.|.+.++|.+|++. |+.+|+|..|+
T Consensus 256 ms~VKvLYVRNL~~~tTeE~lk~~F~~-~G~veRVkk~----------rDYaFVHf~eR~davkAm~~~ngkeldG~~iE 324 (506)
T KOG0117|consen 256 MSKVKVLYVRNLMESTTEETLKKLFNE-FGKVERVKKP----------RDYAFVHFAEREDAVKAMKETNGKELDGSPIE 324 (506)
T ss_pred hhheeeeeeeccchhhhHHHHHHHHHh-ccceEEeecc----------cceeEEeecchHHHHHHHHHhcCceecCceEE
Confidence 457888999999999999999999998 9999998875 45999999999999999999 99999999999
Q ss_pred EcccCChh
Q 001613 623 IKSAVPKE 630 (1044)
Q Consensus 623 v~~A~~k~ 630 (1044)
|..|+|..
T Consensus 325 vtLAKP~~ 332 (506)
T KOG0117|consen 325 VTLAKPVD 332 (506)
T ss_pred EEecCChh
Confidence 99999865
No 145
>PF13606 Ank_3: Ankyrin repeat
Probab=98.41 E-value=2.9e-07 Score=66.50 Aligned_cols=30 Identities=30% Similarity=0.417 Sum_probs=24.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCCccc
Q 001613 398 MMETPLFFAVKNDHMVCAEVLLRWGANSEV 427 (1044)
Q Consensus 398 ~G~TpLh~Aa~~g~~~iVklLL~~GAdin~ 427 (1044)
+|+||||+|+.+|+.++|++||++|+|+|.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 478888888888888888888888888763
No 146
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.41 E-value=2.9e-07 Score=76.70 Aligned_cols=55 Identities=27% Similarity=0.482 Sum_probs=47.5
Q ss_pred CCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEccc
Q 001613 564 LGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIKSA 626 (1044)
Q Consensus 564 Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~~A 626 (1044)
|+++|++ ||+|.++.+... .+|++||+|.+.++|.+|++. ++..++|++|+|++|
T Consensus 1 L~~~f~~-fG~V~~i~~~~~-------~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSK-FGEVKKIKIFKK-------KRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTT-TS-EEEEEEETT-------STTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCC-cccEEEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 3567898 999999999543 169999999999999999998 999999999999875
No 147
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.39 E-value=8.3e-07 Score=101.01 Aligned_cols=107 Identities=18% Similarity=0.145 Sum_probs=93.7
Q ss_pred hHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-cccCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q 001613 344 QNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDC-INLKTIMMETPLFFAVKNDHMVCAEVLLRWG 422 (1044)
Q Consensus 344 ~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~-in~~d~~G~TpLh~Aa~~g~~~iVklLL~~G 422 (1044)
++--++.+..+|-++-.++.+..|.||+|+..|+-++|++||++++.. +++.|..|.|+||.|+..++..+.++|++.|
T Consensus 878 D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdag 957 (1004)
T KOG0782|consen 878 DLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAG 957 (1004)
T ss_pred cHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcc
Confidence 333344455678888899999999999999999999999999998763 6788899999999999999999999999999
Q ss_pred CCcccccCCCCcHHHHHHHcChHHHHHH
Q 001613 423 ANSEVLNLRRERPIDFAKSQDMRFLLKA 450 (1044)
Q Consensus 423 Adin~~d~~G~TpLh~Aa~~g~~~Ll~~ 450 (1044)
|..-..|..|.||-.-|-+.|..+|...
T Consensus 958 asl~ktd~kg~tp~eraqqa~d~dlaay 985 (1004)
T KOG0782|consen 958 ASLRKTDSKGKTPQERAQQAGDPDLAAY 985 (1004)
T ss_pred hhheecccCCCChHHHHHhcCCchHHHH
Confidence 9999999999999999998887666553
No 148
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.38 E-value=4.2e-07 Score=67.15 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=27.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCCcccccC
Q 001613 398 MMETPLFFAVKNDHMVCAEVLLRWGANSEVLNL 430 (1044)
Q Consensus 398 ~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~ 430 (1044)
+|+||||+|+.+|+.+++++||++||+++.+|+
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 478888888888888888888888888888764
No 149
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.37 E-value=1.5e-07 Score=89.25 Aligned_cols=80 Identities=21% Similarity=0.342 Sum_probs=74.0
Q ss_pred ccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEcc
Q 001613 547 KSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIKS 625 (1044)
Q Consensus 547 ~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~~ 625 (1044)
.+-|||-++-.+.+++++.+.|.. ||+|+.+.+-.|+.++ -.|||+.|+|++.+.|++|+.+ |+..+.|.+|.|+|
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~d-yGeiKNihLNLDRRtG--y~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFAD-YGEIKNIHLNLDRRTG--YVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhh-cccccceeeccccccc--cccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 467999999999999999999997 9999999998887665 8999999999999999999999 99999999999999
Q ss_pred cCCh
Q 001613 626 AVPK 629 (1044)
Q Consensus 626 A~~k 629 (1044)
+-.+
T Consensus 149 ~Fv~ 152 (170)
T KOG0130|consen 149 CFVK 152 (170)
T ss_pred EEec
Confidence 8643
No 150
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.37 E-value=2.8e-07 Score=91.86 Aligned_cols=77 Identities=21% Similarity=0.337 Sum_probs=68.7
Q ss_pred cccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEc
Q 001613 546 FKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIK 624 (1044)
Q Consensus 546 ~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~ 624 (1044)
..++|||||||.++.+.++.++|.+ ||.|.++.+- ... ..-+|+||+|++..+|+.|+.. ++..++|-+++|.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyK-yg~i~~ieLK---~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVE 78 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYK-YGRIREIELK---NRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVE 78 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhh-hcceEEEEec---cCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEE
Confidence 4578999999999999999999998 9999999882 111 3578999999999999999999 9999999999999
Q ss_pred ccCC
Q 001613 625 SAVP 628 (1044)
Q Consensus 625 ~A~~ 628 (1044)
++..
T Consensus 79 fprg 82 (241)
T KOG0105|consen 79 FPRG 82 (241)
T ss_pred eccC
Confidence 9864
No 151
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.36 E-value=3.6e-07 Score=95.68 Aligned_cols=94 Identities=31% Similarity=0.390 Sum_probs=81.0
Q ss_pred cccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CC-CccCC--eEE
Q 001613 546 FKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RF-VTIMG--KEV 621 (1044)
Q Consensus 546 ~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~-~~i~G--r~i 621 (1044)
..+|+|||-|...-.|+++|.+|.. ||+|++|.+++..++. +||++||.|.+..+|..||.. ++ ..+-| ..+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~p-fG~~~e~tvlrg~dg~---sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSL 93 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQP-FGNIEECTVLRGPDGN---SKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSL 93 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcc-cCCcceeEEecCCCCC---CCCceEEEeccchHHHHHHHHhcccccCCCCccce
Confidence 5689999999999999999999998 9999999999888776 999999999999999999999 66 56666 468
Q ss_pred EEccc-CChhHHHHHHHHHHHhh
Q 001613 622 EIKSA-VPKEVLFAELQKQSAQQ 643 (1044)
Q Consensus 622 ~v~~A-~~k~~~~~~~~~~~~~~ 643 (1044)
.|++| ..|+...++||+.-++-
T Consensus 94 VVK~ADTdkER~lRRMQQma~ql 116 (371)
T KOG0146|consen 94 VVKFADTDKERTLRRMQQMAGQL 116 (371)
T ss_pred EEEeccchHHHHHHHHHHHHHHh
Confidence 89988 45776677777765543
No 152
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.34 E-value=3.4e-07 Score=99.67 Aligned_cols=78 Identities=26% Similarity=0.417 Sum_probs=71.6
Q ss_pred ccccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh--CCCccCCeE
Q 001613 543 TQEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA--RFVTIMGKE 620 (1044)
Q Consensus 543 a~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~--~~~~i~Gr~ 620 (1044)
++...++||||+|...+++.+++++|.+ ||+|+.++++ ..+|+|||+|.+.++|+.|.+. +...|+|++
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyq-yGeirsi~~~--------~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQ-YGEIRSIRIL--------PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhh-cCCeeeEEee--------cccccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 3667789999999999999999999998 9999999996 3578999999999999999998 778899999
Q ss_pred EEEcccCCh
Q 001613 621 VEIKSAVPK 629 (1044)
Q Consensus 621 i~v~~A~~k 629 (1044)
|.|.|..++
T Consensus 295 l~i~Wg~~~ 303 (377)
T KOG0153|consen 295 LKIKWGRPK 303 (377)
T ss_pred EEEEeCCCc
Confidence 999999884
No 153
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.33 E-value=4.3e-07 Score=102.08 Aligned_cols=94 Identities=19% Similarity=0.237 Sum_probs=86.5
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHh-cCCeeeecCC
Q 001613 285 DKKVGPPLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLK-HGAIVSQQNK 363 (1044)
Q Consensus 285 d~~G~TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe-~GAdvn~~d~ 363 (1044)
+.++...+++|+..|++..++.+.-. |.|+ +.+|.+.+|+||.||..| +++++++|++ .+.+++.+|.
T Consensus 503 ~~~~~i~~~~aa~~GD~~alrRf~l~-g~D~--~~~DyD~RTaLHvAAaEG--------~v~v~kfl~~~~kv~~~~kDR 571 (622)
T KOG0506|consen 503 ENDTVINVMYAAKNGDLSALRRFALQ-GMDL--ETKDYDDRTALHVAAAEG--------HVEVVKFLLNACKVDPDPKDR 571 (622)
T ss_pred cccchhhhhhhhhcCCHHHHHHHHHh-cccc--cccccccchhheeecccC--------ceeHHHHHHHHHcCCCChhhc
Confidence 44667789999999999999988888 9999 999999999999999999 9999999997 5899999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCC
Q 001613 364 LGLTALHIAAGSGNSQALEDLIRKEP 389 (1044)
Q Consensus 364 ~G~TpLh~Aa~~g~~eiVklLL~~ga 389 (1044)
.|+|||.-|-..+|.+++++|-+...
T Consensus 572 w~rtPlDdA~~F~h~~v~k~L~~~~~ 597 (622)
T KOG0506|consen 572 WGRTPLDDAKHFKHKEVVKLLEEAQY 597 (622)
T ss_pred cCCCcchHhHhcCcHHHHHHHHHHhc
Confidence 99999999999999999999977644
No 154
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.31 E-value=2e-07 Score=98.99 Aligned_cols=71 Identities=24% Similarity=0.540 Sum_probs=67.3
Q ss_pred cceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEccc
Q 001613 548 SKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIKSA 626 (1044)
Q Consensus 548 ~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~~A 626 (1044)
.|+||||||..+++.+||.+|++ ||+|.+|.|+ |-||||..++...+..|+.. ++..|+|..|.|+.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~-ygkVlECDIv----------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaS 71 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQ-YGKVLECDIV----------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEAS 71 (346)
T ss_pred cchhccCCCcccchHHHHHHHHh-hCceEeeeee----------cccceEEeecccccHHHHhhcccceecceEEEEEec
Confidence 58999999999999999999998 9999999996 45999999999999999998 999999999999998
Q ss_pred CCh
Q 001613 627 VPK 629 (1044)
Q Consensus 627 ~~k 629 (1044)
++|
T Consensus 72 ksK 74 (346)
T KOG0109|consen 72 KSK 74 (346)
T ss_pred ccc
Confidence 877
No 155
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.30 E-value=1.7e-06 Score=97.66 Aligned_cols=86 Identities=28% Similarity=0.243 Sum_probs=77.7
Q ss_pred HHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecC-CCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHH
Q 001613 327 ALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQN-KLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFF 405 (1044)
Q Consensus 327 pLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d-~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~ 405 (1044)
-||..++.| +.++.-.||..||++|..+ ..|.||||.|+..|+..-+++|+-+|+| +++.|..|+||+.+
T Consensus 136 QLhasvRt~--------nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-~~a~d~~GmtP~~~ 206 (669)
T KOG0818|consen 136 QLHSSVRTG--------NLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD-PGAQDSSGMTPVDY 206 (669)
T ss_pred HHHHHhhcc--------cHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC-CCCCCCCCCcHHHH
Confidence 488889888 8999999999999999876 5699999999999999999999999999 99999999999999
Q ss_pred HHHcCCHHHHHHHHHC
Q 001613 406 AVKNDHMVCAEVLLRW 421 (1044)
Q Consensus 406 Aa~~g~~~iVklLL~~ 421 (1044)
|-..||-++.+.|++.
T Consensus 207 AR~~gH~~laeRl~e~ 222 (669)
T KOG0818|consen 207 ARQGGHHELAERLVEI 222 (669)
T ss_pred HHhcCchHHHHHHHHH
Confidence 9999999888888763
No 156
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.29 E-value=1.7e-06 Score=104.41 Aligned_cols=126 Identities=23% Similarity=0.235 Sum_probs=104.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCC
Q 001613 287 KVGPPLILATQAGDEDVIEILLKSKNI-DINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLG 365 (1044)
Q Consensus 287 ~G~TpLh~Aa~~G~~eiVk~LL~~~ga-dvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G 365 (1044)
.+.--...|++.|+...|+..++.... .+|+|..|.-|+++|++|..+- +.+++++|++++..+
T Consensus 24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~ne--------nle~~eLLl~~~~~~------- 88 (822)
T KOG3609|consen 24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNE--------NLELQELLLDTSSEE------- 88 (822)
T ss_pred hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccc--------cHHHHHHHhcCcccc-------
Confidence 344567889999999999999986322 3667999999999999999988 999999999987665
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCC---------cccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc
Q 001613 366 LTALHIAAGSGNSQALEDLIRKEPDC---------INLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEV 427 (1044)
Q Consensus 366 ~TpLh~Aa~~g~~eiVklLL~~gad~---------in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~ 427 (1044)
..+|.+|+..|..++|++|+.+.... -...-..+.|||++||..++++|+++||++|+.+..
T Consensus 89 gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~ 159 (822)
T KOG3609|consen 89 GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI 159 (822)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence 35899999999999999999885541 112334678999999999999999999999998743
No 157
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.29 E-value=5.6e-07 Score=95.71 Aligned_cols=75 Identities=21% Similarity=0.474 Sum_probs=70.1
Q ss_pred ccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q 001613 545 EFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEI 623 (1044)
Q Consensus 545 ~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v 623 (1044)
....||+|||+.+..+.+++|+.|++ ||+|.++.++ |+|+||.|+-.++|..|+.. ++.+++|+++.|
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~-ygpviecdiv----------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~v 144 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEK-YGPVIECDIV----------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHV 144 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcc-cCCceeeeee----------cceeEEEEeeccchHHHHhcccccccccceeee
Confidence 35679999999999999999999998 9999999994 67999999999999999999 999999999999
Q ss_pred cccCChh
Q 001613 624 KSAVPKE 630 (1044)
Q Consensus 624 ~~A~~k~ 630 (1044)
+.+.+|-
T Consensus 145 q~stsrl 151 (346)
T KOG0109|consen 145 QLSTSRL 151 (346)
T ss_pred eeecccc
Confidence 9998764
No 158
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.28 E-value=5.7e-07 Score=103.42 Aligned_cols=78 Identities=29% Similarity=0.599 Sum_probs=71.3
Q ss_pred ceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEcccC
Q 001613 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIKSAV 627 (1044)
Q Consensus 549 kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~~A~ 627 (1044)
++|||||-+.++++.++..|+. ||.|+.+.+++|..++ ++|||||++|...++|.+|++. ||.+|-||.|+|..-.
T Consensus 280 rl~vgnLHfNite~~lr~ifep-fg~Ie~v~l~~d~~tG--~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEP-FGKIENVQLTKDSETG--RSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred hhhhcccccCchHHHHhhhccC-cccceeeeeccccccc--cccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 3999999999999999999999 9999999998876555 8999999999999999999999 9999999999987654
Q ss_pred Ch
Q 001613 628 PK 629 (1044)
Q Consensus 628 ~k 629 (1044)
.+
T Consensus 357 ~r 358 (549)
T KOG0147|consen 357 ER 358 (549)
T ss_pred ee
Confidence 43
No 159
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.27 E-value=2.4e-06 Score=97.42 Aligned_cols=118 Identities=24% Similarity=0.174 Sum_probs=101.1
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCe--eeecCCCCCcHH
Q 001613 292 LILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAI--VSQQNKLGLTAL 369 (1044)
Q Consensus 292 Lh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAd--vn~~d~~G~TpL 369 (1044)
|..|+..+++--+.-+... |-++ -.++.+..|.||+|++.| +-+||++||+||.. ++..|..|.|+|
T Consensus 870 il~av~~~D~~klqE~h~~-gg~l--l~~~~~~~sllh~a~~tg--------~~eivkyildh~p~elld~~de~get~l 938 (1004)
T KOG0782|consen 870 ILRAVLSSDLMKLQETHLN-GGSL--LIQGPDHCSLLHYAAKTG--------NGEIVKYILDHGPSELLDMADETGETAL 938 (1004)
T ss_pred HHHHHHhccHHHHHHHHhc-CCce--EeeCcchhhHHHHHHhcC--------ChHHHHHHHhcCCHHHHHHHhhhhhHHH
Confidence 4556666665544444455 6677 678888999999999999 89999999999875 577889999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q 001613 370 HIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRW 421 (1044)
Q Consensus 370 h~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~ 421 (1044)
|-|+..++..+.++|++.|+. +-..|..|.||-..|-+.|..+++.||-..
T Consensus 939 hkaa~~~~r~vc~~lvdagas-l~ktd~kg~tp~eraqqa~d~dlaayle~r 989 (1004)
T KOG0782|consen 939 HKAACQRNRAVCQLLVDAGAS-LRKTDSKGKTPQERAQQAGDPDLAAYLESR 989 (1004)
T ss_pred HHHHHhcchHHHHHHHhcchh-heecccCCCChHHHHHhcCCchHHHHHhhh
Confidence 999999999999999999999 889999999999999999999999998653
No 160
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.26 E-value=1.8e-06 Score=88.39 Aligned_cols=91 Identities=23% Similarity=0.412 Sum_probs=74.5
Q ss_pred ccceeccCCcccccCCCCCCccccCC-CCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEc
Q 001613 547 KSKIFVGGLPFFLDSDSLGGYFEKHF-GPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIK 624 (1044)
Q Consensus 547 ~~kifVg~L~~~~te~~Lr~~F~~~f-G~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~ 624 (1044)
..-++++.++....+..+..+|.+ | |.|..+++-+.+ .||.|||||||+|++++.|.-|.+. |+.-+.|+.+.|.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q-~~g~v~r~rlsRnk--rTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQ-FGGTVTRFRLSRNK--RTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred ccceeecccccchhHHHHhhhhhh-cCCeeEEEEeeccc--ccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 445789999999999999999998 6 788877774554 5558999999999999999999999 9999999999998
Q ss_pred ccCChhHHHHHHHHHH
Q 001613 625 SAVPKEVLFAELQKQS 640 (1044)
Q Consensus 625 ~A~~k~~~~~~~~~~~ 640 (1044)
.--|.+.....+.+..
T Consensus 126 vmppe~~v~~~~~k~~ 141 (214)
T KOG4208|consen 126 VMPPEQKVEKNLKKVS 141 (214)
T ss_pred EeCchhhhhhhhhhhc
Confidence 8766544555544443
No 161
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.25 E-value=2.5e-06 Score=96.34 Aligned_cols=89 Identities=25% Similarity=0.324 Sum_probs=79.3
Q ss_pred ecCCCCCcH------HHHHHHcCCHHHHHHHHhcCCCCcccCC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccCCC
Q 001613 360 QQNKLGLTA------LHIAAGSGNSQALEDLIRKEPDCINLKT-IMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRR 432 (1044)
Q Consensus 360 ~~d~~G~Tp------Lh~Aa~~g~~eiVklLL~~gad~in~~d-~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~~G 432 (1044)
.+|.+|-|. ||..+..|+.++.-.||..|++ +|..+ ..|.||||+|++.|+.--+++|+-+|||+++.|..|
T Consensus 122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~-~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~G 200 (669)
T KOG0818|consen 122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQ-ANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSG 200 (669)
T ss_pred CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccc-cCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCC
Confidence 355555543 8899999999999999999999 99887 469999999999999999999999999999999999
Q ss_pred CcHHHHHHHcChHHHHH
Q 001613 433 ERPIDFAKSQDMRFLLK 449 (1044)
Q Consensus 433 ~TpLh~Aa~~g~~~Ll~ 449 (1044)
+||+.||-..|+-+|..
T Consensus 201 mtP~~~AR~~gH~~lae 217 (669)
T KOG0818|consen 201 MTPVDYARQGGHHELAE 217 (669)
T ss_pred CcHHHHHHhcCchHHHH
Confidence 99999999999766655
No 162
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.23 E-value=2.5e-06 Score=98.11 Aligned_cols=81 Identities=31% Similarity=0.389 Sum_probs=67.9
Q ss_pred hHHHHHHHHhcCCeee----ecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 001613 344 QNRIVGILLKHGAIVS----QQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLL 419 (1044)
Q Consensus 344 ~~~iVklLLe~GAdvn----~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL 419 (1044)
++..+-+||.||.... ..+.+|.|+||+||..|++.+.++|+-+|+| +-++|..|+|+|.||-+.|..+|+.+|+
T Consensus 636 Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d-v~~rda~g~t~l~yar~a~sqec~d~ll 714 (749)
T KOG0705|consen 636 DLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD-VMARDAHGRTALFYARQAGSQECIDVLL 714 (749)
T ss_pred HHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc-ceecccCCchhhhhHhhcccHHHHHHHH
Confidence 7778888888886532 2446778999999999999999999999988 8899999999999999999999999999
Q ss_pred HCCCCc
Q 001613 420 RWGANS 425 (1044)
Q Consensus 420 ~~GAdi 425 (1044)
++|+-.
T Consensus 715 q~gcp~ 720 (749)
T KOG0705|consen 715 QYGCPD 720 (749)
T ss_pred HcCCCc
Confidence 988654
No 163
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=1.4e-06 Score=100.14 Aligned_cols=78 Identities=31% Similarity=0.422 Sum_probs=73.4
Q ss_pred eeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEcccCC
Q 001613 550 IFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIKSAVP 628 (1044)
Q Consensus 550 ifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~~A~~ 628 (1044)
|||-||+.+++...|.+.|+. ||+|.+|+|+.+.++ ++|| ||.|+++++|.+|++. ||..+.|++|.|..+..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~-~g~ilS~kv~~~~~g----~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSE-FGNILSCKVATDENG----SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred eeecCCCcccCcHHHHHHHHh-hcCeeEEEEEEcCCC----ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 999999999999999999998 999999999998766 8999 9999999999999999 99999999999999988
Q ss_pred hhHHH
Q 001613 629 KEVLF 633 (1044)
Q Consensus 629 k~~~~ 633 (1044)
++...
T Consensus 153 ~~er~ 157 (369)
T KOG0123|consen 153 KEERE 157 (369)
T ss_pred hhhhc
Confidence 77443
No 164
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.16 E-value=3.4e-06 Score=96.88 Aligned_cols=90 Identities=31% Similarity=0.427 Sum_probs=68.5
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHH
Q 001613 290 PPLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTAL 369 (1044)
Q Consensus 290 TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpL 369 (1044)
-|||+++.....+-+..++.. .+...++..|..|.||||+|+.-| +...++.|+.+||++..+|+.||+||
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~-~~~~~id~~D~~g~TpLhlAV~Lg--------~~~~a~~Ll~a~Adv~~kN~~gWs~L 92 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLA-KVSLVIDRRDPPGRTPLHLAVRLG--------HVEAARILLSAGADVSIKNNEGWSPL 92 (560)
T ss_pred cccchhhhccchhhHHHHHhh-hhhceeccccCCCCccHHHHHHhc--------CHHHHHHHHhcCCCccccccccccHH
Confidence 358888887777665554444 233333778888888888888888 88888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHhcC
Q 001613 370 HIAAGSGNSQALEDLIRKE 388 (1044)
Q Consensus 370 h~Aa~~g~~eiVklLL~~g 388 (1044)
|.|+..|+.+++..+|.+-
T Consensus 93 ~EAv~~g~~q~i~~vlr~~ 111 (560)
T KOG0522|consen 93 HEAVSTGNEQIITEVLRHL 111 (560)
T ss_pred HHHHHcCCHHHHHHHHHHh
Confidence 8888888888887777654
No 165
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.10 E-value=1.9e-06 Score=95.80 Aligned_cols=79 Identities=18% Similarity=0.323 Sum_probs=72.3
Q ss_pred ccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEcc
Q 001613 547 KSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIKS 625 (1044)
Q Consensus 547 ~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~~ 625 (1044)
.+.+||-|+|++..+++|+++|....|+|+.|.++.|..+ ++||+|.|+|+++|.+++|++. +.+++.||++.|+.
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~G---K~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESG---KARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCC---CcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 3459999999999999999999876999999999999765 5999999999999999999999 99999999999987
Q ss_pred cCC
Q 001613 626 AVP 628 (1044)
Q Consensus 626 A~~ 628 (1044)
-..
T Consensus 121 d~d 123 (608)
T KOG4212|consen 121 DHD 123 (608)
T ss_pred cCc
Confidence 543
No 166
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.09 E-value=1e-06 Score=88.27 Aligned_cols=80 Identities=21% Similarity=0.384 Sum_probs=72.3
Q ss_pred cceeccCCcccccCCCCCCccccCCCCcceE-EEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEcc
Q 001613 548 SKIFVGGLPFFLDSDSLGGYFEKHFGPIEDA-RVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIKS 625 (1044)
Q Consensus 548 ~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~-~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~~ 625 (1044)
.++|+|||..++++..|.+.|+. ||.+... .+|+|.+|+ .++|||||.|++.|.+.+|+.+ ++..+..|++.|..
T Consensus 97 anlfvgNLd~~vDe~~L~dtFsa-fG~l~~~P~i~rd~~tg--~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~y 173 (203)
T KOG0131|consen 97 ANLFVGNLDPEVDEKLLYDTFSA-FGVLISPPKIMRDPDTG--NPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSY 173 (203)
T ss_pred ccccccccCcchhHHHHHHHHHh-ccccccCCcccccccCC--CCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEE
Confidence 68999999999999999999998 9988764 677777766 7999999999999999999999 99999999999999
Q ss_pred cCChh
Q 001613 626 AVPKE 630 (1044)
Q Consensus 626 A~~k~ 630 (1044)
|..+.
T Consensus 174 a~k~~ 178 (203)
T KOG0131|consen 174 AFKKD 178 (203)
T ss_pred EEecC
Confidence 87553
No 167
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.09 E-value=5e-06 Score=75.82 Aligned_cols=81 Identities=21% Similarity=0.392 Sum_probs=71.8
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVE 622 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~ 622 (1044)
++..+-|||.|||+.++.++.-+.|.+ ||.|..++|--.+ .-||-|||.|++..+|++|++. .|..++++.+.
T Consensus 15 pevnriLyirNLp~~ITseemydlFGk-yg~IrQIRiG~~k-----~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~ 88 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGK-YGTIRQIRIGNTK-----ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLV 88 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhc-ccceEEEEecCcc-----CcCceEEEEehHhhhHHHHHHHhcccccCCceEE
Confidence 556778999999999999999999998 9999999995433 3589999999999999999999 99999999999
Q ss_pred EcccCChh
Q 001613 623 IKSAVPKE 630 (1044)
Q Consensus 623 v~~A~~k~ 630 (1044)
|-.-.+-.
T Consensus 89 vlyyq~~~ 96 (124)
T KOG0114|consen 89 VLYYQPED 96 (124)
T ss_pred EEecCHHH
Confidence 98766543
No 168
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.02 E-value=1e-05 Score=92.99 Aligned_cols=64 Identities=25% Similarity=0.323 Sum_probs=33.0
Q ss_pred CeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 001613 356 AIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLR 420 (1044)
Q Consensus 356 Advn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~ 420 (1044)
..++.+|..|+||||+|+..|+.+.++.|+..+++ +..+|+.|++|||-|+..|+..++..++.
T Consensus 46 ~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad-v~~kN~~gWs~L~EAv~~g~~q~i~~vlr 109 (560)
T KOG0522|consen 46 LVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD-VSIKNNEGWSPLHEAVSTGNEQIITEVLR 109 (560)
T ss_pred ceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC-ccccccccccHHHHHHHcCCHHHHHHHHH
Confidence 34444555555555555555555555555555555 55555555555555555555544444443
No 169
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.01 E-value=1.7e-06 Score=104.99 Aligned_cols=82 Identities=13% Similarity=0.261 Sum_probs=62.7
Q ss_pred ccccccceeccCCcccccCCCCCCccccCCCCcce------EEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHhCCCcc
Q 001613 543 TQEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIED------ARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQARFVTI 616 (1044)
Q Consensus 543 a~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~------~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~~~~~i 616 (1044)
.....++|||||||+.+++++|+++|.+ |+.... ...+.+.... +.+|||||+|.+.++|..|+..++..+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~-~~~~~~~~~~~~~~~v~~~~~~--~~kg~afVeF~~~e~A~~Al~l~g~~~ 247 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFND-LMIATGYHKAEDGKHVSSVNIN--KEKNFAFLEFRTVEEATFAMALDSIIY 247 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCCCCCCCCceEEEEEC--CCCCEEEEEeCCHHHHhhhhcCCCeEe
Confidence 3567789999999999999999999986 521111 1111111112 579999999999999999997799999
Q ss_pred CCeEEEEcccC
Q 001613 617 MGKEVEIKSAV 627 (1044)
Q Consensus 617 ~Gr~i~v~~A~ 627 (1044)
.|+.|.|.+..
T Consensus 248 ~g~~l~v~r~~ 258 (509)
T TIGR01642 248 SNVFLKIRRPH 258 (509)
T ss_pred eCceeEecCcc
Confidence 99999997543
No 170
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=97.98 E-value=1.5e-05 Score=91.75 Aligned_cols=92 Identities=24% Similarity=0.300 Sum_probs=82.0
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCc
Q 001613 290 PPLILATQAGDEDVIEILLKSKNIDINDAD--ADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLT 367 (1044)
Q Consensus 290 TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~--~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~T 367 (1044)
.-|..|+...++..+-+||.+ |....+|. .+.+|+|+||+||..| ++.+.++|+=+|+|+-++|..|+|
T Consensus 626 qqLl~A~~~~Dl~t~~lLLAh-g~~~e~~~t~~~~~grt~LHLa~~~g--------nVvl~QLLiWyg~dv~~rda~g~t 696 (749)
T KOG0705|consen 626 QQLLRAVAAEDLQTAILLLAH-GSREEVNETCGEGDGRTALHLAARKG--------NVVLAQLLIWYGVDVMARDAHGRT 696 (749)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cCchhhhccccCCCCcchhhhhhhhc--------chhHHHHHHHhCccceecccCCch
Confidence 357888889999999999998 76554343 4667899999999999 999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCC
Q 001613 368 ALHIAAGSGNSQALEDLIRKEPD 390 (1044)
Q Consensus 368 pLh~Aa~~g~~eiVklLL~~gad 390 (1044)
+|.||-..|.-+++.+||.+|..
T Consensus 697 ~l~yar~a~sqec~d~llq~gcp 719 (749)
T KOG0705|consen 697 ALFYARQAGSQECIDVLLQYGCP 719 (749)
T ss_pred hhhhHhhcccHHHHHHHHHcCCC
Confidence 99999999999999999999865
No 171
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.94 E-value=3.4e-06 Score=88.45 Aligned_cols=84 Identities=25% Similarity=0.388 Sum_probs=76.2
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVE 622 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~ 622 (1044)
++.-.+||.|-|..+++++.|...|.+ |-.-...++++|+.++ +++|||||.|.+.+++.+|+.+ +|..++.|+|.
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~K-fpsf~~akviRdkRTg--KSkgygfVSf~~pad~~rAmrem~gkyVgsrpik 263 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKK-FPSFQKAKVIRDKRTG--KSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIK 263 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHh-ccchhhcccccccccc--ccccceeeeecCHHHHHHHHHhhcccccccchhH
Confidence 455679999999999999999999998 9999999998887666 8999999999999999999999 99999999999
Q ss_pred EcccCChh
Q 001613 623 IKSAVPKE 630 (1044)
Q Consensus 623 v~~A~~k~ 630 (1044)
+....-|+
T Consensus 264 lRkS~wke 271 (290)
T KOG0226|consen 264 LRKSEWKE 271 (290)
T ss_pred hhhhhHHh
Confidence 88776555
No 172
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.91 E-value=4.3e-06 Score=98.74 Aligned_cols=85 Identities=25% Similarity=0.441 Sum_probs=76.7
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVE 622 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~ 622 (1044)
.....||+|.|+|++.+-.+++..|.. ||.+.+++|+.- ++.+.+||||||+|-++.+|.+|+.+ ..+.+.||++.
T Consensus 610 kk~~tKIlVRNipFeAt~rEVr~LF~a-FGqlksvRlPKK--~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLV 686 (725)
T KOG0110|consen 610 KKKGTKILVRNIPFEATKREVRKLFTA-FGQLKSVRLPKK--IGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLV 686 (725)
T ss_pred ccccceeeeeccchHHHHHHHHHHHhc-ccceeeeccchh--hcchhhccceeeeccCcHHHHHHHHhhcccceechhhh
Confidence 344689999999999999999999998 999999999765 55567899999999999999999999 88999999999
Q ss_pred EcccCChhH
Q 001613 623 IKSAVPKEV 631 (1044)
Q Consensus 623 v~~A~~k~~ 631 (1044)
+.||..-..
T Consensus 687 LEwA~~d~~ 695 (725)
T KOG0110|consen 687 LEWAKSDNT 695 (725)
T ss_pred eehhccchH
Confidence 999987654
No 173
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=8.7e-06 Score=88.61 Aligned_cols=80 Identities=20% Similarity=0.259 Sum_probs=73.9
Q ss_pred ceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEcccC
Q 001613 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIKSAV 627 (1044)
Q Consensus 549 kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~~A~ 627 (1044)
-|||-.|.+-+++++|.-.|+. ||.|.+|.|++|+.++ -+-.||||+|++.++.++|.-. ++..|+.|+|.|+++.
T Consensus 241 VLFVCKLNPVTtDeDLeiIFSr-FG~i~sceVIRD~ktg--dsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 241 VLFVCKLNPVTTDEDLEIIFSR-FGKIVSCEVIRDRKTG--DSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred eEEEEecCCcccccchhhHHhh-cccceeeeEEeccccc--chhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 4899999999999999999998 9999999999998776 7999999999999999999988 9999999999999987
Q ss_pred ChhH
Q 001613 628 PKEV 631 (1044)
Q Consensus 628 ~k~~ 631 (1044)
+-..
T Consensus 318 SVsk 321 (479)
T KOG0415|consen 318 SVSK 321 (479)
T ss_pred hhhh
Confidence 6544
No 174
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.89 E-value=2.5e-05 Score=94.69 Aligned_cols=120 Identities=23% Similarity=0.217 Sum_probs=97.2
Q ss_pred CchHHHHHHHcCCCCCcchhHHHHHhhHHHHHHHHHcCCC--CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 001613 239 RATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAV--ANGSCTDKKVGPPLILATQAGDEDVIEILLKSKNIDIN 316 (1044)
Q Consensus 239 g~t~L~~A~~~g~~~~~~~~~~~~~~l~~~velLl~~GAd--in~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~~gadvn 316 (1044)
+..-...|+++|+... |+..++.-.. .|.+|.|.-|+++|+.|+.+.+.+++++|+++ +..+
T Consensus 25 ~e~~fL~a~E~gd~~~--------------V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~-~~~~- 88 (822)
T KOG3609|consen 25 GEKGFLLAHENGDVPL--------------VAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDT-SSEE- 88 (822)
T ss_pred hhHHHHHHHHcCChHH--------------HHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcC-cccc-
Confidence 4455667888888877 6666665444 78889999999999999999999999999998 3222
Q ss_pred CCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCee----------eecCCCCCcHHHHHHHcCCHHHHHHHHh
Q 001613 317 DADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIV----------SQQNKLGLTALHIAAGSGNSQALEDLIR 386 (1044)
Q Consensus 317 ~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdv----------n~~d~~G~TpLh~Aa~~g~~eiVklLL~ 386 (1044)
..+|.+|+..| .+++|++++.+-... ...-.-+.|||.+||..+|+||+++||.
T Consensus 89 --------gdALL~aI~~~--------~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~ 152 (822)
T KOG3609|consen 89 --------GDALLLAIAVG--------SVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLT 152 (822)
T ss_pred --------chHHHHHHHHH--------HHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHH
Confidence 45899999999 999999999863322 1223457899999999999999999999
Q ss_pred cCCC
Q 001613 387 KEPD 390 (1044)
Q Consensus 387 ~gad 390 (1044)
+|+.
T Consensus 153 kg~~ 156 (822)
T KOG3609|consen 153 RGHC 156 (822)
T ss_pred cCCC
Confidence 9987
No 175
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.88 E-value=7.7e-06 Score=93.32 Aligned_cols=80 Identities=21% Similarity=0.403 Sum_probs=71.9
Q ss_pred ccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q 001613 545 EFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEI 623 (1044)
Q Consensus 545 ~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v 623 (1044)
...+++||.+|+..+...+|+.+|++ ||.|..+.|+..-.+- --|+||||++.+.++|-+||+. +.+++.||.|.|
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSK-yGKVvGAKVVTNaRsP--GaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISV 479 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSK-YGKVVGAKVVTNARSP--GARCYGFVTMSTSAEATKCIEHLHRTELHGRMISV 479 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHH-hcceeceeeeecCCCC--CcceeEEEEecchHHHHHHHHHhhhhhhcceeeee
Confidence 35689999999999999999999998 9999999998764332 3799999999999999999999 889999999999
Q ss_pred cccC
Q 001613 624 KSAV 627 (1044)
Q Consensus 624 ~~A~ 627 (1044)
..|.
T Consensus 480 EkaK 483 (940)
T KOG4661|consen 480 EKAK 483 (940)
T ss_pred eecc
Confidence 8874
No 176
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.87 E-value=7.7e-06 Score=97.13 Aligned_cols=78 Identities=28% Similarity=0.471 Sum_probs=72.2
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVE 622 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~ 622 (1044)
.-..+|||||+++..+++.+|+.+|+. ||+|.++.++ .+||+|||+.....+|.+|+.. .++.+.++.|+
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~fee-fGeiqSi~li--------~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Ik 488 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEE-FGEIQSIILI--------PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIK 488 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHh-cccceeEeec--------cCCceeEEEEeehhHHHHHHHHHhcccccceeeE
Confidence 445789999999999999999999998 9999999985 5899999999999999999999 99999999999
Q ss_pred EcccCChh
Q 001613 623 IKSAVPKE 630 (1044)
Q Consensus 623 v~~A~~k~ 630 (1044)
+.||..+-
T Consensus 489 i~Wa~g~G 496 (894)
T KOG0132|consen 489 IAWAVGKG 496 (894)
T ss_pred EeeeccCC
Confidence 99998653
No 177
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.87 E-value=1.3e-05 Score=99.79 Aligned_cols=80 Identities=31% Similarity=0.472 Sum_probs=73.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHHHc
Q 001613 363 KLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQ 442 (1044)
Q Consensus 363 ~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~~G~TpLh~Aa~~ 442 (1044)
..|.|+||.|+.+|..-++++||++|++ +|..|..|+||||.+...|+...+.+|+++||+.++.+.+|.+||++|...
T Consensus 654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~ 732 (785)
T KOG0521|consen 654 CIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEA 732 (785)
T ss_pred hcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhh
Confidence 4678999999999999999999999998 999999999999999999999999999999999999999999999999766
Q ss_pred C
Q 001613 443 D 443 (1044)
Q Consensus 443 g 443 (1044)
.
T Consensus 733 ~ 733 (785)
T KOG0521|consen 733 A 733 (785)
T ss_pred c
Confidence 5
No 178
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.81 E-value=2.9e-05 Score=95.95 Aligned_cols=124 Identities=21% Similarity=0.126 Sum_probs=52.9
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHH-hcCCeeeecCCC
Q 001613 286 KKVGPPLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILL-KHGAIVSQQNKL 364 (1044)
Q Consensus 286 ~~G~TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLL-e~GAdvn~~d~~ 364 (1044)
..|++.||.++..++.-.++.+++..|... ...|.+|.-.+|+++..| .++.-+|+ -+|..++.+|..
T Consensus 572 ~r~~lllhL~a~~lyawLie~~~e~~~~~~--~eld~d~qgV~hfca~lg---------~ewA~ll~~~~~~ai~i~D~~ 640 (975)
T KOG0520|consen 572 FRDMLLLHLLAELLYAWLIEKVIEWAGSGD--LELDRDGQGVIHFCAALG---------YEWAFLPISADGVAIDIRDRN 640 (975)
T ss_pred CcchHHHHHHHHHhHHHHHHHHhcccccCc--hhhcccCCChhhHhhhcC---------CceeEEEEeecccccccccCC
Confidence 344455555555555555555544211111 233444444444433222 23332332 234444555555
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCC-----cccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 001613 365 GLTALHIAAGSGNSQALEDLIRKEPDC-----INLKTIMMETPLFFAVKNDHMVCAEVLLR 420 (1044)
Q Consensus 365 G~TpLh~Aa~~g~~eiVklLL~~gad~-----in~~d~~G~TpLh~Aa~~g~~~iVklLL~ 420 (1044)
||||||+|+..|+..++..|++.|++. ++..+..|.|+-.+|-.+|+..+.-+|-+
T Consensus 641 G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse 701 (975)
T KOG0520|consen 641 GWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE 701 (975)
T ss_pred CCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence 555555555555555555555444431 12222334444444444444444444433
No 179
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=1e-05 Score=93.12 Aligned_cols=83 Identities=30% Similarity=0.388 Sum_probs=75.2
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVE 622 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~ 622 (1044)
.-+..+||+-|++..++++.|++.|+. ||+|..++|+.+..+ +++|||||.|.+.++|.+|+.. ++..++|+++.
T Consensus 267 ~~~~~nl~vknld~~~~~e~L~~~f~~-~GeI~s~kv~~~~~g---~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~ 342 (369)
T KOG0123|consen 267 SLQGANLYVKNLDETLSDEKLRKIFSS-FGEITSAKVMVDENG---KSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLY 342 (369)
T ss_pred cccccccccccCccccchhHHHHHHhc-ccceeeEEEEeccCC---CccceEEEEcCCHHHHHHHHHhhChhhhcCCchh
Confidence 346778999999999999999999998 999999999887655 5999999999999999999999 99999999999
Q ss_pred EcccCChh
Q 001613 623 IKSAVPKE 630 (1044)
Q Consensus 623 v~~A~~k~ 630 (1044)
|.++..++
T Consensus 343 vav~qr~~ 350 (369)
T KOG0123|consen 343 VAVAQRKE 350 (369)
T ss_pred hhHHhhhc
Confidence 99887444
No 180
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.74 E-value=3.3e-05 Score=91.48 Aligned_cols=92 Identities=28% Similarity=0.444 Sum_probs=75.9
Q ss_pred ccccccc-cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCC-CCCcccEEEEEeCCHHHHHHHHHh-CC
Q 001613 537 CMIHAST-QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEK-QSVSRGFGFVTFKHEKSAAAAVQA-RF 613 (1044)
Q Consensus 537 tpLh~aa-~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~-~g~srGfgFV~F~~~e~a~~A~~~-~~ 613 (1044)
...+.+. .+...+||+.|+.++.+.+.+...|.+ .|.|.++.|.+.++.. .-.|.|||||+|.+.++|++|++. +|
T Consensus 504 s~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k-~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqg 582 (725)
T KOG0110|consen 504 SLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSK-QGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQG 582 (725)
T ss_pred cchhhhhccccchhhhhhcCCcccchhHHHHHHHh-cCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcC
Confidence 3334444 344555999999999999999999998 9999999997665443 113569999999999999999999 99
Q ss_pred CccCCeEEEEcccCCh
Q 001613 614 VTIMGKEVEIKSAVPK 629 (1044)
Q Consensus 614 ~~i~Gr~i~v~~A~~k 629 (1044)
+.|+|+.|+|+.+..+
T Consensus 583 tvldGH~l~lk~S~~k 598 (725)
T KOG0110|consen 583 TVLDGHKLELKISENK 598 (725)
T ss_pred ceecCceEEEEeccCc
Confidence 9999999999998743
No 181
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.72 E-value=5.5e-05 Score=76.69 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=65.3
Q ss_pred CCeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccC
Q 001613 355 GAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNL 430 (1044)
Q Consensus 355 GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~ 430 (1044)
+.++|++|..|||||+.|+..|+.++|.+|+.+|+..+.+.|..|.+++.+|-+.|+.++|+.|.+.-.+-...++
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~n 77 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMN 77 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCccc
Confidence 4678999999999999999999999999999999555999999999999999999999999999987444433333
No 182
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.72 E-value=3.3e-05 Score=95.58 Aligned_cols=123 Identities=13% Similarity=0.109 Sum_probs=102.1
Q ss_pred CCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhc-CCeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCC
Q 001613 318 ADADADGNSALHCALKTSMGLSQHILQNRIVGILLKH-GAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKT 396 (1044)
Q Consensus 318 n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~-GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d 396 (1044)
......|+|.||+++..+ +...++.+++- |...+..|.+|...+|+ |..++++.+-+|+......++++|
T Consensus 568 ~~~~~r~~lllhL~a~~l--------yawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D 638 (975)
T KOG0520|consen 568 SSVNFRDMLLLHLLAELL--------YAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRD 638 (975)
T ss_pred ccCCCcchHHHHHHHHHh--------HHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeeccccccccc
Confidence 445678999999999999 89999999985 77777888888889999 667777887777766555599999
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHCCCCcccc------cCCCCcHHHHHHHcChHHHHH
Q 001613 397 IMMETPLFFAVKNDHMVCAEVLLRWGANSEVL------NLRRERPIDFAKSQDMRFLLK 449 (1044)
Q Consensus 397 ~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~------d~~G~TpLh~Aa~~g~~~Ll~ 449 (1044)
..|+||||+|+.+|+..++..|++.|++.++. +-.|.|+-.+|..+|+.-+-.
T Consensus 639 ~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~ 697 (975)
T KOG0520|consen 639 RNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAG 697 (975)
T ss_pred CCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHH
Confidence 99999999999999999999999998876543 346999999999888554433
No 183
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=97.69 E-value=2.1e-05 Score=85.75 Aligned_cols=79 Identities=22% Similarity=0.444 Sum_probs=72.8
Q ss_pred ccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEcc
Q 001613 547 KSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIKS 625 (1044)
Q Consensus 547 ~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~~ 625 (1044)
-.+|||..+-.+.+|++++..|+. ||+|..|.+.+++.+. .+|||||++|.+..+...|+.. |-..++|.-++|-+
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEA-FG~I~~C~LAr~pt~~--~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEA-FGEIVKCQLARAPTGR--GHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHh-hcceeeEEeeccCCCC--CccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 357999999999999999999998 9999999998887776 7999999999999999999999 88999999999988
Q ss_pred cCC
Q 001613 626 AVP 628 (1044)
Q Consensus 626 A~~ 628 (1044)
+..
T Consensus 287 ~vT 289 (544)
T KOG0124|consen 287 CVT 289 (544)
T ss_pred ccC
Confidence 753
No 184
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.68 E-value=2.6e-05 Score=97.18 Aligned_cols=100 Identities=27% Similarity=0.205 Sum_probs=87.3
Q ss_pred CCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 001613 312 NIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDC 391 (1044)
Q Consensus 312 gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad~ 391 (1044)
++++|....-..|.|+||.|+..+ ..-++++|+++|+++|.+|..|+||||.+...|+...+..|+++|++
T Consensus 644 ~~~~n~~~~~~~~~s~lh~a~~~~--------~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~- 714 (785)
T KOG0521|consen 644 GCCENWPVVLCIGCSLLHVAVGTG--------DSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGAD- 714 (785)
T ss_pred hhhhccchhhhcccchhhhhhccc--------hHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcccccc-
Confidence 455533334467889999999999 89999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 001613 392 INLKTIMMETPLFFAVKNDHMVCAEVLLR 420 (1044)
Q Consensus 392 in~~d~~G~TpLh~Aa~~g~~~iVklLL~ 420 (1044)
.++.+.+|.+||++|....+.+++-+|.-
T Consensus 715 ~~a~~~~~~~~l~~a~~~~~~d~~~l~~l 743 (785)
T KOG0521|consen 715 PNAFDPDGKLPLDIAMEAANADIVLLLRL 743 (785)
T ss_pred ccccCccCcchhhHHhhhccccHHHHHhh
Confidence 99999999999999988877777766554
No 185
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.62 E-value=2.4e-05 Score=81.63 Aligned_cols=80 Identities=28% Similarity=0.429 Sum_probs=72.0
Q ss_pred cceeccCCcccccCCCCCC----ccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q 001613 548 SKIFVGGLPFFLDSDSLGG----YFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVE 622 (1044)
Q Consensus 548 ~kifVg~L~~~~te~~Lr~----~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~ 622 (1044)
.+|||.||...+..++|+. +|++ ||+|.+|...+ +.+.||=|||.|.+.+.|..|+.+ +|.-+-||+++
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsq-fG~ildI~a~k-----t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQ-FGKILDISAFK-----TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHh-hCCeEEEEecC-----CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3999999999999999988 9998 99999998853 347999999999999999999999 99999999999
Q ss_pred EcccCChhHHH
Q 001613 623 IKSAVPKEVLF 633 (1044)
Q Consensus 623 v~~A~~k~~~~ 633 (1044)
++.|..+....
T Consensus 84 iqyA~s~sdii 94 (221)
T KOG4206|consen 84 IQYAKSDSDII 94 (221)
T ss_pred eecccCccchh
Confidence 99998876443
No 186
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.58 E-value=0.00013 Score=80.55 Aligned_cols=77 Identities=26% Similarity=0.232 Sum_probs=65.7
Q ss_pred chHHHHHHHcCCHHHHHHHHhCCCCCccccccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCchHHHHH
Q 001613 58 TKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLLPLELS 137 (1044)
Q Consensus 58 ~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T~lpLh~A 137 (1044)
.-=|.+||+.|.++.|++|++.| .+||.+|. ...+||.+|+..||.++|++||++||-.+.-.-+|.. -||+
T Consensus 37 f~elceacR~GD~d~v~~LVetg----vnVN~vD~-fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~R---C~Yg 108 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETG----VNVNAVDR-FDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDR---CHYG 108 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhC----CCcchhhc-ccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcch---hhhh
Confidence 34489999999999999999988 89999999 9999999999999999999999999977766667765 2455
Q ss_pred HhCCC
Q 001613 138 LSSSR 142 (1044)
Q Consensus 138 a~~g~ 142 (1044)
+.+.+
T Consensus 109 aLnd~ 113 (516)
T KOG0511|consen 109 ALNDR 113 (516)
T ss_pred hhhHH
Confidence 54443
No 187
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.55 E-value=4.2e-05 Score=88.54 Aligned_cols=78 Identities=27% Similarity=0.472 Sum_probs=67.9
Q ss_pred ceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCeEEEEcccCC
Q 001613 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQARFVTIMGKEVEIKSAVP 628 (1044)
Q Consensus 549 kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~~~~~i~Gr~i~v~~A~~ 628 (1044)
.|||++||.+++.++|++.|.+ ||.|+...|..-...+ +..+||||+|.+.++++.|++++...|+|+++.|+.-.+
T Consensus 290 ~i~V~nlP~da~~~~l~~~Fk~-FG~Ik~~~I~vr~~~~--~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 290 GIFVKNLPPDATPAELEEVFKQ-FGPIKEGGIQVRSPGG--KNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ceEeecCCCCCCHHHHHHHHhh-cccccccceEEeccCC--CcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 3999999999999999999998 9999999886544222 344999999999999999999999999999999987554
Q ss_pred h
Q 001613 629 K 629 (1044)
Q Consensus 629 k 629 (1044)
.
T Consensus 367 ~ 367 (419)
T KOG0116|consen 367 G 367 (419)
T ss_pred c
Confidence 3
No 188
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.51 E-value=0.00016 Score=73.38 Aligned_cols=68 Identities=29% Similarity=0.397 Sum_probs=63.6
Q ss_pred CCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcC-CeeeecCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 001613 313 IDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHG-AIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPD 390 (1044)
Q Consensus 313 advn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~G-Advn~~d~~G~TpLh~Aa~~g~~eiVklLL~~gad 390 (1044)
.+| |.+|..|+|||+.|+..| ..+.+.+|+.+| +.|-+.|..|.+++.+|-..|..++|+.|.+...+
T Consensus 3 ~~i--n~rD~fgWTalmcaa~eg--------~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e 71 (223)
T KOG2384|consen 3 GNI--NARDAFGWTALMCAAMEG--------SNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE 71 (223)
T ss_pred CCc--cchhhhcchHHHHHhhhc--------chhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence 355 999999999999999999 999999999999 99999999999999999999999999999988655
No 189
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.48 E-value=0.00029 Score=77.99 Aligned_cols=78 Identities=21% Similarity=0.210 Sum_probs=66.4
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHHHcChH
Q 001613 367 TALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMR 445 (1044)
Q Consensus 367 TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~~G~TpLh~Aa~~g~~ 445 (1044)
--|..||+.|+.+.|++|++.|.+ +|..|....+||.+|+..||.++|++|+++||-...-.-+|...+.-|..-..+
T Consensus 38 ~elceacR~GD~d~v~~LVetgvn-VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~YgaLnd~IR 115 (516)
T KOG0511|consen 38 GELCEACRAGDVDRVRYLVETGVN-VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGALNDRIR 115 (516)
T ss_pred HHHHHHhhcccHHHHHHHHHhCCC-cchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhhhhHHHH
Confidence 358899999999999999999988 999999999999999999999999999999997766556677665544444444
No 190
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.40 E-value=0.0001 Score=82.47 Aligned_cols=76 Identities=21% Similarity=0.316 Sum_probs=66.8
Q ss_pred cccccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeE
Q 001613 542 STQEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKE 620 (1044)
Q Consensus 542 aa~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~ 620 (1044)
++..+..+|||.|||++.|++.||+-|.. ||+|..+.||- .|+++| .|.|.++++|++|+.. ++..++||.
T Consensus 531 gaarKa~qIiirNlP~dfTWqmlrDKfre-~G~v~yadime-----~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~ 602 (608)
T KOG4212|consen 531 GAARKACQIIIRNLPFDFTWQMLRDKFRE-IGHVLYADIME-----NGKSKG--VVRFFSPEDAERACALMNGSRLDGRN 602 (608)
T ss_pred cccccccEEEEecCCccccHHHHHHHHHh-ccceehhhhhc-----cCCccc--eEEecCHHHHHHHHHHhccCcccCce
Confidence 33455667999999999999999999997 99999998842 346787 8999999999999999 999999999
Q ss_pred EEEcc
Q 001613 621 VEIKS 625 (1044)
Q Consensus 621 i~v~~ 625 (1044)
|.|..
T Consensus 603 I~V~y 607 (608)
T KOG4212|consen 603 IKVTY 607 (608)
T ss_pred eeeee
Confidence 99975
No 191
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.28 E-value=0.00033 Score=75.52 Aligned_cols=81 Identities=20% Similarity=0.294 Sum_probs=74.2
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCeEEEE
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQARFVTIMGKEVEI 623 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~~~~~i~Gr~i~v 623 (1044)
....+.+|+|++.+.++.+++..+|+. +|.|..+.+..|+..+ ++|||+||+|.+.+.+..|+..++..|.|+.+.|
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~-Cg~i~~~ti~~d~~~~--~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFES-CGGINRVTVPKDKFRG--HPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEV 174 (231)
T ss_pred ccCCceEEEeccccccccchhhheeec-cCCccceeeeccccCC--CcceeEEEecccHhhhHHHhhcCCccccccccee
Confidence 345678999999999999999999998 9999999998888776 6999999999999999999999999999999999
Q ss_pred cccC
Q 001613 624 KSAV 627 (1044)
Q Consensus 624 ~~A~ 627 (1044)
.+..
T Consensus 175 t~~r 178 (231)
T KOG4209|consen 175 TLKR 178 (231)
T ss_pred eeee
Confidence 8753
No 192
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.23 E-value=0.0001 Score=77.70 Aligned_cols=71 Identities=28% Similarity=0.597 Sum_probs=66.0
Q ss_pred cceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEccc
Q 001613 548 SKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIKSA 626 (1044)
Q Consensus 548 ~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~~A 626 (1044)
.++|||.+++.+.+.++..+|.+ ||.+.++.+ ..|||||+|.+..+|..|+.. ++.++.|..+.|.+|
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~-yg~~~d~~m----------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~ 70 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKG-YGKIPDADM----------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHA 70 (216)
T ss_pred CceeecccCCccchhHHHHHHhh-cccccccee----------ecccceeccCchhhhhcccchhcCceecceeeeeecc
Confidence 47899999999999999999998 999999988 689999999999999999999 999999999888888
Q ss_pred CCh
Q 001613 627 VPK 629 (1044)
Q Consensus 627 ~~k 629 (1044)
...
T Consensus 71 r~~ 73 (216)
T KOG0106|consen 71 RGK 73 (216)
T ss_pred ccc
Confidence 754
No 193
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.01 E-value=0.00014 Score=74.96 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=72.2
Q ss_pred cccccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeE
Q 001613 542 STQEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKE 620 (1044)
Q Consensus 542 aa~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~ 620 (1044)
++.+..++|||+++...++++-|.++|-+ -|+|.++.|..+++.+ .| |+||.|.++-.+.-|++. ||..+.++.
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~Elfiq-aGPV~kv~ip~~~d~~---~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e 78 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQ-AGPVYKVGIPSGQDQE---QK-FAYVFFPNENSVQLAGQLENGDDLEEDE 78 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhc-cCceEEEeCCCCccCC---Cc-eeeeecccccchhhhhhhcccchhccch
Confidence 34566789999999999999999999998 9999999998888776 56 999999999999999999 999999999
Q ss_pred EEEccc
Q 001613 621 VEIKSA 626 (1044)
Q Consensus 621 i~v~~A 626 (1044)
+.++..
T Consensus 79 ~q~~~r 84 (267)
T KOG4454|consen 79 EQRTLR 84 (267)
T ss_pred hhcccc
Confidence 888754
No 194
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=96.98 E-value=0.00068 Score=80.26 Aligned_cols=83 Identities=24% Similarity=0.404 Sum_probs=75.1
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecC-CCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEE
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQT-EKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEV 621 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~-~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i 621 (1044)
+.+++++|+||++..++++.|-..|.. ||+|..+++|..+. ....+.+-+|||-|-+..++++|+.. +|..+.+..+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGr-fgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGR-FGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcc-cCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 668899999999999999999999997 99999999998773 33336788999999999999999999 9999999999
Q ss_pred EEcccC
Q 001613 622 EIKSAV 627 (1044)
Q Consensus 622 ~v~~A~ 627 (1044)
++-|+.
T Consensus 250 K~gWgk 255 (877)
T KOG0151|consen 250 KLGWGK 255 (877)
T ss_pred eecccc
Confidence 999984
No 195
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.86 E-value=0.0011 Score=61.49 Aligned_cols=79 Identities=20% Similarity=0.245 Sum_probs=65.7
Q ss_pred ccceeccCCcccccCCCCCCccccCC-CCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccC----CeE
Q 001613 547 KSKIFVGGLPFFLDSDSLGGYFEKHF-GPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIM----GKE 620 (1044)
Q Consensus 547 ~~kifVg~L~~~~te~~Lr~~F~~~f-G~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~----Gr~ 620 (1044)
.++|.+.|+|...+.+.|.+.+...+ |...-+.++.|..++ .+.|||||.|.+++.|.+-.+. +|..+. .|.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~--~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kv 78 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNK--CNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKV 78 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCC--CceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcE
Confidence 36899999999999998888776423 677777888887666 6999999999999999999999 998874 677
Q ss_pred EEEcccC
Q 001613 621 VEIKSAV 627 (1044)
Q Consensus 621 i~v~~A~ 627 (1044)
++|.+|.
T Consensus 79 c~i~yAr 85 (97)
T PF04059_consen 79 CEISYAR 85 (97)
T ss_pred EEEehhH
Confidence 7888884
No 196
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=96.81 E-value=0.001 Score=71.77 Aligned_cols=80 Identities=24% Similarity=0.306 Sum_probs=71.0
Q ss_pred cccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEc
Q 001613 546 FKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIK 624 (1044)
Q Consensus 546 ~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~ 624 (1044)
...+|+|.||++.+.+++|+++|.+ ||.+..+-|-.++.+ ++.|-|=|+|...++|.+|++. ++.-++|+++.+.
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~-~~~~~r~~vhy~~~G---~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAE-FGELKRVAVHYDRAG---RSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHH-hccceEEeeccCCCC---CCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 4478999999999999999999998 998888888666544 6999999999999999999999 9999999999888
Q ss_pred ccCCh
Q 001613 625 SAVPK 629 (1044)
Q Consensus 625 ~A~~k 629 (1044)
...+.
T Consensus 158 ~i~~~ 162 (243)
T KOG0533|consen 158 IISSP 162 (243)
T ss_pred EecCc
Confidence 76543
No 197
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=96.63 E-value=0.0026 Score=65.99 Aligned_cols=85 Identities=24% Similarity=0.323 Sum_probs=65.8
Q ss_pred cccccccceeccCCcccccCCCCCCccccCCCCcceEEEe-eecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccC--
Q 001613 542 STQEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVA-EFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIM-- 617 (1044)
Q Consensus 542 aa~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~-~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~-- 617 (1044)
.+.+.++++||.|||.++..-++..+|.. |-.-+.+.+- .++... -.+-+|||+|.+..+|.+|+.+ ||..++
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~-f~GYEgslLK~Tsk~~~--~~~pvaFatF~s~q~A~aamnaLNGvrFDpE 105 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRR-FHGYEGSLLKYTSKGDQ--VCKPVAFATFTSHQFALAAMNALNGVRFDPE 105 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhcc-CCCccceeeeeccCCCc--cccceEEEEecchHHHHHHHHHhcCeeeccc
Confidence 33567999999999999999999999997 7555555442 222221 4568999999999999999999 998875
Q ss_pred -CeEEEEcccCCh
Q 001613 618 -GKEVEIKSAVPK 629 (1044)
Q Consensus 618 -Gr~i~v~~A~~k 629 (1044)
+..+++..|++.
T Consensus 106 ~~stLhiElAKSN 118 (284)
T KOG1457|consen 106 TGSTLHIELAKSN 118 (284)
T ss_pred cCceeEeeehhcC
Confidence 567777777653
No 198
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=96.58 E-value=0.00076 Score=59.45 Aligned_cols=49 Identities=31% Similarity=0.587 Sum_probs=41.1
Q ss_pred CCCccccccccchhhhccccccccccCchhhhHHHhhccccceeeeeecC
Q 001613 753 EGKYALSSLKTDFKAVCGLELDHASLGYSKLSDFLRTLPDLCHVKAGPIG 802 (1044)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1044)
.|..++|.+...|+..+ -.+|...+||.+|++|++++|++++|.-.+=|
T Consensus 21 ~g~v~ls~l~~~~~~~~-~~f~~~~yG~~~l~~ll~~~~~~~~i~~~~~g 69 (74)
T PF12872_consen 21 DGWVSLSQLGQEYKKKY-PDFDPRDYGFSSLSELLESLPDVVEIEERQHG 69 (74)
T ss_dssp TSSEEHHHHHHHHHHHH-TT--TCCTTSSSHHHHHHT-TTTEEEEEEECC
T ss_pred CceEEHHHHHHHHHHHC-CCCCccccCCCcHHHHHHhCCCeEEEeeeCCC
Confidence 35799999999999999 99999999999999999999999999654433
No 199
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.56 E-value=0.00091 Score=78.60 Aligned_cols=84 Identities=25% Similarity=0.505 Sum_probs=78.4
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVE 622 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~ 622 (1044)
.+..-+||+|+||...+++++++.... ||.+....++.+..++ .++||+|.+|.+......|+.. ||..++++.+.
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~-fg~lk~f~lv~d~~~g--~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lv 362 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDS-FGPLKAFRLVKDSATG--NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLV 362 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHh-cccchhheeecccccc--cccceeeeeeeCCcchhhhhcccchhhhcCceeE
Confidence 667889999999999999999999997 9999999999888774 7999999999999999999999 99999999999
Q ss_pred EcccCChh
Q 001613 623 IKSAVPKE 630 (1044)
Q Consensus 623 v~~A~~k~ 630 (1044)
|+.|.+..
T Consensus 363 vq~A~~g~ 370 (500)
T KOG0120|consen 363 VQRAIVGA 370 (500)
T ss_pred eehhhccc
Confidence 99997654
No 200
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=96.32 E-value=0.0057 Score=41.58 Aligned_cols=29 Identities=48% Similarity=0.607 Sum_probs=25.1
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q 001613 94 SGMTALHLAAESHTARCVELLLKKRARTD 122 (1044)
Q Consensus 94 ~G~TpLH~Aa~~G~~eiVklLL~~GAdvn 122 (1044)
.|.||||+|+..|+.+++++|+++|.+++
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 36799999999999999999999888764
No 201
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.07 E-value=0.0043 Score=71.37 Aligned_cols=79 Identities=18% Similarity=0.269 Sum_probs=66.4
Q ss_pred cccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCeEEEEcc
Q 001613 546 FKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQARFVTIMGKEVEIKS 625 (1044)
Q Consensus 546 ~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~~~~~i~Gr~i~v~~ 625 (1044)
...-|-+.+|||++|++++.++|+. -.|+.+.+ .+. +||..|-|||+|.++|++++|++.+-..+..|-|+|-.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~--~~I~~~~~--~r~--~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSN--CGIENLEI--PRR--NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFT 82 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhc--CceeEEEE--ecc--CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEc
Confidence 3445677999999999999999995 46777555 333 35899999999999999999999999999999999998
Q ss_pred cCChh
Q 001613 626 AVPKE 630 (1044)
Q Consensus 626 A~~k~ 630 (1044)
+.+.+
T Consensus 83 ~~~~e 87 (510)
T KOG4211|consen 83 AGGAE 87 (510)
T ss_pred cCCcc
Confidence 87655
No 202
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=96.04 E-value=0.0026 Score=74.01 Aligned_cols=81 Identities=20% Similarity=0.301 Sum_probs=74.9
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCeEEEE
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQARFVTIMGKEVEI 623 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~~~~~i~Gr~i~v 623 (1044)
+-..+++|+.-+....+.-+|.++|+. +|+|.+|+++.|+.+. +++|-+||+|.+.+.+..|+...|..+.|-+|.|
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~-~gkVrdVriI~Dr~s~--rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~v 252 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSI-VGKVRDVRIIGDRNSR--RSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIV 252 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHh-hcCcceeEeeccccch--hhcceeEEEEecccchhhHhhhcCCcccCceeEe
Confidence 445789999999999999999999998 9999999999999887 7999999999999999999988999999999999
Q ss_pred cccC
Q 001613 624 KSAV 627 (1044)
Q Consensus 624 ~~A~ 627 (1044)
+...
T Consensus 253 q~sE 256 (549)
T KOG0147|consen 253 QLSE 256 (549)
T ss_pred cccH
Confidence 8653
No 203
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=95.88 E-value=0.0095 Score=68.61 Aligned_cols=70 Identities=16% Similarity=0.280 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCCCCcccC------CCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHHHcChHHHH
Q 001613 378 SQALEDLIRKEPDCINLK------TIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLL 448 (1044)
Q Consensus 378 ~eiVklLL~~gad~in~~------d~~G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~Ll 448 (1044)
...+++|.+++.+ .|.. +..--|+||||+..|..++|.+||+.|+|+..+|..|+||..++....++.+.
T Consensus 404 p~~ie~lken~ls-gnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nkdVk~~F 479 (591)
T KOG2505|consen 404 PDSIEALKENLLS-GNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANKDVKSIF 479 (591)
T ss_pred hhHHHHHHhcCCc-ccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccccHHHHHHH
Confidence 5678888888776 5432 33457999999999999999999999999999999999999999855544443
No 204
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=95.87 E-value=0.013 Score=39.75 Aligned_cols=28 Identities=32% Similarity=0.480 Sum_probs=19.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCcc
Q 001613 399 METPLFFAVKNDHMVCAEVLLRWGANSE 426 (1044)
Q Consensus 399 G~TpLh~Aa~~g~~~iVklLL~~GAdin 426 (1044)
|.||||+|+..++.+++++|+++|.+++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 5677777777777777777777766553
No 205
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.79 E-value=0.0067 Score=66.92 Aligned_cols=80 Identities=18% Similarity=0.315 Sum_probs=68.5
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcce--------EEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCC
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIED--------ARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFV 614 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~--------~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~ 614 (1044)
....+.|||.|||.++|.+++.++|++ +|-|.. |.+-++.+ |+.||=|.+.|-..+++.-|++. ++.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sK-cGiI~~d~~t~epk~KlYrd~~---G~lKGDaLc~y~K~ESVeLA~~ilDe~ 206 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSK-CGIIMRDPQTGEPKVKLYRDNQ---GKLKGDALCCYIKRESVELAIKILDED 206 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHh-cceEeccCCCCCeeEEEEecCC---CCccCceEEEeecccHHHHHHHHhCcc
Confidence 445667999999999999999999998 887643 44544433 67999999999999999999999 999
Q ss_pred ccCCeEEEEcccC
Q 001613 615 TIMGKEVEIKSAV 627 (1044)
Q Consensus 615 ~i~Gr~i~v~~A~ 627 (1044)
.+.|+.|+|.+|.
T Consensus 207 ~~rg~~~rVerAk 219 (382)
T KOG1548|consen 207 ELRGKKLRVERAK 219 (382)
T ss_pred cccCcEEEEehhh
Confidence 9999999999884
No 206
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.71 E-value=0.021 Score=62.59 Aligned_cols=82 Identities=18% Similarity=0.351 Sum_probs=62.7
Q ss_pred cccceeccCCcccccCCCC------CCccccCCCCcceEEEeeecCCCCCCccc-EE-EEEeCCHHHHHHHHHh-CCCcc
Q 001613 546 FKSKIFVGGLPFFLDSDSL------GGYFEKHFGPIEDARVAEFQTEKQSVSRG-FG-FVTFKHEKSAAAAVQA-RFVTI 616 (1044)
Q Consensus 546 ~~~kifVg~L~~~~te~~L------r~~F~~~fG~v~~~~v~~d~~~~~g~srG-fg-FV~F~~~e~a~~A~~~-~~~~i 616 (1044)
|+.-+||-+++..+-+++. .++|.| ||.|..+.|-+.-.... --.+ +| |++|.+.|+|.+|+.+ +|..+
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQ-yGkI~KIvvNkkt~s~n-st~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQ-YGKIKKIVVNKKTSSLN-STASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhh-ccceeEEEecccccccc-cccccceEEEEecchHHHHHHHHHhccccc
Confidence 4555899999998888773 458998 99999998843321111 1122 32 9999999999999999 99999
Q ss_pred CCeEEEEcccCCh
Q 001613 617 MGKEVEIKSAVPK 629 (1044)
Q Consensus 617 ~Gr~i~v~~A~~k 629 (1044)
+||.++.....-|
T Consensus 191 DGr~lkatYGTTK 203 (480)
T COG5175 191 DGRVLKATYGTTK 203 (480)
T ss_pred cCceEeeecCchH
Confidence 9999998876544
No 207
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=95.55 E-value=0.0056 Score=49.75 Aligned_cols=49 Identities=24% Similarity=0.654 Sum_probs=42.4
Q ss_pred cceeecccccccccccCcccchhhcchhhHHHHHhhhcCcceeeeecccccce
Q 001613 973 QKICFRCKKEEMQWANNPCQHLLWCNVCKRETIEAAAGSEHLCVICDKKVEDI 1025 (1044)
Q Consensus 973 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1025 (1044)
...|.-|..+...+.-.||.|...|..|.....+ ...+|.+|.+.|+++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~----~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLK----RKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH----TTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcc----cCCCCCcCChhhcCC
Confidence 3578999999989999999999999999999988 788999999999875
No 208
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.32 E-value=0.0037 Score=72.97 Aligned_cols=71 Identities=28% Similarity=0.396 Sum_probs=63.2
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVE 622 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~ 622 (1044)
.-..++|+|-+|+..+++++|+..|+. ||+|++++- +. ..+|--||+|-+..+|++|+++ ++.+|.|+.+.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~-yGeir~ir~-----t~--~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGA-YGEIREIRE-----TP--NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHh-hcchhhhhc-----cc--ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 345688999999999999999999998 999999554 22 5799999999999999999999 99999999888
No 209
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.30 E-value=0.0097 Score=69.04 Aligned_cols=102 Identities=28% Similarity=0.350 Sum_probs=77.8
Q ss_pred cccccccccccccccccCCCccccccccccccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccE
Q 001613 515 IRGSKCFYALGEEQHRKMNPGMCMIHASTQEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGF 594 (1044)
Q Consensus 515 ~eivk~Ll~~GAd~~~~d~~G~tpLh~aa~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGf 594 (1044)
++|+-|.+...-.+.. +..+ -+.+++||||+||.-++.++|-..|+..||.|.-+-|=.|++-+ -++|-
T Consensus 347 VQIrPW~laDs~fv~d----~sq~-----lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~K--YPkGa 415 (520)
T KOG0129|consen 347 VQIRPWVLADSDFVLD----HNQP-----IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLK--YPKGA 415 (520)
T ss_pred eeEEeeEeccchhhhc----cCcc-----cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccC--CCCCc
Confidence 4555566654433321 2222 45689999999999999999999999779999998885554444 79999
Q ss_pred EEEEeCCHHHHHHHHHhCCCcc----CCeEEEEcccC
Q 001613 595 GFVTFKHEKSAAAAVQARFVTI----MGKEVEIKSAV 627 (1044)
Q Consensus 595 gFV~F~~~e~a~~A~~~~~~~i----~Gr~i~v~~A~ 627 (1044)
|=|+|.+..+-.+||.+...+| -.|+|+|+.-.
T Consensus 416 GRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPYv 452 (520)
T KOG0129|consen 416 GRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPYV 452 (520)
T ss_pred ceeeecccHHHHHHHhhheEEEeccccceeeeeccee
Confidence 9999999999999999976555 34678887543
No 210
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=95.20 E-value=0.042 Score=63.57 Aligned_cols=67 Identities=24% Similarity=0.280 Sum_probs=46.7
Q ss_pred CHHHHHHHHhCCCCCccccccc--cCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCchHHHHHH
Q 001613 69 SVSCATSLVNGDLGPVALVNEV--EESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLLPLELSL 138 (1044)
Q Consensus 69 ~~eivk~LL~~g~~~~adiN~~--d~~~G~TpLH~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T~lpLh~Aa 138 (1044)
-.+.+++|.+++...+.++--. +. .--|+||||+..|..++|.+||+.|+|+.++|..|+| |..++.
T Consensus 403 ~p~~ie~lken~lsgnf~~~pe~~~~-ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grt--py~ls~ 471 (591)
T KOG2505|consen 403 EPDSIEALKENLLSGNFDVTPEANDY-LTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRT--PYSLSA 471 (591)
T ss_pred chhHHHHHHhcCCccccccccccccc-ccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCC--cccccc
Confidence 3557777877763332222222 22 3458888888888888888888888888888888888 666665
No 211
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=94.96 E-value=0.0091 Score=66.67 Aligned_cols=82 Identities=28% Similarity=0.437 Sum_probs=72.9
Q ss_pred ccccee-ccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCeEEEEc
Q 001613 546 FKSKIF-VGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQARFVTIMGKEVEIK 624 (1044)
Q Consensus 546 ~~~kif-Vg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~~~~~i~Gr~i~v~ 624 (1044)
...++| ++++++.+++++++.+|.. +|.|..+++..++.++ .++|||||.|........++..+...+.|+++.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~-~~~i~~~r~~~~~~s~--~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVS-SGEITSVRLPTDEESG--DSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLE 259 (285)
T ss_pred ccccceeecccccccchHHHhhhccC-cCcceeeccCCCCCcc--chhhhhhhhhhhchhHHHHhhcccCcccCcccccc
Confidence 445666 9999999999999999997 9999999998777766 89999999999999999999887788999999999
Q ss_pred ccCChh
Q 001613 625 SAVPKE 630 (1044)
Q Consensus 625 ~A~~k~ 630 (1044)
...++.
T Consensus 260 ~~~~~~ 265 (285)
T KOG4210|consen 260 EDEPRP 265 (285)
T ss_pred cCCCCc
Confidence 987764
No 212
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=94.76 E-value=0.022 Score=65.73 Aligned_cols=76 Identities=21% Similarity=0.290 Sum_probs=62.6
Q ss_pred ceeccCCcccccCCCCCCccccCCCCcce-EEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCeEEEEcccC
Q 001613 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIED-ARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQARFVTIMGKEVEIKSAV 627 (1044)
Q Consensus 549 kifVg~L~~~~te~~Lr~~F~~~fG~v~~-~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~~~~~i~Gr~i~v~~A~ 627 (1044)
-|-+.+||+.++++++.++|+. .--|.+ +-++.++ +||+-|-|||.|++.+.|++|+..+...|+-|-|+|.++.
T Consensus 105 vVRLRGLPfscte~dI~~FFaG-L~Iv~~gi~l~~d~---rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 105 VVRLRGLPFSCTEEDIVEFFAG-LEIVPDGILLPMDQ---RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred eEEecCCCccCcHHHHHHHhcC-CcccccceeeeccC---CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhH
Confidence 4667899999999999999986 544444 3333443 4479999999999999999999999999999999999875
Q ss_pred C
Q 001613 628 P 628 (1044)
Q Consensus 628 ~ 628 (1044)
-
T Consensus 181 ~ 181 (510)
T KOG4211|consen 181 R 181 (510)
T ss_pred H
Confidence 3
No 213
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=93.42 E-value=0.028 Score=59.60 Aligned_cols=71 Identities=18% Similarity=0.337 Sum_probs=61.6
Q ss_pred ccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q 001613 545 EFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEI 623 (1044)
Q Consensus 545 ~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v 623 (1044)
.....+++-+++..+.+.+|.++|.+ ||.+..... .++|+||.|+++++|.+|++. ++..+.|+.|.+
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~-~g~~~~~~~----------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRP-AGEVTYVDA----------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcc-cCCCchhhh----------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 34567888999999999999999998 999954433 588999999999999999999 999999999999
Q ss_pred ccc
Q 001613 624 KSA 626 (1044)
Q Consensus 624 ~~A 626 (1044)
..+
T Consensus 166 ~~~ 168 (216)
T KOG0106|consen 166 EKN 168 (216)
T ss_pred ccc
Confidence 443
No 214
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=92.77 E-value=0.048 Score=60.03 Aligned_cols=79 Identities=19% Similarity=0.296 Sum_probs=61.1
Q ss_pred ccccceeccCCcccccCCCCCCccccCCC--CcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEE
Q 001613 545 EFKSKIFVGGLPFFLDSDSLGGYFEKHFG--PIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEV 621 (1044)
Q Consensus 545 ~~~~kifVg~L~~~~te~~Lr~~F~~~fG--~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i 621 (1044)
..+.-+|||||-|.+++++|.+.+.. -| .+.++++...+. .|+||||+.|...+..+.++.++. -..+|.|..-
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S-~G~~~~~dmKFFENR~--NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P 154 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQS-TGLAQFADMKFFENRT--NGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSP 154 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHh-hhHHHHhhhhhhhccc--CCcccceEEEEecchHHHHHHHHhcccceecCCCC
Confidence 34456899999999999999887764 55 344555544443 458999999999999999999999 8888988766
Q ss_pred EEccc
Q 001613 622 EIKSA 626 (1044)
Q Consensus 622 ~v~~A 626 (1044)
.|..-
T Consensus 155 ~V~~~ 159 (498)
T KOG4849|consen 155 TVLSY 159 (498)
T ss_pred eeecc
Confidence 66543
No 215
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=92.60 E-value=0.23 Score=52.36 Aligned_cols=47 Identities=28% Similarity=0.222 Sum_probs=34.5
Q ss_pred CHHHHHHHHhcCCCCcccC---CCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q 001613 377 NSQALEDLIRKEPDCINLK---TIMMETPLFFAVKNDHMVCAEVLLRWGA 423 (1044)
Q Consensus 377 ~~eiVklLL~~gad~in~~---d~~G~TpLh~Aa~~g~~~iVklLL~~GA 423 (1044)
+..+++++|++|-.++|.+ -..|.|-|.-|+++++.+++.+||++||
T Consensus 229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA 278 (284)
T PF06128_consen 229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA 278 (284)
T ss_pred cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence 3467777777776666643 3567888888888888888888888887
No 216
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=92.49 E-value=0.089 Score=61.37 Aligned_cols=67 Identities=24% Similarity=0.564 Sum_probs=51.2
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCccc---EEEEEeCCHHHHHHHHHh
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRG---FGFVTFKHEKSAAAAVQA 611 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srG---fgFV~F~~~e~a~~A~~~ 611 (1044)
.-..+|||||+||++++|+.+...|.+ ||.+..=.=.+....+.-.++| |.|..|+++..+..-+.+
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~-FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQ-FGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred cccccceeecCCCccccHHHHHhhccc-ccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 445789999999999999999999998 9987632221122222224677 999999999999988877
No 217
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=92.26 E-value=0.044 Score=57.17 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=50.4
Q ss_pred ccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCcc
Q 001613 545 EFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTI 616 (1044)
Q Consensus 545 ~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i 616 (1044)
....++||.||...++|++|+..|+. |-....+++ +..+ .-..+||+|++.+.|-.||.. +|..|
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~-~~gf~~l~~---~~~~---g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSR-YPGFHILKI---RARG---GMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHh-CCCceEEEE---ecCC---CcceEeecHHHHHHHHHHHHHhhccee
Confidence 34679999999999999999999997 876666665 2222 245889999999988888877 65443
No 218
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=91.92 E-value=0.87 Score=48.20 Aligned_cols=120 Identities=14% Similarity=0.049 Sum_probs=75.4
Q ss_pred HHHHHHhcCHHHHHHHHHhhccccccccccccccccchHHHHHHHcCCHHHHHHHHhCCCCCccccccccCCCCChHHHH
Q 001613 22 IINSLLEDDKKQLINVSKRHFIDNSLDNADQQTAIVTKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHL 101 (1044)
Q Consensus 22 ll~AIl~dD~~~L~~li~~~~~~~~l~~~~~~~~~~~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~ 101 (1044)
+=+||..-|.+++-.++.+ ..+..++|-+|...+..+++-+|+.+. .....|-
T Consensus 157 ledAV~AsN~~~i~~~Vtd-------------KkdA~~Am~~si~~~K~dva~~lls~f-----~ft~~dv--------- 209 (284)
T PF06128_consen 157 LEDAVKASNYEEISNLVTD-------------KKDAHQAMWLSIGNAKEDVALYLLSKF-----NFTKQDV--------- 209 (284)
T ss_pred HHHHHhhcCHHHHHHHhcc-------------hHHHHHHHHHHhcccHHHHHHHHHhhc-----ceecchh---------
Confidence 4457777777777665532 234478899999888888999999763 2333333
Q ss_pred HHHcCCHHHHHHHHHc-CCCCCcccCCCCCchHHHHHHhCCCcceec--CCCCCchhHHHHHHhcCCHHHHHHHHHcCCC
Q 001613 102 AAESHTARCVELLLKK-RARTDIRSKDGRRLLPLELSLSSSRMDVIW--NPDEYSVEDLVVILGQKNLTTVKLLSQKTKE 178 (1044)
Q Consensus 102 Aa~~G~~eiVklLL~~-GAdvn~~d~~G~T~lpLh~Aa~~g~~eIv~--~~~~~~~t~L~~Ai~~g~~eivklLl~~gad 178 (1044)
|-..-.+.=|+|||+. ||+.. .|.+-+.+|-.++-. ...+.|.|.|.-|+..++.+++.+|+++|+-
T Consensus 210 ~~~~~~~ydieY~LS~h~a~~k----------vL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 210 ASMEKELYDIEYLLSEHSASYK----------VLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI 279 (284)
T ss_pred hhcCcchhhHHHHHhhcCCcHH----------HHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence 2222233344555442 44322 344444444444432 2234488899999999999999999999974
No 219
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=91.87 E-value=0.68 Score=47.71 Aligned_cols=111 Identities=15% Similarity=0.170 Sum_probs=72.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHH----HHHHhcCCeeeecC
Q 001613 287 KVGPPLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIV----GILLKHGAIVSQQN 362 (1044)
Q Consensus 287 ~G~TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iV----klLLe~GAdvn~~d 362 (1044)
..++.+-.||+..+.++|+++-+. ..+ .+-.+-+-+|.... +.++. .+++++...-...|
T Consensus 75 ~~q~LFElAC~~qkydiV~WI~qn--L~i------~~~~~iFdIA~~~k--------DlsLyslGY~l~~~~~~~~~~~d 138 (192)
T PF03158_consen 75 LNQELFELACEEQKYDIVKWIGQN--LHI------YNPEDIFDIAFAKK--------DLSLYSLGYKLLFNRMMSEHNED 138 (192)
T ss_pred HHHHHHHHHHHHccccHHHHHhhc--cCC------CCchhhhhhhhhcc--------chhHHHHHHHHHHhhcccccccC
Confidence 556788999999999999999542 222 33445667777766 44432 22333322110011
Q ss_pred C--CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 001613 363 K--LGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLR 420 (1044)
Q Consensus 363 ~--~G~TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~ 420 (1044)
. .-..-|..|+..|-...|...|++|.+ ++. ++|..|+++++..|+.+++.
T Consensus 139 ~~~ll~~hl~~a~~kgll~F~letlkygg~-~~~------~vls~Av~ynhRkIL~yfi~ 191 (192)
T PF03158_consen 139 PTSLLTQHLEKAAAKGLLPFVLETLKYGGN-VDI------IVLSQAVKYNHRKILDYFIR 191 (192)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHcCCc-ccH------HHHHHHHHhhHHHHHHHhhc
Confidence 0 001235678999999999999999888 543 88999999999999988875
No 220
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.55 E-value=0.075 Score=56.57 Aligned_cols=46 Identities=26% Similarity=0.692 Sum_probs=37.6
Q ss_pred cceeecccccccccccCcccchhhcchhhHHHHHhhhcCcceeeeeccccccee
Q 001613 973 QKICFRCKKEEMQWANNPCQHLLWCNVCKRETIEAAAGSEHLCVICDKKVEDIM 1026 (1044)
Q Consensus 973 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1026 (1044)
.++|+.|+++++-=.=-||+|+-||+.|-.- -..|.+|.-.+..-+
T Consensus 158 ~~~Cr~C~~~~~~VlllPCrHl~lC~~C~~~--------~~~CPiC~~~~~s~~ 203 (207)
T KOG1100|consen 158 MRSCRKCGEREATVLLLPCRHLCLCGICDES--------LRICPICRSPKTSSV 203 (207)
T ss_pred cccceecCcCCceEEeecccceEeccccccc--------CccCCCCcChhhcee
Confidence 4459999999999999999999999999531 456999987766543
No 221
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=91.47 E-value=0.069 Score=59.77 Aligned_cols=84 Identities=18% Similarity=0.262 Sum_probs=71.8
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcce--------EEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCC
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIED--------ARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFV 614 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~--------~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~ 614 (1044)
..+..+|||-+|+..+++..+.++|.+ .|.|.. +.+-+|+ .|+++||=|-|+|.+.-.|++|++- ++.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~q-cg~ikrnK~t~kPki~~y~dk--eT~~~KGeatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQ-CGVIKRNKRTGKPKIKIYTDK--ETGAPKGEATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhh-cceeccCCCCCCcchhccccc--cccCcCCceeeeecChhhhhhhhhhhccc
Confidence 456789999999999999999999998 887753 3444444 5569999999999999999999999 999
Q ss_pred ccCCeEEEEcccCChh
Q 001613 615 TIMGKEVEIKSAVPKE 630 (1044)
Q Consensus 615 ~i~Gr~i~v~~A~~k~ 630 (1044)
.+.|..|+|..|..+.
T Consensus 140 df~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 140 DFCGNTIKVSLAERRT 155 (351)
T ss_pred cccCCCchhhhhhhcc
Confidence 9999999998887554
No 222
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=90.62 E-value=0.14 Score=57.15 Aligned_cols=83 Identities=19% Similarity=0.304 Sum_probs=64.6
Q ss_pred cccceeccCCcccccCCCC---CCccccCCCCcceEEEeeecC--CCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCe
Q 001613 546 FKSKIFVGGLPFFLDSDSL---GGYFEKHFGPIEDARVAEFQT--EKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGK 619 (1044)
Q Consensus 546 ~~~kifVg~L~~~~te~~L---r~~F~~~fG~v~~~~v~~d~~--~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr 619 (1044)
++..+|+.+|+....++.+ .++|.+ ||.|..+.+-++.. ...|..- -++|+|...++|..|+.. +|..++|+
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgq-ygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~ 153 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQ-YGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGR 153 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccc-cccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhh
Confidence 4566888899988766655 458998 99999999877662 1211122 289999999999999999 99999999
Q ss_pred EEEEcccCChh
Q 001613 620 EVEIKSAVPKE 630 (1044)
Q Consensus 620 ~i~v~~A~~k~ 630 (1044)
.++......+-
T Consensus 154 ~lka~~gttky 164 (327)
T KOG2068|consen 154 ALKASLGTTKY 164 (327)
T ss_pred hhHHhhCCCcc
Confidence 98888777664
No 223
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=90.31 E-value=0.13 Score=48.78 Aligned_cols=68 Identities=24% Similarity=0.351 Sum_probs=40.1
Q ss_pred eeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh---C---CCccCCeEEEE
Q 001613 550 IFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA---R---FVTIMGKEVEI 623 (1044)
Q Consensus 550 ifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~---~---~~~i~Gr~i~v 623 (1044)
|.+.|+...++.++|++.|++ ||.|.-|.+. +.-.-|||.|.++++|++|++. . +..|.+..+.+
T Consensus 4 l~~~g~~~~~~re~iK~~f~~-~g~V~yVD~~--------~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 4 LKFSGLGEPTSREDIKEAFSQ-FGEVAYVDFS--------RGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp EEEEE--SS--HHHHHHHT-S-S--EEEEE----------TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred EEEecCCCCcCHHHHHHHHHh-cCCcceEEec--------CCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 455668888889999999998 9998888773 2234789999999999999986 3 35677776666
Q ss_pred ccc
Q 001613 624 KSA 626 (1044)
Q Consensus 624 ~~A 626 (1044)
..-
T Consensus 75 ~vL 77 (105)
T PF08777_consen 75 EVL 77 (105)
T ss_dssp E--
T ss_pred EEC
Confidence 543
No 224
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=88.54 E-value=0.087 Score=56.30 Aligned_cols=72 Identities=15% Similarity=0.314 Sum_probs=58.8
Q ss_pred cceeccCCcccccCCCCCCccccCCCCcceEEEeeecCC------CCCCccc----EEEEEeCCHHHHHHHHHh-CCCcc
Q 001613 548 SKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTE------KQSVSRG----FGFVTFKHEKSAAAAVQA-RFVTI 616 (1044)
Q Consensus 548 ~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~------~~g~srG----fgFV~F~~~e~a~~A~~~-~~~~i 616 (1044)
--||++++|..++...||+.|++ ||.|-.|.+-..... +.|..++ -|.|+|.+...|+++.+. |+..|
T Consensus 75 GVvylS~IPp~m~~~rlReil~~-yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQ-YGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHh-ccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 34899999999999999999998 999999988544333 1122333 378999999999999999 99999
Q ss_pred CCeE
Q 001613 617 MGKE 620 (1044)
Q Consensus 617 ~Gr~ 620 (1044)
+|++
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9986
No 225
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=88.15 E-value=0.3 Score=57.40 Aligned_cols=72 Identities=19% Similarity=0.251 Sum_probs=53.6
Q ss_pred ceeccCCcccccC------CCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCC-eE
Q 001613 549 KIFVGGLPFFLDS------DSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMG-KE 620 (1044)
Q Consensus 549 kifVg~L~~~~te------~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~G-r~ 620 (1044)
-|+|.|+|---.+ .-+...|++ +|++....+..+..++ ++||.|++|++..+|+.|++. +|+.++- ..
T Consensus 60 vVvv~g~PvV~~~rl~klk~vl~kvfsk-~gk~vn~~~P~~e~gg---tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 60 VVVVDGAPVVGPARLEKLKKVLTKVFSK-AGKIVNMYYPIDEEGG---TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred EEEECCCcccChhHHHHHHHHHHHHHHh-hccccceeeccCccCC---eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3555665542221 223568898 9999999998887776 999999999999999999999 8877754 34
Q ss_pred EEEc
Q 001613 621 VEIK 624 (1044)
Q Consensus 621 i~v~ 624 (1044)
..|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 4443
No 226
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=87.94 E-value=0.5 Score=56.20 Aligned_cols=64 Identities=16% Similarity=0.210 Sum_probs=54.0
Q ss_pred CCCCCccccCCCCcceEEEeee-cCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEccc
Q 001613 562 DSLGGYFEKHFGPIEDARVAEF-QTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIKSA 626 (1044)
Q Consensus 562 ~~Lr~~F~~~fG~v~~~~v~~d-~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~~A 626 (1044)
++++..+.+ ||.|.+|.+.++ ......-.-|--||+|++.+++++|+++ .|..+.||.|....-
T Consensus 424 Edvr~ec~k-~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 424 EDVRTECAK-FGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHHHHhcc-cCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 455667887 999999999888 5555556678889999999999999999 999999999977653
No 227
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=86.92 E-value=0.53 Score=53.46 Aligned_cols=79 Identities=24% Similarity=0.375 Sum_probs=61.2
Q ss_pred cceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CC-CccCCeEEEEcc
Q 001613 548 SKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RF-VTIMGKEVEIKS 625 (1044)
Q Consensus 548 ~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~-~~i~Gr~i~v~~ 625 (1044)
.++|+|+|+..++..+++..|...--.... .++ -.-||+||.+.+..-|.+|++. ++ .++.|++++|..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g-~fl--------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSG-QFL--------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEH 72 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCc-cee--------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccc
Confidence 478999999999999999999741101111 111 1468999999999999999999 44 789999999999
Q ss_pred cCChhHHHHH
Q 001613 626 AVPKEVLFAE 635 (1044)
Q Consensus 626 A~~k~~~~~~ 635 (1044)
..++.+...+
T Consensus 73 sv~kkqrsrk 82 (584)
T KOG2193|consen 73 SVPKKQRSRK 82 (584)
T ss_pred hhhHHHHhhh
Confidence 9887765544
No 228
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=86.91 E-value=1.3 Score=53.40 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=65.9
Q ss_pred ccccceeccCCcccccCCCCCCccccCCCCcce-EEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q 001613 545 EFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIED-ARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVE 622 (1044)
Q Consensus 545 ~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~-~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~ 622 (1044)
+..--|||..||..+++......|.+ .-.|++ +.+..-+. ++.++-|||.|..++++.+|..- ..+.++.|.|+
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~-~~~Ved~I~lt~~P~---~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ir 507 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMG-AAAVEDFIELTRLPT---DLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIR 507 (944)
T ss_pred CccceEEeccCCccccccchhhhhhh-hhhhhheeEeccCCc---ccccchhhheeccccccchhhhcccccccCceEEE
Confidence 34556999999999999999999997 667777 55533332 36899999999999999888887 77889999999
Q ss_pred EcccCChh
Q 001613 623 IKSAVPKE 630 (1044)
Q Consensus 623 v~~A~~k~ 630 (1044)
|.....+.
T Consensus 508 v~si~~~~ 515 (944)
T KOG4307|consen 508 VDSIADYA 515 (944)
T ss_pred eechhhHH
Confidence 98765444
No 229
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=86.46 E-value=0.28 Score=40.47 Aligned_cols=51 Identities=31% Similarity=0.423 Sum_probs=38.0
Q ss_pred ceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHH
Q 001613 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAV 609 (1044)
Q Consensus 549 kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~ 609 (1044)
.|-|.|.+.+.. +.++.+|.+ ||+|.+..+. ...-+.||+|.++.+|++|+
T Consensus 3 wI~V~Gf~~~~~-~~vl~~F~~-fGeI~~~~~~--------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPDLA-EEVLEHFAS-FGEIVDIYVP--------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECchHH-HHHHHHHHh-cCCEEEEEcC--------CCCcEEEEEECCHHHHHhhC
Confidence 355556665544 344559997 9999998883 24568999999999999985
No 230
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=85.69 E-value=6.3 Score=40.88 Aligned_cols=135 Identities=12% Similarity=0.027 Sum_probs=93.2
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCchHHHHHHhcCCCcccccchHHHHHHHHhcCCeeeecCCCCCcHH
Q 001613 290 PPLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTAL 369 (1044)
Q Consensus 290 TpLh~Aa~~G~~eiVk~LL~~~gadvn~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~iVklLLe~GAdvn~~d~~G~TpL 369 (1044)
-.|..|+..+-+.|++.+=+. + ...-...++.+-.||+.. +.+||+|+-++=. . .+-.+..
T Consensus 48 CLl~HAVk~nmL~ILqkyke~----L--~~~~~~~q~LFElAC~~q--------kydiV~WI~qnL~---i--~~~~~iF 108 (192)
T PF03158_consen 48 CLLYHAVKYNMLSILQKYKED----L--ENERYLNQELFELACEEQ--------KYDIVKWIGQNLH---I--YNPEDIF 108 (192)
T ss_pred HHHHHHHHcCcHHHHHHHHHH----h--hcchhHHHHHHHHHHHHc--------cccHHHHHhhccC---C--CCchhhh
Confidence 467889999999999887664 1 111245678888999988 9999999954311 1 2233556
Q ss_pred HHHHHcCCHHHHH----HHHhcCCCCcccCCCC--CCcHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHHHcC
Q 001613 370 HIAAGSGNSQALE----DLIRKEPDCINLKTIM--METPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQD 443 (1044)
Q Consensus 370 h~Aa~~g~~eiVk----lLL~~gad~in~~d~~--G~TpLh~Aa~~g~~~iVklLL~~GAdin~~d~~G~TpLh~Aa~~g 443 (1044)
.+|....+.++.. +++++... -.-.|.. =..-|..|+..|.+..|...+++|.+++. +.|-.|++++
T Consensus 109 dIA~~~kDlsLyslGY~l~~~~~~~-~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~yn 181 (192)
T PF03158_consen 109 DIAFAKKDLSLYSLGYKLLFNRMMS-EHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYN 181 (192)
T ss_pred hhhhhccchhHHHHHHHHHHhhccc-ccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhh
Confidence 7888888877632 23333322 1011100 01246799999999999999999988864 8999999999
Q ss_pred hHHHHHH
Q 001613 444 MRFLLKA 450 (1044)
Q Consensus 444 ~~~Ll~~ 450 (1044)
++.||..
T Consensus 182 hRkIL~y 188 (192)
T PF03158_consen 182 HRKILDY 188 (192)
T ss_pred HHHHHHH
Confidence 9998863
No 231
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=85.63 E-value=1.3 Score=39.34 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=40.8
Q ss_pred chHHHHHHHcCCHHHHHHHHhCCCCCccccccccCCCCChHHHHHHHcCCHHHHHHHHHc
Q 001613 58 TKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAESHTARCVELLLKK 117 (1044)
Q Consensus 58 ~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~G~~eiVklLL~~ 117 (1044)
.+.|..|+..|+.|+++.+++.+ ..-...|..|+...+.+++++|++.
T Consensus 7 ~~tl~~Ai~GGN~eII~~c~~~~------------~~~~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 7 KKTLEYAIIGGNFEIINICLKKN------------KPDNDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh------------ccHHHHHHHHHHHhhHHHHHHHHHh
Confidence 56689999999999999999754 1224679999999999999999996
No 232
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=85.62 E-value=0.26 Score=60.69 Aligned_cols=81 Identities=19% Similarity=0.228 Sum_probs=71.4
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVE 622 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~ 622 (1044)
...+.++|+.|.|+..|.+.++..+.+ +|.+.+.+++..+.+ +++|-+||.|.++.++.++... +...+.-+.+.
T Consensus 733 ~~gK~~v~i~g~pf~gt~e~~k~l~~~-~gn~~~~~~vt~r~g---kpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~ 808 (881)
T KOG0128|consen 733 FFGKISVAISGPPFQGTKEELKSLASK-TGNVTSLRLVTVRAG---KPKGKARVDYNTEADASRKVASVDVAGKRENNGE 808 (881)
T ss_pred hhhhhhhheeCCCCCCchHHHHhhccc-cCCccccchhhhhcc---ccccceeccCCCcchhhhhcccchhhhhhhcCcc
Confidence 334778999999999999999999998 999999998887766 4999999999999999999998 87888888888
Q ss_pred EcccCC
Q 001613 623 IKSAVP 628 (1044)
Q Consensus 623 v~~A~~ 628 (1044)
|....|
T Consensus 809 v~vsnp 814 (881)
T KOG0128|consen 809 VQVSNP 814 (881)
T ss_pred ccccCC
Confidence 777655
No 233
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=85.44 E-value=1.1 Score=51.17 Aligned_cols=72 Identities=14% Similarity=0.238 Sum_probs=61.8
Q ss_pred cceeccCCcc-cccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEcc
Q 001613 548 SKIFVGGLPF-FLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIKS 625 (1044)
Q Consensus 548 ~kifVg~L~~-~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~~ 625 (1044)
..|.|.+|.. .+|.+.|-.+|.- ||.|..+.++..+.. -|.|.|.+...|+-|++. +|+.|.||+|+|..
T Consensus 298 ~vllvsnln~~~VT~d~LftlFgv-YGdVqRVkil~nkkd-------~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~ 369 (492)
T KOG1190|consen 298 VVLLVSNLNEEAVTPDVLFTLFGV-YGDVQRVKILYNKKD-------NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTL 369 (492)
T ss_pred eEEEEecCchhccchhHHHHHHhh-hcceEEEEeeecCCc-------ceeeeecchhHHHHHHHHhhcceecCceEEEee
Confidence 4456666544 6889999999996 999999999986543 589999999999999999 99999999999987
Q ss_pred cC
Q 001613 626 AV 627 (1044)
Q Consensus 626 A~ 627 (1044)
++
T Consensus 370 SK 371 (492)
T KOG1190|consen 370 SK 371 (492)
T ss_pred cc
Confidence 64
No 234
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=85.41 E-value=0.34 Score=55.32 Aligned_cols=77 Identities=16% Similarity=0.218 Sum_probs=63.0
Q ss_pred ccccccccc--cccceeccCCcccccCCCCCCccccCCCCcceEEEeee---cCCCCCCccc--------EEEEEeCCHH
Q 001613 537 CMIHASTQE--FKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEF---QTEKQSVSRG--------FGFVTFKHEK 603 (1044)
Q Consensus 537 tpLh~aa~~--~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d---~~~~~g~srG--------fgFV~F~~~e 603 (1044)
+|+..-..+ +.++|.+-+||.+-.-+.|.+.|.. +|.|..|+|..- +...+|.+++ +|||+|+..+
T Consensus 219 sPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~-~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~ 297 (484)
T KOG1855|consen 219 SPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGT-VGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVE 297 (484)
T ss_pred CCCCCccccccccceEEEecCCcchHHHHHHHHhhc-ccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhH
Confidence 444444433 7899999999999999999999998 999999999877 5555555554 6999999999
Q ss_pred HHHHHHHhCCC
Q 001613 604 SAAAAVQARFV 614 (1044)
Q Consensus 604 ~a~~A~~~~~~ 614 (1044)
.|.+|.+..+.
T Consensus 298 ~A~KA~e~~~~ 308 (484)
T KOG1855|consen 298 AARKARELLNP 308 (484)
T ss_pred HHHHHHHhhch
Confidence 99999998543
No 235
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=84.50 E-value=0.91 Score=48.11 Aligned_cols=76 Identities=26% Similarity=0.373 Sum_probs=63.8
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccC-CeEE
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIM-GKEV 621 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~-Gr~i 621 (1044)
......+|+-++|.+++.+.+...|.+ |....+++++.. -+|.+||+|.+...+..|... ++..|- ...+
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~q-f~g~keir~i~~-------~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m 214 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQ-FPGFKEIRLIPP-------RSGIAFVEFLSDRQASAAQQALQGFKITKKNTM 214 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhh-CcccceeEeccC-------CCceeEEecchhhhhHHHhhhhccceeccCceE
Confidence 445677999999999999999999998 999999998643 578999999999999999988 776665 7777
Q ss_pred EEcccC
Q 001613 622 EIKSAV 627 (1044)
Q Consensus 622 ~v~~A~ 627 (1044)
.|..|.
T Consensus 215 ~i~~a~ 220 (221)
T KOG4206|consen 215 QITFAK 220 (221)
T ss_pred EecccC
Confidence 776653
No 236
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=84.41 E-value=0.98 Score=50.46 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=48.6
Q ss_pred CCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEcc
Q 001613 562 DSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIKS 625 (1044)
Q Consensus 562 ~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~~ 625 (1044)
++|++.-++ ||.|..+.|. |+ ++.|-+-|.|.+.++|..|++. +|..++||.|.-..
T Consensus 291 edl~eec~K-~G~v~~vvv~-d~-----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i 348 (382)
T KOG1548|consen 291 EDLTEECEK-FGQVRKVVVY-DR-----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASI 348 (382)
T ss_pred HHHHHHHHH-hCCcceEEEe-cc-----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEE
Confidence 456666777 9999999884 32 5789999999999999999999 99999999998654
No 237
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=84.37 E-value=0.34 Score=54.36 Aligned_cols=78 Identities=21% Similarity=0.220 Sum_probs=60.9
Q ss_pred ceeccCCcccccCCCCCCccccC---CCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCeEEEEcc
Q 001613 549 KIFVGGLPFFLDSDSLGGYFEKH---FGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQARFVTIMGKEVEIKS 625 (1044)
Q Consensus 549 kifVg~L~~~~te~~Lr~~F~~~---fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~~~~~i~Gr~i~v~~ 625 (1044)
-|-..|||++.++.++.++|.+. -|.++++-++...++ |.-|=|||-|..+++|+.|+..+...|+-|-|++-+
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdg---rpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDG---RPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFR 239 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCC---CcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35668999999999999999531 134555555544333 699999999999999999999988888888888877
Q ss_pred cCCh
Q 001613 626 AVPK 629 (1044)
Q Consensus 626 A~~k 629 (1044)
+..-
T Consensus 240 STaa 243 (508)
T KOG1365|consen 240 STAA 243 (508)
T ss_pred HhHH
Confidence 6543
No 238
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=82.52 E-value=0.43 Score=42.86 Aligned_cols=67 Identities=19% Similarity=0.313 Sum_probs=43.1
Q ss_pred cceeccCCcccccCCCCCC----ccccCCC-CcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEE
Q 001613 548 SKIFVGGLPFFLDSDSLGG----YFEKHFG-PIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEV 621 (1044)
Q Consensus 548 ~kifVg~L~~~~te~~Lr~----~F~~~fG-~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i 621 (1044)
.-|+|.|||...+...++. ++.. +| .|..+ +.|-|.|.|.+++.|.+|... +|-.+-|++|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdN-CGGkVl~v------------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI 69 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDN-CGGKVLSV------------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKI 69 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHT-TT--EEE--------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhc-cCCEEEEE------------eCCEEEEEeCCHHHHHHHHHhhcccccccceE
Confidence 3578899998877655544 4444 54 33332 467899999999999999999 9999999999
Q ss_pred EEcccC
Q 001613 622 EIKSAV 627 (1044)
Q Consensus 622 ~v~~A~ 627 (1044)
.|++..
T Consensus 70 ~v~~~~ 75 (90)
T PF11608_consen 70 SVSFSP 75 (90)
T ss_dssp EEESS-
T ss_pred EEEEcC
Confidence 999873
No 239
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=82.15 E-value=1 Score=42.27 Aligned_cols=77 Identities=22% Similarity=0.223 Sum_probs=49.0
Q ss_pred cceeccCCcccccCCCCCCccccCCCCcceEE-EeeecCC----CCCCcccEEEEEeCCHHHHHHHHHhCCCccCCe-EE
Q 001613 548 SKIFVGGLPFFLDSDSLGGYFEKHFGPIEDAR-VAEFQTE----KQSVSRGFGFVTFKHEKSAAAAVQARFVTIMGK-EV 621 (1044)
Q Consensus 548 ~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~-v~~d~~~----~~g~srGfgFV~F~~~e~a~~A~~~~~~~i~Gr-~i 621 (1044)
.-|.|-|.|.. ....+.++|++ ||+|.+.. +.++..+ .......+--|+|+++.+|.+|+..||..+.|. .+
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~-~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSS-FGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHC-CS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHh-cceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 34667777776 34556678997 99988764 1111000 000245688999999999999999999999885 55
Q ss_pred EEccc
Q 001613 622 EIKSA 626 (1044)
Q Consensus 622 ~v~~A 626 (1044)
-|.+.
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 67766
No 240
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=80.49 E-value=0.32 Score=59.90 Aligned_cols=69 Identities=29% Similarity=0.367 Sum_probs=58.5
Q ss_pred ccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHhCCCccCC
Q 001613 547 KSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQARFVTIMG 618 (1044)
Q Consensus 547 ~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~~~~~i~G 618 (1044)
.-++|+.+|+..+.+.++...|.. +|.+..+.+.. ..++++.||+|||.|.+++++.+|+..+...+-|
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~-~~~~e~vqi~~--h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSP-SGTIEVVQIVI--HKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCc-cchhhhHHHHH--HhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 457999999999999999999998 99999888863 3344589999999999999999999985544444
No 241
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=77.85 E-value=3.5 Score=41.23 Aligned_cols=55 Identities=25% Similarity=0.389 Sum_probs=43.5
Q ss_pred CCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCeEEEEcccCC
Q 001613 563 SLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQARFVTIMGKEVEIKSAVP 628 (1044)
Q Consensus 563 ~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~~~~~i~Gr~i~v~~A~~ 628 (1044)
+|-+.|.+ ||++.-++++. +-=+|+|.+-+.|.+|+..+|.+++|+.+.|+.-.|
T Consensus 52 ~ll~~~~~-~GevvLvRfv~----------~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQ-YGEVVLVRFVG----------DTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHC-CS-ECEEEEET----------TCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE---
T ss_pred HHHHHHHh-CCceEEEEEeC----------CeEEEEECccHHHHHHHccCCcEECCEEEEEEeCCc
Confidence 45567887 99998888742 345899999999999999999999999999986544
No 242
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=77.72 E-value=0.63 Score=52.37 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=60.6
Q ss_pred cceeccCCcccccCCCCCCccccCCCCcce---EEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q 001613 548 SKIFVGGLPFFLDSDSLGGYFEKHFGPIED---ARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEI 623 (1044)
Q Consensus 548 ~kifVg~L~~~~te~~Lr~~F~~~fG~v~~---~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v 623 (1044)
.-|-..|||++.+-+++-++|.. |-.-.+ +.++.. +.|++.|-|||.|.++|+|.+|... +++.+.+|-|+|
T Consensus 281 dcvRLRGLPy~AtvEdIL~Flgd-Fa~~i~f~gVHmv~N---~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGD-FATDIRFQGVHMVLN---GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHH-HhhhcccceeEEEEc---CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEE
Confidence 34667899999999999999886 754333 444433 4568999999999999999999999 667777999999
Q ss_pred cccC
Q 001613 624 KSAV 627 (1044)
Q Consensus 624 ~~A~ 627 (1044)
-.+.
T Consensus 357 fp~S 360 (508)
T KOG1365|consen 357 FPCS 360 (508)
T ss_pred eecc
Confidence 7764
No 243
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=77.37 E-value=1.6 Score=44.61 Aligned_cols=69 Identities=22% Similarity=0.239 Sum_probs=56.2
Q ss_pred cccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCc--cCCeEEE
Q 001613 546 FKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVT--IMGKEVE 622 (1044)
Q Consensus 546 ~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~--i~Gr~i~ 622 (1044)
...+|.|.+||.+.++++|++++.+ -|.|.-..+.+ -|.|.|+|...|+++-|+.. +... -.|....
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmRe-aGdvCfadv~r---------Dg~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~y 183 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMRE-AGDVCFADVQR---------DGVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAY 183 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHh-hCCeeeeeeec---------ccceeeeeeehhhHHHHHHhhccccccCcCcEee
Confidence 4567999999999999999999998 99999888844 46899999999999999998 4433 3555544
Q ss_pred Ec
Q 001613 623 IK 624 (1044)
Q Consensus 623 v~ 624 (1044)
+.
T Consensus 184 ir 185 (241)
T KOG0105|consen 184 IR 185 (241)
T ss_pred EE
Confidence 43
No 244
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=74.45 E-value=4.6 Score=35.82 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=39.7
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q 001613 367 TALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRW 421 (1044)
Q Consensus 367 TpLh~Aa~~g~~eiVklLL~~gad~in~~d~~G~TpLh~Aa~~g~~~iVklLL~~ 421 (1044)
.-+..|+..|+.|+++.+++.+.. + ...|..|+...+.+++++|++.
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~~~~--~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKKNKP--D------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhcc--H------HHHHHHHHHHhhHHHHHHHHHh
Confidence 467899999999999999976532 1 4679999999999999999985
No 245
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=73.76 E-value=0.58 Score=50.41 Aligned_cols=60 Identities=22% Similarity=0.291 Sum_probs=47.7
Q ss_pred CCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEccc
Q 001613 564 LGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIKSA 626 (1044)
Q Consensus 564 Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~~A 626 (1044)
+-..|+..||+|+++.|-..... +-+|-.+|.|..+++|++|++. |+.-+.|++|.....
T Consensus 85 ~f~E~~~kygEiee~~Vc~Nl~~---hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDNLGD---HLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHhhhhhhhhhhcccch---hhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 33344523999999977543322 5799999999999999999999 999999999987764
No 246
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=72.10 E-value=3.6 Score=49.85 Aligned_cols=75 Identities=16% Similarity=0.269 Sum_probs=61.6
Q ss_pred ccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEc
Q 001613 547 KSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIK 624 (1044)
Q Consensus 547 ~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~ 624 (1044)
.+-|-+.|.|+.++-+++.++|.. |-.+-.-.+++-.+. |..-|-+-|-|++.++|.+|... ++..|..|.|.+.
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~d-Y~~~p~sI~~r~nd~--G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFND-YEPDPNSIRIRRNDD--GVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcc-cccCCCceeEeecCC--CCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 346778999999999999999997 866654433333333 47999999999999999999999 9999999999875
No 247
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=67.15 E-value=2.6 Score=45.54 Aligned_cols=75 Identities=27% Similarity=0.307 Sum_probs=62.1
Q ss_pred cceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CC----CccCCeEEE
Q 001613 548 SKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RF----VTIMGKEVE 622 (1044)
Q Consensus 548 ~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~----~~i~Gr~i~ 622 (1044)
..|+|-||+..++.+.+.+.|+. ||.|+...+.-|... ++-|-|+|.|...-.+.+|+.. .. .+..|+++-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~-fg~~e~av~~vD~r~---k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~ 107 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRR-FGPIERAVAKVDDRG---KPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVG 107 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhh-cCccchheeeecccc---cccccchhhhhcchhHHHHHHHhccCccccCCCCCccC
Confidence 56899999999999999999998 999999888777544 5889999999999999999887 22 456777776
Q ss_pred Eccc
Q 001613 623 IKSA 626 (1044)
Q Consensus 623 v~~A 626 (1044)
|...
T Consensus 108 VeP~ 111 (275)
T KOG0115|consen 108 VEPM 111 (275)
T ss_pred CChh
Confidence 6543
No 248
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=65.38 E-value=12 Score=42.51 Aligned_cols=77 Identities=17% Similarity=0.249 Sum_probs=62.7
Q ss_pred cccccceeccCCccc-ccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEE
Q 001613 544 QEFKSKIFVGGLPFF-LDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEV 621 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~-~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i 621 (1044)
..+..-+.|-||... ++-+.|-..|-. ||.|+.+.+|+.+ -|-|.|+..+..++++|+.- |+..+-|.+|
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~Cl-YGNV~rvkFmkTk-------~gtamVemgd~~aver~v~hLnn~~lfG~kl 355 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCL-YGNVERVKFMKTK-------PGTAMVEMGDAYAVERAVTHLNNIPLFGGKL 355 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhh-cCceeeEEEeecc-------cceeEEEcCcHHHHHHHHHHhccCccccceE
Confidence 444556677777765 445777888997 9999999999753 46799999999999999999 9999999999
Q ss_pred EEcccCC
Q 001613 622 EIKSAVP 628 (1044)
Q Consensus 622 ~v~~A~~ 628 (1044)
.|..+.+
T Consensus 356 ~v~~SkQ 362 (494)
T KOG1456|consen 356 NVCVSKQ 362 (494)
T ss_pred EEeeccc
Confidence 9987653
No 249
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.10 E-value=3.5 Score=46.33 Aligned_cols=46 Identities=28% Similarity=0.584 Sum_probs=33.5
Q ss_pred ceeecccccc------cccccCcccchhhcchhhHHHHHhhhcCcceeeeecccccc
Q 001613 974 KICFRCKKEE------MQWANNPCQHLLWCNVCKRETIEAAAGSEHLCVICDKKVED 1024 (1044)
Q Consensus 974 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1024 (1044)
-+|..|+... -+-.| ||.|.+ |.+|-..+.... ...|.+|.+.+..
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~-~CGH~~-C~sCv~~l~~~~---~~~CP~C~~~lrk 55 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVN-VCGHTL-CESCVDLLFVRG---SGSCPECDTPLRK 55 (309)
T ss_pred CCCCcCCCCCccCcccccccC-CCCCcc-cHHHHHHHhcCC---CCCCCCCCCccch
Confidence 4799998742 23445 999986 899998886432 3489999887654
No 250
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=61.06 E-value=6.6 Score=44.12 Aligned_cols=82 Identities=21% Similarity=0.175 Sum_probs=68.6
Q ss_pred cccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHhCC-CccCCeEEEEc
Q 001613 546 FKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQARF-VTIMGKEVEIK 624 (1044)
Q Consensus 546 ~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~~~-~~i~Gr~i~v~ 624 (1044)
...+.|+|.+.+.+.+.+....+.. +|.+..+.+...+... .++||+.+.|+..+.+..|++..+ ..+.++.+...
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~-~g~~~~~~~S~~~~~~--~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~d 163 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSE-AGLRVDARSSSLEDSL--SSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKD 163 (285)
T ss_pred ccccccccccccchhhccccccchh-hcCcccchhhhhcccc--ccccceeeccccHHHHHHHHHhhhccccccccccCc
Confidence 4678999999999999977778886 9988888876665555 799999999999999999999944 68888888887
Q ss_pred ccCChh
Q 001613 625 SAVPKE 630 (1044)
Q Consensus 625 ~A~~k~ 630 (1044)
....+.
T Consensus 164 l~~~~~ 169 (285)
T KOG4210|consen 164 LNTRRG 169 (285)
T ss_pred cccccc
Confidence 766543
No 251
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=60.85 E-value=15 Score=43.87 Aligned_cols=82 Identities=16% Similarity=0.097 Sum_probs=63.4
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCcc----CC
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTI----MG 618 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i----~G 618 (1044)
+....++.+.+++..-|-..|.+.-++..|.=+-+.+..|...+ ...|||||.|.+.+++..+.++ +|+.+ ..
T Consensus 385 e~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nk--cNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~ 462 (549)
T KOG4660|consen 385 ECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNK--CNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSE 462 (549)
T ss_pred cCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccc--cccceeEEeecCHHHHHHHHHHHcCCchhhhcce
Confidence 55667788888888777777666665557777778888887666 6899999999999999999999 88653 34
Q ss_pred eEEEEcccC
Q 001613 619 KEVEIKSAV 627 (1044)
Q Consensus 619 r~i~v~~A~ 627 (1044)
|..++.+|.
T Consensus 463 Kia~itYAr 471 (549)
T KOG4660|consen 463 KIASITYAR 471 (549)
T ss_pred eeeeeehhh
Confidence 555677774
No 252
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=60.38 E-value=3.6 Score=43.58 Aligned_cols=30 Identities=37% Similarity=0.811 Sum_probs=24.6
Q ss_pred chhhcchhhHH------HHHhhhcCcceeeeecccc
Q 001613 993 HLLWCNVCKRE------TIEAAAGSEHLCVICDKKV 1022 (1044)
Q Consensus 993 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 1022 (1044)
.+-||--|.++ .||---.-|+||-||-||+
T Consensus 9 ~kpwcwycnrefddekiliqhqkakhfkchichkkl 44 (341)
T KOG2893|consen 9 DKPWCWYCNREFDDEKILIQHQKAKHFKCHICHKKL 44 (341)
T ss_pred CCceeeecccccchhhhhhhhhhhccceeeeehhhh
Confidence 45688888775 5788888899999999985
No 253
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=57.42 E-value=11 Score=43.19 Aligned_cols=76 Identities=11% Similarity=0.083 Sum_probs=59.4
Q ss_pred cccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCe-EEEE
Q 001613 546 FKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGK-EVEI 623 (1044)
Q Consensus 546 ~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr-~i~v 623 (1044)
...++-..++|.++++++++..|.+ -|...+...... +.|-++.+.+.+.|+|..|+.. +.+.+++. .++|
T Consensus 413 psatlHlsnip~svsee~lk~~f~~-~g~~vkafkff~------kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRv 485 (492)
T KOG1190|consen 413 PSATLHLSNIPPSVSEEDLKNLFQE-PGGQVKAFKFFQ------KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRV 485 (492)
T ss_pred chhheeeccCCcccchhHHHHhhhc-CCceEEeeeecC------CCcceeecccCChhHhhhhccccccccCCCCceEEE
Confidence 3456778899999999999999997 665544443222 4677999999999999999998 77777665 7888
Q ss_pred cccCC
Q 001613 624 KSAVP 628 (1044)
Q Consensus 624 ~~A~~ 628 (1044)
+++.+
T Consensus 486 SFSks 490 (492)
T KOG1190|consen 486 SFSKS 490 (492)
T ss_pred Eeecc
Confidence 87653
No 254
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=56.70 E-value=4.1 Score=47.51 Aligned_cols=61 Identities=23% Similarity=0.283 Sum_probs=51.7
Q ss_pred cCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCeEEEEcccCCh
Q 001613 560 DSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQARFVTIMGKEVEIKSAVPK 629 (1044)
Q Consensus 560 te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~~~~~i~Gr~i~v~~A~~k 629 (1044)
+-++|..+|.+ ||+|..|.|- .. ---|.|||.+..+|-.|-...+..|++|.|+|.|-.+.
T Consensus 386 t~a~ln~hfA~-fG~i~n~qv~--~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 386 TIADLNPHFAQ-FGEIENIQVD--YS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hHhhhhhhhhh-cCcccccccc--Cc------hhhheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 45788999998 9999999882 22 23578999999999999888999999999999998763
No 255
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=55.73 E-value=11 Score=41.39 Aligned_cols=64 Identities=22% Similarity=0.154 Sum_probs=48.1
Q ss_pred CCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEccc
Q 001613 561 SDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIKSA 626 (1044)
Q Consensus 561 e~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~~A 626 (1044)
+++.++..++ ||.|..|.|.-++.-- -.-----||+|+..+.|.+|+-. ||..++||.+.-.+-
T Consensus 300 ede~keEceK-yg~V~~viifeip~~p-~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEK-YGKVGNVIIFEIPSQP-EDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHh-hcceeeEEEEecCCCc-cchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 4556777787 9999988876653211 01223469999999999999998 999999999876543
No 256
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=55.50 E-value=5.6 Score=43.98 Aligned_cols=50 Identities=10% Similarity=-0.069 Sum_probs=41.8
Q ss_pred cceeecccccccccccCcccchhhcchhhHHHHHhhhcCcceeeeecccccceecc
Q 001613 973 QKICFRCKKEEMQWANNPCQHLLWCNVCKRETIEAAAGSEHLCVICDKKVEDIMLI 1028 (1044)
Q Consensus 973 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1028 (1044)
.-+||-|+-..+-=+--||.|.|.|..|.- +...-.|.+||-.|-..|+|
T Consensus 343 ~~~~~~~~~~~~st~~~~~~~n~~~~~~a~------~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 343 SLKGTSAGFGLLSTIWSGGNMNLSPGSLAS------ASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred hcccccccCceeeeEeecCCcccChhhhhh------cccCCccccccccceeeeec
Confidence 346999999999888899999999999965 22346799999999888776
No 257
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=51.22 E-value=10 Score=47.71 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=58.8
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVE 622 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~ 622 (1044)
....+++|+|+++..+++.+++..|.. +|.|.+|.+=.-+ -++---||||.|.+...+-.|... .+..|.--.++
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e-~gkve~VDiKtP~---~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r 444 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDE-SGKVEEVDIKTPH---IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR 444 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhh-hccccccccccCC---CCcccchhhhhhhccccCcccchhhcCCccccCccc
Confidence 335789999999999999999999998 9999999883221 224567999999999988888877 55544333433
Q ss_pred Ec
Q 001613 623 IK 624 (1044)
Q Consensus 623 v~ 624 (1044)
+.
T Consensus 445 ~g 446 (975)
T KOG0112|consen 445 IG 446 (975)
T ss_pred cc
Confidence 33
No 258
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=47.88 E-value=7.3 Score=48.87 Aligned_cols=76 Identities=21% Similarity=0.387 Sum_probs=65.0
Q ss_pred ccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCC--eEE
Q 001613 545 EFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMG--KEV 621 (1044)
Q Consensus 545 ~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~G--r~i 621 (1044)
...+.+|+|++.....-..+...|.. ||.|..+.+ + +-.-|++|.|++...+..|+.. .+.-++| +++
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~-fGpir~Idy--~------hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~ 523 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDR-FGPIRIIDY--R------HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRL 523 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhc-cCcceeeec--c------cCCcceeeecccCccchhhHHHHhcCcCCCCCccc
Confidence 34678999999999999999999997 999999777 2 3456999999999999999999 8888876 678
Q ss_pred EEcccCCh
Q 001613 622 EIKSAVPK 629 (1044)
Q Consensus 622 ~v~~A~~k 629 (1044)
.|+.|.+-
T Consensus 524 rvdla~~~ 531 (975)
T KOG0112|consen 524 RVDLASPP 531 (975)
T ss_pred ccccccCC
Confidence 89888654
No 259
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.75 E-value=12 Score=42.66 Aligned_cols=49 Identities=29% Similarity=0.631 Sum_probs=41.7
Q ss_pred cceeecccccccccccCcccchhhcchhhHHHHHhhhcCcceeeeecccccce
Q 001613 973 QKICFRCKKEEMQWANNPCQHLLWCNVCKRETIEAAAGSEHLCVICDKKVEDI 1025 (1044)
Q Consensus 973 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1025 (1044)
.+.|--|--+.-.|+=-||+|+==|+.|-...- -.+-+|.||-.-|+..
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr----~q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR----YQTNNCPICRQPIEEL 338 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHH----HhhcCCCccccchHhh
Confidence 457999999999999999999999999987665 3467999999887754
No 260
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=40.50 E-value=13 Score=42.60 Aligned_cols=77 Identities=18% Similarity=0.149 Sum_probs=58.1
Q ss_pred ceeccCCcccccCCCCCCccccCCCCcceEEEeeec-CCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEccc
Q 001613 549 KIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQ-TEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIKSA 626 (1044)
Q Consensus 549 kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~-~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~~A 626 (1044)
-|-|.|+..+++.++++.+|.. .|+|.++.|+-.. +..-.-...-+||.|.+...+..|-.. |...|+--.|.+-.+
T Consensus 9 vIqvanispsat~dqm~tlFg~-lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGN-LGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhh-ccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 5788999999999999999996 9999999997532 222123567899999999999999888 555555444444433
No 261
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=39.59 E-value=55 Score=32.71 Aligned_cols=71 Identities=27% Similarity=0.207 Sum_probs=51.0
Q ss_pred cccceeccCCccccc----CCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCeEE
Q 001613 546 FKSKIFVGGLPFFLD----SDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQARFVTIMGKEV 621 (1044)
Q Consensus 546 ~~~kifVg~L~~~~t----e~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~~~~~i~Gr~i 621 (1044)
...+|.|.=|...+. -..+...++. ||+|.++... .|--+.|.|.+..+|-+|+.+-....-|..+
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~-fGpI~SVT~c---------GrqsavVvF~d~~SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSV-FGPIQSVTLC---------GRQSAVVVFKDITSACKAVSAFQSRAPGTMF 154 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHh-cCCcceeeec---------CCceEEEEehhhHHHHHHHHhhcCCCCCceE
Confidence 344555544433332 2334445666 9999999883 5667899999999999999995558888888
Q ss_pred EEccc
Q 001613 622 EIKSA 626 (1044)
Q Consensus 622 ~v~~A 626 (1044)
.+.|-
T Consensus 155 qCsWq 159 (166)
T PF15023_consen 155 QCSWQ 159 (166)
T ss_pred Eeecc
Confidence 88875
No 262
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=39.55 E-value=12 Score=44.84 Aligned_cols=79 Identities=16% Similarity=0.144 Sum_probs=63.8
Q ss_pred cccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCcc---CCe
Q 001613 544 QEFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTI---MGK 619 (1044)
Q Consensus 544 ~~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i---~Gr 619 (1044)
.....-|+|.||-...|..+|++++.+.-|.|++..+ |+ -|.-+||.|.+.++|.+...+ +|..+ ++|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH------hhcceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 3344558999999999999999999965778888844 53 455789999999999999999 88876 788
Q ss_pred EEEEcccCChh
Q 001613 620 EVEIKSAVPKE 630 (1044)
Q Consensus 620 ~i~v~~A~~k~ 630 (1044)
.|.+.++..-+
T Consensus 513 ~L~adf~~~de 523 (718)
T KOG2416|consen 513 HLIADFVRADE 523 (718)
T ss_pred eeEeeecchhH
Confidence 89888875443
No 263
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.25 E-value=1.3e+02 Score=38.34 Aligned_cols=132 Identities=20% Similarity=0.221 Sum_probs=79.1
Q ss_pred CCChhHHHHHHHHHhcCHHHHHHHHHhhccccccccccccccccchHHHHHHHcCCHHHHHHHHhCCCCCccccccccCC
Q 001613 14 VTDLETTLIINSLLEDDKKQLINVSKRHFIDNSLDNADQQTAIVTKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEES 93 (1044)
Q Consensus 14 ~~d~e~~~ll~AIl~dD~~~L~~li~~~~~~~~l~~~~~~~~~~~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~ 93 (1044)
.+..|. .+=.|+++.+.++++.+++...- .|. .++.||-+.|....|.--.+|.
T Consensus 593 IDptEy-~FKlALi~k~ydeVl~lI~ns~L------------vGq------------aiIaYLqKkgypeiAL~FVkD~- 646 (1202)
T KOG0292|consen 593 IDPTEY-RFKLALLNKKYDEVLHLIKNSNL------------VGQ------------AIIAYLQKKGYPEIALHFVKDE- 646 (1202)
T ss_pred echHHH-HHHHHHHhhhhHHHHHHHHhcCc------------ccH------------HHHHHHHhcCCcceeeeeecCc-
Confidence 333444 55668888888888777763311 122 3445555555332222223333
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCchHHHHHHhCCCcceecCCCCCchhHH-HHHHhcCCHHHHHHH
Q 001613 94 SGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLLPLELSLSSSRMDVIWNPDEYSVEDL-VVILGQKNLTTVKLL 172 (1044)
Q Consensus 94 ~G~TpLH~Aa~~G~~eiVklLL~~GAdvn~~d~~G~T~lpLh~Aa~~g~~eIv~~~~~~~~t~L-~~Ai~~g~~eivklL 172 (1044)
+|=+.+|...|++++.--.-..+-|.+. ...| ..|+.+||..|++.-
T Consensus 647 --~tRF~LaLe~gnle~ale~akkldd~d~------------------------------w~rLge~Al~qgn~~IaEm~ 694 (1202)
T KOG0292|consen 647 --RTRFELALECGNLEVALEAAKKLDDKDV------------------------------WERLGEEALRQGNHQIAEMC 694 (1202)
T ss_pred --chheeeehhcCCHHHHHHHHHhcCcHHH------------------------------HHHHHHHHHHhcchHHHHHH
Confidence 5667778888888876554444332221 1112 237788999999999
Q ss_pred HHcCCCcchHHHHhhhcCcHHHHHHHHHHHh
Q 001613 173 SQKTKELDEVAYANAVGGRIVALAALLIVAA 203 (1044)
Q Consensus 173 l~~gadi~~~~~~~a~~g~~~~l~~ll~~a~ 203 (1044)
.++..+.+.+.+.+...|+..-+..++..+.
T Consensus 695 yQ~~knfekLsfLYliTgn~eKL~Km~~iae 725 (1202)
T KOG0292|consen 695 YQRTKNFEKLSFLYLITGNLEKLSKMMKIAE 725 (1202)
T ss_pred HHHhhhhhheeEEEEEeCCHHHHHHHHHHHH
Confidence 9998888877666666777766666655443
No 264
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=34.73 E-value=78 Score=36.28 Aligned_cols=70 Identities=17% Similarity=0.062 Sum_probs=53.8
Q ss_pred cCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCcc--CCeEEEEcccCCh
Q 001613 553 GGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTI--MGKEVEIKSAVPK 629 (1044)
Q Consensus 553 g~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i--~Gr~i~v~~A~~k 629 (1044)
-|--+.+|-+-|....-. .|.|..+.|++. .+ ==|.|+|++.+.|++|..+ ||..| +=-.++|+.|+|-
T Consensus 128 lNp~YpItvDVly~Icnp-~GkVlRIvIfkk-ng------VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 128 LNPQYPITVDVLYTICNP-QGKVLRIVIFKK-NG------VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred ecCccccchhhhhhhcCC-CCceEEEEEEec-cc------eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 445556777778777777 899999988753 22 2489999999999999999 88665 3467888888874
Q ss_pred h
Q 001613 630 E 630 (1044)
Q Consensus 630 ~ 630 (1044)
.
T Consensus 200 r 200 (494)
T KOG1456|consen 200 R 200 (494)
T ss_pred e
Confidence 3
No 265
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.43 E-value=18 Score=37.24 Aligned_cols=51 Identities=24% Similarity=0.701 Sum_probs=33.4
Q ss_pred hhhhhcceeecccccccccccCcccchhhcchhhHHHHHhhhcCcceeeeecccccc
Q 001613 968 NSCFKQKICFRCKKEEMQWANNPCQHLLWCNVCKRETIEAAAGSEHLCVICDKKVED 1024 (1044)
Q Consensus 968 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1024 (1044)
+.|++=++|--=-.+.+.- -.-|.|. .|.-|-..++.. -|+|.+|.+||..
T Consensus 129 ~~~~~CPiCl~~~sek~~v-sTkCGHv-FC~~Cik~alk~----~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPV-STKCGHV-FCSQCIKDALKN----TNKCPTCRKKITH 179 (187)
T ss_pred ccccCCCceecchhhcccc-ccccchh-HHHHHHHHHHHh----CCCCCCcccccch
Confidence 3455555554444455543 2459995 688887776665 5899999998753
No 266
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=33.34 E-value=24 Score=25.51 Aligned_cols=26 Identities=35% Similarity=0.984 Sum_probs=19.5
Q ss_pred CcccchhhcchhhHHHHHhhhcCcceeeee
Q 001613 989 NPCQHLLWCNVCKRETIEAAAGSEHLCVIC 1018 (1044)
Q Consensus 989 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1018 (1044)
.||.|. .|..|....++ ...-+|.+|
T Consensus 14 ~~C~H~-~c~~C~~~~~~---~~~~~CP~C 39 (39)
T smart00184 14 LPCGHT-FCRSCIRKWLK---SGNNTCPIC 39 (39)
T ss_pred ecCCCh-HHHHHHHHHHH---hCcCCCCCC
Confidence 479999 89999988877 334457665
No 267
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=33.21 E-value=1.1e+03 Score=32.27 Aligned_cols=28 Identities=14% Similarity=0.086 Sum_probs=22.1
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCcchHH
Q 001613 156 DLVVILGQKNLTTVKLLSQKTKELDEVA 183 (1044)
Q Consensus 156 ~L~~Ai~~g~~eivklLl~~gadi~~~~ 183 (1044)
++..|......+.|++|+++|.++....
T Consensus 428 aM~dALv~DR~dFV~LLlEnGv~m~~FL 455 (1381)
T KOG3614|consen 428 AMDDALVLDRPDFVRLLLENGVSMQKFL 455 (1381)
T ss_pred HHHHHHHhCcHHHHHHHHHcCcchhhhc
Confidence 3667888888999999999998876543
No 268
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=32.27 E-value=43 Score=37.31 Aligned_cols=58 Identities=14% Similarity=0.228 Sum_probs=45.5
Q ss_pred CCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCeE-EEEcccCChh
Q 001613 564 LGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQARFVTIMGKE-VEIKSAVPKE 630 (1044)
Q Consensus 564 Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~~~~~i~Gr~-i~v~~A~~k~ 630 (1044)
+-.+|++ +|+|.+..-. +.+ -|=.|.|.+..+|.+|+..+|+.|+|.. |-|+....|.
T Consensus 213 vL~~F~~-cG~Vvkhv~~--~ng------NwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 213 VLNLFSR-CGEVVKHVTP--SNG------NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred HHHHHHh-hCeeeeeecC--CCC------ceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCHH
Confidence 3457887 9998876542 333 3899999999999999999999998875 5687777665
No 269
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=30.27 E-value=45 Score=34.78 Aligned_cols=82 Identities=9% Similarity=-0.039 Sum_probs=47.1
Q ss_pred cccceeccCCcccccCCCCCCccccCCCCc---ceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCcc-CC--
Q 001613 546 FKSKIFVGGLPFFLDSDSLGGYFEKHFGPI---EDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTI-MG-- 618 (1044)
Q Consensus 546 ~~~kifVg~L~~~~te~~Lr~~F~~~fG~v---~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i-~G-- 618 (1044)
...||.|..||..++++++.+.+...++.- ..+.............-.-|||.|.+.+++..-... +|+.+ +.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 456999999999999999999777535544 223211222221112344689999999999999888 88554 22
Q ss_pred --eEEEEcccC
Q 001613 619 --KEVEIKSAV 627 (1044)
Q Consensus 619 --r~i~v~~A~ 627 (1044)
-+..|..|.
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 234555664
No 270
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=29.08 E-value=35 Score=25.68 Aligned_cols=30 Identities=23% Similarity=0.788 Sum_probs=22.7
Q ss_pred cCcccchhhcchhhHHHHHhhhcCcceeeeeccc
Q 001613 988 NNPCQHLLWCNVCKRETIEAAAGSEHLCVICDKK 1021 (1044)
Q Consensus 988 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1021 (1044)
=.||.|. .|..|-...++. ..-+|.+|...
T Consensus 15 ~~~C~H~-~c~~C~~~~~~~---~~~~Cp~C~~~ 44 (45)
T cd00162 15 LLPCGHV-FCRSCIDKWLKS---GKNTCPLCRTP 44 (45)
T ss_pred ecCCCCh-hcHHHHHHHHHh---CcCCCCCCCCc
Confidence 3469998 799999887765 44569888764
No 271
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=28.34 E-value=13 Score=45.34 Aligned_cols=69 Identities=16% Similarity=0.286 Sum_probs=58.9
Q ss_pred ccccceeccCCcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q 001613 545 EFKSKIFVGGLPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEI 623 (1044)
Q Consensus 545 ~~~~kifVg~L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v 623 (1044)
....++|||++...+..+-++..... .|.|.++..+. |||..|..+....+|+.. ....++|..+.+
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~-~g~v~s~kr~~-----------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAK-SGFVPSWKRDK-----------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhh-CCcchhhhhhh-----------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 34678999999999999999998887 89988776531 999999999999999999 778898888766
Q ss_pred cc
Q 001613 624 KS 625 (1044)
Q Consensus 624 ~~ 625 (1044)
..
T Consensus 106 ~~ 107 (668)
T KOG2253|consen 106 NV 107 (668)
T ss_pred cc
Confidence 54
No 272
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=27.59 E-value=24 Score=37.52 Aligned_cols=72 Identities=25% Similarity=0.365 Sum_probs=59.3
Q ss_pred cccccceeccC----CcccccCCCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCccCC
Q 001613 544 QEFKSKIFVGG----LPFFLDSDSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-RFVTIMG 618 (1044)
Q Consensus 544 ~~~~~kifVg~----L~~~~te~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~~~~i~G 618 (1044)
++...+++.|+ |...++++.+...|++ -|.++.+++..+++ |+.|-|+||++....+.-.++.. .+.+.--
T Consensus 77 ~e~q~~~r~G~shapld~r~~~ei~~~v~s~-a~p~~~~R~~~~~d---~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~ 152 (267)
T KOG4454|consen 77 DEEQRTLRCGNSHAPLDERVTEEILYEVFSQ-AGPIEGVRIPTDND---GRNRNFGFVTYQRLCAVPFALDLYQGLELFQ 152 (267)
T ss_pred chhhcccccCCCcchhhhhcchhhheeeecc-cCCCCCcccccccc---CCccCccchhhhhhhcCcHHhhhhcccCcCC
Confidence 56677888888 8899999999999998 99999999977766 47999999999888888888776 6554433
Q ss_pred e
Q 001613 619 K 619 (1044)
Q Consensus 619 r 619 (1044)
+
T Consensus 153 ~ 153 (267)
T KOG4454|consen 153 K 153 (267)
T ss_pred C
Confidence 3
No 273
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=27.01 E-value=61 Score=34.03 Aligned_cols=57 Identities=21% Similarity=0.130 Sum_probs=42.0
Q ss_pred CCCCCccccCCCCcceEEEeeecCCCCCCcccEEEEEeCCHHHHHHHHHh-C--CCccCCeEEEEcccC
Q 001613 562 DSLGGYFEKHFGPIEDARVAEFQTEKQSVSRGFGFVTFKHEKSAAAAVQA-R--FVTIMGKEVEIKSAV 627 (1044)
Q Consensus 562 ~~Lr~~F~~~fG~v~~~~v~~d~~~~~g~srGfgFV~F~~~e~a~~A~~~-~--~~~i~Gr~i~v~~A~ 627 (1044)
..|+++|.. |+.+.....+ ++-+--.|.|.+.++|.+|... + +..+.|+.+++-++.
T Consensus 10 ~~l~~l~~~-~~~~~~~~~L--------~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 10 AELEELFST-YDPPVQFSPL--------KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp HHHHHHHHT-T-SS-EEEEE--------TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred HHHHHHHHh-cCCceEEEEc--------CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 456778887 9988887775 4566678999999999999999 7 889999999998874
No 274
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=26.39 E-value=21 Score=29.91 Aligned_cols=34 Identities=32% Similarity=0.817 Sum_probs=21.8
Q ss_pred hcchhhHHHHHhhhcCcceeeeecccccceeccCCCCCCCCCCCCCC
Q 001613 996 WCNVCKRETIEAAAGSEHLCVICDKKVEDIMLISNPEEFPPLSPSDT 1042 (1044)
Q Consensus 996 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1044)
-|..|..-++ .-.|.+|+..... +-| |+|||.|.
T Consensus 7 ~C~~CgvYTL------k~~CP~CG~~t~~----~~P---~rfSp~D~ 40 (56)
T PRK13130 7 KCPKCGVYTL------KEICPVCGGKTKN----PHP---PRFSPEDK 40 (56)
T ss_pred ECCCCCCEEc------cccCcCCCCCCCC----CCC---CCCCCCCc
Confidence 3667766554 5679999987543 233 56777775
No 275
>PF14369 zf-RING_3: zinc-finger
Probab=26.03 E-value=11 Score=28.29 Aligned_cols=26 Identities=27% Similarity=0.726 Sum_probs=19.5
Q ss_pred hhcchhhHHHHHhhhcCcce-eeeecc
Q 001613 995 LWCNVCKRETIEAAAGSEHL-CVICDK 1020 (1044)
Q Consensus 995 ~~~~~~~~~~~~~~~~~~~~-~~~~~~ 1020 (1044)
.||-.|.+.+-.+.....-. |..|+-
T Consensus 3 ywCh~C~~~V~~~~~~~~~~~CP~C~~ 29 (35)
T PF14369_consen 3 YWCHQCNRFVRIAPSPDSDVACPRCHG 29 (35)
T ss_pred EeCccCCCEeEeCcCCCCCcCCcCCCC
Confidence 59999998887665555555 999974
No 276
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=25.36 E-value=23 Score=29.75 Aligned_cols=32 Identities=34% Similarity=0.904 Sum_probs=20.3
Q ss_pred cchhhHHHHHhhhcCcceeeeecccccceeccCCCCCCCCCCCCC
Q 001613 997 CNVCKRETIEAAAGSEHLCVICDKKVEDIMLISNPEEFPPLSPSD 1041 (1044)
Q Consensus 997 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1044)
|..|.+-|. .-+|.+|+-++. ++-| |.|||.|
T Consensus 8 C~~cg~YTL------ke~Cp~CG~~t~----~~~P---prFSPeD 39 (59)
T COG2260 8 CPKCGRYTL------KEKCPVCGGDTK----VPHP---PRFSPED 39 (59)
T ss_pred CcCCCceee------cccCCCCCCccc----cCCC---CCCCccc
Confidence 555655443 368999998764 4445 4566666
No 277
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=24.26 E-value=19 Score=29.80 Aligned_cols=29 Identities=34% Similarity=0.722 Sum_probs=21.3
Q ss_pred ceeecccccc-------cccccCcccchhhcchhhHHHHH
Q 001613 974 KICFRCKKEE-------MQWANNPCQHLLWCNVCKRETIE 1006 (1044)
Q Consensus 974 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1044)
-.|..|+..+ ----||| |.|..||+|++-
T Consensus 5 i~CP~CgnKTR~kir~DT~LkNfP----lyCpKCK~EtlI 40 (55)
T PF14205_consen 5 ILCPICGNKTRLKIREDTVLKNFP----LYCPKCKQETLI 40 (55)
T ss_pred EECCCCCCccceeeecCceecccc----ccCCCCCceEEE
Confidence 3689998333 3456898 899999998753
No 278
>COG2920 DsrC Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]
Probab=23.91 E-value=17 Score=33.88 Aligned_cols=35 Identities=23% Similarity=0.201 Sum_probs=27.2
Q ss_pred CCCCCchhHHHHhhcCC----------ceeeeeeccchhhhhhhhhc
Q 001613 937 PRPPEDHLVLRWLKGHN----------NSLFLREYDFSHEYNSCFKQ 973 (1044)
Q Consensus 937 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 973 (1044)
.+.|-.-.|-||||+.- -|.|||+ ||++|++|-.-
T Consensus 21 ~~~dW~E~vAe~lA~~e~i~LT~eHWevv~fvR~--fy~ef~tsPai 65 (111)
T COG2920 21 DSEDWSEKVAEALAEREGIELTEEHWEVVRFVRE--FYEEFNTSPAI 65 (111)
T ss_pred ChhhhCHHHHHHHHHHhccCccHHHHHHHHHHHH--HHHHHCCCchH
Confidence 44556678999999765 6899996 69999998654
No 279
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=22.63 E-value=79 Score=27.80 Aligned_cols=35 Identities=31% Similarity=0.410 Sum_probs=19.2
Q ss_pred cccEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEccc
Q 001613 591 SRGFGFVTFKHEKSAAAAVQA-RFVTIMGKEVEIKSA 626 (1044)
Q Consensus 591 srGfgFV~F~~~e~a~~A~~~-~~~~i~Gr~i~v~~A 626 (1044)
..-|.||+-... .+..+++. ++..+.|+++.|..|
T Consensus 39 ~~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 39 FDNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp -SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred eeeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 345888887665 67777887 999999999999865
No 280
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=22.48 E-value=39 Score=42.27 Aligned_cols=40 Identities=25% Similarity=0.828 Sum_probs=24.9
Q ss_pred ceeeccccccccccc---CcccchhhcchhhHHHHHhhhcCcceeeeecc
Q 001613 974 KICFRCKKEEMQWAN---NPCQHLLWCNVCKRETIEAAAGSEHLCVICDK 1020 (1044)
Q Consensus 974 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1020 (1044)
-+|.-|| ..|-+ --|-|+ .|..|-+.-+++ -.-||+.|.+
T Consensus 644 LkCs~Cn---~R~Kd~vI~kC~H~-FC~~Cvq~r~et---RqRKCP~Cn~ 686 (698)
T KOG0978|consen 644 LKCSVCN---TRWKDAVITKCGHV-FCEECVQTRYET---RQRKCPKCNA 686 (698)
T ss_pred eeCCCcc---CchhhHHHHhcchH-HHHHHHHHHHHH---hcCCCCCCCC
Confidence 3577777 45544 357774 577777766654 3457777765
No 281
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=22.15 E-value=93 Score=37.37 Aligned_cols=47 Identities=21% Similarity=0.183 Sum_probs=35.9
Q ss_pred HHHHhcCCHHHHHHHHHcCCCcchHHHHhhhcCcHHHHHHHHHHHhh
Q 001613 158 VVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAAD 204 (1044)
Q Consensus 158 ~~Ai~~g~~eivklLl~~gadi~~~~~~~a~~g~~~~l~~ll~~a~~ 204 (1044)
..|...|++++++.-..+..+.+.+.+.....|+...+..+...+..
T Consensus 355 ~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 355 DEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 34888899999999999999998888888888887777777655443
No 282
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=21.69 E-value=50 Score=25.07 Aligned_cols=28 Identities=32% Similarity=0.801 Sum_probs=22.8
Q ss_pred cCcccchhhcchhhHHHHHhhhcCcceeeee
Q 001613 988 NNPCQHLLWCNVCKRETIEAAAGSEHLCVIC 1018 (1044)
Q Consensus 988 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1018 (1044)
-.||.|. -|..|-.+.++. ....+|.+|
T Consensus 14 ~~~C~H~-fC~~C~~~~~~~--~~~~~CP~C 41 (41)
T PF00097_consen 14 LLPCGHS-FCRDCLRKWLEN--SGSVKCPLC 41 (41)
T ss_dssp ETTTSEE-EEHHHHHHHHHH--TSSSBTTTT
T ss_pred EecCCCc-chHHHHHHHHHh--cCCccCCcC
Confidence 5899999 799999999987 556667765
No 283
>PF09963 DUF2197: Uncharacterized protein conserved in bacteria (DUF2197); InterPro: IPR019241 This family represents various hypothetical bacterial proteins with no known function.
Probab=21.30 E-value=41 Score=28.15 Aligned_cols=12 Identities=50% Similarity=1.054 Sum_probs=9.7
Q ss_pred cceeeeeccccc
Q 001613 1012 EHLCVICDKKVE 1023 (1044)
Q Consensus 1012 ~~~~~~~~~~~~ 1023 (1044)
+-+|++||++++
T Consensus 2 ~vkC~lCdk~~~ 13 (56)
T PF09963_consen 2 RVKCILCDKKEE 13 (56)
T ss_pred eeEEEecCCEEE
Confidence 458999999874
No 284
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=20.99 E-value=33 Score=38.17 Aligned_cols=47 Identities=34% Similarity=0.852 Sum_probs=32.4
Q ss_pred eeecccccccccc-cCcccchhhcchhhHHHHHhhhcCcceeeeecccccceecc
Q 001613 975 ICFRCKKEEMQWA-NNPCQHLLWCNVCKRETIEAAAGSEHLCVICDKKVEDIMLI 1028 (1044)
Q Consensus 975 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1028 (1044)
.|-+|.+.-.-+- --||+|. .|-.|.+ +-+.--|.-||-+||+|.-+
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHv-FCl~CAr------~~~dK~Cp~C~d~VqrIeq~ 139 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHV-FCLECAR------SDSDKICPLCDDRVQRIEQI 139 (389)
T ss_pred eecccCCcceeeecccccchh-hhhhhhh------cCccccCcCcccHHHHHHHh
Confidence 3777876543332 3699996 5777854 23355799999999998544
Done!