Query 001613
Match_columns 1044
No_of_seqs 512 out of 5277
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 16:29:56 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001613.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_910-914//hhsearch_pdb/001613hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 1.0 1 1 432.5 30.5 367 53-544 10-386 (437)
2 1n11_A Ankyrin; clathrin, BAND 1.0 1 1 410.0 36.2 344 16-453 12-365 (437)
3 4g8k_A 2-5A-dependent ribonucl 1.0 1 1 340.0 31.7 288 55-450 23-319 (337)
4 3utm_A Tankyrase-1; tankyrase, 1.0 1 1 324.8 29.4 288 55-449 22-330 (351)
5 1wdy_A 2-5A-dependent ribonucl 1.0 1 1 319.7 31.0 268 56-430 4-284 (285)
6 4g8k_A 2-5A-dependent ribonucl 1.0 1 1 317.3 31.9 299 19-428 26-330 (337)
7 2fo1_E LIN-12 protein; beta-ba 1.0 1 1 316.8 19.6 320 20-457 39-371 (373)
8 3ljn_A Hypothetical protein; a 1.0 1 1 314.8 17.5 250 51-429 14-274 (364)
9 2fo1_E LIN-12 protein; beta-ba 1.0 1 1 312.7 15.3 319 58-528 38-372 (373)
10 3ljn_A Hypothetical protein; a 1.0 1 1 308.3 16.1 290 85-535 11-322 (364)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=432.50 Aligned_cols=367 Identities=20% Similarity=0.215 Sum_probs=285.4
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 46511259999998399999999991999996344334478987299999990999999999986999884357999844
Q 001613 53 QTAIVTKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLL 132 (1044)
Q Consensus 53 ~~~~~~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~G~~eiVklLL~~GAdin~~d~~g~T~l 132 (1044)
.+..+.||||+||..|++++|++|++.| +++|..+. .|.||||+||..|+.++|++|+++|++++.++.+|.|
T Consensus 10 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g----~~~~~~~~-~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-- 82 (437)
T 1n11_A 10 GGESGLTPLHVASFMGHLPIVKNLLQRG----ASPNVSNV-KVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQT-- 82 (437)
T ss_dssp -----CCHHHHHHHHTCHHHHHHHHHTT----CCSCCSSS-CCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCC--
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHCC----CCCCCCCC-CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC--
T ss_conf 6889988899999878999999999869----99998888-9987999999819799999999589999987999998--
Q ss_pred HHHHHHHCCCCCEEC----------CCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 889998289963011----------8887753589999823999999999976999656778865068479999999998
Q 001613 133 PLELSLSSSRMDVIW----------NPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVA 202 (1044)
Q Consensus 133 pL~~Aa~~g~~eIv~----------~~~~~~~~~L~~Ai~~g~~eivklLL~~ga~i~~~~~~~a~~g~~~~l~~lL~~a 202 (1044)
|||+|+..|+.++++ ..+..+.++|+.|+..|+.+++++|++++++..
T Consensus 83 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~---------------------- 140 (437)
T 1n11_A 83 PLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA---------------------- 140 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC----------------------
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC----------------------
T ss_conf 9999998798999999996799988779999859999998599999999996799876----------------------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 30012478873168876333202568999999960985299999982999986014788884699999999849998875
Q 001613 203 ADKVNESILVLHDSDLGAKEKTTIYECVIREALALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGS 282 (1044)
Q Consensus 203 ~~~~~~~il~l~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~~~~~ll~~ielLl~~gadin~~ 282 (1044)
..+.. |.|||++|+..++.++ +++|++.|++++..
T Consensus 141 -----------------~~~~~--------------g~t~L~~A~~~g~~~~--------------v~~Ll~~g~~~~~~ 175 (437)
T 1n11_A 141 -----------------CMTKK--------------GFTPLHVAAKYGKVRV--------------AELLLERDAHPNAA 175 (437)
T ss_dssp -----------------CCCTT--------------SCCHHHHHHHTTCHHH--------------HHHHHHTTCCTTCC
T ss_pred -----------------CCCCC--------------CCCHHHHHHHCCCHHH--------------HHHHHHCCCCCCCC
T ss_conf -----------------77999--------------9879999997698999--------------99999679998777
Q ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEECC
Q ss_conf 69999992999999919999999998738999777787889943999999639985200022999999996498122327
Q 001613 283 CTDKKVGPPLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQN 362 (1044)
Q Consensus 283 ~~d~~G~TpLh~Aa~~G~~eiVk~LL~~~gadin~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~ivklLL~~Gadvn~~d 362 (1044)
+..|.||||+|+..|+.+++++|++. ++++ +..+..|.||||+|+..+ +.+++++|+++|++++..+
T Consensus 176 --~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~--~~~~~~g~t~L~~A~~~~--------~~~~~~~Ll~~g~~~~~~~ 242 (437)
T 1n11_A 176 --GKNGLTPLHVAVHHNNLDIVKLLLPR-GGSP--HSPAWNGYTPLHIAAKQN--------QVEVARSLLQYGGSANAES 242 (437)
T ss_dssp --CSSCCCHHHHHHHTTCHHHHHHHGGG-TCCS--CCCCTTCCCHHHHHHHTT--------CHHHHHHHHHTTCCTTCCC
T ss_pred --CCCCCCHHHHHHHCCCHHHHHHHHHC-CCCC--CCCCCCCCCHHHHHHHCC--------CHHHHHHHHHCCCCCCCCC
T ss_conf --89998889999981999999999847-9998--876778998899999869--------8999999997699988879
Q ss_pred CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 88882999999859999999999629997556888999299999986989999999977999644458999499999973
Q 001613 363 KLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQ 442 (1044)
Q Consensus 363 ~~G~TpLh~Aa~~g~~eivk~LL~~gad~iN~~d~~G~TpLh~Av~~g~~eiVklLL~~GAdin~~d~~G~TpLh~Aa~~ 442 (1044)
..|.||||+|+..|+.+++++|++++++ ++..+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..
T Consensus 243 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 321 (437)
T 1n11_A 243 VQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY 321 (437)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHS
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 8999799999977889999999966999-998799999799999984999999999848756788799998899999986
Q ss_pred CHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 94999998200276200122266653103871344458876520468998544446983234420235676312333332
Q 001613 443 DMRFLLKAANTCHTNLAFLNQEKQNASLESDEDISGTCEALLSMVDDNSNTERICSGTKIEVCKYYESHSGCIRGSKCFY 522 (1044)
Q Consensus 443 g~~~LL~~~~~~~~d~~~~~~~~~~a~~~~~~~i~~~~~~l~~~id~~~~~~~~~~~~~~~tpL~~Aa~~G~~~ivk~Ll 522 (1044)
|..++++.+.....+.. ..+..+.||||+|+..|+.+++++|+
T Consensus 322 g~~~~v~~Ll~~gad~n-------------------------------------~~~~~g~t~L~~A~~~g~~~iv~~Ll 364 (437)
T 1n11_A 322 GNIKLVKFLLQHQADVN-------------------------------------AKTKLGYSPLHQAAQQGHTDIVTLLL 364 (437)
T ss_dssp SCSHHHHHHHHTTCCTT-------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCC-------------------------------------CCCCCCCCHHHHHHHCCHHHHHHHHH
T ss_conf 94999999996699999-------------------------------------88999988999999878199999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2341111357886433344434
Q 001613 523 ALGEEQHRKMNPGMCMIHASTQ 544 (1044)
Q Consensus 523 ~~GAdi~~~~~~G~t~lh~A~~ 544 (1044)
++|++++..+..|.+|++.+..
T Consensus 365 ~~ga~~~~~~~~g~t~l~~A~~ 386 (437)
T 1n11_A 365 KNGASPNEVSSDGTTPLAIAKR 386 (437)
T ss_dssp HTTCCSCCCCSSSCCHHHHHHH
T ss_pred HCCCCCCCCCCCCCCHHHHHHH
T ss_conf 7768998878998989999988
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=409.98 Aligned_cols=344 Identities=21% Similarity=0.231 Sum_probs=234.3
Q ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 93389999999841999999999731035656653344651125999999839999999999199999634433447898
Q 001613 16 DLETTLIINSLLEDDKKQLINVSKRHFIDNSLDNADQQTAIVTKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSG 95 (1044)
Q Consensus 16 d~e~~~li~aI~~dD~~~l~~~i~~~~~~~~l~~~~~~~~~~~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G 95 (1044)
+...+++..|+..++.+.++.++..+... +..+..+.|+||+||..|+.+++++|++.+ +++|.++. .|
T Consensus 12 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~------~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g----~~~~~~~~-~g 80 (437)
T 1n11_A 12 ESGLTPLHVASFMGHLPIVKNLLQRGASP------NVSNVKVETPLHMAARAGHTEVAKYLLQNK----AKVNAKAK-DD 80 (437)
T ss_dssp ---CCHHHHHHHHTCHHHHHHHHHTTCCS------CCSSSCCCCHHHHHHHHTCHHHHHHHHHHT----CCSSCCCT-TS
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHCCCHHHHHHHHHCC----CCCCCCCC-CC
T ss_conf 89988899999878999999999869999------988889987999999819799999999589----99998799-99
Q ss_pred CHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEC----------CCCCCCHHHHHHHHHCCC
Q ss_conf 7299999990999999999986999884357999844889998289963011----------888775358999982399
Q 001613 96 MTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLLPLELSLSSSRMDVIW----------NPDEYSVEDLVVILGQKN 165 (1044)
Q Consensus 96 ~TpLH~Aa~~G~~eiVklLL~~GAdin~~d~~g~T~lpL~~Aa~~g~~eIv~----------~~~~~~~~~L~~Ai~~g~ 165 (1044)
.||||+|+..|+.++|++|+++|++++..+..|.| ||++|+..|+.+++. ..+..+.++|+.|+..|+
T Consensus 81 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t--~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~ 158 (437)
T 1n11_A 81 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHT--PLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGK 158 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCC--HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC
T ss_pred CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC--HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 98999999879899999999679998877999985--9999998599999999996799876779999879999997698
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 99999999769996567788650684799999999983001247887316887633320256899999996098529999
Q 001613 166 LTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLHDSDLGAKEKTTIYECVIREALALGRATKLQR 245 (1044)
Q Consensus 166 ~eivklLL~~ga~i~~~~~~~a~~g~~~~l~~lL~~a~~~~~~~il~l~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~ 245 (1044)
.+++++|++++++++.. +.. |.|||++
T Consensus 159 ~~~v~~Ll~~g~~~~~~---------------------------------------~~~--------------g~t~L~~ 185 (437)
T 1n11_A 159 VRVAELLLERDAHPNAA---------------------------------------GKN--------------GLTPLHV 185 (437)
T ss_dssp HHHHHHHHHTTCCTTCC---------------------------------------CSS--------------CCCHHHH
T ss_pred HHHHHHHHHCCCCCCCC---------------------------------------CCC--------------CCCHHHH
T ss_conf 99999999679998777---------------------------------------899--------------9888999
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99829999860147888846999999998499988756999999299999991999999999873899977778788994
Q 001613 246 AVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQAGDEDVIEILLKSKNIDINDADADADGN 325 (1044)
Q Consensus 246 A~~~g~~~~~~~~~~~~~~ll~~ielLl~~gadin~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~~gadin~n~~d~~G~ 325 (1044)
|+..++.++ +++|++.|++++.. +..|.||||+|+..|+.+++++|++. |+++ +..+..|.
T Consensus 186 A~~~~~~~~--------------v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~--~~~~~~g~ 246 (437)
T 1n11_A 186 AVHHNNLDI--------------VKLLLPRGGSPHSP--AWNGYTPLHIAAKQNQVEVARSLLQY-GGSA--NAESVQGV 246 (437)
T ss_dssp HHHTTCHHH--------------HHHHGGGTCCSCCC--CTTCCCHHHHHHHTTCHHHHHHHHHT-TCCT--TCCCTTCC
T ss_pred HHHCCCHHH--------------HHHHHHCCCCCCCC--CCCCCCHHHHHHHCCCHHHHHHHHHC-CCCC--CCCCCCCC
T ss_conf 998199999--------------99998479998876--77899889999986989999999976-9998--88798999
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 39999996399852000229999999964981223278888299999985999999999962999755688899929999
Q 001613 326 SALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFF 405 (1044)
Q Consensus 326 TpLh~Aa~~g~~~~~~~~~~~ivklLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~LL~~gad~iN~~d~~G~TpLh~ 405 (1044)
||||+|+..+ +.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++ ++.++..|.||||+
T Consensus 247 t~L~~A~~~g--------~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~ 317 (437)
T 1n11_A 247 TPLHLAAQEG--------HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHV 317 (437)
T ss_dssp CHHHHHHHTT--------CHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHH
T ss_pred CHHHHHHHCC--------CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHH
T ss_conf 7999999778--------89999999966999998799999799999984999999999848756-78879999889999
Q ss_pred HHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHH
Q ss_conf 998698999999997799964445899949999997394999998200
Q 001613 406 AVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLLKAANT 453 (1044)
Q Consensus 406 Av~~g~~eiVklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~LL~~~~~ 453 (1044)
|+..|+.++|++|+++|+|++.+|..|+||||+|+..|..++++.+..
T Consensus 318 A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~ 365 (437)
T 1n11_A 318 ASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365 (437)
T ss_dssp HHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHH
T ss_conf 998694999999996699999889999889999998781999999997
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=1.00 E-value=1 Score=340.04 Aligned_cols=288 Identities=27% Similarity=0.275 Sum_probs=244.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf 51125999999839999999999199999634433447898729999999099999999998699988435799984488
Q 001613 55 AIVTKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLLPL 134 (1044)
Q Consensus 55 ~~~~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~G~~eiVklLL~~GAdin~~d~~g~T~lpL 134 (1044)
..+.|+||.||..|++++|++||+.| +++|.++...|+||||+||..|+.++|++||++|++++..+..+.+ ++
T Consensus 23 ~~~~t~L~~Av~~g~~~~V~~LL~~G----advn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~--~~ 96 (337)
T 4g8k_A 23 VEDNHLLIKAVQNEDVDLVQQLLEGG----ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT--PF 96 (337)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHT----CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC--HH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHCC----CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCHHHHCCCCCC--HH
T ss_conf 88984999999848999999999879----9978348989969999999849899999998759953332157886--46
Q ss_pred HHHHHCCCCCEECCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99982899630118887753589999823999999999976999656778865068479999999998300124788731
Q 001613 135 ELSLSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLH 214 (1044)
Q Consensus 135 ~~Aa~~g~~eIv~~~~~~~~~~L~~Ai~~g~~eivklLL~~ga~i~~~~~~~a~~g~~~~l~~lL~~a~~~~~~~il~l~ 214 (1044)
+.++..+. ..++..++..+.++
T Consensus 97 ~~~~~~~~-----------------------~~~~~~~~~~~~~~----------------------------------- 118 (337)
T 4g8k_A 97 ILAAIAGS-----------------------VKLLKLFLSKGADV----------------------------------- 118 (337)
T ss_dssp HHHHHHTC-----------------------HHHHHHHHTTTCCT-----------------------------------
T ss_pred HHHHHCCC-----------------------CHHHHHHHHCCCHH-----------------------------------
T ss_conf 77775054-----------------------13567763102005-----------------------------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC--------CCC
Q ss_conf 688763332025689999999609852999999829999860147888846999999998499988756--------999
Q 001613 215 DSDLGAKEKTTIYECVIREALALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSC--------TDK 286 (1044)
Q Consensus 215 ~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~~~~~ll~~ielLl~~gadin~~~--------~d~ 286 (1044)
+..+.. |.||+++|+..++.++ +++|++.|++++... .+.
T Consensus 119 ----~~~d~~--------------g~t~l~~A~~~~~~~~--------------~~~ll~~ga~~~~~~~~~~~~~~~~~ 166 (337)
T 4g8k_A 119 ----NECDFY--------------GFTAFMEAAVYGKVKA--------------LKFLYKRGANVNLRRKTKEDQERLRK 166 (337)
T ss_dssp ----TCBCTT--------------CCBHHHHHHHTTCHHH--------------HHHHHHTTCCTTCCCCCC-----CTT
T ss_pred ----HHHCCC--------------CCCHHHHHHHCCCHHH--------------HHHHHHCCCCCCHHHCCCCCCCCCCC
T ss_conf ----553037--------------9987999987186999--------------99999759983433301322000367
Q ss_pred CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCC
Q ss_conf 99929999999199999999987389997777878899439999996399852000229999999964981223278888
Q 001613 287 KVGPPLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGL 366 (1044)
Q Consensus 287 ~G~TpLh~Aa~~G~~eiVk~LL~~~gadin~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~ivklLL~~Gadvn~~d~~G~ 366 (1044)
.|.||||+|+..|+.+++++||+..|+++ +..+..|.|+||.++..+.. .....++++|+++|++++.++..|+
T Consensus 167 ~g~T~L~~A~~~g~~~~v~~LL~~~gad~--n~~d~~g~t~l~~~~~~~~~----~~~~~i~~lLl~~gad~n~~d~~g~ 240 (337)
T 4g8k_A 167 GGATALMDAAEKGHVEVLKILLDEMGADV--NACDNMGRNALIHALLSSDD----SDVEAITHLLLDHGADVNVRGERGK 240 (337)
T ss_dssp CSCCHHHHHHHHTCHHHHHHHHHHSCCCT--TCCCTTSCCHHHHHHHHSCT----TTHHHHHHHHHHTTCCTTCCCGGGC
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHCCCCCC--CCCCCCCCCHHHHHHHHCCC----CCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 89769999998778999999986349896--76578897278999997375----6689999999977999887689999
Q ss_pred CHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCHH
Q ss_conf 299999985999999999962-9997556888999299999986989999999977999644458999499999973949
Q 001613 367 TALHIAAGSGNSQALEDLIRK-EPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMR 445 (1044)
Q Consensus 367 TpLh~Aa~~g~~eivk~LL~~-gad~iN~~d~~G~TpLh~Av~~g~~eiVklLL~~GAdin~~d~~G~TpLh~Aa~~g~~ 445 (1044)
||||+|+..|+.+++++|+.. +++ +|.+|..|+||||+|+..|+.++|++||++|||++.+ +|||+|+..+..
T Consensus 241 t~L~~a~~~~~~~~v~~Ll~~~~~~-vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~ 314 (337)
T 4g8k_A 241 TPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDH 314 (337)
T ss_dssp CHHHHHHHTTCHHHHHHHHTSTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCC-----CHHHHHHHCCCH
T ss_conf 8789999851258999998734875-6676899999999999868799999999878999987-----899999986999
Q ss_pred HHHHH
Q ss_conf 99998
Q 001613 446 FLLKA 450 (1044)
Q Consensus 446 ~LL~~ 450 (1044)
++++.
T Consensus 315 ~iv~~ 319 (337)
T 4g8k_A 315 SLVKV 319 (337)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 4
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=1.00 E-value=1 Score=324.78 Aligned_cols=288 Identities=22% Similarity=0.242 Sum_probs=240.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf 51125999999839999999999199999634433447898729999999099999999998699988435799984488
Q 001613 55 AIVTKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLLPL 134 (1044)
Q Consensus 55 ~~~~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~G~~eiVklLL~~GAdin~~d~~g~T~lpL 134 (1044)
..+.++||.||..|+.+.++.|+... ..+++..|. .|.||||+|+..|+.++|++|+++|++++..+..|.| ||
T Consensus 22 ~~~~~~L~~A~~~g~~~~v~~ll~~~---~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t--~L 95 (351)
T 3utm_A 22 EYKKDELLEAARSGNEEKLMALLTPL---NVNCHASDG-RKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLV--PL 95 (351)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHCCTT---TTTCCCSST-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC--HH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHC---CCCCCCCCC-CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC--HH
T ss_conf 32400599999839989999999864---888655799-9988999999859999999999769999761799980--89
Q ss_pred HHHHHCCCCCEECCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99982899630118887753589999823999999999976999656778865068479999999998300124788731
Q 001613 135 ELSLSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLH 214 (1044)
Q Consensus 135 ~~Aa~~g~~eIv~~~~~~~~~~L~~Ai~~g~~eivklLL~~ga~i~~~~~~~a~~g~~~~l~~lL~~a~~~~~~~il~l~ 214 (1044)
|+|+..|+ .+++++|+++|++++.
T Consensus 96 ~~A~~~g~-----------------------~~iv~~Ll~~g~~~~~--------------------------------- 119 (351)
T 3utm_A 96 HNACSYGH-----------------------YEVTELLLKHGACVNA--------------------------------- 119 (351)
T ss_dssp HHHHHTTC-----------------------HHHHHHHHHTTCCTTC---------------------------------
T ss_pred HHHHHCCC-----------------------HHHHHHHHHCCCCCCC---------------------------------
T ss_conf 99997788-----------------------9999999977999997---------------------------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf 68876333202568999999960985299999982999986014788884699999999849998875699999929999
Q 001613 215 DSDLGAKEKTTIYECVIREALALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLIL 294 (1044)
Q Consensus 215 ~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~~~~~ll~~ielLl~~gadin~~~~d~~G~TpLh~ 294 (1044)
.+.. |.||||+|+..++.++ +++|++.|++++.. +..|.+++++
T Consensus 120 ------~~~~--------------g~t~L~~A~~~~~~~~--------------v~~Ll~~g~~~~~~--~~~g~~~l~~ 163 (351)
T 3utm_A 120 ------MDLW--------------QFTPLHEAASKNRVEV--------------CSLLLSHGADPTLV--NCHGKSAVDM 163 (351)
T ss_dssp ------CCTT--------------CCCHHHHHHHTTCHHH--------------HHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred ------CCCC--------------CCCHHHHHHHCCCHHH--------------HHHHHHCCCCCCCC--CCCCCCCHHH
T ss_conf ------7888--------------9989999997499999--------------99999769998633--6789862377
Q ss_pred ---------------------HHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf ---------------------99919999999998738999777787889943999999639985200022999999996
Q 001613 295 ---------------------ATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLK 353 (1044)
Q Consensus 295 ---------------------Aa~~G~~eiVk~LL~~~gadin~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~ivklLL~ 353 (1044)
++..++.+.++.++.. .... ...+..|.||||+|+..+. ....+++++|++
T Consensus 164 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~--~~~~~~~~t~L~~A~~~~~-----~~~~~~~~~Ll~ 235 (351)
T 3utm_A 164 APTPELRERLTYEFKGHSLLQAAREADLAKVKKTLAL-EIIN--FKQPQSHETALHCAVASLH-----PKRKQVAELLLR 235 (351)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTT-CCTT--CCCTTTCCCHHHHHHHCCS-----TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHH-HCCC--CCCCCCCCCHHHHHHHHHC-----CCHHHHHHHHHH
T ss_conf 7533258999864042179999983249999999970-0013--3578889988999999717-----558999999997
Q ss_pred CCCEEEECCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 49812232788882999999859999999999629997556888999299999986989999999977999644458999
Q 001613 354 HGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRE 433 (1044)
Q Consensus 354 ~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~LL~~gad~iN~~d~~G~TpLh~Av~~g~~eiVklLL~~GAdin~~d~~G~ 433 (1044)
+|++++.++..|+||||+|+..|+.+++++|+++|++ +|.+|..|.||||+|+..|+.+++++|+++|||++.+|..|+
T Consensus 236 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~ 314 (351)
T 3utm_A 236 KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGF 314 (351)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 5999677699999899999985989899999987999-877599999889999982859999999984999888688998
Q ss_pred CHHHHHHHCCHHHHHH
Q ss_conf 4999999739499999
Q 001613 434 RPIDFAKSQDMRFLLK 449 (1044)
Q Consensus 434 TpLh~Aa~~g~~~LL~ 449 (1044)
||+++|.......+..
T Consensus 315 tal~~a~~~~~~~l~~ 330 (351)
T 3utm_A 315 TAAQMGNEAVQQILSE 330 (351)
T ss_dssp CHHHHSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 8365636999999876
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=319.74 Aligned_cols=268 Identities=28% Similarity=0.322 Sum_probs=241.8
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 11259999998399999999991999996344334478987299999990999999999986999884357999844889
Q 001613 56 IVTKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLLPLE 135 (1044)
Q Consensus 56 ~~~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~G~~eiVklLL~~GAdin~~d~~g~T~lpL~ 135 (1044)
.+.++||+|+..|+++++++|++.+ ++++..+...|.||||+|+..|+.+++++|+++|++++..+..|.| |||
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g----~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t--~L~ 77 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGG----ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT--PFL 77 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC--HHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHCC----CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC--HHH
T ss_conf 5443999999718999999999869----9843203899986999999769799999999769997545878998--999
Q ss_pred HHHHCCCCCEECCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99828996301188877535899998239999999999769996567788650684799999999983001247887316
Q 001613 136 LSLSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLHD 215 (1044)
Q Consensus 136 ~Aa~~g~~eIv~~~~~~~~~~L~~Ai~~g~~eivklLL~~ga~i~~~~~~~a~~g~~~~l~~lL~~a~~~~~~~il~l~~ 215 (1044)
+|+..|+ .+++++|+++|++++.
T Consensus 78 ~A~~~~~-----------------------~~~v~~Ll~~g~~~~~---------------------------------- 100 (285)
T 1wdy_A 78 LAAIAGS-----------------------VKLLKLFLSKGADVNE---------------------------------- 100 (285)
T ss_dssp HHHHHTC-----------------------HHHHHHHHHTTCCTTC----------------------------------
T ss_pred HHHHCCC-----------------------HHHHHHHHHCCCCCCC----------------------------------
T ss_conf 9997499-----------------------9999999975999876----------------------------------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------CCC
Q ss_conf 887633320256899999996098529999998299998601478888469999999984999887569--------999
Q 001613 216 SDLGAKEKTTIYECVIREALALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCT--------DKK 287 (1044)
Q Consensus 216 adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~~~~~ll~~ielLl~~gadin~~~~--------d~~ 287 (1044)
.+.. |.|+|++|+..++.++ +++|++.|++++.... +..
T Consensus 101 -----~~~~--------------g~t~L~~A~~~~~~~~--------------~~~Ll~~g~~~~~~~~~~~~~~~~~~~ 147 (285)
T 1wdy_A 101 -----CDFY--------------GFTAFMEAAVYGKVKA--------------LKFLYKRGANVNLRRKTKEDQERLRKG 147 (285)
T ss_dssp -----BCTT--------------CCBHHHHHHHTTCHHH--------------HHHHHHTTCCTTCCCCCCHHHHHTTCC
T ss_pred -----CCCC--------------CCCHHHHHHHHCCHHH--------------HHHHHHHCCCCCCCCCCHHHHHHHCCC
T ss_conf -----5845--------------6889999999098899--------------999998489944110447888866027
Q ss_pred CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCH----HHHHHHHHHCCCEEEECCC
Q ss_conf 992999999919999999998738999777787889943999999639985200022----9999999964981223278
Q 001613 288 VGPPLILATQAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQ----NRIVGILLKHGAIVSQQNK 363 (1044)
Q Consensus 288 G~TpLh~Aa~~G~~eiVk~LL~~~gadin~n~~d~~G~TpLh~Aa~~g~~~~~~~~~----~~ivklLL~~Gadvn~~d~ 363 (1044)
|.||||+|+..|+.+++++|++..|+++ +..+..|.||||+|+..+ + .+++++|+++|++++.++.
T Consensus 148 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~--~~~~~~g~t~l~~a~~~~--------~~~~~~~i~~~Ll~~g~~~~~~~~ 217 (285)
T 1wdy_A 148 GATALMDAAEKGHVEVLKILLDEMGADV--NACDNMGRNALIHALLSS--------DDSDVEAITHLLLDHGADVNVRGE 217 (285)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTSCCCT--TCCCTTSCCHHHHHHHCS--------CTTTHHHHHHHHHHTTCCSSCCCT
T ss_pred CCCHHHHHHHCCCHHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHCC--------CCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9869999998398999999999669998--754889998789999815--------623389999999976999988687
Q ss_pred CCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 88829999998599999999996-29997556888999299999986989999999977999644458
Q 001613 364 LGLTALHIAAGSGNSQALEDLIR-KEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNL 430 (1044)
Q Consensus 364 ~G~TpLh~Aa~~g~~eivk~LL~-~gad~iN~~d~~G~TpLh~Av~~g~~eiVklLL~~GAdin~~d~ 430 (1044)
.|.||||+|+..|+.+++++|++ .+++ ++.+|..|.||||+|+..++.+++++|+++||+++.+|.
T Consensus 218 ~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d~ 284 (285)
T 1wdy_A 218 RGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284 (285)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 7986899999829999999999636998-545089998399999983949999999975999985556
No 6
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=1.00 E-value=1 Score=317.27 Aligned_cols=299 Identities=19% Similarity=0.181 Sum_probs=211.0
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
Q ss_conf 89999999841999999999731035656653344651125999999839999999999199999634433447898729
Q 001613 19 TTLIINSLLEDDKKQLINVSKRHFIDNSLDNADQQTAIVTKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTA 98 (1044)
Q Consensus 19 ~~~li~aI~~dD~~~l~~~i~~~~~~~~l~~~~~~~~~~~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~Tp 98 (1044)
-++|+.|+..+|++.++.++..+...+.. ....+.||||+||..|+.++|++||++| ++++.++. .+.++
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~-----~~~~g~TpLh~A~~~g~~~iv~~Ll~~g----a~~~~~~~-~~~~~ 95 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQ-----EEEGGWTPLHNAVQMSREDIVELLLRHG----ADPVLRKK-NGATP 95 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCC-----CTTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCT-TCCCH
T ss_pred CHHHHHHHHCCCHHHHHHHHHCCCCCCCC-----CCCCCCCHHHHHHHCCCHHHHHHHHHCC----CCHHHHCC-CCCCH
T ss_conf 84999999848999999999879997834-----8989969999999849899999998759----95333215-78864
Q ss_pred HHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCC
Q ss_conf 99999909999999999869998843579998448899982899630118887753589999823999999999976999
Q 001613 99 LHLAAESHTARCVELLLKKRARTDIRSKDGRRLLPLELSLSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKE 178 (1044)
Q Consensus 99 LH~Aa~~G~~eiVklLL~~GAdin~~d~~g~T~lpL~~Aa~~g~~eIv~~~~~~~~~~L~~Ai~~g~~eivklLL~~ga~ 178 (1044)
++.++..+...++..+++.+++++..+..|.| ||++|+..++ .+++++|+++|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t--~l~~A~~~~~-----------------------~~~~~~ll~~ga~ 150 (337)
T 4g8k_A 96 FILAAIAGSVKLLKLFLSKGADVNECDFYGFT--AFMEAAVYGK-----------------------VKALKFLYKRGAN 150 (337)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCB--HHHHHHHTTC-----------------------HHHHHHHHHTTCC
T ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCC--HHHHHHHCCC-----------------------HHHHHHHHHCCCC
T ss_conf 67777505413567763102005553037998--7999987186-----------------------9999999975998
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHH
Q ss_conf 65677886506847999999999830012478873168876333202568999999960985299999982999986014
Q 001613 179 LDEVAYANAVGGRIVALAALLIVAADKVNESILVLHDSDLGAKEKTTIYECVIREALALGRATKLQRAVKRNSTPTTSQS 258 (1044)
Q Consensus 179 i~~~~~~~a~~g~~~~l~~lL~~a~~~~~~~il~l~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~ 258 (1044)
++... ....+....+ ..|.||||+|+..++.++
T Consensus 151 ~~~~~-----------------------------~~~~~~~~~~--------------~~g~T~L~~A~~~g~~~~---- 183 (337)
T 4g8k_A 151 VNLRR-----------------------------KTKEDQERLR--------------KGGATALMDAAEKGHVEV---- 183 (337)
T ss_dssp TTCCC-----------------------------CCC-----CT--------------TCSCCHHHHHHHHTCHHH----
T ss_pred CCHHH-----------------------------CCCCCCCCCC--------------CCCCCHHHHHHHCCCHHH----
T ss_conf 34333-----------------------------0132200036--------------789769999998778999----
Q ss_pred HHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCHHHHHHHCCC----HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 7888846999999998-49998875699999929999999199----999999987389997777878899439999996
Q 001613 259 AEKRKLLLLEIELLQL-FGAVANGSCTDKKVGPPLILATQAGD----EDVIEILLKSKNIDINDADADADGNSALHCALK 333 (1044)
Q Consensus 259 ~~~~~~ll~~ielLl~-~gadin~~~~d~~G~TpLh~Aa~~G~----~eiVk~LL~~~gadin~n~~d~~G~TpLh~Aa~ 333 (1044)
+++|++ .|++++.. +..|.|+++.++..+. ..++++|++. |+++ +.++..|.||||+|+.
T Consensus 184 ----------v~~LL~~~gad~n~~--d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~-gad~--n~~d~~g~t~L~~a~~ 248 (337)
T 4g8k_A 184 ----------LKILLDEMGADVNAC--DNMGRNALIHALLSSDDSDVEAITHLLLDH-GADV--NVRGERGKTPLILAVE 248 (337)
T ss_dssp ----------HHHHHHHSCCCTTCC--CTTSCCHHHHHHHHSCTTTHHHHHHHHHHT-TCCT--TCCCGGGCCHHHHHHH
T ss_pred ----------HHHHHHCCCCCCCCC--CCCCCCHHHHHHHHCCCCCHHHHHHHHHHC-CCCC--CCCCCCCCCHHHHHHH
T ss_conf ----------999986349896765--788972789999973756689999999977-9998--8768999987899998
Q ss_pred CCCCCCCCCCHHHHHHHHHH-CCCEEEECCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCH
Q ss_conf 39985200022999999996-49812232788882999999859999999999629997556888999299999986989
Q 001613 334 TSMGLSQHILQNRIVGILLK-HGAIVSQQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHM 412 (1044)
Q Consensus 334 ~g~~~~~~~~~~~ivklLL~-~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~LL~~gad~iN~~d~~G~TpLh~Av~~g~~ 412 (1044)
.+ +.+++++|++ .|++++.+|..|+||||+|+..|+.++|++||++|++ +|.+ +|||+|+.+|+.
T Consensus 249 ~~--------~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd-~n~~-----~~L~~A~~~~~~ 314 (337)
T 4g8k_A 249 KK--------HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS-TDCG-----DLVMTARRNYDH 314 (337)
T ss_dssp TT--------CHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCS-STTC-----CHHHHHHHTTCH
T ss_pred HH--------HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCCC-----CHHHHHHHCCCH
T ss_conf 51--------258999998734875667689999999999986879999999987899-9987-----899999986999
Q ss_pred HHHHHHHHCCCCCCCC
Q ss_conf 9999999779996444
Q 001613 413 VCAEVLLRWGANSEVL 428 (1044)
Q Consensus 413 eiVklLL~~GAdin~~ 428 (1044)
++|++||++|||++..
T Consensus 315 ~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 315 SLVKVLLSHGAKEDFH 330 (337)
T ss_dssp HHHHHHHHTTCCC---
T ss_pred HHHHHHHHCCCCCCCC
T ss_conf 9999999876998989
No 7
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=316.78 Aligned_cols=320 Identities=18% Similarity=0.165 Sum_probs=259.1
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 99999998419999999997310356566533446511259999998399999999991999996344334478987299
Q 001613 20 TLIINSLLEDDKKQLINVSKRHFIDNSLDNADQQTAIVTKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTAL 99 (1044)
Q Consensus 20 ~~li~aI~~dD~~~l~~~i~~~~~~~~l~~~~~~~~~~~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpL 99 (1044)
.+++.++..++.+.+........ +-....+++.-+...|..+++++++.. ..+. .|.|||
T Consensus 39 ~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~~~~~---------~~~~-~g~t~L 98 (373)
T 2fo1_E 39 HSLLEASYDGYIKRQRNELQHYS----------LYPNPQGYGNGNDFLGDFNHTNLQIPT---------EPEP-ESPIKL 98 (373)
T ss_dssp ---------------------------------------------------------------------------CCCHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHC----------CCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCC-CCCCHH
T ss_conf 53324567764430143666413----------456864567887755556653122466---------7899-986579
Q ss_pred HHHHHCCCHHHHHHHHHCCCCCCCCC-CCCCCCHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCC
Q ss_conf 99999099999999998699988435-79998448899982899630118887753589999823999999999976999
Q 001613 100 HLAAESHTARCVELLLKKRARTDIRS-KDGRRLLPLELSLSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKE 178 (1044)
Q Consensus 100 H~Aa~~G~~eiVklLL~~GAdin~~d-~~g~T~lpL~~Aa~~g~~eIv~~~~~~~~~~L~~Ai~~g~~eivklLL~~ga~ 178 (1044)
|+|+..+. +++++|+. ++++..+ ..|+| |||+|+..|+.+++..+ + ...++.|++.
T Consensus 99 ~~Aa~~~~-~~~~~L~~--~~~n~~d~~~g~t--~Lh~Aa~~g~~~~v~~L--------l-------~~~~~~ll~~--- 155 (373)
T 2fo1_E 99 HTEAAGSY-AITEPITR--ESVNIIDPRHNRT--VLHWIASNSSAEKSEDL--------I-------VHEAKECIAA--- 155 (373)
T ss_dssp HHHHHSSS-CCCSCCST--TTTTTCCCSSCCC--HHHHHHCTTCCSCCTTH--------H-------HHHHHHHHHT---
T ss_pred HHHHCCCC-HHHHHHCC--CCCCCCCCCCCCC--HHHHHHHCCCHHHHHHH--------H-------HHHHHHHHHC---
T ss_conf 99863871-68887500--2343357767988--89999877987789999--------9-------9999999865---
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHH
Q ss_conf 65677886506847999999999830012478873168876333202568999999960985299999982999986014
Q 001613 179 LDEVAYANAVGGRIVALAALLIVAADKVNESILVLHDSDLGAKEKTTIYECVIREALALGRATKLQRAVKRNSTPTTSQS 258 (1044)
Q Consensus 179 i~~~~~~~a~~g~~~~l~~lL~~a~~~~~~~il~l~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~ 258 (1044)
+++++..+.. |.||||+|+..++.++
T Consensus 156 ------------------------------------ga~vn~~d~~--------------g~TpL~~A~~~g~~~i---- 181 (373)
T 2fo1_E 156 ------------------------------------GADVNAMDCD--------------ENTPLMLAVLARRRRL---- 181 (373)
T ss_dssp ------------------------------------CCCTTCCCTT--------------SCCHHHHHHHHTCHHH----
T ss_pred ------------------------------------CCCCCCCCCC--------------CCCHHHHHHHCCHHHH----
T ss_conf ------------------------------------9987677899--------------9898999998694999----
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC---CCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 788884699999999849998875699999929999999199999999987389---99777787889943999999639
Q 001613 259 AEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQAGDEDVIEILLKSKN---IDINDADADADGNSALHCALKTS 335 (1044)
Q Consensus 259 ~~~~~~ll~~ielLl~~gadin~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~~g---adin~n~~d~~G~TpLh~Aa~~g 335 (1044)
+++|++.|++++.. +..|.||||+|+..|+.+++++|++. + +++ +..+..|.||||+|+..+
T Consensus 182 ----------v~~Ll~~ga~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~--~~~d~~g~t~L~~A~~~~ 246 (373)
T 2fo1_E 182 ----------VAYLMKAGADPTIY--NKSERSALHQAAANRDFGMMVYMLNS-TKLKGDI--EELDRNGMTALMIVAHNE 246 (373)
T ss_dssp ----------HHHHHHTTCCSCCC--CTTCCCHHHHHHHTTCHHHHHHHTTS-HHHHHTT--SCCCTTSCCHHHHHHHSC
T ss_pred ----------HHHHHHCCCCCCCC--CCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCCH--HHCCCCCCCHHHHHHHHC
T ss_conf ----------99999779997615--89898799999877998899999845-7655673--223778997999999837
Q ss_pred CCCCCCCCHHHHHHHHHHCCCEEEE--------CCCCCCCHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCCHHHHH
Q ss_conf 9852000229999999964981223--------2788882999999859999999999629-997556888999299999
Q 001613 336 MGLSQHILQNRIVGILLKHGAIVSQ--------QNKLGLTALHIAAGSGNSQALEDLIRKE-PDCINLKTIMMETPLFFA 406 (1044)
Q Consensus 336 ~~~~~~~~~~~ivklLL~~Gadvn~--------~d~~G~TpLh~Aa~~g~~eivk~LL~~g-ad~iN~~d~~G~TpLh~A 406 (1044)
. ..+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++++ ++ +|.+|..|.||||+|
T Consensus 247 ~-----~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-~n~~d~~g~TpL~~A 320 (373)
T 2fo1_E 247 G-----RDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN-KDKQDEDGKTPIMLA 320 (373)
T ss_dssp S-----TTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC-TTCCCTTCCCHHHHH
T ss_pred C-----CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCC-CCCCCCCCCCHHHHH
T ss_conf 8-----3449999999977997655554445755545888999999809999999999736898-667698999899999
Q ss_pred HHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCC
Q ss_conf 986989999999977999644458999499999973949999982002762
Q 001613 407 VKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLLKAANTCHTN 457 (1044)
Q Consensus 407 v~~g~~eiVklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~LL~~~~~~~~d 457 (1044)
+..|+.++|++|+++|++++.+|..|+||||+|+..|..++++.+..+..+
T Consensus 321 ~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 321 AQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp HHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred HHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 986899999999976998547798999999999985988899998733734
No 8
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=1.00 E-value=1 Score=314.84 Aligned_cols=250 Identities=15% Similarity=0.148 Sum_probs=211.0
Q ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 34465112599999983999999999919999963443344789872999999909999999999869998843579998
Q 001613 51 DQQTAIVTKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRR 130 (1044)
Q Consensus 51 ~~~~~~~~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~G~~eiVklLL~~GAdin~~d~~g~T 130 (1044)
...+..+.|+||+||..|+++++++|++.| +++|..+. .|.||||+||..|+.++|++|+++|++++. .+|.|
T Consensus 14 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g----~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t 86 (364)
T 3ljn_A 14 IKSDDENMEKIHVAARKGQTDEVRRLIETG----VSPTIQNR-FGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQK 86 (364)
T ss_dssp --CCHHHHHHHHHHHHHTCHHHHHHHHHTT----CCTTCCCT-TCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBC
T ss_pred CCCCCCCCCHHHHHHHCCCHHHHHHHHHCC----CCCCCCCC-CCCCHHHHHHHCCCHHHHHHHHHCCCCCCC--CCCCC
T ss_conf 554889997999999809999999999869----89422489-999699999985989999999977997545--68998
Q ss_pred CHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHCCCHHHHHHHHHC----CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 448899982899630118887753589999823999999999976----9996567788650684799999999983001
Q 001613 131 LLPLELSLSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQK----TKELDEVAYANAVGGRIVALAALLIVAADKV 206 (1044)
Q Consensus 131 ~lpL~~Aa~~g~~eIv~~~~~~~~~~L~~Ai~~g~~eivklLL~~----ga~i~~~~~~~a~~g~~~~l~~lL~~a~~~~ 206 (1044)
|||+|+..|+ .+++++|++. +.+++...
T Consensus 87 --~L~~A~~~g~-----------------------~~~v~~Ll~~~~~~~~~~~~~~----------------------- 118 (364)
T 3ljn_A 87 --PIHLAVMANK-----------------------TDLVVALVEGAKERGQMPESLL----------------------- 118 (364)
T ss_dssp --HHHHHHHTTC-----------------------HHHHHHHHHHHHHHTCCHHHHH-----------------------
T ss_pred --HHHHHHHCCC-----------------------HHHHHHHHHHCCCCCCCHHHHH-----------------------
T ss_conf --8999988699-----------------------8899999971333587778898-----------------------
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 24788731688763332025689999999609852999999829999860147888846999999998499988756999
Q 001613 207 NESILVLHDSDLGAKEKTTIYECVIREALALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDK 286 (1044)
Q Consensus 207 ~~~il~l~~adin~~~~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~~~~~ll~~ielLl~~gadin~~~~d~ 286 (1044)
.. ...... ....++ ..+.
T Consensus 119 ------~~----------------------------------~~~~~~--------------------~~~~~~--~~~~ 136 (364)
T 3ljn_A 119 ------NE----------------------------------CDEREV--------------------NEIGSH--VKHC 136 (364)
T ss_dssp ------TC----------------------------------CCCCCE--------------------EEETTE--EEEE
T ss_pred ------HH----------------------------------CCHHHH--------------------HHHCCC--CCCC
T ss_conf ------63----------------------------------026766--------------------540356--6798
Q ss_pred CCCCHHHHHHHCC--CHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCE-----EE
Q ss_conf 9992999999919--9999999987389997777878899439999996399852000229999999964981-----22
Q 001613 287 KVGPPLILATQAG--DEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAI-----VS 359 (1044)
Q Consensus 287 ~G~TpLh~Aa~~G--~~eiVk~LL~~~gadin~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~ivklLL~~Gad-----vn 359 (1044)
.|.||||+|+..| +.+++++|++. |+++ +..+..|.||||+|+..| +.+++++|+++|++ ++
T Consensus 137 ~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~--~~~d~~g~t~L~~A~~~g--------~~~~v~~Ll~~g~~~~~~~~~ 205 (364)
T 3ljn_A 137 KGQTALHWCVGLGPEYLEMIKILVQL-GASP--TAKDKADETPLMRAMEFR--------NREALDLMMDTVPSKSSLRLD 205 (364)
T ss_dssp SCCCHHHHHHHSCGGGHHHHHHHHHH-TCCT--TCCCTTSCCHHHHHHHTT--------CHHHHHHHHHHCSCSSSCCTT
T ss_pred CCCCHHHHHHHCCCCHHHHHHHHHHC-CCCC--CCCCCCCCCHHHHHHHCC--------CHHHHHHHHHCCCCCCCCCCC
T ss_conf 89878999997499669999999976-9997--362889998999999829--------899999998605541235552
Q ss_pred ECCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 3278888299999985999999999962999755688899929999998698999999997799964445
Q 001613 360 QQNKLGLTALHIAAGSGNSQALEDLIRKEPDCINLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLN 429 (1044)
Q Consensus 360 ~~d~~G~TpLh~Aa~~g~~eivk~LL~~gad~iN~~d~~G~TpLh~Av~~g~~eiVklLL~~GAdin~~d 429 (1044)
.++..|+||||+|+..|+.+++++|+++|++ +|.+|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 206 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~ 274 (364)
T 3ljn_A 206 YANKQGNSHLHWAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQA 274 (364)
T ss_dssp CCCTTCCCTTHHHHTTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHT
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCHHHHC
T ss_conf 3288998099999975988999999986999-88879999988999998382999999997488055415
No 9
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=312.71 Aligned_cols=319 Identities=14% Similarity=0.102 Sum_probs=203.8
Q ss_pred CHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 25999999839999999999199999634433447898729999999099999999998699988435799984488999
Q 001613 58 TKLLRVSCIFDSVSCATSLVNGDLGPVALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLLPLELS 137 (1044)
Q Consensus 58 ~T~Lh~AA~~G~~eivk~LL~~g~~~~adiN~~d~~~G~TpLH~Aa~~G~~eiVklLL~~GAdin~~d~~g~T~lpL~~A 137 (1044)
..+|..|+..|+.+.++.+++.. ..+. .-.++++-+...|+.+++++++.. ..+..|.| +||+|
T Consensus 38 ~~~l~~~~~~~~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~g~t--~L~~A 101 (373)
T 2fo1_E 38 QHSLLEASYDGYIKRQRNELQHY----SLYP-----NPQGYGNGNDFLGDFNHTNLQIPT-----EPEPESPI--KLHTE 101 (373)
T ss_dssp ----------------------------------------------------------------------CCC--HHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHH----CCCC-----CCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCC--HHHHH
T ss_conf 25332456776443014366641----3456-----864567887755556653122466-----78999865--79998
Q ss_pred HHCCCCCEECCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 82899630118887753589999823999999999976999656778865068479999999998300124788731688
Q 001613 138 LSSSRMDVIWNPDEYSVEDLVVILGQKNLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLHDSD 217 (1044)
Q Consensus 138 a~~g~~eIv~~~~~~~~~~L~~Ai~~g~~eivklLL~~ga~i~~~~~~~a~~g~~~~l~~lL~~a~~~~~~~il~l~~ad 217 (1044)
+..+. +++ ++|+ ..+
T Consensus 102 a~~~~-~~~-----------------------~~L~-----------------------------------------~~~ 116 (373)
T 2fo1_E 102 AAGSY-AIT-----------------------EPIT-----------------------------------------RES 116 (373)
T ss_dssp HHSSS-CCC-----------------------SCCS-----------------------------------------TTT
T ss_pred HCCCC-HHH-----------------------HHHC-----------------------------------------CCC
T ss_conf 63871-688-----------------------8750-----------------------------------------023
Q ss_pred CCCCC-CCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 76333-20256899999996098529999998299998601478888469999999984999887569999992999999
Q 001613 218 LGAKE-KTTIYECVIREALALGRATKLQRAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILAT 296 (1044)
Q Consensus 218 in~~~-~~~~~~~~i~~a~~~gg~t~L~~A~~~g~~~~~~~~~~~~~~ll~~ielLl~~gadin~~~~d~~G~TpLh~Aa 296 (1044)
++..+ .. |.|+||+|+..++.++..... ...++.|++.|++++.. |..|.||||+|+
T Consensus 117 ~n~~d~~~--------------g~t~Lh~Aa~~g~~~~v~~Ll------~~~~~~ll~~ga~vn~~--d~~g~TpL~~A~ 174 (373)
T 2fo1_E 117 VNIIDPRH--------------NRTVLHWIASNSSAEKSEDLI------VHEAKECIAAGADVNAM--DCDENTPLMLAV 174 (373)
T ss_dssp TTTCCCSS--------------CCCHHHHHHCTTCCSCCTTHH------HHHHHHHHHTCCCTTCC--CTTSCCHHHHHH
T ss_pred CCCCCCCC--------------CCCHHHHHHHCCCHHHHHHHH------HHHHHHHHHCCCCCCCC--CCCCCCHHHHHH
T ss_conf 43357767--------------988899998779877899999------99999998659987677--899989899999
Q ss_pred HCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC---CEEEECCCCCCCHHHHHH
Q ss_conf 91999999999873899977778788994399999963998520002299999999649---812232788882999999
Q 001613 297 QAGDEDVIEILLKSKNIDINDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHG---AIVSQQNKLGLTALHIAA 373 (1044)
Q Consensus 297 ~~G~~eiVk~LL~~~gadin~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~ivklLL~~G---advn~~d~~G~TpLh~Aa 373 (1044)
..|+.+++++|++. |+++ +..+..|.||||+|+..| +.+++++|++++ ++++..+..|.||||+|+
T Consensus 175 ~~g~~~iv~~Ll~~-ga~~--~~~~~~g~t~L~~A~~~g--------~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~ 243 (373)
T 2fo1_E 175 LARRRRLVAYLMKA-GADP--TIYNKSERSALHQAAANR--------DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA 243 (373)
T ss_dssp HHTCHHHHHHHHHT-TCCS--CCCCTTCCCHHHHHHHTT--------CHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHH
T ss_pred HCCHHHHHHHHHHC-CCCC--CCCCCCCCCHHHHHHHCC--------CHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHH
T ss_conf 86949999999977-9997--615898987999998779--------988999998457655673223778997999999
Q ss_pred HCC---CHHHHHHHHHCCCCCCCC--------CCCCCCCHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHH
Q ss_conf 859---999999999629997556--------8889992999999869899999999779-9964445899949999997
Q 001613 374 GSG---NSQALEDLIRKEPDCINL--------KTIMMETPLFFAVKNDHMVCAEVLLRWG-ANSEVLNLRRERPIDFAKS 441 (1044)
Q Consensus 374 ~~g---~~eivk~LL~~gad~iN~--------~d~~G~TpLh~Av~~g~~eiVklLL~~G-Adin~~d~~G~TpLh~Aa~ 441 (1044)
..+ +.+++++|+++|++ ++. .+..|.||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+.
T Consensus 244 ~~~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~ 322 (373)
T 2fo1_E 244 HNEGRDQVASAKLLVEKGAK-VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQ 322 (373)
T ss_dssp HSCSTTHHHHHHHHHHHTCC-SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 83783449999999977997-65555444575554588899999980999999999973689866769899989999998
Q ss_pred CCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 39499999820027620012226665310387134445887652046899854444698323442023567631233333
Q 001613 442 QDMRFLLKAANTCHTNLAFLNQEKQNASLESDEDISGTCEALLSMVDDNSNTERICSGTKIEVCKYYESHSGCIRGSKCF 521 (1044)
Q Consensus 442 ~g~~~LL~~~~~~~~d~~~~~~~~~~a~~~~~~~i~~~~~~l~~~id~~~~~~~~~~~~~~~tpL~~Aa~~G~~~ivk~L 521 (1044)
.|..++++.+.....+.. ..+..+.|||++|+..|+.+++++|
T Consensus 323 ~g~~~iv~~Ll~~gad~~-------------------------------------~~d~~g~t~l~~A~~~g~~~iv~~L 365 (373)
T 2fo1_E 323 EGRIEVVMYLIQQGASVE-------------------------------------AVDATDHTARQLAQANNHHNIVDIF 365 (373)
T ss_dssp HTCHHHHHHHHHTTCCSS-------------------------------------CCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCC-------------------------------------CCCCCCCCHHHHHHHCCCHHHHHHH
T ss_conf 689999999997699854-------------------------------------7798999999999985988899998
Q ss_pred CCCCCCC
Q ss_conf 2234111
Q 001613 522 YALGEEQ 528 (1044)
Q Consensus 522 l~~GAdi 528 (1044)
++++++.
T Consensus 366 l~~~a~~ 372 (373)
T 2fo1_E 366 DRCRPER 372 (373)
T ss_dssp HTTC---
T ss_pred HHCCCCC
T ss_conf 7337345
No 10
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=1.00 E-value=1 Score=308.28 Aligned_cols=290 Identities=16% Similarity=0.120 Sum_probs=229.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHCC
Q ss_conf 34433447898729999999099999999998699988435799984488999828996301188877535899998239
Q 001613 85 ALVNEVEESSGMTALHLAAESHTARCVELLLKKRARTDIRSKDGRRLLPLELSLSSSRMDVIWNPDEYSVEDLVVILGQK 164 (1044)
Q Consensus 85 adiN~~d~~~G~TpLH~Aa~~G~~eiVklLL~~GAdin~~d~~g~T~lpL~~Aa~~g~~eIv~~~~~~~~~~L~~Ai~~g 164 (1044)
.+++..|. .|.||||+||..|+.++|++|+++|++++..+..|.| |||+|+..|+
T Consensus 11 ~~~~~~d~-~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t--~L~~A~~~g~---------------------- 65 (364)
T 3ljn_A 11 LNRIKSDD-ENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCT--ALHLACKFGC---------------------- 65 (364)
T ss_dssp -----CCH-HHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC--HHHHHHHHCC----------------------
T ss_pred CCCCCCCC-CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC--HHHHHHHCCC----------------------
T ss_conf 88455488-9997999999809999999999869894224899996--9999998598----------------------
Q ss_pred CHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 99999999976999656778865068479999999998300124788731688763332025689999999609852999
Q 001613 165 NLTTVKLLSQKTKELDEVAYANAVGGRIVALAALLIVAADKVNESILVLHDSDLGAKEKTTIYECVIREALALGRATKLQ 244 (1044)
Q Consensus 165 ~~eivklLL~~ga~i~~~~~~~a~~g~~~~l~~lL~~a~~~~~~~il~l~~adin~~~~~~~~~~~i~~a~~~gg~t~L~ 244 (1044)
.+++++|++.+++++
T Consensus 66 -~~~v~~Ll~~g~~~~---------------------------------------------------------------- 80 (364)
T 3ljn_A 66 -VDTAKYLASVGEVHS---------------------------------------------------------------- 80 (364)
T ss_dssp -HHHHHHHHHHCCCCC----------------------------------------------------------------
T ss_pred -HHHHHHHHHCCCCCC----------------------------------------------------------------
T ss_conf -999999997799754----------------------------------------------------------------
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC---CCCC------
Q ss_conf 9998299998601478888469999999984999887569999992999999919999999998738---9997------
Q 001613 245 RAVKRNSTPTTSQSAEKRKLLLLEIELLQLFGAVANGSCTDKKVGPPLILATQAGDEDVIEILLKSK---NIDI------ 315 (1044)
Q Consensus 245 ~A~~~g~~~~~~~~~~~~~~ll~~ielLl~~gadin~~~~d~~G~TpLh~Aa~~G~~eiVk~LL~~~---gadi------ 315 (1044)
+..|.||||+|+..|+.+++++|++.. ++++
T Consensus 81 ----------------------------------------~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 120 (364)
T 3ljn_A 81 ----------------------------------------LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNE 120 (364)
T ss_dssp ----------------------------------------CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTC
T ss_pred ----------------------------------------CCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf ----------------------------------------5689988999988699889999997133358777889863
Q ss_pred ---------CCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHCCCHHHHHHHHH
Q ss_conf ---------77787889943999999639985200022999999996498122327888829999998599999999996
Q 001613 316 ---------NDADADADGNSALHCALKTSMGLSQHILQNRIVGILLKHGAIVSQQNKLGLTALHIAAGSGNSQALEDLIR 386 (1044)
Q Consensus 316 ---------n~n~~d~~G~TpLh~Aa~~g~~~~~~~~~~~ivklLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~LL~ 386 (1044)
+.+..+..|.||||+|+..|. .+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus 121 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~------~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 121 CDEREVNEIGSHVKHCKGQTALHWCVGLGP------EYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMD 194 (364)
T ss_dssp CCCCCEEEETTEEEEESCCCHHHHHHHSCG------GGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHCCCCCCCCCCCHHHHHHHCCC------CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
T ss_conf 026766540356679889878999997499------66999999997699973628899989999998298999999986
Q ss_pred CCCCC----CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 29997----55688899929999998698999999997799964445899949999997394999998200276200122
Q 001613 387 KEPDC----INLKTIMMETPLFFAVKNDHMVCAEVLLRWGANSEVLNLRRERPIDFAKSQDMRFLLKAANTCHTNLAFLN 462 (1044)
Q Consensus 387 ~gad~----iN~~d~~G~TpLh~Av~~g~~eiVklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~LL~~~~~~~~d~~~~~ 462 (1044)
++++. +|..+..|.||||+|+..|+.++|++|+++|+|++.+|..|.||||+|+..|..++++.+.....+.....
T Consensus 195 ~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~ 274 (364)
T 3ljn_A 195 TVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQA 274 (364)
T ss_dssp HCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCHHHHC
T ss_conf 05541235552328899809999997598899999998699988879999988999998382999999997488055415
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2666531038713444588765204689985444469832344202356763123333322341111357886
Q 001613 463 QEKQNASLESDEDISGTCEALLSMVDDNSNTERICSGTKIEVCKYYESHSGCIRGSKCFYALGEEQHRKMNPG 535 (1044)
Q Consensus 463 ~~~~~a~~~~~~~i~~~~~~l~~~id~~~~~~~~~~~~~~~tpL~~Aa~~G~~~ivk~Ll~~GAdi~~~~~~G 535 (1044)
.+. ..+.. .......++++++|+..|+.+.+..|+..+++.......+
T Consensus 275 ~~~-----------------------~~~~~--~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~~~~~~~~~~ 322 (364)
T 3ljn_A 275 CPY-----------------------HNGTT--VLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNT 322 (364)
T ss_dssp CTT-----------------------BSSSS--BCGGGCCCCTTSCSSCCHHHHHHHHHHHHHHHHHHTC---
T ss_pred CCC-----------------------CCCCC--CCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 756-----------------------67642--3565432000124322168789999999879987402477
Done!