Query 001615
Match_columns 1044
No_of_seqs 731 out of 4681
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:10:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0920 ATP-dependent RNA heli 100.0 1E-140 3E-145 1250.9 58.8 751 261-1043 152-919 (924)
2 KOG0922 DEAH-box RNA helicase 100.0 4E-131 8E-136 1109.9 52.8 622 271-977 40-665 (674)
3 KOG0924 mRNA splicing factor A 100.0 6E-128 1E-132 1064.3 43.0 621 273-980 347-974 (1042)
4 KOG0923 mRNA splicing factor A 100.0 2E-124 5E-129 1036.3 45.9 626 271-979 254-883 (902)
5 KOG0925 mRNA splicing factor A 100.0 2E-121 4E-126 982.6 47.4 633 260-978 25-666 (699)
6 PRK11131 ATP-dependent RNA hel 100.0 3E-113 6E-118 1058.5 60.7 623 274-978 66-696 (1294)
7 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3E-109 7E-114 1027.0 60.3 643 253-978 38-686 (1283)
8 COG1643 HrpA HrpA-like helicas 100.0 8E-106 2E-110 961.7 47.2 642 261-975 29-707 (845)
9 KOG0926 DEAH-box RNA helicase 100.0 4E-101 9E-106 864.1 42.2 634 269-976 243-1020(1172)
10 KOG0921 Dosage compensation co 100.0 4.2E-91 9.1E-96 790.8 37.9 762 264-1041 360-1136(1282)
11 TIGR01970 DEAH_box_HrpB ATP-de 100.0 3E-88 6.4E-93 826.3 53.9 568 281-973 1-572 (819)
12 PRK11664 ATP-dependent RNA hel 100.0 1.7E-86 3.7E-91 813.3 53.0 557 280-973 3-565 (812)
13 PHA02653 RNA helicase NPH-II; 100.0 2.7E-59 5.9E-64 558.8 33.0 401 285-778 167-595 (675)
14 KOG0331 ATP-dependent RNA heli 100.0 1.5E-50 3.2E-55 457.2 26.6 344 261-688 92-451 (519)
15 PTZ00110 helicase; Provisional 100.0 4.3E-46 9.4E-51 445.2 37.5 328 274-687 144-486 (545)
16 KOG0330 ATP-dependent RNA heli 100.0 4.4E-47 9.5E-52 400.7 23.5 334 261-685 62-407 (476)
17 KOG0335 ATP-dependent RNA heli 100.0 6.5E-47 1.4E-51 420.0 16.1 365 211-683 48-442 (482)
18 KOG0333 U5 snRNP-like RNA heli 100.0 3.8E-44 8.2E-49 390.4 22.0 331 265-686 250-625 (673)
19 KOG0336 ATP-dependent RNA heli 100.0 1.2E-43 2.5E-48 374.8 24.4 340 245-688 217-575 (629)
20 COG0513 SrmB Superfamily II DN 100.0 2E-43 4.3E-48 418.2 28.4 331 264-685 33-380 (513)
21 KOG0338 ATP-dependent RNA heli 100.0 7.7E-44 1.7E-48 386.2 20.9 346 254-687 175-535 (691)
22 PRK01172 ski2-like helicase; P 100.0 1.4E-41 2.9E-46 419.9 43.2 449 264-790 5-505 (674)
23 PRK11776 ATP-dependent RNA hel 100.0 1.7E-42 3.7E-47 410.4 31.1 330 265-687 9-351 (460)
24 PRK04837 ATP-dependent RNA hel 100.0 4.1E-42 8.9E-47 402.7 30.6 335 264-687 12-364 (423)
25 PRK10590 ATP-dependent RNA hel 100.0 9.5E-42 2.1E-46 402.2 30.1 336 263-687 4-354 (456)
26 PRK11634 ATP-dependent RNA hel 100.0 1.6E-41 3.4E-46 409.0 32.4 331 264-687 10-354 (629)
27 PRK02362 ski2-like helicase; P 100.0 2.5E-40 5.5E-45 411.2 42.3 455 264-790 5-529 (737)
28 PLN00206 DEAD-box ATP-dependen 100.0 1.4E-41 3.1E-46 405.3 29.2 350 234-687 112-477 (518)
29 KOG0343 RNA Helicase [RNA proc 100.0 7.7E-42 1.7E-46 373.7 23.2 344 261-688 70-425 (758)
30 PRK04537 ATP-dependent RNA hel 100.0 6.9E-41 1.5E-45 401.6 32.3 333 265-686 14-365 (572)
31 PRK11192 ATP-dependent RNA hel 100.0 5.7E-41 1.2E-45 394.9 30.6 339 262-688 3-355 (434)
32 KOG0345 ATP-dependent RNA heli 100.0 1.3E-41 2.8E-46 367.2 22.7 345 269-702 15-384 (567)
33 KOG0342 ATP-dependent RNA heli 100.0 2.5E-41 5.4E-46 367.9 24.9 343 259-686 81-438 (543)
34 KOG0339 ATP-dependent RNA heli 100.0 1.3E-41 2.9E-46 368.1 18.1 370 216-688 196-578 (731)
35 KOG0340 ATP-dependent RNA heli 100.0 7.5E-41 1.6E-45 349.6 21.3 339 262-686 9-362 (442)
36 PRK01297 ATP-dependent RNA hel 100.0 9.2E-40 2E-44 388.0 31.9 331 267-686 94-443 (475)
37 KOG0328 Predicted ATP-dependen 100.0 6.6E-41 1.4E-45 339.2 17.7 335 245-688 25-376 (400)
38 PRK00254 ski2-like helicase; P 100.0 1.3E-38 2.9E-43 394.8 39.0 456 263-792 4-523 (720)
39 PTZ00424 helicase 45; Provisio 100.0 2.7E-39 5.9E-44 377.8 28.3 339 260-688 28-377 (401)
40 KOG0348 ATP-dependent RNA heli 100.0 7.1E-39 1.5E-43 349.7 25.3 358 280-689 157-560 (708)
41 KOG0341 DEAD-box protein abstr 100.0 4.4E-40 9.4E-45 345.5 12.6 349 233-687 160-530 (610)
42 TIGR03817 DECH_helic helicase/ 100.0 1.2E-37 2.6E-42 382.7 27.4 341 270-684 24-385 (742)
43 KOG0326 ATP-dependent RNA heli 100.0 2.5E-38 5.3E-43 325.5 15.4 314 279-686 104-430 (459)
44 KOG0347 RNA helicase [RNA proc 100.0 5.4E-38 1.2E-42 343.8 14.2 376 261-712 182-584 (731)
45 TIGR00614 recQ_fam ATP-depende 100.0 2.5E-35 5.5E-40 348.6 29.2 309 282-688 11-336 (470)
46 COG1202 Superfamily II helicas 100.0 3.2E-35 6.9E-40 323.3 26.3 457 264-817 198-704 (830)
47 PRK13767 ATP-dependent helicas 100.0 8.1E-35 1.7E-39 364.8 31.4 395 282-745 32-476 (876)
48 PLN03137 ATP-dependent DNA hel 100.0 4.3E-35 9.3E-40 355.4 27.8 320 267-688 444-790 (1195)
49 KOG0332 ATP-dependent RNA heli 100.0 2E-35 4.3E-40 310.6 18.7 341 245-685 88-443 (477)
50 KOG0334 RNA helicase [RNA proc 100.0 7.5E-36 1.6E-40 353.0 16.3 339 261-686 366-721 (997)
51 PRK11057 ATP-dependent DNA hel 100.0 1.3E-34 2.7E-39 351.4 27.4 307 282-688 25-346 (607)
52 KOG0350 DEAD-box ATP-dependent 100.0 2.4E-34 5.3E-39 312.6 21.2 331 273-686 150-541 (620)
53 KOG0346 RNA helicase [RNA proc 100.0 3.8E-34 8.2E-39 306.5 21.3 340 261-686 20-411 (569)
54 COG1204 Superfamily II helicas 100.0 8E-33 1.7E-37 335.7 26.8 428 282-778 31-526 (766)
55 KOG0344 ATP-dependent RNA heli 100.0 3E-33 6.6E-38 312.3 20.6 356 232-686 121-496 (593)
56 TIGR01389 recQ ATP-dependent D 100.0 8.3E-33 1.8E-37 336.7 26.2 303 282-688 13-334 (591)
57 COG1201 Lhr Lhr-like helicases 100.0 2.8E-32 6E-37 325.7 29.1 386 269-743 10-438 (814)
58 TIGR00580 mfd transcription-re 100.0 4.1E-32 8.9E-37 336.2 30.1 307 273-685 442-770 (926)
59 PRK09751 putative ATP-dependen 100.0 1.3E-32 2.9E-37 348.2 23.9 313 302-679 1-379 (1490)
60 TIGR02621 cas3_GSU0051 CRISPR- 100.0 6.6E-32 1.4E-36 324.4 26.9 347 280-721 13-428 (844)
61 COG1111 MPH1 ERCC4-like helica 100.0 8.5E-32 1.8E-36 296.3 24.6 374 282-685 15-481 (542)
62 KOG0327 Translation initiation 100.0 5.7E-33 1.2E-37 295.8 14.7 339 246-690 25-375 (397)
63 PRK10917 ATP-dependent DNA hel 100.0 4.8E-31 1E-35 323.4 30.2 301 279-683 258-587 (681)
64 PRK10689 transcription-repair 100.0 2.8E-31 6.1E-36 335.6 27.8 303 277-684 595-918 (1147)
65 KOG4284 DEAD box protein [Tran 100.0 8.4E-32 1.8E-36 299.2 20.0 344 245-686 23-380 (980)
66 TIGR00643 recG ATP-dependent D 100.0 8.1E-31 1.8E-35 319.5 25.6 300 282-683 235-564 (630)
67 KOG0354 DEAD-box like helicase 100.0 1.9E-30 4E-35 302.3 25.6 383 278-685 58-529 (746)
68 KOG0337 ATP-dependent RNA heli 100.0 8.7E-31 1.9E-35 279.7 15.7 321 277-686 38-369 (529)
69 TIGR01587 cas3_core CRISPR-ass 100.0 5.7E-30 1.2E-34 294.4 23.4 299 299-686 1-337 (358)
70 KOG0921 Dosage compensation co 100.0 9.3E-32 2E-36 307.8 0.3 583 261-875 385-969 (1282)
71 PHA02558 uvsW UvsW helicase; P 100.0 5.4E-28 1.2E-32 287.6 28.8 326 280-677 112-443 (501)
72 TIGR03158 cas3_cyano CRISPR-as 100.0 2.4E-28 5.2E-33 278.2 23.3 306 286-671 1-357 (357)
73 PRK09401 reverse gyrase; Revie 100.0 2.4E-28 5.2E-33 309.7 24.5 300 272-671 70-429 (1176)
74 PRK13766 Hef nuclease; Provisi 100.0 1.4E-27 3.1E-32 300.8 27.8 375 280-686 13-480 (773)
75 KOG0952 DNA/RNA helicase MER3/ 100.0 3.3E-27 7.1E-32 276.7 25.6 480 285-831 113-682 (1230)
76 COG0514 RecQ Superfamily II DN 100.0 1.7E-27 3.7E-32 275.3 21.2 301 286-688 21-340 (590)
77 COG1205 Distinct helicase fami 99.9 1.7E-27 3.7E-32 293.5 19.4 337 273-684 61-421 (851)
78 PRK14701 reverse gyrase; Provi 99.9 7.5E-27 1.6E-31 301.7 23.0 323 271-685 68-456 (1638)
79 TIGR01054 rgy reverse gyrase. 99.9 4.7E-26 1E-30 289.4 25.1 284 271-642 67-411 (1171)
80 TIGR03714 secA2 accessory Sec 99.9 1.3E-24 2.8E-29 259.3 30.1 349 277-686 63-538 (762)
81 PRK12898 secA preprotein trans 99.9 9.4E-25 2E-29 257.7 27.6 106 554-686 473-587 (656)
82 KOG0947 Cytoplasmic exosomal R 99.9 1.6E-25 3.5E-30 259.3 18.2 376 279-685 294-723 (1248)
83 PRK09200 preprotein translocas 99.9 3E-24 6.5E-29 258.8 28.9 366 279-686 75-542 (790)
84 KOG0948 Nuclear exosomal RNA h 99.9 1.5E-25 3.2E-30 253.7 16.2 361 281-685 128-539 (1041)
85 KOG0951 RNA helicase BRR2, DEA 99.9 5.7E-24 1.2E-28 252.0 29.5 447 283-798 310-849 (1674)
86 TIGR00603 rad25 DNA repair hel 99.9 2.8E-24 6E-29 256.6 26.7 330 280-686 253-608 (732)
87 COG4581 Superfamily II RNA hel 99.9 2.4E-24 5.1E-29 261.0 21.3 375 278-684 115-536 (1041)
88 KOG0349 Putative DEAD-box RNA 99.9 1.1E-24 2.3E-29 232.7 15.8 303 331-684 287-614 (725)
89 KOG0352 ATP-dependent DNA heli 99.9 2.2E-24 4.8E-29 230.4 18.1 310 285-689 23-366 (641)
90 TIGR00963 secA preprotein tran 99.9 2.5E-23 5.4E-28 246.7 23.6 360 279-686 53-518 (745)
91 PRK09694 helicase Cas3; Provis 99.9 6.7E-23 1.4E-27 251.8 25.1 326 280-673 284-662 (878)
92 PRK05580 primosome assembly pr 99.9 3.8E-23 8.3E-28 252.7 21.9 317 281-680 143-544 (679)
93 PRK11448 hsdR type I restricti 99.9 1.3E-21 2.9E-26 247.1 33.3 387 281-711 412-846 (1123)
94 COG1061 SSL2 DNA or RNA helica 99.9 6.6E-22 1.4E-26 230.9 26.2 323 279-673 33-376 (442)
95 KOG0351 ATP-dependent DNA heli 99.9 6.8E-23 1.5E-27 250.6 18.6 308 284-689 266-596 (941)
96 KOG0329 ATP-dependent RNA heli 99.9 2.1E-22 4.4E-27 202.2 16.5 277 283-687 65-357 (387)
97 COG1200 RecG RecG-like helicas 99.9 2.2E-21 4.7E-26 223.7 23.9 303 279-685 259-591 (677)
98 KOG0950 DNA polymerase theta/e 99.9 6.7E-22 1.5E-26 232.0 18.0 358 267-686 208-612 (1008)
99 TIGR00595 priA primosomal prot 99.9 9.5E-22 2.1E-26 232.1 16.7 295 301-680 1-376 (505)
100 COG4098 comFA Superfamily II D 99.9 2.1E-20 4.4E-25 196.2 24.5 293 288-679 107-410 (441)
101 PRK04914 ATP-dependent helicas 99.9 6.3E-20 1.4E-24 227.0 26.1 120 541-684 480-604 (956)
102 COG1197 Mfd Transcription-repa 99.9 7.8E-20 1.7E-24 221.9 26.2 308 271-684 583-912 (1139)
103 KOG0353 ATP-dependent DNA heli 99.8 6.4E-20 1.4E-24 193.2 17.5 280 284-643 96-399 (695)
104 PRK13104 secA preprotein trans 99.8 1.5E-18 3.3E-23 208.8 28.3 126 278-409 76-213 (896)
105 cd00268 DEADc DEAD-box helicas 99.8 2.3E-18 5E-23 181.6 18.4 173 269-443 8-187 (203)
106 PRK12906 secA preprotein trans 99.8 2.2E-17 4.7E-22 198.2 23.8 116 543-685 428-553 (796)
107 PF00270 DEAD: DEAD/DEAH box h 99.8 8.3E-18 1.8E-22 171.7 17.0 157 284-446 1-167 (169)
108 PRK12904 preprotein translocas 99.8 8.7E-17 1.9E-21 193.8 24.9 367 279-685 76-573 (830)
109 COG1203 CRISPR-associated heli 99.7 1.1E-16 2.4E-21 198.0 22.4 313 282-683 195-548 (733)
110 PRK13107 preprotein translocas 99.7 4.1E-16 9E-21 187.3 24.6 126 278-409 76-213 (908)
111 COG4096 HsdR Type I site-speci 99.7 1.4E-15 3E-20 177.9 28.0 372 285-711 168-574 (875)
112 KOG0949 Predicted helicase, DE 99.7 1.9E-16 4.2E-21 184.9 20.5 163 281-450 510-682 (1330)
113 PF07717 OB_NTP_bind: Oligonuc 99.7 1.2E-17 2.5E-22 158.5 8.5 108 864-977 1-114 (114)
114 PRK12899 secA preprotein trans 99.7 3.2E-16 6.8E-21 188.4 22.1 121 283-409 93-226 (970)
115 PF04408 HA2: Helicase associa 99.7 1.4E-17 3.1E-22 153.8 7.2 92 736-827 1-102 (102)
116 TIGR00348 hsdR type I site-spe 99.6 2.2E-14 4.8E-19 175.8 23.6 346 284-676 240-638 (667)
117 PLN03142 Probable chromatin-re 99.6 8.5E-14 1.9E-18 173.4 25.4 120 541-687 476-601 (1033)
118 smart00847 HA2 Helicase associ 99.6 1.5E-15 3.2E-20 138.1 6.7 91 736-827 1-92 (92)
119 TIGR01407 dinG_rel DnaQ family 99.6 2.2E-13 4.8E-18 172.3 24.8 134 541-681 662-811 (850)
120 COG1110 Reverse gyrase [DNA re 99.5 6.3E-13 1.4E-17 157.9 24.1 283 271-641 71-418 (1187)
121 smart00487 DEXDc DEAD-like hel 99.5 2.5E-13 5.5E-18 141.6 16.8 156 280-441 6-171 (201)
122 KOG0953 Mitochondrial RNA heli 99.5 2.6E-13 5.7E-18 151.2 16.6 281 296-685 190-477 (700)
123 PRK12900 secA preprotein trans 99.5 3.2E-13 6.9E-18 163.2 15.2 119 541-686 584-712 (1025)
124 cd00046 DEXDc DEAD-like helica 99.5 7.2E-13 1.6E-17 129.9 14.3 137 298-440 1-144 (144)
125 TIGR00631 uvrb excinuclease AB 99.4 4.7E-13 1E-17 162.2 11.6 120 541-685 428-553 (655)
126 cd00079 HELICc Helicase superf 99.4 7.8E-13 1.7E-17 128.5 10.1 104 553-681 27-131 (131)
127 PF07652 Flavi_DEAD: Flaviviru 99.4 4.5E-12 9.7E-17 120.7 12.9 136 296-443 3-139 (148)
128 KOG4150 Predicted ATP-dependen 99.4 1.8E-12 3.9E-17 143.8 10.7 332 273-679 277-634 (1034)
129 TIGR02562 cas3_yersinia CRISPR 99.4 1E-10 2.3E-15 142.3 26.0 167 272-444 398-638 (1110)
130 PRK05298 excinuclease ABC subu 99.4 2.8E-12 6E-17 156.9 12.7 123 542-684 433-556 (652)
131 PF00271 Helicase_C: Helicase 99.4 6.2E-13 1.3E-17 116.9 4.9 72 584-673 6-77 (78)
132 PRK12326 preprotein translocas 99.3 1.4E-10 3.1E-15 137.0 25.0 124 278-409 74-209 (764)
133 COG1198 PriA Primosomal protei 99.3 1.3E-11 2.8E-16 148.4 15.3 155 280-448 196-367 (730)
134 PF04851 ResIII: Type III rest 99.3 9.1E-12 2E-16 128.7 12.3 147 281-441 2-183 (184)
135 PRK07246 bifunctional ATP-depe 99.3 2.6E-10 5.6E-15 142.6 25.7 157 541-710 636-815 (820)
136 PRK13103 secA preprotein trans 99.2 9E-10 2E-14 133.4 23.3 126 278-409 76-213 (913)
137 KOG1123 RNA polymerase II tran 99.2 2.3E-10 5.1E-15 126.0 15.4 296 281-674 301-635 (776)
138 COG0556 UvrB Helicase subunit 99.2 1E-09 2.2E-14 122.8 18.9 123 539-681 430-553 (663)
139 smart00490 HELICc helicase sup 99.2 3.8E-11 8.2E-16 106.1 5.9 79 570-673 3-81 (82)
140 KOG0951 RNA helicase BRR2, DEA 99.1 2.1E-10 4.5E-15 138.3 13.0 333 284-696 1145-1508(1674)
141 KOG0385 Chromatin remodeling c 99.1 3.5E-09 7.6E-14 122.7 18.2 363 282-686 167-600 (971)
142 PRK08074 bifunctional ATP-depe 99.1 1.4E-08 3.1E-13 129.4 25.7 164 541-710 740-924 (928)
143 PRK12903 secA preprotein trans 99.0 5.6E-08 1.2E-12 116.9 26.5 115 541-683 412-537 (925)
144 CHL00122 secA preprotein trans 99.0 3.3E-08 7.2E-13 119.6 21.9 126 278-409 70-207 (870)
145 PF02399 Herpes_ori_bp: Origin 98.9 4.7E-08 1E-12 116.9 20.8 320 295-685 47-388 (824)
146 KOG0384 Chromodomain-helicase 98.8 2.7E-07 5.9E-12 112.5 20.6 124 541-688 688-814 (1373)
147 PRK12902 secA preprotein trans 98.7 5.7E-07 1.2E-11 108.9 21.4 125 279-409 80-216 (939)
148 KOG0390 DNA repair protein, SN 98.7 1.7E-06 3.6E-11 104.2 25.1 159 283-450 239-424 (776)
149 COG4889 Predicted helicase [Ge 98.7 3.1E-08 6.6E-13 115.8 9.1 77 585-679 499-578 (1518)
150 PRK11747 dinG ATP-dependent DN 98.7 1.4E-06 3E-11 108.0 23.4 129 541-681 523-671 (697)
151 TIGR00604 rad3 DNA repair heli 98.7 3.6E-07 7.9E-12 114.0 17.5 132 541-675 510-663 (705)
152 KOG0387 Transcription-coupled 98.6 1.5E-06 3.2E-11 102.1 18.6 113 553-686 545-659 (923)
153 TIGR03117 cas_csf4 CRISPR-asso 98.6 4.5E-07 9.8E-12 108.9 14.2 62 288-352 7-68 (636)
154 COG1199 DinG Rad3-related DNA 98.5 4.9E-06 1.1E-10 103.7 22.4 131 541-681 467-614 (654)
155 PRK14873 primosome assembly pr 98.5 2E-06 4.4E-11 104.7 16.2 126 305-447 168-310 (665)
156 PF06862 DUF1253: Protein of u 98.5 3.2E-05 6.9E-10 88.7 24.0 122 544-687 290-417 (442)
157 PRK12901 secA preprotein trans 98.4 7.4E-06 1.6E-10 100.4 18.4 114 543-683 616-739 (1112)
158 PF00176 SNF2_N: SNF2 family N 98.3 5.6E-06 1.2E-10 92.7 13.1 134 296-440 24-172 (299)
159 KOG0392 SNF2 family DNA-depend 98.2 0.00011 2.5E-09 90.1 22.6 115 554-687 1340-1456(1549)
160 KOG1000 Chromatin remodeling p 98.2 0.00021 4.5E-09 80.2 22.6 96 541-643 474-576 (689)
161 KOG2340 Uncharacterized conser 98.0 8.3E-05 1.8E-09 83.9 14.3 339 276-686 210-669 (698)
162 PF13245 AAA_19: Part of AAA d 98.0 2.7E-05 5.8E-10 67.5 7.5 57 293-350 6-62 (76)
163 PF13604 AAA_30: AAA domain; P 97.9 4.7E-05 1E-09 79.5 10.0 122 283-439 2-130 (196)
164 COG0610 Type I site-specific r 97.9 0.0004 8.6E-09 88.8 19.1 135 298-440 274-413 (962)
165 PF13401 AAA_22: AAA domain; P 97.9 3.7E-05 8E-10 74.6 7.5 119 295-439 2-125 (131)
166 TIGR00596 rad1 DNA repair prot 97.8 9E-05 1.9E-09 92.0 12.2 67 375-442 7-74 (814)
167 KOG0389 SNF2 family DNA-depend 97.8 0.00045 9.7E-09 81.8 16.3 113 553-687 776-890 (941)
168 TIGR01447 recD exodeoxyribonuc 97.8 0.00043 9.4E-09 83.8 16.0 139 285-437 148-293 (586)
169 PF00448 SRP54: SRP54-type pro 97.7 0.00011 2.3E-09 76.5 9.1 126 298-444 2-129 (196)
170 PRK12723 flagellar biosynthesi 97.7 0.00021 4.6E-09 81.7 12.1 130 297-449 174-306 (388)
171 COG0653 SecA Preprotein transl 97.7 0.0024 5.2E-08 78.0 21.2 124 279-408 75-210 (822)
172 KOG0952 DNA/RNA helicase MER3/ 97.7 1.7E-05 3.6E-10 96.0 2.1 154 297-454 943-1108(1230)
173 PRK10875 recD exonuclease V su 97.6 0.00069 1.5E-08 82.2 15.5 137 284-438 154-300 (615)
174 PF02562 PhoH: PhoH-like prote 97.6 0.00025 5.4E-09 73.6 9.6 58 281-341 3-60 (205)
175 KOG1803 DNA helicase [Replicat 97.5 0.00025 5.3E-09 82.1 8.8 63 284-351 187-250 (649)
176 PF07517 SecA_DEAD: SecA DEAD- 97.5 0.00053 1.1E-08 74.2 10.9 124 278-409 73-208 (266)
177 PRK13889 conjugal transfer rel 97.5 0.012 2.6E-07 74.8 23.2 126 279-439 343-470 (988)
178 PRK14722 flhF flagellar biosyn 97.4 0.001 2.3E-08 75.5 12.2 126 294-444 134-261 (374)
179 smart00488 DEXDc2 DEAD-like he 97.4 0.00043 9.3E-09 76.8 8.8 71 282-352 8-83 (289)
180 smart00489 DEXDc3 DEAD-like he 97.4 0.00043 9.3E-09 76.8 8.8 71 282-352 8-83 (289)
181 PF09848 DUF2075: Uncharacteri 97.4 0.00046 1E-08 79.1 8.6 91 298-408 2-93 (352)
182 PRK10536 hypothetical protein; 97.4 0.00035 7.5E-09 74.5 6.9 61 279-342 56-116 (262)
183 COG1419 FlhF Flagellar GTP-bin 97.4 0.002 4.3E-08 72.6 13.0 129 296-448 202-331 (407)
184 PRK11889 flhF flagellar biosyn 97.4 0.0018 3.9E-08 73.0 12.6 124 297-443 241-365 (436)
185 KOG0386 Chromatin remodeling c 97.3 0.00066 1.4E-08 82.4 9.7 111 552-687 724-840 (1157)
186 PRK05703 flhF flagellar biosyn 97.3 0.0082 1.8E-07 70.1 18.7 127 296-446 220-348 (424)
187 PRK15483 type III restriction- 97.3 0.001 2.3E-08 82.8 11.6 137 298-442 60-240 (986)
188 TIGR01448 recD_rel helicase, p 97.3 0.0014 3.1E-08 81.7 12.5 128 278-439 319-452 (720)
189 COG0553 HepA Superfamily II DN 97.2 0.0071 1.5E-07 78.4 18.2 110 556-687 713-824 (866)
190 PF12340 DUF3638: Protein of u 97.2 0.0028 6.2E-08 66.4 11.2 111 274-390 15-145 (229)
191 PF05729 NACHT: NACHT domain 97.1 0.0017 3.7E-08 65.4 8.7 63 401-463 84-153 (166)
192 PRK12726 flagellar biosynthesi 97.1 0.003 6.5E-08 71.1 10.9 129 296-448 205-335 (407)
193 cd00009 AAA The AAA+ (ATPases 97.0 0.0058 1.3E-07 59.7 11.3 33 288-321 8-42 (151)
194 PF13086 AAA_11: AAA domain; P 97.0 0.0014 3.1E-08 70.2 7.5 69 284-352 3-75 (236)
195 PRK06526 transposase; Provisio 96.9 0.0027 5.7E-08 69.0 8.6 29 292-320 93-121 (254)
196 TIGR02768 TraA_Ti Ti-type conj 96.9 0.0057 1.2E-07 76.7 12.4 124 279-437 349-474 (744)
197 PF00580 UvrD-helicase: UvrD/R 96.9 0.0023 5E-08 72.0 8.2 70 284-356 2-71 (315)
198 cd06007 R3H_DEXH_helicase R3H 96.9 0.0025 5.3E-08 51.9 5.8 47 123-169 6-52 (59)
199 PF05970 PIF1: PIF1-like helic 96.9 0.0037 8E-08 72.0 9.6 111 285-420 4-122 (364)
200 PF13872 AAA_34: P-loop contai 96.8 0.0081 1.8E-07 65.4 11.0 140 297-440 62-220 (303)
201 PRK12724 flagellar biosynthesi 96.8 0.0082 1.8E-07 68.8 11.6 128 296-450 222-357 (432)
202 PRK12727 flagellar biosynthesi 96.8 0.023 5E-07 66.8 15.4 127 294-444 347-473 (559)
203 PF13307 Helicase_C_2: Helicas 96.8 0.0014 3.1E-08 66.5 4.9 121 552-679 7-143 (167)
204 PRK13826 Dtr system oriT relax 96.8 0.12 2.7E-06 66.4 22.6 126 279-439 378-505 (1102)
205 PRK14723 flhF flagellar biosyn 96.8 0.041 8.9E-07 67.8 17.7 125 297-446 185-311 (767)
206 cd02640 R3H_NRF R3H domain of 96.7 0.004 8.6E-08 50.9 5.9 48 122-169 5-53 (60)
207 PRK08181 transposase; Validate 96.7 0.0073 1.6E-07 66.0 9.5 115 293-451 102-219 (269)
208 PRK14974 cell division protein 96.6 0.0092 2E-07 67.2 10.1 124 297-443 140-267 (336)
209 PRK04296 thymidine kinase; Pro 96.6 0.0097 2.1E-07 61.8 9.5 98 297-424 2-102 (190)
210 PHA03333 putative ATPase subun 96.6 0.056 1.2E-06 64.9 16.4 141 296-451 186-343 (752)
211 TIGR00376 DNA helicase, putati 96.5 0.006 1.3E-07 75.0 8.5 66 282-352 157-223 (637)
212 PRK14721 flhF flagellar biosyn 96.5 0.022 4.7E-07 66.0 12.1 128 295-446 189-317 (420)
213 KOG1802 RNA helicase nonsense 96.4 0.0077 1.7E-07 70.3 7.5 66 283-352 411-476 (935)
214 PRK06731 flhF flagellar biosyn 96.3 0.029 6.3E-07 61.3 11.3 124 296-444 74-200 (270)
215 KOG4439 RNA polymerase II tran 96.3 0.28 6E-06 58.4 19.4 122 540-685 733-858 (901)
216 PRK06835 DNA replication prote 96.1 0.02 4.2E-07 64.6 9.0 115 296-449 182-297 (329)
217 PRK07952 DNA replication prote 96.1 0.052 1.1E-06 58.5 11.6 115 298-451 100-215 (244)
218 PRK07003 DNA polymerase III su 96.0 0.04 8.7E-07 67.2 11.4 50 386-437 107-156 (830)
219 TIGR03499 FlhF flagellar biosy 96.0 0.11 2.3E-06 57.6 13.9 89 296-407 193-281 (282)
220 PF01695 IstB_IS21: IstB-like 96.0 0.0083 1.8E-07 61.5 4.7 119 292-452 42-161 (178)
221 PRK14949 DNA polymerase III su 95.9 0.021 4.5E-07 70.9 8.7 42 393-436 114-155 (944)
222 KOG1002 Nucleotide excision re 95.9 0.044 9.5E-07 62.0 10.4 144 280-440 182-354 (791)
223 PF05127 Helicase_RecD: Helica 95.9 0.0018 3.8E-08 65.6 -0.4 117 301-441 1-124 (177)
224 PF13173 AAA_14: AAA domain 95.9 0.025 5.4E-07 54.7 7.7 26 296-321 1-26 (128)
225 PRK06995 flhF flagellar biosyn 95.9 0.082 1.8E-06 62.2 12.9 127 296-446 255-382 (484)
226 PRK09112 DNA polymerase III su 95.8 0.053 1.1E-06 61.8 10.9 140 287-437 32-178 (351)
227 KOG0391 SNF2 family DNA-depend 95.8 0.049 1.1E-06 67.4 10.9 114 552-687 1274-1389(1958)
228 smart00382 AAA ATPases associa 95.8 0.022 4.9E-07 54.9 6.9 41 297-342 2-42 (148)
229 PRK07764 DNA polymerase III su 95.7 0.038 8.3E-07 69.5 10.0 44 392-437 114-157 (824)
230 cd02641 R3H_Smubp-2_like R3H d 95.7 0.029 6.3E-07 46.0 6.0 49 121-169 4-53 (60)
231 COG3587 Restriction endonuclea 95.7 0.055 1.2E-06 65.5 10.6 52 611-680 483-537 (985)
232 PRK07994 DNA polymerase III su 95.7 0.038 8.2E-07 67.3 9.5 49 386-436 107-155 (647)
233 PRK06893 DNA replication initi 95.7 0.027 6E-07 60.3 7.4 47 396-444 89-138 (229)
234 PRK05642 DNA replication initi 95.6 0.027 5.9E-07 60.5 7.1 16 298-313 46-61 (234)
235 PRK12323 DNA polymerase III su 95.5 0.079 1.7E-06 63.8 11.2 49 387-437 113-161 (700)
236 PRK08727 hypothetical protein; 95.5 0.028 6E-07 60.5 6.9 17 298-314 42-58 (233)
237 PF03354 Terminase_1: Phage Te 95.5 0.038 8.1E-07 66.2 8.7 149 285-440 1-164 (477)
238 PHA02533 17 large terminase pr 95.5 0.19 4.1E-06 60.5 14.5 147 280-440 57-210 (534)
239 PRK14961 DNA polymerase III su 95.5 0.066 1.4E-06 61.7 10.4 50 386-437 107-156 (363)
240 PRK10416 signal recognition pa 95.5 0.11 2.3E-06 58.5 11.7 126 296-444 113-248 (318)
241 PF05621 TniB: Bacterial TniB 95.4 0.062 1.3E-06 58.8 9.1 119 298-436 62-186 (302)
242 TIGR03015 pepcterm_ATPase puta 95.4 0.066 1.4E-06 58.9 9.6 21 297-317 43-63 (269)
243 PRK14956 DNA polymerase III su 95.4 0.043 9.4E-07 64.2 8.3 42 394-439 117-158 (484)
244 PRK08903 DnaA regulatory inact 95.4 0.064 1.4E-06 57.4 9.0 22 296-317 41-62 (227)
245 PTZ00112 origin recognition co 95.3 0.19 4.1E-06 62.1 13.5 28 397-424 868-896 (1164)
246 PRK14952 DNA polymerase III su 95.3 0.1 2.2E-06 63.3 11.3 49 387-437 107-155 (584)
247 PRK09183 transposase/IS protei 95.3 0.23 5E-06 54.2 13.2 27 294-320 99-125 (259)
248 PRK08116 hypothetical protein; 95.3 0.074 1.6E-06 58.4 9.3 27 297-324 114-140 (268)
249 PRK14958 DNA polymerase III su 95.2 0.072 1.6E-06 63.8 9.8 47 388-436 109-155 (509)
250 TIGR03420 DnaA_homol_Hda DnaA 95.2 0.091 2E-06 56.1 9.8 25 295-319 36-60 (226)
251 PTZ00146 fibrillarin; Provisio 95.2 0.029 6.2E-07 61.4 5.8 12 397-408 201-212 (293)
252 PRK14964 DNA polymerase III su 95.2 0.063 1.4E-06 63.5 8.8 49 387-437 105-153 (491)
253 PRK09111 DNA polymerase III su 95.2 0.1 2.2E-06 63.5 10.8 50 386-437 120-169 (598)
254 KOG0989 Replication factor C, 95.1 0.039 8.5E-07 59.5 6.3 121 286-438 40-167 (346)
255 PRK14951 DNA polymerase III su 95.1 0.069 1.5E-06 65.0 9.3 67 386-455 112-178 (618)
256 PRK08691 DNA polymerase III su 95.1 0.07 1.5E-06 64.9 9.1 44 392-437 113-156 (709)
257 PRK08084 DNA replication initi 95.1 0.047 1E-06 58.8 7.0 20 296-315 44-63 (235)
258 PF13177 DNA_pol3_delta2: DNA 95.1 0.089 1.9E-06 53.1 8.5 53 385-439 89-141 (162)
259 PRK07471 DNA polymerase III su 95.1 0.17 3.7E-06 58.0 11.7 141 287-439 28-180 (365)
260 PRK11773 uvrD DNA-dependent he 95.0 0.086 1.9E-06 66.5 10.1 106 283-409 10-119 (721)
261 TIGR02760 TraI_TIGR conjugativ 95.0 0.13 2.9E-06 70.9 12.4 138 280-439 427-566 (1960)
262 PRK14957 DNA polymerase III su 95.0 0.11 2.3E-06 62.5 10.1 50 386-437 107-156 (546)
263 PRK05707 DNA polymerase III su 94.9 0.092 2E-06 59.3 9.0 134 282-436 3-142 (328)
264 PRK00771 signal recognition pa 94.9 0.22 4.7E-06 58.4 12.0 125 297-443 95-220 (437)
265 PRK00149 dnaA chromosomal repl 94.9 0.15 3.2E-06 60.7 10.9 37 298-337 149-185 (450)
266 COG3421 Uncharacterized protei 94.8 0.2 4.4E-06 58.4 11.3 145 302-449 2-176 (812)
267 TIGR00064 ftsY signal recognit 94.8 0.14 3.1E-06 56.2 10.0 126 296-444 71-206 (272)
268 PRK12377 putative replication 94.8 0.14 3.1E-06 55.3 9.7 27 296-323 100-126 (248)
269 PRK11331 5-methylcytosine-spec 94.8 0.12 2.6E-06 59.9 9.6 31 286-316 183-213 (459)
270 TIGR01425 SRP54_euk signal rec 94.8 0.19 4.1E-06 58.3 11.2 123 298-441 101-225 (429)
271 PRK14960 DNA polymerase III su 94.7 0.12 2.6E-06 62.5 9.5 32 989-1020 611-642 (702)
272 COG1474 CDC6 Cdc6-related prot 94.7 0.16 3.5E-06 58.2 10.3 113 299-436 44-160 (366)
273 PHA03368 DNA packaging termina 94.7 0.32 7E-06 58.4 12.8 145 289-450 247-400 (738)
274 TIGR01075 uvrD DNA helicase II 94.7 0.12 2.6E-06 65.2 10.1 106 283-409 5-114 (715)
275 PRK12402 replication factor C 94.7 0.12 2.7E-06 58.7 9.4 32 288-319 25-58 (337)
276 PRK06921 hypothetical protein; 94.6 0.14 3E-06 56.2 8.9 27 296-323 116-142 (266)
277 PRK10867 signal recognition pa 94.5 0.27 5.8E-06 57.4 11.6 126 298-443 101-228 (433)
278 TIGR02782 TrbB_P P-type conjug 94.5 0.082 1.8E-06 58.9 7.0 53 288-343 123-175 (299)
279 PRK14969 DNA polymerase III su 94.4 0.15 3.2E-06 61.5 9.7 50 386-437 107-156 (527)
280 TIGR02785 addA_Gpos recombinat 94.4 0.076 1.6E-06 70.7 7.8 135 284-423 3-140 (1232)
281 PRK11054 helD DNA helicase IV; 94.4 0.13 2.7E-06 63.9 9.2 116 271-408 185-302 (684)
282 TIGR02881 spore_V_K stage V sp 94.4 0.22 4.7E-06 54.6 10.2 21 297-317 42-62 (261)
283 TIGR01074 rep ATP-dependent DN 94.4 0.16 3.5E-06 63.7 10.2 107 284-410 3-113 (664)
284 PRK00411 cdc6 cell division co 94.3 0.23 5E-06 58.0 10.8 22 297-318 55-76 (394)
285 PRK13833 conjugal transfer pro 94.3 0.076 1.6E-06 59.5 6.3 55 286-343 132-187 (323)
286 TIGR00959 ffh signal recogniti 94.2 0.29 6.2E-06 57.2 11.1 126 298-443 100-227 (428)
287 TIGR00362 DnaA chromosomal rep 94.2 0.22 4.7E-06 58.4 10.3 37 298-337 137-173 (405)
288 PTZ00146 fibrillarin; Provisio 94.2 0.071 1.5E-06 58.4 5.6 15 300-314 135-149 (293)
289 PRK14086 dnaA chromosomal repl 94.1 0.46 9.9E-06 57.5 12.7 36 298-336 315-350 (617)
290 PRK14959 DNA polymerase III su 94.1 0.25 5.3E-06 60.0 10.3 40 385-426 106-145 (624)
291 TIGR00678 holB DNA polymerase 94.1 0.31 6.8E-06 50.4 10.0 50 387-439 85-134 (188)
292 cd01120 RecA-like_NTPases RecA 94.1 0.2 4.4E-06 49.9 8.4 24 299-322 1-24 (165)
293 PRK14962 DNA polymerase III su 94.0 0.3 6.5E-06 58.0 10.9 28 292-319 28-58 (472)
294 PRK08769 DNA polymerase III su 94.0 0.29 6.3E-06 54.9 10.0 53 385-439 100-152 (319)
295 PRK14965 DNA polymerase III su 93.9 0.22 4.8E-06 60.8 9.8 50 386-437 107-156 (576)
296 PRK14087 dnaA chromosomal repl 93.9 0.29 6.3E-06 57.9 10.5 46 298-347 142-187 (450)
297 PRK06645 DNA polymerase III su 93.9 0.52 1.1E-05 56.3 12.5 39 386-426 116-154 (507)
298 PRK10919 ATP-dependent DNA hel 93.8 0.12 2.7E-06 64.3 7.6 108 283-409 3-113 (672)
299 COG1444 Predicted P-loop ATPas 93.8 0.42 9.1E-06 58.6 11.7 123 298-442 232-358 (758)
300 PRK14712 conjugal transfer nic 93.8 0.34 7.4E-06 64.5 11.6 125 281-439 834-967 (1623)
301 TIGR02928 orc1/cdc6 family rep 93.7 0.32 7E-06 56.1 10.4 24 298-322 41-64 (365)
302 PRK14963 DNA polymerase III su 93.7 0.24 5.2E-06 59.3 9.3 47 387-435 105-151 (504)
303 PRK08939 primosomal protein Dn 93.7 0.34 7.4E-06 54.2 10.0 113 296-449 155-269 (306)
304 PRK07940 DNA polymerase III su 93.7 0.31 6.7E-06 56.4 9.9 52 386-440 105-156 (394)
305 PRK14088 dnaA chromosomal repl 93.7 0.21 4.5E-06 59.0 8.7 38 298-338 131-168 (440)
306 COG2804 PulE Type II secretory 93.6 0.19 4.1E-06 58.5 7.9 38 281-318 240-279 (500)
307 PF00004 AAA: ATPase family as 93.6 0.076 1.6E-06 51.1 4.2 16 300-315 1-16 (132)
308 PHA02544 44 clamp loader, smal 93.6 0.31 6.6E-06 55.1 9.7 28 290-317 33-63 (316)
309 COG1435 Tdk Thymidine kinase [ 93.6 0.32 7E-06 49.5 8.5 125 297-450 4-128 (201)
310 PRK12422 chromosomal replicati 93.5 0.19 4.2E-06 59.2 8.1 35 298-337 142-176 (445)
311 TIGR01547 phage_term_2 phage t 93.5 0.35 7.5E-06 56.6 10.2 135 298-442 2-142 (396)
312 PRK13894 conjugal transfer ATP 93.5 0.12 2.5E-06 58.1 5.9 53 287-342 137-190 (319)
313 cd01124 KaiC KaiC is a circadi 93.5 0.11 2.4E-06 53.5 5.4 47 299-351 1-47 (187)
314 COG3973 Superfamily I DNA and 93.4 0.43 9.3E-06 56.1 10.2 68 286-355 216-284 (747)
315 PF00437 T2SE: Type II/IV secr 93.3 0.084 1.8E-06 58.2 4.4 48 290-342 120-167 (270)
316 PRK13709 conjugal transfer nic 93.3 0.56 1.2E-05 63.4 12.6 128 280-439 965-1099(1747)
317 PRK13851 type IV secretion sys 93.3 0.1 2.3E-06 59.1 5.2 48 290-343 155-202 (344)
318 KOG1805 DNA replication helica 93.3 0.13 2.8E-06 63.3 6.0 66 283-353 670-736 (1100)
319 TIGR02760 TraI_TIGR conjugativ 93.3 0.35 7.6E-06 66.9 11.1 125 280-439 1017-1149(1960)
320 PRK14955 DNA polymerase III su 93.3 0.44 9.5E-06 55.6 10.4 51 386-439 115-165 (397)
321 PRK06964 DNA polymerase III su 93.3 0.29 6.3E-06 55.4 8.6 59 378-438 112-170 (342)
322 cd03115 SRP The signal recogni 93.3 0.61 1.3E-05 47.5 10.4 46 397-443 81-127 (173)
323 PRK14950 DNA polymerase III su 93.2 0.34 7.3E-06 59.5 9.8 50 387-439 109-158 (585)
324 COG0470 HolB ATPase involved i 93.2 0.29 6.2E-06 55.4 8.7 52 384-437 95-146 (325)
325 COG1702 PhoH Phosphate starvat 93.2 0.14 3E-06 56.5 5.7 56 280-338 126-181 (348)
326 PRK05563 DNA polymerase III su 93.2 0.24 5.1E-06 60.3 8.3 39 386-426 107-145 (559)
327 PF05496 RuvB_N: Holliday junc 93.2 0.13 2.9E-06 53.8 5.2 17 299-315 52-68 (233)
328 PRK13900 type IV secretion sys 93.1 0.11 2.5E-06 58.6 5.1 48 290-343 153-200 (332)
329 TIGR02880 cbbX_cfxQ probable R 93.1 1.1 2.4E-05 49.6 12.8 21 297-317 58-78 (284)
330 PRK05896 DNA polymerase III su 93.0 0.21 4.6E-06 60.2 7.4 50 386-437 107-156 (605)
331 PF00308 Bac_DnaA: Bacterial d 92.9 0.47 1E-05 50.4 9.1 104 299-442 36-142 (219)
332 KOG0388 SNF2 family DNA-depend 92.8 0.56 1.2E-05 55.7 10.0 114 552-687 1042-1156(1185)
333 PRK08451 DNA polymerase III su 92.8 0.51 1.1E-05 56.6 10.0 43 393-437 112-154 (535)
334 PRK07133 DNA polymerase III su 92.8 0.58 1.2E-05 57.8 10.7 52 385-439 105-156 (725)
335 COG4962 CpaF Flp pilus assembl 92.7 0.14 3E-06 56.7 4.9 52 286-343 161-213 (355)
336 KOG0391 SNF2 family DNA-depend 92.7 0.39 8.4E-06 60.0 8.9 122 284-409 617-748 (1958)
337 cd02639 R3H_RRM R3H domain of 92.7 0.22 4.7E-06 40.8 4.8 37 133-169 17-53 (60)
338 PLN03025 replication factor C 92.6 0.57 1.2E-05 53.0 9.9 21 298-318 35-55 (319)
339 PRK14948 DNA polymerase III su 92.6 0.49 1.1E-05 58.1 10.0 48 386-435 109-156 (620)
340 PHA00729 NTP-binding motif con 92.6 0.36 7.9E-06 51.0 7.6 18 299-316 19-36 (226)
341 KOG1132 Helicase of the DEAD s 92.6 0.23 4.9E-06 60.7 6.7 36 373-409 220-258 (945)
342 TIGR03345 VI_ClpV1 type VI sec 92.5 0.54 1.2E-05 60.1 10.6 120 299-449 598-727 (852)
343 PRK06871 DNA polymerase III su 92.5 0.62 1.4E-05 52.4 9.8 51 385-437 94-144 (325)
344 PTZ00293 thymidine kinase; Pro 92.5 0.4 8.6E-06 50.1 7.6 39 296-339 3-41 (211)
345 cd02646 R3H_G-patch R3H domain 92.5 0.32 7E-06 39.7 5.5 48 121-169 4-51 (58)
346 COG4626 Phage terminase-like p 92.5 0.78 1.7E-05 54.1 10.7 149 281-438 60-223 (546)
347 PRK09087 hypothetical protein; 92.4 0.58 1.3E-05 50.0 9.0 57 400-459 89-152 (226)
348 TIGR01073 pcrA ATP-dependent D 92.4 0.33 7.1E-06 61.5 8.3 107 283-409 5-114 (726)
349 COG2256 MGS1 ATPase related to 92.3 0.44 9.5E-06 53.7 8.1 26 292-317 41-68 (436)
350 PRK14970 DNA polymerase III su 92.3 0.43 9.3E-06 55.2 8.6 28 290-317 29-59 (367)
351 TIGR02397 dnaX_nterm DNA polym 92.3 0.61 1.3E-05 53.5 9.8 49 385-435 104-152 (355)
352 COG1484 DnaC DNA replication p 92.2 1 2.3E-05 48.9 10.8 118 291-451 99-219 (254)
353 PRK06620 hypothetical protein; 92.2 0.25 5.4E-06 52.3 5.9 38 398-440 85-122 (214)
354 PRK00440 rfc replication facto 92.1 0.99 2.2E-05 50.8 11.2 18 299-316 40-57 (319)
355 CHL00181 cbbX CbbX; Provisiona 92.1 1.4 3E-05 48.9 11.9 21 297-317 59-79 (287)
356 PRK14953 DNA polymerase III su 92.1 1.1 2.4E-05 53.5 11.7 49 385-435 106-154 (486)
357 PRK07399 DNA polymerase III su 92.0 1 2.2E-05 50.7 10.8 58 378-438 104-161 (314)
358 PRK11823 DNA repair protein Ra 91.9 0.23 4.9E-06 58.7 5.8 88 294-409 77-167 (446)
359 PF01637 Arch_ATPase: Archaeal 91.9 0.18 4E-06 53.6 4.6 27 288-314 9-37 (234)
360 PRK13342 recombination factor 91.8 0.75 1.6E-05 54.0 9.9 19 299-317 38-56 (413)
361 KOG2373 Predicted mitochondria 91.7 0.063 1.4E-06 58.4 0.7 36 288-323 264-299 (514)
362 PRK06067 flagellar accessory p 91.6 0.39 8.5E-06 51.6 6.7 27 296-322 24-50 (234)
363 PRK04195 replication factor C 91.1 1.3 2.8E-05 53.1 11.2 21 297-317 39-59 (482)
364 PF14617 CMS1: U3-containing 9 91.1 0.27 5.9E-06 52.8 4.8 79 330-408 126-211 (252)
365 PRK14954 DNA polymerase III su 91.0 0.68 1.5E-05 56.7 8.7 49 387-437 116-164 (620)
366 PF05876 Terminase_GpA: Phage 91.0 0.26 5.7E-06 59.8 5.1 67 283-353 17-86 (557)
367 PRK08533 flagellar accessory p 90.9 0.46 1E-05 50.9 6.3 29 294-322 21-49 (230)
368 PRK08058 DNA polymerase III su 90.9 0.97 2.1E-05 51.3 9.3 48 386-435 98-145 (329)
369 PRK06090 DNA polymerase III su 90.6 1.5 3.2E-05 49.3 10.2 52 385-438 95-146 (319)
370 PF13555 AAA_29: P-loop contai 90.6 0.17 3.6E-06 41.8 2.0 19 296-314 22-40 (62)
371 TIGR00767 rho transcription te 90.5 0.22 4.7E-06 56.9 3.5 28 294-322 165-192 (415)
372 PF01443 Viral_helicase1: Vira 90.5 0.16 3.5E-06 54.4 2.5 23 615-637 184-206 (234)
373 COG3267 ExeA Type II secretory 90.5 2.3 5E-05 45.3 10.7 60 290-354 43-103 (269)
374 PRK08699 DNA polymerase III su 90.4 1.1 2.3E-05 50.8 9.0 56 378-435 93-148 (325)
375 PRK10865 protein disaggregatio 90.3 1.7 3.7E-05 55.8 11.8 121 299-450 600-730 (857)
376 PF00931 NB-ARC: NB-ARC domain 90.3 0.37 8.1E-06 53.4 5.2 68 288-357 6-77 (287)
377 cd01130 VirB11-like_ATPase Typ 90.3 0.33 7.2E-06 50.2 4.4 26 290-315 18-43 (186)
378 cd01122 GP4d_helicase GP4d_hel 90.2 0.84 1.8E-05 50.2 7.9 34 290-323 23-56 (271)
379 cd01393 recA_like RecA is a b 90.1 0.41 8.9E-06 51.1 5.1 29 294-322 16-44 (226)
380 PRK06647 DNA polymerase III su 90.0 1.6 3.4E-05 53.2 10.5 47 390-439 111-157 (563)
381 TIGR02524 dot_icm_DotB Dot/Icm 89.9 0.53 1.2E-05 53.8 6.1 31 291-322 127-158 (358)
382 PRK05564 DNA polymerase III su 89.9 1.8 3.8E-05 48.9 10.2 48 389-439 84-131 (313)
383 cd03247 ABCC_cytochrome_bd The 89.8 0.76 1.7E-05 47.0 6.6 22 294-315 25-46 (178)
384 PRK07993 DNA polymerase III su 89.6 1.1 2.4E-05 50.7 8.4 58 378-437 88-145 (334)
385 PRK14971 DNA polymerase III su 89.6 1.7 3.6E-05 53.5 10.5 51 386-439 109-159 (614)
386 TIGR02788 VirB11 P-type DNA tr 89.5 0.46 9.9E-06 53.4 5.1 47 290-342 137-183 (308)
387 KOG2028 ATPase related to the 89.4 1 2.2E-05 49.8 7.4 55 397-458 221-279 (554)
388 cd01121 Sms Sms (bacterial rad 89.4 0.64 1.4E-05 53.5 6.3 88 294-409 79-169 (372)
389 TIGR02688 conserved hypothetic 89.3 0.56 1.2E-05 53.9 5.5 28 290-317 202-229 (449)
390 PF03237 Terminase_6: Terminas 89.3 2.9 6.2E-05 48.0 11.8 130 301-440 1-137 (384)
391 COG2805 PilT Tfp pilus assembl 89.1 0.24 5.2E-06 53.6 2.3 25 297-322 125-149 (353)
392 cd03221 ABCF_EF-3 ABCF_EF-3 E 88.9 1.5 3.2E-05 43.3 7.7 91 294-424 23-113 (144)
393 COG0552 FtsY Signal recognitio 88.8 2.3 5E-05 47.2 9.6 131 299-451 141-282 (340)
394 TIGR03877 thermo_KaiC_1 KaiC d 88.7 0.49 1.1E-05 51.0 4.5 51 295-351 19-69 (237)
395 KOG2004 Mitochondrial ATP-depe 88.7 3.4 7.5E-05 49.9 11.5 106 283-424 416-533 (906)
396 cd00544 CobU Adenosylcobinamid 88.6 1.1 2.4E-05 45.5 6.7 45 300-352 2-46 (169)
397 PF12846 AAA_10: AAA-like doma 88.6 0.52 1.1E-05 52.5 4.8 43 297-344 1-43 (304)
398 TIGR02655 circ_KaiC circadian 88.5 0.55 1.2E-05 56.3 5.1 94 294-405 260-360 (484)
399 cd00267 ABC_ATPase ABC (ATP-bi 88.5 0.74 1.6E-05 46.0 5.3 22 294-315 22-43 (157)
400 TIGR00631 uvrb excinuclease AB 88.4 1.3 2.8E-05 55.0 8.3 68 282-357 9-81 (655)
401 PRK13341 recombination factor 88.3 2.1 4.5E-05 53.6 10.1 19 299-317 54-72 (725)
402 COG1221 PspF Transcriptional r 88.3 3.1 6.8E-05 47.8 10.7 28 289-316 93-120 (403)
403 COG1110 Reverse gyrase [DNA re 88.3 0.83 1.8E-05 57.0 6.4 69 552-621 123-191 (1187)
404 COG1074 RecB ATP-dependent exo 88.2 0.78 1.7E-05 60.7 6.7 63 294-356 13-75 (1139)
405 TIGR00635 ruvB Holliday juncti 87.9 1.2 2.5E-05 50.0 7.0 18 298-315 31-48 (305)
406 COG0630 VirB11 Type IV secreto 87.7 0.61 1.3E-05 52.4 4.6 47 290-342 136-182 (312)
407 TIGR02525 plasmid_TraJ plasmid 87.7 0.82 1.8E-05 52.4 5.6 45 295-342 147-191 (372)
408 TIGR02639 ClpA ATP-dependent C 87.6 3.3 7E-05 52.5 11.5 19 297-315 203-221 (731)
409 COG0541 Ffh Signal recognition 87.6 3.2 6.9E-05 47.6 10.0 134 298-450 101-236 (451)
410 cd01131 PilT Pilus retraction 87.5 0.59 1.3E-05 48.9 4.1 39 299-341 3-41 (198)
411 cd03228 ABCC_MRP_Like The MRP 87.5 0.86 1.9E-05 46.3 5.2 22 294-315 25-46 (171)
412 cd01128 rho_factor Transcripti 87.4 0.41 8.8E-06 51.8 2.9 27 294-321 13-39 (249)
413 COG2255 RuvB Holliday junction 87.2 0.89 1.9E-05 49.0 5.1 24 383-409 91-114 (332)
414 KOG0741 AAA+-type ATPase [Post 87.2 1.9 4E-05 50.2 7.9 106 299-446 540-655 (744)
415 cd01129 PulE-GspE PulE/GspE Th 87.1 0.73 1.6E-05 50.5 4.7 50 287-341 68-119 (264)
416 PF05894 Podovirus_Gp16: Podov 87.1 5.3 0.00011 43.9 10.8 133 296-438 16-159 (333)
417 PHA00149 DNA encapsidation pro 87.0 5.5 0.00012 43.0 10.7 140 300-450 20-171 (331)
418 TIGR03689 pup_AAA proteasome A 86.9 1.6 3.4E-05 52.2 7.5 17 297-313 216-232 (512)
419 KOG2543 Origin recognition com 86.9 1.7 3.7E-05 48.7 7.2 149 280-446 7-164 (438)
420 PRK04841 transcriptional regul 86.8 1.6 3.4E-05 57.1 8.4 26 293-318 28-53 (903)
421 PRK05580 primosome assembly pr 86.6 1 2.2E-05 56.3 6.1 74 554-634 190-263 (679)
422 PRK05917 DNA polymerase III su 86.6 5 0.00011 44.3 10.7 53 385-439 82-134 (290)
423 TIGR02640 gas_vesic_GvpN gas v 86.4 0.77 1.7E-05 50.3 4.4 32 286-317 10-41 (262)
424 KOG2228 Origin recognition com 86.4 7.7 0.00017 43.0 11.6 129 296-442 48-183 (408)
425 cd03222 ABC_RNaseL_inhibitor T 86.1 2.1 4.6E-05 43.8 7.1 24 293-316 21-44 (177)
426 PRK06305 DNA polymerase III su 86.1 2.6 5.6E-05 50.0 8.8 32 289-320 28-62 (451)
427 PRK10917 ATP-dependent DNA hel 86.0 1.7 3.7E-05 54.5 7.7 80 553-635 309-389 (681)
428 TIGR00602 rad24 checkpoint pro 85.9 2.4 5.2E-05 52.1 8.6 23 296-318 109-131 (637)
429 PRK13764 ATPase; Provisional 85.8 1.1 2.5E-05 54.3 5.7 43 295-342 255-297 (602)
430 cd03246 ABCC_Protease_Secretio 85.7 0.8 1.7E-05 46.7 3.8 43 381-424 97-139 (173)
431 PLN02165 adenylate isopentenyl 85.7 0.17 3.8E-06 56.5 -1.1 22 295-316 41-62 (334)
432 PRK05973 replicative DNA helic 85.7 0.79 1.7E-05 49.1 3.8 60 287-352 54-113 (237)
433 cd03238 ABC_UvrA The excision 85.7 1.4 3E-05 45.1 5.5 24 294-317 18-41 (176)
434 TIGR00595 priA primosomal prot 85.6 1.9 4.1E-05 51.9 7.5 74 554-634 25-98 (505)
435 COG0542 clpA ATP-binding subun 85.4 4.2 9.1E-05 50.6 10.2 119 299-448 523-651 (786)
436 TIGR01420 pilT_fam pilus retra 85.3 1.1 2.4E-05 51.2 5.0 43 296-342 121-163 (343)
437 PF13207 AAA_17: AAA domain; P 85.2 0.65 1.4E-05 43.9 2.7 17 299-315 1-17 (121)
438 PRK00080 ruvB Holliday junctio 85.1 1.2 2.7E-05 50.5 5.4 18 298-315 52-69 (328)
439 PRK03992 proteasome-activating 84.9 2.3 4.9E-05 49.5 7.5 19 297-315 165-183 (389)
440 TIGR03819 heli_sec_ATPase heli 84.7 1.3 2.8E-05 50.4 5.2 51 286-342 166-217 (340)
441 TIGR02639 ClpA ATP-dependent C 84.7 2.6 5.7E-05 53.3 8.5 36 383-424 542-577 (731)
442 COG1126 GlnQ ABC-type polar am 84.4 0.49 1.1E-05 49.0 1.5 22 293-314 24-45 (240)
443 PRK05986 cob(I)alamin adenolsy 84.3 1.1 2.4E-05 46.1 4.0 41 295-340 20-60 (191)
444 COG0466 Lon ATP-dependent Lon 84.2 2.9 6.3E-05 50.7 7.9 124 283-441 328-474 (782)
445 COG2812 DnaX DNA polymerase II 84.2 1.4 3.1E-05 52.2 5.4 48 386-435 107-154 (515)
446 PRK10787 DNA-binding ATP-depen 84.2 2.7 5.9E-05 53.3 8.2 20 296-315 348-367 (784)
447 TIGR03346 chaperone_ClpB ATP-d 84.2 6.1 0.00013 51.0 11.6 60 384-449 657-726 (852)
448 PRK11034 clpA ATP-dependent Cl 84.1 2.6 5.7E-05 53.0 8.0 17 299-315 490-506 (758)
449 TIGR03117 cas_csf4 CRISPR-asso 84.1 6.6 0.00014 48.3 11.1 122 552-683 468-615 (636)
450 COG0513 SrmB Superfamily II DN 84.0 3.7 8E-05 49.6 9.0 89 541-635 84-180 (513)
451 TIGR01243 CDC48 AAA family ATP 84.0 2.4 5.1E-05 53.8 7.7 20 297-316 487-506 (733)
452 PRK10436 hypothetical protein; 83.9 1.3 2.8E-05 52.4 4.9 36 286-322 205-242 (462)
453 PRK11034 clpA ATP-dependent Cl 83.9 7.4 0.00016 49.1 11.8 18 297-314 207-224 (758)
454 PRK09376 rho transcription ter 83.9 1.6 3.5E-05 49.8 5.4 30 294-324 166-195 (416)
455 TIGR00708 cobA cob(I)alamin ad 83.7 2.2 4.8E-05 43.2 5.8 37 299-340 7-43 (173)
456 KOG1596 Fibrillarin and relate 83.7 2.6 5.6E-05 44.1 6.2 13 285-297 136-148 (317)
457 KOG1015 Transcription regulato 83.7 4 8.7E-05 50.5 8.7 119 552-685 1140-1277(1567)
458 cd03229 ABC_Class3 This class 83.3 0.4 8.7E-06 49.1 0.4 131 294-439 23-159 (178)
459 PF06745 KaiC: KaiC; InterPro 83.2 1.7 3.6E-05 46.4 5.1 29 296-324 18-46 (226)
460 COG0593 DnaA ATPase involved i 83.1 8.4 0.00018 44.5 10.8 15 297-311 113-127 (408)
461 COG2109 BtuR ATP:corrinoid ade 83.1 6.7 0.00015 39.9 8.8 39 298-341 29-67 (198)
462 PF13671 AAA_33: AAA domain; P 82.9 0.9 2E-05 44.3 2.7 19 299-317 1-19 (143)
463 PRK14873 primosome assembly pr 82.9 2.5 5.5E-05 52.3 7.1 76 553-634 187-262 (665)
464 TIGR01243 CDC48 AAA family ATP 82.9 3 6.5E-05 52.9 8.0 21 295-315 210-230 (733)
465 TIGR03878 thermo_KaiC_2 KaiC d 82.7 1.4 3.1E-05 48.1 4.4 28 295-322 34-61 (259)
466 cd03216 ABC_Carb_Monos_I This 82.7 2.2 4.8E-05 42.9 5.5 102 294-424 23-125 (163)
467 cd03282 ABC_MSH4_euk MutS4 hom 82.7 1.1 2.5E-05 46.9 3.5 27 296-322 28-54 (204)
468 KOG2036 Predicted P-loop ATPas 82.6 7 0.00015 46.9 9.9 132 289-442 264-413 (1011)
469 cd00984 DnaB_C DnaB helicase C 82.6 1.2 2.6E-05 48.1 3.7 33 292-324 8-40 (242)
470 COG3598 RepA RecA-family ATPas 82.5 4.7 0.0001 44.3 7.9 120 286-408 77-204 (402)
471 CHL00095 clpC Clp protease ATP 82.5 7.4 0.00016 50.0 11.3 57 384-446 601-667 (821)
472 CHL00176 ftsH cell division pr 82.5 4.6 0.0001 49.9 9.1 20 297-316 216-235 (638)
473 PF13481 AAA_25: AAA domain; P 82.4 2.6 5.7E-05 43.5 6.1 59 295-354 30-93 (193)
474 KOG0701 dsRNA-specific nucleas 82.4 0.83 1.8E-05 60.4 2.7 171 557-749 295-484 (1606)
475 TIGR02533 type_II_gspE general 82.4 1.4 3E-05 52.7 4.4 32 284-315 227-260 (486)
476 cd03227 ABC_Class2 ABC-type Cl 82.4 2.7 5.9E-05 42.2 6.0 26 297-322 21-46 (162)
477 TIGR03263 guanyl_kin guanylate 82.2 0.94 2E-05 46.3 2.6 20 297-316 1-20 (180)
478 COG1618 Predicted nucleotide k 82.2 4.6 0.0001 40.1 7.0 110 299-427 7-129 (179)
479 cd01127 TrwB Bacterial conjuga 82.1 1.3 2.8E-05 52.0 4.0 45 294-343 39-83 (410)
480 TIGR02538 type_IV_pilB type IV 82.0 1.5 3.3E-05 53.6 4.7 37 285-322 302-340 (564)
481 PF12775 AAA_7: P-loop contain 81.7 1.5 3.2E-05 48.3 4.1 27 290-316 25-52 (272)
482 COG2909 MalT ATP-dependent tra 81.7 3 6.5E-05 51.5 6.8 34 286-319 23-59 (894)
483 KOG0738 AAA+-type ATPase [Post 81.5 5.4 0.00012 44.9 8.1 41 269-311 218-259 (491)
484 KOG0347 RNA helicase [RNA proc 81.4 2.5 5.3E-05 49.4 5.7 56 557-619 266-321 (731)
485 cd01394 radB RadB. The archaea 81.3 1.6 3.4E-05 46.3 4.0 28 295-322 17-44 (218)
486 TIGR00763 lon ATP-dependent pr 81.2 2.9 6.4E-05 53.2 7.0 21 296-316 346-366 (775)
487 PF13238 AAA_18: AAA domain; P 81.0 0.89 1.9E-05 43.3 1.8 16 300-315 1-16 (129)
488 cd03239 ABC_SMC_head The struc 81.0 2.4 5.2E-05 43.5 5.0 43 396-439 114-157 (178)
489 TIGR02784 addA_alphas double-s 80.9 2.9 6.3E-05 55.8 7.1 60 294-355 7-66 (1141)
490 cd03276 ABC_SMC6_euk Eukaryoti 80.8 7.5 0.00016 40.5 8.8 41 397-438 130-173 (198)
491 KOG1970 Checkpoint RAD17-RFC c 80.8 1.5 3.2E-05 51.4 3.7 26 296-321 109-134 (634)
492 cd03281 ABC_MSH5_euk MutS5 hom 80.8 0.88 1.9E-05 48.2 1.8 24 297-320 29-52 (213)
493 cd03213 ABCG_EPDR ABCG transpo 80.6 1.6 3.4E-05 45.4 3.7 22 294-315 32-53 (194)
494 KOG1969 DNA replication checkp 80.6 2.7 5.9E-05 50.9 5.9 35 282-316 305-345 (877)
495 cd00561 CobA_CobO_BtuR ATP:cor 80.4 3.9 8.5E-05 40.9 6.1 139 300-446 5-144 (159)
496 PF01580 FtsK_SpoIIIE: FtsK/Sp 80.3 2.3 5E-05 44.5 4.9 45 294-339 35-79 (205)
497 PRK14530 adenylate kinase; Pro 80.3 1.1 2.4E-05 47.4 2.4 24 295-318 1-24 (215)
498 COG1219 ClpX ATP-dependent pro 80.2 0.84 1.8E-05 49.8 1.4 20 295-314 95-114 (408)
499 TIGR02237 recomb_radB DNA repa 80.2 1.8 3.8E-05 45.6 3.9 38 294-336 9-46 (209)
500 TIGR00643 recG ATP-dependent D 80.1 4 8.6E-05 50.8 7.5 91 541-634 271-362 (630)
No 1
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=1.4e-140 Score=1250.88 Aligned_cols=751 Identities=56% Similarity=0.920 Sum_probs=684.5
Q ss_pred HHHHhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccH
Q 001615 261 RQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRR 340 (1044)
Q Consensus 261 ~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r 340 (1044)
.+.....+..+++++..|.+||+|.++++|++++.++++++|+|+||||||||+||+||+..+..+ +.|+|+||||||
T Consensus 152 ~~~~~~~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--~~~~IicTQPRR 229 (924)
T KOG0920|consen 152 RQSEPKKSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--AACNIICTQPRR 229 (924)
T ss_pred hhchhhhhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--CCCeEEecCCch
Confidence 555667789999999999999999999999999999999999999999999999999999998765 789999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHH
Q 001615 341 ISAISVAARVSSERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLII 420 (1044)
Q Consensus 341 ~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~ 420 (1044)
+.|+++|+||++|+++..|..|||++|.+++.+..|.++|||+|+||+.|+.++.+.+++|||+||+|||++++||++.+
T Consensus 230 IsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~ 309 (924)
T KOG0920|consen 230 ISAISVAERVAKERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLIL 309 (924)
T ss_pred HHHHHHHHHHHHHhccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHH
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHcccCCcccEEEcccCCChHHHHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccc
Q 001615 421 LRDLLPRRPDLRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSK 500 (1044)
Q Consensus 421 lk~~~~~~~~~qiilmSATl~~~~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (1044)
+|.++..+|++|+|+||||+|++.|++||+++|+++|+|++|||..+|++|++..+.|........ .. . .
T Consensus 310 lk~lL~~~p~LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~-~~-~--------~ 379 (924)
T KOG0920|consen 310 LKDLLPRNPDLKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSAR-SG-P--------E 379 (924)
T ss_pred HHHHhhhCCCceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccc-cc-c--------c
Confidence 999999999999999999999999999999999999999999999999999999987766533222 00 0 0
Q ss_pred hhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccC
Q 001615 501 KDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFL 580 (1044)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~ 580 (1044)
...+. ...+..|.. .+|++++.+++.+|+.....|.||||+||+.+|..+++.|..+..+
T Consensus 380 ~~~~~-------------------~~~~~~~~~-~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f 439 (924)
T KOG0920|consen 380 RSQLR-------------------LARLKLWEP-EIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPF 439 (924)
T ss_pred cCccc-------------------cccchhccc-cccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcccc
Confidence 00000 000222222 2899999999999999988999999999999999999999877766
Q ss_pred CCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccH
Q 001615 581 GDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISK 660 (1044)
Q Consensus 581 ~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~ 660 (1044)
.+..++.++++|+.|+..||+.||...+.|.+|||+||||||+|||||||.||||+|+.|++.||+.++++++...|||+
T Consensus 440 ~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSk 519 (924)
T KOG0920|consen 440 ADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSK 519 (924)
T ss_pred ccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccc
Confidence 66678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhcccCCCCCCcEEEEecChhhHhhcCC-CCCCccccCChHHHHHHHHhccCCchhhhhhcCCCCCCHHHHHHHHH
Q 001615 661 ASAHQRRGRAGRVQPGVCYKLYPRIIHDAMLP-YQLPEILRTPLQELCLHIKSLQLGTVGSFLSKALQPPDPLAVQNAIE 739 (1044)
Q Consensus 661 a~~~QR~GRAGR~~~G~c~~L~t~~~~~~l~~-~~~pei~r~~L~~~~L~~k~l~~~~~~~fl~~~~~pP~~~~i~~al~ 739 (1044)
|++.||+|||||+++|+||+||++..|+.+.. +++|||+|.+|+++||++|.++.+++..||+.+++||+.+++..|++
T Consensus 520 Ana~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~ 599 (924)
T KOG0920|consen 520 ANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIE 599 (924)
T ss_pred cchHHhcccccCccCCeeEEeechhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHH
Confidence 99999999999999999999999999998877 99999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCCcCccccccccccCChhhHHHHHHhhhccChHHHHHHHhcccCCCccccCcchHHHHHHHHhhcCCCC
Q 001615 740 LLKTIGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDS 819 (1044)
Q Consensus 740 ~L~~lgal~~~~~lT~lG~~l~~lpl~p~~~k~ll~~~~~~c~~~~l~iaa~l~~~~~f~~p~~~~~~~~~~~~~~~~~~ 819 (1044)
.|..+|||+.+++||+||++|+.||+||++|||+++|++|+|+||+++|||+|+.++||+.|.+++++++++++.|+.+.
T Consensus 600 ~L~~igaL~~~e~LT~LG~~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~~~ 679 (924)
T KOG0920|consen 600 RLKQIGALDESEELTPLGLHLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLALDS 679 (924)
T ss_pred HHHHhccccCcccchHHHHHHHhCCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred CCcHHHHHHHHHHHHHHhcC--chhHHHHhhhcCChHHHHHHHHHHHHHHHHHHhcCCccCCC----CCCCCCCCCCCHH
Q 001615 820 CSDHIALLKAFDGYKDAKRN--RRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKSK----GPSAYNRYSHDLE 893 (1044)
Q Consensus 820 ~sD~l~~l~~f~~~~~~~~~--~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~----~~~~~n~~~~~~~ 893 (1044)
.||||+++++|+.|+..... ..+.+||++||||..+|+++.++|.||.+.|.++||+..+. ....+|.++.+++
T Consensus 680 ~SD~la~~~ay~~w~~~~~~~~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~ 759 (924)
T KOG0920|consen 680 ISDHLAVVRAYAGWREILRSGPSAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPE 759 (924)
T ss_pred cchHHHHHHHHHHHHHHHhccchHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHH
Confidence 89999999999999998766 56789999999999999999999999999999999987642 3456788899999
Q ss_pred HHHHHHHHhccCccccccc---CCcceeEEeccCceEEeCCCCcCCCCCCCCCCEEEEEEeeeccc-cccccccccChHH
Q 001615 894 MVCAILCAGLYPNVVQCKR---KGKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNN-INVYDSTNISEYA 969 (1044)
Q Consensus 894 ~v~~~L~ag~ypnva~~~~---~g~~~~~~t~~~~~v~iHPsSvl~~~~~~~~~~ivy~e~~~ts~-~~i~~~t~I~~~~ 969 (1044)
+++++||+|+|||++++.. +.+...++++..+.|.|||+|+|++...+..+|++|+|+++|++ +|+|++|.|++++
T Consensus 760 ~iravl~a~lyP~i~~~~~~~~~~~~~~~~~~~~~~v~i~~~sv~~~~~~~~~p~l~~~~k~~t~~~~~~rd~T~v~~~~ 839 (924)
T KOG0920|consen 760 LVRAVLCAGLYPNIAFVRRMEPKSKSVTFVTKADGRVIIHPSSVNEQSTGFQSPFLVFPEKVKSTRLVSLRDTTSVSSSA 839 (924)
T ss_pred HHHHHHhccCCCceeeeecccCCcCcceeecCCceeEEEecchhhccccccCCcceEEeeecccCCcceeeecCCCCcHH
Confidence 9999999999999998765 44556677888889999999999988878888999999999988 9999999999999
Q ss_pred HHHhcCCCCC-CCCCCCeE--EeCcEEEeecCHHHHHHHHHHHHHHHHHHHHHHcCCCCCC---CcchhHHHHHHHHHhc
Q 001615 970 LLLFGGNLIP-SKTGEGIE--MLGGYLHFSASKTVLELIRKLRGELDKLLNRKIEDPRVDL---SVEGKAVVSAVVELLH 1043 (1044)
Q Consensus 970 lllfgg~~~~-~~~~~~~~--~~d~~~~~~~~~~~~~l~~~lR~~ld~ll~~k~~~p~~~~---~~~~~~~l~~i~~l~~ 1043 (1044)
++||||.... .....+.. ..|+|+.|.++.+++.+++.||.++|.+|++++++|...+ ...+..+...+..++.
T Consensus 840 ~llfgg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~Lr~~l~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 919 (924)
T KOG0920|consen 840 LLLFGGGISTVRMKSGSLALLLPDGWLRFKALPKTARLLKELRRELDSLLSKKIRSPCASLPDSSGKGSESPSLIANLLV 919 (924)
T ss_pred heeecCCceeecCCCCccceecCCceEEeecchhHHHHHHHHHHHHHHHHHHhccCccccccccccccccchhhhhhhhh
Confidence 9999998763 22333333 3499999999999999999999999999999999999665 2345556666776654
No 2
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-131 Score=1109.91 Aligned_cols=622 Identities=41% Similarity=0.668 Sum_probs=571.1
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHH
Q 001615 271 GKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARV 350 (1044)
Q Consensus 271 ~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv 350 (1044)
...+.++|..|||++++++++..+.+++++||.|+||||||||+||++++..+.. .++|.||||||++|+++|+||
T Consensus 40 ~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~----~g~I~~TQPRRVAavslA~RV 115 (674)
T KOG0922|consen 40 NLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFAS----SGKIACTQPRRVAAVSLAKRV 115 (674)
T ss_pred ccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhccccc----CCcEEeecCchHHHHHHHHHH
Confidence 3467889999999999999999999999999999999999999999999998764 345999999999999999999
Q ss_pred HHHhCCCCCcEEEEEEeccccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCc
Q 001615 351 SSERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPD 430 (1044)
Q Consensus 351 ~~~~~~~~g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~ 430 (1044)
++|++..+|..|||++||++.++..|+|.|+|+|+|||.+..||.|++|++|||||||||++.+|+++++||.+++++++
T Consensus 116 AeE~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~ 195 (674)
T KOG0922|consen 116 AEEMGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPD 195 (674)
T ss_pred HHHhCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEcccCCChHHHHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhhhhc
Q 001615 431 LRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFED 510 (1044)
Q Consensus 431 ~qiilmSATl~~~~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (1044)
+|+|+||||+|++.|++||+++|++.|+||.|||++.|+... ..|.+.+
T Consensus 196 LklIimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p---------------------------~~dYv~a---- 244 (674)
T KOG0922|consen 196 LKLIIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEP---------------------------TADYVDA---- 244 (674)
T ss_pred ceEEEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCC---------------------------chhhHHH----
Confidence 999999999999999999999999999999999999997521 0111111
Q ss_pred ccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccc-cCCCCCCeEEE
Q 001615 511 VDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNK-FLGDPNKFLVL 589 (1044)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~-~~~~~~~~~i~ 589 (1044)
....+..|+.++++|+||||++|++||+.+++.|.+.. .........++
T Consensus 245 ------------------------------~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~l 294 (674)
T KOG0922|consen 245 ------------------------------ALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELIL 294 (674)
T ss_pred ------------------------------HHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceee
Confidence 23356678888999999999999999999999998641 11111223789
Q ss_pred EecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhccc
Q 001615 590 PLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGR 669 (1044)
Q Consensus 590 ~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GR 669 (1044)
|+||.||.++|.+||...+.|.||||+||||||||||||+|.||||+|+.|.+.|||.+++++|..+||||+++.||+||
T Consensus 295 ply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGR 374 (674)
T KOG0922|consen 295 PLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGR 374 (674)
T ss_pred eecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEecChhhHhhcCCCCCCccccCChHHHHHHHHhccCCchhhhhhcCCCCCCHHHHHHHHHHHHHcCCCCC
Q 001615 670 AGRVQPGVCYKLYPRIIHDAMLPYQLPEILRTPLQELCLHIKSLQLGTVGSFLSKALQPPDPLAVQNAIELLKTIGALDD 749 (1044)
Q Consensus 670 AGR~~~G~c~~L~t~~~~~~l~~~~~pei~r~~L~~~~L~~k~l~~~~~~~fl~~~~~pP~~~~i~~al~~L~~lgal~~ 749 (1044)
|||++||+|||||++++|+.|++.++|||+|++|..++|++|+|+++++..| +|++||+++++..|++.|..+||||+
T Consensus 375 AGRt~pGkcyRLYte~~~~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F--~f~d~P~~~~l~~AL~~L~~lgald~ 452 (674)
T KOG0922|consen 375 AGRTGPGKCYRLYTESAYDKMPLQTVPEIQRVNLSSAVLQLKALGINDPLRF--PFIDPPPPEALEEALEELYSLGALDD 452 (674)
T ss_pred CCCCCCceEEEeeeHHHHhhcccCCCCceeeechHHHHHHHHhcCCCCcccC--CCCCCCChHHHHHHHHHHHhcCcccC
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCCcCc-cccccccccCChhhHHHHHHhhhccChHHHHHHHhcccCCCccccCcchHHH-HHHHHhhcCCCCCCcHHHHH
Q 001615 750 MENLTP-LGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKE-VDEAKRSFAGDSCSDHIALL 827 (1044)
Q Consensus 750 ~~~lT~-lG~~l~~lpl~p~~~k~ll~~~~~~c~~~~l~iaa~l~~~~~f~~p~~~~~~-~~~~~~~~~~~~~sD~l~~l 827 (1044)
++.||. +|+.|+.+|++|.++|||+.+..++|++++++|||+|+++++|..|.+.+.+ ++..|.+|.. ..+||+++|
T Consensus 453 ~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~~~a~~~~~kf~~-~eGDh~tlL 531 (674)
T KOG0922|consen 453 RGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFSRPKDKKAEDADRKRAKFAN-PEGDHLTLL 531 (674)
T ss_pred cCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeeccceecCccchhhhhhhHHHHhhcC-cccCHHHHH
Confidence 999998 9999999999999999999999999999999999999999999999998877 8999999985 678999999
Q ss_pred HHHHHHHHHhcCchhHHHHhhhcCChHHHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCCHHHHHHHHHHhccCcc
Q 001615 828 KAFDGYKDAKRNRRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKSKGPSAYNRYSHDLEMVCAILCAGLYPNV 907 (1044)
Q Consensus 828 ~~f~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~~~n~~~~~~~~v~~~L~ag~ypnv 907 (1044)
++|+.|.. ++...+||++|||+.+.|+.+.++|+||.+++.+.++...++ ..|.+.|++|||+|||.|+
T Consensus 532 ~vy~~~~~---~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s~--------~~d~~~i~k~l~aGff~N~ 600 (674)
T KOG0922|consen 532 NVYESWKE---NGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPVSSC--------GGDMEKIRKCLCAGFFRNV 600 (674)
T ss_pred HHHHHHHh---cCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHHHHH
Confidence 99999987 456789999999999999999999999999998888765432 3567889999999999999
Q ss_pred cccc-cCCcceeEEeccCceEEeCCCCcCCCCCCCCCCEEEEEEeeeccccccccccccChHHHHHhcCCC
Q 001615 908 VQCK-RKGKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNL 977 (1044)
Q Consensus 908 a~~~-~~g~~~~~~t~~~~~v~iHPsSvl~~~~~~~~~~ivy~e~~~ts~~~i~~~t~I~~~~lllfgg~~ 977 (1044)
|+.. .+|+++ ...+..|+|||||+++..+ ++||||+|++.|+|.|++++|.|.+.||..++.+.
T Consensus 601 A~~~~~~~Yrt---i~~~~~v~IHPSS~l~~~~---p~~viy~el~~Ttk~Y~r~Vt~i~~~wL~e~ap~~ 665 (674)
T KOG0922|consen 601 AERDYQDGYRT---IRGGQPVYIHPSSVLFRRK---PEWVIYHELLQTTKEYMRNVTAIDPEWLLELAPHF 665 (674)
T ss_pred HHhhcCCCeEE---ccCCcEEEEechHHhhcCC---CCEEEEEEEeecchHhHhheeecCHHHHHHhCchH
Confidence 9876 334322 1346789999999998753 79999999999999999999999999999988765
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.3e-128 Score=1064.25 Aligned_cols=621 Identities=37% Similarity=0.593 Sum_probs=571.5
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHH
Q 001615 273 AMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSS 352 (1044)
Q Consensus 273 ~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~ 352 (1044)
.+.++|+.||++..+++++..|..|++|||+|+||||||||++||+++..+.. .+.|.||||||.+|+++|+||+.
T Consensus 347 ~i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~----~GmIGcTQPRRvAAiSVAkrVa~ 422 (1042)
T KOG0924|consen 347 SIREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYAD----NGMIGCTQPRRVAAISVAKRVAE 422 (1042)
T ss_pred hHHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhccccc----CCeeeecCchHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999987653 55899999999999999999999
Q ss_pred HhCCCCCcEEEEEEeccccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCccc
Q 001615 353 ERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLR 432 (1044)
Q Consensus 353 ~~~~~~g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~q 432 (1044)
|++..+|..|||.|||++.+++.|.|.|+|.|+||+....+..|..|++||+||||||++++|++++++|.++..+.|+|
T Consensus 423 EM~~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlK 502 (1042)
T KOG0924|consen 423 EMGVTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLK 502 (1042)
T ss_pred HhCCccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCCChHHHHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhhhhccc
Q 001615 433 LILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVD 512 (1044)
Q Consensus 433 iilmSATl~~~~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1044)
+|++|||++++.|++|||+||.+.||||+|||++.|.....+ |.
T Consensus 503 liVtSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~e---------------------------DY--------- 546 (1042)
T KOG0924|consen 503 LIVTSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVE---------------------------DY--------- 546 (1042)
T ss_pred EEEeeccccHHHHHHHhCCCceeeecCCccceEEEeccCchH---------------------------HH---------
Confidence 999999999999999999999999999999999998653211 11
Q ss_pred ccccccchhhhhHHHHHhhhhhhhchHHHHHHHH---HHHhccCCCCEEEEeCCHHHHHHHHHHHHccc---cCCCCCCe
Q 001615 513 IDSNYKNYRASTRASLEAWSAEQIDLGLVESTIE---YICRHEGDGAILVFLTGWNDISKLLDQIKVNK---FLGDPNKF 586 (1044)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~---~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~---~~~~~~~~ 586 (1044)
+..++. .|+....+|+||||++|.++|+..+..+.... ..+....+
T Consensus 547 ----------------------------Veaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L 598 (1042)
T KOG0924|consen 547 ----------------------------VEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDL 598 (1042)
T ss_pred ----------------------------HHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCce
Confidence 222222 34556678999999999999999888876431 11222479
Q ss_pred EEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHh
Q 001615 587 LVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQR 666 (1044)
Q Consensus 587 ~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR 666 (1044)
.|+|+|+.||.+-|.++|+..+.|.+||||||||||++||||+|.||||+|+.|.+.|++..|+.+|+.++||+|++.||
T Consensus 599 ~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QR 678 (1042)
T KOG0924|consen 599 AVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQR 678 (1042)
T ss_pred EEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcEEEEecChhhH-hhcCCCCCCccccCChHHHHHHHHhccCCchhhhhhcCCCCCCHHHHHHHHHHHHHcC
Q 001615 667 RGRAGRVQPGVCYKLYPRIIH-DAMLPYQLPEILRTPLQELCLHIKSLQLGTVGSFLSKALQPPDPLAVQNAIELLKTIG 745 (1044)
Q Consensus 667 ~GRAGR~~~G~c~~L~t~~~~-~~l~~~~~pei~r~~L~~~~L~~k~l~~~~~~~fl~~~~~pP~~~~i~~al~~L~~lg 745 (1044)
+|||||++||.||||||+..| +.|.+.++|||+|++|.+++|.+|+|+++++..| +|+|||+.+.+.+|+..|..+|
T Consensus 679 aGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~F--dFmD~Pped~~~~sly~Lw~LG 756 (1042)
T KOG0924|consen 679 AGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKF--DFMDPPPEDNLLNSLYQLWTLG 756 (1042)
T ss_pred ccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCC--CcCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999877 5799999999999999999999999999999999 9999999999999999999999
Q ss_pred CCCCCCCcCccccccccccCChhhHHHHHHhhhccChHHHHHHHhcccCCCccccCcchHHHHHHHHhhcCCCCCCcHHH
Q 001615 746 ALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDSCSDHIA 825 (1044)
Q Consensus 746 al~~~~~lT~lG~~l~~lpl~p~~~k~ll~~~~~~c~~~~l~iaa~l~~~~~f~~p~~~~~~~~~~~~~~~~~~~sD~l~ 825 (1044)
||+..|.||++|+.|+.|||||.++||||.|+.+||.+|+|+|++|||+...|+.|.+..++++.+|.+|.. ..|||||
T Consensus 757 Al~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~~-~~sDhLT 835 (1042)
T KOG0924|consen 757 ALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQV-PESDHLT 835 (1042)
T ss_pred ccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeeccccchhhhhhHHhhhcC-CCCchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999985 6899999
Q ss_pred HHHHHHHHHHHhcCchhHHHHhhhcCChHHHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCCHHHHHHHHHHhccC
Q 001615 826 LLKAFDGYKDAKRNRRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKSKGPSAYNRYSHDLEMVCAILCAGLYP 905 (1044)
Q Consensus 826 ~l~~f~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~~~n~~~~~~~~v~~~L~ag~yp 905 (1044)
+||+|++|+.. .....||.+|||+.++|+.+.++|.||+++|+.++++..+ +.+|++|++|||+|+|-
T Consensus 836 lLNVf~qw~~~---~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S---------~~dwdivrKCIcs~~fh 903 (1042)
T KOG0924|consen 836 LLNVFNQWRKN---KYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLIS---------SDDWDIVRKCICSAYFH 903 (1042)
T ss_pred HHHHHHHHHhc---CCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCccc---------CchHHHHHHHHHHHHHH
Confidence 99999999864 4567899999999999999999999999999999886543 37899999999999999
Q ss_pred cccccccCCcceeEEeccCceEEeCCCCcCCCCCCCCCCEEEEEEeeeccccccccccccChHHHHHhcCCCCCC
Q 001615 906 NVVQCKRKGKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNLIPS 980 (1044)
Q Consensus 906 nva~~~~~g~~~~~~t~~~~~v~iHPsSvl~~~~~~~~~~ivy~e~~~ts~~~i~~~t~I~~~~lllfgg~~~~~ 980 (1044)
|+|+.+..|.+. ....+..++|||||+|++. +.|+||||+|++.|++.||+|||.|+|.||+-.|+-....
T Consensus 904 n~Arlkg~g~YV--~~~tg~~c~lHPsS~L~g~--y~p~Yivyhel~~T~keym~cvT~v~~~wl~E~gp~~y~i 974 (1042)
T KOG0924|consen 904 NAARLKGIGEYV--NLSTGIPCHLHPSSVLHGL--YTPDYIVYHELLMTTKEYMQCVTSVSPEWLAELGPMFYSI 974 (1042)
T ss_pred HHHHhccCceEE--EccCCcceeecchHhhhcC--CCCCeeeehHHHHhHHHHHHHHhhCCHHHHHHhCceeEec
Confidence 999887666432 2344567999999999986 5679999999999999999999999999999999876543
No 4
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-124 Score=1036.30 Aligned_cols=626 Identities=37% Similarity=0.607 Sum_probs=567.4
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHH
Q 001615 271 GKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARV 350 (1044)
Q Consensus 271 ~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv 350 (1044)
...+.+.|+.||+|+++++++.+|..++++||.|+||||||||+|||+.+..+..+ +.+|-||||||++|++||.||
T Consensus 254 ~~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~---gk~IgcTQPRRVAAmSVAaRV 330 (902)
T KOG0923|consen 254 RESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKG---GKKIGCTQPRRVAAMSVAARV 330 (902)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccC---CceEeecCcchHHHHHHHHHH
Confidence 45688899999999999999999999999999999999999999999999988642 345999999999999999999
Q ss_pred HHHhCCCCCcEEEEEEeccccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCc
Q 001615 351 SSERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPD 430 (1044)
Q Consensus 351 ~~~~~~~~g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~ 430 (1044)
++|++..+|..|||+|||+++++++|.|.|||+|||++.+..+|.|..|++|||||||||++.+|+|.++++++.+.||+
T Consensus 331 A~EMgvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~Rpd 410 (902)
T KOG0923|consen 331 AEEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPD 410 (902)
T ss_pred HHHhCcccccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEcccCCChHHHHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhhhhc
Q 001615 431 LRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFED 510 (1044)
Q Consensus 431 ~qiilmSATl~~~~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (1044)
+|++++|||+|++.|+.||+++|++.+|||.|||.++|.... ..|.+..
T Consensus 411 LKllIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~P---------------------------EAdYldA---- 459 (902)
T KOG0923|consen 411 LKLLISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAP---------------------------EADYLDA---- 459 (902)
T ss_pred ceEEeeccccCHHHHHHhccCCcEEeccCcccceeeecccCC---------------------------chhHHHH----
Confidence 999999999999999999999999999999999999996421 0111111
Q ss_pred ccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccc--cCCCCCCeEE
Q 001615 511 VDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNK--FLGDPNKFLV 588 (1044)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~--~~~~~~~~~i 588 (1044)
....+..|+.+.+.|+||||+++.++|+.+.+.|.+.. +-.....+.|
T Consensus 460 ------------------------------ai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv 509 (902)
T KOG0923|consen 460 ------------------------------AIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIV 509 (902)
T ss_pred ------------------------------HHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEE
Confidence 22244556667888999999999999999998887532 1122357889
Q ss_pred EEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcc
Q 001615 589 LPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRG 668 (1044)
Q Consensus 589 ~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~G 668 (1044)
+|+|++||.+.|.+||++.++|.+|||+|||||||||||++|.||||.|+.|+..|+|++||.+|..++||||++.||+|
T Consensus 510 ~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaG 589 (902)
T KOG0923|consen 510 LPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAG 589 (902)
T ss_pred eeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEecChhhHh-hcCCCCCCccccCChHHHHHHHHhccCCchhhhhhcCCCCCCHHHHHHHHHHHHHcCCC
Q 001615 669 RAGRVQPGVCYKLYPRIIHD-AMLPYQLPEILRTPLQELCLHIKSLQLGTVGSFLSKALQPPDPLAVQNAIELLKTIGAL 747 (1044)
Q Consensus 669 RAGR~~~G~c~~L~t~~~~~-~l~~~~~pei~r~~L~~~~L~~k~l~~~~~~~fl~~~~~pP~~~~i~~al~~L~~lgal 747 (1044)
||||++||+||||||...|. .+...+.|||+|++|.+++|.+|+||+.++-+| +|+|||+.+++..||+.|+.+|||
T Consensus 590 RAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~F--dFmDpPp~etL~~aLE~LyaLGAL 667 (902)
T KOG0923|consen 590 RAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHF--DFLDPPPTETLLKALEQLYALGAL 667 (902)
T ss_pred ccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcchhccc--ccCCCCChHHHHHHHHHHHHhhcc
Confidence 99999999999999999886 577788899999999999999999999999999 999999999999999999999999
Q ss_pred CCCCCcCccccccccccCChhhHHHHHHhhhccChHHHHHHHhcccCC-CccccCcchHHHHHHHHhhcCCCCCCcHHHH
Q 001615 748 DDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHR-NPFVLPVNMQKEVDEAKRSFAGDSCSDHIAL 826 (1044)
Q Consensus 748 ~~~~~lT~lG~~l~~lpl~p~~~k~ll~~~~~~c~~~~l~iaa~l~~~-~~f~~p~~~~~~~~~~~~~~~~~~~sD~l~~ 826 (1044)
+..|+||.+|+.|++||+||+++|||+.+..++|.+++++||||||+. ++|+.|.++.--++.+++.|.. ..|||+++
T Consensus 668 n~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~~-~~gDhi~~ 746 (902)
T KOG0923|consen 668 NHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFEE-PVGDHIVL 746 (902)
T ss_pred ccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccCC-CCcchhhh
Confidence 999999999999999999999999999999999999999999999975 6999999998899999999985 58999999
Q ss_pred HHHHHHHHHHhcCchhHHHHhhhcCChHHHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCCHHHHHHHHHHhccCc
Q 001615 827 LKAFDGYKDAKRNRRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKSKGPSAYNRYSHDLEMVCAILCAGLYPN 906 (1044)
Q Consensus 827 l~~f~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~~~n~~~~~~~~v~~~L~ag~ypn 906 (1044)
|++|+.|... +...+||.+||+.+++|..+.++|.||..+|.+.+....+. ..+...|+.++.+|||+|
T Consensus 747 L~vyn~w~es---~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s~--------~~~~~~irk~i~aGff~h 815 (902)
T KOG0923|consen 747 LNVYNQWKES---KYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSSN--------QNDLDKIRKAITAGFFYH 815 (902)
T ss_pred hHHHHHHhhc---chhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccCC--------hHHHHHHHHHHhcccccc
Confidence 9999999875 35689999999999999999999999999998876543321 125667899999999999
Q ss_pred ccccccCCcceeEEeccCceEEeCCCCcCCCCCCCCCCEEEEEEeeeccccccccccccChHHHHHhcCCCCC
Q 001615 907 VVQCKRKGKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNLIP 979 (1044)
Q Consensus 907 va~~~~~g~~~~~~t~~~~~v~iHPsSvl~~~~~~~~~~ivy~e~~~ts~~~i~~~t~I~~~~lllfgg~~~~ 979 (1044)
+|+....|.. ...+....|++||.|+++.. . |.||||++++.|++.||+.++.+.+.||+-.+.+...
T Consensus 816 ~a~l~~~g~y--~tvk~~~tv~~hp~S~l~~~--~-P~wvvy~eLv~tske~mr~~~e~e~~Wlie~aphyyk 883 (902)
T KOG0923|consen 816 TAKLSKGGHY--RTVKHPQTVSIHPNSGLFEQ--L-PRWVVYHELVLTSKEFMRQVIEIEEEWLIEVAPHYYK 883 (902)
T ss_pred ceeccCCCcc--eeeccCcceeecCccccccc--C-CceEEEeehhcChHHHHHHHHhhhhhHHHHhchhhhh
Confidence 9988777632 12355667999999999874 2 4899999999999999999999999999998887654
No 5
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-121 Score=982.60 Aligned_cols=633 Identities=38% Similarity=0.619 Sum_probs=574.4
Q ss_pred HHHHHhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEccc
Q 001615 260 ERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPR 339 (1044)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~ 339 (1044)
+-+...+++++|.++++.|..||+|.++++.++.+.+|+.++++|+||||||||+||++++...... ..|.||||+
T Consensus 25 Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~----~~v~CTQpr 100 (699)
T KOG0925|consen 25 NPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL----TGVACTQPR 100 (699)
T ss_pred CCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc----cceeecCch
Confidence 3455678899999999999999999999999999999999999999999999999999999987653 479999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHH
Q 001615 340 RISAISVAARVSSERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLI 419 (1044)
Q Consensus 340 r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~ 419 (1044)
|.+|+|+|.||++|++..+|..|||.|+++++.+++|-+.|||+|+|++..++++.|..+++||+||||||++.+|.+++
T Consensus 101 rvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmG 180 (699)
T KOG0925|consen 101 RVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMG 180 (699)
T ss_pred HHHHHHHHHHHHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcccCCcccEEEcccCCChHHHHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCcccccccccccccccccc
Q 001615 420 ILRDLLPRRPDLRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDS 499 (1044)
Q Consensus 420 ~lk~~~~~~~~~qiilmSATl~~~~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (1044)
++|.+...+||+|+|+||||+++++|.+||+++|++.||| ++||+++|....
T Consensus 181 llk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~--------------------------- 232 (699)
T KOG0925|consen 181 LLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEP--------------------------- 232 (699)
T ss_pred HHHHHHhhCCCceEEEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCC---------------------------
Confidence 9999999999999999999999999999999999999999 999999987531
Q ss_pred chhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHcc--
Q 001615 500 KKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVN-- 577 (1044)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~-- 577 (1044)
..|.+.. ...++..|+..+.+|+||||+++.++|+.+++.+...
T Consensus 233 erDylEa----------------------------------airtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~ 278 (699)
T KOG0925|consen 233 ERDYLEA----------------------------------AIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVD 278 (699)
T ss_pred ChhHHHH----------------------------------HHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHH
Confidence 1122211 3345667777788999999999999999999999732
Q ss_pred ccCCCCCCeEEEEecCCCChHHHHhhhCCCCCC-----CcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccc
Q 001615 578 KFLGDPNKFLVLPLHGSMPTINQREIFDRPPPN-----KRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLAC 652 (1044)
Q Consensus 578 ~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g-----~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~ 652 (1044)
.+..+.....|+||| +.+|..+|+..+.. .+||+|+||+||++++|++|+||||.|+.|++.|||+.++.+
T Consensus 279 ~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRves 354 (699)
T KOG0925|consen 279 NLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVES 354 (699)
T ss_pred hhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeee
Confidence 233344678999999 66778889887643 589999999999999999999999999999999999999999
Q ss_pred cccccccHhhHHHhcccCCCCCCcEEEEecChhhHh-hcCCCCCCccccCChHHHHHHHHhccCCchhhhhhcCCCCCCH
Q 001615 653 LLPSWISKASAHQRRGRAGRVQPGVCYKLYPRIIHD-AMLPYQLPEILRTPLQELCLHIKSLQLGTVGSFLSKALQPPDP 731 (1044)
Q Consensus 653 l~~~~iS~a~~~QR~GRAGR~~~G~c~~L~t~~~~~-~l~~~~~pei~r~~L~~~~L~~k~l~~~~~~~fl~~~~~pP~~ 731 (1044)
|...+|||+++.||+|||||++||+||+|||++.|+ .|.+.+.|||+|++|.+++|++|.+++.+..+| +|+|||.+
T Consensus 355 llv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhf--dfmDpPAP 432 (699)
T KOG0925|consen 355 LLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHF--DFMDPPAP 432 (699)
T ss_pred eeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCC--cCCCCCCh
Confidence 999999999999999999999999999999999885 699999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcCccccccccccCChhhHHHHHHhhhccChHHHHHHHhcccCCCccccCc-chHHHHHH
Q 001615 732 LAVQNAIELLKTIGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPV-NMQKEVDE 810 (1044)
Q Consensus 732 ~~i~~al~~L~~lgal~~~~~lT~lG~~l~~lpl~p~~~k~ll~~~~~~c~~~~l~iaa~l~~~~~f~~p~-~~~~~~~~ 810 (1044)
+++.+|++.|..++|||++|+||++|..|++||+||+++||||.++.|+|.+|+|+|+|||++.+.|+.|. +.++.++.
T Consensus 433 EtLMrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPncFvRp~~~a~kaAde 512 (699)
T KOG0925|consen 433 ETLMRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPNCFVRPTSSASKAADE 512 (699)
T ss_pred HHHHHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCccccCCChhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 77889999
Q ss_pred HHhhcCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHhhhcCChHHHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCCC
Q 001615 811 AKRSFAGDSCSDHIALLKAFDGYKDAKRNRRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKSKGPSAYNRYSH 890 (1044)
Q Consensus 811 ~~~~~~~~~~sD~l~~l~~f~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~~~n~~~~ 890 (1044)
+|+.|+ +..|||+|++|+|++|++. +...+||++||||+++|+.+..+|.||.++|.++++...+. +++. .+
T Consensus 513 ak~~fa-H~dGDHlTLlnVYhAfkq~---~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st---~F~S-~~ 584 (699)
T KOG0925|consen 513 AKETFA-HIDGDHLTLLNVYHAFKQN---NEDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCST---DFGS-RD 584 (699)
T ss_pred HHHHhc-cCCcchHHHHHHHHHHHhc---CCChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCC---CCCC-hh
Confidence 999998 4789999999999999874 35678999999999999999999999999999998876542 2322 22
Q ss_pred CHHHHHHHHHHhccCcccccccCCcceeEEeccCceEEeCCCCcCCCCCCCCCCEEEEEEeeeccccccccccccChHHH
Q 001615 891 DLEMVCAILCAGLYPNVVQCKRKGKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYAL 970 (1044)
Q Consensus 891 ~~~~v~~~L~ag~ypnva~~~~~g~~~~~~t~~~~~v~iHPsSvl~~~~~~~~~~ivy~e~~~ts~~~i~~~t~I~~~~l 970 (1044)
+.-.|+++|++|+|.+||+..+.|+ .+..++++.|++||++++.+ +|+|++|+|.+.|++.|||.+|.|.|.|+
T Consensus 585 y~~nirKALvsgyFmqVA~~~~~~~--Ylt~kdnqvvqLhps~~l~~----~PeWVlyneFvlt~~N~ir~vt~I~pewl 658 (699)
T KOG0925|consen 585 YYVNIRKALVSGYFMQVAHLERGGH--YLTVKDNQVVQLHPSTCLDH----KPEWVLYNEFVLTTKNFIRTVTDIRPEWL 658 (699)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCc--eEEEecCceEEeccccccCC----CCCeEEEeeEEeeccceeeeecccCHHHH
Confidence 3446899999999999998766653 23446788899999999853 57999999999999999999999999999
Q ss_pred HHhcCCCC
Q 001615 971 LLFGGNLI 978 (1044)
Q Consensus 971 llfgg~~~ 978 (1044)
+-.+....
T Consensus 659 v~laP~Yy 666 (699)
T KOG0925|consen 659 VELAPQYY 666 (699)
T ss_pred HHhchhhc
Confidence 98776543
No 6
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2.7e-113 Score=1058.50 Aligned_cols=623 Identities=32% Similarity=0.551 Sum_probs=556.4
Q ss_pred HHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHH
Q 001615 274 MLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSE 353 (1044)
Q Consensus 274 ~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~ 353 (1044)
.+.++..||++.++++|++++.+++++||+|+||||||||+|+++++.. .+..++|+|+||||.+|.++|+||+++
T Consensus 66 ~~~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g----~g~~g~I~~TQPRRlAArsLA~RVA~E 141 (1294)
T PRK11131 66 EITYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELG----RGVKGLIGHTQPRRLAARTVANRIAEE 141 (1294)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcC----CCCCCceeeCCCcHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999998853 344568999999999999999999999
Q ss_pred hCCCCCcEEEEEEeccccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccE
Q 001615 354 RGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRL 433 (1044)
Q Consensus 354 ~~~~~g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qi 433 (1044)
++..+|..|||+++++++.+.+++|+|||||+|++++..++.|++|++|||||||||++++||++++++.++..+|++|+
T Consensus 142 l~~~lG~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKv 221 (1294)
T PRK11131 142 LETELGGCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKV 221 (1294)
T ss_pred HhhhhcceeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEcccCCChHHHHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhhhhcccc
Q 001615 434 ILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDI 513 (1044)
Q Consensus 434 ilmSATl~~~~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (1044)
|+||||++.+.|++||+++|++.|+|+.|||+.+|..... . + ...+.+.+
T Consensus 222 ILmSATid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~---------~-~-----------~~~~~d~l--------- 271 (1294)
T PRK11131 222 IITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVE---------E-A-----------DDTERDQL--------- 271 (1294)
T ss_pred EEeeCCCCHHHHHHHcCCCCEEEEcCccccceEEEeeccc---------c-c-----------chhhHHHH---------
Confidence 9999999999999999999999999999999988864210 0 0 00000100
Q ss_pred cccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecC
Q 001615 514 DSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHG 593 (1044)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~ 593 (1044)
..+..++..++ ....|+|||||||+++|+.+++.|..... ....|+++||
T Consensus 272 -------------------------~~ll~~V~~l~-~~~~GdILVFLpg~~EIe~lae~L~~~~~----~~~~VlpLhg 321 (1294)
T PRK11131 272 -------------------------QAIFDAVDELG-REGPGDILIFMSGEREIRDTADALNKLNL----RHTEILPLYA 321 (1294)
T ss_pred -------------------------HHHHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHHhcCC----CcceEeeccc
Confidence 01223334444 35678999999999999999999986432 3466899999
Q ss_pred CCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC
Q 001615 594 SMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV 673 (1044)
Q Consensus 594 ~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~ 673 (1044)
+|++++|.++|+. .|.++|||||||||+|||||+|+||||+|+.|.+.||+.++++.|...|||+++|.||+|||||.
T Consensus 322 ~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~ 399 (1294)
T PRK11131 322 RLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV 399 (1294)
T ss_pred CCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC
Confidence 9999999999986 57899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecChhhHhhcCCCCCCccccCChHHHHHHHHhccCCchhhhhhcCCCCCCHHHHHHHHHHHHHcCCCCCC---
Q 001615 674 QPGVCYKLYPRIIHDAMLPYQLPEILRTPLQELCLHIKSLQLGTVGSFLSKALQPPDPLAVQNAIELLKTIGALDDM--- 750 (1044)
Q Consensus 674 ~~G~c~~L~t~~~~~~l~~~~~pei~r~~L~~~~L~~k~l~~~~~~~fl~~~~~pP~~~~i~~al~~L~~lgal~~~--- 750 (1044)
++|+||+||++++|+.+++++.|||+|++|.++||++|+++++++..| .|++||+.++|..|++.|..+||||.+
T Consensus 400 ~~G~c~rLyte~d~~~~~~~~~PEIlR~~L~~viL~lk~lgl~di~~F--~fldpP~~~~i~~al~~L~~LgAld~~~~~ 477 (1294)
T PRK11131 400 SEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAF--PFVEAPDKRNIQDGVRLLEELGAITTDEQA 477 (1294)
T ss_pred CCcEEEEeCCHHHHHhhhcccCCccccCCHHHHHHHHHHcCCCCccee--eCCCCCCHHHHHHHHHHHHHCCCCCccccC
Confidence 999999999999999999999999999999999999999999999999 899999999999999999999999864
Q ss_pred --CCcCccccccccccCChhhHHHHHHhhhccChHHHHHHHhcccCCCccccCcchHHHHHHHHhhcCCCCCCcHHHHHH
Q 001615 751 --ENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDSCSDHIALLK 828 (1044)
Q Consensus 751 --~~lT~lG~~l~~lpl~p~~~k~ll~~~~~~c~~~~l~iaa~l~~~~~f~~p~~~~~~~~~~~~~~~~~~~sD~l~~l~ 828 (1044)
++||++|+.|++||+||++||||+.|+.|+|++++++|||+|++++||..|.+++++++.+|++|. +..|||++++|
T Consensus 478 ~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~dpf~~p~~~~~~a~~~~~~f~-~~~sD~lt~ln 556 (1294)
T PRK11131 478 SAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQDPRERPMDKQQASDEKHRRFA-DKESDFLAFVN 556 (1294)
T ss_pred CCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcccCCchhHHHHHHHHHhhC-CCCCCHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999999999998 46899999999
Q ss_pred HHHHHHHHhc---CchhHHHHhhhcCChHHHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCCHHHHHHHHHHhccC
Q 001615 829 AFDGYKDAKR---NRRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKSKGPSAYNRYSHDLEMVCAILCAGLYP 905 (1044)
Q Consensus 829 ~f~~~~~~~~---~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~~~n~~~~~~~~v~~~L~ag~yp 905 (1044)
+|+.|..... .+..++||++||||+.+|+++.+++.||.++++++|+... ....+++.|++|||+|||+
T Consensus 557 ~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~~--------~~~~~~~~i~~all~G~~~ 628 (1294)
T PRK11131 557 LWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVN--------SEPAEYREIHTALLTGLLS 628 (1294)
T ss_pred HHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCC--------CCcccHHHHHHHHHhhcHH
Confidence 9999976432 2334689999999999999999999999999999998543 2235688999999999999
Q ss_pred cccccccCCcceeEEeccCceEEeCCCCcCCCCCCCCCCEEEEEEeeeccccccccccccChHHHHHhcCCCC
Q 001615 906 NVVQCKRKGKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNLI 978 (1044)
Q Consensus 906 nva~~~~~g~~~~~~t~~~~~v~iHPsSvl~~~~~~~~~~ivy~e~~~ts~~~i~~~t~I~~~~lllfgg~~~ 978 (1044)
|+|+...+++ .|.+..+..++|||+|++++. +++||||+|++.|++.|+|+||.|+|.|+.-+++++.
T Consensus 629 nva~~~~~~~--~y~~~~~~~~~ihP~S~L~~~---~p~wvv~~Elv~Tsr~y~r~va~I~p~Wl~~~a~~l~ 696 (1294)
T PRK11131 629 HIGMKDAEKQ--EYTGARNARFSIFPGSGLFKK---PPKWVMVAELVETSRLWGRIAARIEPEWIEPLAQHLI 696 (1294)
T ss_pred HHeeccCCCC--eEEccCCcEEEEcCCccccCC---CCCEEEEEeeeccChhhhhhhcccCHHHHHHHHHHhc
Confidence 9997654332 234445778999999999863 5789999999999999999999999999999888764
No 7
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.3e-109 Score=1027.05 Aligned_cols=643 Identities=33% Similarity=0.562 Sum_probs=563.0
Q ss_pred hHHHHHHHHHHHhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcE
Q 001615 253 RLNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCN 332 (1044)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ 332 (1044)
++...+................+.++..||++.++++|+.+|.+++++||+|+||||||||+|+++++.. .+..++
T Consensus 38 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~----~~~~~~ 113 (1283)
T TIGR01967 38 KFRERIDAACDKVEARRQAVPEIRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELG----RGSHGL 113 (1283)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcC----CCCCce
Confidence 3334443333333333333456778899999999999999999999999999999999999999999853 334568
Q ss_pred EEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccc
Q 001615 333 IICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGM 412 (1044)
Q Consensus 333 ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~ 412 (1044)
|+|+||||.+|.++|+||++++++.+|..|||+++++++.+.+|+|+|||+|+|++++..++.|++|++|||||||||++
T Consensus 114 I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL 193 (1283)
T TIGR01967 114 IGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSL 193 (1283)
T ss_pred EecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcccCCcccEEEcccCCChHHHHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccccccccc
Q 001615 413 NEDFLLIILRDLLPRRPDLRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSR 492 (1044)
Q Consensus 413 ~~d~ll~~lk~~~~~~~~~qiilmSATl~~~~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 492 (1044)
++|+++++++.++..++++|+|+||||++.+.|++||+++|++.++|+.|||+.+|..... .. .
T Consensus 194 ~~D~LL~lLk~il~~rpdLKlIlmSATld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~-------~~--~------- 257 (1283)
T TIGR01967 194 NIDFLLGYLKQLLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVE-------EQ--E------- 257 (1283)
T ss_pred cchhHHHHHHHHHhhCCCCeEEEEeCCcCHHHHHHHhcCCCEEEECCCcccceeEEecccc-------cc--c-------
Confidence 9999999999999889999999999999999999999999999999999999988853100 00 0
Q ss_pred cccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHH
Q 001615 493 RSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLD 572 (1044)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~ 572 (1044)
....+. .+.+..++..++. ...|+||||+||+++|+.+++
T Consensus 258 -----~~~~~~----------------------------------~~~i~~~I~~l~~-~~~GdILVFLpg~~EI~~l~~ 297 (1283)
T TIGR01967 258 -----DDDLDQ----------------------------------LEAILDAVDELFA-EGPGDILIFLPGEREIRDAAE 297 (1283)
T ss_pred -----chhhhH----------------------------------HHHHHHHHHHHHh-hCCCCEEEeCCCHHHHHHHHH
Confidence 000000 0113344555553 356999999999999999999
Q ss_pred HHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccc
Q 001615 573 QIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLAC 652 (1044)
Q Consensus 573 ~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~ 652 (1044)
.|..... ..+.|+++||+|++++|.++|+.+ +.+||||||||||+|||||+|+||||+|+++...||+.++++.
T Consensus 298 ~L~~~~~----~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~ 371 (1283)
T TIGR01967 298 ILRKRNL----RHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQR 371 (1283)
T ss_pred HHHhcCC----CCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccc
Confidence 9986421 357899999999999999999875 3589999999999999999999999999999999999999999
Q ss_pred cccccccHhhHHHhcccCCCCCCcEEEEecChhhHhhcCCCCCCccccCChHHHHHHHHhccCCchhhhhhcCCCCCCHH
Q 001615 653 LLPSWISKASAHQRRGRAGRVQPGVCYKLYPRIIHDAMLPYQLPEILRTPLQELCLHIKSLQLGTVGSFLSKALQPPDPL 732 (1044)
Q Consensus 653 l~~~~iS~a~~~QR~GRAGR~~~G~c~~L~t~~~~~~l~~~~~pei~r~~L~~~~L~~k~l~~~~~~~fl~~~~~pP~~~ 732 (1044)
|.+.|||+++|.||+|||||.++|+||+||++++|+.+++++.|||+|++|..+||++++++++++.+| .|++||+..
T Consensus 372 L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~~~~~~~PEIlR~~L~~viL~l~~lg~~di~~f--~fldpP~~~ 449 (1283)
T TIGR01967 372 LPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMLALRLGDIAAF--PFIEAPDPR 449 (1283)
T ss_pred cCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHhhhhccCcccccccHHHHHHHHHhcCCCCcccc--cCCCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHHcCCCCCCC---CcCccccccccccCChhhHHHHHHhhhccChHHHHHHHhcccCCCccccCcchHHHHH
Q 001615 733 AVQNAIELLKTIGALDDME---NLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVD 809 (1044)
Q Consensus 733 ~i~~al~~L~~lgal~~~~---~lT~lG~~l~~lpl~p~~~k~ll~~~~~~c~~~~l~iaa~l~~~~~f~~p~~~~~~~~ 809 (1044)
+|..|++.|..+||||+++ .||++|+.|+.||+||++||||+.|+.++|++++++|||+|++++||..|.+++.+++
T Consensus 450 ~i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp~~~p~~~~~~a~ 529 (1283)
T TIGR01967 450 AIRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDPRERPMEKQQAAD 529 (1283)
T ss_pred HHHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcCCCcchhHHHHH
Confidence 9999999999999999988 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCcHHHHHHHHHHHHHHhc---CchhHHHHhhhcCChHHHHHHHHHHHHHHHHHHhcCCccCCCCCCCCC
Q 001615 810 EAKRSFAGDSCSDHIALLKAFDGYKDAKR---NRRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKSKGPSAYN 886 (1044)
Q Consensus 810 ~~~~~~~~~~~sD~l~~l~~f~~~~~~~~---~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~~~n 886 (1044)
.++++|.. ..|||++++|+|+.|.+... .+..++||++||||+.+|+++.++++||.+++.++|+...
T Consensus 530 ~~~~~f~~-~~sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~~-------- 600 (1283)
T TIGR01967 530 QAHARFKD-PRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKLN-------- 600 (1283)
T ss_pred HHHHHhcC-CCCCHHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCcC--------
Confidence 99999974 67999999999999976431 2234789999999999999999999999999998887432
Q ss_pred CCCCCHHHHHHHHHHhccCcccccccCCcceeEEeccCceEEeCCCCcCCCCCCCCCCEEEEEEeeeccccccccccccC
Q 001615 887 RYSHDLEMVCAILCAGLYPNVVQCKRKGKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNIS 966 (1044)
Q Consensus 887 ~~~~~~~~v~~~L~ag~ypnva~~~~~g~~~~~~t~~~~~v~iHPsSvl~~~~~~~~~~ivy~e~~~ts~~~i~~~t~I~ 966 (1044)
.+..+.+.++++|++|||+|||+....+ .|.+..+..+.|||+|++++. +++||||+|++.|++.|++.+|.|+
T Consensus 601 ~~~~~~~~i~~~l~~g~~~~iA~~~~~~---~y~~~~g~~~~ihP~S~L~~~---~p~wvv~~elv~t~~~~ir~~a~I~ 674 (1283)
T TIGR01967 601 EEPADYDAIHKALLSGLLSQIGMKDEKH---EYDGARGRKFHIFPGSPLFKK---PPKWVMAAELVETSKLYARLVAKIE 674 (1283)
T ss_pred CCCccHHHHHHHHHHhhHHHHheeCCCC---cEEecCCcEEEECCCccccCC---CCCEEEEeeecccchheEeeeccCC
Confidence 2234566789999999999999654332 244555677999999999763 5799999999999999999999999
Q ss_pred hHHHHHhcCCCC
Q 001615 967 EYALLLFGGNLI 978 (1044)
Q Consensus 967 ~~~lllfgg~~~ 978 (1044)
|.||..+++++.
T Consensus 675 p~wl~~~~~~~~ 686 (1283)
T TIGR01967 675 PEWVEPVAGHLI 686 (1283)
T ss_pred HHHHHHHhHHHh
Confidence 999998888764
No 8
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.9e-106 Score=961.70 Aligned_cols=642 Identities=40% Similarity=0.599 Sum_probs=552.2
Q ss_pred HHHHhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccH
Q 001615 261 RQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRR 340 (1044)
Q Consensus 261 ~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r 340 (1044)
.+.....+....+++.++..||++.++.+++.++.+++++||+||||||||||+|+++++..+ +...+|+||||||
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~----~~~g~I~~tQPRR 104 (845)
T COG1643 29 GMDARSRSANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL----GIAGKIGCTQPRR 104 (845)
T ss_pred hhhhhhcccccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc----ccCCeEEecCchH
Confidence 344445566778899999999999999999999999999999999999999999999999986 3356999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHH
Q 001615 341 ISAISVAARVSSERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLII 420 (1044)
Q Consensus 341 ~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~ 420 (1044)
++|.++|+||++++++.+|..|||.+|++++++++|+|.|||+|+|+++++.|+.|+.|++|||||||||++++|+++++
T Consensus 105 lAArsvA~RvAeel~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgl 184 (845)
T COG1643 105 LAARSVAERVAEELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGL 184 (845)
T ss_pred HHHHHHHHHHHHHhCCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcccCC-cccEEEcccCCChHHHHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCcccccccccccccccccc
Q 001615 421 LRDLLPRRP-DLRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDS 499 (1044)
Q Consensus 421 lk~~~~~~~-~~qiilmSATl~~~~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (1044)
++.++..++ |+|+|+||||+|.+.|++||+++|++.++||+|||+++|.+....
T Consensus 185 lk~~~~~rr~DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~------------------------- 239 (845)
T COG1643 185 LKDLLARRRDDLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEA------------------------- 239 (845)
T ss_pred HHHHHhhcCCCceEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCc-------------------------
Confidence 999777555 899999999999999999999999999999999999999753210
Q ss_pred chhh-hhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccc
Q 001615 500 KKDH-LTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNK 578 (1044)
Q Consensus 500 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~ 578 (1044)
+. +. +-+...+. ++..+..|+||||+||.++|+.+++.|.+..
T Consensus 240 --d~~l~---------------------------------~ai~~~v~-~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~ 283 (845)
T COG1643 240 --DYILL---------------------------------DAIVAAVD-IHLREGSGSILVFLPGQREIERTAEWLEKAE 283 (845)
T ss_pred --chhHH---------------------------------HHHHHHHH-HhccCCCCCEEEECCcHHHHHHHHHHHHhcc
Confidence 00 00 01223333 3335668999999999999999999999722
Q ss_pred cCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccc
Q 001615 579 FLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWI 658 (1044)
Q Consensus 579 ~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~i 658 (1044)
+ + ..+.|+|+||.|+.++|.+||+..+.|++|||+||||||||||||+|+||||+|+.|...||+.++++.|.++||
T Consensus 284 l-~--~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~I 360 (845)
T COG1643 284 L-G--DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPI 360 (845)
T ss_pred c-c--CCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEe
Confidence 2 1 468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHhhHHHhcccCCCCCCcEEEEecChhhHhhcCCCCCCccccCChHHHHHHHHhccCC-chhhhhhcCCCCCCHHHHHHH
Q 001615 659 SKASAHQRRGRAGRVQPGVCYKLYPRIIHDAMLPYQLPEILRTPLQELCLHIKSLQLG-TVGSFLSKALQPPDPLAVQNA 737 (1044)
Q Consensus 659 S~a~~~QR~GRAGR~~~G~c~~L~t~~~~~~l~~~~~pei~r~~L~~~~L~~k~l~~~-~~~~fl~~~~~pP~~~~i~~a 737 (1044)
|||++.||+|||||+.||+|||||++++|..|+.++.|||+|++|+.++|+++++|++ ++..| .|+|||+..++..|
T Consensus 361 SqAsA~QRaGRAGR~~pGicyRLyse~~~~~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f--~fld~P~~~~i~~A 438 (845)
T COG1643 361 SKASADQRAGRAGRTGPGICYRLYSEEDFLAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPF--PFLDPPPEAAIQAA 438 (845)
T ss_pred chhhhhhhccccccCCCceEEEecCHHHHHhcccCCChhhhhcchHHHHHHHHhcCCCCCcccC--ccCCCCChHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999996 99999 99999999999999
Q ss_pred HHHHHHcCCCCCCCCcCccccccccccCChhhHHHHHHhhhccChHHHHHHHhcccCCC---ccccCcchHH---HHHHH
Q 001615 738 IELLKTIGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRN---PFVLPVNMQK---EVDEA 811 (1044)
Q Consensus 738 l~~L~~lgal~~~~~lT~lG~~l~~lpl~p~~~k~ll~~~~~~c~~~~l~iaa~l~~~~---~f~~p~~~~~---~~~~~ 811 (1044)
++.|..+||||.++.||++|+.|+.||+||++++||+.|..++|++++++|||+|++++ .|..+.+.++ +.+.+
T Consensus 439 ~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~~~~~~~~ 518 (845)
T COG1643 439 LTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRTAQDLL 518 (845)
T ss_pred HHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 6887776655 44444
Q ss_pred Hh-hcC--CCCCCcHHHHHHHHHHHHHHhcC---chhHHHHhhhcCChHHHHHHHHHHHHHHHHHHh-cCCccCCCCCCC
Q 001615 812 KR-SFA--GDSCSDHIALLKAFDGYKDAKRN---RRERDFCWENFLSPITLQMMEDMRSQFLDLLSD-IGFVDKSKGPSA 884 (1044)
Q Consensus 812 ~~-~~~--~~~~sD~l~~l~~f~~~~~~~~~---~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~-~~~~~~~~~~~~ 884 (1044)
+. .+. .+..+||++++++|..|...+.. -...+||..++++.++|..+..++.+++..+.. .+.+........
T Consensus 519 ~~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 598 (845)
T COG1643 519 KRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRILAAAEIDE 598 (845)
T ss_pred HHHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhccccchhhhcccCc
Confidence 42 222 23579999999999999876421 135689999999999999999999998887766 443322111100
Q ss_pred ----------CCCCCCCHHHHHHHHHHhccCcccccccCCcceeEEeccCceEEeCCCCcCCCCCCCCCCEEEEEEeeec
Q 001615 885 ----------YNRYSHDLEMVCAILCAGLYPNVVQCKRKGKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKT 954 (1044)
Q Consensus 885 ----------~n~~~~~~~~v~~~L~ag~ypnva~~~~~g~~~~~~t~~~~~v~iHPsSvl~~~~~~~~~~ivy~e~~~t 954 (1044)
.......|+.+..++++|++.|++.....+.....+ ..+..|.+||+|+.. ....++|++|++.+++
T Consensus 599 ~~~~~~~~~~~~~~~~~~d~~~~~l~a~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~v~~--~~~~~~~~~~~~~~~~ 675 (845)
T COG1643 599 DEWAAQHLPEHCYSEPIWDDIRGALAAGRKLNIAQLQLDGRPYVTL-SDNTPVFAHPSSVRL--GLVLLEWIKYAEFLRT 675 (845)
T ss_pred chhhhhhhhhhhccchhHHHHhhhhhhheecceeeeeccccccccC-CCCceeEecchhHhh--cccCcchHHHHHHHHH
Confidence 000011578899999999999999765544322211 236789999999622 2235789999999999
Q ss_pred cccccc-----------cccccChHHHHHhcC
Q 001615 955 NNINVY-----------DSTNISEYALLLFGG 975 (1044)
Q Consensus 955 s~~~i~-----------~~t~I~~~~lllfgg 975 (1044)
++.|++ .++.+.+.||.-+..
T Consensus 676 ~~~~~~~~~~~~~~~~~~l~~~~~~wL~~~~~ 707 (845)
T COG1643 676 RKGYLREGRGERWPDVQTLIELLKLWLKEQVK 707 (845)
T ss_pred HHHHHhhcccccCcccchHhhhHHHhhhhhcc
Confidence 999999 477777788765443
No 9
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-101 Score=864.07 Aligned_cols=634 Identities=33% Similarity=0.502 Sum_probs=540.2
Q ss_pred hhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCC-CcEEEEEcccHHHHHHHH
Q 001615 269 DSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGA-DCNIICTQPRRISAISVA 347 (1044)
Q Consensus 269 ~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~-~~~ilv~~P~r~la~qva 347 (1044)
.+..++.+.|..|||..--.+|+++|..|.+|||||+||||||||+|||+++..+...... +..|-+|||||.+|+.+|
T Consensus 243 ~R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamA 322 (1172)
T KOG0926|consen 243 SRPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMA 322 (1172)
T ss_pred cCcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999988764332 348999999999999999
Q ss_pred HHHHHHhCCCCCcEEEEEEeccccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHccc
Q 001615 348 ARVSSERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPR 427 (1044)
Q Consensus 348 ~rv~~~~~~~~g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~ 427 (1044)
+||+.|++. .|..||||||++....+.|.|.|||+|+||+.+++|..|..|+.|||||||||++++|+|+++|.++.+.
T Consensus 323 kRVa~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~L 401 (1172)
T KOG0926|consen 323 KRVAFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPL 401 (1172)
T ss_pred HHHHHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHH
Confidence 999999998 8999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred C----------CcccEEEcccCCChHHHH---hhhCC-CCeecCCCCccccceeehHHHHHhhhcccCcccccccccccc
Q 001615 428 R----------PDLRLILMSATINADLFS---KYFGN-APTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRR 493 (1044)
Q Consensus 428 ~----------~~~qiilmSATl~~~~~~---~~f~~-~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 493 (1044)
| ..+|+|+||||+-.+.|. ..|.. +|++.|+.|.|||.++|-...
T Consensus 402 R~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT--------------------- 460 (1172)
T KOG0926|consen 402 RQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRT--------------------- 460 (1172)
T ss_pred HHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCC---------------------
Confidence 3 368999999999888877 45653 689999999999999984310
Q ss_pred ccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHH
Q 001615 494 SRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQ 573 (1044)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~ 573 (1044)
..|.+.+.| .-.+.||+.-++|.||||+.|..+++.|++.
T Consensus 461 ------~~DYi~eAf----------------------------------rKtc~IH~kLP~G~ILVFvTGQqEV~qL~~k 500 (1172)
T KOG0926|consen 461 ------PDDYIAEAF----------------------------------RKTCKIHKKLPPGGILVFVTGQQEVDQLCEK 500 (1172)
T ss_pred ------CchHHHHHH----------------------------------HHHHHHhhcCCCCcEEEEEeChHHHHHHHHH
Confidence 112222222 1345678888999999999999999999999
Q ss_pred HHcccc--------------------------------------------------------------------------
Q 001615 574 IKVNKF-------------------------------------------------------------------------- 579 (1044)
Q Consensus 574 L~~~~~-------------------------------------------------------------------------- 579 (1044)
|+....
T Consensus 501 LRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~ng 580 (1172)
T KOG0926|consen 501 LRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNG 580 (1172)
T ss_pred HHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccC
Confidence 875200
Q ss_pred ------------------CCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcc
Q 001615 580 ------------------LGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKE 641 (1044)
Q Consensus 580 ------------------~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~ 641 (1044)
......+.|+|||+-|+.++|.+||+..+.|.|-+|||||||||+||||+|+||||+|..|+
T Consensus 581 e~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~ 660 (1172)
T KOG0926|consen 581 EPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKE 660 (1172)
T ss_pred CcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhh
Confidence 00123678999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccccccccccHhhHHHhcccCCCCCCcEEEEecChhhHh-hcCCCCCCccccCChHHHHHHHHhccCCchhh
Q 001615 642 TSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRIIHD-AMLPYQLPEILRTPLQELCLHIKSLQLGTVGS 720 (1044)
Q Consensus 642 ~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~~G~c~~L~t~~~~~-~l~~~~~pei~r~~L~~~~L~~k~l~~~~~~~ 720 (1044)
..||..++++++...|||+|++-||+|||||.+||+|||||+...|+ .|.++..|||++.|.++++|++|+|++..+.+
T Consensus 661 R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKsMnI~kVvn 740 (1172)
T KOG0926|consen 661 RLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKSMNIDKVVN 740 (1172)
T ss_pred hccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHhcCccceec
Confidence 99999999999999999999999999999999999999999999997 79999999999999999999999999999999
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHcCCCCCCCCcCccccccccccCChhhHHHHHHhhhccChHHHHHHHhcccCCCcccc
Q 001615 721 FLSKALQPPDPLAVQNAIELLKTIGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVL 800 (1044)
Q Consensus 721 fl~~~~~pP~~~~i~~al~~L~~lgal~~~~~lT~lG~~l~~lpl~p~~~k~ll~~~~~~c~~~~l~iaa~l~~~~~f~~ 800 (1044)
| .|+.||...+++.|...|..+||||.+|.||+||+.|+.|||.|+++|||+.+...+|+.-++.++++|++..||+.
T Consensus 741 F--PFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy~i~lvsaLsv~e~~i~ 818 (1172)
T KOG0926|consen 741 F--PFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPYNIALVSALSVYEVLIV 818 (1172)
T ss_pred C--CCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHHhhcchhHHHHHHHHHhccchhhh
Confidence 9 99999999999999999999999999999999999999999999999999999999999999999999999998863
Q ss_pred Cc-------------ch-------------------HHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHhh
Q 001615 801 PV-------------NM-------------------QKEVDEAKRSFAGDSCSDHIALLKAFDGYKDAKRNRRERDFCWE 848 (1044)
Q Consensus 801 p~-------------~~-------------------~~~~~~~~~~~~~~~~sD~l~~l~~f~~~~~~~~~~~~~~~c~~ 848 (1044)
-. ++ +....+++.+|. +..||-|+++.|..++..+. +...||..
T Consensus 819 ~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~-~l~sd~l~Ll~Av~a~ey~~---~~~rfc~~ 894 (1172)
T KOG0926|consen 819 AASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFS-NLDSDALVLLSAVSAAEYAE---NGMRFCEA 894 (1172)
T ss_pred hhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhc-cCCccHHHHHHHHHHHHhhh---hcchhHHh
Confidence 11 11 111223555665 35689999999999988763 33459999
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCccC--CCCCCCCCCCCCCHHHHHHHHHHhccCcccccccC-CcceeEEeccCc
Q 001615 849 NFLSPITLQMMEDMRSQFLDLLSDIGFVDK--SKGPSAYNRYSHDLEMVCAILCAGLYPNVVQCKRK-GKRAVFYTKEVG 925 (1044)
Q Consensus 849 ~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~--~~~~~~~n~~~~~~~~v~~~L~ag~ypnva~~~~~-g~~~~~~t~~~~ 925 (1044)
|+|..++|.++.++|+||..++......+. +-....--....+..+++.+|||||-..||+.... .+. .+.-..
T Consensus 895 ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~ppt~~q~~lLrQ~i~Ag~~DrVArk~~~~~y~---~~~i~~ 971 (1172)
T KOG0926|consen 895 NGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPPTDTQAKLLRQMICAGFADRVARKVDATEYD---AAKIQE 971 (1172)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCchHHHHHHHHHHHHHHHHHHHHhccccccc---hhhhcC
Confidence 999999999999999999998874322110 00000000112345688999999999999963221 111 123356
Q ss_pred eEEeCCCCcCCCCCCCCCCEEEEEEeeecccccccc-ccccChHHHHHhcCC
Q 001615 926 QVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYD-STNISEYALLLFGGN 976 (1044)
Q Consensus 926 ~v~iHPsSvl~~~~~~~~~~ivy~e~~~ts~~~i~~-~t~I~~~~lllfgg~ 976 (1044)
.|+||+.|++++. .|+||+|.|++.|...|+.. +|.|.|.|++...+.
T Consensus 972 ~~fl~~~svl~~~---ape~viY~el~~~~~~~~~~~v~~v~pewl~~~~~s 1020 (1172)
T KOG0926|consen 972 PVFLHRWSVLINS---APELVIYQELLLTNRPYMHGGVTAVRPEWLLNHAKS 1020 (1172)
T ss_pred ceeeeehhhhhcc---CccceehhhhhhcCCcccccceEEEchHHHHhhhhh
Confidence 7999999999763 46999999999997777665 999999999987663
No 10
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=4.2e-91 Score=790.79 Aligned_cols=762 Identities=38% Similarity=0.657 Sum_probs=655.5
Q ss_pred HhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHH
Q 001615 264 KLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISA 343 (1044)
Q Consensus 264 ~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la 343 (1044)
+......+..++++|..||+..+..++++++..+++++|-++||||||||+.++||+..+.++.+....+.+.||||+.|
T Consensus 360 ~~~~d~e~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisa 439 (1282)
T KOG0921|consen 360 RFKRDEALDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISA 439 (1282)
T ss_pred hhhcccchhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccch
Confidence 45667788899999999999999999999999999999999999999999999999999999888888999999999999
Q ss_pred HHHHHHHHHHhCCCCCcEEEEEEeccccCC-CCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHH
Q 001615 344 ISVAARVSSERGENLGETVGYQIRLESKRS-AQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILR 422 (1044)
Q Consensus 344 ~qva~rv~~~~~~~~g~~vgy~ir~~~~~~-~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk 422 (1044)
+++++||+.++++.+|.+|||++|+++.++ +-..|++||-|.|++++.+. +..++|+|+||+|||++++||++.+++
T Consensus 440 isiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g--lrg~sh~i~deiherdv~~dfll~~lr 517 (1282)
T KOG0921|consen 440 ISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG--LRGISHVIIDEIHERDVDTDFVLIVLR 517 (1282)
T ss_pred HHHHHHHHHhhHHhhcccccccccccccccccccceeeeccchhhhhhhhc--ccccccccchhhhhhccchHHHHHHHH
Confidence 999999999999999999999999999875 45679999999999999654 688999999999999999999999999
Q ss_pred HHcccCCcccEEEcccCCChHHHHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccchh
Q 001615 423 DLLPRRPDLRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKD 502 (1044)
Q Consensus 423 ~~~~~~~~~qiilmSATl~~~~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (1044)
.+....+++++++||||+|.+.|..||+.+|.+.+.++++||..+|+++++..+.+........-. + +.+
T Consensus 518 ~m~~ty~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~-------k---~~~ 587 (1282)
T KOG0921|consen 518 EMISTYRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKR-------K---KDD 587 (1282)
T ss_pred hhhccchhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccch-------h---hcc
Confidence 999999999999999999999999999999999999999999999999998887766543221100 0 000
Q ss_pred hhhhhhhcc----cccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccc
Q 001615 503 HLTALFEDV----DIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNK 578 (1044)
Q Consensus 503 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~ 578 (1044)
.......+. .-...-..|...++..+.......+.+.++++++.+|....-.|.||||+|++..|..|..+|....
T Consensus 588 ~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~ 667 (1282)
T KOG0921|consen 588 DEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQ 667 (1282)
T ss_pred cccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhh
Confidence 000000000 0000113455666777777777888899999999999988889999999999999999999999988
Q ss_pred cCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccc
Q 001615 579 FLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWI 658 (1044)
Q Consensus 579 ~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~i 658 (1044)
.+++...+.++++|+.++..+|++||+..+.|+.|||++||+++++|||.|+++|||.+..+.+.|-..+++....++|.
T Consensus 668 ~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~ 747 (1282)
T KOG0921|consen 668 EFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWA 747 (1282)
T ss_pred hhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecc
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHhhHHHhcccCCCCCCcEEEEecChhhHhhcCCCCCCccccCChHHHHHHHHhccCCchhhhhhcCCCCCCHHHHHHHH
Q 001615 659 SKASAHQRRGRAGRVQPGVCYKLYPRIIHDAMLPYQLPEILRTPLQELCLHIKSLQLGTVGSFLSKALQPPDPLAVQNAI 738 (1044)
Q Consensus 659 S~a~~~QR~GRAGR~~~G~c~~L~t~~~~~~l~~~~~pei~r~~L~~~~L~~k~l~~~~~~~fl~~~~~pP~~~~i~~al 738 (1044)
|+-+.+||.||+||+++|.||++.++..|+.+.++..|||.|.+|.++.|.+|.+.+.++..|+...++||+.++|..+-
T Consensus 748 sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e 827 (1282)
T KOG0921|consen 748 SKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAE 827 (1282)
T ss_pred cccchHhhcccCceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCcCccccccccccCChhhHHHHHHhhhccChHHHHHHHhcccCCCccccCcchHHHHHHHHhhcCCC
Q 001615 739 ELLKTIGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGD 818 (1044)
Q Consensus 739 ~~L~~lgal~~~~~lT~lG~~l~~lpl~p~~~k~ll~~~~~~c~~~~l~iaa~l~~~~~f~~p~~~~~~~~~~~~~~~~~ 818 (1044)
..|..++++|.++.+|+||+.++.+|+.|+++||++.+..++|.+-++.+|+.+++..||+.-.-........++.|+++
T Consensus 828 ~~l~~m~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~~~g~ 907 (1282)
T KOG0921|consen 828 AVLREMGALDANDELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRKFAGN 907 (1282)
T ss_pred HHHHHhhhhhccCcccchhhhhhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccccchhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999888874322222223334455555
Q ss_pred CCCcHHHHHHHHHHHHHHhcC--chhHHHHhhhcCChHHHHHHHHHHHHHHHHHHhcCCccCCCCC--CCCCCCCCCHHH
Q 001615 819 SCSDHIALLKAFDGYKDAKRN--RRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKSKGP--SAYNRYSHDLEM 894 (1044)
Q Consensus 819 ~~sD~l~~l~~f~~~~~~~~~--~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~--~~~n~~~~~~~~ 894 (1044)
.+|||.+...+-+.|+.+... -.+++||..+.++...|+...+++.||.+.|+.++|+...... ...|....+..+
T Consensus 908 kfsdhva~~~v~q~~r~~~q~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~q~~fpe~~~~~~~v~~ng~d~~l~~ 987 (1282)
T KOG0921|consen 908 KFSDHVAIVSVIQGYREAVQMGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLRQCSFPEDILFDISVNVNGPDRELNL 987 (1282)
T ss_pred ccccchhhhhhhhhhHHHhhhhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHHhccCccccccceeeccCCCCchhHH
Confidence 555555555554444433221 2367899999999999999999999999999988876432111 123333445667
Q ss_pred HHHHHHHhccCcccccccCCcceeEEeccCceEEeCCCCcCCC----CCCCCCCEEEEEEeeeccccccccccccChHHH
Q 001615 895 VCAILCAGLYPNVVQCKRKGKRAVFYTKEVGQVALHPSSVNAN----QNNFPLPYMVYSEMVKTNNINVYDSTNISEYAL 970 (1044)
Q Consensus 895 v~~~L~ag~ypnva~~~~~g~~~~~~t~~~~~v~iHPsSvl~~----~~~~~~~~ivy~e~~~ts~~~i~~~t~I~~~~l 970 (1044)
+.+.||+++|||++... +++..+ |.+.+...||-+|+|.. .-.+|+||+||.|+++|..+..+..|.|+|+.|
T Consensus 988 ~~~lL~~~lypn~~~y~--ekrkvL-tTe~~~alihk~Svncp~S~qdM~fPsPFFVFGEKIRTRAIS~K~MslVsPLQL 1064 (1282)
T KOG0921|consen 988 MRSLLVMALYPNVAYYV--EKRKVL-TTEQSSALIHKYSVNCPNSRQEMDFPSPFFVFGEKIRTRAISCKQMSLVSPLQL 1064 (1282)
T ss_pred HHHHHHhhcCCccceec--cceeEE-eecchhhhhhhhcccCCCcccccCCCCceeeechhhhhheecccCccccChHHH
Confidence 88999999999998433 344444 44566778888887642 125899999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCCeEEeCcEEEeecCHHHHHHHHHHHHHHHHHHHHHHcCCCCC--CCcchhHHHHHHHHH
Q 001615 971 LLFGGNLIPSKTGEGIEMLGGYLHFSASKTVLELIRKLRGELDKLLNRKIEDPRVD--LSVEGKAVVSAVVEL 1041 (1044)
Q Consensus 971 llfgg~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~lR~~ld~ll~~k~~~p~~~--~~~~~~~~l~~i~~l 1041 (1044)
+|||.+.+.+ .+++|+.+|+||.|.++.+.|+.|..||.+|++|+-...+||..- +.+..+++|.+|.++
T Consensus 1065 LLF~SrKVqs-dgq~IV~VDdWIklqIshEaAAcItgLr~AmEaLvvev~knPaiIsqLdpvnarllnmiRdI 1136 (1282)
T KOG0921|consen 1065 LLFGSRKVQS-DGQGIVRVDDWIKLQISHEAAACITGLRPAMEALVVEVCKNPAIISQLDPVNARLLNMIRDI 1136 (1282)
T ss_pred hhhhhhhccc-cCcceEEeeceeeEeccHHHHHHHhhhHHHHHHHHHHHhcChhHhhccCchhHHHHHHHHHh
Confidence 9999998876 467798999999999999999999999999999999999999863 566778899888765
No 11
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3e-88 Score=826.26 Aligned_cols=568 Identities=30% Similarity=0.451 Sum_probs=472.6
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCc
Q 001615 281 LPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGE 360 (1044)
Q Consensus 281 lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~ 360 (1044)
|||+.+..++++++.+++++|++|+|||||||++|+++++... ..++|+|++|||++|.|+++++++++++.+|.
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~ 75 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-----IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQ 75 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-----cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCc
Confidence 7999999999999999999999999999999999999998763 24689999999999999999999999999999
Q ss_pred EEEEEEeccccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcc-cCCcccEEEcccC
Q 001615 361 TVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP-RRPDLRLILMSAT 439 (1044)
Q Consensus 361 ~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~-~~~~~qiilmSAT 439 (1044)
.|||.++++...+.+++|+|+|+|+|++++..++.|+++++|||||+|||++++|+++.+++.+.. .++++|+|+||||
T Consensus 76 ~VGy~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSAT 155 (819)
T TIGR01970 76 TVGYRVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSAT 155 (819)
T ss_pred EEEEEEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCC
Confidence 999999999988888999999999999999999999999999999999999999999988887765 5789999999999
Q ss_pred CChHHHHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhhhhcccccccccc
Q 001615 440 INADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKN 519 (1044)
Q Consensus 440 l~~~~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (1044)
++.+.+.+||++++++.++|+.|||+.+|+.... .+.+.
T Consensus 156 l~~~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~---------------------------~~~~~-------------- 194 (819)
T TIGR01970 156 LDGERLSSLLPDAPVVESEGRSFPVEIRYLPLRG---------------------------DQRLE-------------- 194 (819)
T ss_pred CCHHHHHHHcCCCcEEEecCcceeeeeEEeecch---------------------------hhhHH--------------
Confidence 9999999999999999999999999988864100 00000
Q ss_pred hhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHH
Q 001615 520 YRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTIN 599 (1044)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~e 599 (1044)
+.+...+.+++. ...|+|||||||+++|+.+++.|.... ..++.++++||+|++++
T Consensus 195 -------------------~~v~~~l~~~l~-~~~g~iLVFlpg~~eI~~l~~~L~~~~----~~~~~v~pLHg~L~~~e 250 (819)
T TIGR01970 195 -------------------DAVSRAVEHALA-SETGSILVFLPGQAEIRRVQEQLAERL----DSDVLICPLYGELSLAA 250 (819)
T ss_pred -------------------HHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHhhc----CCCcEEEEecCCCCHHH
Confidence 002223334443 246899999999999999999998531 13688999999999999
Q ss_pred HHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCCCCcEEE
Q 001615 600 QREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCY 679 (1044)
Q Consensus 600 r~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~~G~c~ 679 (1044)
|.++|+.|++|.+||||||||||+|||||+|+||||+|+++...||+.++++.|.+.||||++|.||+|||||.++|+||
T Consensus 251 q~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cy 330 (819)
T TIGR01970 251 QDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEPGVCY 330 (819)
T ss_pred HHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecChhhHhhcCCCCCCccccCChHHHHHHHHhccCCchhhhhhcCCCCCCHHHHHHHHHHHHHcCCCCCCCCcCccccc
Q 001615 680 KLYPRIIHDAMLPYQLPEILRTPLQELCLHIKSLQLGTVGSFLSKALQPPDPLAVQNAIELLKTIGALDDMENLTPLGRH 759 (1044)
Q Consensus 680 ~L~t~~~~~~l~~~~~pei~r~~L~~~~L~~k~l~~~~~~~fl~~~~~pP~~~~i~~al~~L~~lgal~~~~~lT~lG~~ 759 (1044)
+||++++|..|.+++.|||++++|++++|+++.++..++.+| .|++||+..++..|++.|+.+||||++++||++|+.
T Consensus 331 rL~t~~~~~~l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~--~~l~~P~~~~i~~a~~~L~~lgald~~~~lT~~G~~ 408 (819)
T TIGR01970 331 RLWSEEQHQRLPAQDEPEILQADLSGLALELAQWGAKDPSDL--RWLDAPPSVALAAARQLLQRLGALDAQGRLTAHGKA 408 (819)
T ss_pred EeCCHHHHHhhhcCCCcceeccCcHHHHHHHHHcCCCChhhC--CCCCCcCHHHHHHHHHHHHHCCCCCCCCCcCHHHHH
Confidence 999999999999999999999999999999999999988888 899999999999999999999999999999999999
Q ss_pred cccccCChhhHHHHHHhhhccChHHHHHHHhcccCCCccccCcchHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHhcC
Q 001615 760 LCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDSCSDHIALLKAFDGYKDAKRN 839 (1044)
Q Consensus 760 l~~lpl~p~~~k~ll~~~~~~c~~~~l~iaa~l~~~~~f~~p~~~~~~~~~~~~~~~~~~~sD~l~~l~~f~~~~~~~~~ 839 (1044)
|+.||+||++||||+.|+.++|.+++++|||+|+.++++-. ..+|....+.+++...
T Consensus 409 ~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~~~------------------~~~d~~~~~~~~~~~~----- 465 (819)
T TIGR01970 409 MAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLPRQ------------------GGADLMNRLHRLQQGR----- 465 (819)
T ss_pred HHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCCCC------------------CcccHHHHHHHHhhcc-----
Confidence 99999999999999999999999999999999999987521 1368766666553210
Q ss_pred chhHHHHhhhcCChHHHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCCHHHHHHHHHHhccCcccccccCCcceeE
Q 001615 840 RRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKSKGPSAYNRYSHDLEMVCAILCAGLYPNVVQCKRKGKRAVF 919 (1044)
Q Consensus 840 ~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~~~n~~~~~~~~v~~~L~ag~ypnva~~~~~g~~~~~ 919 (1044)
...|. .+.++.+|+...+ +........ ..+.+ ...|++..||..... +++....|
T Consensus 466 ---~~~~~----------~~~~~~~~~~~~~---~~~~~~~~~------~~~~~--~g~lla~a~pdria~-~r~~~~~y 520 (819)
T TIGR01970 466 ---QGRGQ----------RAQQLAKKLRRRL---RFSQADSGA------IASHA--LGLLLALAFPDRIAK-RRGQPGRY 520 (819)
T ss_pred ---hhhHH----------HHHHHHHHHHHHh---CcCcCCCcc------cccch--HhHHHhhhChHhhee-ccCCCCeE
Confidence 01111 2334444544332 211000000 00111 233555567765422 22332234
Q ss_pred EeccCceEEeCCCCcCCCCCCCCCCEEEEEEeeec---cccccccccccChHHHHHh
Q 001615 920 YTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKT---NNINVYDSTNISEYALLLF 973 (1044)
Q Consensus 920 ~t~~~~~v~iHPsSvl~~~~~~~~~~ivy~e~~~t---s~~~i~~~t~I~~~~lllf 973 (1044)
....+..+.+++.|.+++ .+|++..++..+ ....|+..+.|++.|+.-.
T Consensus 521 ~l~~G~~~~l~~~~~l~~-----~~~l~~a~~~~~~~~~~~~i~~a~~i~~~~~~~~ 572 (819)
T TIGR01970 521 QLANGRGAVLSAEDALAR-----EPWLVAADLGEGQGKTAARILLAAPVDEALLRQV 572 (819)
T ss_pred ECCCCCeeEeCCCCcccC-----CCeEEEEEeeccCCccccceeeeccCCHHHHHHH
Confidence 445556799999998854 489999999733 2346778999999998643
No 12
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.7e-86 Score=813.31 Aligned_cols=557 Identities=29% Similarity=0.444 Sum_probs=466.6
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCC
Q 001615 280 KLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLG 359 (1044)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g 359 (1044)
.||++.+..++++++.+++++|++|+|||||||++|+++++.... .++|+|++|||++|.|+++++++++++.+|
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-----~~~ilvlqPrR~aA~qia~rva~~l~~~~g 77 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-----NGKIIMLEPRRLAARNVAQRLAEQLGEKPG 77 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-----CCeEEEECChHHHHHHHHHHHHHHhCcccC
Confidence 599999999999999999999999999999999999999986432 348999999999999999999999999999
Q ss_pred cEEEEEEeccccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcc-cCCcccEEEccc
Q 001615 360 ETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP-RRPDLRLILMSA 438 (1044)
Q Consensus 360 ~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~-~~~~~qiilmSA 438 (1044)
..|||.++++...+..++|+|+|||+|++++..++.|+++++|||||+|||++++|+++.+++.++. .++++|+|+|||
T Consensus 78 ~~VGy~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSA 157 (812)
T PRK11664 78 ETVGYRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSA 157 (812)
T ss_pred ceEEEEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEec
Confidence 9999999999988888999999999999999999999999999999999999999999998887765 578999999999
Q ss_pred CCChHHHHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhhhhccccccccc
Q 001615 439 TINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYK 518 (1044)
Q Consensus 439 Tl~~~~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (1044)
|++.+.+++||++++++.++|+.|||+.+|+.... .+.+.
T Consensus 158 Tl~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~---------------------------~~~~~------------- 197 (812)
T PRK11664 158 TLDNDRLQQLLPDAPVIVSEGRSFPVERRYQPLPA---------------------------HQRFD------------- 197 (812)
T ss_pred CCCHHHHHHhcCCCCEEEecCccccceEEeccCch---------------------------hhhHH-------------
Confidence 99999999999999999999999999988863100 00000
Q ss_pred chhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChH
Q 001615 519 NYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTI 598 (1044)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~ 598 (1044)
+.+...+..++. ...|+|||||||+++|+.+++.|.... ..++.+.++||+|+++
T Consensus 198 --------------------~~v~~~l~~~l~-~~~g~iLVFlpg~~ei~~l~~~L~~~~----~~~~~v~~Lhg~l~~~ 252 (812)
T PRK11664 198 --------------------EAVARATAELLR-QESGSLLLFLPGVGEIQRVQEQLASRV----ASDVLLCPLYGALSLA 252 (812)
T ss_pred --------------------HHHHHHHHHHHH-hCCCCEEEEcCCHHHHHHHHHHHHHhc----cCCceEEEeeCCCCHH
Confidence 002223333433 346899999999999999999998521 1367899999999999
Q ss_pred HHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCCCCcEE
Q 001615 599 NQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVC 678 (1044)
Q Consensus 599 er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~~G~c 678 (1044)
+|+++++.|++|++||||||||||+|||||+|++|||+|+++...||+.++++.|.+.|||+++|.||+|||||.++|+|
T Consensus 253 eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~c 332 (812)
T PRK11664 253 EQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGIC 332 (812)
T ss_pred HHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecChhhHhhcCCCCCCccccCChHHHHHHHHhccCCchhhhhhcCCCCCCHHHHHHHHHHHHHcCCCCCCCCcCcccc
Q 001615 679 YKLYPRIIHDAMLPYQLPEILRTPLQELCLHIKSLQLGTVGSFLSKALQPPDPLAVQNAIELLKTIGALDDMENLTPLGR 758 (1044)
Q Consensus 679 ~~L~t~~~~~~l~~~~~pei~r~~L~~~~L~~k~l~~~~~~~fl~~~~~pP~~~~i~~al~~L~~lgal~~~~~lT~lG~ 758 (1044)
|+||+++.|+.|.+++.|||+|++|++++|+++.++..++.+| .|++||+..++++|++.|+.+||||++++||++|+
T Consensus 333 yrL~t~~~~~~l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~--~~ld~P~~~~~~~A~~~L~~lgald~~g~lT~~G~ 410 (812)
T PRK11664 333 LHLYSKEQAERAAAQSEPEILHSDLSGLLLELLQWGCHDPAQL--SWLDQPPAAALAAAKRLLQQLGALDGQGRLTARGR 410 (812)
T ss_pred EEecCHHHHhhCccCCCCceeccchHHHHHHHHHcCCCCHHhC--CCCCCCCHHHHHHHHHHHHHCCCCCCCCCcCHHHH
Confidence 9999999999999999999999999999999999999888888 89999999999999999999999999999999999
Q ss_pred ccccccCChhhHHHHHHhhhccChH--HHHHHHhcccCCCccccCcchHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHH
Q 001615 759 HLCTLPVDPNIGKMLLMGAIFQCLN--PALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDSCSDHIALLKAFDGYKDA 836 (1044)
Q Consensus 759 ~l~~lpl~p~~~k~ll~~~~~~c~~--~~l~iaa~l~~~~~f~~p~~~~~~~~~~~~~~~~~~~sD~l~~l~~f~~~~~~ 836 (1044)
.|+.||+||++||||+.|+.++|.. .++.|||+|+.+++- . .+|....+..+.
T Consensus 411 ~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~~~~------------------~--~~d~~~~l~~~~----- 465 (812)
T PRK11664 411 KMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEPPRS------------------G--SSDLGVALSRKQ----- 465 (812)
T ss_pred HHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccCCCC------------------C--cccHHHHHHHHH-----
Confidence 9999999999999999999998753 677788888765320 0 145333332211
Q ss_pred hcCchhHHHHhhhcCChHHHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCCHHHHHHHHHHhccCcccccccCCcc
Q 001615 837 KRNRRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKSKGPSAYNRYSHDLEMVCAILCAGLYPNVVQCKRKGKR 916 (1044)
Q Consensus 837 ~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~~~n~~~~~~~~v~~~L~ag~ypnva~~~~~g~~ 916 (1044)
..|+ ..+.++.+||.... + . .+.+.+..+|++||.-+||+.+ +..
T Consensus 466 ------~~~~----------~~~~~~~~~~~~~~---~----~----------~~~~~~~~~la~aypdriA~~r--~~~ 510 (812)
T PRK11664 466 ------PHWQ----------QRAQQLLKRLNVRG---G----E----------ADSSLIAPLLALAFPDRIARRR--GQD 510 (812)
T ss_pred ------HHHH----------HHHHHHHHHHHhhc---c----c----------CChHHHHHHHHHHCHHHHhhhc--CCC
Confidence 1232 22333444443211 1 0 1233467788888777887643 322
Q ss_pred eeEEeccCceEEeCCCCcCCCCCCCCCCEEEEEEeeecc-c--cccccccccChHHHHHh
Q 001615 917 AVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTN-N--INVYDSTNISEYALLLF 973 (1044)
Q Consensus 917 ~~~~t~~~~~v~iHPsSvl~~~~~~~~~~ivy~e~~~ts-~--~~i~~~t~I~~~~lllf 973 (1044)
..|....+..+.+||+|.+++ .+|+|+.|++.++ + ..|+.++.|++.|+.-.
T Consensus 511 ~~~~l~~G~~a~l~~~~~l~~-----~~~lv~a~~~~~~~~~~~ri~~a~~l~~~~l~~~ 565 (812)
T PRK11664 511 GRYQLANGMGAMLDADDALSR-----HEWLIAPLLLQGSASPDARILLALPLDIDELVQR 565 (812)
T ss_pred CeEEeeCCCeEEECCCCcccC-----CCeEEEEEhhccCccccceeeEeeccCHHHHHHH
Confidence 233444556799999999864 4899999997552 3 34778999999998643
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2.7e-59 Score=558.77 Aligned_cols=401 Identities=22% Similarity=0.338 Sum_probs=311.0
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHH-----HHhc-----cCCCCcEEEEEcccHHHHHHHHHHHHHHh
Q 001615 285 KMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEE-----ELSS-----LRGADCNIICTQPRRISAISVAARVSSER 354 (1044)
Q Consensus 285 ~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~-----~~~~-----~~~~~~~ilv~~P~r~la~qva~rv~~~~ 354 (1044)
.+|+++++.+++++++|++|+||||||+|+||++++. .+.. ..+..++|+|++|||+||.|++.++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 3899999999999999999999999999999999874 2221 12335689999999999999999998876
Q ss_pred CCCCCcEEEEEEeccccC-------CCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHccc
Q 001615 355 GENLGETVGYQIRLESKR-------SAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPR 427 (1044)
Q Consensus 355 ~~~~g~~vgy~ir~~~~~-------~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~ 427 (1044)
+......+...+++.... ....+|+++|++.. .+.|+++++|||||||||...+|+++.+++.+...
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~------l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~ 320 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT------LNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDK 320 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc------ccccccCCEEEccccccCccchhHHHHHHHHhhhh
Confidence 542211122233332221 12567999998742 24678999999999999999999999999876543
Q ss_pred CCcccEEEcccCCCh--HHHHhhhCCCCeecCCCCc-cccceeehHHHHHhhhcccCccccccccccccccccccchhhh
Q 001615 428 RPDLRLILMSATINA--DLFSKYFGNAPTVHIPGLT-FPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHL 504 (1044)
Q Consensus 428 ~~~~qiilmSATl~~--~~~~~~f~~~~~i~v~g~~-~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1044)
. .|+++||||++. +.|.+||++++.+.+++++ +||+.+|+++.... .. ..+.
T Consensus 321 ~--rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~-----~~-----------------~~~y- 375 (675)
T PHA02653 321 I--RSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNP-----KN-----------------KRAY- 375 (675)
T ss_pred c--CEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCccc-----cc-----------------chhh-
Confidence 2 489999999964 4789999999999999986 99999987532100 00 0000
Q ss_pred hhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHh--ccCCCCEEEEeCCHHHHHHHHHHHHccccCCC
Q 001615 505 TALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICR--HEGDGAILVFLTGWNDISKLLDQIKVNKFLGD 582 (1044)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~--~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~ 582 (1044)
++ . ....++..+.. ...++++||||||+++|+.+++.|....
T Consensus 376 ---~~-------------~----------------~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~---- 419 (675)
T PHA02653 376 ---IE-------------E----------------EKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL---- 419 (675)
T ss_pred ---hH-------------H----------------HHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc----
Confidence 00 0 00111122221 1245799999999999999999998631
Q ss_pred CCCeEEEEecCCCChHHHHhhhCCC-CCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHh
Q 001615 583 PNKFLVLPLHGSMPTINQREIFDRP-PPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKA 661 (1044)
Q Consensus 583 ~~~~~i~~lH~~l~~~er~~v~~~f-~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a 661 (1044)
.++.+.++||+|++.++ +++.| ++|+++|||||||||||||||+|++|||+|+++... +..++ ..|||++
T Consensus 420 -~~~~v~~LHG~Lsq~eq--~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~--~~~g~----~~~iSka 490 (675)
T PHA02653 420 -PIYDFYIIHGKVPNIDE--ILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE--PFGGK----EMFISKS 490 (675)
T ss_pred -CCceEEeccCCcCHHHH--HHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCC--cccCc----ccccCHH
Confidence 25889999999998643 44444 689999999999999999999999999999877542 33332 5699999
Q ss_pred hHHHhcccCCCCCCcEEEEecChhhHhhcCCCCCCccccCC---hHHHHHHHHhccCCchhhhhhcCCCCCCHHHHHHHH
Q 001615 662 SAHQRRGRAGRVQPGVCYKLYPRIIHDAMLPYQLPEILRTP---LQELCLHIKSLQLGTVGSFLSKALQPPDPLAVQNAI 738 (1044)
Q Consensus 662 ~~~QR~GRAGR~~~G~c~~L~t~~~~~~l~~~~~pei~r~~---L~~~~L~~k~l~~~~~~~fl~~~~~pP~~~~i~~al 738 (1044)
+|+||+|||||.++|.||+||+++.+ .| |.+.+ |.+++|++|+++++... ++ |++||+.+++.+|+
T Consensus 491 sa~QRaGRAGR~~~G~c~rLyt~~~~-------~p-I~ri~~~~L~~~vL~lk~~g~~~~~-~~--~ldpP~~~~l~~A~ 559 (675)
T PHA02653 491 MRTQRKGRVGRVSPGTYVYFYDLDLL-------KP-IKRIDSEFLHNYILYAKYFNLTLPE-DL--FVIPSNLDRLRKTE 559 (675)
T ss_pred HHHHhccCcCCCCCCeEEEEECHHHh-------HH-HHHHhHHHHHHHHHHHHHcCCCCcc-cc--cCCCCCHHHHHHHH
Confidence 99999999999999999999999874 23 66665 88999999999996554 42 99999999999999
Q ss_pred HHHHHcCCCCCCCCcCcc--ccccccccCChhhHHHHHHhhh
Q 001615 739 ELLKTIGALDDMENLTPL--GRHLCTLPVDPNIGKMLLMGAI 778 (1044)
Q Consensus 739 ~~L~~lgal~~~~~lT~l--G~~l~~lpl~p~~~k~ll~~~~ 778 (1044)
+.|..+||+|+ +||.| |+.|+.+ +.||++++|+.
T Consensus 560 ~~L~~lga~~~--~l~~l~~~~~~~~~----~~~k~~~~g~~ 595 (675)
T PHA02653 560 EYIDSFNISIE--KWYEILSNYYVNML----EYAKIYVKGGI 595 (675)
T ss_pred HHHHHcCCCch--hhhhhhccccHHHH----HHhHHHhcccH
Confidence 99999998865 79999 9999999 99999999864
No 14
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-50 Score=457.23 Aligned_cols=344 Identities=19% Similarity=0.256 Sum_probs=273.8
Q ss_pred HHHHhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhc----cCCCCcEEEEE
Q 001615 261 RQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSS----LRGADCNIICT 336 (1044)
Q Consensus 261 ~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~----~~~~~~~ilv~ 336 (1044)
.++.+..+.....+++.+..--++++|.+.|+.+++|+|++.+|.||||||++|.+|++.++... .++..+++||+
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 66777788888888899999999999999999999999999999999999999999999998752 24567899999
Q ss_pred cccHHHHHHHHHHHHHHhCCCCC--cEEEEE-E---eccccCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhh
Q 001615 337 QPRRISAISVAARVSSERGENLG--ETVGYQ-I---RLESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHE 409 (1044)
Q Consensus 337 ~P~r~la~qva~rv~~~~~~~~g--~~vgy~-i---r~~~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHe 409 (1044)
+||||||.|+.+.+.+. +...+ ..+-|+ . .+......+.+|+|+|||+|++++..+. .|++++|+|+||||
T Consensus 172 ~PTRELA~QV~~~~~~~-~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD- 249 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREF-GKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD- 249 (519)
T ss_pred cCcHHHHHHHHHHHHHH-cCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH-
Confidence 99999999998766554 44443 333333 1 1223344589999999999999999887 89999999999999
Q ss_pred ccchhHHHHHHHHHHccc-CCcccEEEcccCCChHH--H-HhhhCCCCeecCCCCccccceeehHHHHHhhhcccCcccc
Q 001615 410 RGMNEDFLLIILRDLLPR-RPDLRLILMSATINADL--F-SKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLD 485 (1044)
Q Consensus 410 R~~~~d~ll~~lk~~~~~-~~~~qiilmSATl~~~~--~-~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~ 485 (1044)
||++++|..++.+++.+. +++.|+|++|||++.+. + .+|+.+...+.+.+. ++.. ..
T Consensus 250 rMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~---------~~~~---------a~- 310 (519)
T KOG0331|consen 250 RMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNK---------KELK---------AN- 310 (519)
T ss_pred hhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecch---------hhhh---------hh-
Confidence 999999999999999888 67779999999999884 3 355553322222111 0000 00
Q ss_pred ccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHH
Q 001615 486 SFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWN 565 (1044)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~ 565 (1044)
..+.+..+. ....-....+.++|..+. ...++++||||.|++
T Consensus 311 ----------------~~i~qive~---------------------~~~~~K~~~l~~lL~~~~-~~~~~KvIIFc~tkr 352 (519)
T KOG0331|consen 311 ----------------HNIRQIVEV---------------------CDETAKLRKLGKLLEDIS-SDSEGKVIIFCETKR 352 (519)
T ss_pred ----------------cchhhhhhh---------------------cCHHHHHHHHHHHHHHHh-ccCCCcEEEEecchh
Confidence 000000000 001111223556666666 567889999999999
Q ss_pred HHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceecc
Q 001615 566 DISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYD 645 (1044)
Q Consensus 566 ~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd 645 (1044)
.+++|...|+. ..+.+.++||++++.||+.+++.|++|+.+||||||+|+||||||||++||||++|++.+
T Consensus 353 ~~~~l~~~l~~-------~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vE-- 423 (519)
T KOG0331|consen 353 TCDELARNLRR-------KGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVE-- 423 (519)
T ss_pred hHHHHHHHHHh-------cCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHH--
Confidence 99999999986 457899999999999999999999999999999999999999999999999999999666
Q ss_pred ccccccccccccccHhhHHHhcccCCCC-CCcEEEEecChhhHh
Q 001615 646 ALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIHD 688 (1044)
Q Consensus 646 ~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~~~ 688 (1044)
+|+||+|||||+ +.|.+|.||+...+.
T Consensus 424 ----------------dYVHRiGRTGRa~~~G~A~tfft~~~~~ 451 (519)
T KOG0331|consen 424 ----------------DYVHRIGRTGRAGKKGTAITFFTSDNAK 451 (519)
T ss_pred ----------------HHHhhcCccccCCCCceEEEEEeHHHHH
Confidence 999999999998 889999999987664
No 15
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.3e-46 Score=445.22 Aligned_cols=328 Identities=19% Similarity=0.241 Sum_probs=243.9
Q ss_pred HHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhcc---CCCCcEEEEEcccHHHHHHHHHHH
Q 001615 274 MLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSL---RGADCNIICTQPRRISAISVAARV 350 (1044)
Q Consensus 274 ~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~---~~~~~~ilv~~P~r~la~qva~rv 350 (1044)
.++..+...++++|.++|+.+++++++|++||||||||+++.++++.++.... .+.++.+||++|||+||.|+.+.+
T Consensus 144 ~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~ 223 (545)
T PTZ00110 144 SLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQC 223 (545)
T ss_pred HHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHH
Confidence 33444455667899999999999999999999999999999999998876432 234578999999999999999887
Q ss_pred HHHhCCCCCc--EEEEEEe----ccccCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccchhHHHHHHHHH
Q 001615 351 SSERGENLGE--TVGYQIR----LESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRD 423 (1044)
Q Consensus 351 ~~~~~~~~g~--~vgy~ir----~~~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~~d~ll~~lk~ 423 (1044)
.+... ..+. .+.|+-. .......+++|+|+|||+|+++|..+. .|.++++||||||| |.++++|...+.+.
T Consensus 224 ~~~~~-~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd-~mld~gf~~~i~~i 301 (545)
T PTZ00110 224 NKFGA-SSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEAD-RMLDMGFEPQIRKI 301 (545)
T ss_pred HHHhc-ccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHH-hhhhcchHHHHHHH
Confidence 76532 2222 2222210 011123468999999999999998765 78999999999999 88999998888777
Q ss_pred HcccCCcccEEEcccCCChHH--HH-hhhCCCCe-ecCCCCccccceeehHHHHHhhhcccCcccccccccccccccccc
Q 001615 424 LLPRRPDLRLILMSATINADL--FS-KYFGNAPT-VHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDS 499 (1044)
Q Consensus 424 ~~~~~~~~qiilmSATl~~~~--~~-~~f~~~~~-i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (1044)
+...+++.|+|+||||++.+. +. .++...++ +.+....... ...+.+...
T Consensus 302 l~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~-------------------~~~i~q~~~------- 355 (545)
T PTZ00110 302 VSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTA-------------------CHNIKQEVF------- 355 (545)
T ss_pred HHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCcccc-------------------CCCeeEEEE-------
Confidence 777788999999999998763 33 33433222 1111000000 000000000
Q ss_pred chhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHcccc
Q 001615 500 KKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKF 579 (1044)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~ 579 (1044)
..+ .......+..++..+.. ..+++||||++++.++.+++.|..
T Consensus 356 -------~~~------------------------~~~k~~~L~~ll~~~~~--~~~k~LIF~~t~~~a~~l~~~L~~--- 399 (545)
T PTZ00110 356 -------VVE------------------------EHEKRGKLKMLLQRIMR--DGDKILIFVETKKGADFLTKELRL--- 399 (545)
T ss_pred -------EEe------------------------chhHHHHHHHHHHHhcc--cCCeEEEEecChHHHHHHHHHHHH---
Confidence 000 00001113333433332 567999999999999999999986
Q ss_pred CCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceecccccccccccccccc
Q 001615 580 LGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWIS 659 (1044)
Q Consensus 580 ~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS 659 (1044)
.++.+..+||++++++|.++++.|++|..+|||||+++++|||||+|++||++++|. +
T Consensus 400 ----~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~------------------s 457 (545)
T PTZ00110 400 ----DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPN------------------Q 457 (545)
T ss_pred ----cCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCC------------------C
Confidence 456788999999999999999999999999999999999999999999999999999 5
Q ss_pred HhhHHHhcccCCCC-CCcEEEEecChhhH
Q 001615 660 KASAHQRRGRAGRV-QPGVCYKLYPRIIH 687 (1044)
Q Consensus 660 ~a~~~QR~GRAGR~-~~G~c~~L~t~~~~ 687 (1044)
.++|+||+|||||. ++|.||.||++++.
T Consensus 458 ~~~yvqRiGRtGR~G~~G~ai~~~~~~~~ 486 (545)
T PTZ00110 458 IEDYVHRIGRTGRAGAKGASYTFLTPDKY 486 (545)
T ss_pred HHHHHHHhcccccCCCCceEEEEECcchH
Confidence 55999999999999 78999999998654
No 16
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-47 Score=400.71 Aligned_cols=334 Identities=20% Similarity=0.234 Sum_probs=259.4
Q ss_pred HHHHhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccH
Q 001615 261 RQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRR 340 (1044)
Q Consensus 261 ~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r 340 (1044)
.+..+...+.+-+.++.-...-++++|.++||.++.|+++|..|+||||||.+|.+||+++++.+.+ ...++|+.|||
T Consensus 62 sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~--~~~~lVLtPtR 139 (476)
T KOG0330|consen 62 SFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK--LFFALVLTPTR 139 (476)
T ss_pred chhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC--CceEEEecCcH
Confidence 3455566666666666666777788999999999999999999999999999999999999997543 47899999999
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEe------ccccCCCCccEEEEchHHHHHHHhcCC--CCCccceEEechhhhccc
Q 001615 341 ISAISVAARVSSERGENLGETVGYQIR------LESKRSAQTRLLFCTTGVLLRQLVEDP--DLSCVSHLLVDEIHERGM 412 (1044)
Q Consensus 341 ~la~qva~rv~~~~~~~~g~~vgy~ir------~~~~~~~~~~I~v~T~g~Ll~~l~~~~--~L~~~~~lIiDEaHeR~~ 412 (1044)
|||.||++.+. .++...|..+..-+. .....+...+|+|||||+|.+++.+.. .|..++++|+|||| |-+
T Consensus 140 ELA~QI~e~fe-~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD-rlL 217 (476)
T KOG0330|consen 140 ELAQQIAEQFE-ALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD-RLL 217 (476)
T ss_pred HHHHHHHHHHH-HhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH-hhh
Confidence 99999998774 455555554432221 222345689999999999999998544 89999999999999 889
Q ss_pred hhHHHHHHHHHHcccCCcccEEEcccCCChHH--HH-hhhCCCCeecCCCCccccceeehHHHHHhhhcccCcccccccc
Q 001615 413 NEDFLLIILRDLLPRRPDLRLILMSATINADL--FS-KYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQG 489 (1044)
Q Consensus 413 ~~d~ll~~lk~~~~~~~~~qiilmSATl~~~~--~~-~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~ 489 (1044)
++||...+-+++-..+++.|++++|||++.+. +. .-+.++..+.++...--|
T Consensus 218 d~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv------------------------- 272 (476)
T KOG0330|consen 218 DMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTV------------------------- 272 (476)
T ss_pred hhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcch-------------------------
Confidence 99999887666666778899999999997663 32 222222222222111000
Q ss_pred ccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHH
Q 001615 490 NSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISK 569 (1044)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~ 569 (1044)
+.+.+.|-- +........+.+|++...+..+||||++....+.
T Consensus 273 ------------~~lkQ~ylf-------------------------v~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~ 315 (476)
T KOG0330|consen 273 ------------DHLKQTYLF-------------------------VPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRF 315 (476)
T ss_pred ------------HHhhhheEe-------------------------ccccccchhHHHHHHhhcCCcEEEEEeccchHHH
Confidence 011110000 0000012234455555567899999999999999
Q ss_pred HHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceecccccc
Q 001615 570 LLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNK 649 (1044)
Q Consensus 570 l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~ 649 (1044)
++-.|.. .++...+|||+|++..|..+|+.|++|.+.||||||||+||+|||.|++|||||+|....
T Consensus 316 la~~L~~-------lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~sk------ 382 (476)
T KOG0330|consen 316 LALLLRN-------LGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSK------ 382 (476)
T ss_pred HHHHHHh-------cCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHH------
Confidence 9999987 688899999999999999999999999999999999999999999999999999999665
Q ss_pred ccccccccccHhhHHHhcccCCCC-CCcEEEEecChh
Q 001615 650 LACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRI 685 (1044)
Q Consensus 650 ~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~ 685 (1044)
+|+||.||+||+ ++|+++.|.|..
T Consensus 383 ------------DYIHRvGRtaRaGrsG~~ItlVtqy 407 (476)
T KOG0330|consen 383 ------------DYIHRVGRTARAGRSGKAITLVTQY 407 (476)
T ss_pred ------------HHHHHcccccccCCCcceEEEEehh
Confidence 999999999999 899999999983
No 17
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-47 Score=419.99 Aligned_cols=365 Identities=17% Similarity=0.160 Sum_probs=280.5
Q ss_pred ccCCCCCCCCCCCcccccccCCccccccccCCCCCCCchHHHhHHHHHHHHHHHhccChhHHHHHHHhcCCCchHHHHHH
Q 001615 211 SSQGNVPVNDSGIESSEVARRPKLSVKVANTISPPQSDSAKERLNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEF 290 (1044)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~ 290 (1044)
...+.||++|+.+++ +.+|.++|. +++++++..+.+.+..+..+..++ -++++|+..
T Consensus 48 ~~~~~nfd~~~~i~v------~~~G~~~p~----~i~~f~~~~l~~~l~~ni~~~~~~-------------~ptpvQk~s 104 (482)
T KOG0335|consen 48 ISTGINFDKYNDIPV------KVSGRDVPP----HIPTFDEAILGEALAGNIKRSGYT-------------KPTPVQKYS 104 (482)
T ss_pred cchhhccCCccceee------eccCCccCC----CcccccccchhHHHhhcccccccc-------------CCCcceeec
Confidence 455679999999888 777888876 677888888888888776554444 346799999
Q ss_pred HHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccC--------CCCcEEEEEcccHHHHHHHHHHHHHHhCCCC-CcE
Q 001615 291 LKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLR--------GADCNIICTQPRRISAISVAARVSSERGENL-GET 361 (1044)
Q Consensus 291 i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~--------~~~~~ilv~~P~r~la~qva~rv~~~~~~~~-g~~ 361 (1044)
|+.+..|+++++||+||||||.+|++|+++.++.... +..+.+++++|||+||.|++++..+..+... -..
T Consensus 105 ip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~ 184 (482)
T KOG0335|consen 105 IPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSV 184 (482)
T ss_pred cceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceee
Confidence 9999999999999999999999999999999886532 1357899999999999999999998865432 222
Q ss_pred EEEEE----eccccCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccch-hHHHHHHHHHHcccC----Ccc
Q 001615 362 VGYQI----RLESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMN-EDFLLIILRDLLPRR----PDL 431 (1044)
Q Consensus 362 vgy~i----r~~~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~-~d~ll~~lk~~~~~~----~~~ 431 (1044)
+.|+- ........+++|+|||||+|.+++..+. .|+++.++|||||| |++| ++|...+-+++.... ...
T Consensus 185 ~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEAD-rMlD~mgF~p~Ir~iv~~~~~~~~~~~ 263 (482)
T KOG0335|consen 185 VVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEAD-RMLDEMGFEPQIRKIVEQLGMPPKNNR 263 (482)
T ss_pred eeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchH-HhhhhccccccHHHHhcccCCCCccce
Confidence 33332 1112233589999999999999999887 89999999999999 9999 999999988876532 378
Q ss_pred cEEEcccCCChHH--HHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhhhh
Q 001615 432 RLILMSATINADL--FSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFE 509 (1044)
Q Consensus 432 qiilmSATl~~~~--~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (1044)
|.+|||||++.+. +..+|-.. . ++.............+.+...|..+
T Consensus 264 qt~mFSAtfp~~iq~l~~~fl~~--------------~----yi~laV~rvg~~~~ni~q~i~~V~~------------- 312 (482)
T KOG0335|consen 264 QTLLFSATFPKEIQRLAADFLKD--------------N----YIFLAVGRVGSTSENITQKILFVNE------------- 312 (482)
T ss_pred eEEEEeccCChhhhhhHHHHhhc--------------c----ceEEEEeeeccccccceeEeeeecc-------------
Confidence 9999999998774 44444211 0 1111111112222222222111110
Q ss_pred cccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhcc---CCC-----CEEEEeCCHHHHHHHHHHHHccccCC
Q 001615 510 DVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHE---GDG-----AILVFLTGWNDISKLLDQIKVNKFLG 581 (1044)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~---~~g-----~iLVFl~~~~~i~~l~~~L~~~~~~~ 581 (1044)
.+++..++..+.... ..+ .+||||++++.+..++..|..
T Consensus 313 ----------------------------~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~----- 359 (482)
T KOG0335|consen 313 ----------------------------MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSS----- 359 (482)
T ss_pred ----------------------------hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhc-----
Confidence 111222333222211 234 899999999999999999987
Q ss_pred CCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHh
Q 001615 582 DPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKA 661 (1044)
Q Consensus 582 ~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a 661 (1044)
.++...++||..++.+|.+.++.|+.|...|+||||||+||||||+|++||+|++|+...
T Consensus 360 --~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d------------------ 419 (482)
T KOG0335|consen 360 --NGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADID------------------ 419 (482)
T ss_pred --CCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchh------------------
Confidence 567788899999999999999999999999999999999999999999999999999766
Q ss_pred hHHHhcccCCCC-CCcEEEEecC
Q 001615 662 SAHQRRGRAGRV-QPGVCYKLYP 683 (1044)
Q Consensus 662 ~~~QR~GRAGR~-~~G~c~~L~t 683 (1044)
+|+||+|||||. ..|.++.||.
T Consensus 420 ~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 420 DYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred hHHHhccccccCCCCceeEEEec
Confidence 999999999999 7899999998
No 18
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3.8e-44 Score=390.39 Aligned_cols=331 Identities=19% Similarity=0.182 Sum_probs=257.0
Q ss_pred hccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhcc-------CCCCcEEEEEc
Q 001615 265 LKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSL-------RGADCNIICTQ 337 (1044)
Q Consensus 265 ~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~-------~~~~~~ilv~~ 337 (1044)
.++...+.++++.-+..-++++|.++++..++++|+|.+|+||||||.+|+++++..+.... .-.++..++++
T Consensus 250 ~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiila 329 (673)
T KOG0333|consen 250 SGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILA 329 (673)
T ss_pred cCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeec
Confidence 33333333444444445567899999999999999999999999999999999998764322 12467899999
Q ss_pred ccHHHHHHHHHHHHHHhCCCCCc----EEEEEEeccc--cCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhc
Q 001615 338 PRRISAISVAARVSSERGENLGE----TVGYQIRLES--KRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHER 410 (1044)
Q Consensus 338 P~r~la~qva~rv~~~~~~~~g~----~vgy~ir~~~--~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR 410 (1044)
|||+||.||.+.-.++ +..+|. .||-.-..+. +.+.+|+|+++|||+|++.|.+.. .|+++.+||+|||+ |
T Consensus 330 ptReLaqqIeeEt~kf-~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldead-r 407 (673)
T KOG0333|consen 330 PTRELAQQIEEETNKF-GKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEAD-R 407 (673)
T ss_pred hHHHHHHHHHHHHHHh-cccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchh-h
Confidence 9999999998776543 333333 3343322233 457799999999999999997765 78999999999999 9
Q ss_pred cchhHHHHHHHHHHcccC-----C--------c------------ccEEEcccCCChH---HHHhhhCCCCeecCC--CC
Q 001615 411 GMNEDFLLIILRDLLPRR-----P--------D------------LRLILMSATINAD---LFSKYFGNAPTVHIP--GL 460 (1044)
Q Consensus 411 ~~~~d~ll~~lk~~~~~~-----~--------~------------~qiilmSATl~~~---~~~~~f~~~~~i~v~--g~ 460 (1044)
++|++|...+.+.+..+. | . .|.++||||+++. +...||..+.++.+. |+
T Consensus 408 miDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk 487 (673)
T KOG0333|consen 408 MIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGK 487 (673)
T ss_pred hhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCC
Confidence 999999999988875432 1 1 6899999999775 477899887776664 33
Q ss_pred ccccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHH
Q 001615 461 TFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGL 540 (1044)
Q Consensus 461 ~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 540 (1044)
..|.-... .+.+. .+-
T Consensus 488 ~~~rveQ~--------v~m~~--------------------------------------------------------ed~ 503 (673)
T KOG0333|consen 488 PTPRVEQK--------VEMVS--------------------------------------------------------EDE 503 (673)
T ss_pred CccchheE--------EEEec--------------------------------------------------------chH
Confidence 33321100 00000 000
Q ss_pred HHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecc
Q 001615 541 VESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNI 620 (1044)
Q Consensus 541 i~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTni 620 (1044)
....|..|+.+....+||||+++++.|+.+++.|.. .++.+..|||+-++++|+.++..|+.|...|+||||+
T Consensus 504 k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK-------~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDv 576 (673)
T KOG0333|consen 504 KRKKLIEILESNFDPPIIIFVNTKKGADALAKILEK-------AGYKVTTLHGGKSQEQRENALADFREGTGDILVATDV 576 (673)
T ss_pred HHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhh-------ccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecc
Confidence 122333444445677999999999999999999987 6799999999999999999999999999999999999
Q ss_pred cccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC-CCcEEEEecChhh
Q 001615 621 AESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (1044)
Q Consensus 621 ae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~ 686 (1044)
|++|||||||.+||||+++|.. ..|.||+|||||+ +.|+++.|+|+++
T Consensus 577 AgRGIDIpnVSlVinydmaksi------------------eDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 577 AGRGIDIPNVSLVINYDMAKSI------------------EDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred cccCCCCCccceeeecchhhhH------------------HHHHHHhccccccccCceeEEEeccch
Confidence 9999999999999999999944 4999999999999 7899999999876
No 19
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-43 Score=374.82 Aligned_cols=340 Identities=17% Similarity=0.216 Sum_probs=261.2
Q ss_pred CCCchHHH-hHHHHHHHHHHHhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHH
Q 001615 245 PQSDSAKE-RLNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEEL 323 (1044)
Q Consensus 245 ~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~ 323 (1044)
|.-.|+.. +..+++.+++.+..+.+ ++|+|.++|+.+++|+|++.+|+||+|||++++++-+.++.
T Consensus 217 P~ctFddAFq~~pevmenIkK~GFqK-------------PtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~ 283 (629)
T KOG0336|consen 217 PVCTFDDAFQCYPEVMENIKKTGFQK-------------PTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHID 283 (629)
T ss_pred CcCcHHHHHhhhHHHHHHHHhccCCC-------------CCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeee
Confidence 44455443 33455666665544443 35699999999999999999999999999999988776654
Q ss_pred hcc----CCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEE--ecc--ccCCCCccEEEEchHHHHHHHhcCC-
Q 001615 324 SSL----RGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQI--RLE--SKRSAQTRLLFCTTGVLLRQLVEDP- 394 (1044)
Q Consensus 324 ~~~----~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~i--r~~--~~~~~~~~I~v~T~g~Ll~~l~~~~- 394 (1044)
.+. ...++.+||+.|||+||.|+.-.+.++.....-..+-|+. |.+ .....+.+|++||||+|.++...+.
T Consensus 284 aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i 363 (629)
T KOG0336|consen 284 AQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVI 363 (629)
T ss_pred ccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCee
Confidence 332 2346789999999999999998888876544333333432 222 2234688999999999999988877
Q ss_pred CCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccCCChHH---HHhhhCCCCeecCCCCc----ccccee
Q 001615 395 DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINADL---FSKYFGNAPTVHIPGLT----FPVTDL 467 (1044)
Q Consensus 395 ~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSATl~~~~---~~~~f~~~~~i~v~g~~----~pv~~~ 467 (1044)
+|..+++||||||| |+++++|..++.|.++..+||.|+++.||||+... ..+|+.++-++.+..-. ..|...
T Consensus 364 ~l~siTYlVlDEAD-rMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~ 442 (629)
T KOG0336|consen 364 NLASITYLVLDEAD-RMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQN 442 (629)
T ss_pred eeeeeEEEEecchh-hhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeee
Confidence 89999999999999 99999999999999999999999999999998763 45777665444433211 111111
Q ss_pred ehHHHHHhhhcccCccccccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHH
Q 001615 468 FLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEY 547 (1044)
Q Consensus 468 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~ 547 (1044)
++-. .+.+ ..+++..
T Consensus 443 i~v~----------------------------------------------------------------~d~~-k~~~~~~ 457 (629)
T KOG0336|consen 443 IIVT----------------------------------------------------------------TDSE-KLEIVQF 457 (629)
T ss_pred EEec----------------------------------------------------------------ccHH-HHHHHHH
Confidence 1000 0000 1112222
Q ss_pred H-HhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccC
Q 001615 548 I-CRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSIT 626 (1044)
Q Consensus 548 i-~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~Gid 626 (1044)
+ .......++||||..+..++.|..-+.- .++..-.|||+..+.+|+.+++.|++|.++|||||++|.+|||
T Consensus 458 f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l-------~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlD 530 (629)
T KOG0336|consen 458 FVANMSSNDKVIIFVSRKVMADHLSSDFCL-------KGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLD 530 (629)
T ss_pred HHHhcCCCceEEEEEechhhhhhccchhhh-------cccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCC
Confidence 2 2235567999999999988888777664 4666777999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC-CCcEEEEecChhhHh
Q 001615 627 IDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIHD 688 (1044)
Q Consensus 627 Ip~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~~~ 688 (1044)
+|||++|+||++|.+.+ +|+||+||+||+ +.|..+.|++..++.
T Consensus 531 v~DiTHV~NyDFP~nIe------------------eYVHRvGrtGRaGr~G~sis~lt~~D~~ 575 (629)
T KOG0336|consen 531 VPDITHVYNYDFPRNIE------------------EYVHRVGRTGRAGRTGTSISFLTRNDWS 575 (629)
T ss_pred chhcceeeccCCCccHH------------------HHHHHhcccccCCCCcceEEEEehhhHH
Confidence 99999999999999777 999999999999 889999999998764
No 20
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-43 Score=418.21 Aligned_cols=331 Identities=20% Similarity=0.282 Sum_probs=256.6
Q ss_pred HhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHH
Q 001615 264 KLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISA 343 (1044)
Q Consensus 264 ~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la 343 (1044)
.+..++.+.+.+......-++++|.++|+.++.|+|+++.|+||||||.+|.+|+++.+..........+||++||||||
T Consensus 33 ~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA 112 (513)
T COG0513 33 SLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELA 112 (513)
T ss_pred hcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHH
Confidence 33444555555555666677889999999999999999999999999999999999996531111111189999999999
Q ss_pred HHHHHHHHHHhCCCCCcEEEEEE---ec---cccCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccchhHH
Q 001615 344 ISVAARVSSERGENLGETVGYQI---RL---ESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDF 416 (1044)
Q Consensus 344 ~qva~rv~~~~~~~~g~~vgy~i---r~---~~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~~d~ 416 (1044)
.|+++.+.+......+..+..-+ .. ......+.+|+|+|||+|++++..+. .++++.++|+|||| |+++++|
T Consensus 113 ~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD-rmLd~Gf 191 (513)
T COG0513 113 VQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD-RMLDMGF 191 (513)
T ss_pred HHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh-hhhcCCC
Confidence 99998887654432122222111 11 12223369999999999999999886 89999999999999 8999999
Q ss_pred HHHHHHHHcccCCcccEEEcccCCChHH---HHhhhCCCCeecCCCCc-----cccceeehHHHHHhhhcccCccccccc
Q 001615 417 LLIILRDLLPRRPDLRLILMSATINADL---FSKYFGNAPTVHIPGLT-----FPVTDLFLEDVLEKTRYKMNSKLDSFQ 488 (1044)
Q Consensus 417 ll~~lk~~~~~~~~~qiilmSATl~~~~---~~~~f~~~~~i~v~g~~-----~pv~~~~l~~~~~~~~~~~~~~~~~~~ 488 (1044)
...+.+.+....++.|+++||||++... ...|+.++..+.+.... -.+..+|+.
T Consensus 192 ~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~------------------ 253 (513)
T COG0513 192 IDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLE------------------ 253 (513)
T ss_pred HHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEE------------------
Confidence 9999888877777999999999998853 33555544444433110 001111110
Q ss_pred cccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhc-hHHHHHHHHHHHhccCCCCEEEEeCCHHHH
Q 001615 489 GNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQID-LGLVESTIEYICRHEGDGAILVFLTGWNDI 567 (1044)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~li~~~l~~i~~~~~~g~iLVFl~~~~~i 567 (1044)
++ .+....++..++.....+.+||||+++..+
T Consensus 254 -----------------------------------------------v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~ 286 (513)
T COG0513 254 -----------------------------------------------VESEEEKLELLLKLLKDEDEGRVIVFVRTKRLV 286 (513)
T ss_pred -----------------------------------------------eCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHH
Confidence 00 001445667777666677899999999999
Q ss_pred HHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceecccc
Q 001615 568 SKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDAL 647 (1044)
Q Consensus 568 ~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~ 647 (1044)
+.++..|.. .++.+..+||+|++++|.++++.|++|..+||||||+|+||||||+|.+||||++|.+..
T Consensus 287 ~~l~~~l~~-------~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e---- 355 (513)
T COG0513 287 EELAESLRK-------RGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPE---- 355 (513)
T ss_pred HHHHHHHHH-------CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHH----
Confidence 999999987 568899999999999999999999999999999999999999999999999999998555
Q ss_pred ccccccccccccHhhHHHhcccCCCC-CCcEEEEecChh
Q 001615 648 NKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRI 685 (1044)
Q Consensus 648 ~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~ 685 (1044)
.|+||+|||||. +.|.++.|+++.
T Consensus 356 --------------~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 356 --------------DYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred --------------HheeccCccccCCCCCeEEEEeCcH
Confidence 999999999999 889999999864
No 21
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.7e-44 Score=386.24 Aligned_cols=346 Identities=19% Similarity=0.245 Sum_probs=264.3
Q ss_pred HHHHHHHHHHHhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCC-CCcE
Q 001615 254 LNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRG-ADCN 332 (1044)
Q Consensus 254 ~~~~l~~~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~-~~~~ 332 (1044)
....+..+|+..+.|.++.+.+..-+.--++|+|...||..+-|+|++.||.||||||.+|.+|+|+.++-+..+ ...+
T Consensus 175 ~~~~~~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TR 254 (691)
T KOG0338|consen 175 ADTQMNESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATR 254 (691)
T ss_pred hhhHHhhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCccee
Confidence 344556688888889888888888888888999999999999999999999999999999999999999876544 3458
Q ss_pred EEEEcccHHHHHHHHHH---HHHHhCCCCCcEEEE-EEec-cccCCCCccEEEEchHHHHHHHhcCC--CCCccceEEec
Q 001615 333 IICTQPRRISAISVAAR---VSSERGENLGETVGY-QIRL-ESKRSAQTRLLFCTTGVLLRQLVEDP--DLSCVSHLLVD 405 (1044)
Q Consensus 333 ilv~~P~r~la~qva~r---v~~~~~~~~g~~vgy-~ir~-~~~~~~~~~I~v~T~g~Ll~~l~~~~--~L~~~~~lIiD 405 (1044)
|||++|||+||+|+++. ++++....+|..||- .++. +.......+|+|+|||+|.++|.+.+ .|+++.++|+|
T Consensus 255 VLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlD 334 (691)
T KOG0338|consen 255 VLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLD 334 (691)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEec
Confidence 99999999999999754 445555555555542 2222 22345678999999999999999988 79999999999
Q ss_pred hhhhccchhHHHHHHHHHHcccCCcccEEEcccCCChHH--HHhhhCCCCe-ecCCCCc-cc--cceeehHHHHHhhhcc
Q 001615 406 EIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINADL--FSKYFGNAPT-VHIPGLT-FP--VTDLFLEDVLEKTRYK 479 (1044)
Q Consensus 406 EaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSATl~~~~--~~~~f~~~~~-i~v~g~~-~p--v~~~~l~~~~~~~~~~ 479 (1044)
||| |+++..|.-.+-..+.....++|+++||||+..+. +.+.--+.|+ +.|.... .+ +...|+. ..
T Consensus 335 EAD-RMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiR-------IR 406 (691)
T KOG0338|consen 335 EAD-RMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIR-------IR 406 (691)
T ss_pred hHH-HHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHhe-------ec
Confidence 999 99999998887665555566899999999997663 4433223222 2221110 00 0000100 00
Q ss_pred cCccccccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEE
Q 001615 480 MNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILV 559 (1044)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLV 559 (1044)
. +.+ .+-..++..++...-...++|
T Consensus 407 ~-------------------~re------------------------------------~dRea~l~~l~~rtf~~~~iv 431 (691)
T KOG0338|consen 407 P-------------------KRE------------------------------------GDREAMLASLITRTFQDRTIV 431 (691)
T ss_pred c-------------------ccc------------------------------------cccHHHHHHHHHHhcccceEE
Confidence 0 000 001122333333333568999
Q ss_pred EeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCC
Q 001615 560 FLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKA 639 (1044)
Q Consensus 560 Fl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~ 639 (1044)
|+.+++.++++.-.|-- .++.+.-+||+|++++|.+.++.|+.+.+.||||||+|+|||||++|..||||.+|
T Consensus 432 Fv~tKk~AHRl~IllGL-------lgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP 504 (691)
T KOG0338|consen 432 FVRTKKQAHRLRILLGL-------LGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMP 504 (691)
T ss_pred EEehHHHHHHHHHHHHH-------hhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCc
Confidence 99999999998776653 56778889999999999999999999999999999999999999999999999999
Q ss_pred cceeccccccccccccccccHhhHHHhcccCCCC-CCcEEEEecChhhH
Q 001615 640 KETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIH 687 (1044)
Q Consensus 640 k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~~ 687 (1044)
+... .|+||.||+.|+ +.|.++.|..+.+-
T Consensus 505 ~t~e------------------~Y~HRVGRTARAGRaGrsVtlvgE~dR 535 (691)
T KOG0338|consen 505 KTIE------------------HYLHRVGRTARAGRAGRSVTLVGESDR 535 (691)
T ss_pred hhHH------------------HHHHHhhhhhhcccCcceEEEeccccH
Confidence 9554 999999999999 88999999987643
No 22
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.4e-41 Score=419.87 Aligned_cols=449 Identities=20% Similarity=0.188 Sum_probs=303.4
Q ss_pred HhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHH
Q 001615 264 KLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISA 343 (1044)
Q Consensus 264 ~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la 343 (1044)
+++..+.+.+.++.+. ..++++|.++++.+.++++++++||||||||+++.+++++.... +.++|+++|+|+||
T Consensus 5 ~~~l~~~~~~~~~~~~-~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~-----~~k~v~i~P~raLa 78 (674)
T PRK01172 5 DLGYDDEFLNLFTGND-FELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA-----GLKSIYIVPLRSLA 78 (674)
T ss_pred hcCCCHHHHHHHhhCC-CCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh-----CCcEEEEechHHHH
Confidence 3444555555555443 45799999999999999999999999999999999999987653 34788899999999
Q ss_pred HHHHHHHHHHhCCCCCcEEEEEEeccc---cCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccc--hhHHH
Q 001615 344 ISVAARVSSERGENLGETVGYQIRLES---KRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGM--NEDFL 417 (1044)
Q Consensus 344 ~qva~rv~~~~~~~~g~~vgy~ir~~~---~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~--~~d~l 417 (1044)
.|+++++.+.. ..|..|+..+.... .....++|+|+||+++..++.+++ .+.++++|||||||+.+- ....+
T Consensus 79 ~q~~~~~~~l~--~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~l 156 (674)
T PRK01172 79 MEKYEELSRLR--SLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTL 156 (674)
T ss_pred HHHHHHHHHHh--hcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHH
Confidence 99999987642 34555655442211 112367999999999998887776 689999999999996421 11233
Q ss_pred HHHHHHHcccCCcccEEEcccCC-ChHHHHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccccccccccccc
Q 001615 418 LIILRDLLPRRPDLRLILMSATI-NADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRR 496 (1044)
Q Consensus 418 l~~lk~~~~~~~~~qiilmSATl-~~~~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (1044)
..++..+...+++.|+|+||||+ +.+.+++|++ ++.+....++.|+........ .. +....
T Consensus 157 e~ll~~~~~~~~~~riI~lSATl~n~~~la~wl~-~~~~~~~~r~vpl~~~i~~~~----~~--------~~~~~----- 218 (674)
T PRK01172 157 ETVLSSARYVNPDARILALSATVSNANELAQWLN-ASLIKSNFRPVPLKLGILYRK----RL--------ILDGY----- 218 (674)
T ss_pred HHHHHHHHhcCcCCcEEEEeCccCCHHHHHHHhC-CCccCCCCCCCCeEEEEEecC----ee--------eeccc-----
Confidence 33444444456789999999999 6778999996 444555666666654321100 00 00000
Q ss_pred cccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHc
Q 001615 497 QDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKV 576 (1044)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~ 576 (1044)
... .. .+..++.... ..++++||||+++++++.++..|..
T Consensus 219 ---~~~--------------------------------~~---~~~~~i~~~~--~~~~~vLVF~~sr~~~~~~a~~L~~ 258 (674)
T PRK01172 219 ---ERS--------------------------------QV---DINSLIKETV--NDGGQVLVFVSSRKNAEDYAEMLIQ 258 (674)
T ss_pred ---ccc--------------------------------cc---cHHHHHHHHH--hCCCcEEEEeccHHHHHHHHHHHHH
Confidence 000 00 0122222222 3467999999999999999998875
Q ss_pred cccCC------------------CCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCC
Q 001615 577 NKFLG------------------DPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGK 638 (1044)
Q Consensus 577 ~~~~~------------------~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~ 638 (1044)
..... ......|..|||+|++++|+.+++.|++|.++|||||+++++|||+|+..+||+ +.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~-~~ 337 (674)
T PRK01172 259 HFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVR-DI 337 (674)
T ss_pred hhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEc-Cc
Confidence 31100 001235889999999999999999999999999999999999999999877765 43
Q ss_pred CcceeccccccccccccccccHhhHHHhcccCCCCC---CcEEEEecCh-hhHh---hcC-CCCCCccccCCh------H
Q 001615 639 AKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQ---PGVCYKLYPR-IIHD---AML-PYQLPEILRTPL------Q 704 (1044)
Q Consensus 639 ~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~---~G~c~~L~t~-~~~~---~l~-~~~~pei~r~~L------~ 704 (1044)
++ |+. ....++|.++|.||+|||||.+ .|.++.+... +.++ .+. ..+.| ..+.| .
T Consensus 338 ~~---~~~------~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~p--i~S~l~~~~~~~ 406 (674)
T PRK01172 338 TR---YGN------GGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEP--VISYMGSQRKVR 406 (674)
T ss_pred eE---eCC------CCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCc--eeecCCCcccHH
Confidence 33 332 2335689999999999999984 6777776542 2222 322 22222 11111 1
Q ss_pred HHHHHHHhcc----CCchhhhhhc-C--CCCCC---HHHHHHHHHHHHHcCCCCCCC--CcCccccccccccCChhhHHH
Q 001615 705 ELCLHIKSLQ----LGTVGSFLSK-A--LQPPD---PLAVQNAIELLKTIGALDDME--NLTPLGRHLCTLPVDPNIGKM 772 (1044)
Q Consensus 705 ~~~L~~k~l~----~~~~~~fl~~-~--~~pP~---~~~i~~al~~L~~lgal~~~~--~lT~lG~~l~~lpl~p~~~k~ 772 (1044)
.-+|...+.+ ..++.+|+.. | .++++ .+.++.|++.|.+.|+|+.++ .+|++|+.++.+|++|..+++
T Consensus 407 ~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~~t~~~ 486 (674)
T PRK01172 407 FNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRATRLGKLTSDLYIDPESALI 486 (674)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCCCHHHHHH
Confidence 1123333333 2445555422 1 23322 567999999999999998654 679999999999999999999
Q ss_pred HHHhhhcc-ChHHHHHHHh
Q 001615 773 LLMGAIFQ-CLNPALTIAA 790 (1044)
Q Consensus 773 ll~~~~~~-c~~~~l~iaa 790 (1044)
++.+..-. -...+|.+.|
T Consensus 487 ~~~~l~~~~~~~~~l~~~~ 505 (674)
T PRK01172 487 LKSAFDHDYDEDLALYYIS 505 (674)
T ss_pred HHHHhhccCCHHHHHHHhh
Confidence 88765432 2333444443
No 23
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.7e-42 Score=410.40 Aligned_cols=330 Identities=19% Similarity=0.211 Sum_probs=246.3
Q ss_pred hccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHH
Q 001615 265 LKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAI 344 (1044)
Q Consensus 265 ~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~ 344 (1044)
+..++.+.+.+...+.-.++++|.++++.++++++++++||||||||+++.+++++.+... ...+++|+++|||+||.
T Consensus 9 l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~--~~~~~~lil~PtreLa~ 86 (460)
T PRK11776 9 LPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK--RFRVQALVLCPTRELAD 86 (460)
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc--cCCceEEEEeCCHHHHH
Confidence 3344444444445555567889999999999999999999999999999999999987432 23457899999999999
Q ss_pred HHHHHHHHHhCCCCCcEEEEEE---ecc---ccCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccchhHHH
Q 001615 345 SVAARVSSERGENLGETVGYQI---RLE---SKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFL 417 (1044)
Q Consensus 345 qva~rv~~~~~~~~g~~vgy~i---r~~---~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~~d~l 417 (1044)
|+++.+........+..+..-. ... .....+++|+|+|||+|++++..+. .++++++||||||| ++++++|.
T Consensus 87 Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad-~~l~~g~~ 165 (460)
T PRK11776 87 QVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD-RMLDMGFQ 165 (460)
T ss_pred HHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH-HHhCcCcH
Confidence 9998887654322222222111 111 1123578999999999999998766 78999999999999 66787777
Q ss_pred HHHHHHHcccCCcccEEEcccCCChHH--HHhhh-CCCCeecCCCCc--cccceeehHHHHHhhhcccCccccccccccc
Q 001615 418 LIILRDLLPRRPDLRLILMSATINADL--FSKYF-GNAPTVHIPGLT--FPVTDLFLEDVLEKTRYKMNSKLDSFQGNSR 492 (1044)
Q Consensus 418 l~~lk~~~~~~~~~qiilmSATl~~~~--~~~~f-~~~~~i~v~g~~--~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 492 (1044)
..+...+....++.|+++||||++... +...| .++..+.+.... ..+..+|..
T Consensus 166 ~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~---------------------- 223 (460)
T PRK11776 166 DAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYE---------------------- 223 (460)
T ss_pred HHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEE----------------------
Confidence 666555555666889999999997653 44443 333333222111 001111100
Q ss_pred cccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHH
Q 001615 493 RSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLD 572 (1044)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~ 572 (1044)
. +.......+..++....++++||||+++++++.+++
T Consensus 224 ---------------------------~----------------~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~ 260 (460)
T PRK11776 224 ---------------------------V----------------SPDERLPALQRLLLHHQPESCVVFCNTKKECQEVAD 260 (460)
T ss_pred ---------------------------e----------------CcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHH
Confidence 0 000012233444445566789999999999999999
Q ss_pred HHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccc
Q 001615 573 QIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLAC 652 (1044)
Q Consensus 573 ~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~ 652 (1044)
.|.. .++.+..+||+|++.+|+.+++.|++|..+|||||+++++|||||+|++||++|+|.
T Consensus 261 ~L~~-------~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~------------ 321 (460)
T PRK11776 261 ALNA-------QGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELAR------------ 321 (460)
T ss_pred HHHh-------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCC------------
Confidence 9986 467899999999999999999999999999999999999999999999999999998
Q ss_pred cccccccHhhHHHhcccCCCC-CCcEEEEecChhhH
Q 001615 653 LLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIH 687 (1044)
Q Consensus 653 l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~~ 687 (1044)
+..+|+||+|||||. +.|.||.|++..+.
T Consensus 322 ------~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~ 351 (460)
T PRK11776 322 ------DPEVHVHRIGRTGRAGSKGLALSLVAPEEM 351 (460)
T ss_pred ------CHhHhhhhcccccCCCCcceEEEEEchhHH
Confidence 444999999999999 78999999998654
No 24
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.1e-42 Score=402.70 Aligned_cols=335 Identities=16% Similarity=0.142 Sum_probs=243.2
Q ss_pred HhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccC-----CCCcEEEEEcc
Q 001615 264 KLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLR-----GADCNIICTQP 338 (1044)
Q Consensus 264 ~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~-----~~~~~ilv~~P 338 (1044)
.+..++.+.+.+...+...++++|.++|+.+++++|++++||||||||+++.+++++.+..... ...+++||++|
T Consensus 12 ~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~P 91 (423)
T PRK04837 12 DFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAP 91 (423)
T ss_pred hCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECC
Confidence 3344444444555555556678999999999999999999999999999999999998865321 23578999999
Q ss_pred cHHHHHHHHHHHHHHhCCCCCcEEEEEEeccc------cCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhcc
Q 001615 339 RRISAISVAARVSSERGENLGETVGYQIRLES------KRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERG 411 (1044)
Q Consensus 339 ~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~------~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~ 411 (1044)
||+||.|+++.+.... ...+..++.-..... ....+++|+|+|||+|++++.... .++++++||||||| +.
T Consensus 92 treLa~Qi~~~~~~l~-~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad-~l 169 (423)
T PRK04837 92 TRELAVQIHADAEPLA-QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD-RM 169 (423)
T ss_pred cHHHHHHHHHHHHHHh-ccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH-HH
Confidence 9999999988765543 333444443322111 123467999999999999997765 78999999999999 55
Q ss_pred chhHHHHHHHHHHcccC--CcccEEEcccCCChHH---HHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccc
Q 001615 412 MNEDFLLIILRDLLPRR--PDLRLILMSATINADL---FSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDS 486 (1044)
Q Consensus 412 ~~~d~ll~~lk~~~~~~--~~~qiilmSATl~~~~---~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~ 486 (1044)
++.+|...+...+.... ...+.++||||++... ...++.++..+.+........ .
T Consensus 170 ~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~--------------------~ 229 (423)
T PRK04837 170 FDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGH--------------------R 229 (423)
T ss_pred hhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCC--------------------c
Confidence 77666655533322222 3456899999997654 224444433332211100000 0
Q ss_pred cccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHH
Q 001615 487 FQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWND 566 (1044)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~ 566 (1044)
+. . .+ .+. +.......+..+.......++||||+++..
T Consensus 230 i~-----------------~---------~~-~~~---------------~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~ 267 (423)
T PRK04837 230 IK-----------------E---------EL-FYP---------------SNEEKMRLLQTLIEEEWPDRAIIFANTKHR 267 (423)
T ss_pred ee-----------------E---------EE-EeC---------------CHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 00 0 00 000 000012233344444556789999999999
Q ss_pred HHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccc
Q 001615 567 ISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDA 646 (1044)
Q Consensus 567 i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~ 646 (1044)
++.+++.|.. .++.+..+||+|++++|..+++.|++|..+||||||++++|||||+|++||++++|.
T Consensus 268 ~~~l~~~L~~-------~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~------ 334 (423)
T PRK04837 268 CEEIWGHLAA-------DGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPD------ 334 (423)
T ss_pred HHHHHHHHHh-------CCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCC------
Confidence 9999999986 467899999999999999999999999999999999999999999999999999998
Q ss_pred cccccccccccccHhhHHHhcccCCCC-CCcEEEEecChhhH
Q 001615 647 LNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIH 687 (1044)
Q Consensus 647 ~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~~ 687 (1044)
|.++|+||+|||||. +.|.|+.|+++++.
T Consensus 335 ------------s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~ 364 (423)
T PRK04837 335 ------------DCEDYVHRIGRTGRAGASGHSISLACEEYA 364 (423)
T ss_pred ------------chhheEeccccccCCCCCeeEEEEeCHHHH
Confidence 444999999999999 78999999998743
No 25
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=9.5e-42 Score=402.21 Aligned_cols=336 Identities=19% Similarity=0.211 Sum_probs=249.2
Q ss_pred HHhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccC----CCCcEEEEEcc
Q 001615 263 EKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLR----GADCNIICTQP 338 (1044)
Q Consensus 263 ~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~----~~~~~ilv~~P 338 (1044)
+.+..++.+.+.+.....--++++|.++++.+++++++|++||||||||+++.+++++.+..... ...+++||++|
T Consensus 4 ~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~P 83 (456)
T PRK10590 4 DSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTP 83 (456)
T ss_pred HHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeC
Confidence 44455555666666666667788999999999999999999999999999999999998754321 12358999999
Q ss_pred cHHHHHHHHHHHHHHhCCCCCcEEEEE---Eecc---ccCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhcc
Q 001615 339 RRISAISVAARVSSERGENLGETVGYQ---IRLE---SKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERG 411 (1044)
Q Consensus 339 ~r~la~qva~rv~~~~~~~~g~~vgy~---ir~~---~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~ 411 (1044)
||+||.|+++.+.+.... .+..+..- ...+ .....+.+|+|+|||+|++++.... .++++++||||||| +.
T Consensus 84 treLa~Qi~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah-~l 161 (456)
T PRK10590 84 TRELAAQIGENVRDYSKY-LNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD-RM 161 (456)
T ss_pred cHHHHHHHHHHHHHHhcc-CCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH-HH
Confidence 999999999988775432 22221111 1111 1223468999999999999987766 78999999999999 66
Q ss_pred chhHHHHHHHHHHcccCCcccEEEcccCCChH--HH-HhhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccccc
Q 001615 412 MNEDFLLIILRDLLPRRPDLRLILMSATINAD--LF-SKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQ 488 (1044)
Q Consensus 412 ~~~d~ll~~lk~~~~~~~~~qiilmSATl~~~--~~-~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~ 488 (1044)
++.+|...+.+.+....++.|+++||||++.+ .+ ..++.++..+.+..+..... .+.
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~--------------------~i~ 221 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASE--------------------QVT 221 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccccccc--------------------cee
Confidence 77777666655554555678999999999765 23 34444433332221110000 000
Q ss_pred cccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHH
Q 001615 489 GNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDIS 568 (1044)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~ 568 (1044)
.. +. + ++.....+++.++.......++||||+++.+++
T Consensus 222 -----------------~~---------~~-~---------------~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~ 259 (456)
T PRK10590 222 -----------------QH---------VH-F---------------VDKKRKRELLSQMIGKGNWQQVLVFTRTKHGAN 259 (456)
T ss_pred -----------------EE---------EE-E---------------cCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHH
Confidence 00 00 0 000012234445555555678999999999999
Q ss_pred HHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccc
Q 001615 569 KLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALN 648 (1044)
Q Consensus 569 ~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~ 648 (1044)
.+++.|.. .++.+..+||+|++.+|.++++.|++|..+|||||+++++|||||+|++||++++|.
T Consensus 260 ~l~~~L~~-------~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~-------- 324 (456)
T PRK10590 260 HLAEQLNK-------DGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPN-------- 324 (456)
T ss_pred HHHHHHHH-------CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCC--------
Confidence 99999986 467789999999999999999999999999999999999999999999999999998
Q ss_pred cccccccccccHhhHHHhcccCCCC-CCcEEEEecChhhH
Q 001615 649 KLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIH 687 (1044)
Q Consensus 649 ~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~~ 687 (1044)
+..+|+||+|||||. ..|.|+.|++..+.
T Consensus 325 ----------~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~ 354 (456)
T PRK10590 325 ----------VPEDYVHRIGRTGRAAATGEALSLVCVDEH 354 (456)
T ss_pred ----------CHHHhhhhccccccCCCCeeEEEEecHHHH
Confidence 445999999999999 78999999987653
No 26
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.6e-41 Score=409.03 Aligned_cols=331 Identities=18% Similarity=0.201 Sum_probs=250.1
Q ss_pred HhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHH
Q 001615 264 KLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISA 343 (1044)
Q Consensus 264 ~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la 343 (1044)
.+..++.+.+.+.......++++|.++|+.+++++++|++||||||||+++.+++++.+... ...+++||++|||+||
T Consensus 10 ~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~--~~~~~~LIL~PTreLa 87 (629)
T PRK11634 10 DLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE--LKAPQILVLAPTRELA 87 (629)
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc--cCCCeEEEEeCcHHHH
Confidence 34444555555555666678899999999999999999999999999999999999886442 2346899999999999
Q ss_pred HHHHHHHHHHhCCCCCcEEEEEEe---cc---ccCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccchhHH
Q 001615 344 ISVAARVSSERGENLGETVGYQIR---LE---SKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDF 416 (1044)
Q Consensus 344 ~qva~rv~~~~~~~~g~~vgy~ir---~~---~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~~d~ 416 (1044)
.|+++.+.+......+..+..... .+ .....+++|+|+|||+|++++..+. .++++++|||||||+ ++++.|
T Consensus 88 ~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~-ml~~gf 166 (629)
T PRK11634 88 VQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE-MLRMGF 166 (629)
T ss_pred HHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH-Hhhccc
Confidence 999999877654433333322211 11 1223468999999999999998876 799999999999995 477777
Q ss_pred HHHHHHHHcccCCcccEEEcccCCChHH---HHhhhCCCCeecCCCCccc---cceeehHHHHHhhhcccCccccccccc
Q 001615 417 LLIILRDLLPRRPDLRLILMSATINADL---FSKYFGNAPTVHIPGLTFP---VTDLFLEDVLEKTRYKMNSKLDSFQGN 490 (1044)
Q Consensus 417 ll~~lk~~~~~~~~~qiilmSATl~~~~---~~~~f~~~~~i~v~g~~~p---v~~~~l~~~~~~~~~~~~~~~~~~~~~ 490 (1044)
...+...+....+..|+++||||++... ...|+.++..+.+...... +...|..
T Consensus 167 ~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~-------------------- 226 (629)
T PRK11634 167 IEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWT-------------------- 226 (629)
T ss_pred HHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEE--------------------
Confidence 7666555555566789999999997653 4456555444433221110 0000000
Q ss_pred cccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHH
Q 001615 491 SRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKL 570 (1044)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l 570 (1044)
+. .......+..++.......+||||+++..++.+
T Consensus 227 -----------------------------v~----------------~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l 261 (629)
T PRK11634 227 -----------------------------VW----------------GMRKNEALVRFLEAEDFDAAIIFVRTKNATLEV 261 (629)
T ss_pred -----------------------------ec----------------hhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHH
Confidence 00 000112233333445567899999999999999
Q ss_pred HHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccc
Q 001615 571 LDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKL 650 (1044)
Q Consensus 571 ~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~ 650 (1044)
++.|.. .++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|||||+|++||++++|.
T Consensus 262 ~~~L~~-------~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~---------- 324 (629)
T PRK11634 262 AEALER-------NGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPM---------- 324 (629)
T ss_pred HHHHHh-------CCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCC----------
Confidence 999986 467899999999999999999999999999999999999999999999999999998
Q ss_pred cccccccccHhhHHHhcccCCCC-CCcEEEEecChhhH
Q 001615 651 ACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIH 687 (1044)
Q Consensus 651 ~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~~ 687 (1044)
+.++|+||+|||||. +.|.|+.|++..+.
T Consensus 325 --------~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 325 --------DSESYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred --------CHHHHHHHhccccCCCCcceEEEEechHHH
Confidence 445999999999999 67999999987543
No 27
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.5e-40 Score=411.16 Aligned_cols=455 Identities=18% Similarity=0.152 Sum_probs=305.6
Q ss_pred HhccChhHHHHHHHhcCCCchHHHHHHHHH-HHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHH
Q 001615 264 KLKSSDSGKAMLSFREKLPAFKMKAEFLKA-VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRIS 342 (1044)
Q Consensus 264 ~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~-i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~l 342 (1044)
++...+.+.+.++.++..-++++|.++++. +.++++++++||||||||+++.++++..+.. +.++|+++|+|+|
T Consensus 5 ~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~-----~~kal~i~P~raL 79 (737)
T PRK02362 5 ELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR-----GGKALYIVPLRAL 79 (737)
T ss_pred hcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc-----CCcEEEEeChHHH
Confidence 344455566666666666788999999998 7899999999999999999999999988742 4589999999999
Q ss_pred HHHHHHHHHHHhCCCCCcEEEEEEe---ccccCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccch---hH
Q 001615 343 AISVAARVSSERGENLGETVGYQIR---LESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMN---ED 415 (1044)
Q Consensus 343 a~qva~rv~~~~~~~~g~~vgy~ir---~~~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~---~d 415 (1044)
|.|+++++.+.. ..|..|+-... .........+|+||||+++..++.+.. .+.++++|||||+|.- .+ ..
T Consensus 80 a~q~~~~~~~~~--~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l-~d~~rg~ 156 (737)
T PRK02362 80 ASEKFEEFERFE--ELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLI-DSANRGP 156 (737)
T ss_pred HHHHHHHHHHhh--cCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcccc-CCCcchH
Confidence 999999997542 12444432211 111112357899999999988887655 7899999999999942 22 12
Q ss_pred HHHHHHHHHcccCCcccEEEcccCC-ChHHHHhhhCCCCeecCCCCccccceeeh-HHHHHhhhcccCcccccccccccc
Q 001615 416 FLLIILRDLLPRRPDLRLILMSATI-NADLFSKYFGNAPTVHIPGLTFPVTDLFL-EDVLEKTRYKMNSKLDSFQGNSRR 493 (1044)
Q Consensus 416 ~ll~~lk~~~~~~~~~qiilmSATl-~~~~~~~~f~~~~~i~v~g~~~pv~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~ 493 (1044)
.+..++..+....++.|+|+||||+ +.+.+++|++.. .+....++.|+..... .+. . .+....
T Consensus 157 ~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~-~~~~~~rpv~l~~~v~~~~~-----~-------~~~~~~-- 221 (737)
T PRK02362 157 TLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAE-LVDSEWRPIDLREGVFYGGA-----I-------HFDDSQ-- 221 (737)
T ss_pred HHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCC-cccCCCCCCCCeeeEecCCe-----e-------cccccc--
Confidence 2333344444456789999999999 567899998643 2333334444432211 000 0 000000
Q ss_pred ccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHH
Q 001615 494 SRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQ 573 (1044)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~ 573 (1044)
. .+.. ...+....++...+ ..++++||||+++++++.++..
T Consensus 222 --------~----~~~~-------------------------~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~ 262 (737)
T PRK02362 222 --------R----EVEV-------------------------PSKDDTLNLVLDTL--EEGGQCLVFVSSRRNAEGFAKR 262 (737)
T ss_pred --------c----cCCC-------------------------ccchHHHHHHHHHH--HcCCCeEEEEeCHHHHHHHHHH
Confidence 0 0000 00000112222222 2468999999999999999988
Q ss_pred HHcccc--C---------------------------CCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccc
Q 001615 574 IKVNKF--L---------------------------GDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESS 624 (1044)
Q Consensus 574 L~~~~~--~---------------------------~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~G 624 (1044)
|..... . .......|..|||+|++++|+.+++.|++|.++|||||+++++|
T Consensus 263 L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~G 342 (737)
T PRK02362 263 AASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAG 342 (737)
T ss_pred HHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhh
Confidence 864310 0 00012478999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCCC---CcEEEEecChhh-----HhhcCCCCCC
Q 001615 625 ITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQ---PGVCYKLYPRII-----HDAMLPYQLP 696 (1044)
Q Consensus 625 idIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~---~G~c~~L~t~~~-----~~~l~~~~~p 696 (1044)
||+|++++||+. ...||+..+ ..++|.++|+||+|||||.+ .|.|+.+..... |+.+... .|
T Consensus 343 vnlPa~~VVI~~----~~~yd~~~g-----~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~-~~ 412 (737)
T PRK02362 343 LNLPARRVIIRD----YRRYDGGAG-----MQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWA-DP 412 (737)
T ss_pred cCCCceEEEEec----ceeecCCCC-----ceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhC-CC
Confidence 999999999973 345665432 25789999999999999983 499999986531 2333211 22
Q ss_pred ccccC------ChHHHHHHHHhccC----Cchhhhhhc-CCCCC------CHHHHHHHHHHHHHcCCCCCCC---CcCcc
Q 001615 697 EILRT------PLQELCLHIKSLQL----GTVGSFLSK-ALQPP------DPLAVQNAIELLKTIGALDDME---NLTPL 756 (1044)
Q Consensus 697 ei~r~------~L~~~~L~~k~l~~----~~~~~fl~~-~~~pP------~~~~i~~al~~L~~lgal~~~~---~lT~l 756 (1044)
|-..+ .|...++...+.+. .++.+|+.. |+..+ -.+.++.+++.|.+.|+|+.++ .+|++
T Consensus 413 ~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t~l 492 (737)
T PRK02362 413 EDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTDDTGRLERVVDDVLDFLERNGMIEEDGETLEATEL 492 (737)
T ss_pred CceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhccchHHHHHHHHHHHHHHHHCCCeeecCCeEeEChH
Confidence 22222 34455555544442 234444432 22222 2345899999999999998765 48999
Q ss_pred ccccccccCChhhHHHHHHhhhcc---ChHHHHHHHh
Q 001615 757 GRHLCTLPVDPNIGKMLLMGAIFQ---CLNPALTIAA 790 (1044)
Q Consensus 757 G~~l~~lpl~p~~~k~ll~~~~~~---c~~~~l~iaa 790 (1044)
|+.++.++++|..++.+..+..-. -...+|.+.|
T Consensus 493 G~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~ 529 (737)
T PRK02362 493 GHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVC 529 (737)
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhh
Confidence 999999999999999998775432 2233555554
No 28
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.4e-41 Score=405.34 Aligned_cols=350 Identities=17% Similarity=0.175 Sum_probs=249.0
Q ss_pred cccccccCCCCCCCchHHHhHHHHHHHHHHHhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhch
Q 001615 234 LSVKVANTISPPQSDSAKERLNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQ 313 (1044)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~ 313 (1044)
.|.++|. ++.+|....+++.+.+.+.+. +..-++++|.++|+.+++|++++++||||||||++
T Consensus 112 ~g~~~p~----pi~~f~~~~l~~~l~~~L~~~-------------g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTla 174 (518)
T PLN00206 112 KGEAVPP----PILSFSSCGLPPKLLLNLETA-------------GYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTAS 174 (518)
T ss_pred cCCCCCc----hhcCHHhCCCCHHHHHHHHHc-------------CCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHH
Confidence 4555554 566666666666666555443 34456789999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc-----CCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEecc------ccCCCCccEEEEc
Q 001615 314 LPQFILEEELSSL-----RGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLE------SKRSAQTRLLFCT 382 (1044)
Q Consensus 314 ~p~~il~~~~~~~-----~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~------~~~~~~~~I~v~T 382 (1044)
|.++++.++.... ...++++||++|||+||.|+.+.+... ....+..+..-+..+ .....+.+|+|+|
T Consensus 175 yllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l-~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~T 253 (518)
T PLN00206 175 FLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVL-GKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGT 253 (518)
T ss_pred HHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHH-hCCCCceEEEEECCcchHHHHHHhcCCCCEEEEC
Confidence 9999998875321 224678999999999999998777654 333332221111111 1223468999999
Q ss_pred hHHHHHHHhcCC-CCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccCCChH--HHHhhhCCCCe-ecCC
Q 001615 383 TGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINAD--LFSKYFGNAPT-VHIP 458 (1044)
Q Consensus 383 ~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSATl~~~--~~~~~f~~~~~-i~v~ 458 (1044)
||+|++++.... .++++++||||||| +.++.+|...+.+.+ ...++.|+++||||++.+ .+...+...++ +.+.
T Consensus 254 PgrL~~~l~~~~~~l~~v~~lViDEad-~ml~~gf~~~i~~i~-~~l~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~ 331 (518)
T PLN00206 254 PGRLIDLLSKHDIELDNVSVLVLDEVD-CMLERGFRDQVMQIF-QALSQPQVLLFSATVSPEVEKFASSLAKDIILISIG 331 (518)
T ss_pred HHHHHHHHHcCCccchheeEEEeecHH-HHhhcchHHHHHHHH-HhCCCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 999999998765 79999999999999 667777766554433 334678999999999765 35555544332 2221
Q ss_pred CCccccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhch
Q 001615 459 GLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDL 538 (1044)
Q Consensus 459 g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (1044)
....+.. ...+...+.. ..+ ..
T Consensus 332 ~~~~~~~--------------------~v~q~~~~~~----~~~----------------------------------k~ 353 (518)
T PLN00206 332 NPNRPNK--------------------AVKQLAIWVE----TKQ----------------------------------KK 353 (518)
T ss_pred CCCCCCc--------------------ceeEEEEecc----chh----------------------------------HH
Confidence 1110000 0000000000 000 00
Q ss_pred HHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEee
Q 001615 539 GLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLAT 618 (1044)
Q Consensus 539 ~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaT 618 (1044)
..+.+++... ....+++|||++++..++.+++.|... .++.+..+||++++++|..+++.|+.|..+|||||
T Consensus 354 ~~l~~~l~~~--~~~~~~~iVFv~s~~~a~~l~~~L~~~------~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaT 425 (518)
T PLN00206 354 QKLFDILKSK--QHFKPPAVVFVSSRLGADLLANAITVV------TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVAT 425 (518)
T ss_pred HHHHHHHHhh--cccCCCEEEEcCCchhHHHHHHHHhhc------cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEe
Confidence 0011122111 122468999999999999999998742 46778999999999999999999999999999999
Q ss_pred cccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC-CCcEEEEecChhhH
Q 001615 619 NIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIH 687 (1044)
Q Consensus 619 niae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~~ 687 (1044)
+++++|||||+|++||++++|. |..+|+||+|||||. ..|.|+.|++.++.
T Consensus 426 dvl~rGiDip~v~~VI~~d~P~------------------s~~~yihRiGRaGR~g~~G~ai~f~~~~~~ 477 (518)
T PLN00206 426 GVLGRGVDLLRVRQVIIFDMPN------------------TIKEYIHQIGRASRMGEKGTAIVFVNEEDR 477 (518)
T ss_pred cHhhccCCcccCCEEEEeCCCC------------------CHHHHHHhccccccCCCCeEEEEEEchhHH
Confidence 9999999999999999999998 555999999999999 68999999987654
No 29
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=7.7e-42 Score=373.72 Aligned_cols=344 Identities=17% Similarity=0.225 Sum_probs=271.1
Q ss_pred HHHHhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhcc--CCCCcEEEEEcc
Q 001615 261 RQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSL--RGADCNIICTQP 338 (1044)
Q Consensus 261 ~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~--~~~~~~ilv~~P 338 (1044)
.|..++.+....+-|+.-...-++.+|.+.|+..+.|++|+..|.||||||++|..|+|++++... ...+.-+||+.|
T Consensus 70 kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISP 149 (758)
T KOG0343|consen 70 KFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISP 149 (758)
T ss_pred hHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecc
Confidence 567778888888888888889999999999999999999999999999999999999999998653 233556888999
Q ss_pred cHHHHHHHHHHHHHH---hCCCCCcEEEEE-EeccccCCCCccEEEEchHHHHHHHhcCC--CCCccceEEechhhhccc
Q 001615 339 RRISAISVAARVSSE---RGENLGETVGYQ-IRLESKRSAQTRLLFCTTGVLLRQLVEDP--DLSCVSHLLVDEIHERGM 412 (1044)
Q Consensus 339 ~r~la~qva~rv~~~---~~~~~g~~vgy~-ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~--~L~~~~~lIiDEaHeR~~ 412 (1044)
||+||.|+++.+.+. .....|..+|-. +.++...-.+.+|+|||||+||++|...+ ..+++.++|+|||| |++
T Consensus 150 TRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD-R~L 228 (758)
T KOG0343|consen 150 TRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD-RML 228 (758)
T ss_pred hHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH-HHH
Confidence 999999999766543 344556666533 45555555678999999999999999988 56789999999999 999
Q ss_pred hhHHHHHHHHHHcccCCcccEEEcccCCChH--HHHhhhCCCC-eecCCCCccccceeehHHHHHhhhcccCcccccccc
Q 001615 413 NEDFLLIILRDLLPRRPDLRLILMSATINAD--LFSKYFGNAP-TVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQG 489 (1044)
Q Consensus 413 ~~d~ll~~lk~~~~~~~~~qiilmSATl~~~--~~~~~f~~~~-~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~ 489 (1044)
+|+|--.+-.++....+..|+++||||-... .+++.--..| .+.+.... .. .
T Consensus 229 DMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a----~~--------------a------- 283 (758)
T KOG0343|consen 229 DMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENA----VA--------------A------- 283 (758)
T ss_pred HHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccc----cc--------------c-------
Confidence 9999988877777788899999999997443 4555533333 22221000 00 0
Q ss_pred ccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHH
Q 001615 490 NSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISK 569 (1044)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~ 569 (1044)
..+.+.+.|- .+.......++...+.+....++|||+.+.+++..
T Consensus 284 ----------tP~~L~Q~y~-------------------------~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf 328 (758)
T KOG0343|consen 284 ----------TPSNLQQSYV-------------------------IVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKF 328 (758)
T ss_pred ----------ChhhhhheEE-------------------------EEehhhHHHHHHHHHHhccccceEEEEehhhHHHH
Confidence 0000111100 01111133445555556777899999999999999
Q ss_pred HHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceecccccc
Q 001615 570 LLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNK 649 (1044)
Q Consensus 570 l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~ 649 (1044)
+++.++... ++..++.|||.|++..|.+++..|-..+.-||+||+|++||+|+|.|++||.+++|-+..
T Consensus 329 ~~e~F~rlr-----pg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~------ 397 (758)
T KOG0343|consen 329 LYEAFCRLR-----PGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVD------ 397 (758)
T ss_pred HHHHHHhcC-----CCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHH------
Confidence 999998642 688899999999999999999999988889999999999999999999999999999666
Q ss_pred ccccccccccHhhHHHhcccCCCC-CCcEEEEecChhhHh
Q 001615 650 LACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIHD 688 (1044)
Q Consensus 650 ~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~~~ 688 (1044)
+|+||+||+.|. ..|.|+.+.++...+
T Consensus 398 ------------tYIHRvGRtAR~~~~G~sll~L~psEeE 425 (758)
T KOG0343|consen 398 ------------TYIHRVGRTARYKERGESLLMLTPSEEE 425 (758)
T ss_pred ------------HHHHHhhhhhcccCCCceEEEEcchhHH
Confidence 999999999999 789999999887644
No 30
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.9e-41 Score=401.62 Aligned_cols=333 Identities=17% Similarity=0.191 Sum_probs=241.7
Q ss_pred hccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhcc-----CCCCcEEEEEccc
Q 001615 265 LKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSL-----RGADCNIICTQPR 339 (1044)
Q Consensus 265 ~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~-----~~~~~~ilv~~P~ 339 (1044)
+..++.+.+.++.....-++++|.++|+.+++++|++++||||||||++|.+++++.+.... ....+++||++||
T Consensus 14 l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PT 93 (572)
T PRK04537 14 FDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPT 93 (572)
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCc
Confidence 33444444445555556678899999999999999999999999999999999999876432 1224789999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEEecc------ccCCCCccEEEEchHHHHHHHhcCC--CCCccceEEechhhhcc
Q 001615 340 RISAISVAARVSSERGENLGETVGYQIRLE------SKRSAQTRLLFCTTGVLLRQLVEDP--DLSCVSHLLVDEIHERG 411 (1044)
Q Consensus 340 r~la~qva~rv~~~~~~~~g~~vgy~ir~~------~~~~~~~~I~v~T~g~Ll~~l~~~~--~L~~~~~lIiDEaHeR~ 411 (1044)
|+||.|+++.+.+. +...+..++...... .....+.+|+|+|||+|++++.... .+.++++||||||| +.
T Consensus 94 reLa~Qi~~~~~~l-~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh-~l 171 (572)
T PRK04537 94 RELAIQIHKDAVKF-GADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD-RM 171 (572)
T ss_pred HHHHHHHHHHHHHH-hccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHH-HH
Confidence 99999999887654 444455444332211 1123467899999999999997654 68899999999999 55
Q ss_pred chhHHHHHHHHHHc--ccCCcccEEEcccCCChHH---HHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccc
Q 001615 412 MNEDFLLIILRDLL--PRRPDLRLILMSATINADL---FSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDS 486 (1044)
Q Consensus 412 ~~~d~ll~~lk~~~--~~~~~~qiilmSATl~~~~---~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~ 486 (1044)
++.+|...+...+. ..+.+.|+++||||++... ...++.++..+.+.........
T Consensus 172 ld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~-------------------- 231 (572)
T PRK04537 172 FDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAAR-------------------- 231 (572)
T ss_pred hhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccc--------------------
Confidence 66666655433322 2223689999999998754 2344433322222111100000
Q ss_pred cccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHH
Q 001615 487 FQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWND 566 (1044)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~ 566 (1044)
+.+ .+. + . .+ ......+..++......++||||+++..
T Consensus 232 i~q-----------------~~~----------~-~-------------~~-~~k~~~L~~ll~~~~~~k~LVF~nt~~~ 269 (572)
T PRK04537 232 VRQ-----------------RIY----------F-P-------------AD-EEKQTLLLGLLSRSEGARTMVFVNTKAF 269 (572)
T ss_pred eeE-----------------EEE----------e-c-------------CH-HHHHHHHHHHHhcccCCcEEEEeCCHHH
Confidence 000 000 0 0 00 0011223334444556789999999999
Q ss_pred HHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccc
Q 001615 567 ISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDA 646 (1044)
Q Consensus 567 i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~ 646 (1044)
++.+++.|.. .++.+..+||+|++.+|.++++.|++|..+|||||+++++|||||+|++||++++|.
T Consensus 270 ae~l~~~L~~-------~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~------ 336 (572)
T PRK04537 270 VERVARTLER-------HGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPF------ 336 (572)
T ss_pred HHHHHHHHHH-------cCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCC------
Confidence 9999999986 467899999999999999999999999999999999999999999999999999998
Q ss_pred cccccccccccccHhhHHHhcccCCCC-CCcEEEEecChhh
Q 001615 647 LNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (1044)
Q Consensus 647 ~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~ 686 (1044)
|..+|+||+|||||. ..|.|+.|++..+
T Consensus 337 ------------s~~~yvqRiGRaGR~G~~G~ai~~~~~~~ 365 (572)
T PRK04537 337 ------------DAEDYVHRIGRTARLGEEGDAISFACERY 365 (572)
T ss_pred ------------CHHHHhhhhcccccCCCCceEEEEecHHH
Confidence 555999999999999 7899999998754
No 31
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=5.7e-41 Score=394.94 Aligned_cols=339 Identities=21% Similarity=0.226 Sum_probs=253.9
Q ss_pred HHHhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhcc--CCCCcEEEEEccc
Q 001615 262 QEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSL--RGADCNIICTQPR 339 (1044)
Q Consensus 262 ~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~--~~~~~~ilv~~P~ 339 (1044)
|+++...+.+.+.++..+...++++|.++++.+.++++++++||||||||+++.+++++.+.... ....+++||++||
T Consensus 3 f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt 82 (434)
T PRK11192 3 FSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPT 82 (434)
T ss_pred HhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCc
Confidence 44556666777777777777889999999999999999999999999999999999998876422 2234689999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEEe------ccccCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccc
Q 001615 340 RISAISVAARVSSERGENLGETVGYQIR------LESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGM 412 (1044)
Q Consensus 340 r~la~qva~rv~~~~~~~~g~~vgy~ir------~~~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~ 412 (1044)
++||.|+++.+..... ..+..++.-.. .......+.+|+|+|||+|++++.... .+.++++||||||| +.+
T Consensus 83 ~eLa~Q~~~~~~~l~~-~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah-~~l 160 (434)
T PRK11192 83 RELAMQVADQARELAK-HTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD-RML 160 (434)
T ss_pred HHHHHHHHHHHHHHHc-cCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH-HHh
Confidence 9999999988765432 33333332211 111223467899999999999998776 68999999999999 777
Q ss_pred hhHHHHHHHHHHcccCCcccEEEcccCCChHH---HHhhhCCCCe-ecCCCCccccceeehHHHHHhhhcccCccccccc
Q 001615 413 NEDFLLIILRDLLPRRPDLRLILMSATINADL---FSKYFGNAPT-VHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQ 488 (1044)
Q Consensus 413 ~~d~ll~~lk~~~~~~~~~qiilmSATl~~~~---~~~~f~~~~~-i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~ 488 (1044)
+..|...+.......+...|+++||||++.+. +..++...++ +.+....... .
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------~--- 217 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRER--------------------K--- 217 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccc--------------------c---
Confidence 77776665554444556679999999997653 4444433222 1111000000 0
Q ss_pred cccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHH
Q 001615 489 GNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDIS 568 (1044)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~ 568 (1044)
.+...+.. .-+.....+++..+......+++||||+++++++
T Consensus 218 --------------~i~~~~~~------------------------~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~ 259 (434)
T PRK11192 218 --------------KIHQWYYR------------------------ADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVH 259 (434)
T ss_pred --------------CceEEEEE------------------------eCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHH
Confidence 00000000 0001113445566665556789999999999999
Q ss_pred HHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccc
Q 001615 569 KLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALN 648 (1044)
Q Consensus 569 ~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~ 648 (1044)
.+++.|.. .++.+..+||+|++.+|..+++.|++|..+|||||+++++|||||+|++||++++|.
T Consensus 260 ~l~~~L~~-------~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~-------- 324 (434)
T PRK11192 260 ELAGWLRK-------AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPR-------- 324 (434)
T ss_pred HHHHHHHh-------CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCC--------
Confidence 99999986 467799999999999999999999999999999999999999999999999999998
Q ss_pred cccccccccccHhhHHHhcccCCCC-CCcEEEEecChhhHh
Q 001615 649 KLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIHD 688 (1044)
Q Consensus 649 ~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~~~ 688 (1044)
|...|+||+|||||. ..|.|+.|++.+++.
T Consensus 325 ----------s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~ 355 (434)
T PRK11192 325 ----------SADTYLHRIGRTGRAGRKGTAISLVEAHDHL 355 (434)
T ss_pred ----------CHHHHhhcccccccCCCCceEEEEecHHHHH
Confidence 555999999999999 789999999877654
No 32
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-41 Score=367.15 Aligned_cols=345 Identities=18% Similarity=0.148 Sum_probs=257.2
Q ss_pred hhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccC-CC--CcEEEEEcccHHHHHH
Q 001615 269 DSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLR-GA--DCNIICTQPRRISAIS 345 (1044)
Q Consensus 269 ~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~-~~--~~~ilv~~P~r~la~q 345 (1044)
+.+.+.+...+.--.+++|...|+.+++++||++.++||||||++|.+|+++.++.+.. .+ ..-.||+.||||||.|
T Consensus 15 ~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~Q 94 (567)
T KOG0345|consen 15 PWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQ 94 (567)
T ss_pred HHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHH
Confidence 44445555555556788999999999999999999999999999999999998864422 22 2368999999999999
Q ss_pred HHHHHHHHhCC----CCCcEEEEE-Eeccc--cCCCCccEEEEchHHHHHHHhcCC-C--CCccceEEechhhhccchhH
Q 001615 346 VAARVSSERGE----NLGETVGYQ-IRLES--KRSAQTRLLFCTTGVLLRQLVEDP-D--LSCVSHLLVDEIHERGMNED 415 (1044)
Q Consensus 346 va~rv~~~~~~----~~g~~vgy~-ir~~~--~~~~~~~I~v~T~g~Ll~~l~~~~-~--L~~~~~lIiDEaHeR~~~~d 415 (1044)
|.+.+..+... ..-..||-+ +..+- ...++++|+|+|||+|++++++.. . +.++++||+|||| |-++++
T Consensus 95 I~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEAD-rLldmg 173 (567)
T KOG0345|consen 95 IREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEAD-RLLDMG 173 (567)
T ss_pred HHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchH-hHhccc
Confidence 98766544322 122233432 22111 123578899999999999998844 4 4499999999999 889999
Q ss_pred HHHHHHHHHcccCCcccEEEcccCCChH--HH-HhhhCCCCeecCCCCc---cc--cceeehHHHHHhhhcccCcccccc
Q 001615 416 FLLIILRDLLPRRPDLRLILMSATINAD--LF-SKYFGNAPTVHIPGLT---FP--VTDLFLEDVLEKTRYKMNSKLDSF 487 (1044)
Q Consensus 416 ~ll~~lk~~~~~~~~~qiilmSATl~~~--~~-~~~f~~~~~i~v~g~~---~p--v~~~~l~~~~~~~~~~~~~~~~~~ 487 (1044)
|...+-.++...+..+++=+||||.+.+ .+ ...+.|+..+.|.... .| +..+|+.
T Consensus 174 Fe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v----------------- 236 (567)
T KOG0345|consen 174 FEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLV----------------- 236 (567)
T ss_pred HHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeE-----------------
Confidence 9999888777777789999999999654 23 3444454444443222 12 2222221
Q ss_pred ccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHH
Q 001615 488 QGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDI 567 (1044)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i 567 (1044)
+..+.....+.+++.+...+++|||.+|...+
T Consensus 237 ------------------------------------------------~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasV 268 (567)
T KOG0345|consen 237 ------------------------------------------------CEADEKLSQLVHLLNNNKDKKCIVFFPTCASV 268 (567)
T ss_pred ------------------------------------------------ecHHHHHHHHHHHHhccccccEEEEecCcchH
Confidence 00111223444555566778999999999999
Q ss_pred HHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceecccc
Q 001615 568 SKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDAL 647 (1044)
Q Consensus 568 ~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~ 647 (1044)
+.....+... .....++++||.|.+.+|..++..|+.....+++|||||+||||||+|++||++|.|++..
T Consensus 269 eYf~~~~~~~-----l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~---- 339 (567)
T KOG0345|consen 269 EYFGKLFSRL-----LKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPS---- 339 (567)
T ss_pred HHHHHHHHHH-----hCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChh----
Confidence 9999888753 2567899999999999999999999998889999999999999999999999999999766
Q ss_pred ccccccccccccHhhHHHhcccCCCC-CCcEEEEecChh--hHhh-cCCCCCCccccCC
Q 001615 648 NKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRI--IHDA-MLPYQLPEILRTP 702 (1044)
Q Consensus 648 ~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~--~~~~-l~~~~~pei~r~~ 702 (1044)
+++||+|||||. +.|.++.|..+. .|.. |.-...|++-+..
T Consensus 340 --------------~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~ 384 (567)
T KOG0345|consen 340 --------------SFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERID 384 (567)
T ss_pred --------------HHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhc
Confidence 999999999999 789888877653 4544 4444466655443
No 33
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.5e-41 Score=367.93 Aligned_cols=343 Identities=17% Similarity=0.144 Sum_probs=262.7
Q ss_pred HHHHHHhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccC--CCCcEEEEE
Q 001615 259 KERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLR--GADCNIICT 336 (1044)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~--~~~~~ilv~ 336 (1044)
...+.....++...+.++.....-++++|+..++.++.|+|+++.|.||||||++|+++.++..+.... ..+..++|+
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 345556677777788888888889999999999999999999999999999999999999999876432 234578889
Q ss_pred cccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccc------cCCCCccEEEEchHHHHHHHhcCC--CCCccceEEechhh
Q 001615 337 QPRRISAISVAARVSSERGENLGETVGYQIRLES------KRSAQTRLLFCTTGVLLRQLVEDP--DLSCVSHLLVDEIH 408 (1044)
Q Consensus 337 ~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~------~~~~~~~I~v~T~g~Ll~~l~~~~--~L~~~~~lIiDEaH 408 (1044)
.|||+||.|++..+.+.+...-+..||+-+.... +...+++|+|+|||+|+++|++.+ ...++.++|+||||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD 240 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD 240 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch
Confidence 9999999999988888776655666766654332 223489999999999999999876 56778899999999
Q ss_pred hccchhHHHHHHHHHHcccCCcccEEEcccCCChHH--HHhh-hCC-CCeecCCCCccccceeehHHHHHhhhcccCccc
Q 001615 409 ERGMNEDFLLIILRDLLPRRPDLRLILMSATINADL--FSKY-FGN-APTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKL 484 (1044)
Q Consensus 409 eR~~~~d~ll~~lk~~~~~~~~~qiilmSATl~~~~--~~~~-f~~-~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~ 484 (1044)
|-++++|...+.+++-......|.+++|||.+.+. ++.- +.. +..+.+....-+....
T Consensus 241 -rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The----------------- 302 (543)
T KOG0342|consen 241 -RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHE----------------- 302 (543)
T ss_pred -hhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhh-----------------
Confidence 88999999988887776777899999999998764 2211 111 1112221111110000
Q ss_pred cccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCH
Q 001615 485 DSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGW 564 (1044)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~ 564 (1044)
.+.+.+- +.. ..-. ...++..+.++....+|+|||+|.
T Consensus 303 ------------------~l~Qgyv---v~~------------------~~~~---f~ll~~~LKk~~~~~KiiVF~sT~ 340 (543)
T KOG0342|consen 303 ------------------RLEQGYV---VAP------------------SDSR---FSLLYTFLKKNIKRYKIIVFFSTC 340 (543)
T ss_pred ------------------cccceEE---ecc------------------ccch---HHHHHHHHHHhcCCceEEEEechh
Confidence 0000000 000 0000 111222333333348999999999
Q ss_pred HHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceec
Q 001615 565 NDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSY 644 (1044)
Q Consensus 565 ~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~y 644 (1044)
..+..+++.|.. ..+.|..+||.+++..|..++..|++.+.-|||||||++||+|+|+|++||++|.|.+..
T Consensus 341 ~~vk~~~~lL~~-------~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~- 412 (543)
T KOG0342|consen 341 MSVKFHAELLNY-------IDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPE- 412 (543)
T ss_pred hHHHHHHHHHhh-------cCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHH-
Confidence 999999999985 677899999999999999999999999999999999999999999999999999999666
Q ss_pred cccccccccccccccHhhHHHhcccCCCC-CCcEEEEecChhh
Q 001615 645 DALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (1044)
Q Consensus 645 d~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~ 686 (1044)
+|+||+|||||. ..|.++.|..+..
T Consensus 413 -----------------~YIHRvGRTaR~gk~G~alL~l~p~E 438 (543)
T KOG0342|consen 413 -----------------QYIHRVGRTAREGKEGKALLLLAPWE 438 (543)
T ss_pred -----------------HHHHHhccccccCCCceEEEEeChhH
Confidence 999999999999 7899999988754
No 34
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-41 Score=368.07 Aligned_cols=370 Identities=18% Similarity=0.229 Sum_probs=279.7
Q ss_pred CCCCCCCCcccccccCCccccccccCCCCCCCchHHHhHHHHHHHHHHHhccChhHHHHHHHhcCCCchHHHHHHHHHHH
Q 001615 216 VPVNDSGIESSEVARRPKLSVKVANTISPPQSDSAKERLNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVA 295 (1044)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~ 295 (1044)
+..+.+.++.......+++|...|. ++.+|+.-.....|...+.+..+. -.|++|.++++..+
T Consensus 196 gl~~~d~~~~r~~Lnlrv~g~s~~r----pvtsfeh~gfDkqLm~airk~Ey~-------------kptpiq~qalptal 258 (731)
T KOG0339|consen 196 GLTKMDVIDLRLTLNLRVSGSSPPR----PVTSFEHFGFDKQLMTAIRKSEYE-------------KPTPIQCQALPTAL 258 (731)
T ss_pred ccccccchhhHhhhcceeccCCCCC----CcchhhhcCchHHHHHHHhhhhcc-------------cCCccccccccccc
Confidence 3445555555556666777887776 566665555555555555443333 34569999999999
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHHHHhcc---CCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCc--EEEEEE----
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSL---RGADCNIICTQPRRISAISVAARVSSERGENLGE--TVGYQI---- 366 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~~~~~~---~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~--~vgy~i---- 366 (1044)
++++|+-+|.||||||.+|..+++.++..+. .|.++..|+++|||+||.||.....++ +...|. ..-|+-
T Consensus 259 sgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf-~K~ygl~~v~~ygGgsk~ 337 (731)
T KOG0339|consen 259 SGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKF-GKAYGLRVVAVYGGGSKW 337 (731)
T ss_pred ccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHh-hhhccceEEEeecCCcHH
Confidence 9999999999999999999999999887553 366788899999999999998766554 222222 222331
Q ss_pred eccccCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccCCChHH-
Q 001615 367 RLESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINADL- 444 (1044)
Q Consensus 367 r~~~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSATl~~~~- 444 (1044)
.+......++.|+|||||+|++++.-.. ++.++++|||||++ |+.+++|+.++..+....+|+.|+|+||||+...+
T Consensus 338 eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEad-rmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe 416 (731)
T KOG0339|consen 338 EQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEAD-RMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIE 416 (731)
T ss_pred HHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechh-hhhccccHHHHHHHHhhcCCcceEEEeeccchHHHH
Confidence 1112233689999999999999997766 89999999999999 99999999999888888999999999999997653
Q ss_pred -HHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhhhhcccccccccchhhh
Q 001615 445 -FSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRAS 523 (1044)
Q Consensus 445 -~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1044)
+++-|-..|+-.|.|. | ......+.+...-.
T Consensus 417 ~lard~L~dpVrvVqg~---v----------------gean~dITQ~V~V~----------------------------- 448 (731)
T KOG0339|consen 417 KLARDILSDPVRVVQGE---V----------------GEANEDITQTVSVC----------------------------- 448 (731)
T ss_pred HHHHHHhcCCeeEEEee---h----------------hccccchhheeeec-----------------------------
Confidence 4433333343332221 1 00111111100000
Q ss_pred hHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhh
Q 001615 524 TRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREI 603 (1044)
Q Consensus 524 ~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v 603 (1044)
..+...+.-+++++......|++|||+.-+.+++.++..|.. .++.|..+||+|.+.+|.++
T Consensus 449 -----------~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lkl-------k~~~v~llhgdkdqa~rn~~ 510 (731)
T KOG0339|consen 449 -----------PSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKL-------KGFNVSLLHGDKDQAERNEV 510 (731)
T ss_pred -----------cCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhcc-------ccceeeeecCchhhHHHHHH
Confidence 000112444666777667789999999999999999999986 67899999999999999999
Q ss_pred hCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC-CCcEEEEec
Q 001615 604 FDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLY 682 (1044)
Q Consensus 604 ~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~ 682 (1044)
+..|+.+...|+|||++|++|+||+++..||++++.+++. .+.||+||+||. ..|++|.|.
T Consensus 511 ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardId------------------ththrigrtgRag~kGvayTlv 572 (731)
T KOG0339|consen 511 LSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDID------------------THTHRIGRTGRAGEKGVAYTLV 572 (731)
T ss_pred HHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhH------------------HHHHHhhhcccccccceeeEEe
Confidence 9999999999999999999999999999999999999666 999999999999 679999999
Q ss_pred ChhhHh
Q 001615 683 PRIIHD 688 (1044)
Q Consensus 683 t~~~~~ 688 (1044)
|+.+-+
T Consensus 573 TeKDa~ 578 (731)
T KOG0339|consen 573 TEKDAE 578 (731)
T ss_pred chhhHH
Confidence 987654
No 35
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.5e-41 Score=349.60 Aligned_cols=339 Identities=21% Similarity=0.233 Sum_probs=249.5
Q ss_pred HHHhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHH
Q 001615 262 QEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRI 341 (1044)
Q Consensus 262 ~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~ 341 (1044)
|+.+..++=+.+-++.-+..-++++|..+|+.|++|+|+|-+|.||||||++|.+++++.+-... .+--.+|+.|||+
T Consensus 9 F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP--~giFalvlTPTrE 86 (442)
T KOG0340|consen 9 FSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP--YGIFALVLTPTRE 86 (442)
T ss_pred hhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC--CcceEEEecchHH
Confidence 44455555555666666666778899999999999999999999999999999999999985543 3446899999999
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEE------EeccccCCCCccEEEEchHHHHHHHhcCC-----CCCccceEEechhhhc
Q 001615 342 SAISVAARVSSERGENLGETVGYQ------IRLESKRSAQTRLLFCTTGVLLRQLVEDP-----DLSCVSHLLVDEIHER 410 (1044)
Q Consensus 342 la~qva~rv~~~~~~~~g~~vgy~------ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~-----~L~~~~~lIiDEaHeR 410 (1044)
||.|+++++.. +|...+..+..- +......+.+.+++++|||+|.+.+.++. .+.++.++|+|||| |
T Consensus 87 LA~QiaEQF~a-lGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD-r 164 (442)
T KOG0340|consen 87 LALQIAEQFIA-LGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD-R 164 (442)
T ss_pred HHHHHHHHHHH-hcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh-h
Confidence 99999999854 455444433222 34444566789999999999999999873 68999999999999 8
Q ss_pred cchhHHHHHHHHHHcccCCcccEEEcccCCChHHHHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccccccc
Q 001615 411 GMNEDFLLIILRDLLPRRPDLRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGN 490 (1044)
Q Consensus 411 ~~~~d~ll~~lk~~~~~~~~~qiilmSATl~~~~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~ 490 (1044)
.+..+|--.+--......+.+|.+++|||++... ...|+ +|+-.- ..| +++. +.-.+
T Consensus 165 vL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i-~ql~~-~~i~k~--~a~-----~~e~------~~~vs-------- 221 (442)
T KOG0340|consen 165 VLAGCFPDILEGIEECLPKPRQTLLFSATITDTI-KQLFG-CPITKS--IAF-----ELEV------IDGVS-------- 221 (442)
T ss_pred hhccchhhHHhhhhccCCCccceEEEEeehhhHH-HHhhc-CCcccc--cce-----EEec------cCCCC--------
Confidence 8888776554333334555679999999997554 22222 211100 000 0000 00000
Q ss_pred cccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHh---ccCCCCEEEEeCCHHHH
Q 001615 491 SRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICR---HEGDGAILVFLTGWNDI 567 (1044)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~---~~~~g~iLVFl~~~~~i 567 (1044)
..+.+. ..|...+ .+.+...+.++++ +++.+.++||+++..++
T Consensus 222 ---------tvetL~---------q~yI~~~----------------~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~c 267 (442)
T KOG0340|consen 222 ---------TVETLY---------QGYILVS----------------IDVKDAYLVHLLRDFENKENGSIMIFVNTTREC 267 (442)
T ss_pred ---------chhhhh---------hheeecc----------------hhhhHHHHHHHHhhhhhccCceEEEEeehhHHH
Confidence 000000 0010000 1112222333332 23678999999999999
Q ss_pred HHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceecccc
Q 001615 568 SKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDAL 647 (1044)
Q Consensus 568 ~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~ 647 (1044)
+.++..|.. ..+.+..+||.|++.+|..++.+|+++..+||||||||+||+|||.|..|||+++|++..
T Consensus 268 Q~l~~~l~~-------le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~---- 336 (442)
T KOG0340|consen 268 QLLSMTLKN-------LEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPK---- 336 (442)
T ss_pred HHHHHHHhh-------hceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHH----
Confidence 999999987 678899999999999999999999999999999999999999999999999999999666
Q ss_pred ccccccccccccHhhHHHhcccCCCC-CCcEEEEecChhh
Q 001615 648 NKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (1044)
Q Consensus 648 ~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~ 686 (1044)
.|+||.||+.|+ +.|.++.++++.+
T Consensus 337 --------------~yiHRvGRtARAGR~G~aiSivt~rD 362 (442)
T KOG0340|consen 337 --------------DYIHRVGRTARAGRKGMAISIVTQRD 362 (442)
T ss_pred --------------HHHHhhcchhcccCCcceEEEechhh
Confidence 999999999999 7899999999644
No 36
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.2e-40 Score=388.02 Aligned_cols=331 Identities=16% Similarity=0.196 Sum_probs=238.8
Q ss_pred cChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCC-----CCcEEEEEcccHH
Q 001615 267 SSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRG-----ADCNIICTQPRRI 341 (1044)
Q Consensus 267 ~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~-----~~~~ilv~~P~r~ 341 (1044)
.++.+.+.+...+..-++++|.++++.+++|+++|+++|||||||+++.+++++.+...... ..+++||++|||+
T Consensus 94 l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~Ptre 173 (475)
T PRK01297 94 LAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRE 173 (475)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHH
Confidence 34444455555555667889999999999999999999999999999999999988654211 1468999999999
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEEE---ecc----ccCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccch
Q 001615 342 SAISVAARVSSERGENLGETVGYQI---RLE----SKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMN 413 (1044)
Q Consensus 342 la~qva~rv~~~~~~~~g~~vgy~i---r~~----~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~ 413 (1044)
||.|+++.+..... ..+..+.--. ... ......++|+|+||++|++++.... .|+++++||||||| +.++
T Consensus 174 La~Q~~~~~~~l~~-~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah-~l~~ 251 (475)
T PRK01297 174 LVVQIAKDAAALTK-YTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEAD-RMLD 251 (475)
T ss_pred HHHHHHHHHHHhhc-cCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHH-HHHh
Confidence 99999988866532 2333332111 111 1123467999999999999887655 78999999999999 4455
Q ss_pred hHHHHHHHHHHcc--cCCcccEEEcccCCChHH--HH-hhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccccc
Q 001615 414 EDFLLIILRDLLP--RRPDLRLILMSATINADL--FS-KYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQ 488 (1044)
Q Consensus 414 ~d~ll~~lk~~~~--~~~~~qiilmSATl~~~~--~~-~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~ 488 (1044)
.+|...+.+.+.. ...+.|+|++|||++.+. +. .|..++..+.+....... ....
T Consensus 252 ~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------~~~~ 311 (475)
T PRK01297 252 MGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVAS--------------------DTVE 311 (475)
T ss_pred cccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCC--------------------Cccc
Confidence 5665444333322 234679999999997653 33 444333222221110000 0000
Q ss_pred cccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHH
Q 001615 489 GNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDIS 568 (1044)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~ 568 (1044)
+ .+. .. .......++..++......++||||+++++++
T Consensus 312 ~-----------------~~~---------~~----------------~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~ 349 (475)
T PRK01297 312 Q-----------------HVY---------AV----------------AGSDKYKLLYNLVTQNPWERVMVFANRKDEVR 349 (475)
T ss_pred E-----------------EEE---------Ee----------------cchhHHHHHHHHHHhcCCCeEEEEeCCHHHHH
Confidence 0 000 00 00001223344444555678999999999999
Q ss_pred HHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccc
Q 001615 569 KLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALN 648 (1044)
Q Consensus 569 ~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~ 648 (1044)
.+++.|.. .++.+..+||++++++|.++++.|++|..+||||||++++|||||+|++||++|+|.
T Consensus 350 ~l~~~L~~-------~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~-------- 414 (475)
T PRK01297 350 RIEERLVK-------DGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPE-------- 414 (475)
T ss_pred HHHHHHHH-------cCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCC--------
Confidence 99999976 456788999999999999999999999999999999999999999999999999998
Q ss_pred cccccccccccHhhHHHhcccCCCC-CCcEEEEecChhh
Q 001615 649 KLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (1044)
Q Consensus 649 ~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~ 686 (1044)
|.++|+||+|||||. +.|.++.|+++++
T Consensus 415 ----------s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d 443 (475)
T PRK01297 415 ----------DPDDYVHRIGRTGRAGASGVSISFAGEDD 443 (475)
T ss_pred ----------CHHHHHHhhCccCCCCCCceEEEEecHHH
Confidence 666999999999999 7899999998764
No 37
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-41 Score=339.20 Aligned_cols=335 Identities=17% Similarity=0.254 Sum_probs=255.9
Q ss_pred CCCchHHHhHHHHHHHHHHHhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHh
Q 001615 245 PQSDSAKERLNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELS 324 (1044)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~ 324 (1044)
.+++|..+.+.+++...+-...+..+. .+|+.+++.|.+|++||++|..|+|||..+..-+++..--
T Consensus 25 v~~~F~~Mgl~edlLrgiY~yGfekPS-------------~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~ 91 (400)
T KOG0328|consen 25 VIPTFDDMGLKEDLLRGIYAYGFEKPS-------------AIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI 91 (400)
T ss_pred cccchhhcCchHHHHHHHHHhccCCch-------------HHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc
Confidence 466788899999888887776666554 4899999999999999999999999998877777765422
Q ss_pred ccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCC---------cEEEEEEeccccCCCCccEEEEchHHHHHHHhcCC-
Q 001615 325 SLRGADCNIICTQPRRISAISVAARVSSERGENLG---------ETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDP- 394 (1044)
Q Consensus 325 ~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g---------~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~- 394 (1044)
. .....++|+.|||+||.|+.+.+.. ++...+ ..+|-.++ +..-+.+++..|||++++++....
T Consensus 92 ~--~r~tQ~lilsPTRELa~Qi~~vi~a-lg~~mnvq~hacigg~n~gedik---kld~G~hvVsGtPGrv~dmikr~~L 165 (400)
T KOG0328|consen 92 S--VRETQALILSPTRELAVQIQKVILA-LGDYMNVQCHACIGGKNLGEDIK---KLDYGQHVVSGTPGRVLDMIKRRSL 165 (400)
T ss_pred c--cceeeEEEecChHHHHHHHHHHHHH-hcccccceEEEEecCCccchhhh---hhcccceEeeCCCchHHHHHHhccc
Confidence 1 2346899999999999999876654 444333 23332222 223478999999999999998877
Q ss_pred CCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccCCChHHHH--hhhCCCCe-ecCCCCccc---cceee
Q 001615 395 DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINADLFS--KYFGNAPT-VHIPGLTFP---VTDLF 468 (1044)
Q Consensus 395 ~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSATl~~~~~~--~~f~~~~~-i~v~g~~~p---v~~~~ 468 (1044)
.-..+.++|+|||||. ++-+|-.++.+......|+.|++++|||++.+.+. +.|...|+ +.+.-...+ ++.+|
T Consensus 166 ~tr~vkmlVLDEaDem-L~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~ 244 (400)
T KOG0328|consen 166 RTRAVKMLVLDEADEM-LNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFF 244 (400)
T ss_pred cccceeEEEeccHHHH-HHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhhe
Confidence 6788999999999964 77788888877777788899999999999998654 44443332 322211111 11122
Q ss_pred hHHHHHhhhcccCccccccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHH
Q 001615 469 LEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYI 548 (1044)
Q Consensus 469 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i 548 (1044)
.+- .+.+-+.+ .++.+
T Consensus 245 v~v-----------------------e~EewKfd-----------------------------------------tLcdL 260 (400)
T KOG0328|consen 245 VAV-----------------------EKEEWKFD-----------------------------------------TLCDL 260 (400)
T ss_pred eee-----------------------chhhhhHh-----------------------------------------HHHHH
Confidence 110 00001112 22222
Q ss_pred HhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCC
Q 001615 549 CRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITID 628 (1044)
Q Consensus 549 ~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp 628 (1044)
...-.-...+|||+|++.++.|.+.+++ ..+.|.++||+|+++||+++...|++|+.+||++|++-+||+|+|
T Consensus 261 Yd~LtItQavIFcnTk~kVdwLtekm~~-------~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~ 333 (400)
T KOG0328|consen 261 YDTLTITQAVIFCNTKRKVDWLTEKMRE-------ANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQ 333 (400)
T ss_pred hhhhehheEEEEecccchhhHHHHHHHh-------hCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcc
Confidence 2222234579999999999999999997 578899999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC-CCcEEEEecChhhHh
Q 001615 629 DVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIHD 688 (1044)
Q Consensus 629 ~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~~~ 688 (1044)
-|.+||||++|.+.. .|+||+||.||. +.|.++.|...++..
T Consensus 334 qVslviNYDLP~nre------------------~YIHRIGRSGRFGRkGvainFVk~~d~~ 376 (400)
T KOG0328|consen 334 QVSLVINYDLPNNRE------------------LYIHRIGRSGRFGRKGVAINFVKSDDLR 376 (400)
T ss_pred eeEEEEecCCCccHH------------------HHhhhhccccccCCcceEEEEecHHHHH
Confidence 999999999999554 999999999999 899999999887654
No 38
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.3e-38 Score=394.81 Aligned_cols=456 Identities=18% Similarity=0.119 Sum_probs=298.1
Q ss_pred HHhccChhHHHHHHHhcCCCchHHHHHHHHH-HHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHH
Q 001615 263 EKLKSSDSGKAMLSFREKLPAFKMKAEFLKA-VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRI 341 (1044)
Q Consensus 263 ~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~-i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~ 341 (1044)
+++..++.+.+.++.++.--++++|.++++. +.+++++++++|||||||+++.+++++.+... +.++|+++|+|+
T Consensus 4 ~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~----~~~~l~l~P~~a 79 (720)
T PRK00254 4 DELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE----GGKAVYLVPLKA 79 (720)
T ss_pred HHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc----CCeEEEEeChHH
Confidence 3455666777777777777889999999986 88999999999999999999999999887642 458999999999
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEEEec---cccCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccchhHHH
Q 001615 342 SAISVAARVSSERGENLGETVGYQIRL---ESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFL 417 (1044)
Q Consensus 342 la~qva~rv~~~~~~~~g~~vgy~ir~---~~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~~d~l 417 (1044)
||.|+++++.+. . ..|..|+..... .......++|+|+||+++..++.... .++++++|||||+|.- .+.+.-
T Consensus 80 La~q~~~~~~~~-~-~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l-~~~~rg 156 (720)
T PRK00254 80 LAEEKYREFKDW-E-KLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI-GSYDRG 156 (720)
T ss_pred HHHHHHHHHHHH-h-hcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc-CCccch
Confidence 999999988753 2 234445432211 11122457899999999998887654 7899999999999942 222211
Q ss_pred HHHHHHHcccCCcccEEEcccCC-ChHHHHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccccccccccccc
Q 001615 418 LIILRDLLPRRPDLRLILMSATI-NADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRR 496 (1044)
Q Consensus 418 l~~lk~~~~~~~~~qiilmSATl-~~~~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (1044)
..+-..+.....+.|+|+||||+ +.+.+++|++.. .+....++.|+....... .+. .+...
T Consensus 157 ~~le~il~~l~~~~qiI~lSATl~n~~~la~wl~~~-~~~~~~rpv~l~~~~~~~-----~~~------~~~~~------ 218 (720)
T PRK00254 157 ATLEMILTHMLGRAQILGLSATVGNAEELAEWLNAE-LVVSDWRPVKLRKGVFYQ-----GFL------FWEDG------ 218 (720)
T ss_pred HHHHHHHHhcCcCCcEEEEEccCCCHHHHHHHhCCc-cccCCCCCCcceeeEecC-----Cee------eccCc------
Confidence 11111122234568999999999 678899998643 333334444432211100 000 00000
Q ss_pred cccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHc
Q 001615 497 QDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKV 576 (1044)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~ 576 (1044)
.... +. ..+...+..... .++++||||++++.++.++..|..
T Consensus 219 ---~~~~----------------~~-----------------~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~ 260 (720)
T PRK00254 219 ---KIER----------------FP-----------------NSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAK 260 (720)
T ss_pred ---chhc----------------ch-----------------HHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHH
Confidence 0000 00 001122222222 357899999999999988877743
Q ss_pred cc--cCC------------------------CCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCe
Q 001615 577 NK--FLG------------------------DPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDV 630 (1044)
Q Consensus 577 ~~--~~~------------------------~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V 630 (1044)
.. +.. ......|.+|||+|++++|..+++.|++|.++|||||+++++|||+|++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~ 340 (720)
T PRK00254 261 KIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAF 340 (720)
T ss_pred HHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCce
Confidence 10 000 0013469999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC---CCcEEEEecChhh----HhhcCCCCCCcccc---
Q 001615 631 VYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV---QPGVCYKLYPRII----HDAMLPYQLPEILR--- 700 (1044)
Q Consensus 631 ~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~---~~G~c~~L~t~~~----~~~l~~~~~pei~r--- 700 (1044)
++||... ..|+. ....+++.++|+||+|||||. ..|.|+.+.+... ++.+.. ..||-+.
T Consensus 341 ~vVI~~~----~~~~~------~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~-~~pe~l~s~l 409 (720)
T PRK00254 341 RVIIRDT----KRYSN------FGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIF-GKPEKLFSML 409 (720)
T ss_pred EEEECCc----eEcCC------CCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHHh-CCchhhhccC
Confidence 9999632 22321 122345667999999999996 4699999986533 333311 1222211
Q ss_pred ---CChHHHHHHHHhcc-CC---chhhhhhcCC---CCCC----HHHHHHHHHHHHHcCCCCCC----CCcCcccccccc
Q 001615 701 ---TPLQELCLHIKSLQ-LG---TVGSFLSKAL---QPPD----PLAVQNAIELLKTIGALDDM----ENLTPLGRHLCT 762 (1044)
Q Consensus 701 ---~~L~~~~L~~k~l~-~~---~~~~fl~~~~---~pP~----~~~i~~al~~L~~lgal~~~----~~lT~lG~~l~~ 762 (1044)
..|...++.....+ +. ++.+|+...+ ..|+ .+.++.+++.|.+.+.|+.+ -..|++|+.++.
T Consensus 410 ~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~s~ 489 (720)
T PRK00254 410 SNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENEFIDIDLEDRFIPLPLGIRTSQ 489 (720)
T ss_pred CchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCCCeEEcCCCCEeeChHHHHHHH
Confidence 12233333333322 22 2334443332 2233 34678889999999998643 357999999999
Q ss_pred ccCChhhHHHHHHhhhc----cChHHHHHHHhcc
Q 001615 763 LPVDPNIGKMLLMGAIF----QCLNPALTIAAAL 792 (1044)
Q Consensus 763 lpl~p~~~k~ll~~~~~----~c~~~~l~iaa~l 792 (1044)
++++|..++++..+..- .....++.+.|..
T Consensus 490 ~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~ 523 (720)
T PRK00254 490 LYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIAST 523 (720)
T ss_pred HhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCC
Confidence 99999999998766431 2344566665543
No 39
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.7e-39 Score=377.78 Aligned_cols=339 Identities=15% Similarity=0.180 Sum_probs=243.1
Q ss_pred HHHHHhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEccc
Q 001615 260 ERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPR 339 (1044)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~ 339 (1044)
..+.++..++.+.+-+...+..-++++|.++++.+.++++++++||||||||+++.+++++.+.. ....+++|+++|+
T Consensus 28 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~--~~~~~~~lil~Pt 105 (401)
T PTZ00424 28 DSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY--DLNACQALILAPT 105 (401)
T ss_pred CCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC--CCCCceEEEECCC
Confidence 34555555555555555555566788999999999999999999999999999999999987632 2235689999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEEec------cccCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccc
Q 001615 340 RISAISVAARVSSERGENLGETVGYQIRL------ESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGM 412 (1044)
Q Consensus 340 r~la~qva~rv~~~~~~~~g~~vgy~ir~------~~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~ 412 (1044)
++||.|+.+.+.... ...+..++..... ......+.+|+|+||+.|.+.+..+. .++++++|||||||+ ..
T Consensus 106 ~~L~~Q~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~-~~ 183 (401)
T PTZ00424 106 RELAQQIQKVVLALG-DYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE-ML 183 (401)
T ss_pred HHHHHHHHHHHHHHh-hhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH-HH
Confidence 999999987665543 2233222221111 11223457999999999999988766 789999999999994 34
Q ss_pred hhHHHHHHHHHHcccCCcccEEEcccCCChHH--HH-hhhCCCCeecCCCCccccceeehHHHHHhhhcccCcccccccc
Q 001615 413 NEDFLLIILRDLLPRRPDLRLILMSATINADL--FS-KYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQG 489 (1044)
Q Consensus 413 ~~d~ll~~lk~~~~~~~~~qiilmSATl~~~~--~~-~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~ 489 (1044)
+.++...+.+.+....++.|+|++|||++.+. +. .|+.++..+.+.........
T Consensus 184 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 240 (401)
T PTZ00424 184 SRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEG----------------------- 240 (401)
T ss_pred hcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCC-----------------------
Confidence 44444444444445567899999999998764 22 33333222211111000000
Q ss_pred ccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHH
Q 001615 490 NSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISK 569 (1044)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~ 569 (1044)
+...+ ..... .+.....+..+.......++||||+++++++.
T Consensus 241 --------------~~~~~---------~~~~~---------------~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~ 282 (401)
T PTZ00424 241 --------------IRQFY---------VAVEK---------------EEWKFDTLCDLYETLTITQAIIYCNTRRKVDY 282 (401)
T ss_pred --------------ceEEE---------EecCh---------------HHHHHHHHHHHHHhcCCCeEEEEecCcHHHHH
Confidence 00000 00000 00011223333334455789999999999999
Q ss_pred HHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceecccccc
Q 001615 570 LLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNK 649 (1044)
Q Consensus 570 l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~ 649 (1044)
+++.|.. .++.+..+||+|++++|..+++.|++|+.+|||||+++++|||||+|++||++++|.
T Consensus 283 l~~~l~~-------~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~--------- 346 (401)
T PTZ00424 283 LTKKMHE-------RDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPA--------- 346 (401)
T ss_pred HHHHHHH-------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCC---------
Confidence 9999986 457799999999999999999999999999999999999999999999999999988
Q ss_pred ccccccccccHhhHHHhcccCCCC-CCcEEEEecChhhHh
Q 001615 650 LACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIHD 688 (1044)
Q Consensus 650 ~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~~~ 688 (1044)
|..+|+||+|||||. ..|.|+.|+++++.+
T Consensus 347 ---------s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~ 377 (401)
T PTZ00424 347 ---------SPENYIHRIGRSGRFGRKGVAINFVTPDDIE 377 (401)
T ss_pred ---------CHHHEeecccccccCCCCceEEEEEcHHHHH
Confidence 666999999999999 789999999987654
No 40
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-39 Score=349.70 Aligned_cols=358 Identities=19% Similarity=0.193 Sum_probs=245.8
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhcc----CCCCcEEEEEcccHHHHHHHHHHHHHHhC
Q 001615 280 KLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSL----RGADCNIICTQPRRISAISVAARVSSERG 355 (1044)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~----~~~~~~ilv~~P~r~la~qva~rv~~~~~ 355 (1044)
.-.++.+|++.|+.+++++|++|-++||||||++|.+||++.+.... +..++-+||++||||||.|+++.+.+...
T Consensus 157 i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~ 236 (708)
T KOG0348|consen 157 ISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLK 236 (708)
T ss_pred cCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhc
Confidence 34567899999999999999999999999999999999999987542 23466899999999999999999988876
Q ss_pred CCCCcEEEEEEeccccCC------CCccEEEEchHHHHHHHhcCC--CCCccceEEechhhhccchhHHHHHH---HHHH
Q 001615 356 ENLGETVGYQIRLESKRS------AQTRLLFCTTGVLLRQLVEDP--DLSCVSHLLVDEIHERGMNEDFLLII---LRDL 424 (1044)
Q Consensus 356 ~~~g~~vgy~ir~~~~~~------~~~~I~v~T~g~Ll~~l~~~~--~L~~~~~lIiDEaHeR~~~~d~ll~~---lk~~ 424 (1044)
...-..-|+-+..+.+.+ .+.+|+|+|||+|+++|.+-. .++++.+||+||+| |-++.+|...+ ++.+
T Consensus 237 ~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaD-rlleLGfekdit~Il~~v 315 (708)
T KOG0348|consen 237 PFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEAD-RLLELGFEKDITQILKAV 315 (708)
T ss_pred CceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchh-HHHhccchhhHHHHHHHH
Confidence 543333355555555443 478899999999999999866 67899999999999 76777765443 3333
Q ss_pred cc----------cCCcccEEEcccCCChH--HHHhhhCCCCeecCCCCccccceeehHHHHHhhhcc-cCcccccccccc
Q 001615 425 LP----------RRPDLRLILMSATINAD--LFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYK-MNSKLDSFQGNS 491 (1044)
Q Consensus 425 ~~----------~~~~~qiilmSATl~~~--~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 491 (1044)
-. ..+.+|-+++|||+... .+++.--..|+..--...+.-..- -.+.+...... .....+.+.
T Consensus 316 ~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p-~~~a~~ev~~~~~~~~l~~~~--- 391 (708)
T KOG0348|consen 316 HSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNP-KDKAVQEVDDGPAGDKLDSFA--- 391 (708)
T ss_pred hhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCc-chhhhhhcCCccccccccccc---
Confidence 11 12247889999999654 344432222222111110000000 00000000000 000000000
Q ss_pred ccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHH
Q 001615 492 RRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLL 571 (1044)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~ 571 (1044)
..+.+ ...|... ....-+-.+.+++..+++.....+++||+.+.+.++.-+
T Consensus 392 --------iPeqL---------~qry~vV------------PpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy 442 (708)
T KOG0348|consen 392 --------IPEQL---------LQRYTVV------------PPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHY 442 (708)
T ss_pred --------CcHHh---------hhceEec------------CCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHH
Confidence 00000 0011000 111112235566667777777789999999999999998
Q ss_pred HHHHccccC---------------CCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeC
Q 001615 572 DQIKVNKFL---------------GDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDC 636 (1044)
Q Consensus 572 ~~L~~~~~~---------------~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~ 636 (1044)
+++...... .-..+..++-|||+|++++|..+|+.|.....-||+|||||+||||+|+|++||.|
T Consensus 443 ~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQY 522 (708)
T KOG0348|consen 443 SLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQY 522 (708)
T ss_pred HHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEe
Confidence 888642111 11245679999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeccccccccccccccccHhhHHHhcccCCCC-CCcEEEEecChh--hHhh
Q 001615 637 GKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRI--IHDA 689 (1044)
Q Consensus 637 g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~--~~~~ 689 (1044)
+.|. |.++|+||+||+.|. ..|.+..|..+. +|..
T Consensus 523 d~P~------------------s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~ 560 (708)
T KOG0348|consen 523 DPPF------------------STADYLHRVGRTARAGEKGEALLFLLPSEAEYVN 560 (708)
T ss_pred CCCC------------------CHHHHHHHhhhhhhccCCCceEEEecccHHHHHH
Confidence 9998 777999999999999 678887776543 4543
No 41
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=4.4e-40 Score=345.52 Aligned_cols=349 Identities=17% Similarity=0.201 Sum_probs=255.5
Q ss_pred ccccccccCCCCCCCchHHHhHHHHHHHHHHHhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhc
Q 001615 233 KLSVKVANTISPPQSDSAKERLNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTT 312 (1044)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt 312 (1044)
..|.++|. |+.+|.+++.+. .+.+.++.....-++++|-+-++.+++|+++|-+|-||||||+
T Consensus 160 veGd~ipP----PIksF~eMKFP~-------------~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTl 222 (610)
T KOG0341|consen 160 VEGDDIPP----PIKSFKEMKFPK-------------PLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTL 222 (610)
T ss_pred eeCCCCCC----chhhhhhccCCH-------------HHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceE
Confidence 34555554 777776666544 4445666677788889999999999999999999999999998
Q ss_pred hHHHHHHHHHHhc------cCCCCcEEEEEcccHHHHHHHHHHHHHHhC---CCC------CcEE-EEEEec-cccCCCC
Q 001615 313 QLPQFILEEELSS------LRGADCNIICTQPRRISAISVAARVSSERG---ENL------GETV-GYQIRL-ESKRSAQ 375 (1044)
Q Consensus 313 ~~p~~il~~~~~~------~~~~~~~ilv~~P~r~la~qva~rv~~~~~---~~~------g~~v-gy~ir~-~~~~~~~ 375 (1044)
.|.+|++-.++.+ .++.++--|++.|.|+||.|.++-+..+.. +.- +.-+ |.-++. ......+
T Consensus 223 vFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~G 302 (610)
T KOG0341|consen 223 VFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRG 302 (610)
T ss_pred EEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcC
Confidence 8887776555433 234556667777999999999876655421 100 0011 111211 1223568
Q ss_pred ccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccCCChHH--HHhhhCCC
Q 001615 376 TRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINADL--FSKYFGNA 452 (1044)
Q Consensus 376 ~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSATl~~~~--~~~~f~~~ 452 (1044)
.+|+|+|||+|.++|.... .|+-++++.+|||| |+++++|.-.+..........+|+++||||++..+ |++----.
T Consensus 303 vHivVATPGRL~DmL~KK~~sLd~CRyL~lDEAD-RmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVK 381 (610)
T KOG0341|consen 303 VHIVVATPGRLMDMLAKKIMSLDACRYLTLDEAD-RMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVK 381 (610)
T ss_pred eeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHH-HHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhccc
Confidence 9999999999999998776 89999999999999 99999998887555544455789999999999875 33211112
Q ss_pred Ce-ecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhh
Q 001615 453 PT-VHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAW 531 (1044)
Q Consensus 453 ~~-i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (1044)
|+ ++| ||.-... + +++....|...
T Consensus 382 PvtvNV-GRAGAAs---l-dViQevEyVkq-------------------------------------------------- 406 (610)
T KOG0341|consen 382 PVTVNV-GRAGAAS---L-DVIQEVEYVKQ-------------------------------------------------- 406 (610)
T ss_pred ceEEec-ccccccc---h-hHHHHHHHHHh--------------------------------------------------
Confidence 22 222 1110000 0 11111111000
Q ss_pred hhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCC
Q 001615 532 SAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNK 611 (1044)
Q Consensus 532 ~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~ 611 (1044)
...++-++..+. ....++|||+..+.+++.+.++|.- .++.++.+||+..+++|..+++.|+.|+
T Consensus 407 ------EaKiVylLeCLQ--KT~PpVLIFaEkK~DVD~IhEYLLl-------KGVEavaIHGGKDQedR~~ai~afr~gk 471 (610)
T KOG0341|consen 407 ------EAKIVYLLECLQ--KTSPPVLIFAEKKADVDDIHEYLLL-------KGVEAVAIHGGKDQEDRHYAIEAFRAGK 471 (610)
T ss_pred ------hhhhhhHHHHhc--cCCCceEEEeccccChHHHHHHHHH-------ccceeEEeecCcchhHHHHHHHHHhcCC
Confidence 001333444333 4456899999999999999999975 6788999999999999999999999999
Q ss_pred cEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC-CCcEEEEecChhhH
Q 001615 612 RKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIH 687 (1044)
Q Consensus 612 ~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~~ 687 (1044)
..||||||+|+.|+|+|+|.+||||++|.+.. +|+||+||+||. +.|.+..|+.+...
T Consensus 472 KDVLVATDVASKGLDFp~iqHVINyDMP~eIE------------------NYVHRIGRTGRsg~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 472 KDVLVATDVASKGLDFPDIQHVINYDMPEEIE------------------NYVHRIGRTGRSGKTGIATTFINKNQE 530 (610)
T ss_pred CceEEEecchhccCCCccchhhccCCChHHHH------------------HHHHHhcccCCCCCcceeeeeecccch
Confidence 99999999999999999999999999999877 999999999999 78999999988654
No 42
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.2e-37 Score=382.67 Aligned_cols=341 Identities=18% Similarity=0.131 Sum_probs=231.2
Q ss_pred hHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHH
Q 001615 270 SGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAAR 349 (1044)
Q Consensus 270 ~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~r 349 (1044)
.+.+.++..+...+|++|.++++.+++|+++++++|||||||.++.+++++.+... ..+++|++.|||+||.|+.++
T Consensus 24 ~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~---~~~~aL~l~PtraLa~q~~~~ 100 (742)
T TIGR03817 24 DVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD---PRATALYLAPTKALAADQLRA 100 (742)
T ss_pred HHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC---CCcEEEEEcChHHHHHHHHHH
Confidence 34455555566678899999999999999999999999999999999999988642 356899999999999999999
Q ss_pred HHHHhCCCCCcEEEEEE---ecc--ccCCCCccEEEEchHHHHHHHhcCC-----CCCccceEEechhhhc-cc---hhH
Q 001615 350 VSSERGENLGETVGYQI---RLE--SKRSAQTRLLFCTTGVLLRQLVEDP-----DLSCVSHLLVDEIHER-GM---NED 415 (1044)
Q Consensus 350 v~~~~~~~~g~~vgy~i---r~~--~~~~~~~~I~v~T~g~Ll~~l~~~~-----~L~~~~~lIiDEaHeR-~~---~~d 415 (1044)
+.+.. ..+..++--. ..+ .....+++|+++||++|...+.... .|+++++|||||||+. +. ...
T Consensus 101 l~~l~--~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~ 178 (742)
T TIGR03817 101 VRELT--LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVA 178 (742)
T ss_pred HHHhc--cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHH
Confidence 87654 2222232110 111 1123468999999999986544321 4889999999999952 11 122
Q ss_pred HHHHHHHHHcc-cCCcccEEEcccCCCh-HHHHhhhCCCCeecCCCCccccc---eeehHHHHHhhhcccCccccccccc
Q 001615 416 FLLIILRDLLP-RRPDLRLILMSATINA-DLFSKYFGNAPTVHIPGLTFPVT---DLFLEDVLEKTRYKMNSKLDSFQGN 490 (1044)
Q Consensus 416 ~ll~~lk~~~~-~~~~~qiilmSATl~~-~~~~~~f~~~~~i~v~g~~~pv~---~~~l~~~~~~~~~~~~~~~~~~~~~ 490 (1044)
.++..++.+.. ...++|+|++|||++. ..+.+++.+.++..+.....|.. ..+..... ......
T Consensus 179 ~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~-----------~~~~~~ 247 (742)
T TIGR03817 179 LVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPL-----------TELTGE 247 (742)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCc-----------cccccc
Confidence 22333333332 2346899999999943 34454444444433332211111 11100000 000000
Q ss_pred cccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHH
Q 001615 491 SRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKL 570 (1044)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l 570 (1044)
.... . + .........++..+.. .+.++||||++++.++.+
T Consensus 248 ---------~~~~---------~-----------r---------~~~~~~~~~~l~~l~~--~~~~~IVF~~sr~~ae~l 287 (742)
T TIGR03817 248 ---------NGAP---------V-----------R---------RSASAEAADLLADLVA--EGARTLTFVRSRRGAELV 287 (742)
T ss_pred ---------cccc---------c-----------c---------cchHHHHHHHHHHHHH--CCCCEEEEcCCHHHHHHH
Confidence 0000 0 0 0000012233444443 257899999999999999
Q ss_pred HHHHHcccc-CCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceecccccc
Q 001615 571 LDQIKVNKF-LGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNK 649 (1044)
Q Consensus 571 ~~~L~~~~~-~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~ 649 (1044)
+..|..... .....+..+..+||++++++|+++++.|++|+.+||||||++|+|||||+|++||++|+|.
T Consensus 288 ~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~--------- 358 (742)
T TIGR03817 288 AAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPG--------- 358 (742)
T ss_pred HHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCC---------
Confidence 998875210 0011245688999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccHhhHHHhcccCCCC-CCcEEEEecCh
Q 001615 650 LACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPR 684 (1044)
Q Consensus 650 ~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~ 684 (1044)
|.++|+||+|||||. +.|.++.+.+.
T Consensus 359 ---------s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 359 ---------TRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred ---------CHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 555999999999999 77999998864
No 43
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-38 Score=325.46 Aligned_cols=314 Identities=18% Similarity=0.211 Sum_probs=241.2
Q ss_pred cCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC
Q 001615 279 EKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENL 358 (1044)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~ 358 (1044)
+.--+.|+|++.|+.++.|+++++-|..|+|||.++.+|+|+.+-. .......+|++|||+||.|+. +++++++...
T Consensus 104 G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~--~~~~IQ~~ilVPtrelALQtS-qvc~~lskh~ 180 (459)
T KOG0326|consen 104 GFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP--KKNVIQAIILVPTRELALQTS-QVCKELSKHL 180 (459)
T ss_pred ccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc--cccceeEEEEeecchhhHHHH-HHHHHHhccc
Confidence 3444567999999999999999999999999999999999998743 233456788889999999986 4556776666
Q ss_pred CcEEEE-----EEeccc-cCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccchhHHHHHHHHHHcccCCcc
Q 001615 359 GETVGY-----QIRLES-KRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDL 431 (1044)
Q Consensus 359 g~~vgy-----~ir~~~-~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~ 431 (1044)
|..|-. ..+.+- +.....+++|+|||+++++...+- .++++..+|+|||| ..+..||-..+-+.+.-..++.
T Consensus 181 ~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD-KlLs~~F~~~~e~li~~lP~~r 259 (459)
T KOG0326|consen 181 GIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD-KLLSVDFQPIVEKLISFLPKER 259 (459)
T ss_pred CeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhh-hhhchhhhhHHHHHHHhCCccc
Confidence 654422 222222 235578999999999999998876 89999999999999 5688899888877777778899
Q ss_pred cEEEcccCCChHH--H-HhhhCCCCeecCCCCc--cccceeehHHHHHhhhcccCccccccccccccccccccchhhhhh
Q 001615 432 RLILMSATINADL--F-SKYFGNAPTVHIPGLT--FPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTA 506 (1044)
Q Consensus 432 qiilmSATl~~~~--~-~~~f~~~~~i~v~g~~--~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (1044)
|++++|||+|... | .+|+.++-.|+.-... .-|..+|.-
T Consensus 260 QillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYaf------------------------------------ 303 (459)
T KOG0326|consen 260 QILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAF------------------------------------ 303 (459)
T ss_pred eeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheee------------------------------------
Confidence 9999999997542 3 3555443333221100 001111100
Q ss_pred hhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCe
Q 001615 507 LFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKF 586 (1044)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~ 586 (1044)
+........+..+...-.-...+|||++...++-++..+.+ .++
T Consensus 304 -----------------------------V~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITe-------lGy 347 (459)
T KOG0326|consen 304 -----------------------------VEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE-------LGY 347 (459)
T ss_pred -----------------------------echhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHh-------ccc
Confidence 00000122222222222334579999999999999999987 688
Q ss_pred EEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHh
Q 001615 587 LVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQR 666 (1044)
Q Consensus 587 ~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR 666 (1044)
.++.+|+.|-++.|.+||..|++|.++.|||||.+.|||||++|++|||+++||..+ +|.||
T Consensus 348 scyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aE------------------tYLHR 409 (459)
T KOG0326|consen 348 SCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAE------------------TYLHR 409 (459)
T ss_pred hhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHH------------------HHHHH
Confidence 899999999999999999999999999999999999999999999999999999555 99999
Q ss_pred cccCCCC-CCcEEEEecChhh
Q 001615 667 RGRAGRV-QPGVCYKLYPRII 686 (1044)
Q Consensus 667 ~GRAGR~-~~G~c~~L~t~~~ 686 (1044)
+||+||. ..|.++.|.+-++
T Consensus 410 IGRsGRFGhlGlAInLityed 430 (459)
T KOG0326|consen 410 IGRSGRFGHLGLAINLITYED 430 (459)
T ss_pred ccCCccCCCcceEEEEEehhh
Confidence 9999999 7899999998654
No 44
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.4e-38 Score=343.82 Aligned_cols=376 Identities=19% Similarity=0.205 Sum_probs=254.6
Q ss_pred HHHHhccChhHHHHHHHhcCCCchHHHHHHHHHHHcC-CeEEEEecCCCchhchHHHHHHHHHH---------hccC--C
Q 001615 261 RQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAEN-QVLVVSGETGCGKTTQLPQFILEEEL---------SSLR--G 328 (1044)
Q Consensus 261 ~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~-~~vii~a~TGSGKTt~~p~~il~~~~---------~~~~--~ 328 (1044)
.|..+..+......+.+.+...++++|...|+++..+ .|++..|+||||||++|-+||++... .+.. .
T Consensus 182 AW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~ 261 (731)
T KOG0347|consen 182 AWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKY 261 (731)
T ss_pred HHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhcc
Confidence 4666777777778888888888899999999999888 79999999999999999999999433 2222 2
Q ss_pred CCcEEEEEcccHHHHHHHHHHHHHHhC---CCCCcEEEEE--EeccccCCCCccEEEEchHHHHHHHhcCC----CCCcc
Q 001615 329 ADCNIICTQPRRISAISVAARVSSERG---ENLGETVGYQ--IRLESKRSAQTRLLFCTTGVLLRQLVEDP----DLSCV 399 (1044)
Q Consensus 329 ~~~~ilv~~P~r~la~qva~rv~~~~~---~~~g~~vgy~--ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~----~L~~~ 399 (1044)
..+..||+.|||+||.||.+.+..... ..+-..+|-- ..++...+...+|+|+|||+|..++..+. .+.++
T Consensus 262 ~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~v 341 (731)
T KOG0347|consen 262 VKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKV 341 (731)
T ss_pred CcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhc
Confidence 233499999999999999988755432 2222222211 12223334478999999999999998876 68899
Q ss_pred ceEEechhhhccchhHHHHH---HHHHHc--ccCCcccEEEcccCCChHHHHhhhCCCCeecCCCCccccceeehHHHHH
Q 001615 400 SHLLVDEIHERGMNEDFLLI---ILRDLL--PRRPDLRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLE 474 (1044)
Q Consensus 400 ~~lIiDEaHeR~~~~d~ll~---~lk~~~--~~~~~~qiilmSATl~~~~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~ 474 (1044)
+++||||+| |++.-+.+.. +|+.+. +..+.+|+++||||+.-..+...-... ...++...+ ..-++..+.
T Consensus 342 kcLVlDEaD-RmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~---k~~~k~~~~-~~kiq~Lmk 416 (731)
T KOG0347|consen 342 KCLVLDEAD-RMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSR---KKKDKEDEL-NAKIQHLMK 416 (731)
T ss_pred eEEEEccHH-HHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhh---hccchhhhh-hHHHHHHHH
Confidence 999999999 8887765544 444444 245678999999998654332110000 000000000 011222233
Q ss_pred hhhcccCccccccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCC
Q 001615 475 KTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGD 554 (1044)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~ 554 (1044)
...+.-.+..-+... +......+.+..-...+. .-| --+.+++ ..-+
T Consensus 417 ~ig~~~kpkiiD~t~-------q~~ta~~l~Es~I~C~~~--------------------eKD-----~ylyYfl-~ryP 463 (731)
T KOG0347|consen 417 KIGFRGKPKIIDLTP-------QSATASTLTESLIECPPL--------------------EKD-----LYLYYFL-TRYP 463 (731)
T ss_pred HhCccCCCeeEecCc-------chhHHHHHHHHhhcCCcc--------------------ccc-----eeEEEEE-eecC
Confidence 333222110000000 000000000000000000 000 0011111 2357
Q ss_pred CCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEE
Q 001615 555 GAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVV 634 (1044)
Q Consensus 555 g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VI 634 (1044)
|++||||++.+.|.+|+-.|.. .++..++||+.|.+.+|.+-++.|+...--||||||||+||||||+|.|||
T Consensus 464 GrTlVF~NsId~vKRLt~~L~~-------L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVI 536 (731)
T KOG0347|consen 464 GRTLVFCNSIDCVKRLTVLLNN-------LDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVI 536 (731)
T ss_pred CceEEEechHHHHHHHHHHHhh-------cCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEE
Confidence 9999999999999999999986 567788899999999999999999999999999999999999999999999
Q ss_pred eCCCCcceeccccccccccccccccHhhHHHhcccCCCC-CCcEEEEecChhhHhhcCCCCCCccccCChHHHHHHHHh
Q 001615 635 DCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIHDAMLPYQLPEILRTPLQELCLHIKS 712 (1044)
Q Consensus 635 d~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~~~~l~~~~~pei~r~~L~~~~L~~k~ 712 (1044)
+|-.|+... .|+||.|||.|+ ..|....|+.+.. ..++..+|-.++.
T Consensus 537 HYqVPrtse------------------iYVHRSGRTARA~~~Gvsvml~~P~e-------------~~~~~KL~ktL~k 584 (731)
T KOG0347|consen 537 HYQVPRTSE------------------IYVHRSGRTARANSEGVSVMLCGPQE-------------VGPLKKLCKTLKK 584 (731)
T ss_pred EeecCCccc------------------eeEecccccccccCCCeEEEEeChHH-------------hHHHHHHHHHHhh
Confidence 999999666 899999999999 7899999987643 2456667766653
No 45
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.5e-35 Score=348.64 Aligned_cols=309 Identities=17% Similarity=0.193 Sum_probs=216.8
Q ss_pred CchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcE
Q 001615 282 PAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGET 361 (1044)
Q Consensus 282 pi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~ 361 (1044)
-.+++|.++++++++++++++++|||||||+++.++++.. ...+||+.|+|+|+.|..+++.. .+......
T Consensus 11 ~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~--------~~~~lVi~P~~~L~~dq~~~l~~-~gi~~~~l 81 (470)
T TIGR00614 11 SFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS--------DGITLVISPLISLMEDQVLQLKA-SGIPATFL 81 (470)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc--------CCcEEEEecHHHHHHHHHHHHHH-cCCcEEEE
Confidence 4567999999999999999999999999999988887752 24688999999999999888754 33322111
Q ss_pred EEEEEec------cccCCCCccEEEEchHHHHHHH--hcCC-CCCccceEEechhhhcc-chhHHHHHH--HHHHcccCC
Q 001615 362 VGYQIRL------ESKRSAQTRLLFCTTGVLLRQL--VEDP-DLSCVSHLLVDEIHERG-MNEDFLLII--LRDLLPRRP 429 (1044)
Q Consensus 362 vgy~ir~------~~~~~~~~~I~v~T~g~Ll~~l--~~~~-~L~~~~~lIiDEaHeR~-~~~d~ll~~--lk~~~~~~~ 429 (1044)
.+..... ........+|+|+||+++.... ...- .+.++++|||||||... +..+|...+ +..+....|
T Consensus 82 ~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~ 161 (470)
T TIGR00614 82 NSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFP 161 (470)
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcC
Confidence 1111000 0112335789999999875321 1111 46789999999999532 122333332 223444567
Q ss_pred cccEEEcccCCChHHH---HhhhC-CCCeecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccchhhhh
Q 001615 430 DLRLILMSATINADLF---SKYFG-NAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLT 505 (1044)
Q Consensus 430 ~~qiilmSATl~~~~~---~~~f~-~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (1044)
+.++++||||++.... .++++ ..+.+...+...|. .+| ... .+.
T Consensus 162 ~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~n-l~~----------~v~-----------------~~~---- 209 (470)
T TIGR00614 162 NVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPN-LYY----------EVR-----------------RKT---- 209 (470)
T ss_pred CCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCC-cEE----------EEE-----------------eCC----
Confidence 8999999999987643 33332 11211111100000 000 000 000
Q ss_pred hhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCC
Q 001615 506 ALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNK 585 (1044)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~ 585 (1044)
...+..++..+.....+..+||||+++++++.+++.|.. .+
T Consensus 210 --------------------------------~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~-------~g 250 (470)
T TIGR00614 210 --------------------------------PKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQN-------LG 250 (470)
T ss_pred --------------------------------ccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHh-------cC
Confidence 001233444444334455679999999999999999986 46
Q ss_pred eEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHH
Q 001615 586 FLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQ 665 (1044)
Q Consensus 586 ~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~Q 665 (1044)
+.+..+||+|++++|..+++.|+.|..+|||||+++++|||+|+|++||++++|+ |.++|+|
T Consensus 251 ~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~------------------s~~~y~Q 312 (470)
T TIGR00614 251 IAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPK------------------SMESYYQ 312 (470)
T ss_pred CCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCC------------------CHHHHHh
Confidence 7789999999999999999999999999999999999999999999999999999 5569999
Q ss_pred hcccCCCC-CCcEEEEecChhhHh
Q 001615 666 RRGRAGRV-QPGVCYKLYPRIIHD 688 (1044)
Q Consensus 666 R~GRAGR~-~~G~c~~L~t~~~~~ 688 (1044)
|+|||||. .+|.|+.+|+..+..
T Consensus 313 r~GRaGR~G~~~~~~~~~~~~d~~ 336 (470)
T TIGR00614 313 ESGRAGRDGLPSECHLFYAPADIN 336 (470)
T ss_pred hhcCcCCCCCCceEEEEechhHHH
Confidence 99999999 789999999987654
No 46
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=3.2e-35 Score=323.31 Aligned_cols=457 Identities=20% Similarity=0.237 Sum_probs=327.9
Q ss_pred HhccChhHHHHHHHhcCCCchHHHHHHHHH-HHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHH
Q 001615 264 KLKSSDSGKAMLSFREKLPAFKMKAEFLKA-VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRIS 342 (1044)
Q Consensus 264 ~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~-i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~l 342 (1044)
.+...+.++.+++.++.-.+.|+|.-++++ +++|+|++|+.+|+||||+..-+.=+..++.. +.+.|+++|..+|
T Consensus 198 eLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~----g~KmlfLvPLVAL 273 (830)
T COG1202 198 ELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG----GKKMLFLVPLVAL 273 (830)
T ss_pred ccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC----CCeEEEEehhHHh
Confidence 455667788999999999999999999987 78999999999999999988877777766642 4589999999999
Q ss_pred HHHHHHHHHHHhCCCCCcEEEEEE-----ecc-----ccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhh----
Q 001615 343 AISVAARVSSERGENLGETVGYQI-----RLE-----SKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIH---- 408 (1044)
Q Consensus 343 a~qva~rv~~~~~~~~g~~vgy~i-----r~~-----~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaH---- 408 (1044)
|+|-++.+.... ..+|..+...+ +.. ...+.+++|+|.|.+=+--+|..+..+.++..|||||+|
T Consensus 274 ANQKy~dF~~rY-s~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~d 352 (830)
T COG1202 274 ANQKYEDFKERY-SKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLED 352 (830)
T ss_pred hcchHHHHHHHh-hcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccc
Confidence 999999997765 45665554332 211 223568899999999888888888899999999999999
Q ss_pred -hccchhHHHHHHHHHHcccCCcccEEEcccCC-ChHHHHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccc
Q 001615 409 -ERGMNEDFLLIILRDLLPRRPDLRLILMSATI-NADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDS 486 (1044)
Q Consensus 409 -eR~~~~d~ll~~lk~~~~~~~~~qiilmSATl-~~~~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~ 486 (1044)
||+...|=+..-||.+ .|+.|+|.+|||+ |++.++++++ ...+.-..|+.|++.+.+-.
T Consensus 353 eERG~RLdGLI~RLr~l---~~~AQ~i~LSATVgNp~elA~~l~-a~lV~y~~RPVplErHlvf~--------------- 413 (830)
T COG1202 353 EERGPRLDGLIGRLRYL---FPGAQFIYLSATVGNPEELAKKLG-AKLVLYDERPVPLERHLVFA--------------- 413 (830)
T ss_pred hhcccchhhHHHHHHHh---CCCCeEEEEEeecCChHHHHHHhC-CeeEeecCCCCChhHeeeee---------------
Confidence 6888888777766665 5688999999998 8889999996 44555677888887654310
Q ss_pred cccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHH----HHHhccCCCCEEEEeC
Q 001615 487 FQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIE----YICRHEGDGAILVFLT 562 (1044)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~----~i~~~~~~g~iLVFl~ 562 (1044)
++ ...+.+ ++..++. ...+..-.|.+|||+.
T Consensus 414 --~~------e~eK~~-------------------------------------ii~~L~k~E~~~~sskg~rGQtIVFT~ 448 (830)
T COG1202 414 --RN------ESEKWD-------------------------------------IIARLVKREFSTESSKGYRGQTIVFTY 448 (830)
T ss_pred --cC------chHHHH-------------------------------------HHHHHHHHHHhhhhccCcCCceEEEec
Confidence 00 000111 1222221 1222344689999999
Q ss_pred CHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcce
Q 001615 563 GWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKET 642 (1044)
Q Consensus 563 ~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~ 642 (1044)
+++.++.+++.|.. .++.+.|+|++|+..+|+.+...|..+...++|+|..++.|+|+|.-.+|..+=
T Consensus 449 SRrr~h~lA~~L~~-------kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsL----- 516 (830)
T COG1202 449 SRRRCHELADALTG-------KGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESL----- 516 (830)
T ss_pred chhhHHHHHHHhhc-------CCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHH-----
Confidence 99999999999986 577888999999999999999999999999999999999999999766554422
Q ss_pred eccccccccccccccccHhhHHHhcccCCCC---CCcEEEEecChh-hHh-hcCC----------CCCCccccC------
Q 001615 643 SYDALNKLACLLPSWISKASAHQRRGRAGRV---QPGVCYKLYPRI-IHD-AMLP----------YQLPEILRT------ 701 (1044)
Q Consensus 643 ~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~---~~G~c~~L~t~~-~~~-~l~~----------~~~pei~r~------ 701 (1044)
.+...|+|..+|.|+.|||||. ..|+.|.|.... .|. +|.+ ...||-...
T Consensus 517 ---------aMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~ 587 (830)
T COG1202 517 ---------AMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEED 587 (830)
T ss_pred ---------HcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHH
Confidence 2346899999999999999998 579999997643 232 2222 122322211
Q ss_pred ChHHHHHHHHhccCC-c---hhhhhhcCCCCCCHHHHHHHHHHHHHcCCCCCCC---CcCccccccccccCChhhHHHHH
Q 001615 702 PLQELCLHIKSLQLG-T---VGSFLSKALQPPDPLAVQNAIELLKTIGALDDME---NLTPLGRHLCTLPVDPNIGKMLL 774 (1044)
Q Consensus 702 ~L~~~~L~~k~l~~~-~---~~~fl~~~~~pP~~~~i~~al~~L~~lgal~~~~---~lT~lG~~l~~lpl~p~~~k~ll 774 (1044)
.++++ |.. .+.. . +...-+..+- ..-....++..|.+.|+++.+| ++|+.|+.++..-+.|.-+..|.
T Consensus 588 e~e~v-LA~--~~v~~s~~~i~~v~~~~~g--~~~~~~k~l~~Lee~g~i~~~G~~v~~T~yGrava~~Fl~p~~a~~Ir 662 (830)
T COG1202 588 EEENV-LAS--AGVTNSLSVIERVNSLMLG--AAFDPKKALSKLEEYGMIKKKGNIVRPTPYGRAVAMSFLGPSEAEFIR 662 (830)
T ss_pred HHHHH-HHH--hhhcCcHHHHhhcChhhcc--ccCCHHHHHHHHHhcCCeeccCCEeeeccccceeEEeecCchHHHHHH
Confidence 12222 221 1111 1 1111101110 0122578999999999999776 69999999999999999999988
Q ss_pred HhhhccChHHHHHHHhccc-CCCccccCcchHHHHHHHHhhcCC
Q 001615 775 MGAIFQCLNPALTIAAALA-HRNPFVLPVNMQKEVDEAKRSFAG 817 (1044)
Q Consensus 775 ~~~~~~c~~~~l~iaa~l~-~~~~f~~p~~~~~~~~~~~~~~~~ 817 (1044)
.++ ..--+| +.|++.|. ..+.++.+.-++.-....+.++..
T Consensus 663 ~~v-~~~~~p-l~i~~~l~pfE~ayls~~l~r~i~~~~~~~vps 704 (830)
T COG1202 663 EGV-LASMDP-LRIAAELEPFENAYLSGFLKRAIESALRGRVPS 704 (830)
T ss_pred Hhh-hccCCh-HhHhhccccccccccChHHHHHHHHHhcCCCch
Confidence 875 444455 45555554 344444433344444445555443
No 47
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=8.1e-35 Score=364.78 Aligned_cols=395 Identities=20% Similarity=0.194 Sum_probs=247.5
Q ss_pred CchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccC----CCCcEEEEEcccHHHHHHHHHHHHHH----
Q 001615 282 PAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLR----GADCNIICTQPRRISAISVAARVSSE---- 353 (1044)
Q Consensus 282 pi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~----~~~~~ilv~~P~r~la~qva~rv~~~---- 353 (1044)
-++++|.++++.+.++++++|+||||||||+++.+++++.+..... ..++++|+++|+|+||.|+++++.+.
T Consensus 32 ~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i 111 (876)
T PRK13767 32 TFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEI 111 (876)
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999999999999999999999998764321 23568999999999999998765421
Q ss_pred ------hCCCC-CcEEEEEEec---cc---cCCCCccEEEEchHHHHHHHhcCC---CCCccceEEechhhh-----ccc
Q 001615 354 ------RGENL-GETVGYQIRL---ES---KRSAQTRLLFCTTGVLLRQLVEDP---DLSCVSHLLVDEIHE-----RGM 412 (1044)
Q Consensus 354 ------~~~~~-g~~vgy~ir~---~~---~~~~~~~I~v~T~g~Ll~~l~~~~---~L~~~~~lIiDEaHe-----R~~ 412 (1044)
.+..+ +..++..... .. ......+|+|+||++|..++.+.. .|.++++|||||||+ |+.
T Consensus 112 ~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~ 191 (876)
T PRK13767 112 REIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGV 191 (876)
T ss_pred HHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHH
Confidence 23333 2233322111 00 112357899999999987775432 578999999999995 233
Q ss_pred hhHHHHHHHHHHcccCCcccEEEcccCCC-hHHHHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCcccccccccc
Q 001615 413 NEDFLLIILRDLLPRRPDLRLILMSATIN-ADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNS 491 (1044)
Q Consensus 413 ~~d~ll~~lk~~~~~~~~~qiilmSATl~-~~~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~ 491 (1044)
.....+..++.+. .++.|+|++|||+. .+.+++|+........+.....+...+.... .......
T Consensus 192 ~l~~~L~rL~~l~--~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~----~i~v~~p-------- 257 (876)
T PRK13767 192 HLSLSLERLEELA--GGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPF----DIKVISP-------- 257 (876)
T ss_pred HHHHHHHHHHHhc--CCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccc----eEEEecc--------
Confidence 3333333344333 35789999999994 4677888764311100000000100010000 0000000
Q ss_pred ccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHH
Q 001615 492 RRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLL 571 (1044)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~ 571 (1044)
...+.. .. ..... ..+...+..+.. ..+++||||+|++.++.++
T Consensus 258 ------------~~~l~~----------~~-----------~~~~~-~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la 301 (876)
T PRK13767 258 ------------VDDLIH----------TP-----------AEEIS-EALYETLHELIK--EHRTTLIFTNTRSGAERVL 301 (876)
T ss_pred ------------Cccccc----------cc-----------cchhH-HHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHH
Confidence 000000 00 00000 001223333332 3468999999999999999
Q ss_pred HHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceecccccccc
Q 001615 572 DQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLA 651 (1044)
Q Consensus 572 ~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~ 651 (1044)
..|..... .......+..|||+|++++|..+++.|++|..+|||||+++|+|||||+|++||++|.|+
T Consensus 302 ~~L~~~~~-~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~----------- 369 (876)
T PRK13767 302 YNLRKRFP-EEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPK----------- 369 (876)
T ss_pred HHHHHhch-hhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCC-----------
Confidence 99975311 001246799999999999999999999999999999999999999999999999999998
Q ss_pred ccccccccHhhHHHhcccCCCC----CCcEEEEecChhhHh------hcCCC-C-CCccccCChHHHHHHHHhccCC---
Q 001615 652 CLLPSWISKASAHQRRGRAGRV----QPGVCYKLYPRIIHD------AMLPY-Q-LPEILRTPLQELCLHIKSLQLG--- 716 (1044)
Q Consensus 652 ~l~~~~iS~a~~~QR~GRAGR~----~~G~c~~L~t~~~~~------~l~~~-~-~pei~r~~L~~~~L~~k~l~~~--- 716 (1044)
|.++|+||+|||||. ..|.++.+-..+..+ ...+. . ...+...+++-++-++.++...
T Consensus 370 -------sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i~~~~~~~~~ 442 (876)
T PRK13767 370 -------SVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLAQHIVGMAIERPW 442 (876)
T ss_pred -------CHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHcCCC
Confidence 566999999999987 247777653322111 11111 1 1123334566666666544322
Q ss_pred ---chhhhhhcCC--CCCCHHHHHHHHHHHHHcC
Q 001615 717 ---TVGSFLSKAL--QPPDPLAVQNAIELLKTIG 745 (1044)
Q Consensus 717 ---~~~~fl~~~~--~pP~~~~i~~al~~L~~lg 745 (1044)
.+.+++..+. .--+.+..+..++.|..-+
T Consensus 443 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~ 476 (876)
T PRK13767 443 DIEEAYNIVRRAYPYRDLSDEDFESVLRYLAGDY 476 (876)
T ss_pred CHHHHHHHHhccCCcccCCHHHHHHHHHHHhccC
Confidence 2223322211 1124567888888887654
No 48
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=4.3e-35 Score=355.42 Aligned_cols=320 Identities=17% Similarity=0.126 Sum_probs=220.2
Q ss_pred cChhHHHHHHHh-cCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHH
Q 001615 267 SSDSGKAMLSFR-EKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAIS 345 (1044)
Q Consensus 267 ~~~~~~~~~~~r-~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~q 345 (1044)
.+..+...++.- +.--.+++|.++|++++.|+++++++|||+|||++|.+|++.. .+.+||+.|+++|+.+
T Consensus 444 w~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~--------~GiTLVISPLiSLmqD 515 (1195)
T PLN03137 444 WTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC--------PGITLVISPLVSLIQD 515 (1195)
T ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc--------CCcEEEEeCHHHHHHH
Confidence 334444444432 3446678999999999999999999999999999999998853 2478999999999985
Q ss_pred HHHHHHHHhCCCCCcEEEEEEec---c-------cc--CCCCccEEEEchHHHHH------HHhcCCCCCccceEEechh
Q 001615 346 VAARVSSERGENLGETVGYQIRL---E-------SK--RSAQTRLLFCTTGVLLR------QLVEDPDLSCVSHLLVDEI 407 (1044)
Q Consensus 346 va~rv~~~~~~~~g~~vgy~ir~---~-------~~--~~~~~~I~v~T~g~Ll~------~l~~~~~L~~~~~lIiDEa 407 (1044)
....+.. . |..+.+-... . .. .....+|+|+|||+|.. .+..-.....+++||||||
T Consensus 516 QV~~L~~-~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEA 590 (1195)
T PLN03137 516 QIMNLLQ-A----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEA 590 (1195)
T ss_pred HHHHHHh-C----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcc
Confidence 4444432 2 2222221110 0 00 11467999999999752 2221113455899999999
Q ss_pred hhcc-chhHHHHHHH--HHHcccCCcccEEEcccCCChHH---HHhhhCCC-CeecCCCCccccceeehHHHHHhhhccc
Q 001615 408 HERG-MNEDFLLIIL--RDLLPRRPDLRLILMSATINADL---FSKYFGNA-PTVHIPGLTFPVTDLFLEDVLEKTRYKM 480 (1044)
Q Consensus 408 HeR~-~~~d~ll~~l--k~~~~~~~~~qiilmSATl~~~~---~~~~f~~~-~~i~v~g~~~pv~~~~l~~~~~~~~~~~ 480 (1044)
|+.. +..||-.... ..+....|+.+++++|||++... +.+.++-. +++...+..-| ..+|. +
T Consensus 591 HcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~Rp-NL~y~----------V 659 (1195)
T PLN03137 591 HCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRP-NLWYS----------V 659 (1195)
T ss_pred hhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCcc-ceEEE----------E
Confidence 9632 2234544332 23445567889999999997764 33444321 11111110000 00000 0
Q ss_pred CccccccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEE
Q 001615 481 NSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVF 560 (1044)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF 560 (1044)
. .+.. ..+..+...+......+..|||
T Consensus 660 v-----------------~k~k------------------------------------k~le~L~~~I~~~~~~esgIIY 686 (1195)
T PLN03137 660 V-----------------PKTK------------------------------------KCLEDIDKFIKENHFDECGIIY 686 (1195)
T ss_pred e-----------------ccch------------------------------------hHHHHHHHHHHhcccCCCceeE
Confidence 0 0000 0012223333333345678999
Q ss_pred eCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCc
Q 001615 561 LTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAK 640 (1044)
Q Consensus 561 l~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k 640 (1044)
|.++++++.+++.|.. .++.+.++||+|++++|..+++.|..|..+|||||+++++|||+|||++||++++|+
T Consensus 687 C~SRke~E~LAe~L~~-------~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPk 759 (1195)
T PLN03137 687 CLSRMDCEKVAERLQE-------FGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPK 759 (1195)
T ss_pred eCchhHHHHHHHHHHH-------CCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCC
Confidence 9999999999999986 567899999999999999999999999999999999999999999999999999999
Q ss_pred ceeccccccccccccccccHhhHHHhcccCCCC-CCcEEEEecChhhHh
Q 001615 641 ETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIHD 688 (1044)
Q Consensus 641 ~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~~~ 688 (1044)
|.++|+||+|||||. .+|.|+.||+..++.
T Consensus 760 ------------------SiEsYyQriGRAGRDG~~g~cILlys~~D~~ 790 (1195)
T PLN03137 760 ------------------SIEGYHQECGRAGRDGQRSSCVLYYSYSDYI 790 (1195)
T ss_pred ------------------CHHHHHhhhcccCCCCCCceEEEEecHHHHH
Confidence 555999999999999 789999999987664
No 49
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-35 Score=310.62 Aligned_cols=341 Identities=20% Similarity=0.238 Sum_probs=254.3
Q ss_pred CCCchHHHhHHHHHHHHHHHhccChhHHHHHHHhcCCCchHHHHHHHHHHHcC--CeEEEEecCCCchhchHHHHHHHHH
Q 001615 245 PQSDSAKERLNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAEN--QVLVVSGETGCGKTTQLPQFILEEE 322 (1044)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~--~~vii~a~TGSGKTt~~p~~il~~~ 322 (1044)
...+|++.+|.++|.+.+-..++..+ ..+|+.+++.++.+ +++|.++..|+|||++|.+-+|...
T Consensus 88 S~ksFeeL~LkPellkgly~M~F~kP-------------skIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrv 154 (477)
T KOG0332|consen 88 SAKSFEELRLKPELLKGLYAMKFQKP-------------SKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRV 154 (477)
T ss_pred ccccHHhhCCCHHHHhHHHHhccCCc-------------chHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhc
Confidence 45678888888877776644444433 45999999999875 6999999999999999999999876
Q ss_pred HhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCC---CCccEEEEchHHHHHHHhcCC--CCC
Q 001615 323 LSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRS---AQTRLLFCTTGVLLRQLVEDP--DLS 397 (1044)
Q Consensus 323 ~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~---~~~~I~v~T~g~Ll~~l~~~~--~L~ 397 (1044)
-. .-..|..+|+.|+|+||.|+-+.| .++|...+.++.|.++...... -..+|++.|||.+++++..-. .+.
T Consensus 155 d~--~~~~PQ~iCLaPtrELA~Q~~eVv-~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~ 231 (477)
T KOG0332|consen 155 DP--DVVVPQCICLAPTRELAPQTGEVV-EEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLE 231 (477)
T ss_pred Cc--cccCCCceeeCchHHHHHHHHHHH-HHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChh
Confidence 32 234578899999999999997655 6788777788899988763221 145799999999999998733 788
Q ss_pred ccceEEechhhhccchhH-HHHHHHHHHcccCCcccEEEcccCCChHH--HH-hhhCCCCeecCCCCc---cccceeehH
Q 001615 398 CVSHLLVDEIHERGMNED-FLLIILRDLLPRRPDLRLILMSATINADL--FS-KYFGNAPTVHIPGLT---FPVTDLFLE 470 (1044)
Q Consensus 398 ~~~~lIiDEaHeR~~~~d-~ll~~lk~~~~~~~~~qiilmSATl~~~~--~~-~~f~~~~~i~v~g~~---~pv~~~~l~ 470 (1044)
.+.++|+|||+ -++++. |--.-++......++.|+|++|||..... |+ ....++.++.+..+. .+|..+|+.
T Consensus 232 kikvfVlDEAD-~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~ 310 (477)
T KOG0332|consen 232 KIKVFVLDEAD-VMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVL 310 (477)
T ss_pred hceEEEecchh-hhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheee
Confidence 99999999999 556654 22222333333345899999999996553 44 333444444443222 334444432
Q ss_pred HHHHhhhcccCccccccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHh
Q 001615 471 DVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICR 550 (1044)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~ 550 (1044)
...+ +-.-+++..|..
T Consensus 311 C~~~----------------------------------------------------------------~~K~~~l~~lyg 326 (477)
T KOG0332|consen 311 CACR----------------------------------------------------------------DDKYQALVNLYG 326 (477)
T ss_pred ccch----------------------------------------------------------------hhHHHHHHHHHh
Confidence 1000 001123333333
Q ss_pred ccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCe
Q 001615 551 HEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDV 630 (1044)
Q Consensus 551 ~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V 630 (1044)
...-|..+|||.|++.+..++..|.. .+..|..+||+|..++|..+.+.|+.|.-||||+|||.+||||++-|
T Consensus 327 ~~tigqsiIFc~tk~ta~~l~~~m~~-------~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qV 399 (477)
T KOG0332|consen 327 LLTIGQSIIFCHTKATAMWLYEEMRA-------EGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQV 399 (477)
T ss_pred hhhhhheEEEEeehhhHHHHHHHHHh-------cCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceE
Confidence 33457889999999999999999987 67889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC-CCcEEEEecChh
Q 001615 631 VYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRI 685 (1044)
Q Consensus 631 ~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~ 685 (1044)
.+||||++|-... .. -..+.|+||+|||||. +.|.+|.|....
T Consensus 400 s~VvNydlP~~~~--~~----------pD~etYlHRiGRtGRFGkkG~a~n~v~~~ 443 (477)
T KOG0332|consen 400 SVVVNYDLPVKYT--GE----------PDYETYLHRIGRTGRFGKKGLAINLVDDK 443 (477)
T ss_pred EEEEecCCccccC--CC----------CCHHHHHHHhcccccccccceEEEeeccc
Confidence 9999999996422 11 1345899999999999 889999988654
No 50
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.5e-36 Score=352.98 Aligned_cols=339 Identities=19% Similarity=0.245 Sum_probs=256.6
Q ss_pred HHHHhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhcc---CCCCcEEEEEc
Q 001615 261 RQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSL---RGADCNIICTQ 337 (1044)
Q Consensus 261 ~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~---~~~~~~ilv~~ 337 (1044)
.|.....+...-..++.-..-+++++|.++||+|++|++||.+|.||||||.+|.+|++.+...+. .+.+|..|+++
T Consensus 366 sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~a 445 (997)
T KOG0334|consen 366 SWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILA 445 (997)
T ss_pred hHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEc
Confidence 344444455555555555556888999999999999999999999999999999999997765442 35678999999
Q ss_pred ccHHHHHHHHHHHHHHhCCCCCcEE--EEE---E-eccccCCCCccEEEEchHHHHHHHhcCC----CCCccceEEechh
Q 001615 338 PRRISAISVAARVSSERGENLGETV--GYQ---I-RLESKRSAQTRLLFCTTGVLLRQLVEDP----DLSCVSHLLVDEI 407 (1044)
Q Consensus 338 P~r~la~qva~rv~~~~~~~~g~~v--gy~---i-r~~~~~~~~~~I~v~T~g~Ll~~l~~~~----~L~~~~~lIiDEa 407 (1044)
|||+||.||.+.+.++... +|..+ -|+ + .+......++.|+|||||++++.+..+. .|.++++||+|||
T Consensus 446 Ptrela~QI~r~~~kf~k~-l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~dea 524 (997)
T KOG0334|consen 446 PTRELAMQIHREVRKFLKL-LGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEA 524 (997)
T ss_pred CCHHHHHHHHHHHHHHHhh-cCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechh
Confidence 9999999999999887654 44433 222 1 1112234579999999999999987654 6788889999999
Q ss_pred hhccchhHHHHHHHHHHcccCCcccEEEcccCCChHH--HHhhhCCCCe-ecCCCCccccceeehHHHHHhhhcccCccc
Q 001615 408 HERGMNEDFLLIILRDLLPRRPDLRLILMSATINADL--FSKYFGNAPT-VHIPGLTFPVTDLFLEDVLEKTRYKMNSKL 484 (1044)
Q Consensus 408 HeR~~~~d~ll~~lk~~~~~~~~~qiilmSATl~~~~--~~~~f~~~~~-i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~ 484 (1044)
| |++++.|.+++.+.+...+|+.|++++|||++... ++.-....|+ +.+.++..- ..++
T Consensus 525 D-rmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV-----~k~V------------ 586 (997)
T KOG0334|consen 525 D-RMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVV-----CKEV------------ 586 (997)
T ss_pred h-hhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeE-----eccc------------
Confidence 9 99999999999998888999999999999998773 2211111332 122221100 0000
Q ss_pred cccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCH
Q 001615 485 DSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGW 564 (1044)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~ 564 (1044)
.+ .+.- -.+..+.+..++..|......+++||||...
T Consensus 587 ---~q-----------------~v~V-----------------------~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~q 623 (997)
T KOG0334|consen 587 ---TQ-----------------VVRV-----------------------CAIENEKFLKLLELLGERYEDGKTIIFVDKQ 623 (997)
T ss_pred ---eE-----------------EEEE-----------------------ecCchHHHHHHHHHHHHHhhcCCEEEEEcCc
Confidence 00 0000 0000111334444444445589999999999
Q ss_pred HHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceec
Q 001615 565 NDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSY 644 (1044)
Q Consensus 565 ~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~y 644 (1044)
..++.|.+.|.. .++.+..+||+.++.+|..++..|+++..++||||+++++|+|+.++..||||++|..-.
T Consensus 624 e~~d~l~~~L~~-------ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~e- 695 (997)
T KOG0334|consen 624 EKADALLRDLQK-------AGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYE- 695 (997)
T ss_pred hHHHHHHHHHHh-------cCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHH-
Confidence 999999999986 567777799999999999999999999999999999999999999999999999999544
Q ss_pred cccccccccccccccHhhHHHhcccCCCC-CCcEEEEecChhh
Q 001615 645 DALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (1044)
Q Consensus 645 d~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~ 686 (1044)
.|+||.|||||+ +.|.||.|.++++
T Consensus 696 -----------------dyvhR~gRTgragrkg~AvtFi~p~q 721 (997)
T KOG0334|consen 696 -----------------DYVHRVGRTGRAGRKGAAVTFITPDQ 721 (997)
T ss_pred -----------------HHHHHhcccccCCccceeEEEeChHH
Confidence 899999999999 7899999998743
No 51
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.3e-34 Score=351.36 Aligned_cols=307 Identities=19% Similarity=0.217 Sum_probs=216.8
Q ss_pred CchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcE
Q 001615 282 PAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGET 361 (1044)
Q Consensus 282 pi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~ 361 (1044)
..+++|.++++++++++++++++|||||||+++.++++.. ...+||+.|+++|+.|+.+.+.. .+......
T Consensus 25 ~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~--------~g~tlVisPl~sL~~dqv~~l~~-~gi~~~~~ 95 (607)
T PRK11057 25 QFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL--------DGLTLVVSPLISLMKDQVDQLLA-NGVAAACL 95 (607)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc--------CCCEEEEecHHHHHHHHHHHHHH-cCCcEEEE
Confidence 4567999999999999999999999999999888887753 23688999999999998887764 33221111
Q ss_pred EEEEEe------ccccCCCCccEEEEchHHHHHH-HhcCCCCCccceEEechhhhccc-hhHHHHH--HHHHHcccCCcc
Q 001615 362 VGYQIR------LESKRSAQTRLLFCTTGVLLRQ-LVEDPDLSCVSHLLVDEIHERGM-NEDFLLI--ILRDLLPRRPDL 431 (1044)
Q Consensus 362 vgy~ir------~~~~~~~~~~I~v~T~g~Ll~~-l~~~~~L~~~~~lIiDEaHeR~~-~~d~ll~--~lk~~~~~~~~~ 431 (1044)
.+.... .........+|+|+||++|+.. +.......++++|||||||+..- ..||... .+..+....|+.
T Consensus 96 ~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~ 175 (607)
T PRK11057 96 NSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTL 175 (607)
T ss_pred cCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCC
Confidence 010000 0111233578999999998742 22222345789999999996431 1233322 233444556789
Q ss_pred cEEEcccCCChHHHH---hhhC-CCCeecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhh
Q 001615 432 RLILMSATINADLFS---KYFG-NAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTAL 507 (1044)
Q Consensus 432 qiilmSATl~~~~~~---~~f~-~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (1044)
++++||||++..... +.++ ..|.+.+.....|. ..| ... .+
T Consensus 176 ~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~n-l~~----------~v~-----------------~~------- 220 (607)
T PRK11057 176 PFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPN-IRY----------TLV-----------------EK------- 220 (607)
T ss_pred cEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCc-cee----------eee-----------------ec-------
Confidence 999999999876432 2222 12222221111000 000 000 00
Q ss_pred hhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeE
Q 001615 508 FEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFL 587 (1044)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~ 587 (1044)
...+..++..+. ...++++||||+++++++.+++.|.. .++.
T Consensus 221 ------------------------------~~~~~~l~~~l~-~~~~~~~IIFc~tr~~~e~la~~L~~-------~g~~ 262 (607)
T PRK11057 221 ------------------------------FKPLDQLMRYVQ-EQRGKSGIIYCNSRAKVEDTAARLQS-------RGIS 262 (607)
T ss_pred ------------------------------cchHHHHHHHHH-hcCCCCEEEEECcHHHHHHHHHHHHh-------CCCC
Confidence 000122233332 34567899999999999999999987 4677
Q ss_pred EEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhc
Q 001615 588 VLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRR 667 (1044)
Q Consensus 588 i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~ 667 (1044)
+.++||+|++++|.++++.|+.|..+|||||+++++|||+|+|++||++++|+ |.++|+||+
T Consensus 263 v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~------------------s~~~y~Qr~ 324 (607)
T PRK11057 263 AAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPR------------------NIESYYQET 324 (607)
T ss_pred EEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCC------------------CHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998 566999999
Q ss_pred ccCCCC-CCcEEEEecChhhHh
Q 001615 668 GRAGRV-QPGVCYKLYPRIIHD 688 (1044)
Q Consensus 668 GRAGR~-~~G~c~~L~t~~~~~ 688 (1044)
|||||. .+|.|+.||+..+..
T Consensus 325 GRaGR~G~~~~~ill~~~~d~~ 346 (607)
T PRK11057 325 GRAGRDGLPAEAMLFYDPADMA 346 (607)
T ss_pred hhccCCCCCceEEEEeCHHHHH
Confidence 999999 689999999987654
No 52
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-34 Score=312.64 Aligned_cols=331 Identities=18% Similarity=0.238 Sum_probs=229.0
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHc---------CCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHH
Q 001615 273 AMLSFREKLPAFKMKAEFLKAVAE---------NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISA 343 (1044)
Q Consensus 273 ~~~~~r~~lpi~~~Q~~~i~~i~~---------~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la 343 (1044)
.++........+|+|..+++.++. .+|+.|.||||||||++|.+||++.+..+. -...++||++|+|+||
T Consensus 150 q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~-v~~LRavVivPtr~L~ 228 (620)
T KOG0350|consen 150 QLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP-VKRLRAVVIVPTRELA 228 (620)
T ss_pred HHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC-ccceEEEEEeeHHHHH
Confidence 456666777888999999999842 679999999999999999999999876542 2235899999999999
Q ss_pred HHHHHHHHHHhCCCCCcEEEEEEe-----ccc----cCC--CCccEEEEchHHHHHHHhcCC--CCCccceEEechhhhc
Q 001615 344 ISVAARVSSERGENLGETVGYQIR-----LES----KRS--AQTRLLFCTTGVLLRQLVEDP--DLSCVSHLLVDEIHER 410 (1044)
Q Consensus 344 ~qva~rv~~~~~~~~g~~vgy~ir-----~~~----~~~--~~~~I~v~T~g~Ll~~l~~~~--~L~~~~~lIiDEaHeR 410 (1044)
.|++..+.+. ....|..|+.... .+. ... ...+|+|+|||+|.++|.+.+ .|+++.++|||||| |
T Consensus 229 ~QV~~~f~~~-~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEAD-R 306 (620)
T KOG0350|consen 229 LQVYDTFKRL-NSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEAD-R 306 (620)
T ss_pred HHHHHHHHHh-ccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHH-H
Confidence 9999887654 4445555653321 111 111 145899999999999998765 89999999999999 6
Q ss_pred cchhHH---HHHHHHHH------------cc-------------------cCCcccEEEcccCC--ChHHHHhhhCCCC-
Q 001615 411 GMNEDF---LLIILRDL------------LP-------------------RRPDLRLILMSATI--NADLFSKYFGNAP- 453 (1044)
Q Consensus 411 ~~~~d~---ll~~lk~~------------~~-------------------~~~~~qiilmSATl--~~~~~~~~f~~~~- 453 (1044)
.++.-| +..++..+ +. ..+.+.-+.+|||+ ++..+.++=-..|
T Consensus 307 ll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Pr 386 (620)
T KOG0350|consen 307 LLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPR 386 (620)
T ss_pred HHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCc
Confidence 655433 22221111 11 12334456667776 4455554432222
Q ss_pred eecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhh
Q 001615 454 TVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSA 533 (1044)
Q Consensus 454 ~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1044)
++.+.+. ... +|.... .+.+..-.
T Consensus 387 l~~v~~~---~~~----------ryslp~--------------------~l~~~~vv----------------------- 410 (620)
T KOG0350|consen 387 LFHVSKP---LIG----------RYSLPS--------------------SLSHRLVV----------------------- 410 (620)
T ss_pred eEEeecc---cce----------eeecCh--------------------hhhhceee-----------------------
Confidence 3322211 000 111100 00000000
Q ss_pred hhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHH-ccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCc
Q 001615 534 EQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIK-VNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKR 612 (1044)
Q Consensus 534 ~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~-~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~ 612 (1044)
.+.....-.+.++.....-.++|+|+++...+.+++..|. ... ...+.+-.+.|++....|.+.++.|..|.+
T Consensus 411 --~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~----~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i 484 (620)
T KOG0350|consen 411 --TEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFC----SDNFKVSEFTGQLNGKRRYKMLEKFAKGDI 484 (620)
T ss_pred --cccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhc----cccchhhhhhhhhhHHHHHHHHHHHhcCCc
Confidence 0000011123334444556789999999999999999987 211 134556668999999999999999999999
Q ss_pred EEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC-CCcEEEEecChhh
Q 001615 613 KIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (1044)
Q Consensus 613 kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~ 686 (1044)
.||||||+++||||+.||+.||||++|.... .|+||+||++|+ +.|.||.|.+++.
T Consensus 485 ~vLIcSD~laRGiDv~~v~~VINYd~P~~~k------------------tyVHR~GRTARAgq~G~a~tll~~~~ 541 (620)
T KOG0350|consen 485 NVLICSDALARGIDVNDVDNVINYDPPASDK------------------TYVHRAGRTARAGQDGYAITLLDKHE 541 (620)
T ss_pred eEEEehhhhhcCCcccccceEeecCCCchhh------------------HHHHhhcccccccCCceEEEeecccc
Confidence 9999999999999999999999999998544 999999999999 8899999998754
No 53
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-34 Score=306.53 Aligned_cols=340 Identities=18% Similarity=0.170 Sum_probs=245.9
Q ss_pred HHHHhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhcc----CCCCcEEEEE
Q 001615 261 RQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSL----RGADCNIICT 336 (1044)
Q Consensus 261 ~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~----~~~~~~ilv~ 336 (1044)
.|+.+..++++.+.+..-+.--++.+|+.+|+.+++|+|++.-|.||||||.++++|+++.++... ...++..+++
T Consensus 20 tFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iL 99 (569)
T KOG0346|consen 20 TFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVIL 99 (569)
T ss_pred cHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEE
Confidence 456666777777777777777778899999999999999999999999999999999999987643 2245678889
Q ss_pred cccHHHHHHHHHHHHHHh---CCCCC-cEEEEEEec---cccCCCCccEEEEchHHHHHHHhcCC--CCCccceEEechh
Q 001615 337 QPRRISAISVAARVSSER---GENLG-ETVGYQIRL---ESKRSAQTRLLFCTTGVLLRQLVEDP--DLSCVSHLLVDEI 407 (1044)
Q Consensus 337 ~P~r~la~qva~rv~~~~---~~~~g-~~vgy~ir~---~~~~~~~~~I~v~T~g~Ll~~l~~~~--~L~~~~~lIiDEa 407 (1044)
+|||+||.|++..+.+.. ...+- ..+...+.. ........+|+|+||+.|++++..+. .++.++++|+|||
T Consensus 100 vPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEA 179 (569)
T KOG0346|consen 100 VPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEA 179 (569)
T ss_pred echHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechh
Confidence 999999999998776542 11110 000100000 01223568999999999999999987 6899999999999
Q ss_pred hhccchhHHHHHHHHHHcccCCcccEEEcccCCChH--HHHhhhCCCCee-cCCCCccccceeehHHHHHhhhcccCccc
Q 001615 408 HERGMNEDFLLIILRDLLPRRPDLRLILMSATINAD--LFSKYFGNAPTV-HIPGLTFPVTDLFLEDVLEKTRYKMNSKL 484 (1044)
Q Consensus 408 HeR~~~~d~ll~~lk~~~~~~~~~qiilmSATl~~~--~~~~~f~~~~~i-~v~g~~~pv~~~~l~~~~~~~~~~~~~~~ 484 (1044)
| -.+.-++...+.+......+..|.++||||++.+ .+.+.|-..|++ .......|.... .+.|.+.
T Consensus 180 D-LllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dq-------L~Qy~v~--- 248 (569)
T KOG0346|consen 180 D-LLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQ-------LTQYQVK--- 248 (569)
T ss_pred h-hhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCccc-------ceEEEEE---
Confidence 9 4444555555544444566788999999999666 466777655544 322222221000 0000000
Q ss_pred cccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCH
Q 001615 485 DSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGW 564 (1044)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~ 564 (1044)
.+..|.+. ++..++.. .--.|++|||+++.
T Consensus 249 -------------cse~DKfl----------------------------------llyallKL---~LI~gKsliFVNtI 278 (569)
T KOG0346|consen 249 -------------CSEEDKFL----------------------------------LLYALLKL---RLIRGKSLIFVNTI 278 (569)
T ss_pred -------------eccchhHH----------------------------------HHHHHHHH---HHhcCceEEEEech
Confidence 00011110 11112111 12358999999999
Q ss_pred HHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeec-------------------------
Q 001615 565 NDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATN------------------------- 619 (1044)
Q Consensus 565 ~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTn------------------------- 619 (1044)
+.+.++.-.|.. -++..+.|.|.||..-|.-|++.|..|...||||||
T Consensus 279 dr~YrLkLfLeq-------FGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndk 351 (569)
T KOG0346|consen 279 DRCYRLKLFLEQ-------FGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDK 351 (569)
T ss_pred hhhHHHHHHHHH-------hCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCcc
Confidence 999999888876 456677799999999999999999999999999999
Q ss_pred ----------ccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC-CCcEEEEecChhh
Q 001615 620 ----------IAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (1044)
Q Consensus 620 ----------iae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~ 686 (1044)
-.+||||+..|..|||||+|.+.. +|+||+|||+|. .+|.+..|.....
T Consensus 352 kskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~------------------sYIHRvGRTaRg~n~GtalSfv~P~e 411 (569)
T KOG0346|consen 352 KSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVT------------------SYIHRVGRTARGNNKGTALSFVSPKE 411 (569)
T ss_pred ccccccCchhchhccccchheeeeeecCCCCchH------------------HHHHhccccccCCCCCceEEEecchH
Confidence 236899999999999999999655 999999999999 8999999987643
No 54
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=8e-33 Score=335.70 Aligned_cols=428 Identities=20% Similarity=0.223 Sum_probs=281.6
Q ss_pred CchHHHHHHHHH-HHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHH--HHhCCCC
Q 001615 282 PAFKMKAEFLKA-VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVS--SERGENL 358 (1044)
Q Consensus 282 pi~~~Q~~~i~~-i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~--~~~~~~~ 358 (1044)
-+++.|++.+.. +.+++|++||+|||||||..+.+.|+..+... +.++|+++|+|+||.+.++++. +.+|..+
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----~~k~vYivPlkALa~Ek~~~~~~~~~~GirV 106 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----GGKVVYIVPLKALAEEKYEEFSRLEELGIRV 106 (766)
T ss_pred HhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc----CCcEEEEeChHHHHHHHHHHhhhHHhcCCEE
Confidence 344556555555 55679999999999999999999999988653 4589999999999999999998 4455444
Q ss_pred CcEEEEEEeccccCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhh-----ccchhHHHHHHHHHHcccCCccc
Q 001615 359 GETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHE-----RGMNEDFLLIILRDLLPRRPDLR 432 (1044)
Q Consensus 359 g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHe-----R~~~~d~ll~~lk~~~~~~~~~q 432 (1044)
+...|-.- .....-.+++|+|+||+.+-..+++.+ .+..+++|||||+|- |+.-.+ .++.++....+..|
T Consensus 107 ~~~TgD~~-~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE---~iv~r~~~~~~~~r 182 (766)
T COG1204 107 GISTGDYD-LDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLE---SIVARMRRLNELIR 182 (766)
T ss_pred EEecCCcc-cchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceeh---hHHHHHHhhCcceE
Confidence 44433211 111223578999999999999888877 788999999999993 554444 44445555566689
Q ss_pred EEEcccCC-ChHHHHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhhhhcc
Q 001615 433 LILMSATI-NADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDV 511 (1044)
Q Consensus 433 iilmSATl-~~~~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (1044)
+|++|||+ |.+.+++|++..++ ....+..|....-... . ......... + ..
T Consensus 183 ivgLSATlpN~~evA~wL~a~~~-~~~~rp~~l~~~v~~~---~-------~~~~~~~~~--------k------~~--- 234 (766)
T COG1204 183 IVGLSATLPNAEEVADWLNAKLV-ESDWRPVPLRRGVPYV---G-------AFLGADGKK--------K------TW--- 234 (766)
T ss_pred EEEEeeecCCHHHHHHHhCCccc-ccCCCCcccccCCccc---e-------EEEEecCcc--------c------cc---
Confidence 99999998 77889999986655 2222222211100000 0 000000000 0 00
Q ss_pred cccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHc---c-----------
Q 001615 512 DIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKV---N----------- 577 (1044)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~---~----------- 577 (1044)
....+ ++...++...+ ..++.+||||++++.+...+..|.. .
T Consensus 235 ---------------------~~~~~-~~~~~~v~~~~--~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~ 290 (766)
T COG1204 235 ---------------------PLLID-NLALELVLESL--AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLD 290 (766)
T ss_pred ---------------------cccch-HHHHHHHHHHH--hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhcc
Confidence 00000 11112222222 4578999999999999999998873 0
Q ss_pred ----ccCC------------CCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcc
Q 001615 578 ----KFLG------------DPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKE 641 (1044)
Q Consensus 578 ----~~~~------------~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~ 641 (1044)
.... ......+..||++|+.++|..+.+.|+.|++|||+||++++.|+|.|.-++||- ..
T Consensus 291 ~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk----~~ 366 (766)
T COG1204 291 EGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIK----DT 366 (766)
T ss_pred ccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEe----ee
Confidence 0110 011346888999999999999999999999999999999999999997777774 34
Q ss_pred eeccccccccccccccccHhhHHHhcccCCCC---CCcEEEEec-Chhh---HhhcCCCCCCccccC------ChHHHHH
Q 001615 642 TSYDALNKLACLLPSWISKASAHQRRGRAGRV---QPGVCYKLY-PRII---HDAMLPYQLPEILRT------PLQELCL 708 (1044)
Q Consensus 642 ~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~---~~G~c~~L~-t~~~---~~~l~~~~~pei~r~------~L~~~~L 708 (1044)
..||+..+ .+.|++-+++|++|||||. .-|..+.+- +.+. +........||.... .+...++
T Consensus 367 ~~y~~~~g-----~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~ 441 (766)
T COG1204 367 RRYDPKGG-----IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFLL 441 (766)
T ss_pred EEEcCCCC-----eEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhcccccchheEE
Confidence 55776332 4567888999999999998 346555555 2222 223444556654111 1222222
Q ss_pred HHHhcc----CCchhhhhhcCCCCCC-------HHHHHHHHHHHHHcC-CCCCC---CCcCccccccccccCChhhHHHH
Q 001615 709 HIKSLQ----LGTVGSFLSKALQPPD-------PLAVQNAIELLKTIG-ALDDM---ENLTPLGRHLCTLPVDPNIGKML 773 (1044)
Q Consensus 709 ~~k~l~----~~~~~~fl~~~~~pP~-------~~~i~~al~~L~~lg-al~~~---~~lT~lG~~l~~lpl~p~~~k~l 773 (1044)
.+.+.+ +.....|+..+.-.|. ...+.++++.|.+.+ +++.. -.-|++|+.++++.++|..++.+
T Consensus 442 ~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~~~ate~g~~~s~~yi~~~sa~~~ 521 (766)
T COG1204 442 GVISVGDAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENGLILDADWEALHATELGKLVSRLYIDPESAKIF 521 (766)
T ss_pred EEEeccchhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhccceeeccccccchhHHHHHhhhccCCHHHHHHH
Confidence 222111 1123445444444443 456888999999986 55543 36899999999999999999988
Q ss_pred HHhhh
Q 001615 774 LMGAI 778 (1044)
Q Consensus 774 l~~~~ 778 (1044)
.....
T Consensus 522 ~~~l~ 526 (766)
T COG1204 522 RDLLA 526 (766)
T ss_pred HHHHH
Confidence 77643
No 55
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-33 Score=312.26 Aligned_cols=356 Identities=17% Similarity=0.179 Sum_probs=245.7
Q ss_pred CccccccccCCCCCCCchHHHhHHHHHHHHHHHhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchh
Q 001615 232 PKLSVKVANTISPPQSDSAKERLNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKT 311 (1044)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKT 311 (1044)
..+|+++|.++.+..+...+-..+..+.+++..+.+. -++++|.++++.+.++++++.|||||||||
T Consensus 121 ~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~-------------~Pt~iq~~aipvfl~~r~~lAcapTGsgKt 187 (593)
T KOG0344|consen 121 NVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFD-------------EPTPIQKQAIPVFLEKRDVLACAPTGSGKT 187 (593)
T ss_pred eccCCCCCCccccccccchhhhhcHHHHHhHhhCCCC-------------CCCcccchhhhhhhcccceEEeccCCCcch
Confidence 4577877763332222222233334444444444443 345689999999999999999999999999
Q ss_pred chHHHHHHHHHHhccC---CCCcEEEEEcccHHHHHHHHHHHHHHhCC--CCCcEEEEEE------eccccCCCCccEEE
Q 001615 312 TQLPQFILEEELSSLR---GADCNIICTQPRRISAISVAARVSSERGE--NLGETVGYQI------RLESKRSAQTRLLF 380 (1044)
Q Consensus 312 t~~p~~il~~~~~~~~---~~~~~ilv~~P~r~la~qva~rv~~~~~~--~~g~~vgy~i------r~~~~~~~~~~I~v 380 (1044)
+++.+|+++++..... ..+-+++|+.|+|+||.|++..+.+.... .-....+... +.........+|++
T Consensus 188 laf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili 267 (593)
T KOG0344|consen 188 LAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILI 267 (593)
T ss_pred hhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHh
Confidence 9999999998865432 34568999999999999999888765411 1111111110 00011123678999
Q ss_pred EchHHHHHHHhcCC---CCCccceEEechhhhccchh-HHHHHHHHHHcc-cCCcccEEEcccCCChHH--HHhhhCCCC
Q 001615 381 CTTGVLLRQLVEDP---DLSCVSHLLVDEIHERGMNE-DFLLIILRDLLP-RRPDLRLILMSATINADL--FSKYFGNAP 453 (1044)
Q Consensus 381 ~T~g~Ll~~l~~~~---~L~~~~~lIiDEaHeR~~~~-d~ll~~lk~~~~-~~~~~qiilmSATl~~~~--~~~~f~~~~ 453 (1044)
.||-++...+..++ .++.+.++|+||+| +-+.- .|..++-..+.. ..|++++=+||||++.+. ++......+
T Consensus 268 ~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD-~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~ 346 (593)
T KOG0344|consen 268 STPMRIVGLLGLGKLNIDLSKVEWLVVDEAD-LLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDL 346 (593)
T ss_pred cCHHHHHHHhcCCCccchhheeeeEeechHH-hhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccc
Confidence 99999999998876 79999999999999 54444 455554443322 348899999999986543 333222111
Q ss_pred e-ecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhh
Q 001615 454 T-VHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWS 532 (1044)
Q Consensus 454 ~-i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (1044)
+ +.|.-+... .+.+.+...+ .+. .
T Consensus 347 ~~vivg~~~sa-----~~~V~QelvF---------~gs------e----------------------------------- 371 (593)
T KOG0344|consen 347 KRVIVGLRNSA-----NETVDQELVF---------CGS------E----------------------------------- 371 (593)
T ss_pred eeEEEecchhH-----hhhhhhhhee---------eec------c-----------------------------------
Confidence 1 111100000 0000000000 000 0
Q ss_pred hhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCc
Q 001615 533 AEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKR 612 (1044)
Q Consensus 533 ~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~ 612 (1044)
.-..-.+..+....-..++|||+.+.+.+.+|...|.. ..+..|..+||..++.+|+++++.|+.|++
T Consensus 372 ------~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~------~~~i~v~vIh~e~~~~qrde~~~~FR~g~I 439 (593)
T KOG0344|consen 372 ------KGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEI------YDNINVDVIHGERSQKQRDETMERFRIGKI 439 (593)
T ss_pred ------hhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhh------ccCcceeeEecccchhHHHHHHHHHhccCe
Confidence 00112333444455567899999999999999999952 157789999999999999999999999999
Q ss_pred EEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC-CCcEEEEecChhh
Q 001615 613 KIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (1044)
Q Consensus 613 kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~ 686 (1044)
.|++||++++||||+-+|+.|||+|+|. |.-+|+||+||+||+ +.|.+|.||+..+
T Consensus 440 wvLicTdll~RGiDf~gvn~VInyD~p~------------------s~~syihrIGRtgRag~~g~Aitfytd~d 496 (593)
T KOG0344|consen 440 WVLICTDLLARGIDFKGVNLVINYDFPQ------------------SDLSYIHRIGRTGRAGRSGKAITFYTDQD 496 (593)
T ss_pred eEEEehhhhhccccccCcceEEecCCCc------------------hhHHHHHHhhccCCCCCCcceEEEecccc
Confidence 9999999999999999999999999999 444999999999999 8899999999844
No 56
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=8.3e-33 Score=336.71 Aligned_cols=303 Identities=18% Similarity=0.193 Sum_probs=215.1
Q ss_pred CchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcE
Q 001615 282 PAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGET 361 (1044)
Q Consensus 282 pi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~ 361 (1044)
..+++|.++++++++++++++++|||+|||+++.++++.. ...++|+.|+++|+.|..+++.. ++. .
T Consensus 13 ~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~--------~g~~lVisPl~sL~~dq~~~l~~-~gi----~ 79 (591)
T TIGR01389 13 DFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL--------KGLTVVISPLISLMKDQVDQLRA-AGV----A 79 (591)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHH-cCC----c
Confidence 4567999999999999999999999999999988887742 23678889999999998887765 333 2
Q ss_pred EEEE---Eecc-------ccCCCCccEEEEchHHHHHHHhcC-CCCCccceEEechhhhccc-hhHHHHHH--HHHHccc
Q 001615 362 VGYQ---IRLE-------SKRSAQTRLLFCTTGVLLRQLVED-PDLSCVSHLLVDEIHERGM-NEDFLLII--LRDLLPR 427 (1044)
Q Consensus 362 vgy~---ir~~-------~~~~~~~~I~v~T~g~Ll~~l~~~-~~L~~~~~lIiDEaHeR~~-~~d~ll~~--lk~~~~~ 427 (1044)
+.+- .... .......+|+|+||++|....... ....++++|||||||+.+- ..||-..+ +..+...
T Consensus 80 ~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~ 159 (591)
T TIGR01389 80 AAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAER 159 (591)
T ss_pred EEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHh
Confidence 3322 1111 112345789999999986432222 2456899999999996431 23443332 2333444
Q ss_pred CCcccEEEcccCCChHHH---HhhhCC-CCeecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccchhh
Q 001615 428 RPDLRLILMSATINADLF---SKYFGN-APTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDH 503 (1044)
Q Consensus 428 ~~~~qiilmSATl~~~~~---~~~f~~-~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (1044)
.|+..+|++|||++.... ..+++- .+...+.+...| ...|. .. ...
T Consensus 160 ~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-nl~~~----------v~-----------------~~~-- 209 (591)
T TIGR01389 160 FPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRP-NLRFS----------VV-----------------KKN-- 209 (591)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCC-CcEEE----------EE-----------------eCC--
Confidence 566679999999977643 344431 111111100000 00000 00 000
Q ss_pred hhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCC
Q 001615 504 LTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDP 583 (1044)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~ 583 (1044)
+....++..+. ...++++||||+++++++.+++.|..
T Consensus 210 -----------------------------------~~~~~l~~~l~-~~~~~~~IIf~~sr~~~e~la~~L~~------- 246 (591)
T TIGR01389 210 -----------------------------------NKQKFLLDYLK-KHRGQSGIIYASSRKKVEELAERLES------- 246 (591)
T ss_pred -----------------------------------CHHHHHHHHHH-hcCCCCEEEEECcHHHHHHHHHHHHh-------
Confidence 00111222232 23367899999999999999999986
Q ss_pred CCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhH
Q 001615 584 NKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASA 663 (1044)
Q Consensus 584 ~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~ 663 (1044)
.++.+.++||+|+.++|..+++.|..|..+|||||+++++|||+|+|++||++++|+ |.++|
T Consensus 247 ~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~------------------s~~~y 308 (591)
T TIGR01389 247 QGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPG------------------NLESY 308 (591)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCC------------------CHHHH
Confidence 467789999999999999999999999999999999999999999999999999999 55699
Q ss_pred HHhcccCCCC-CCcEEEEecChhhHh
Q 001615 664 HQRRGRAGRV-QPGVCYKLYPRIIHD 688 (1044)
Q Consensus 664 ~QR~GRAGR~-~~G~c~~L~t~~~~~ 688 (1044)
.||+|||||. .+|.|+.+|+..+..
T Consensus 309 ~Q~~GRaGR~G~~~~~il~~~~~d~~ 334 (591)
T TIGR01389 309 YQEAGRAGRDGLPAEAILLYSPADIA 334 (591)
T ss_pred hhhhccccCCCCCceEEEecCHHHHH
Confidence 9999999999 689999999987654
No 57
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.8e-32 Score=325.73 Aligned_cols=386 Identities=21% Similarity=0.211 Sum_probs=269.0
Q ss_pred hhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCC---CCcEEEEEcccHHHHHH
Q 001615 269 DSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRG---ADCNIICTQPRRISAIS 345 (1044)
Q Consensus 269 ~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~---~~~~ilv~~P~r~la~q 345 (1044)
+..++.++.+ .--+++.|.++++.|.+|++++|+||||||||.++.+++++.+...+.+ .+..+|++.|-|+|+..
T Consensus 10 ~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~D 88 (814)
T COG1201 10 PRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNND 88 (814)
T ss_pred HHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHH
Confidence 4445555555 5667889999999999999999999999999999999999999887422 34689999999999999
Q ss_pred HHHHHHHHhCCCCCcEE----EEEEecccc--CCCCccEEEEchHHHHHHHhcCC---CCCccceEEechhhh-----cc
Q 001615 346 VAARVSSERGENLGETV----GYQIRLESK--RSAQTRLLFCTTGVLLRQLVEDP---DLSCVSHLLVDEIHE-----RG 411 (1044)
Q Consensus 346 va~rv~~~~~~~~g~~v----gy~ir~~~~--~~~~~~I~v~T~g~Ll~~l~~~~---~L~~~~~lIiDEaHe-----R~ 411 (1044)
+-.++..- +...|..| |.....+.+ ...-.+|+++||+.|.-+|.... .|.++.+|||||+|+ |+
T Consensus 89 i~~rL~~~-~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG 167 (814)
T COG1201 89 IRRRLEEP-LRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRG 167 (814)
T ss_pred HHHHHHHH-HHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccc
Confidence 99887543 22444444 221111111 23457899999999998886643 799999999999996 77
Q ss_pred chhHHHHHHHHHHcccCCcccEEEcccCC-ChHHHHhhhCCC----CeecCCCC-ccccceeehHHHHHhhhcccCcccc
Q 001615 412 MNEDFLLIILRDLLPRRPDLRLILMSATI-NADLFSKYFGNA----PTVHIPGL-TFPVTDLFLEDVLEKTRYKMNSKLD 485 (1044)
Q Consensus 412 ~~~d~ll~~lk~~~~~~~~~qiilmSATl-~~~~~~~~f~~~----~~i~v~g~-~~pv~~~~l~~~~~~~~~~~~~~~~ 485 (1044)
...-+.+.-|+.+.. ++|.|++|||. +.+..++|+.+. .++.+.+. ...+.......-...
T Consensus 168 ~~Lsl~LeRL~~l~~---~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~---------- 234 (814)
T COG1201 168 VQLALSLERLRELAG---DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIY---------- 234 (814)
T ss_pred hhhhhhHHHHHhhCc---ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCcccc----------
Confidence 766666666666554 89999999999 777899998754 23333221 122221111100000
Q ss_pred ccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHH
Q 001615 486 SFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWN 565 (1044)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~ 565 (1044)
.+ .........+..+.++ ...+|||++|+.
T Consensus 235 ---------------~~---------------------------------~~~~~~~~~i~~~v~~--~~ttLIF~NTR~ 264 (814)
T COG1201 235 ---------------DE---------------------------------ELWAALYERIAELVKK--HRTTLIFTNTRS 264 (814)
T ss_pred ---------------cc---------------------------------chhHHHHHHHHHHHhh--cCcEEEEEeChH
Confidence 00 0000122233344432 348999999999
Q ss_pred HHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceecc
Q 001615 566 DISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYD 645 (1044)
Q Consensus 566 ~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd 645 (1044)
.++.++..|... ....+..|||+++.++|..+.++|++|..|++|||+.+|-||||.+|+.||+++-|+
T Consensus 265 ~aE~l~~~L~~~------~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~----- 333 (814)
T COG1201 265 GAERLAFRLKKL------GPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPK----- 333 (814)
T ss_pred HHHHHHHHHHHh------cCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcH-----
Confidence 999999999874 226789999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccHhhHHHhcccCCCC----CCcEEEEecChhhHh-------hc-CCCCCCccccCChHHHHHHHHhc
Q 001615 646 ALNKLACLLPSWISKASAHQRRGRAGRV----QPGVCYKLYPRIIHD-------AM-LPYQLPEILRTPLQELCLHIKSL 713 (1044)
Q Consensus 646 ~~~~~~~l~~~~iS~a~~~QR~GRAGR~----~~G~c~~L~t~~~~~-------~l-~~~~~pei~r~~L~~~~L~~k~l 713 (1044)
|.+...||+||+|+. ..|..|..--.+..+ .+ -....+++-..+|+-++-++-.+
T Consensus 334 -------------sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~ 400 (814)
T COG1201 334 -------------SVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGM 400 (814)
T ss_pred -------------HHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHH
Confidence 556999999999987 235444443111112 11 12235677778888777777554
Q ss_pred cCC---ch---hhhhhcC--CCCCCHHHHHHHHHHHHH
Q 001615 714 QLG---TV---GSFLSKA--LQPPDPLAVQNAIELLKT 743 (1044)
Q Consensus 714 ~~~---~~---~~fl~~~--~~pP~~~~i~~al~~L~~ 743 (1044)
-+. ++ -.++.++ ..--+.+.....++.|..
T Consensus 401 ~~~~~~~~~~~y~~vrraypy~~L~~e~f~~v~~~l~~ 438 (814)
T COG1201 401 ALEKVWEVEEAYRVVRRAYPYADLSREDFRLVLRYLAG 438 (814)
T ss_pred HhhCcCCHHHHHHHHHhccccccCCHHHHHHHHHHHhh
Confidence 322 12 2222111 111245667788888877
No 58
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=4.1e-32 Score=336.16 Aligned_cols=307 Identities=20% Similarity=0.237 Sum_probs=218.1
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHcC------CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHH
Q 001615 273 AMLSFREKLPAFKMKAEFLKAVAEN------QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISV 346 (1044)
Q Consensus 273 ~~~~~r~~lpi~~~Q~~~i~~i~~~------~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qv 346 (1044)
+.+...-...+++.|.++|+.+.++ .+.+++|+||||||.++..+++..+.. ++++++++||++||.|+
T Consensus 442 ~~~~~~~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~-----g~qvlvLvPT~~LA~Q~ 516 (926)
T TIGR00580 442 QEFEDSFPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD-----GKQVAVLVPTTLLAQQH 516 (926)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh-----CCeEEEEeCcHHHHHHH
Confidence 3333444456799999999999875 689999999999999999888877643 36899999999999999
Q ss_pred HHHHHHHhCCCCCcEEEEEEeccc---------c-CCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHH
Q 001615 347 AARVSSERGENLGETVGYQIRLES---------K-RSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDF 416 (1044)
Q Consensus 347 a~rv~~~~~~~~g~~vgy~ir~~~---------~-~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ 416 (1044)
++.+.+.+.. .+..++.-.++.. . .....+|+|+||.. +..+..+.++++|||||+|+.+...
T Consensus 517 ~~~f~~~~~~-~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l~~~v~f~~L~llVIDEahrfgv~~-- 589 (926)
T TIGR00580 517 FETFKERFAN-FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----LQKDVKFKDLGLLIIDEEQRFGVKQ-- 589 (926)
T ss_pred HHHHHHHhcc-CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----hhCCCCcccCCEEEeecccccchhH--
Confidence 9999876542 3333433222111 0 12357899999953 3344478999999999999533221
Q ss_pred HHHHHHHHcccCCcccEEEcccCCChHHHHhh-hC--CCCeecCC-CCccccceeehHHHHHhhhcccCccccccccccc
Q 001615 417 LLIILRDLLPRRPDLRLILMSATINADLFSKY-FG--NAPTVHIP-GLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSR 492 (1044)
Q Consensus 417 ll~~lk~~~~~~~~~qiilmSATl~~~~~~~~-f~--~~~~i~v~-g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 492 (1044)
...+....++.++++||||+.+..+... ++ +..++..+ ....|+..++.+
T Consensus 590 ----~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~---------------------- 643 (926)
T TIGR00580 590 ----KEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVME---------------------- 643 (926)
T ss_pred ----HHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEe----------------------
Confidence 1222234567899999999876654422 22 11222221 111222222110
Q ss_pred cccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHH-HHHHHHHhccCCCCEEEEeCCHHHHHHHH
Q 001615 493 RSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVE-STIEYICRHEGDGAILVFLTGWNDISKLL 571 (1044)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~-~~l~~i~~~~~~g~iLVFl~~~~~i~~l~ 571 (1044)
+. ...+. .+...+. .++.++||+++.++++.++
T Consensus 644 ---------------------------~~----------------~~~i~~~i~~el~---~g~qv~if~n~i~~~e~l~ 677 (926)
T TIGR00580 644 ---------------------------YD----------------PELVREAIRRELL---RGGQVFYVHNRIESIEKLA 677 (926)
T ss_pred ---------------------------cC----------------HHHHHHHHHHHHH---cCCeEEEEECCcHHHHHHH
Confidence 00 00011 1222222 3578999999999999999
Q ss_pred HHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceecccccccc
Q 001615 572 DQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLA 651 (1044)
Q Consensus 572 ~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~ 651 (1044)
+.|.... .++.+..+||+|++++|+++++.|++|+.+|||||+++|+|||||+|++||.++.+..
T Consensus 678 ~~L~~~~-----p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~---------- 742 (926)
T TIGR00580 678 TQLRELV-----PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKF---------- 742 (926)
T ss_pred HHHHHhC-----CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCC----------
Confidence 9998631 3578999999999999999999999999999999999999999999999998777651
Q ss_pred ccccccccHhhHHHhcccCCCC-CCcEEEEecChh
Q 001615 652 CLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRI 685 (1044)
Q Consensus 652 ~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~ 685 (1044)
+.++|.||+||+||. +.|.||.|++..
T Consensus 743 -------gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 743 -------GLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred -------CHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 334899999999999 789999999753
No 59
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.3e-32 Score=348.20 Aligned_cols=313 Identities=20% Similarity=0.234 Sum_probs=203.9
Q ss_pred EEecCCCchhchHHHHHHHHHHhcc--------CCCCcEEEEEcccHHHHHHHHHHHHHHh----------C-CCCCcEE
Q 001615 302 VSGETGCGKTTQLPQFILEEELSSL--------RGADCNIICTQPRRISAISVAARVSSER----------G-ENLGETV 362 (1044)
Q Consensus 302 i~a~TGSGKTt~~p~~il~~~~~~~--------~~~~~~ilv~~P~r~la~qva~rv~~~~----------~-~~~g~~v 362 (1044)
|+||||||||+++.+++++.++.+. ...++++||+.|+|+|+.|+.+++...+ + ...+..|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5899999999999999999987542 1235799999999999999998875421 1 1234444
Q ss_pred EEEEec---cc---cCCCCccEEEEchHHHHHHHhcCC--CCCccceEEechhhh-----ccchhHHHHHHHHHHcccCC
Q 001615 363 GYQIRL---ES---KRSAQTRLLFCTTGVLLRQLVEDP--DLSCVSHLLVDEIHE-----RGMNEDFLLIILRDLLPRRP 429 (1044)
Q Consensus 363 gy~ir~---~~---~~~~~~~I~v~T~g~Ll~~l~~~~--~L~~~~~lIiDEaHe-----R~~~~d~ll~~lk~~~~~~~ 429 (1044)
+..... .. .....++|+|+||+.|..+|.+.. .|+++++|||||+|+ |+......+.-++.++ ..
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~--~~ 158 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL--HT 158 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC--CC
Confidence 432211 11 122467999999999998876543 789999999999995 2322333333344443 34
Q ss_pred cccEEEcccCC-ChHHHHhhhCCC-CeecC-CC--Cccccceeeh-HHHHHhhhcccCccccccccccccccccccchhh
Q 001615 430 DLRLILMSATI-NADLFSKYFGNA-PTVHI-PG--LTFPVTDLFL-EDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDH 503 (1044)
Q Consensus 430 ~~qiilmSATl-~~~~~~~~f~~~-~~i~v-~g--~~~pv~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (1044)
+.|+|++|||+ |.+.+++|++.. ++..+ +. +..++..... .+. ..+. ..........
T Consensus 159 ~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~------------~~~~----~~~~~~~~~~- 221 (1490)
T PRK09751 159 SAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANM------------DDVS----SVASGTGEDS- 221 (1490)
T ss_pred CCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCch------------hhcc----cccccccccc-
Confidence 68999999999 566788999753 32212 11 1122221110 000 0000 0000000000
Q ss_pred hhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccC---
Q 001615 504 LTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFL--- 580 (1044)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~--- 580 (1044)
.... .. .+.......++..+. ...++|||++|++.++.++..|.+....
T Consensus 222 ----------------~~~r-~~--------~i~~~v~~~il~~i~---~~~stLVFvNSR~~AE~La~~L~~~~~~~~~ 273 (1490)
T PRK09751 222 ----------------HAGR-EG--------SIWPYIETGILDEVL---RHRSTIVFTNSRGLAEKLTARLNELYAARLQ 273 (1490)
T ss_pred ----------------chhh-hh--------hhhHHHHHHHHHHHh---cCCCEEEECCCHHHHHHHHHHHHHhhhhhcc
Confidence 0000 00 000000112222222 3468999999999999999999753100
Q ss_pred ----------------C-------CCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCC
Q 001615 581 ----------------G-------DPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCG 637 (1044)
Q Consensus 581 ----------------~-------~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g 637 (1044)
+ ....+.+..|||+|++++|..+++.|++|..+|||||+++|.||||++|++||++|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~g 353 (1490)
T PRK09751 274 RSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVA 353 (1490)
T ss_pred ccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeC
Confidence 0 00124478899999999999999999999999999999999999999999999999
Q ss_pred CCcceeccccccccccccccccHhhHHHhcccCCCCC--CcEEE
Q 001615 638 KAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQ--PGVCY 679 (1044)
Q Consensus 638 ~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~--~G~c~ 679 (1044)
.|+ |.++|+||+|||||.. .+.++
T Consensus 354 sP~------------------sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 354 TPL------------------SVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred CCC------------------CHHHHHHHhCCCCCCCCCccEEE
Confidence 998 6679999999999973 34455
No 60
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=6.6e-32 Score=324.35 Aligned_cols=347 Identities=16% Similarity=0.163 Sum_probs=206.5
Q ss_pred CCCchHHHHHHHHHHHcCC-eEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC-
Q 001615 280 KLPAFKMKAEFLKAVAENQ-VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN- 357 (1044)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~~-~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~- 357 (1044)
...++++|.++++.+++|+ ++++++|||||||.++..+++-. ........++++++|||+||.|+++.+.+.....
T Consensus 13 G~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~--~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~ 90 (844)
T TIGR02621 13 GYSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV--EIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLP 90 (844)
T ss_pred CCCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc--cccccccceEEEeCchHHHHHHHHHHHHHHHHHhc
Confidence 3448999999999999998 67778999999998776666632 1112222356668899999999998776543211
Q ss_pred ---------------------CCcEEE--EE-E---eccccCCCCccEEEEchHHHHHHHhc-C--------C----CCC
Q 001615 358 ---------------------LGETVG--YQ-I---RLESKRSAQTRLLFCTTGVLLRQLVE-D--------P----DLS 397 (1044)
Q Consensus 358 ---------------------~g~~vg--y~-i---r~~~~~~~~~~I~v~T~g~Ll~~l~~-~--------~----~L~ 397 (1044)
....+. |+ . ........+++|+|+|+.++.+.... + | .|+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~ 170 (844)
T TIGR02621 91 DVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLG 170 (844)
T ss_pred ccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhc
Confidence 011122 11 1 11112335789999996555433321 0 0 268
Q ss_pred ccceEEechhhhccchhHHHHHHHHHHcc--cCC---cccEEEcccCCChHH--HHhhhCCCC-eecCCCCccccceeeh
Q 001615 398 CVSHLLVDEIHERGMNEDFLLIILRDLLP--RRP---DLRLILMSATINADL--FSKYFGNAP-TVHIPGLTFPVTDLFL 469 (1044)
Q Consensus 398 ~~~~lIiDEaHeR~~~~d~ll~~lk~~~~--~~~---~~qiilmSATl~~~~--~~~~f~~~~-~i~v~g~~~pv~~~~l 469 (1044)
++++||||||| ++++|...+.+.+.. ..+ ++|+++||||++.+. +...|...+ .+.+........
T Consensus 171 ~v~~LVLDEAD---Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~---- 243 (844)
T TIGR02621 171 QDALIVHDEAH---LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAK---- 243 (844)
T ss_pred cceEEEEehhh---hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccccccccc----
Confidence 89999999999 445554443333321 122 379999999997653 333332221 111110000000
Q ss_pred HHHHHhhhcccCccccccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHH
Q 001615 470 EDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYIC 549 (1044)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~ 549 (1044)
.+..++. ... .. ....+...+..+.
T Consensus 244 ---------------------------------ki~q~v~----------v~~--e~----------Kl~~lv~~L~~ll 268 (844)
T TIGR02621 244 ---------------------------------KIVKLVP----------PSD--EK----------FLSTMVKELNLLM 268 (844)
T ss_pred ---------------------------------ceEEEEe----------cCh--HH----------HHHHHHHHHHHHH
Confidence 0000000 000 00 0000111222222
Q ss_pred hccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHH-----hhhCCCCC----CC-------cE
Q 001615 550 RHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQR-----EIFDRPPP----NK-------RK 613 (1044)
Q Consensus 550 ~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~-----~v~~~f~~----g~-------~k 613 (1044)
....+++||||+|+++++.+++.|... ++ ..+||+|++.+|. ++++.|++ |. .+
T Consensus 269 -~e~g~~vLVF~NTv~~Aq~L~~~L~~~-------g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ 338 (844)
T TIGR02621 269 -KDSGGAILVFCRTVKHVRKVFAKLPKE-------KF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTV 338 (844)
T ss_pred -hhCCCcEEEEECCHHHHHHHHHHHHhc-------CC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccce
Confidence 235678999999999999999999862 22 7899999999999 77888876 43 68
Q ss_pred EEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC-CC-cEEEEecChhhHh-hc
Q 001615 614 IVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QP-GVCYKLYPRIIHD-AM 690 (1044)
Q Consensus 614 IlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~-G~c~~L~t~~~~~-~l 690 (1044)
|||||+++|+||||+. ++||+...|. ++|+||+||+||. +. |..+.+++.+.-. .-
T Consensus 339 ILVATdVaerGLDId~-d~VI~d~aP~--------------------esyIQRiGRtgR~G~~~~~~i~vv~~~~~~~~~ 397 (844)
T TIGR02621 339 YLVCTSAGEVGVNISA-DHLVCDLAPF--------------------ESMQQRFGRVNRFGELQACQIAVVHLDLGKDQD 397 (844)
T ss_pred EEeccchhhhcccCCc-ceEEECCCCH--------------------HHHHHHhcccCCCCCCCCceEEEEeeccCCCcc
Confidence 9999999999999987 7777644332 3999999999998 32 3334444331111 10
Q ss_pred CCCCCCccccCChHHHHHHHHhccCCchhhh
Q 001615 691 LPYQLPEILRTPLQELCLHIKSLQLGTVGSF 721 (1044)
Q Consensus 691 ~~~~~pei~r~~L~~~~L~~k~l~~~~~~~f 721 (1044)
...-.||++...+..+.+..+..+..+...|
T Consensus 398 ~~vY~~~~l~~t~~~L~~~~~~~~~~~~~al 428 (844)
T TIGR02621 398 FDVYGKKIDKSTWSTLKKLQQLKGKNKRAAL 428 (844)
T ss_pred cCCCCHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 1111357777666666555554443333333
No 61
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.5e-32 Score=296.26 Aligned_cols=374 Identities=20% Similarity=0.211 Sum_probs=245.4
Q ss_pred CchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcE
Q 001615 282 PAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGET 361 (1044)
Q Consensus 282 pi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~ 361 (1044)
-...||..+....+.+ +++|+.|||-|||+.+.+.+...+... +.+||+++||+-|+.|.++.+.+.++.+....
T Consensus 15 e~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~----~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i 89 (542)
T COG1111 15 EPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF----GGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEI 89 (542)
T ss_pred cHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc----CCeEEEecCCchHHHHHHHHHHHHhCCChhhe
Confidence 3456898888888766 799999999999988888777765432 22899999999999999999999998876655
Q ss_pred EEEE--EeccccC--CCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEc
Q 001615 362 VGYQ--IRLESKR--SAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILM 436 (1044)
Q Consensus 362 vgy~--ir~~~~~--~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilm 436 (1044)
+... ++-+.+. -.+.+|+|+||+++.+-|..+. ++.+++|||+|||| |....--.-.+.+..++...+..+++|
T Consensus 90 ~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k~~~ilgL 168 (542)
T COG1111 90 AALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAKNPLILGL 168 (542)
T ss_pred eeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhccCceEEEE
Confidence 5433 3322221 2367899999999999998887 89999999999999 876665566667777777778899999
Q ss_pred ccCC--ChHHHHhhhCCCCeecCCCCc----------cccceee---------------hHHHHH----h---hhcccCc
Q 001615 437 SATI--NADLFSKYFGNAPTVHIPGLT----------FPVTDLF---------------LEDVLE----K---TRYKMNS 482 (1044)
Q Consensus 437 SATl--~~~~~~~~f~~~~~i~v~g~~----------~pv~~~~---------------l~~~~~----~---~~~~~~~ 482 (1044)
|||. +.+.+.+-..+--+-+|.-++ ..++..+ +.+++. . ..+....
T Consensus 169 TASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~ 248 (542)
T COG1111 169 TASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESS 248 (542)
T ss_pred ecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceecc
Confidence 9998 445555555432221111111 1111111 111111 0 0011000
Q ss_pred cc----cccccc--ccc-cccccc-------------chhhhhhhhhcccccccccchhhhhH-----------------
Q 001615 483 KL----DSFQGN--SRR-SRRQDS-------------KKDHLTALFEDVDIDSNYKNYRASTR----------------- 525 (1044)
Q Consensus 483 ~~----~~~~~~--~~~-~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 525 (1044)
.. +.+... ... ....+. +.++..++++..++..-+. |...+.
T Consensus 249 ~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~-Yl~~l~e~~~~~~sk~a~~l~~d 327 (542)
T COG1111 249 SPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQ-YLEKLEEEATKGGSKAAKSLLAD 327 (542)
T ss_pred CcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH-HHHHHHHHhcccchHHHHHHhcC
Confidence 00 000000 000 000000 0111112222222221110 100000
Q ss_pred ----HH---H---HhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEE-----
Q 001615 526 ----AS---L---EAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLP----- 590 (1044)
Q Consensus 526 ----~~---~---~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~----- 590 (1044)
.. + .........++.+.+++....+..++.++|||++-++.++.+.+.|..... ...+..
T Consensus 328 ~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~-----~~~~rFiGQa~ 402 (542)
T COG1111 328 PYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGI-----KARVRFIGQAS 402 (542)
T ss_pred hhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCC-----cceeEEeeccc
Confidence 00 0 001112234566677777777667778999999999999999999987431 111111
Q ss_pred --ecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcc
Q 001615 591 --LHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRG 668 (1044)
Q Consensus 591 --lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~G 668 (1044)
.-.+|++.+|.++++.|+.|..+|||||+|+|.|||||+|++||.|.... |.--++||.|
T Consensus 403 r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvp------------------SeIR~IQR~G 464 (542)
T COG1111 403 REGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVP------------------SEIRSIQRKG 464 (542)
T ss_pred cccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCc------------------HHHHHHHhhC
Confidence 23579999999999999999999999999999999999999999988777 4448999999
Q ss_pred cCCCCCCcEEEEecChh
Q 001615 669 RAGRVQPGVCYKLYPRI 685 (1044)
Q Consensus 669 RAGR~~~G~c~~L~t~~ 685 (1044)
||||.++|..|.|+++.
T Consensus 465 RTGR~r~Grv~vLvt~g 481 (542)
T COG1111 465 RTGRKRKGRVVVLVTEG 481 (542)
T ss_pred ccccCCCCeEEEEEecC
Confidence 99999999999999876
No 62
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.7e-33 Score=295.84 Aligned_cols=339 Identities=17% Similarity=0.252 Sum_probs=253.4
Q ss_pred CCchHHHhHHHHHHHHHHHhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhc
Q 001615 246 QSDSAKERLNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSS 325 (1044)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~ 325 (1044)
..+|++..|.+.|...+....+..+. .+|+.+|..+-.|.++++.+++|+|||.++...+++.+-
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPS-------------aIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD-- 89 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPS-------------AIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQID-- 89 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCch-------------HHHhccccccccCCceeEeeeccccchhhhHHHHHhhcC--
Confidence 34788888888888888777776654 488888888889999999999999999999999988752
Q ss_pred cCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEe------ccccC-CCCccEEEEchHHHHHHHhcCC-CCC
Q 001615 326 LRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIR------LESKR-SAQTRLLFCTTGVLLRQLVEDP-DLS 397 (1044)
Q Consensus 326 ~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir------~~~~~-~~~~~I~v~T~g~Ll~~l~~~~-~L~ 397 (1044)
.....+.+++++|+|+||.|+.+ +...++...+..|--.+. ..... ....+|++.|||+.++++.... ...
T Consensus 90 ~~~ke~qalilaPtreLa~qi~~-v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~ 168 (397)
T KOG0327|consen 90 MSVKETQALILAPTRELAQQIQK-VVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTD 168 (397)
T ss_pred cchHHHHHHHhcchHHHHHHHHH-HHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcccccccc
Confidence 22345789999999999999984 445555544333322211 11122 3357999999999999998776 567
Q ss_pred ccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccCCChHH--HHhhhCCCCe-ecCCCCccccceeehHHHHH
Q 001615 398 CVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINADL--FSKYFGNAPT-VHIPGLTFPVTDLFLEDVLE 474 (1044)
Q Consensus 398 ~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSATl~~~~--~~~~f~~~~~-i~v~g~~~pv~~~~l~~~~~ 474 (1044)
.+.++|+||++|+ +.-+|...+-......+++.|++++|||++.+. +.+-|...|+ +.+...... +
T Consensus 169 ~iKmfvlDEaDEm-Ls~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~lt-----l----- 237 (397)
T KOG0327|consen 169 GIKMFVLDEADEM-LSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELT-----L----- 237 (397)
T ss_pred ceeEEeecchHhh-hccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhh-----h-----
Confidence 7999999999975 777777777777777888999999999998885 3344433332 222111000 0
Q ss_pred hhhcccCccccccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCC
Q 001615 475 KTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGD 554 (1044)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~ 554 (1044)
+.+ ...|.+... +-+...++.++. ..
T Consensus 238 ----------~gi--------------------------kq~~i~v~k----------------~~k~~~l~dl~~--~~ 263 (397)
T KOG0327|consen 238 ----------EGI--------------------------KQFYINVEK----------------EEKLDTLCDLYR--RV 263 (397)
T ss_pred ----------hhe--------------------------eeeeeeccc----------------cccccHHHHHHH--hh
Confidence 000 000000000 002223334443 34
Q ss_pred CCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEE
Q 001615 555 GAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVV 634 (1044)
Q Consensus 555 g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VI 634 (1044)
...+||++|++.+..+...|.. .++.+..+|++|.+.+|..+++.|+.|..+|||.|+.+++|+|+-.+..||
T Consensus 264 ~q~~if~nt~r~v~~l~~~L~~-------~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvi 336 (397)
T KOG0327|consen 264 TQAVIFCNTRRKVDNLTDKLRA-------HGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVV 336 (397)
T ss_pred hcceEEecchhhHHHHHHHHhh-------CCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceee
Confidence 5679999999999999999965 578899999999999999999999999999999999999999999999999
Q ss_pred eCCCCcceeccccccccccccccccHhhHHHhcccCCCC-CCcEEEEecChhhHhhc
Q 001615 635 DCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIHDAM 690 (1044)
Q Consensus 635 d~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~~~~l 690 (1044)
++++|..+. +|+||+||+||. ++|.+..+.++++...+
T Consensus 337 nydlP~~~~------------------~yihR~gr~gr~grkg~~in~v~~~d~~~l 375 (397)
T KOG0327|consen 337 NYDLPARKE------------------NYIHRIGRAGRFGRKGVAINFVTEEDVRDL 375 (397)
T ss_pred eeccccchh------------------hhhhhcccccccCCCceeeeeehHhhHHHH
Confidence 999998555 999999999999 89999999998765543
No 63
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.98 E-value=4.8e-31 Score=323.41 Aligned_cols=301 Identities=18% Similarity=0.204 Sum_probs=211.0
Q ss_pred cCCCchHHHHHHHHHHHcC------CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHH
Q 001615 279 EKLPAFKMKAEFLKAVAEN------QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSS 352 (1044)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~~------~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~ 352 (1044)
-...++++|+++++.|.++ .+++++|+||||||.++..+++..... ++++++++||++||.|+++.+.+
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-----g~q~lilaPT~~LA~Q~~~~l~~ 332 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-----GYQAALMAPTEILAEQHYENLKK 332 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-----CCeEEEEeccHHHHHHHHHHHHH
Confidence 3446899999999999876 379999999999999999999887632 56899999999999999999987
Q ss_pred HhCCCCCcEEEEEEeccc----------cCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHH
Q 001615 353 ERGENLGETVGYQIRLES----------KRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILR 422 (1044)
Q Consensus 353 ~~~~~~g~~vgy~ir~~~----------~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk 422 (1044)
.+. ..|..++.-..... ......+|+|+||+.+.+ ...+.++++|||||+|+.+. ....
T Consensus 333 l~~-~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~Hrfg~--~qr~---- 401 (681)
T PRK10917 333 LLE-PLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----DVEFHNLGLVIIDEQHRFGV--EQRL---- 401 (681)
T ss_pred HHh-hcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----cchhcccceEEEechhhhhH--HHHH----
Confidence 653 33444544332221 112358999999987743 23678999999999995332 2211
Q ss_pred HHcccCCcccEEEcccCCChHHHH-hhhCCCCeecCC---CCccccceeehHHHHHhhhcccCccccccccccccccccc
Q 001615 423 DLLPRRPDLRLILMSATINADLFS-KYFGNAPTVHIP---GLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQD 498 (1044)
Q Consensus 423 ~~~~~~~~~qiilmSATl~~~~~~-~~f~~~~~i~v~---g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (1044)
.+.......++++||||+.+..++ .+++...+..+. ....|+...+...
T Consensus 402 ~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~--------------------------- 454 (681)
T PRK10917 402 ALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPD--------------------------- 454 (681)
T ss_pred HHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCc---------------------------
Confidence 222233457899999998665433 334432221111 1011121111100
Q ss_pred cchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCH--------HHHHHH
Q 001615 499 SKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGW--------NDISKL 570 (1044)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~--------~~i~~l 570 (1044)
+ ..+.+.+.+.... ..+.+++||||.. ..++.+
T Consensus 455 ---~----------------------------------~~~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~ 495 (681)
T PRK10917 455 ---S----------------------------------RRDEVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEET 495 (681)
T ss_pred ---c----------------------------------cHHHHHHHHHHHH--HcCCcEEEEEcccccccchhHHHHHHH
Confidence 0 0000112222222 3456899999964 345666
Q ss_pred HHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccc
Q 001615 571 LDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKL 650 (1044)
Q Consensus 571 ~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~ 650 (1044)
++.|.... .++.+..+||+|++++|+.+++.|++|..+|||||+++|+|||+|++++||+++.++.
T Consensus 496 ~~~L~~~~-----~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~--------- 561 (681)
T PRK10917 496 YEELQEAF-----PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERF--------- 561 (681)
T ss_pred HHHHHHHC-----CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCC---------
Confidence 77776531 2377999999999999999999999999999999999999999999999999888762
Q ss_pred cccccccccHhhHHHhcccCCCC-CCcEEEEecC
Q 001615 651 ACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYP 683 (1044)
Q Consensus 651 ~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t 683 (1044)
+.+.+.||+||+||. .+|.||.+++
T Consensus 562 --------gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 562 --------GLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred --------CHHHHHHHhhcccCCCCceEEEEEEC
Confidence 234889999999999 7899999986
No 64
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.98 E-value=2.8e-31 Score=335.58 Aligned_cols=303 Identities=18% Similarity=0.222 Sum_probs=210.7
Q ss_pred HhcCCCchHHHHHHHHHHHcC------CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHH
Q 001615 277 FREKLPAFKMKAEFLKAVAEN------QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARV 350 (1044)
Q Consensus 277 ~r~~lpi~~~Q~~~i~~i~~~------~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv 350 (1044)
..-.+.+++.|.++++.+.++ .+++++|+||||||.++..+++.... .+++++|++||++||.|+++.+
T Consensus 595 ~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~-----~g~qvlvLvPT~eLA~Q~~~~f 669 (1147)
T PRK10689 595 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE-----NHKQVAVLVPTTLLAQQHYDNF 669 (1147)
T ss_pred HhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH-----cCCeEEEEeCcHHHHHHHHHHH
Confidence 334446899999999999887 89999999999999887766665432 2468999999999999999998
Q ss_pred HHHhCCCCCcEEEEEEeccc---------c-CCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHH
Q 001615 351 SSERGENLGETVGYQIRLES---------K-RSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLII 420 (1044)
Q Consensus 351 ~~~~~~~~g~~vgy~ir~~~---------~-~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~ 420 (1044)
.+.+.. .+..++.-.++.. . .....+|+|+||+.| ..+..+.++++|||||+|+.+.. .
T Consensus 670 ~~~~~~-~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~~v~~~~L~lLVIDEahrfG~~--~---- 738 (1147)
T PRK10689 670 RDRFAN-WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QSDVKWKDLGLLIVDEEHRFGVR--H---- 738 (1147)
T ss_pred HHhhcc-CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hCCCCHhhCCEEEEechhhcchh--H----
Confidence 876543 2333332222111 0 123579999999744 23446789999999999964322 1
Q ss_pred HHHHcccCCcccEEEcccCCChHHHH---hhhCCCCeecCCCC-ccccceeehHHHHHhhhcccCccccccccccccccc
Q 001615 421 LRDLLPRRPDLRLILMSATINADLFS---KYFGNAPTVHIPGL-TFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRR 496 (1044)
Q Consensus 421 lk~~~~~~~~~qiilmSATl~~~~~~---~~f~~~~~i~v~g~-~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (1044)
...+....++.++++||||+.+..+. ..+.+..++..+.. ..++..++..
T Consensus 739 ~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~-------------------------- 792 (1147)
T PRK10689 739 KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVRE-------------------------- 792 (1147)
T ss_pred HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEe--------------------------
Confidence 12233345688999999998665432 22223333322211 1122111100
Q ss_pred cccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHc
Q 001615 497 QDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKV 576 (1044)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~ 576 (1044)
+. +......++..+. .+|.++||+++.+.++.+++.|..
T Consensus 793 -----------------------~~---------------~~~~k~~il~el~---r~gqv~vf~n~i~~ie~la~~L~~ 831 (1147)
T PRK10689 793 -----------------------YD---------------SLVVREAILREIL---RGGQVYYLYNDVENIQKAAERLAE 831 (1147)
T ss_pred -----------------------cC---------------cHHHHHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHHH
Confidence 00 0001222333333 357899999999999999999986
Q ss_pred cccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccc
Q 001615 577 NKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPS 656 (1044)
Q Consensus 577 ~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~ 656 (1044)
.. .+..+..+||+|++++|++++..|++|+.+|||||+++|+|||||+|++||..+... |
T Consensus 832 ~~-----p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~---f------------ 891 (1147)
T PRK10689 832 LV-----PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH---F------------ 891 (1147)
T ss_pred hC-----CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCC---C------------
Confidence 31 356788999999999999999999999999999999999999999999999322111 1
Q ss_pred cccHhhHHHhcccCCCC-CCcEEEEecCh
Q 001615 657 WISKASAHQRRGRAGRV-QPGVCYKLYPR 684 (1044)
Q Consensus 657 ~iS~a~~~QR~GRAGR~-~~G~c~~L~t~ 684 (1044)
+.++|.||+||+||. ..|.||.++..
T Consensus 892 --glaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 892 --GLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred --CHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 223699999999999 78999988864
No 65
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.98 E-value=8.4e-32 Score=299.18 Aligned_cols=344 Identities=19% Similarity=0.216 Sum_probs=261.7
Q ss_pred CCCchHHHhHHHHHHHHHHHhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHh
Q 001615 245 PQSDSAKERLNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELS 324 (1044)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~ 324 (1044)
..++|+...+...+...+.+..+ --.+++|..+|+++..+-|+||.+..|+|||+.|...+++.+..
T Consensus 23 ~~~~fe~l~l~r~vl~glrrn~f-------------~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~ 89 (980)
T KOG4284|consen 23 CTPGFEQLALWREVLLGLRRNAF-------------ALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS 89 (980)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcc-------------cCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc
Confidence 45677777777776666544333 33466999999999999999999999999999998888887643
Q ss_pred ccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcE----EEE-EEeccccCCCCccEEEEchHHHHHHHhcCC-CCCc
Q 001615 325 SLRGADCNIICTQPRRISAISVAARVSSERGENLGET----VGY-QIRLESKRSAQTRLLFCTTGVLLRQLVEDP-DLSC 398 (1044)
Q Consensus 325 ~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~----vgy-~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~ 398 (1044)
+...+.+++++|||++|+||.+.+.+....--|.. +|- .+..+......|+|+|.|||+++.++..+. +.+.
T Consensus 90 --~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~ 167 (980)
T KOG4284|consen 90 --RSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSH 167 (980)
T ss_pred --ccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccc
Confidence 34467889999999999999988877543222332 222 234444445689999999999999998887 8899
Q ss_pred cceEEechhhhccchhHHH-HHHHHHHcccCCcccEEEcccCCChH---HHHhhhCCCCeecCCCCc---cccceeehHH
Q 001615 399 VSHLLVDEIHERGMNEDFL-LIILRDLLPRRPDLRLILMSATINAD---LFSKYFGNAPTVHIPGLT---FPVTDLFLED 471 (1044)
Q Consensus 399 ~~~lIiDEaHeR~~~~d~l-l~~lk~~~~~~~~~qiilmSATl~~~---~~~~~f~~~~~i~v~g~~---~pv~~~~l~~ 471 (1044)
++++||||||.. +++..+ -.+-+.+.......|++.+|||.|.. .+++|+.++..+....+. +-+..+|...
T Consensus 168 vrlfVLDEADkL-~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~ 246 (980)
T KOG4284|consen 168 VRLFVLDEADKL-MDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAK 246 (980)
T ss_pred eeEEEeccHHhh-hchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeec
Confidence 999999999953 554444 34444444566678999999999765 588999887776654332 2222222110
Q ss_pred HHHhhhcccCccccccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhc
Q 001615 472 VLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRH 551 (1044)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~ 551 (1044)
.. .... .+ ...+....+.++++.
T Consensus 247 ---------~s-----------------~nns------------------------ve-------emrlklq~L~~vf~~ 269 (980)
T KOG4284|consen 247 ---------CS-----------------PNNS------------------------VE-------EMRLKLQKLTHVFKS 269 (980)
T ss_pred ---------cC-----------------Ccch------------------------HH-------HHHHHHHHHHHHHhh
Confidence 00 0000 00 012344556667766
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeE
Q 001615 552 EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVV 631 (1044)
Q Consensus 552 ~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~ 631 (1044)
-+-...||||.....++.++..|.. .++.+.++.|.|.+.+|..+++..+.-.++||||||..+||||-|+|+
T Consensus 270 ipy~QAlVF~~~~sra~~~a~~L~s-------sG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vN 342 (980)
T KOG4284|consen 270 IPYVQALVFCDQISRAEPIATHLKS-------SGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVN 342 (980)
T ss_pred CchHHHHhhhhhhhhhhHHHHHhhc-------cCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccc
Confidence 6667789999999999999999987 678899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC-CCcEEEEecChhh
Q 001615 632 YVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (1044)
Q Consensus 632 ~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~ 686 (1044)
.|||.|.|.+-. .|.||+|||||. ..|.++.|+-.+.
T Consensus 343 LVVNiD~p~d~e------------------TY~HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 343 LVVNIDAPADEE------------------TYFHRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred eEEecCCCcchH------------------HHHHHhhhcccccccceeEEEeccch
Confidence 999999998666 999999999999 6799999886553
No 66
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.97 E-value=8.1e-31 Score=319.50 Aligned_cols=300 Identities=20% Similarity=0.267 Sum_probs=205.9
Q ss_pred CchHHHHHHHHHHHcC------CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhC
Q 001615 282 PAFKMKAEFLKAVAEN------QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERG 355 (1044)
Q Consensus 282 pi~~~Q~~~i~~i~~~------~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~ 355 (1044)
.++++|+++++.|.++ .+.+++|+||||||.++.++++..... +.++++++||++||.|+++.+.+.+.
T Consensus 235 ~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-----g~qvlilaPT~~LA~Q~~~~~~~l~~ 309 (630)
T TIGR00643 235 KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-----GYQVALMAPTEILAEQHYNSLRNLLA 309 (630)
T ss_pred CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-----CCcEEEECCHHHHHHHHHHHHHHHhc
Confidence 5799999999999875 258999999999999998888876532 45899999999999999999987654
Q ss_pred CCCCcEEEEEEec----------cccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHc
Q 001615 356 ENLGETVGYQIRL----------ESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLL 425 (1044)
Q Consensus 356 ~~~g~~vgy~ir~----------~~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~ 425 (1044)
. .|..++.-... +.......+|+|+||+.+.+ ...+.++++|||||+|..+... ... +....
T Consensus 310 ~-~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH~fg~~q--r~~-l~~~~ 381 (630)
T TIGR00643 310 P-LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE----KVEFKRLALVIIDEQHRFGVEQ--RKK-LREKG 381 (630)
T ss_pred c-cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc----cccccccceEEEechhhccHHH--HHH-HHHhc
Confidence 2 23334322111 11123357999999997753 3367899999999999543322 111 22221
Q ss_pred ccCCcccEEEcccCCChHHHH-hhhCCCCeecC---CCCccccceeehHHHHHhhhcccCccccccccccccccccccch
Q 001615 426 PRRPDLRLILMSATINADLFS-KYFGNAPTVHI---PGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKK 501 (1044)
Q Consensus 426 ~~~~~~qiilmSATl~~~~~~-~~f~~~~~i~v---~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (1044)
....+.++++||||+.+..+. ..++...+..+ +....|+...+...
T Consensus 382 ~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~------------------------------ 431 (630)
T TIGR00643 382 QGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKH------------------------------ 431 (630)
T ss_pred ccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCc------------------------------
Confidence 111267899999997655433 22332111111 11111221111100
Q ss_pred hhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhc-cCCCCEEEEeCCH--------HHHHHHHH
Q 001615 502 DHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRH-EGDGAILVFLTGW--------NDISKLLD 572 (1044)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~-~~~g~iLVFl~~~--------~~i~~l~~ 572 (1044)
+. ...++..+.+. ..+..++||||.. ..++.+++
T Consensus 432 ~~-------------------------------------~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~ 474 (630)
T TIGR00643 432 DE-------------------------------------KDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYE 474 (630)
T ss_pred ch-------------------------------------HHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHH
Confidence 00 00111111111 2356899999976 34566777
Q ss_pred HHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccc
Q 001615 573 QIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLAC 652 (1044)
Q Consensus 573 ~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~ 652 (1044)
.|.... .++.+..+||+|++++|+.+++.|++|+.+|||||+++|+|||+|++++||.++.++.
T Consensus 475 ~L~~~~-----~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~----------- 538 (630)
T TIGR00643 475 RLKKAF-----PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERF----------- 538 (630)
T ss_pred HHHhhC-----CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcC-----------
Confidence 776421 4678999999999999999999999999999999999999999999999999887762
Q ss_pred cccccccHhhHHHhcccCCCC-CCcEEEEecC
Q 001615 653 LLPSWISKASAHQRRGRAGRV-QPGVCYKLYP 683 (1044)
Q Consensus 653 l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t 683 (1044)
+.+++.||+|||||. .+|.||.++.
T Consensus 539 ------gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 539 ------GLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred ------CHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 345899999999998 7899999983
No 67
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.97 E-value=1.9e-30 Score=302.29 Aligned_cols=383 Identities=18% Similarity=0.215 Sum_probs=228.1
Q ss_pred hcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 001615 278 REKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (1044)
Q Consensus 278 r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~ 357 (1044)
-..+++..||.+++...+ ++++||++|||+|||..+...++++.-.. +..+||+++|++-|+.|....+.. ++..
T Consensus 58 p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~---p~~KiVF~aP~~pLv~QQ~a~~~~-~~~~ 132 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWR---PKGKVVFLAPTRPLVNQQIACFSI-YLIP 132 (746)
T ss_pred cCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcC---CcceEEEeeCCchHHHHHHHHHhh-ccCc
Confidence 356889999999999999 99999999999999999988888886443 247999999999999998754443 3322
Q ss_pred CCcEE--EEEEeccc--cCCCCccEEEEchHHHHHHHhcCC--CCCccceEEechhhhccchhHHHHHHHHHHccc-CCc
Q 001615 358 LGETV--GYQIRLES--KRSAQTRLLFCTTGVLLRQLVEDP--DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPR-RPD 430 (1044)
Q Consensus 358 ~g~~v--gy~ir~~~--~~~~~~~I~v~T~g~Ll~~l~~~~--~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~-~~~ 430 (1044)
-..++ |-++.-.. ..-...+|+|+||++|.+.|.+.. .|+.++++|||||| |..-.-..-.+++.++.. ...
T Consensus 133 ~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H-ra~kn~~Y~~Vmr~~l~~k~~~ 211 (746)
T KOG0354|consen 133 YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH-RTSKNHPYNNIMREYLDLKNQG 211 (746)
T ss_pred ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc-cccccccHHHHHHHHHHhhhcc
Confidence 11111 00000000 112367899999999999998754 57899999999999 654444444445444432 233
Q ss_pred ccEEEcccCCCh--HHHHhhhCCC-CeecC--------------CCCccccce------------eehHHHHHhhhc---
Q 001615 431 LRLILMSATINA--DLFSKYFGNA-PTVHI--------------PGLTFPVTD------------LFLEDVLEKTRY--- 478 (1044)
Q Consensus 431 ~qiilmSATl~~--~~~~~~f~~~-~~i~v--------------~g~~~pv~~------------~~l~~~~~~~~~--- 478 (1044)
.|||++|||+-. +...++..+- ..+.+ .-...|+.. .+++.++.....
T Consensus 212 ~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l 291 (746)
T KOG0354|consen 212 NQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGL 291 (746)
T ss_pred ccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCc
Confidence 499999999943 3344554331 00111 011122220 011111111110
Q ss_pred -ccCcccccccc---------ccccccccccc------hhhhhhhhhccccc--ccc------------cchh-------
Q 001615 479 -KMNSKLDSFQG---------NSRRSRRQDSK------KDHLTALFEDVDID--SNY------------KNYR------- 521 (1044)
Q Consensus 479 -~~~~~~~~~~~---------~~~~~~~~~~~------~~~~~~~~~~~~~~--~~~------------~~~~------- 521 (1044)
........+.. ...+...+... ..+...++....+. ..+ ..|.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~ 371 (746)
T KOG0354|consen 292 IEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEAR 371 (746)
T ss_pred cccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcch
Confidence 00000000000 00000000000 00000001001111 000 0000
Q ss_pred --hhhHHHHHhh---hh----hhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEec
Q 001615 522 --ASTRASLEAW---SA----EQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLH 592 (1044)
Q Consensus 522 --~~~~~~~~~~---~~----~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH 592 (1044)
......+... .. ....+..+.+.+.......+..++|||+.+++.++.+..+|......+-...+-|..-+
T Consensus 372 ~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~ 451 (746)
T KOG0354|consen 372 LIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGK 451 (746)
T ss_pred hhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccc
Confidence 0000011100 00 11123334444444444567789999999999999999999842211111122222222
Q ss_pred ----CCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcc
Q 001615 593 ----GSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRG 668 (1044)
Q Consensus 593 ----~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~G 668 (1044)
.+|++.+|+++++.|+.|..+|||||+|+|.||||+.|+.||.||...... ..+||+|
T Consensus 452 s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpI------------------rmIQrrG 513 (746)
T KOG0354|consen 452 STQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPI------------------RMVQRRG 513 (746)
T ss_pred cccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHH------------------HHHHHhc
Confidence 489999999999999999999999999999999999999999999887443 8999999
Q ss_pred cCCCCCCcEEEEecChh
Q 001615 669 RAGRVQPGVCYKLYPRI 685 (1044)
Q Consensus 669 RAGR~~~G~c~~L~t~~ 685 (1044)
| ||.+.|+|+.|++..
T Consensus 514 R-gRa~ns~~vll~t~~ 529 (746)
T KOG0354|consen 514 R-GRARNSKCVLLTTGS 529 (746)
T ss_pred c-ccccCCeEEEEEcch
Confidence 9 999999999999943
No 68
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=8.7e-31 Score=279.72 Aligned_cols=321 Identities=21% Similarity=0.177 Sum_probs=238.0
Q ss_pred HhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCC
Q 001615 277 FREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGE 356 (1044)
Q Consensus 277 ~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~ 356 (1044)
....--++|+|.+.++.++++++++..|-||||||.++.+++++.+.... ..+.+.+++.|+|+||.|..+-+++ ++.
T Consensus 38 kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-~~g~RalilsptreLa~qtlkvvkd-lgr 115 (529)
T KOG0337|consen 38 KKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-QTGLRALILSPTRELALQTLKVVKD-LGR 115 (529)
T ss_pred HhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-ccccceeeccCcHHHHHHHHHHHHH-hcc
Confidence 33433457799999999999999999999999999999999999987654 4567899999999999999876654 333
Q ss_pred CCC----cEEEEEEecc--ccCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccchhHHHHHHHHHHcccCC
Q 001615 357 NLG----ETVGYQIRLE--SKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRP 429 (1044)
Q Consensus 357 ~~g----~~vgy~ir~~--~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~ 429 (1044)
-.+ ..+|+.--.+ .....+.+|+++|||+++.....-. .|+.+.|||+||++ |-+.++|-.++-+.+.+...
T Consensus 116 gt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad-rlfemgfqeql~e~l~rl~~ 194 (529)
T KOG0337|consen 116 GTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD-RLFEMGFQEQLHEILSRLPE 194 (529)
T ss_pred ccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh-HHHhhhhHHHHHHHHHhCCC
Confidence 221 2334321111 2235578999999999987665433 78999999999999 88888898888777777777
Q ss_pred cccEEEcccCCChHH--HHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhh
Q 001615 430 DLRLILMSATINADL--FSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTAL 507 (1044)
Q Consensus 430 ~~qiilmSATl~~~~--~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (1044)
+.|+++||||++... |++ .|-..|+.+. ++ +-.. ..+.+...
T Consensus 195 ~~QTllfSatlp~~lv~fak----------aGl~~p~lVR-ld-vetk------------------------ise~lk~~ 238 (529)
T KOG0337|consen 195 SRQTLLFSATLPRDLVDFAK----------AGLVPPVLVR-LD-VETK------------------------ISELLKVR 238 (529)
T ss_pred cceEEEEeccCchhhHHHHH----------ccCCCCceEE-ee-hhhh------------------------cchhhhhh
Confidence 899999999999874 332 1222232222 10 0000 00000000
Q ss_pred hhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhc-cCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCe
Q 001615 508 FEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRH-EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKF 586 (1044)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~-~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~ 586 (1044)
+. .+..+-....+.+++.. -.+..++||++++.+++.+...|.. .++
T Consensus 239 f~-------------------------~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~-------~g~ 286 (529)
T KOG0337|consen 239 FF-------------------------RVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRD-------FGG 286 (529)
T ss_pred ee-------------------------eeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHh-------cCC
Confidence 00 00011133444555532 2245799999999999999999987 455
Q ss_pred EEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHh
Q 001615 587 LVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQR 666 (1044)
Q Consensus 587 ~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR 666 (1044)
.+-.++|+|.+.-|..-+.+|..++..++|.|++|++|+|||..+-|||+++|-... -|+||
T Consensus 287 ~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~k------------------lFvhR 348 (529)
T KOG0337|consen 287 EGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDK------------------LFVHR 348 (529)
T ss_pred CccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCc------------------eEEEE
Confidence 566699999999999999999999999999999999999999999999999976544 68999
Q ss_pred cccCCCC-CCcEEEEecChhh
Q 001615 667 RGRAGRV-QPGVCYKLYPRII 686 (1044)
Q Consensus 667 ~GRAGR~-~~G~c~~L~t~~~ 686 (1044)
.||+.|. +.|.+|.|....+
T Consensus 349 Vgr~aragrtg~aYs~V~~~~ 369 (529)
T KOG0337|consen 349 VGRVARAGRTGRAYSLVASTD 369 (529)
T ss_pred ecchhhccccceEEEEEeccc
Confidence 9999999 6999999987653
No 69
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=5.7e-30 Score=294.38 Aligned_cols=299 Identities=21% Similarity=0.275 Sum_probs=194.0
Q ss_pred eEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEE------e-----
Q 001615 299 VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQI------R----- 367 (1044)
Q Consensus 299 ~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~i------r----- 367 (1044)
+++|+||||||||+++.+++++.... +...++++++|+|+|+.|+++++.+.++..++...+... .
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~---~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS---QKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEE 77 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh---CCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchh
Confidence 58999999999999999999987532 234589999999999999999999887765442221100 0
Q ss_pred ccc---------cCCCCccEEEEchHHHHHHHhcCC-----CC--CccceEEechhhhccch--hHHHHHHHHHHcccCC
Q 001615 368 LES---------KRSAQTRLLFCTTGVLLRQLVEDP-----DL--SCVSHLLVDEIHERGMN--EDFLLIILRDLLPRRP 429 (1044)
Q Consensus 368 ~~~---------~~~~~~~I~v~T~g~Ll~~l~~~~-----~L--~~~~~lIiDEaHeR~~~--~d~ll~~lk~~~~~~~ 429 (1044)
.+. .......|+++||+.++..+.... .+ -..++|||||+|.. .+ .+++..+++.+. ..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~-~~~~~~~l~~~l~~l~--~~ 154 (358)
T TIGR01587 78 FEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFY-DEYTLALILAVLEVLK--DN 154 (358)
T ss_pred HHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCC-CHHHHHHHHHHHHHHH--Hc
Confidence 000 001235799999999998876521 11 12389999999953 33 344555555443 34
Q ss_pred cccEEEcccCCChHHHHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhhhh
Q 001615 430 DLRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFE 509 (1044)
Q Consensus 430 ~~qiilmSATl~~~~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (1044)
+.|+|+||||++ +.+.+|+......... ..++..... .. ..+. +. ...
T Consensus 155 ~~~~i~~SATlp-~~l~~~~~~~~~~~~~-~~~~~~~~~---~~--~~~~-------~~------------------~~~ 202 (358)
T TIGR01587 155 DVPILLMSATLP-KFLKEYAEKIGYVEFN-EPLDLKEER---RF--ERHR-------FI------------------KIE 202 (358)
T ss_pred CCCEEEEecCch-HHHHHHHhcCCCcccc-cCCCCcccc---cc--cccc-------ce------------------eec
Confidence 689999999998 4456665432111000 000100000 00 0000 00 000
Q ss_pred cccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEE
Q 001615 510 DVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVL 589 (1044)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~ 589 (1044)
. ....+...+..++..+ ..++++||||+++++++.+++.|.+.. ....+.
T Consensus 203 ~----------------------~~~~~~~~l~~l~~~~---~~~~~~lVf~~t~~~~~~~~~~L~~~~-----~~~~~~ 252 (358)
T TIGR01587 203 S----------------------DKVGEISSLERLLEFI---KKGGKIAIIVNTVDRAQEFYQQLKENA-----PEEEIM 252 (358)
T ss_pred c----------------------ccccCHHHHHHHHHHh---hCCCeEEEEECCHHHHHHHHHHHHhhc-----CCCeEE
Confidence 0 0000011122222221 346799999999999999999998632 234689
Q ss_pred EecCCCChHHHHh----hhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHH
Q 001615 590 PLHGSMPTINQRE----IFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQ 665 (1044)
Q Consensus 590 ~lH~~l~~~er~~----v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~Q 665 (1044)
.+||++++.+|.+ +++.|++|..+|||||+++|+||||+ +++||++..| .++|+|
T Consensus 253 ~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--------------------~~~~iq 311 (358)
T TIGR01587 253 LLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--------------------IDSLIQ 311 (358)
T ss_pred EEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--------------------HHHHHH
Confidence 9999999999976 48899999999999999999999996 7788875443 248999
Q ss_pred hcccCCCCC--C---cEEEEecChhh
Q 001615 666 RRGRAGRVQ--P---GVCYKLYPRII 686 (1044)
Q Consensus 666 R~GRAGR~~--~---G~c~~L~t~~~ 686 (1044)
|+||+||.+ . |..|.++....
T Consensus 312 r~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 312 RLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HhccccCCCCCCCCCCeEEEEeecCC
Confidence 999999972 2 37777776544
No 70
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.96 E-value=9.3e-32 Score=307.78 Aligned_cols=583 Identities=7% Similarity=-0.190 Sum_probs=458.1
Q ss_pred HHHHhccChhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccH
Q 001615 261 RQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRR 340 (1044)
Q Consensus 261 ~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r 340 (1044)
.+-.....-....+...+.-+|.+++.+.+++++..+.++++-+.|+||||++.+++++++...+....-|.+++++||+
T Consensus 385 ~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf 464 (1282)
T KOG0921|consen 385 EILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRF 464 (1282)
T ss_pred HHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccc
Confidence 44444444555556677888999999999999999999999999999999999999999999877666778999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEeccccC-CCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHH
Q 001615 341 ISAISVAARVSSERGENLGETVGYQIRLESKR-SAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLI 419 (1044)
Q Consensus 341 ~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~-~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~ 419 (1044)
+.|...+.++.-++++.++...+|..++.... -...-+.+||.+.|+..+..+ +.+..+.+.||.|+++++||++..
T Consensus 465 ~Sa~prpyg~i~fctvgvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~--m~~ty~dl~v~lmsatIdTd~f~~ 542 (1282)
T KOG0921|consen 465 DSATPRPYGSIMFCTVGVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLRE--MISTYRDLRVVLMSATIDTDLFTN 542 (1282)
T ss_pred cccccccccceeeeccchhhhhhhhcccccccccchhhhhhccchHHHHHHHHh--hhccchhhhhhhhhcccchhhhhh
Confidence 99999999999888888888888887665442 335567789999999888765 467788999999999999999998
Q ss_pred HHHHHcccCCcccEEEcccCCChHHHHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCcccccccccccccccccc
Q 001615 420 ILRDLLPRRPDLRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDS 499 (1044)
Q Consensus 420 ~lk~~~~~~~~~qiilmSATl~~~~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (1044)
.++.+ +++.++++|+|...|-.++-.++...++++++++..++.++-.......... +.. ..
T Consensus 543 ~f~~~------p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~---n~n---------~~ 604 (1282)
T KOG0921|consen 543 FFSSI------PDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGR---NMN---------IL 604 (1282)
T ss_pred hhccc------cceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhccc---ccc---------cc
Confidence 87765 3459999999999998888899999999999999888754321110000000 000 00
Q ss_pred chhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHcccc
Q 001615 500 KKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKF 579 (1044)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~ 579 (1044)
..+....... ...+..+.+...-...+...+.-+...+...|..-.+++..|+|++++--+......+..+..
T Consensus 605 ~dd~~~~~~~-------~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~i 677 (1282)
T KOG0921|consen 605 CDPSYNESTR-------TAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEI 677 (1282)
T ss_pred cChhhcchhh-------hhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhccc
Confidence 0000000000 001111112222222222222223333444555556789999999999999988888877665
Q ss_pred CCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceecccccccccccccccc
Q 001615 580 LGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWIS 659 (1044)
Q Consensus 580 ~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS 659 (1044)
+.. ..+.+...|..+...+++.+++...++.++++..|+.+++.|.+.++.+|++++..+.+.+-+...++....+|-+
T Consensus 678 lp~-Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~ 756 (1282)
T KOG0921|consen 678 LPL-HSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRK 756 (1282)
T ss_pred ccc-hhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhc
Confidence 543 5678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHhcccCCCCCCcEEEEecChhhHhhcCCCCCCccccCChHHHHHHHHhccCCchhhhhhcCCCCCCHHHHHHHHH
Q 001615 660 KASAHQRRGRAGRVQPGVCYKLYPRIIHDAMLPYQLPEILRTPLQELCLHIKSLQLGTVGSFLSKALQPPDPLAVQNAIE 739 (1044)
Q Consensus 660 ~a~~~QR~GRAGR~~~G~c~~L~t~~~~~~l~~~~~pei~r~~L~~~~L~~k~l~~~~~~~fl~~~~~pP~~~~i~~al~ 739 (1044)
+..-.||.|||+|...+.||.+++...+..|..++.|||.++.+....+.++.+-.+.+..|+.+++.+|+......+.-
T Consensus 757 gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~l 836 (1282)
T KOG0921|consen 757 GRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGAL 836 (1282)
T ss_pred ccCceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999888888888777888889989999998887766666
Q ss_pred HHHHcCCCCCCCCcCccccccccccCChhhHHHHHHhhhccChHHHHHHHhcccCCCccccCcchHHHHHHHHhhcCCCC
Q 001615 740 LLKTIGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDS 819 (1044)
Q Consensus 740 ~L~~lgal~~~~~lT~lG~~l~~lpl~p~~~k~ll~~~~~~c~~~~l~iaa~l~~~~~f~~p~~~~~~~~~~~~~~~~~~ 819 (1044)
.+.+.-+.+.+-.+|++++.....|+.+..+++.+.++.+-..+-..+++++--...+|...-. ...-+..+|+.+-
T Consensus 837 d~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~---q~~~~g~kfsdhv 913 (1282)
T KOG0921|consen 837 DANDELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGT---QRKFAGNKFSDHV 913 (1282)
T ss_pred hccCcccchhhhhhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccccc---hhhccccccccch
Confidence 6666666666667999999999999999999999988877666666677766556677754333 2345678899999
Q ss_pred CCcHHHHHHHHHHHHHHhcCc-hhHHHHhhhcCChHHHHHHHHHHHHHHHHHHhcCC
Q 001615 820 CSDHIALLKAFDGYKDAKRNR-RERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGF 875 (1044)
Q Consensus 820 ~sD~l~~l~~f~~~~~~~~~~-~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~ 875 (1044)
.+||.+.+..|+.|..+.... ....||..+-+...++..-.++..||. ++..-++
T Consensus 914 a~~~v~q~~r~~~q~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~-q~~fpe~ 969 (1282)
T KOG0921|consen 914 AIVSVIQGYREAVQMGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLR-QCSFPED 969 (1282)
T ss_pred hhhhhhhhhHHHhhhhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHH-hccCccc
Confidence 999999999999999876443 456789999999999998888888887 5555443
No 71
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=5.4e-28 Score=287.65 Aligned_cols=326 Identities=14% Similarity=0.104 Sum_probs=205.6
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCC
Q 001615 280 KLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLG 359 (1044)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g 359 (1044)
...++++|.++++.+..+++.++++|||+|||..+...+ ...+.. ..+++||++||++|+.|+++++.+.......
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~~---~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~ 187 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLEN---YEGKVLIIVPTTSLVTQMIDDFVDYRLFPRE 187 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHhc---CCCeEEEEECcHHHHHHHHHHHHHhcccccc
Confidence 356788999999999999999999999999997654432 222222 1348999999999999999999876533221
Q ss_pred cEEEEEEeccccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccC
Q 001615 360 ETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT 439 (1044)
Q Consensus 360 ~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSAT 439 (1044)
...+. .. ........+|+|+|++.|.+... ..++++++||+||||+ ..... +..+++.+ .+..++++||||
T Consensus 188 ~~~~i-~~-g~~~~~~~~I~VaT~qsl~~~~~--~~~~~~~~iIvDEaH~-~~~~~-~~~il~~~---~~~~~~lGLTAT 258 (501)
T PHA02558 188 AMHKI-YS-GTAKDTDAPIVVSTWQSAVKQPK--EWFDQFGMVIVDECHL-FTGKS-LTSIITKL---DNCKFKFGLTGS 258 (501)
T ss_pred ceeEE-ec-CcccCCCCCEEEeeHHHHhhchh--hhccccCEEEEEchhc-ccchh-HHHHHHhh---hccceEEEEecc
Confidence 11111 11 11112357899999999986542 2578999999999995 33322 23333332 234579999999
Q ss_pred CChHH-----HHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhhhhccccc
Q 001615 440 INADL-----FSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDID 514 (1044)
Q Consensus 440 l~~~~-----~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (1044)
+.... +..+||... .. +. ..+.+.. .+............ . ....... ...
T Consensus 259 p~~~~~~~~~~~~~fG~i~-~~-------v~---~~~li~~-g~l~~~~~~~v~~~-------~-~~~~~~~-~~~---- 313 (501)
T PHA02558 259 LRDGKANILQYVGLFGDIF-KP-------VT---TSQLMEE-GQVTDLKINSIFLR-------Y-PDEDRVK-LKG---- 313 (501)
T ss_pred CCCccccHHHHHHhhCCce-EE-------ec---HHHHHhC-CCcCCceEEEEecc-------C-CHHHhhh-hcc----
Confidence 85321 234555311 10 10 0111100 00000000000000 0 0000000 000
Q ss_pred ccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCC
Q 001615 515 SNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGS 594 (1044)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~ 594 (1044)
..|.. .+.......-...++..++..+. ..+.++|||+...++++.+++.|.. .+..+..+||+
T Consensus 314 ---~~~~~----~~~~l~~~~~Rn~~I~~~~~~~~--~~~~~~lV~~~~~~h~~~L~~~L~~-------~g~~v~~i~G~ 377 (501)
T PHA02558 314 ---EDYQE----EIKYITSHTKRNKWIANLALKLA--KKGENTFVMFKYVEHGKPLYEMLKK-------VYDKVYYVSGE 377 (501)
T ss_pred ---cchHH----HHHHHhccHHHHHHHHHHHHHHH--hcCCCEEEEEEEHHHHHHHHHHHHH-------cCCCEEEEeCC
Confidence 00000 00000001111233444444443 3456899999999999999999987 45679999999
Q ss_pred CChHHHHhhhCCCCCCCcEEEEee-cccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC
Q 001615 595 MPTINQREIFDRPPPNKRKIVLAT-NIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV 673 (1044)
Q Consensus 595 l~~~er~~v~~~f~~g~~kIlvaT-niae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~ 673 (1044)
+++++|..+++.|+.|...||||| +++++|+|+|++++||.+..++ |+..|+||+||++|.
T Consensus 378 ~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~------------------s~~~~~QriGR~~R~ 439 (501)
T PHA02558 378 VDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSK------------------SKIIVLQSIGRVLRK 439 (501)
T ss_pred CCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCc------------------chhhhhhhhhccccC
Confidence 999999999999999999999999 8999999999999999988887 666999999999999
Q ss_pred CCcE
Q 001615 674 QPGV 677 (1044)
Q Consensus 674 ~~G~ 677 (1044)
.+|+
T Consensus 440 ~~~K 443 (501)
T PHA02558 440 HGSK 443 (501)
T ss_pred CCCC
Confidence 6654
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.96 E-value=2.4e-28 Score=278.16 Aligned_cols=306 Identities=13% Similarity=0.152 Sum_probs=186.2
Q ss_pred HHHHHHHHHHcCC--eEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC---CCc
Q 001615 286 MKAEFLKAVAENQ--VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN---LGE 360 (1044)
Q Consensus 286 ~Q~~~i~~i~~~~--~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~---~g~ 360 (1044)
+|.++++++.+++ +++++||||||||.++.++++.. ..+++++.|+++|+.++++++.+.+... .+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~--------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG--------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDV 72 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc--------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 5889999998876 48899999999999998887742 2367888999999999999988775211 111
Q ss_pred EEEEEEe--------cc------------------ccCCCCccEEEEchHHHHHHHhc---CC------CCCccceEEec
Q 001615 361 TVGYQIR--------LE------------------SKRSAQTRLLFCTTGVLLRQLVE---DP------DLSCVSHLLVD 405 (1044)
Q Consensus 361 ~vgy~ir--------~~------------------~~~~~~~~I~v~T~g~Ll~~l~~---~~------~L~~~~~lIiD 405 (1044)
.+..-.. .. ........|+++||++|..++.. .+ .+.++++||||
T Consensus 73 ~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~D 152 (357)
T TIGR03158 73 NLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFD 152 (357)
T ss_pred eEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEe
Confidence 1111000 00 00012467888889998765542 22 26899999999
Q ss_pred hhhhccchhH-HHH---HHHHHHcccCCcccEEEcccCCChHHHH---hh-hCCCCeecCCCCccccceeehHHHHHhh-
Q 001615 406 EIHERGMNED-FLL---IILRDLLPRRPDLRLILMSATINADLFS---KY-FGNAPTVHIPGLTFPVTDLFLEDVLEKT- 476 (1044)
Q Consensus 406 EaHeR~~~~d-~ll---~~lk~~~~~~~~~qiilmSATl~~~~~~---~~-f~~~~~i~v~g~~~pv~~~~l~~~~~~~- 476 (1044)
|+|+.+.... .++ .....+.......++|+||||++..... +. +.+.+++.++|+.+.-.. + .+.....
T Consensus 153 E~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~-~-~~~~~~~~ 230 (357)
T TIGR03158 153 EFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPD-N-PELEADNK 230 (357)
T ss_pred cccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCC-C-hhhhcccc
Confidence 9998653221 222 3333222222357999999999876332 22 123566666666322100 0 0000000
Q ss_pred --hcccCccccccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCC
Q 001615 477 --RYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGD 554 (1044)
Q Consensus 477 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~ 554 (1044)
.+.... ..+.. .+.. ... +... ....+.+.+....+...+
T Consensus 231 ~~~~~~~~--~~i~~--------------------------~~~~-~~~-------~~~~--~l~~l~~~i~~~~~~~~~ 272 (357)
T TIGR03158 231 TQSFRPVL--PPVEL--------------------------ELIP-APD-------FKEE--ELSELAEEVIERFRQLPG 272 (357)
T ss_pred ccccceec--cceEE--------------------------EEEe-CCc-------hhHH--HHHHHHHHHHHHHhccCC
Confidence 000000 00000 0000 000 0000 000011222222333456
Q ss_pred CCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEE
Q 001615 555 GAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVV 634 (1044)
Q Consensus 555 g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VI 634 (1044)
+++||||++++.++.+++.|+... .++.+..+||.+++.+|.++. +..|||||+++|+|||||++ +||
T Consensus 273 ~k~LIf~nt~~~~~~l~~~L~~~~-----~~~~~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi 340 (357)
T TIGR03158 273 ERGAIILDSLDEVNRLSDLLQQQG-----LGDDIGRITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLI 340 (357)
T ss_pred CeEEEEECCHHHHHHHHHHHhhhC-----CCceEEeeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEE
Confidence 799999999999999999998631 245678899999999997764 57899999999999999987 555
Q ss_pred eCCCCcceeccccccccccccccccHhhHHHhcccCC
Q 001615 635 DCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAG 671 (1044)
Q Consensus 635 d~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAG 671 (1044)
+. |. +.++|+||+||+|
T Consensus 341 -~~-p~------------------~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-AR------------------DAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CC------------------CHHHHhhhcccCC
Confidence 33 54 4559999999998
No 73
>PRK09401 reverse gyrase; Reviewed
Probab=99.96 E-value=2.4e-28 Score=309.68 Aligned_cols=300 Identities=12% Similarity=0.108 Sum_probs=193.4
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHH
Q 001615 272 KAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVS 351 (1044)
Q Consensus 272 ~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~ 351 (1044)
.++.+..-...+|++|.+.++.++.|++++++||||||||+ +.++++..... .+++++|++|||+||.|+++++.
T Consensus 70 ~~~f~~~~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~----~g~~alIL~PTreLa~Qi~~~l~ 144 (1176)
T PRK09401 70 EKFFKKKTGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK----KGKKSYIIFPTRLLVEQVVEKLE 144 (1176)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh----cCCeEEEEeccHHHHHHHHHHHH
Confidence 34555554558899999999999999999999999999996 44444433322 25689999999999999999987
Q ss_pred HHhCCCCCcEEEEEEec-----------ccc-CCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccch------
Q 001615 352 SERGENLGETVGYQIRL-----------ESK-RSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMN------ 413 (1044)
Q Consensus 352 ~~~~~~~g~~vgy~ir~-----------~~~-~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~------ 413 (1044)
+... ..+..+...... ... .....+|+|+|||+|.+.+. .-.+.++++||||||| +.++
T Consensus 145 ~l~~-~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD-~~L~~~k~id 221 (1176)
T PRK09401 145 KFGE-KVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVD-AVLKSSKNID 221 (1176)
T ss_pred HHhh-hcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChH-Hhhhcccchh
Confidence 6543 333322111100 001 12358999999999999876 2245669999999999 4342
Q ss_pred -----hHHHHHHHHHHc---cc----------------------CCcccEEEcccCCChHHH-HhhhCCCCeecCCCCcc
Q 001615 414 -----EDFLLIILRDLL---PR----------------------RPDLRLILMSATINADLF-SKYFGNAPTVHIPGLTF 462 (1044)
Q Consensus 414 -----~d~ll~~lk~~~---~~----------------------~~~~qiilmSATl~~~~~-~~~f~~~~~i~v~g~~~ 462 (1044)
.+|....++.++ +. ..+.|++++|||+++... ..+|.+.-.+.+.....
T Consensus 222 ~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~ 301 (1176)
T PRK09401 222 KLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVF 301 (1176)
T ss_pred hHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCccc
Confidence 233211111111 10 116789999999976422 22333221122211110
Q ss_pred ---ccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchH
Q 001615 463 ---PVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLG 539 (1044)
Q Consensus 463 ---pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (1044)
.+...|.. . + +
T Consensus 302 ~~rnI~~~yi~----------------------------------------~-------------------------~-~ 315 (1176)
T PRK09401 302 YLRNIVDSYIV----------------------------------------D-------------------------E-D 315 (1176)
T ss_pred ccCCceEEEEE----------------------------------------c-------------------------c-c
Confidence 01111100 0 0 0
Q ss_pred HHHHHHHHHHhccCCCCEEEEeCCHHH---HHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEE
Q 001615 540 LVESTIEYICRHEGDGAILVFLTGWND---ISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVL 616 (1044)
Q Consensus 540 li~~~l~~i~~~~~~g~iLVFl~~~~~---i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlv 616 (1044)
....+..+.... +..+||||+++.. ++.+++.|.. .++.+..+||+| ++.++.|++|+.+|||
T Consensus 316 -k~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~-------~gi~v~~~hg~l-----~~~l~~F~~G~~~VLV 381 (1176)
T PRK09401 316 -SVEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLED-------LGINAELAISGF-----ERKFEKFEEGEVDVLV 381 (1176)
T ss_pred -HHHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHH-------CCCcEEEEeCcH-----HHHHHHHHCCCCCEEE
Confidence 111122222222 3478999999777 9999999987 578899999999 2345999999999999
Q ss_pred e----ecccccccCCCC-eEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCC
Q 001615 617 A----TNIAESSITIDD-VVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAG 671 (1044)
Q Consensus 617 a----Tniae~GidIp~-V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAG 671 (1044)
| ||+|+||||||+ |+|||++|.|+... .- . -...+.||.||+-
T Consensus 382 atas~tdv~aRGIDiP~~IryVI~y~vP~~~~-~~--~---------~~~~~~~~~~r~~ 429 (1176)
T PRK09401 382 GVASYYGVLVRGIDLPERIRYAIFYGVPKFKF-SL--E---------EELAPPFLLLRLL 429 (1176)
T ss_pred EecCCCCceeecCCCCcceeEEEEeCCCCEEE-ec--c---------ccccCHHHHHHHH
Confidence 9 699999999999 89999999999332 00 0 0126778888873
No 74
>PRK13766 Hef nuclease; Provisional
Probab=99.96 E-value=1.4e-27 Score=300.82 Aligned_cols=375 Identities=18% Similarity=0.205 Sum_probs=227.5
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCC
Q 001615 280 KLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLG 359 (1044)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g 359 (1044)
.+...+||.+++..++.+ +++|++|||+|||.++.+++...+. ....++||++||++|+.|+++.+.+.++....
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~----~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 87 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH----KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEE 87 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH----hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCc
Confidence 355678999999988877 7999999999999988877777652 23458999999999999999999887664311
Q ss_pred cEEEEEE--eccc--cCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEE
Q 001615 360 ETVGYQI--RLES--KRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLI 434 (1044)
Q Consensus 360 ~~vgy~i--r~~~--~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qii 434 (1044)
..+.+.- .... ....+.+|+|+||+++...+..+. .+.++++||||||| |.........+.+......+..+++
T Consensus 88 ~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH-~~~~~~~~~~i~~~~~~~~~~~~il 166 (773)
T PRK13766 88 KIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH-RAVGNYAYVYIAERYHEDAKNPLVL 166 (773)
T ss_pred eEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc-cccccccHHHHHHHHHhcCCCCEEE
Confidence 2222211 1110 112357899999999998877665 68899999999999 4333322233344444455567899
Q ss_pred EcccCCC--hHHHHhhhCCC--CeecCCCCc--------cccceee---------------hHHHHHh----h---hccc
Q 001615 435 LMSATIN--ADLFSKYFGNA--PTVHIPGLT--------FPVTDLF---------------LEDVLEK----T---RYKM 480 (1044)
Q Consensus 435 lmSATl~--~~~~~~~f~~~--~~i~v~g~~--------~pv~~~~---------------l~~~~~~----~---~~~~ 480 (1044)
+||||+. .+.+...+.+- ..+.+..+. .+....+ +..++.. . ....
T Consensus 167 ~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~ 246 (773)
T PRK13766 167 GLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIV 246 (773)
T ss_pred EEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 9999973 22232222210 011111000 0000000 0000000 0 0000
Q ss_pred Ccc--c--cccccccccccccccc--hh---------------hhhhhhhcccccccccchhhhhH--------------
Q 001615 481 NSK--L--DSFQGNSRRSRRQDSK--KD---------------HLTALFEDVDIDSNYKNYRASTR-------------- 525 (1044)
Q Consensus 481 ~~~--~--~~~~~~~~~~~~~~~~--~~---------------~~~~~~~~~~~~~~~~~~~~~~~-------------- 525 (1044)
... . ..+............. .. ....+++..+.. .+..|.....
T Consensus 247 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~-~~~~y~~~l~~~~~~~~~~~~~~~ 325 (773)
T PRK13766 247 SISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVE-ALRRYLERLREEARSSGGSKASKR 325 (773)
T ss_pred cCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHhhccccCCcHHHHH
Confidence 000 0 0000000000000000 00 000000000000 0000000000
Q ss_pred --------H---HHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCC
Q 001615 526 --------A---SLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGS 594 (1044)
Q Consensus 526 --------~---~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~ 594 (1044)
. .+..........+.+.+++..+....+++++||||++++.++.+++.|.. .++.+..+||.
T Consensus 326 l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~-------~~~~~~~~~g~ 398 (773)
T PRK13766 326 LVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEK-------EGIKAVRFVGQ 398 (773)
T ss_pred HHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHh-------CCCceEEEEcc
Confidence 0 00111111223455666666666556788999999999999999999965 34556667765
Q ss_pred --------CChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHh
Q 001615 595 --------MPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQR 666 (1044)
Q Consensus 595 --------l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR 666 (1044)
|++.+|..+++.|+.|..+|||||+++++|+|+|++++||+|+.+. |...|+||
T Consensus 399 ~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~------------------s~~r~iQR 460 (773)
T PRK13766 399 ASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVP------------------SEIRSIQR 460 (773)
T ss_pred ccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCC------------------CHHHHHHH
Confidence 9999999999999999999999999999999999999999999877 44489999
Q ss_pred cccCCCCCCcEEEEecChhh
Q 001615 667 RGRAGRVQPGVCYKLYPRII 686 (1044)
Q Consensus 667 ~GRAGR~~~G~c~~L~t~~~ 686 (1044)
+||+||.++|.+|.|+++..
T Consensus 461 ~GR~gR~~~~~v~~l~~~~t 480 (773)
T PRK13766 461 KGRTGRQEEGRVVVLIAKGT 480 (773)
T ss_pred hcccCcCCCCEEEEEEeCCC
Confidence 99999999999999998643
No 75
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=3.3e-27 Score=276.70 Aligned_cols=480 Identities=19% Similarity=0.213 Sum_probs=297.2
Q ss_pred HHHHHHHHHHH-cCCeEEEEecCCCchhchHHHHHHHHHHhcc-----CCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC
Q 001615 285 KMKAEFLKAVA-ENQVLVVSGETGCGKTTQLPQFILEEELSSL-----RGADCNIICTQPRRISAISVAARVSSERGENL 358 (1044)
Q Consensus 285 ~~Q~~~i~~i~-~~~~vii~a~TGSGKTt~~p~~il~~~~~~~-----~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~ 358 (1044)
.+|.++++.+. ++.+++||||||||||-.+.+.||..+-... ....-+|++++|+++||.++++.+.+.+. .+
T Consensus 113 ~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~-~~ 191 (1230)
T KOG0952|consen 113 RIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLA-PL 191 (1230)
T ss_pred HHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcc-cc
Confidence 48999999875 5779999999999999999999988765311 12356999999999999999998887764 33
Q ss_pred CcEEEEEEeccccC----CCCccEEEEchHHHH---HHHhcCC-CCCccceEEechhh----hccchhHHHHHHHHHH-c
Q 001615 359 GETVGYQIRLESKR----SAQTRLLFCTTGVLL---RQLVEDP-DLSCVSHLLVDEIH----ERGMNEDFLLIILRDL-L 425 (1044)
Q Consensus 359 g~~vgy~ir~~~~~----~~~~~I~v~T~g~Ll---~~l~~~~-~L~~~~~lIiDEaH----eR~~~~d~ll~~lk~~-~ 425 (1044)
|..|+--.. +... -..|+|+|+||+..- |.-..+. .++.+.+|||||+| +||.-.+.+...+.+. .
T Consensus 192 gi~v~ELTG-D~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~ve 270 (1230)
T KOG0952|consen 192 GISVRELTG-DTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVE 270 (1230)
T ss_pred cceEEEecC-cchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHH
Confidence 444432211 1111 247999999998743 2222222 67889999999999 4776665555443333 2
Q ss_pred ccCCcccEEEcccCC-ChHHHHhhhCCCCe---ecCCC--CccccceeehHHHHHhhhcccCcccccccccccccccccc
Q 001615 426 PRRPDLRLILMSATI-NADLFSKYFGNAPT---VHIPG--LTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDS 499 (1044)
Q Consensus 426 ~~~~~~qiilmSATl-~~~~~~~~f~~~~~---i~v~g--~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (1044)
.....+|+|++|||+ |-+.++.|++-.|. +...+ |+.|++..++-- ... +...
T Consensus 271 ssqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~-------------------k~~--~~~~ 329 (1230)
T KOG0952|consen 271 SSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGI-------------------KGK--KNRQ 329 (1230)
T ss_pred hhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEee-------------------ecc--cchh
Confidence 344578999999998 55689999986432 22222 233333332210 000 0000
Q ss_pred chhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHcccc
Q 001615 500 KKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKF 579 (1044)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~ 579 (1044)
+ ...+|.....+++..+. .+..++|||+++.+....++.|.+...
T Consensus 330 ~--------------------------------~~~~d~~~~~kv~e~~~---~g~qVlvFvhsR~~Ti~tA~~l~~~a~ 374 (1230)
T KOG0952|consen 330 Q--------------------------------KKNIDEVCYDKVVEFLQ---EGHQVLVFVHSRNETIRTAKKLRERAE 374 (1230)
T ss_pred h--------------------------------hhhHHHHHHHHHHHHHH---cCCeEEEEEecChHHHHHHHHHHHHHH
Confidence 0 00111112233333333 456899999999999999998875321
Q ss_pred -------C--CCCCC-------eEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCccee
Q 001615 580 -------L--GDPNK-------FLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETS 643 (1044)
Q Consensus 580 -------~--~~~~~-------~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~ 643 (1044)
+ +...+ ..+..+|++|..++|..+.+.|..|.++|++||..++.|+++|+--++|- | +..
T Consensus 375 ~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIK-G---T~~ 450 (1230)
T KOG0952|consen 375 TNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIK-G---TQV 450 (1230)
T ss_pred hcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEec-C---Ccc
Confidence 1 11112 67888999999999999999999999999999999999999997666663 3 455
Q ss_pred ccccccccccccccccHhhHHHhcccCCCC---CCcEEEEecChh---hHhhcCCCCCC---------------ccccC-
Q 001615 644 YDALNKLACLLPSWISKASAHQRRGRAGRV---QPGVCYKLYPRI---IHDAMLPYQLP---------------EILRT- 701 (1044)
Q Consensus 644 yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~---~~G~c~~L~t~~---~~~~l~~~~~p---------------ei~r~- 701 (1044)
||+..+.-. -.+-.+.+|..|||||. ..|..+.+-+.+ .|..|...+.| ||--.
T Consensus 451 ydsskg~f~----dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgT 526 (1230)
T KOG0952|consen 451 YDSSKGSFV----DLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGT 526 (1230)
T ss_pred cccccCcee----eehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeece
Confidence 887764211 12344899999999999 568888777765 35555544433 21111
Q ss_pred --ChHHHHHHHHhcc----C-Cchhhhh--hcCCC-CCCH-----HHHHHHHHHHHHcCCC--CCC---CCcCccccccc
Q 001615 702 --PLQELCLHIKSLQ----L-GTVGSFL--SKALQ-PPDP-----LAVQNAIELLKTIGAL--DDM---ENLTPLGRHLC 761 (1044)
Q Consensus 702 --~L~~~~L~~k~l~----~-~~~~~fl--~~~~~-pP~~-----~~i~~al~~L~~lgal--~~~---~~lT~lG~~l~ 761 (1044)
++++.+--++.-- . .+...+- -+.+. -|.. +-+..++..|.+...+ |.. -..|++||.++
T Consensus 527 Vt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~stdlGR~aS 606 (1230)
T KOG0952|consen 527 VTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIRFDERTGYLKSTDLGRVAS 606 (1230)
T ss_pred eecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEEEecccceEcccchhhhhh
Confidence 1112111111000 0 0000000 01111 1211 2345566666555443 332 26899999999
Q ss_pred cccCChhhHHHHHHhhh-ccChHHHHHHHhcccCCCccccCcchHHHHHHHH------hhcCCCCCCcHHHHHHHHH
Q 001615 762 TLPVDPNIGKMLLMGAI-FQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAK------RSFAGDSCSDHIALLKAFD 831 (1044)
Q Consensus 762 ~lpl~p~~~k~ll~~~~-~~c~~~~l~iaa~l~~~~~f~~p~~~~~~~~~~~------~~~~~~~~sD~l~~l~~f~ 831 (1044)
.+.+.-+.-+.++.... |--.+++|.|+|.-+.-+-.-..-+++++.+... ..|.. ..++.-.++++|.
T Consensus 607 ~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~el~~~~~~~~~~~~-~~gk~nil~q~~I 682 (1230)
T KOG0952|consen 607 NYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVREEEKKELKELNEDSCEKYPFGG-EKGKVNILLQAYI 682 (1230)
T ss_pred hhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHhcccccccccc-cchhHHHHHHhhh
Confidence 99999999999999887 7778888888775443221111122333333322 22322 2466667776664
No 76
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=1.7e-27 Score=275.27 Aligned_cols=301 Identities=18% Similarity=0.168 Sum_probs=209.6
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEE
Q 001615 286 MKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQ 365 (1044)
Q Consensus 286 ~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ 365 (1044)
-|.++|+.+.+++++++..|||.|||.+|-+|.+-. .+..||+.|--.|-....+.+.. .| ..+.+-
T Consensus 21 gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~--------~G~TLVVSPLiSLM~DQV~~l~~-~G----i~A~~l 87 (590)
T COG0514 21 GQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL--------EGLTLVVSPLISLMKDQVDQLEA-AG----IRAAYL 87 (590)
T ss_pred CHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc--------CCCEEEECchHHHHHHHHHHHHH-cC----ceeehh
Confidence 589999999999999999999999998777776543 23689999998887655444432 22 222211
Q ss_pred ----Eecc------ccCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhcc-chhHHHHHH--HHHHcccCCcc
Q 001615 366 ----IRLE------SKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERG-MNEDFLLII--LRDLLPRRPDL 431 (1044)
Q Consensus 366 ----ir~~------~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~-~~~d~ll~~--lk~~~~~~~~~ 431 (1044)
.+.+ .......+|+|.+|++|..--..+. .-..+.++||||||+-+ +-.||-... +..+....|++
T Consensus 88 nS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~ 167 (590)
T COG0514 88 NSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNP 167 (590)
T ss_pred hcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCC
Confidence 1111 0112246899999998764321111 23578999999999743 334565554 33455667799
Q ss_pred cEEEcccCCChHHHH----hhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhh
Q 001615 432 RLILMSATINADLFS----KYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTAL 507 (1044)
Q Consensus 432 qiilmSATl~~~~~~----~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (1044)
.++.+|||.+..... ....+.+.+.+.+..-|. .++. +.. +.+.
T Consensus 168 p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpN--i~~~---------v~~-----------------~~~~---- 215 (590)
T COG0514 168 PVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPN--LALK---------VVE-----------------KGEP---- 215 (590)
T ss_pred CEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCch--hhhh---------hhh-----------------cccH----
Confidence 999999999876422 222222222221111110 0000 000 0000
Q ss_pred hhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeE
Q 001615 508 FEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFL 587 (1044)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~ 587 (1044)
.+.+. .+.. ......++.||||.|++.++.+++.|.. .++.
T Consensus 216 ------------------------------~~q~~-fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~-------~g~~ 256 (590)
T COG0514 216 ------------------------------SDQLA-FLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRK-------NGIS 256 (590)
T ss_pred ------------------------------HHHHH-HHHh-hccccCCCeEEEEeeHHhHHHHHHHHHH-------CCCc
Confidence 00011 1111 1145567789999999999999999997 4788
Q ss_pred EEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhc
Q 001615 588 VLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRR 667 (1044)
Q Consensus 588 i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~ 667 (1044)
+.++|++|+.++|+.+.+.|.++..+|||||+...+|||.|||++||++++|+ |.++|.|-+
T Consensus 257 a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~------------------s~EsYyQE~ 318 (590)
T COG0514 257 AGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPG------------------SIESYYQET 318 (590)
T ss_pred eEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCC------------------CHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 555999999
Q ss_pred ccCCCC-CCcEEEEecChhhHh
Q 001615 668 GRAGRV-QPGVCYKLYPRIIHD 688 (1044)
Q Consensus 668 GRAGR~-~~G~c~~L~t~~~~~ 688 (1044)
|||||. .+-.|+.||+..+..
T Consensus 319 GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 319 GRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred hhccCCCCcceEEEeeccccHH
Confidence 999999 899999999987643
No 77
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.95 E-value=1.7e-27 Score=293.49 Aligned_cols=337 Identities=22% Similarity=0.226 Sum_probs=232.3
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHH
Q 001615 273 AMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSS 352 (1044)
Q Consensus 273 ~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~ 352 (1044)
.-+..+....+|+||.+++..+.+|++|||+.+||||||.+|.+||+++++... ..++|++-||++||....+++++
T Consensus 61 ~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~---~a~AL~lYPtnALa~DQ~~rl~~ 137 (851)
T COG1205 61 SALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP---SARALLLYPTNALANDQAERLRE 137 (851)
T ss_pred HHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc---CccEEEEechhhhHhhHHHHHHH
Confidence 334455566689999999999999999999999999999999999999998653 34889999999999999999988
Q ss_pred HhCCCCCcEEEEEE-----ecccc---CCCCccEEEEchHHHHHHHhcCC-----CCCccceEEechhhh-ccchhHHHH
Q 001615 353 ERGENLGETVGYQI-----RLESK---RSAQTRLLFCTTGVLLRQLVEDP-----DLSCVSHLLVDEIHE-RGMNEDFLL 418 (1044)
Q Consensus 353 ~~~~~~g~~vgy~i-----r~~~~---~~~~~~I~v~T~g~Ll~~l~~~~-----~L~~~~~lIiDEaHe-R~~~~d~ll 418 (1044)
+.....+ .|...+ ..+.+ ....++|+++||.||.-++.... .++++++|||||+|- |+...--+.
T Consensus 138 ~~~~~~~-~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA 216 (851)
T COG1205 138 LISDLPG-KVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVA 216 (851)
T ss_pred HHHhCCC-cceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHH
Confidence 7654332 332221 11222 24578999999999998665543 578899999999996 565544444
Q ss_pred HHHHHHcc---c-CCcccEEEcccCC--ChHHHHhhhCCCCeecCCCCccccceee--hHHHHHhhhcccCccccccccc
Q 001615 419 IILRDLLP---R-RPDLRLILMSATI--NADLFSKYFGNAPTVHIPGLTFPVTDLF--LEDVLEKTRYKMNSKLDSFQGN 490 (1044)
Q Consensus 419 ~~lk~~~~---~-~~~~qiilmSATl--~~~~~~~~f~~~~~i~v~g~~~pv~~~~--l~~~~~~~~~~~~~~~~~~~~~ 490 (1044)
.++|++.. . ..++|+|.+|||+ +.+...++|+..-...|.+...|-...+ +.+. .......
T Consensus 217 ~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p-----------~~~~~~~ 285 (851)
T COG1205 217 LLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREP-----------PIRELAE 285 (851)
T ss_pred HHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCC-----------cchhhhh
Confidence 44555443 2 2379999999999 4445566666433332433333322111 1100 0000000
Q ss_pred cccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHH
Q 001615 491 SRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKL 570 (1044)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l 570 (1044)
. ...+. ......++.... ..+-++|||+-++..++.+
T Consensus 286 -----------~-----------------~r~s~-------------~~~~~~~~~~~~--~~~~~tL~F~~sr~~~e~~ 322 (851)
T COG1205 286 -----------S-----------------IRRSA-------------LAELATLAALLV--RNGIQTLVFFRSRKQVELL 322 (851)
T ss_pred -----------h-----------------cccch-------------HHHHHHHHHHHH--HcCceEEEEEehhhhhhhh
Confidence 0 00000 000122222222 2356899999999999998
Q ss_pred HHHHHcccc-CCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceecccccc
Q 001615 571 LDQIKVNKF-LGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNK 649 (1044)
Q Consensus 571 ~~~L~~~~~-~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~ 649 (1044)
+........ .+......+..+|++++.++|.++...|+.|..+++++||.+|-||||.+++.||.+|+|..
T Consensus 323 ~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~-------- 394 (851)
T COG1205 323 YLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGV-------- 394 (851)
T ss_pred hhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCc--------
Confidence 733332111 01112356888999999999999999999999999999999999999999999999999983
Q ss_pred ccccccccccHhhHHHhcccCCCC-CCcEEEEecCh
Q 001615 650 LACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPR 684 (1044)
Q Consensus 650 ~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~ 684 (1044)
|..+++||+|||||. +.+..+..+..
T Consensus 395 ---------s~~~~~Q~~GRaGR~~~~~l~~~v~~~ 421 (851)
T COG1205 395 ---------SVLSFRQRAGRAGRRGQESLVLVVLRS 421 (851)
T ss_pred ---------hHHHHHHhhhhccCCCCCceEEEEeCC
Confidence 344999999999999 46665555544
No 78
>PRK14701 reverse gyrase; Provisional
Probab=99.95 E-value=7.5e-27 Score=301.70 Aligned_cols=323 Identities=13% Similarity=0.084 Sum_probs=204.2
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHH
Q 001615 271 GKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARV 350 (1044)
Q Consensus 271 ~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv 350 (1044)
+.++++.-....++++|.++++.++++++++++||||||||+.+..+.+... . .++++||+.|||+||.|+++++
T Consensus 68 ~~~~f~~~~G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~-~----~g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 68 FEEFFEKITGFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA-L----KGKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH-h----cCCeEEEEECHHHHHHHHHHHH
Confidence 3444444233368999999999999999999999999999984333333221 1 2458999999999999999998
Q ss_pred HHHhCCC-CCcEEEEEEec---cc------cC-CCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccch------
Q 001615 351 SSERGEN-LGETVGYQIRL---ES------KR-SAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMN------ 413 (1044)
Q Consensus 351 ~~~~~~~-~g~~vgy~ir~---~~------~~-~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~------ 413 (1044)
....... ++..+.+-... .. .. ....+|+|+|||+|.+.+..-.. .++++|||||||+ .+.
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~-~~i~~iVVDEAD~-ml~~~knid 220 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKH-LKFDFIFVDDVDA-FLKASKNID 220 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhh-CCCCEEEEECcee-ccccccccc
Confidence 7643211 22233222111 10 11 23479999999999887653222 6799999999994 332
Q ss_pred -----hHHHHHHHH----HH---------------------c-ccCCccc-EEEcccCCChH-HHHhhhCCCCeecCCCC
Q 001615 414 -----EDFLLIILR----DL---------------------L-PRRPDLR-LILMSATINAD-LFSKYFGNAPTVHIPGL 460 (1044)
Q Consensus 414 -----~d~ll~~lk----~~---------------------~-~~~~~~q-iilmSATl~~~-~~~~~f~~~~~i~v~g~ 460 (1044)
+||...+.. .+ . ......+ ++++|||++.. ....+|.+.-.+.+...
T Consensus 221 ~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v~~~ 300 (1638)
T PRK14701 221 RSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEVGSG 300 (1638)
T ss_pred hhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEecCC
Confidence 355444432 11 0 1122344 57799999753 34455544333333211
Q ss_pred ccc---cceeehHHHHHhhhcccCccccccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhc
Q 001615 461 TFP---VTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQID 537 (1044)
Q Consensus 461 ~~p---v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (1044)
... +...|.. .+
T Consensus 301 ~~~lr~i~~~yi~-----------------------------------------------------------------~~ 315 (1638)
T PRK14701 301 RSALRNIVDVYLN-----------------------------------------------------------------PE 315 (1638)
T ss_pred CCCCCCcEEEEEE-----------------------------------------------------------------CC
Confidence 110 0001100 00
Q ss_pred hHHHHHHHHHHHhccCCCCEEEEeCCHHHH---HHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEE
Q 001615 538 LGLVESTIEYICRHEGDGAILVFLTGWNDI---SKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKI 614 (1044)
Q Consensus 538 ~~li~~~l~~i~~~~~~g~iLVFl~~~~~i---~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kI 614 (1044)
.+... .+..+.+.. +..+||||++++.+ +.+++.|.. .++.+..+||+ |..+++.|++|..+|
T Consensus 316 ~~~k~-~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~-------~Gi~a~~~h~~-----R~~~l~~F~~G~~~V 381 (1638)
T PRK14701 316 KIIKE-HVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLE-------DGFKIELVSAK-----NKKGFDLFEEGEIDY 381 (1638)
T ss_pred HHHHH-HHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHH-------CCCeEEEecch-----HHHHHHHHHcCCCCE
Confidence 00011 122222222 35789999998864 889999987 57889999995 888999999999999
Q ss_pred EEee----cccccccCCCC-eEEEEeCCCCcce---e-ccccccccccccccccHhhHHHhcccCCCC-CCcEEEEecCh
Q 001615 615 VLAT----NIAESSITIDD-VVYVVDCGKAKET---S-YDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPR 684 (1044)
Q Consensus 615 lvaT----niae~GidIp~-V~~VId~g~~k~~---~-yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~ 684 (1044)
|||| ++|+||||+|+ |+|||++|+|+.. . |...... .+ . .....++.|||||. .++.|+..|..
T Consensus 382 LVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~-~~----~-~~~~~~~~~~a~~~g~~~~~~~~~~~ 455 (1638)
T PRK14701 382 LIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYR-IL----G-LLSEILKIEEELKEGIPIEGVLDVFP 455 (1638)
T ss_pred EEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhh-hh----c-chHHHHHhhhhcccCCcchhHHHhHH
Confidence 9999 59999999999 9999999999932 2 1111100 00 0 22355778999998 57778755544
Q ss_pred h
Q 001615 685 I 685 (1044)
Q Consensus 685 ~ 685 (1044)
.
T Consensus 456 ~ 456 (1638)
T PRK14701 456 E 456 (1638)
T ss_pred H
Confidence 3
No 79
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.94 E-value=4.7e-26 Score=289.44 Aligned_cols=284 Identities=16% Similarity=0.182 Sum_probs=185.3
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHH
Q 001615 271 GKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARV 350 (1044)
Q Consensus 271 ~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv 350 (1044)
+.+..+......+|++|...++.+..|++++++||||||||+ +.++++..... .++++++++|||+||.|+++++
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~----~g~~vLIL~PTreLa~Qi~~~l 141 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK----KGKRCYIILPTTLLVIQVAEKI 141 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh----cCCeEEEEeCHHHHHHHHHHHH
Confidence 334445555668899999999999999999999999999997 54555544332 2468999999999999999988
Q ss_pred HHHhCCCCCc---EEEEE---Eecc------cc-CCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccch----
Q 001615 351 SSERGENLGE---TVGYQ---IRLE------SK-RSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMN---- 413 (1044)
Q Consensus 351 ~~~~~~~~g~---~vgy~---ir~~------~~-~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~---- 413 (1044)
.+... ..+. .+++- .... .. ...+.+|+|+|||+|.+.+..-. .++++||||||| +.++
T Consensus 142 ~~l~~-~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~~~~~iVvDEaD-~~L~~~k~ 217 (1171)
T TIGR01054 142 SSLAE-KAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--PKFDFIFVDDVD-ALLKASKN 217 (1171)
T ss_pred HHHHH-hcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--CCCCEEEEeChH-hhhhcccc
Confidence 77643 2221 12211 1110 11 12358999999999998775422 189999999999 4444
Q ss_pred -------hHHHHHHHHHH----------------------c-ccCCccc--EEEcccCC-ChHHHHhhhCCCCeecCCCC
Q 001615 414 -------EDFLLIILRDL----------------------L-PRRPDLR--LILMSATI-NADLFSKYFGNAPTVHIPGL 460 (1044)
Q Consensus 414 -------~d~ll~~lk~~----------------------~-~~~~~~q--iilmSATl-~~~~~~~~f~~~~~i~v~g~ 460 (1044)
++|....+..+ + ....+.| ++++|||. +...-..+|.+.-.+.+...
T Consensus 218 vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~ 297 (1171)
T TIGR01054 218 VDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGG 297 (1171)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecCc
Confidence 22322111111 1 1122334 67789994 44332234433222222111
Q ss_pred ccc---cceeehHHHHHhhhcccCccccccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhc
Q 001615 461 TFP---VTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQID 537 (1044)
Q Consensus 461 ~~p---v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (1044)
... +...|.. .. . .
T Consensus 298 ~~~~r~I~~~~~~-------------------------------------------------~~------------~--~ 314 (1171)
T TIGR01054 298 SDTLRNVVDVYVE-------------------------------------------------DE------------D--L 314 (1171)
T ss_pred cccccceEEEEEe-------------------------------------------------cc------------c--H
Confidence 100 0000000 00 0 0
Q ss_pred hHHHHHHHHHHHhccCCCCEEEEeCCH---HHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEE
Q 001615 538 LGLVESTIEYICRHEGDGAILVFLTGW---NDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKI 614 (1044)
Q Consensus 538 ~~li~~~l~~i~~~~~~g~iLVFl~~~---~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kI 614 (1044)
...+.+++ +.. +..+||||+++ +.++.+++.|.. .++.+..+||++++ .+++.|++|+.+|
T Consensus 315 ~~~L~~ll----~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~-------~g~~a~~lhg~~~~----~~l~~Fr~G~~~v 378 (1171)
T TIGR01054 315 KETLLEIV----KKL-GTGGIVYVSIDYGKEKAEEIAEFLEN-------HGVKAVAYHATKPK----EDYEKFAEGEIDV 378 (1171)
T ss_pred HHHHHHHH----HHc-CCCEEEEEeccccHHHHHHHHHHHHh-------CCceEEEEeCCCCH----HHHHHHHcCCCCE
Confidence 00122222 222 35689999999 999999999986 57889999999973 6889999999999
Q ss_pred EEe----ecccccccCCCC-eEEEEeCCCCcce
Q 001615 615 VLA----TNIAESSITIDD-VVYVVDCGKAKET 642 (1044)
Q Consensus 615 lva----Tniae~GidIp~-V~~VId~g~~k~~ 642 (1044)
||| ||+|+||||||+ |+|||++|+|+..
T Consensus 379 LVata~~tdv~aRGIDip~~V~~vI~~~~P~~~ 411 (1171)
T TIGR01054 379 LIGVASYYGTLVRGLDLPERVRYAVFLGVPKFK 411 (1171)
T ss_pred EEEeccccCcccccCCCCccccEEEEECCCCEE
Confidence 999 599999999999 8999999999864
No 80
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.94 E-value=1.3e-24 Score=259.28 Aligned_cols=349 Identities=17% Similarity=0.182 Sum_probs=206.6
Q ss_pred HhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCC
Q 001615 277 FREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGE 356 (1044)
Q Consensus 277 ~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~ 356 (1044)
.++.|-+++++.+++..+.-++..|+.++||+|||+++.++++..++. +..++|+.|+++||.|.++.+.....
T Consensus 63 ~~R~lglrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~-----g~~V~VVTpn~yLA~Rdae~m~~l~~- 136 (762)
T TIGR03714 63 DKRVLGMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT-----GKGAMLVTTNDYLAKRDAEEMGPVYE- 136 (762)
T ss_pred HHhhcCCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc-----CCceEEeCCCHHHHHHHHHHHHHHHh-
Confidence 356777788888888888777778999999999999999998877653 23689999999999999988755432
Q ss_pred CCCcEEEEEEec------c---ccCCCCccEEEEchHHH-HHHHhcC-------CCCCccceEEechhhhcc--------
Q 001615 357 NLGETVGYQIRL------E---SKRSAQTRLLFCTTGVL-LRQLVED-------PDLSCVSHLLVDEIHERG-------- 411 (1044)
Q Consensus 357 ~~g~~vgy~ir~------~---~~~~~~~~I~v~T~g~L-l~~l~~~-------~~L~~~~~lIiDEaHeR~-------- 411 (1044)
.+|.+||..... . .+...+++|+|+||+.| .+.|... ..+.++.++||||||..-
T Consensus 137 ~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpl 216 (762)
T TIGR03714 137 WLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPL 216 (762)
T ss_pred hcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCe
Confidence 355666653321 1 11224789999999999 4544321 257889999999999511
Q ss_pred -------chhHHHHH---HHHHHccc-----CCcccEEEcccC-------------C-ChH-----------HHHhh-hC
Q 001615 412 -------MNEDFLLI---ILRDLLPR-----RPDLRLILMSAT-------------I-NAD-----------LFSKY-FG 450 (1044)
Q Consensus 412 -------~~~d~ll~---~lk~~~~~-----~~~~qiilmSAT-------------l-~~~-----------~~~~~-f~ 450 (1044)
..+++... +.+.+... ..+-+.|.++-. + +.+ .-+.| |.
T Consensus 217 iisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~ 296 (762)
T TIGR03714 217 VISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFK 296 (762)
T ss_pred eeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHh
Confidence 11222222 22222111 011233333321 0 010 00111 11
Q ss_pred -C-------CCeecC---CCCccc-------------------cc--------ee---eh---HHHHHhhhcccCccccc
Q 001615 451 -N-------APTVHI---PGLTFP-------------------VT--------DL---FL---EDVLEKTRYKMNSKLDS 486 (1044)
Q Consensus 451 -~-------~~~i~v---~g~~~p-------------------v~--------~~---~l---~~~~~~~~~~~~~~~~~ 486 (1044)
+ ..++.| .||..| +. +. |. ..+...+.-. ......
T Consensus 297 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa-~~~~~E 375 (762)
T TIGR03714 297 RNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTG-KVAEKE 375 (762)
T ss_pred cCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCC-hhHHHH
Confidence 1 111111 122211 00 00 00 1111122211 110000
Q ss_pred ccc----cccc-cc-ccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHh-ccCCCCEEE
Q 001615 487 FQG----NSRR-SR-RQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICR-HEGDGAILV 559 (1044)
Q Consensus 487 ~~~----~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~-~~~~g~iLV 559 (1044)
+.. .... .. ++....+.- +.-|. .. .+...+++..+.+ ...+.++||
T Consensus 376 f~~iY~l~v~~IPt~kp~~r~d~~---------d~i~~----~~-------------~~K~~ai~~~i~~~~~~~~pvLI 429 (762)
T TIGR03714 376 FIETYSLSVVKIPTNKPIIRIDYP---------DKIYA----TL-------------PEKLMATLEDVKEYHETGQPVLL 429 (762)
T ss_pred HHHHhCCCEEEcCCCCCeeeeeCC---------CeEEE----CH-------------HHHHHHHHHHHHHHhhCCCCEEE
Confidence 000 0000 00 000000000 00000 00 0112223333322 144678999
Q ss_pred EeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCC---------Ce
Q 001615 560 FLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITID---------DV 630 (1044)
Q Consensus 560 Fl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp---------~V 630 (1044)
||++.+.++.+.+.|.. .++.+..+||.+.+.++..+...+++| +|+||||+|+||+||+ ++
T Consensus 430 ft~s~~~se~ls~~L~~-------~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL 500 (762)
T TIGR03714 430 ITGSVEMSEIYSELLLR-------EGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGL 500 (762)
T ss_pred EECcHHHHHHHHHHHHH-------CCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCe
Confidence 99999999999999987 467788899999999999998888777 7999999999999999 99
Q ss_pred EEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC-CCcEEEEecChhh
Q 001615 631 VYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (1044)
Q Consensus 631 ~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~ 686 (1044)
.+||++..|.... . .||+|||||. .+|.|+.+++.++
T Consensus 501 ~vIit~~~ps~ri------------------d-~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 501 AVIGTERMENSRV------------------D-LQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred EEEEecCCCCcHH------------------H-HHhhhcccCCCCceeEEEEEccch
Confidence 9999999997433 5 9999999999 7999999988643
No 81
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=9.4e-25 Score=257.75 Aligned_cols=106 Identities=19% Similarity=0.171 Sum_probs=90.7
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCC---Ce
Q 001615 554 DGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITID---DV 630 (1044)
Q Consensus 554 ~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp---~V 630 (1044)
+.++||||++.+.++.+++.|.. .++.+..+||.+...++..+...+. ..+|+||||+|+||+||+ +|
T Consensus 473 ~~pvLIft~t~~~se~L~~~L~~-------~gi~~~~Lhg~~~~rE~~ii~~ag~--~g~VlVATdmAgRGtDI~l~~~V 543 (656)
T PRK12898 473 GRPVLVGTRSVAASERLSALLRE-------AGLPHQVLNAKQDAEEAAIVARAGQ--RGRITVATNMAGRGTDIKLEPGV 543 (656)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHH-------CCCCEEEeeCCcHHHHHHHHHHcCC--CCcEEEEccchhcccCcCCccch
Confidence 46799999999999999999987 5678899999977666665554444 446999999999999999 77
Q ss_pred E-----EEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC-CCcEEEEecChhh
Q 001615 631 V-----YVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (1044)
Q Consensus 631 ~-----~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~ 686 (1044)
. +||++++|. |...|.||+|||||. .+|.|+.+++.++
T Consensus 544 ~~~GGLhVI~~d~P~------------------s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 544 AARGGLHVILTERHD------------------SARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred hhcCCCEEEEcCCCC------------------CHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 7 999999999 445999999999999 7999999998643
No 82
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=1.6e-25 Score=259.33 Aligned_cols=376 Identities=15% Similarity=0.133 Sum_probs=239.5
Q ss_pred cCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC
Q 001615 279 EKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENL 358 (1044)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~ 358 (1044)
-.+.+..+|+++|..+..|..|+|.|+|.+|||..+-..|.- +. ....+.++|.|-++|..|-++.+++.++. +
T Consensus 294 ~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAial-aq----~h~TR~iYTSPIKALSNQKfRDFk~tF~D-v 367 (1248)
T KOG0947|consen 294 YPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIAL-AQ----KHMTRTIYTSPIKALSNQKFRDFKETFGD-V 367 (1248)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHH-HH----hhccceEecchhhhhccchHHHHHHhccc-c
Confidence 345677899999999999999999999999999655433322 21 22468999999999999999999887763 4
Q ss_pred CcEEEEEEeccccCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccchhHHHHHHHH--HHcccCCcccEEE
Q 001615 359 GETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILR--DLLPRRPDLRLIL 435 (1044)
Q Consensus 359 g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~~d~ll~~lk--~~~~~~~~~qiil 435 (1044)
|.. ..+....+.+.+++||+++|..+|.++. .++++.+||+||+| .-.|...+.+. .+.-..+.+++|+
T Consensus 368 gLl-----TGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVH---YiND~eRGvVWEEViIMlP~HV~~Il 439 (1248)
T KOG0947|consen 368 GLL-----TGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH---YINDVERGVVWEEVIIMLPRHVNFIL 439 (1248)
T ss_pred cee-----ecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeee---ecccccccccceeeeeeccccceEEE
Confidence 433 3355667788999999999999999887 78999999999999 22222222221 1233556899999
Q ss_pred cccCC-ChHHHHhhhCCC-----CeecCCCCccccceeehHH--HHH---h-hhcccCcccccccccccccccc-ccchh
Q 001615 436 MSATI-NADLFSKYFGNA-----PTVHIPGLTFPVTDLFLED--VLE---K-TRYKMNSKLDSFQGNSRRSRRQ-DSKKD 502 (1044)
Q Consensus 436 mSATl-~~~~~~~~f~~~-----~~i~v~g~~~pv~~~~l~~--~~~---~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 502 (1044)
+|||+ |...|++|.|.. -++....|+.|++.++.-. .+. . ..+......+...... ...+. ..+.+
T Consensus 440 LSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~-~~ak~~~~~~~ 518 (1248)
T KOG0947|consen 440 LSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK-KEAKFVDVEKS 518 (1248)
T ss_pred EeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhc-ccccccccccc
Confidence 99998 556799999852 2455567788887654321 110 0 0000000000000000 00000 00000
Q ss_pred hhhh--hhhcccccccccch-hhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHcccc
Q 001615 503 HLTA--LFEDVDIDSNYKNY-RASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKF 579 (1044)
Q Consensus 503 ~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~ 579 (1044)
.-.. --....-+.++.+- +.. + ......-+...+.+++.++.. ..--+++|||=+++.|++.++.|....+
T Consensus 519 ~~~~~rgs~~~ggk~~~~~g~~r~---~--~~~~nrr~~~~~l~lin~L~k-~~lLP~VvFvFSkkrCde~a~~L~~~nL 592 (1248)
T KOG0947|consen 519 DARGGRGSQKRGGKTNYHNGGSRG---S--GIGKNRRKQPTWLDLINHLRK-KNLLPVVVFVFSKKRCDEYADYLTNLNL 592 (1248)
T ss_pred cccccccccccCCcCCCCCCCccc---c--cccccccccchHHHHHHHHhh-cccCceEEEEEccccHHHHHHHHhccCc
Confidence 0000 00000000000000 000 0 000000001235566666653 3456899999999999999999875322
Q ss_pred CC-------------------CC-------------CCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCC
Q 001615 580 LG-------------------DP-------------NKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITI 627 (1044)
Q Consensus 580 ~~-------------------~~-------------~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidI 627 (1044)
.. .. ..-.+..|||++-+--.+-|.-.|..|-+|||+||-++++|||.
T Consensus 593 ~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNM 672 (1248)
T KOG0947|consen 593 TDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNM 672 (1248)
T ss_pred ccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCC
Confidence 11 00 11257889999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC---CCcEEEEecChh
Q 001615 628 DDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV---QPGVCYKLYPRI 685 (1044)
Q Consensus 628 p~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~---~~G~c~~L~t~~ 685 (1044)
|.-++|+++= .| +|... -.-+...+|.|++|||||. ..|+.+.+....
T Consensus 673 PARtvVF~Sl-~K---hDG~e------fR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 673 PARTVVFSSL-RK---HDGNE------FRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred CceeEEeeeh-hh---ccCcc------eeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 9988888743 22 33322 2334566999999999998 579988887654
No 83
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=3e-24 Score=258.77 Aligned_cols=366 Identities=16% Similarity=0.164 Sum_probs=213.7
Q ss_pred cCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC
Q 001615 279 EKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENL 358 (1044)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~ 358 (1044)
-.+-+|++|......+.+|+ |+.+.||+|||+++.++++..++. +..+.|+.|+++||.|.++.+...+. .+
T Consensus 75 ~g~~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~-----G~~v~VvTpt~~LA~qd~e~~~~l~~-~l 146 (790)
T PRK09200 75 LGMRPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE-----GKGVHLITVNDYLAKRDAEEMGQVYE-FL 146 (790)
T ss_pred hCCCCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc-----CCCeEEEeCCHHHHHHHHHHHHHHHh-hc
Confidence 34566777777777777776 999999999999999999876653 45789999999999999988766543 45
Q ss_pred CcEEEEEEeccc-----cCCCCccEEEEchHHH-HHHHhcC-------CCCCccceEEechhhhccch------------
Q 001615 359 GETVGYQIRLES-----KRSAQTRLLFCTTGVL-LRQLVED-------PDLSCVSHLLVDEIHERGMN------------ 413 (1044)
Q Consensus 359 g~~vgy~ir~~~-----~~~~~~~I~v~T~g~L-l~~l~~~-------~~L~~~~~lIiDEaHeR~~~------------ 413 (1044)
|.+||.-+.... +..-+++|+|+||+.| .++|... ..+.++.++||||||..-+|
T Consensus 147 Gl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~ 226 (790)
T PRK09200 147 GLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKP 226 (790)
T ss_pred CCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCC
Confidence 677776543322 2224689999999998 4444321 15688999999999941111
Q ss_pred ---hHHHHHH---HHHHccc-----CCcccEEEcccCCChHHHHhhhCCCCeecCCCCccccceeehHHHHHh-------
Q 001615 414 ---EDFLLII---LRDLLPR-----RPDLRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEK------- 475 (1044)
Q Consensus 414 ---~d~ll~~---lk~~~~~-----~~~~qiilmSATl~~~~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~------- 475 (1044)
..+.... .+.+... .++.+.+.++.. ..+.+.++|+-.+....+... -.+++...+..
T Consensus 227 ~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~-g~~~~e~~~~i~~l~~~~~~~---~~~~i~~Al~A~~~~~~d 302 (790)
T PRK09200 227 RVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQ-GIEKAESYFGIDNLYSLEHQV---LYRHIILALRAHVLFKRD 302 (790)
T ss_pred ccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHh-HHHHHHHhcCCccccChhhhH---HHHHHHHHHHHHHHhhcC
Confidence 1111111 1111110 012233332221 112344555432221111100 00222222211
Q ss_pred hhcccCcc----ccccccccccccccccchhhhhhhhh---ccccccc--------c----cchh---------hhhHHH
Q 001615 476 TRYKMNSK----LDSFQGNSRRSRRQDSKKDHLTALFE---DVDIDSN--------Y----KNYR---------ASTRAS 527 (1044)
Q Consensus 476 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--------~----~~~~---------~~~~~~ 527 (1044)
..|.+... .+.+.+..... ..-.+-+.++++ ...+... + ..|. ......
T Consensus 303 ~dYiV~~~~v~ivD~~TGr~~~g---r~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e 379 (790)
T PRK09200 303 VDYIVYDGEIVLVDRFTGRVLPG---RKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKE 379 (790)
T ss_pred CcEEEECCEEEEEECCCCcCCCC---CccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHH
Confidence 11111110 01111110000 000111222111 1111000 0 0000 000000
Q ss_pred HHhh-h-----------------hhh---hchHHHHHHHHHHHhc-cCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCC
Q 001615 528 LEAW-S-----------------AEQ---IDLGLVESTIEYICRH-EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNK 585 (1044)
Q Consensus 528 ~~~~-~-----------------~~~---~~~~li~~~l~~i~~~-~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~ 585 (1044)
+... . .+. ...+....++..+... ....++||||.+.+.++.+++.|.. .+
T Consensus 380 ~~~~Y~l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~-------~g 452 (790)
T PRK09200 380 FFEVYNMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDE-------AG 452 (790)
T ss_pred HHHHhCCcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH-------CC
Confidence 0000 0 000 0112333344444332 3567899999999999999999987 46
Q ss_pred eEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCC---CCeE-----EEEeCCCCcceecccccccccccccc
Q 001615 586 FLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITI---DDVV-----YVVDCGKAKETSYDALNKLACLLPSW 657 (1044)
Q Consensus 586 ~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidI---p~V~-----~VId~g~~k~~~yd~~~~~~~l~~~~ 657 (1044)
+.+..+||.+.++++..+...+.+| +|+||||+|+||+|| |+|. +||++++|.
T Consensus 453 i~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~----------------- 513 (790)
T PRK09200 453 IPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERME----------------- 513 (790)
T ss_pred CCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCC-----------------
Confidence 7788999999999998888888776 799999999999999 7999 999999999
Q ss_pred ccHhhHHHhcccCCCC-CCcEEEEecChhh
Q 001615 658 ISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (1044)
Q Consensus 658 iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~ 686 (1044)
|...|.||+|||||. .+|.|+.+++.++
T Consensus 514 -s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 514 -SRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred -CHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 455999999999999 7999999998643
No 84
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=1.5e-25 Score=253.69 Aligned_cols=361 Identities=18% Similarity=0.185 Sum_probs=243.1
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCc
Q 001615 281 LPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGE 360 (1044)
Q Consensus 281 lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~ 360 (1044)
+-+.++|..+|..+.+++.|+|+|-|.+|||..+-..|...+-. ..+||+|.|-++|..|-++.+..|++ .+|.
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~-----kQRVIYTSPIKALSNQKYREl~~EF~-DVGL 201 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE-----KQRVIYTSPIKALSNQKYRELLEEFK-DVGL 201 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh-----cCeEEeeChhhhhcchhHHHHHHHhc-ccce
Confidence 45678999999999999999999999999996666555554432 34999999999999999999999987 4555
Q ss_pred EEEEEEeccccCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhh-----hccchhHHHHHHHHHHcccCCcccEE
Q 001615 361 TVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIH-----ERGMNEDFLLIILRDLLPRRPDLRLI 434 (1044)
Q Consensus 361 ~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaH-----eR~~~~d~ll~~lk~~~~~~~~~qii 434 (1044)
..| +-..++.+..+|||+++|..+|.++. -+..+.+||+||+| ||++-- -..+.-..++.+.|
T Consensus 202 MTG-----DVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVW------EETIIllP~~vr~V 270 (1041)
T KOG0948|consen 202 MTG-----DVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVW------EETIILLPDNVRFV 270 (1041)
T ss_pred eec-----ceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceee------eeeEEeccccceEE
Confidence 554 33456778899999999999999887 78899999999999 343221 11233356689999
Q ss_pred EcccCC-ChHHHHhhhC-----CCCeecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhhh
Q 001615 435 LMSATI-NADLFSKYFG-----NAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALF 508 (1044)
Q Consensus 435 lmSATl-~~~~~~~~f~-----~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (1044)
.+|||+ |+..|++|.. .|.++...-|+.|+..+... .....-|.+......| ..+.+....
T Consensus 271 FLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP-~ggdGlylvVDek~~F------------rednF~~am 337 (1041)
T KOG0948|consen 271 FLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFP-AGGDGLYLVVDEKGKF------------REDNFQKAM 337 (1041)
T ss_pred EEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeec-CCCCeeEEEEeccccc------------chHHHHHHH
Confidence 999999 5567999984 46677778888888655221 1011111111111111 011111111
Q ss_pred hc---ccccccccchhhhhHHHH-HhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccC----
Q 001615 509 ED---VDIDSNYKNYRASTRASL-EAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFL---- 580 (1044)
Q Consensus 509 ~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~---- 580 (1044)
.. ..-...++..+...+.-. ..-..... -+..++..|.. ....++|||.=++++|+..+-.+....+.
T Consensus 338 ~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s---~i~kiVkmi~~-~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deE 413 (1041)
T KOG0948|consen 338 SVLRKAGESDGKKKANKKGRKGGTGGKGPGDS---DIYKIVKMIME-RNYLPVIVFSFSKKECEAYALQMSKLDFNTDEE 413 (1041)
T ss_pred HHhhccCCCccccccccccccCCcCCCCCCcc---cHHHHHHHHHh-hcCCceEEEEecHhHHHHHHHhhccCcCCChhH
Confidence 10 000000000000000000 00000001 14445555553 34568999999999999998877542211
Q ss_pred ---------------CC-------------CCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEE
Q 001615 581 ---------------GD-------------PNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVY 632 (1044)
Q Consensus 581 ---------------~~-------------~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~ 632 (1044)
.. ...-+|..|||+|-+--.+-|.-.|..|-+|||+||.+.+.|+++|.-++
T Consensus 414 k~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTV 493 (1041)
T KOG0948|consen 414 KELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTV 493 (1041)
T ss_pred HHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeE
Confidence 00 01335788999999988888888899999999999999999999997776
Q ss_pred EEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC---CCcEEEEecChh
Q 001615 633 VVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV---QPGVCYKLYPRI 685 (1044)
Q Consensus 633 VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~---~~G~c~~L~t~~ 685 (1044)
|.- ....||.. .-+|||--+|+|+.|||||. ..|+|+.+.++.
T Consensus 494 vFT----~~rKfDG~------~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 494 VFT----AVRKFDGK------KFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred EEe----eccccCCc------ceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 642 22235443 46899999999999999998 579999999865
No 85
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=5.7e-24 Score=251.99 Aligned_cols=447 Identities=19% Similarity=0.201 Sum_probs=280.8
Q ss_pred chHHHHHHHHHHHcC-CeEEEEecCCCchhchHHHHHHHHHHhccC------CCCcEEEEEcccHHHHHHHHHHHHHHhC
Q 001615 283 AFKMKAEFLKAVAEN-QVLVVSGETGCGKTTQLPQFILEEELSSLR------GADCNIICTQPRRISAISVAARVSSERG 355 (1044)
Q Consensus 283 i~~~Q~~~i~~i~~~-~~vii~a~TGSGKTt~~p~~il~~~~~~~~------~~~~~ilv~~P~r~la~qva~rv~~~~~ 355 (1044)
+..+|..+.++.+.+ .++++|||||+|||-.+.+-+|+.+-.+.+ -...+|++++|..+|+..+...+++.+.
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla 389 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLA 389 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcc
Confidence 456899999988765 489999999999999999999988754332 1345899999999999999887776543
Q ss_pred CCCCcEEEEEEecccc---CCCCccEEEEchHHHHHHHhcCC---CCCccceEEechhhh----ccchhHHHH-HHHHHH
Q 001615 356 ENLGETVGYQIRLESK---RSAQTRLLFCTTGVLLRQLVEDP---DLSCVSHLLVDEIHE----RGMNEDFLL-IILRDL 424 (1044)
Q Consensus 356 ~~~g~~vgy~ir~~~~---~~~~~~I~v~T~g~Ll~~l~~~~---~L~~~~~lIiDEaHe----R~~~~d~ll-~~lk~~ 424 (1044)
..|.+|+-..+.... --..|.|++|||+.---.-+.+. ..+-|+.+||||+|- ||.-..-.- -..+..
T Consensus 390 -~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~s 468 (1674)
T KOG0951|consen 390 -PLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRS 468 (1674)
T ss_pred -ccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHh
Confidence 456666544332221 12478999999987533222222 345689999999982 443222211 122333
Q ss_pred cccCCcccEEEcccCCC-hHHHHhhhCCCC----eecCCCCccccceeehHHHHHhhhcccCcccccccccccccccccc
Q 001615 425 LPRRPDLRLILMSATIN-ADLFSKYFGNAP----TVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDS 499 (1044)
Q Consensus 425 ~~~~~~~qiilmSATl~-~~~~~~~f~~~~----~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (1044)
.......+++++|||+| -+..+.|++..+ .+.-.-|+.|+...|+.-.
T Consensus 469 es~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~--------------------------- 521 (1674)
T KOG0951|consen 469 ESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGIT--------------------------- 521 (1674)
T ss_pred hhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccc---------------------------
Confidence 33445789999999994 456777665433 2222445566666554310
Q ss_pred chhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccc-
Q 001615 500 KKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNK- 578 (1044)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~- 578 (1044)
.+..+.. +.. .-......++++...+.||||+.++++..+.++.++...
T Consensus 522 ek~~~~~---------------------~qa---------mNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~l 571 (1674)
T KOG0951|consen 522 EKKPLKR---------------------FQA---------MNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKAL 571 (1674)
T ss_pred cCCchHH---------------------HHH---------HHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHh
Confidence 0000000 000 011233445555666899999999999999888887311
Q ss_pred -----------------------------cCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCC
Q 001615 579 -----------------------------FLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDD 629 (1044)
Q Consensus 579 -----------------------------~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~ 629 (1044)
-+.+...+++..||++|...+|..+.+.|..|.++|+|+|..+++|++.|.
T Consensus 572 e~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpa 651 (1674)
T KOG0951|consen 572 EEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPA 651 (1674)
T ss_pred hhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCc
Confidence 112335788999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCCC-----CcEEEEecChhhHh-hcCCCCCC--ccccC
Q 001615 630 VVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQ-----PGVCYKLYPRIIHD-AMLPYQLP--EILRT 701 (1044)
Q Consensus 630 V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~-----~G~c~~L~t~~~~~-~l~~~~~p--ei~r~ 701 (1044)
-+++|- ....|||..+.- ..+|.-+..||.|||||.+ .|+...=+++-+|. ++...+.| +-.-.
T Consensus 652 htViik----gtqvy~pekg~w----~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~ 723 (1674)
T KOG0951|consen 652 HTVIIK----GTQVYDPEKGRW----TELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVS 723 (1674)
T ss_pred ceEEec----CccccCcccCcc----ccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHH
Confidence 888874 456799987742 3458889999999999983 34444444444432 33333333 22111
Q ss_pred ChHHHHHHH-HhccCCc---hhhhhh------cCCCCCC-----------------HHHHHHHHHHHHHcCCCCCC----
Q 001615 702 PLQELCLHI-KSLQLGT---VGSFLS------KALQPPD-----------------PLAVQNAIELLKTIGALDDM---- 750 (1044)
Q Consensus 702 ~L~~~~L~~-k~l~~~~---~~~fl~------~~~~pP~-----------------~~~i~~al~~L~~lgal~~~---- 750 (1044)
.|.. ||.. +.+|+.. ..+++. +.+..|. .+-++.|...|.+.|.|--+
T Consensus 724 rl~d-~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~~s~ 802 (1674)
T KOG0951|consen 724 RLAD-CLNAEIVLGVRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKAGLIKYDRKSG 802 (1674)
T ss_pred Hhhh-hhhhhhhcchhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhHHHHHhhHhhcCccccccccC
Confidence 2211 1111 1223221 122220 1112221 24578899999999988422
Q ss_pred -CCcCccccccccccCChhhHHHHHHhhhccChHHHHHHHhcccCCCcc
Q 001615 751 -ENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPF 798 (1044)
Q Consensus 751 -~~lT~lG~~l~~lpl~p~~~k~ll~~~~~~c~~~~l~iaa~l~~~~~f 798 (1044)
-+.|.+|+..+.+.+.-.-....-....-.|.+. .+..+++-.+-|
T Consensus 803 ~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i--~lfrifs~seEf 849 (1674)
T KOG0951|consen 803 AIQATELGRIASSYYITHGSMATYNELLKETMSEI--DLFRIFSKSEEF 849 (1674)
T ss_pred cccchhhccccceeeeecchHHHHHhhhhhhhccc--hhhhhhhhcccc
Confidence 3689999999999987554443333322233332 334444444444
No 86
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=2.8e-24 Score=256.57 Aligned_cols=330 Identities=11% Similarity=0.096 Sum_probs=194.0
Q ss_pred CCCchHHHHHHHHHHHc-C--CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCC
Q 001615 280 KLPAFKMKAEFLKAVAE-N--QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGE 356 (1044)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~-~--~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~ 356 (1044)
...+++||.+++..+.. + +..+|+.|||+|||.+....+. .. ..++||++|+.+|+.|+.+++.+....
T Consensus 253 ~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l-------~k~tLILvps~~Lv~QW~~ef~~~~~l 324 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV-------KKSCLVLCTSAVSVEQWKQQFKMWSTI 324 (732)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh-------CCCEEEEeCcHHHHHHHHHHHHHhcCC
Confidence 45678999999999874 3 3689999999999977664432 22 236888899999999999999887544
Q ss_pred CCCcEEEEEEeccccCCCCccEEEEchHHHHHHHhcC-------CCC--CccceEEechhhhccchhHHHHHHHHHHccc
Q 001615 357 NLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVED-------PDL--SCVSHLLVDEIHERGMNEDFLLIILRDLLPR 427 (1044)
Q Consensus 357 ~~g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~-------~~L--~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~ 427 (1044)
.......|.-...........|+|+|..++.....+. ..+ ..+++||+||||+ . -......++..+
T Consensus 325 ~~~~I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~-l-pA~~fr~il~~l--- 399 (732)
T TIGR00603 325 DDSQICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHV-V-PAAMFRRVLTIV--- 399 (732)
T ss_pred CCceEEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccc-c-cHHHHHHHHHhc---
Confidence 3322222211111111224679999999886432211 112 4688999999995 2 232222233322
Q ss_pred CCcccEEEcccCCChH-----HHHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccchh
Q 001615 428 RPDLRLILMSATINAD-----LFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKD 502 (1044)
Q Consensus 428 ~~~~qiilmSATl~~~-----~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (1044)
.....+++|||+..+ .+..+|| +.+...+ ..+.... .+....... ..+.... .+
T Consensus 400 -~a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~----------~~eLi~~-G~LA~~~~~-----ev~v~~t---~~ 458 (732)
T TIGR00603 400 -QAHCKLGLTATLVREDDKITDLNFLIG-PKLYEAN----------WMELQKK-GFIANVQCA-----EVWCPMT---PE 458 (732)
T ss_pred -CcCcEEEEeecCcccCCchhhhhhhcC-CeeeecC----------HHHHHhC-CccccceEE-----EEEecCC---HH
Confidence 234679999998322 1223333 2221110 0011100 000000000 0000000 00
Q ss_pred hhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCC
Q 001615 503 HLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGD 582 (1044)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~ 582 (1044)
....++.. ....+..+..+ ....+..+..++.+. ...+.++|||+.....++.+++.|.
T Consensus 459 ~~~~yl~~----------~~~~k~~l~~~--np~K~~~~~~Li~~h--e~~g~kiLVF~~~~~~l~~~a~~L~------- 517 (732)
T TIGR00603 459 FYREYLRE----------NSRKRMLLYVM--NPNKFRACQFLIRFH--EQRGDKIIVFSDNVFALKEYAIKLG------- 517 (732)
T ss_pred HHHHHHHh----------cchhhhHHhhh--ChHHHHHHHHHHHHH--hhcCCeEEEEeCCHHHHHHHHHHcC-------
Confidence 00000000 00000001111 111112222233221 1356799999999998888888763
Q ss_pred CCCeEEEEecCCCChHHHHhhhCCCCCC-CcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHh
Q 001615 583 PNKFLVLPLHGSMPTINQREIFDRPPPN-KRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKA 661 (1044)
Q Consensus 583 ~~~~~i~~lH~~l~~~er~~v~~~f~~g-~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a 661 (1044)
+..+||++++.+|.++++.|+.| ..++||+|+++.+|||+|++++||..+.+.. |+.
T Consensus 518 -----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~g-----------------S~~ 575 (732)
T TIGR00603 518 -----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYG-----------------SRR 575 (732)
T ss_pred -----CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCC-----------------CHH
Confidence 23489999999999999999875 7899999999999999999999999776521 666
Q ss_pred hHHHhcccCCCCCC-cEE-------EEecChhh
Q 001615 662 SAHQRRGRAGRVQP-GVC-------YKLYPRII 686 (1044)
Q Consensus 662 ~~~QR~GRAGR~~~-G~c-------~~L~t~~~ 686 (1044)
.|+||+||++|..+ |.+ |.|.+++.
T Consensus 576 q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 576 QEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred HHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 99999999999954 444 78877653
No 87
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.92 E-value=2.4e-24 Score=261.01 Aligned_cols=375 Identities=17% Similarity=0.163 Sum_probs=240.3
Q ss_pred hcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 001615 278 REKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (1044)
Q Consensus 278 r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~ 357 (1044)
.....+.++|++++.+|..+..|+||||||||||...-.++...+ .+ +.++++|.|.++|..|.+.++..+++..
T Consensus 115 ~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al-~~----~qrviYTsPIKALsNQKyrdl~~~fgdv 189 (1041)
T COG4581 115 EYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALAL-RD----GQRVIYTSPIKALSNQKYRDLLAKFGDV 189 (1041)
T ss_pred hCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHH-Hc----CCceEeccchhhhhhhHHHHHHHHhhhh
Confidence 345677899999999999999999999999999965554444433 32 3469999999999999999999888854
Q ss_pred CCcEEEEEEeccccCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccchhHHHHHHHH--HHcccCCcccEE
Q 001615 358 LGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILR--DLLPRRPDLRLI 434 (1044)
Q Consensus 358 ~g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~~d~ll~~lk--~~~~~~~~~qii 434 (1044)
...||-- ..+-..++.+.++|+|+++|-++|..+. .+.++.+||+||+|- -.|-..+..+ .++.....+++|
T Consensus 190 -~~~vGL~-TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHy---i~D~eRG~VWEE~Ii~lP~~v~~v 264 (1041)
T COG4581 190 -ADMVGLM-TGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHY---IGDRERGVVWEEVIILLPDHVRFV 264 (1041)
T ss_pred -hhhccce-ecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeee---ccccccchhHHHHHHhcCCCCcEE
Confidence 2223322 2244556788999999999999999885 899999999999992 1111111111 223345578999
Q ss_pred EcccCC-ChHHHHhhhC-----CCCeecCCCCccccceeehHHHHHhhhcccCccccccc-cccccccccccchhhhhhh
Q 001615 435 LMSATI-NADLFSKYFG-----NAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQ-GNSRRSRRQDSKKDHLTAL 507 (1044)
Q Consensus 435 lmSATl-~~~~~~~~f~-----~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 507 (1044)
+||||+ |++.|+.|++ ++-++..+.|+.|+..+|... ...+....+...+. .+........ .......
T Consensus 265 ~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~---~~l~~lvde~~~~~~~~~~~a~~~l--~~~~~~~ 339 (1041)
T COG4581 265 FLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVG---KGLFDLVDEKKKFNAENFPSANRSL--SCFSEKV 339 (1041)
T ss_pred EEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecC---Cceeeeecccccchhhcchhhhhhh--hccchhc
Confidence 999998 7788999997 456777888999988877643 11111110000000 0000000000 0000000
Q ss_pred hhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHcccc--------
Q 001615 508 FEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKF-------- 579 (1044)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~-------- 579 (1044)
.+..+....+ +....... ..+..-...-..++.++. ....-++++|+=+++.|+..+..+....+
T Consensus 340 ~~~~~~~~~~--~a~~~~~~----~~~~~~~~~~~~iv~~l~-~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~ 412 (1041)
T COG4581 340 RETDDGDVGR--YARRTKAL----RGSAKGPAGRPEIVNKLD-KDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKER 412 (1041)
T ss_pred cccCcccccc--cccccccc----CCcccccccchHHHhhhh-hhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHH
Confidence 0000000000 00000000 000000000122333333 23456899999999999998887752111
Q ss_pred ------------CCC-CC-------------CeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEE
Q 001615 580 ------------LGD-PN-------------KFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYV 633 (1044)
Q Consensus 580 ------------~~~-~~-------------~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~V 633 (1044)
+.. .. .-.+..||++|-+..+..+...|..|-+||++||.+.+.|+++|.-++|
T Consensus 413 ~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv 492 (1041)
T COG4581 413 AIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVV 492 (1041)
T ss_pred HHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCccccee
Confidence 000 00 1135579999999999999999999999999999999999999965555
Q ss_pred EeCCCCcceeccccccccccccccccHhhHHHhcccCCCC---CCcEEEEecCh
Q 001615 634 VDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV---QPGVCYKLYPR 684 (1044)
Q Consensus 634 Id~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~---~~G~c~~L~t~ 684 (1044)
-+.+.| || .-...|++..+|.|..|||||. ..|..+...+.
T Consensus 493 -~~~l~K---~d------G~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 493 -FTSLSK---FD------GNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred -eeeeEE---ec------CCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 455555 44 3346789999999999999998 46999888543
No 88
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.92 E-value=1.1e-24 Score=232.65 Aligned_cols=303 Identities=16% Similarity=0.175 Sum_probs=185.7
Q ss_pred cEEEEEcccHHHHHHHHHHHHHHhCCC----CC--cEEE-EEEec-cccCCCCccEEEEchHHHHHHHhcCC-CCCccce
Q 001615 331 CNIICTQPRRISAISVAARVSSERGEN----LG--ETVG-YQIRL-ESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSH 401 (1044)
Q Consensus 331 ~~ilv~~P~r~la~qva~rv~~~~~~~----~g--~~vg-y~ir~-~~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~ 401 (1044)
+..+++.|.|+||.|..+.+.++.-.. +. ..+| ...|. -.....+++|+|.|||+|++.+..+. .|..+.+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 578999999999999999776653221 11 1112 11111 12234689999999999999998877 8899999
Q ss_pred EEechhhhc--cchhHHHHHHHHHHccc---CCcccEEEcccCCCh---HHHHhhhCCCC-eecCCCC-ccccceeehHH
Q 001615 402 LLVDEIHER--GMNEDFLLIILRDLLPR---RPDLRLILMSATINA---DLFSKYFGNAP-TVHIPGL-TFPVTDLFLED 471 (1044)
Q Consensus 402 lIiDEaHeR--~~~~d~ll~~lk~~~~~---~~~~qiilmSATl~~---~~~~~~f~~~~-~i~v~g~-~~pv~~~~l~~ 471 (1044)
+|+||++-. -.++|++--+-..+-+. ...+|.+++|||+.. ..+.+-.-.-| .+...|. ..|-+.+...
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv- 445 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVV- 445 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccce-
Confidence 999999942 14566665554444332 235899999999732 22221110000 1111110 0010000000
Q ss_pred HHHhhhcccCccccccccccccccccccchhhhhhhhhccc--ccccc--cchhhhh-HHHHHhhhhhhhchHHHHHHHH
Q 001615 472 VLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVD--IDSNY--KNYRAST-RASLEAWSAEQIDLGLVESTIE 546 (1044)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~-~~~~~~~~~~~~~~~li~~~l~ 546 (1044)
.......+... ..+.+.++..+ ...+. ...++.. .+....+. -+..+.
T Consensus 446 ------~lv~p~~d~sw-------------~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilk--------gEy~v~ 498 (725)
T KOG0349|consen 446 ------KLVCPSVDGSW-------------CDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILK--------GEYGVV 498 (725)
T ss_pred ------eecCCccCccH-------------HHHhhhhccCCcccccccccccCCCCChhhhhHHhc--------Cchhhh
Confidence 00000000000 00000000000 00000 0000000 00000000 001122
Q ss_pred HHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccC
Q 001615 547 YICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSIT 626 (1044)
Q Consensus 547 ~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~Gid 626 (1044)
.|. .....+.+|||.|+.+++.|.+++.+.. ...+.++++||++.++||+.-++.|+.+..|.||||++|++|||
T Consensus 499 ai~-~h~mdkaiifcrtk~dcDnLer~~~qkg----g~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargld 573 (725)
T KOG0349|consen 499 AIR-RHAMDKAIIFCRTKQDCDNLERMMNQKG----GKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLD 573 (725)
T ss_pred hhh-hhccCceEEEEeccccchHHHHHHHHcC----CccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhcccc
Confidence 222 2345678999999999999999998642 25789999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC-CCcEEEEecCh
Q 001615 627 IDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPR 684 (1044)
Q Consensus 627 Ip~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~ 684 (1044)
|-++-|+||.-+|.++. +|+||+||.||+ +-|.++.|...
T Consensus 574 i~g~p~~invtlpd~k~------------------nyvhrigrvgraermglaislvat 614 (725)
T KOG0349|consen 574 ITGLPFMINVTLPDDKT------------------NYVHRIGRVGRAERMGLAISLVAT 614 (725)
T ss_pred ccCCceEEEEecCcccc------------------hhhhhhhccchhhhcceeEEEeec
Confidence 99999999999999766 999999999999 78999998753
No 89
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.92 E-value=2.2e-24 Score=230.35 Aligned_cols=310 Identities=18% Similarity=0.194 Sum_probs=208.7
Q ss_pred HHHHHHHHHH-HcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC---Cc
Q 001615 285 KMKAEFLKAV-AENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENL---GE 360 (1044)
Q Consensus 285 ~~Q~~~i~~i-~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~---g~ 360 (1044)
+.|++++..+ ..++||.|+.|||+|||+++-+|.|-+ ....||+.|.-+|.......+... ...+ ..
T Consensus 23 ~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~--------~gITIV~SPLiALIkDQiDHL~~L-KVp~~SLNS 93 (641)
T KOG0352|consen 23 RLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH--------GGITIVISPLIALIKDQIDHLKRL-KVPCESLNS 93 (641)
T ss_pred hHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh--------CCeEEEehHHHHHHHHHHHHHHhc-CCchhHhcc
Confidence 4688888775 667899999999999999998887764 237788899988877655554332 1111 11
Q ss_pred EEEEEEe-----ccccCCCCccEEEEchHH--------HHHHHhcCCCCCccceEEechhhhcc-chhHHHHHHHH--HH
Q 001615 361 TVGYQIR-----LESKRSAQTRLLFCTTGV--------LLRQLVEDPDLSCVSHLLVDEIHERG-MNEDFLLIILR--DL 424 (1044)
Q Consensus 361 ~vgy~ir-----~~~~~~~~~~I~v~T~g~--------Ll~~l~~~~~L~~~~~lIiDEaHeR~-~~~d~ll~~lk--~~ 424 (1044)
...-+-| ...+..++++++|.||++ ||+-|.+ -.-++++|+||||.-+ +..||-+..|+ .+
T Consensus 94 KlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~---r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~L 170 (641)
T KOG0352|consen 94 KLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLAN---RDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSL 170 (641)
T ss_pred hhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhh---hceeeeEEechhhhHhhhccccCcchhhhhhH
Confidence 1111101 112334578999999987 3333332 3457899999999733 33454444433 23
Q ss_pred cccCCcccEEEcccCCChHHHHhhhC----CCCeecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccc
Q 001615 425 LPRRPDLRLILMSATINADLFSKYFG----NAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSK 500 (1044)
Q Consensus 425 ~~~~~~~qiilmSATl~~~~~~~~f~----~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (1044)
....++.--|.++||.+++...+.|. ..|+-.....+|.-..+|-..+
T Consensus 171 RS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~---------------------------- 222 (641)
T KOG0352|consen 171 RSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHM---------------------------- 222 (641)
T ss_pred HhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHH----------------------------
Confidence 34567888999999998876544332 2232222222222211211000
Q ss_pred hhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHH---------hccCCCCEEEEeCCHHHHHHHH
Q 001615 501 KDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYIC---------RHEGDGAILVFLTGWNDISKLL 571 (1044)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~---------~~~~~g~iLVFl~~~~~i~~l~ 571 (1044)
+++... ++..+.+.-.+-+ .....|.-||||.|+++++.++
T Consensus 223 -----------------K~~I~D-------------~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~A 272 (641)
T KOG0352|consen 223 -----------------KSFITD-------------CLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVA 272 (641)
T ss_pred -----------------HHHhhh-------------HhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHH
Confidence 000000 0001111111111 0123578999999999999999
Q ss_pred HHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceecccccccc
Q 001615 572 DQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLA 651 (1044)
Q Consensus 572 ~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~ 651 (1044)
-.|.. .++....+|++|...||.+|-+.+.++...||+||+...+|+|-|+|++||+.+.++
T Consensus 273 I~l~~-------~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~q----------- 334 (641)
T KOG0352|consen 273 IMLEI-------AGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQ----------- 334 (641)
T ss_pred HHhhh-------cCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchh-----------
Confidence 99876 577888899999999999999999999999999999999999999999999999998
Q ss_pred ccccccccHhhHHHhcccCCCC-CCcEEEEecChhhHhh
Q 001615 652 CLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIHDA 689 (1044)
Q Consensus 652 ~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~~~~ 689 (1044)
+.|-|.|-.|||||. .+..|-..|++++-+.
T Consensus 335 -------n~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 335 -------NLAGYYQESGRAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred -------hhHHHHHhccccccCCCccceeeeecccchHH
Confidence 666999999999999 6788888888876553
No 90
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.91 E-value=2.5e-23 Score=246.68 Aligned_cols=360 Identities=18% Similarity=0.185 Sum_probs=212.2
Q ss_pred cCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC
Q 001615 279 EKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENL 358 (1044)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~ 358 (1044)
-.+.+|++|......+..|+ |..++||+|||+++.++++-..+. +..+.|++|+++||.|.++.+.... ..+
T Consensus 53 lg~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----G~~V~VvTpt~~LA~qdae~~~~l~-~~L 124 (745)
T TIGR00963 53 LGMRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT-----GKGVHVVTVNDYLAQRDAEWMGQVY-RFL 124 (745)
T ss_pred hCCCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh-----CCCEEEEcCCHHHHHHHHHHHHHHh-ccC
Confidence 34566677766666666665 899999999999999998655543 2358899999999999998887654 346
Q ss_pred CcEEEEEEeccc----cCCCCccEEEEchHHH-HHHHhcCC-------CCCccceEEechhhhccchhHHHHHHHHHHcc
Q 001615 359 GETVGYQIRLES----KRSAQTRLLFCTTGVL-LRQLVEDP-------DLSCVSHLLVDEIHERGMNEDFLLIILRDLLP 426 (1044)
Q Consensus 359 g~~vgy~ir~~~----~~~~~~~I~v~T~g~L-l~~l~~~~-------~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~ 426 (1044)
|.+||.-..... +..-.++|+|+||+.| .++|..+. .+.++.++||||+|...+|.---..+++ .
T Consensus 125 GLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiis---g 201 (745)
T TIGR00963 125 GLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIIS---G 201 (745)
T ss_pred CCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhc---C
Confidence 777776543211 1223579999999999 88876651 5788999999999953332211111111 0
Q ss_pred cCCcccEEEcccCCCh-------------------------HHHHhhhCCCCeecCCCCcccc----ceeehHHHHH---
Q 001615 427 RRPDLRLILMSATINA-------------------------DLFSKYFGNAPTVHIPGLTFPV----TDLFLEDVLE--- 474 (1044)
Q Consensus 427 ~~~~~qiilmSATl~~-------------------------~~~~~~f~~~~~i~v~g~~~pv----~~~~l~~~~~--- 474 (1044)
..+....+.|+||.=+ +...++|+-.. .|.. -.+++...+.
T Consensus 202 ~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~-------ly~~~~~~~~~~i~~Al~A~~ 274 (745)
T TIGR00963 202 PAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDN-------LYDLENSPLIHYINNALKAKE 274 (745)
T ss_pred CCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCcc-------ccChhhhHHHHHHHHHHHHHH
Confidence 0011222334443211 12233332111 1111 0111111111
Q ss_pred ----hhhcccCcc----ccccccccccccccccchhhhhhhhh---cccccc-----------cc-cchh---------h
Q 001615 475 ----KTRYKMNSK----LDSFQGNSRRSRRQDSKKDHLTALFE---DVDIDS-----------NY-KNYR---------A 522 (1044)
Q Consensus 475 ----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----------~~-~~~~---------~ 522 (1044)
...|.+... .+.+.+.... ...-.+-+.++++ ...+.. +| ..|. .
T Consensus 275 l~~~d~dYiV~d~~V~ivD~~TGR~~~---gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~ 351 (745)
T TIGR00963 275 LFEKDVDYIVRDGEVVIVDEFTGRIME---GRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAK 351 (745)
T ss_pred HHhcCCcEEEECCEEEEEECCCCcCCC---CCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcH
Confidence 011111110 0111111100 0001122222221 111110 00 0010 0
Q ss_pred hhHHHHHhhh------------------hhh---hchHHHHHHHHHHHh-ccCCCCEEEEeCCHHHHHHHHHHHHccccC
Q 001615 523 STRASLEAWS------------------AEQ---IDLGLVESTIEYICR-HEGDGAILVFLTGWNDISKLLDQIKVNKFL 580 (1044)
Q Consensus 523 ~~~~~~~~~~------------------~~~---~~~~li~~~l~~i~~-~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~ 580 (1044)
.....+..+- .+. ...+...+++..+.+ ...+.++||||.+.+.++.+.+.|..
T Consensus 352 te~~E~~~iY~l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~---- 427 (745)
T TIGR00963 352 TEEEEFEKIYNLEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKE---- 427 (745)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH----
Confidence 0000011000 000 011233344444422 24567999999999999999999987
Q ss_pred CCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCC-------eEEEEeCCCCcceecccccccccc
Q 001615 581 GDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDD-------VVYVVDCGKAKETSYDALNKLACL 653 (1044)
Q Consensus 581 ~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~-------V~~VId~g~~k~~~yd~~~~~~~l 653 (1044)
.++....+|+. +.+|+..+..|..+...|+||||+|+||+||+. ..|||++.+|.
T Consensus 428 ---~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~------------- 489 (745)
T TIGR00963 428 ---RGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHE------------- 489 (745)
T ss_pred ---cCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCC-------------
Confidence 45667789998 788899999999999999999999999999998 55999999999
Q ss_pred ccccccHhhHHHhcccCCCC-CCcEEEEecChhh
Q 001615 654 LPSWISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (1044)
Q Consensus 654 ~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~ 686 (1044)
|+..+.||+|||||. .||.+..+.+.++
T Consensus 490 -----s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 490 -----SRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred -----cHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 555999999999999 8999998888654
No 91
>PRK09694 helicase Cas3; Provisional
Probab=99.91 E-value=6.7e-23 Score=251.77 Aligned_cols=326 Identities=18% Similarity=0.210 Sum_probs=189.1
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHh----C
Q 001615 280 KLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSER----G 355 (1044)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~----~ 355 (1044)
...++++|..+.........+||.||||+|||.++..++.. +... +...+|++..||++++.++++|+.+.. .
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~-l~~~--~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~ 360 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWR-LIDQ--GLADSIIFALPTQATANAMLSRLEALASKLFP 360 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHH-HHHh--CCCCeEEEECcHHHHHHHHHHHHHHHHHHhcC
Confidence 34678999988665556778999999999999887665543 3332 224589999999999999999997632 1
Q ss_pred -CCCCcEEEEEE---ec------c--------------------ccCCCCccEEEEchHHHHHHHhcCC--CCCc----c
Q 001615 356 -ENLGETVGYQI---RL------E--------------------SKRSAQTRLLFCTTGVLLRQLVEDP--DLSC----V 399 (1044)
Q Consensus 356 -~~~g~~vgy~i---r~------~--------------------~~~~~~~~I~v~T~g~Ll~~l~~~~--~L~~----~ 399 (1044)
..+...-|... .+ . .+..--..|+|+|...++..+...+ .+.. -
T Consensus 361 ~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~ 440 (878)
T PRK09694 361 SPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGR 440 (878)
T ss_pred CCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhcc
Confidence 11111111100 00 0 0000126899999876664443322 2222 2
Q ss_pred ceEEechhhhccchhHH-HHHHHHHHcccCCcccEEEcccCCChHHHHhhh---CCCCeecCCCCccccceeehHHHHHh
Q 001615 400 SHLLVDEIHERGMNEDF-LLIILRDLLPRRPDLRLILMSATINADLFSKYF---GNAPTVHIPGLTFPVTDLFLEDVLEK 475 (1044)
Q Consensus 400 ~~lIiDEaHeR~~~~d~-ll~~lk~~~~~~~~~qiilmSATl~~~~~~~~f---~~~~~i~v~g~~~pv~~~~l~~~~~~ 475 (1044)
++|||||+|--+..+.- +..+++.+.. ...++|+||||++...-.+++ +....+ .....||.-...-.. ..
T Consensus 441 svvIiDEVHAyD~ym~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~-~~~~~YPlvt~~~~~--~~ 515 (878)
T PRK09694 441 SVLIVDEVHAYDAYMYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPV-ELSSAYPLITWRGVN--GA 515 (878)
T ss_pred CeEEEechhhCCHHHHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhcccccc-ccccccccccccccc--cc
Confidence 58999999976555543 3344444333 246799999999876543332 221111 111223321110000 00
Q ss_pred hhcccCccccccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhc-cCC
Q 001615 476 TRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRH-EGD 554 (1044)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~-~~~ 554 (1044)
..+......... .... .-.+.... .....+ ...++..+.+. ..+
T Consensus 516 ~~~~~~~~~~~~-----~~~~----~v~v~~~~-----------------------~~~~~~---~~~~l~~i~~~~~~g 560 (878)
T PRK09694 516 QRFDLSAHPEQL-----PARF----TIQLEPIC-----------------------LADMLP---DLTLLQRMIAAANAG 560 (878)
T ss_pred eeeecccccccc-----Ccce----EEEEEeec-----------------------cccccC---HHHHHHHHHHHHhcC
Confidence 000000000000 0000 00000000 000000 01122222221 346
Q ss_pred CCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHH----HhhhCCC-CCCC---cEEEEeecccccccC
Q 001615 555 GAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQ----REIFDRP-PPNK---RKIVLATNIAESSIT 626 (1044)
Q Consensus 555 g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er----~~v~~~f-~~g~---~kIlvaTniae~Gid 626 (1044)
+++|||++|.+.+..+++.|++... ....+..+||.++..+| +++++.| ++|+ .+|||||+|+|+|||
T Consensus 561 ~~vLVf~NTV~~Aq~ly~~L~~~~~----~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLD 636 (878)
T PRK09694 561 AQVCLICNLVDDAQKLYQRLKELNN----TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLD 636 (878)
T ss_pred CEEEEEECCHHHHHHHHHHHHhhCC----CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheee
Confidence 7899999999999999999986311 24578999999999988 4566777 5665 479999999999999
Q ss_pred CCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC
Q 001615 627 IDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV 673 (1044)
Q Consensus 627 Ip~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~ 673 (1044)
| |+++||....|- ++++||+||+||.
T Consensus 637 I-d~DvlItdlaPi--------------------dsLiQRaGR~~R~ 662 (878)
T PRK09694 637 L-DFDWLITQLCPV--------------------DLLFQRLGRLHRH 662 (878)
T ss_pred c-CCCeEEECCCCH--------------------HHHHHHHhccCCC
Confidence 9 588888754442 3899999999997
No 92
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.90 E-value=3.8e-23 Score=252.70 Aligned_cols=317 Identities=15% Similarity=0.160 Sum_probs=196.8
Q ss_pred CCchHHHHHHHHHHHcC---CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 001615 281 LPAFKMKAEFLKAVAEN---QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (1044)
Q Consensus 281 lpi~~~Q~~~i~~i~~~---~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~ 357 (1044)
..++++|.++++.+.++ +++++.|+||||||..+.+++.+.+. . +.++|+++|+++|+.|+++++.+.++..
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~-~----g~~vLvLvPt~~L~~Q~~~~l~~~fg~~ 217 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA-Q----GKQALVLVPEIALTPQMLARFRARFGAP 217 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH-c----CCeEEEEeCcHHHHHHHHHHHHHHhCCC
Confidence 45788999999999874 78999999999999988877666542 2 3589999999999999999999877654
Q ss_pred CCcEEEEEEec------cccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHH-----HHHHHHHHcc
Q 001615 358 LGETVGYQIRL------ESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDF-----LLIILRDLLP 426 (1044)
Q Consensus 358 ~g~~vgy~ir~------~~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~-----ll~~lk~~~~ 426 (1044)
+....|..-.. ........+|+|+|++.+. ..+.++++|||||+|+-+...+- ...+ ..+..
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v-a~~ra 290 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL-AVVRA 290 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc------ccccCCCEEEEECCCccccccCcCCCCcHHHH-HHHHh
Confidence 32222211100 0112235789999998764 24688999999999964432220 0111 11122
Q ss_pred cCCcccEEEcccCCChHHHHhhhC-CCCeecCCCCc----cccceeehHHHHHhhhcccCccccccccccccccccccch
Q 001615 427 RRPDLRLILMSATINADLFSKYFG-NAPTVHIPGLT----FPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKK 501 (1044)
Q Consensus 427 ~~~~~qiilmSATl~~~~~~~~f~-~~~~i~v~g~~----~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (1044)
...+.++|++|||...+.+..... ....+..+.+. .|. ...++ .-..... . ..
T Consensus 291 ~~~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p~-v~~id-~~~~~~~----------~----------~~ 348 (679)
T PRK05580 291 KLENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLPE-VEIID-MRELLRG----------E----------NG 348 (679)
T ss_pred hccCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCCe-EEEEe-chhhhhh----------c----------cc
Confidence 345789999999998776654322 22223332221 111 11110 0000000 0 00
Q ss_pred hhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCC------------------
Q 001615 502 DHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTG------------------ 563 (1044)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~------------------ 563 (1044)
..+... +.+.+...+ ..+..+|||+|.
T Consensus 349 --------------------------------~~ls~~-l~~~i~~~l--~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C 393 (679)
T PRK05580 349 --------------------------------SFLSPP-LLEAIKQRL--ERGEQVLLFLNRRGYAPFLLCRDCGWVAEC 393 (679)
T ss_pred --------------------------------CCCCHH-HHHHHHHHH--HcCCeEEEEEcCCCCCCceEhhhCcCccCC
Confidence 000000 111111111 122345555553
Q ss_pred ------------------------------------------HHHHHHHHHHHHccccCCCCCCeEEEEecCCCCh--HH
Q 001615 564 ------------------------------------------WNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPT--IN 599 (1044)
Q Consensus 564 ------------------------------------------~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~--~e 599 (1044)
...++.+++.|.... .+..+..+|+++.+ ++
T Consensus 394 ~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~f-----p~~~v~~~~~d~~~~~~~ 468 (679)
T PRK05580 394 PHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELF-----PEARILRIDRDTTRRKGA 468 (679)
T ss_pred CCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhC-----CCCcEEEEeccccccchh
Confidence 234556666665421 35678899999974 57
Q ss_pred HHhhhCCCCCCCcEEEEeecccccccCCCCeEEE--EeCCCCcc-eeccccccccccccccccHhhHHHhcccCCCC-CC
Q 001615 600 QREIFDRPPPNKRKIVLATNIAESSITIDDVVYV--VDCGKAKE-TSYDALNKLACLLPSWISKASAHQRRGRAGRV-QP 675 (1044)
Q Consensus 600 r~~v~~~f~~g~~kIlvaTniae~GidIp~V~~V--Id~g~~k~-~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~ 675 (1044)
++++++.|++|+..|||+|+++++|+|+|+|++| +|.+.+-. ..|+.... .-+.|.|++|||||. .+
T Consensus 469 ~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er---------~~~~l~q~~GRagR~~~~ 539 (679)
T PRK05580 469 LEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASER---------TFQLLTQVAGRAGRAEKP 539 (679)
T ss_pred HHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHH---------HHHHHHHHHhhccCCCCC
Confidence 8899999999999999999999999999999988 56665532 12222211 123799999999997 78
Q ss_pred cEEEE
Q 001615 676 GVCYK 680 (1044)
Q Consensus 676 G~c~~ 680 (1044)
|.++.
T Consensus 540 g~vii 544 (679)
T PRK05580 540 GEVLI 544 (679)
T ss_pred CEEEE
Confidence 98884
No 93
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.90 E-value=1.3e-21 Score=247.10 Aligned_cols=387 Identities=18% Similarity=0.255 Sum_probs=219.6
Q ss_pred CCchHHHHHHHHHHHc-----CCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhC
Q 001615 281 LPAFKMKAEFLKAVAE-----NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERG 355 (1044)
Q Consensus 281 lpi~~~Q~~~i~~i~~-----~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~ 355 (1044)
..+.+||.+++..+.+ .+..+|+++||||||..+...+ ..++... ...+||+++||++|+.|..+.+.....
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li-~~L~~~~--~~~rVLfLvDR~~L~~Qa~~~F~~~~~ 488 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALM-YRLLKAK--RFRRILFLVDRSALGEQAEDAFKDTKI 488 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHH-HHHHhcC--ccCeEEEEecHHHHHHHHHHHHHhccc
Confidence 4578899999987752 4679999999999996544433 3343322 245899999999999999988765421
Q ss_pred CCCCcEE--EEEEe-cc-ccCCCCccEEEEchHHHHHHHhcC------CCCCccceEEechhhhccchhHH---------
Q 001615 356 ENLGETV--GYQIR-LE-SKRSAQTRLLFCTTGVLLRQLVED------PDLSCVSHLLVDEIHERGMNEDF--------- 416 (1044)
Q Consensus 356 ~~~g~~v--gy~ir-~~-~~~~~~~~I~v~T~g~Ll~~l~~~------~~L~~~~~lIiDEaHeR~~~~d~--------- 416 (1044)
..+..+ -|.+. .. .......+|+|+|.+.|.+.+... +.+..+++||+|||| |+...|-
T Consensus 489 -~~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~ 566 (1123)
T PRK11448 489 -EGDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQF 566 (1123)
T ss_pred -ccccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhcc
Confidence 111111 01111 11 112235789999999998875421 256889999999999 7642110
Q ss_pred -----HHHHHHHHcccCCcccEEEcccCCChHHHHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCc-cccccccc
Q 001615 417 -----LLIILRDLLPRRPDLRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNS-KLDSFQGN 490 (1044)
Q Consensus 417 -----ll~~lk~~~~~~~~~qiilmSATl~~~~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~-~~~~~~~~ 490 (1044)
...-.+.++.. .+...|+||||+... -.++|+. | +..+-+.+.+.... .+.. ....+...
T Consensus 567 ~~~~~~~~~yr~iL~y-FdA~~IGLTATP~r~-t~~~FG~-p----------v~~Ysl~eAI~DG~-Lv~~~~p~~i~t~ 632 (1123)
T PRK11448 567 RDQLDYVSKYRRVLDY-FDAVKIGLTATPALH-TTEIFGE-P----------VYTYSYREAVIDGY-LIDHEPPIRIETR 632 (1123)
T ss_pred chhhhHHHHHHHHHhh-cCccEEEEecCCccc-hhHHhCC-e----------eEEeeHHHHHhcCC-cccCcCCEEEEEE
Confidence 01233445543 356789999998643 3456763 2 33333333333211 1100 00000000
Q ss_pred cccccccccchhh---hhhhhhcccccccccchhhhhHHHHHhhhhhhhch----HHHHHHHHHHHhccCCCCEEEEeCC
Q 001615 491 SRRSRRQDSKKDH---LTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDL----GLVESTIEYICRHEGDGAILVFLTG 563 (1044)
Q Consensus 491 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~li~~~l~~i~~~~~~g~iLVFl~~ 563 (1044)
...........+. +.....+.+. ..+..........++...+.. ..+..++.++ ....++++||||.+
T Consensus 633 ~~~~gi~~~~~e~~~~~~~~~~~i~~----~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l-~~~~~~KtiIF~~s 707 (1123)
T PRK11448 633 LSQEGIHFEKGEEVEVINTQTGEIDL----ATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYL-DPTGEGKTLIFAAT 707 (1123)
T ss_pred eccccccccccchhhhcchhhhhhhh----ccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH-hccCCCcEEEEEcC
Confidence 0000000000000 0000000000 000000000011111111111 1122333333 23345899999999
Q ss_pred HHHHHHHHHHHHcccc--CCCCCCeEEEEecCCCChHHHHhhhCCCCCCCc-EEEEeecccccccCCCCeEEEEeCCCCc
Q 001615 564 WNDISKLLDQIKVNKF--LGDPNKFLVLPLHGSMPTINQREIFDRPPPNKR-KIVLATNIAESSITIDDVVYVVDCGKAK 640 (1044)
Q Consensus 564 ~~~i~~l~~~L~~~~~--~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~-kIlvaTniae~GidIp~V~~VId~g~~k 640 (1044)
.++++.+++.|..... .+......+..+||+.+ ++..+++.|+++.. +|+|+++++.||+|+|.|.+||....++
T Consensus 708 ~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvk 785 (1123)
T PRK11448 708 DAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVR 785 (1123)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCC
Confidence 9999999998875310 01112334566888876 45678999999876 7999999999999999999999998888
Q ss_pred ceeccccccccccccccccHhhHHHhcccCCCCCC--c-EEEEecChh-hHhhcCCCC--CCccc--cCChHHHHHHHH
Q 001615 641 ETSYDALNKLACLLPSWISKASAHQRRGRAGRVQP--G-VCYKLYPRI-IHDAMLPYQ--LPEIL--RTPLQELCLHIK 711 (1044)
Q Consensus 641 ~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~~--G-~c~~L~t~~-~~~~l~~~~--~pei~--r~~L~~~~L~~k 711 (1044)
|+..|+||+||+.|..+ | .++.+|.-. .++.+.+.. .|.+. ..+|.+++-.+.
T Consensus 786 ------------------S~~lf~QmIGRgtR~~~~~~K~~f~I~D~vg~~~~l~~~~~~~p~~~~~~~~l~~l~~~~~ 846 (1123)
T PRK11448 786 ------------------SRILYEQMLGRATRLCPEIGKTHFRIFDAVDIYEALESVTTMKPVVVNPNISLEQLVNELT 846 (1123)
T ss_pred ------------------CHHHHHHHHhhhccCCccCCCceEEEEehHHHHHhccccccCCccccCCCCCHHHHHHHHh
Confidence 77799999999999976 4 356666543 344444422 34432 356666654443
No 94
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.89 E-value=6.6e-22 Score=230.90 Aligned_cols=323 Identities=16% Similarity=0.144 Sum_probs=195.8
Q ss_pred cCCCchHHHHHHHHHHHc----CCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHh
Q 001615 279 EKLPAFKMKAEFLKAVAE----NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSER 354 (1044)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~----~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~ 354 (1044)
....+.+||+++++++.+ ++..+|+.|||+|||..+...+-+. ..++||++||++|+.|.+++..+..
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~--------~~~~Lvlv~~~~L~~Qw~~~~~~~~ 104 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL--------KRSTLVLVPTKELLDQWAEALKKFL 104 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh--------cCCEEEEECcHHHHHHHHHHHHHhc
Confidence 445678999999999988 8999999999999996665554442 1249999999999999998887776
Q ss_pred CCC--CCcEEEEEEeccccCCCCccEEEEchHHHHHH-HhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcc
Q 001615 355 GEN--LGETVGYQIRLESKRSAQTRLLFCTTGVLLRQ-LVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDL 431 (1044)
Q Consensus 355 ~~~--~g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~-l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~ 431 (1044)
... .|..-|-... ..+ ..|+|+|...+.+. .......+.+++||+||||+... +....++..+...++
T Consensus 105 ~~~~~~g~~~~~~~~----~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a--~~~~~~~~~~~~~~~-- 175 (442)
T COG1061 105 LLNDEIGIYGGGEKE----LEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPA--PSYRRILELLSAAYP-- 175 (442)
T ss_pred CCccccceecCceec----cCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCc--HHHHHHHHhhhcccc--
Confidence 653 2222221111 111 46999999999886 22222344799999999997433 222333333322222
Q ss_pred cEEEcccCCChH---H---HHhhhCCCCeecCC-------CCccccceeehHHHHHhhhcccCccccccccccccccccc
Q 001615 432 RLILMSATINAD---L---FSKYFGNAPTVHIP-------GLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQD 498 (1044)
Q Consensus 432 qiilmSATl~~~---~---~~~~f~~~~~i~v~-------g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (1044)
+++||||+... . +..+++ ..+..+. |..-|......... . .... .
T Consensus 176 -~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~--------------~---t~~~---~ 233 (442)
T COG1061 176 -RLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVT--------------L---TEDE---E 233 (442)
T ss_pred -eeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEec--------------c---chHH---H
Confidence 99999997422 1 222232 1111111 11111110000000 0 0000 0
Q ss_pred cchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhcc-CCCCEEEEeCCHHHHHHHHHHHHcc
Q 001615 499 SKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHE-GDGAILVFLTGWNDISKLLDQIKVN 577 (1044)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~-~~g~iLVFl~~~~~i~~l~~~L~~~ 577 (1044)
.........+.+ +.... ......................+..+.... ...++|||+....++..++..+..
T Consensus 234 ~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~- 305 (442)
T COG1061 234 REYAKESARFRE------LLRAR-GTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLA- 305 (442)
T ss_pred HHhhhhhhhhhh------hhhhh-hhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcC-
Confidence 000000000000 00000 000000000000111111222222222222 466899999999999999999875
Q ss_pred ccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceecccccccccccccc
Q 001615 578 KFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSW 657 (1044)
Q Consensus 578 ~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~ 657 (1044)
.+. +..+.+..+..+|..+++.|+.|..++|+++.|+.+|+|+|+++++|...-.+
T Consensus 306 ------~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~----------------- 361 (442)
T COG1061 306 ------PGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTG----------------- 361 (442)
T ss_pred ------CCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCC-----------------
Confidence 233 77799999999999999999999999999999999999999999999877666
Q ss_pred ccHhhHHHhcccCCCC
Q 001615 658 ISKASAHQRRGRAGRV 673 (1044)
Q Consensus 658 iS~a~~~QR~GRAGR~ 673 (1044)
|+..|.||+||.=|.
T Consensus 362 -S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 362 -SRRLFIQRLGRGLRP 376 (442)
T ss_pred -cHHHHHHHhhhhccC
Confidence 777999999999995
No 95
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.89 E-value=6.8e-23 Score=250.55 Aligned_cols=308 Identities=19% Similarity=0.173 Sum_probs=211.3
Q ss_pred hHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEE
Q 001615 284 FKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVG 363 (1044)
Q Consensus 284 ~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vg 363 (1044)
.+-|.++|.+++.|++++|..|||.||++++.+|.+-. ++..||+.|-..|..-+...+.. .+......-+
T Consensus 266 R~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~--------~gitvVISPL~SLm~DQv~~L~~-~~I~a~~L~s 336 (941)
T KOG0351|consen 266 RPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL--------GGVTVVISPLISLMQDQVTHLSK-KGIPACFLSS 336 (941)
T ss_pred ChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc--------CCceEEeccHHHHHHHHHHhhhh-cCcceeeccc
Confidence 35799999999999999999999999998887775542 23789999999998765544421 2221111111
Q ss_pred EEEe------c--cccCCCCccEEEEchHHHHHHHh---cCCCCCc---cceEEechhhhcc-chhHHHHHH--HHHHcc
Q 001615 364 YQIR------L--ESKRSAQTRLLFCTTGVLLRQLV---EDPDLSC---VSHLLVDEIHERG-MNEDFLLII--LRDLLP 426 (1044)
Q Consensus 364 y~ir------~--~~~~~~~~~I~v~T~g~Ll~~l~---~~~~L~~---~~~lIiDEaHeR~-~~~d~ll~~--lk~~~~ 426 (1044)
.+.. + .....+..+|+|.||+.+...-. ....|.. +..+||||||+-+ +-.||-... +..+..
T Consensus 337 ~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~ 416 (941)
T KOG0351|consen 337 IQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRI 416 (941)
T ss_pred cccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHh
Confidence 1111 0 01112367899999988654211 1113333 8999999999732 334554443 233445
Q ss_pred cCCcccEEEcccCCChHHHHhh---hC--CCCeecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccch
Q 001615 427 RRPDLRLILMSATINADLFSKY---FG--NAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKK 501 (1044)
Q Consensus 427 ~~~~~qiilmSATl~~~~~~~~---f~--~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (1044)
..+..-+|.+|||.....-.+- ++ ++.++.- . |.-...|++ + ..+.
T Consensus 417 ~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~-s--fnR~NL~ye---------V-----------------~~k~ 467 (941)
T KOG0351|consen 417 RFPGVPFIALTATATERVREDVIRSLGLRNPELFKS-S--FNRPNLKYE---------V-----------------SPKT 467 (941)
T ss_pred hCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecc-c--CCCCCceEE---------E-----------------Eecc
Confidence 6677899999999866543322 22 1211100 0 000000000 0 0000
Q ss_pred hhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCC
Q 001615 502 DHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLG 581 (1044)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~ 581 (1044)
+.+.....+..+-...+.+.+||+|.++.+++.++..|+.
T Consensus 468 -----------------------------------~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~----- 507 (941)
T KOG0351|consen 468 -----------------------------------DKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRS----- 507 (941)
T ss_pred -----------------------------------CccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHH-----
Confidence 0011223444455556788999999999999999999997
Q ss_pred CCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHh
Q 001615 582 DPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKA 661 (1044)
Q Consensus 582 ~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a 661 (1044)
.+.....+|++|+..+|+.|-+.|-.++.+|||||=...+|||.|||++||++++|| |-+
T Consensus 508 --~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPk------------------s~E 567 (941)
T KOG0351|consen 508 --LGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPK------------------SFE 567 (941)
T ss_pred --hchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCch------------------hHH
Confidence 456778899999999999999999999999999999999999999999999999999 444
Q ss_pred hHHHhcccCCCC-CCcEEEEecChhhHhh
Q 001615 662 SAHQRRGRAGRV-QPGVCYKLYPRIIHDA 689 (1044)
Q Consensus 662 ~~~QR~GRAGR~-~~G~c~~L~t~~~~~~ 689 (1044)
.|.|-+|||||. .+-.|..||+-.++..
T Consensus 568 ~YYQE~GRAGRDG~~s~C~l~y~~~D~~~ 596 (941)
T KOG0351|consen 568 GYYQEAGRAGRDGLPSSCVLLYGYADISE 596 (941)
T ss_pred HHHHhccccCcCCCcceeEEecchhHHHH
Confidence 999999999999 7899999999877654
No 96
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=2.1e-22 Score=202.18 Aligned_cols=277 Identities=14% Similarity=0.228 Sum_probs=181.6
Q ss_pred chHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHH---HHHHHhCCCCC
Q 001615 283 AFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAA---RVSSERGENLG 359 (1044)
Q Consensus 283 i~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~---rv~~~~~~~~g 359 (1044)
+..+|.++|+...-|-+++..|..|-|||..|.+.-|+.+-. ....+.++|+..||+||-|+.+ |+++.+.. +.
T Consensus 65 psevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep--v~g~vsvlvmchtrelafqi~~ey~rfskymP~-vk 141 (387)
T KOG0329|consen 65 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP--VDGQVSVLVMCHTRELAFQISKEYERFSKYMPS-VK 141 (387)
T ss_pred chHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC--CCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCC-ce
Confidence 345899999988889999999999999999998888887532 2335689999999999999974 45555432 22
Q ss_pred cEEEE---EEecccc-CCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEE
Q 001615 360 ETVGY---QIRLESK-RSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLI 434 (1044)
Q Consensus 360 ~~vgy---~ir~~~~-~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qii 434 (1044)
..|-| .+..+.. ...-.+|+|+|||+++.+.++.. .|+++.|.|+|||+..--..|....+-........+-|+.
T Consensus 142 vaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvm 221 (387)
T KOG0329|consen 142 VSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVM 221 (387)
T ss_pred EEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccceee
Confidence 33323 2433322 23367999999999999998876 8999999999999953222333333222222244578999
Q ss_pred EcccCCChHH---HHhhhCCCCeecCCCCc----cccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhh
Q 001615 435 LMSATINADL---FSKYFGNAPTVHIPGLT----FPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTAL 507 (1044)
Q Consensus 435 lmSATl~~~~---~~~~f~~~~~i~v~g~~----~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (1044)
+||||+..++ -.+|+.++-.+.+.... +-+..+|+.
T Consensus 222 mfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~Yvk------------------------------------- 264 (387)
T KOG0329|consen 222 MFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVK------------------------------------- 264 (387)
T ss_pred eeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHh-------------------------------------
Confidence 9999998874 22333332222221110 111111110
Q ss_pred hhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeE
Q 001615 508 FEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFL 587 (1044)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~ 587 (1044)
...... .-.+.+++..+ .-..++||+.+...+
T Consensus 265 ------------Lke~eK------------Nrkl~dLLd~L----eFNQVvIFvKsv~Rl-------------------- 296 (387)
T KOG0329|consen 265 ------------LKENEK------------NRKLNDLLDVL----EFNQVVIFVKSVQRL-------------------- 296 (387)
T ss_pred ------------hhhhhh------------hhhhhhhhhhh----hhcceeEeeehhhhh--------------------
Confidence 000000 00011122111 224578887664330
Q ss_pred EEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhc
Q 001615 588 VLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRR 667 (1044)
Q Consensus 588 i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~ 667 (1044)
. | .++ +|||++..||+||.-|+.|+||++|.... +|.||.
T Consensus 297 ---------------~---f--~kr--~vat~lfgrgmdiervNi~~NYdmp~~~D------------------tYlHrv 336 (387)
T KOG0329|consen 297 ---------------S---F--QKR--LVATDLFGRGMDIERVNIVFNYDMPEDSD------------------TYLHRV 336 (387)
T ss_pred ---------------h---h--hhh--hHHhhhhccccCcccceeeeccCCCCCch------------------HHHHHh
Confidence 0 2 123 89999999999999999999999999666 999999
Q ss_pred ccCCCC-CCcEEEEecChhhH
Q 001615 668 GRAGRV-QPGVCYKLYPRIIH 687 (1044)
Q Consensus 668 GRAGR~-~~G~c~~L~t~~~~ 687 (1044)
|||||. ..|.++.+.+.+..
T Consensus 337 ~rAgrfGtkglaitfvs~e~d 357 (387)
T KOG0329|consen 337 ARAGRFGTKGLAITFVSDEND 357 (387)
T ss_pred hhhhccccccceeehhcchhh
Confidence 999999 67999999886644
No 97
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.88 E-value=2.2e-21 Score=223.67 Aligned_cols=303 Identities=18% Similarity=0.234 Sum_probs=214.3
Q ss_pred cCCCchHHHHHHHHHHHcC------CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHH
Q 001615 279 EKLPAFKMKAEFLKAVAEN------QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSS 352 (1044)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~~------~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~ 352 (1044)
-.+.++..|+.++.-|... -+=+++|.-|||||..+.+.++...-. +.++...+||-+||.|.++.+++
T Consensus 259 LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~-----G~Q~ALMAPTEILA~QH~~~~~~ 333 (677)
T COG1200 259 LPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA-----GYQAALMAPTEILAEQHYESLRK 333 (677)
T ss_pred CCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc-----CCeeEEeccHHHHHHHHHHHHHH
Confidence 3345789999999988752 134899999999998888888876532 45788999999999999999988
Q ss_pred HhCCCCCcEEEEEEec----------cccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHH
Q 001615 353 ERGENLGETVGYQIRL----------ESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILR 422 (1044)
Q Consensus 353 ~~~~~~g~~vgy~ir~----------~~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk 422 (1044)
.+. ..|..|++-... +...+...+|+|.|...+ +.+-.+.++.++|+||=|..++..- .
T Consensus 334 ~l~-~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi----Qd~V~F~~LgLVIiDEQHRFGV~QR------~ 402 (677)
T COG1200 334 WLE-PLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI----QDKVEFHNLGLVIIDEQHRFGVHQR------L 402 (677)
T ss_pred Hhh-hcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh----hcceeecceeEEEEeccccccHHHH------H
Confidence 765 344555544321 222344689999998643 3334789999999999996565542 2
Q ss_pred HHcccCC-cccEEEcccCC-ChHHHHhhhCCCCeecC---CCCccccceeehHHHHHhhhcccCcccccccccccccccc
Q 001615 423 DLLPRRP-DLRLILMSATI-NADLFSKYFGNAPTVHI---PGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQ 497 (1044)
Q Consensus 423 ~~~~~~~-~~qiilmSATl-~~~~~~~~f~~~~~i~v---~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (1044)
.+..+.. .+.+++||||. |....-..|++-.+-.+ |.-..|+..+.+.+-
T Consensus 403 ~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~------------------------- 457 (677)
T COG1200 403 ALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHE------------------------- 457 (677)
T ss_pred HHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccc-------------------------
Confidence 2333444 68999999997 55555677887554433 323345554443210
Q ss_pred ccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHH--------HHH
Q 001615 498 DSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWND--------ISK 569 (1044)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~--------i~~ 569 (1044)
..+ .+.+.+..-+ ..+..+.|-||=.++ ++.
T Consensus 458 --~~~-------------------------------------~v~e~i~~ei--~~GrQaY~VcPLIeESE~l~l~~a~~ 496 (677)
T COG1200 458 --RRP-------------------------------------EVYERIREEI--AKGRQAYVVCPLIEESEKLELQAAEE 496 (677)
T ss_pred --cHH-------------------------------------HHHHHHHHHH--HcCCEEEEEeccccccccchhhhHHH
Confidence 000 0111122111 135577888886654 445
Q ss_pred HHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceecccccc
Q 001615 570 LLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNK 649 (1044)
Q Consensus 570 l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~ 649 (1044)
+++.|.. .+ .++.|..+||.|+.+|+++|++.|++|...|||||.|.|-|||+|+.++.|-.+.-+
T Consensus 497 ~~~~L~~-~~----~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AER--------- 562 (677)
T COG1200 497 LYEELKS-FL----PELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAER--------- 562 (677)
T ss_pred HHHHHHH-Hc----ccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhh---------
Confidence 5666662 22 577899999999999999999999999999999999999999999999988754443
Q ss_pred ccccccccccHhhHHHhcccCCCC-CCcEEEEecChh
Q 001615 650 LACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRI 685 (1044)
Q Consensus 650 ~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~ 685 (1044)
.--|+..|-+||.||- .++.|+.+|...
T Consensus 563 --------FGLaQLHQLRGRVGRG~~qSyC~Ll~~~~ 591 (677)
T COG1200 563 --------FGLAQLHQLRGRVGRGDLQSYCVLLYKPP 591 (677)
T ss_pred --------hhHHHHHHhccccCCCCcceEEEEEeCCC
Confidence 1445889999999999 789999999753
No 98
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.88 E-value=6.7e-22 Score=232.00 Aligned_cols=358 Identities=19% Similarity=0.214 Sum_probs=231.2
Q ss_pred cChhHHHHHHHhcCCCchHHHHHHHH--HHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHH
Q 001615 267 SSDSGKAMLSFREKLPAFKMKAEFLK--AVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAI 344 (1044)
Q Consensus 267 ~~~~~~~~~~~r~~lpi~~~Q~~~i~--~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~ 344 (1044)
.+.......+..+.+-.|.+|.+.+. .++.++++|.++||+.|||++.-+.++...+... .+++.+.|....+.
T Consensus 208 ~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~r----r~~llilp~vsiv~ 283 (1008)
T KOG0950|consen 208 PTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRR----RNVLLILPYVSIVQ 283 (1008)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHh----hceeEecceeehhH
Confidence 33334445556667778889998875 4788999999999999999999999888877643 35777778777666
Q ss_pred HHHHHHHHHhCCCCCcEE-EEEEecccc-CCCCccEEEEchHH---HHHHHhcCCCCCccceEEechhh-----hccchh
Q 001615 345 SVAARVSSERGENLGETV-GYQIRLESK-RSAQTRLLFCTTGV---LLRQLVEDPDLSCVSHLLVDEIH-----ERGMNE 414 (1044)
Q Consensus 345 qva~rv~~~~~~~~g~~v-gy~ir~~~~-~~~~~~I~v~T~g~---Ll~~l~~~~~L~~~~~lIiDEaH-----eR~~~~ 414 (1044)
.-...+..+ .+.+|..| +|.-++... ......+.+||.++ |.+.|.....++.++.|||||.| +|+...
T Consensus 284 Ek~~~l~~~-~~~~G~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~l 362 (1008)
T KOG0950|consen 284 EKISALSPF-SIDLGFPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAIL 362 (1008)
T ss_pred HHHhhhhhh-ccccCCcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHH
Confidence 655555443 33444444 344333222 23457899999876 56666666678899999999999 465555
Q ss_pred HHHHHHHHHHcccCCcccEEEcccCC-ChHHHHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCcccccccccccc
Q 001615 415 DFLLIILRDLLPRRPDLRLILMSATI-NADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRR 493 (1044)
Q Consensus 415 d~ll~~lk~~~~~~~~~qiilmSATl-~~~~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 493 (1044)
+.++.-+.... ....+|+|+||||+ |.+.+++||+ +.+....-|+.|+.++.... .+.|..
T Consensus 363 E~~l~k~~y~~-~~~~~~iIGMSATi~N~~lL~~~L~-A~~y~t~fRPv~L~E~ik~G---~~i~~~------------- 424 (1008)
T KOG0950|consen 363 ELLLAKILYEN-LETSVQIIGMSATIPNNSLLQDWLD-AFVYTTRFRPVPLKEYIKPG---SLIYES------------- 424 (1008)
T ss_pred HHHHHHHHHhc-cccceeEeeeecccCChHHHHHHhh-hhheecccCcccchhccCCC---cccccc-------------
Confidence 54444322222 22348899999998 6667888886 33333333444443322100 000000
Q ss_pred ccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHH
Q 001615 494 SRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQ 573 (1044)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~ 573 (1044)
.....+.... .. |+ -....-|.|.++.+..... .++.++|||||++..++.++..
T Consensus 425 -----~r~~~lr~ia-~l--------~~---------~~~g~~dpD~~v~L~tet~--~e~~~~lvfc~sk~~ce~~a~~ 479 (1008)
T KOG0950|consen 425 -----SRNKVLREIA-NL--------YS---------SNLGDEDPDHLVGLCTETA--PEGSSVLVFCPSKKNCENVASL 479 (1008)
T ss_pred -----hhhHHHHHhh-hh--------hh---------hhcccCCCcceeeehhhhh--hcCCeEEEEcCcccchHHHHHH
Confidence 0000000000 00 00 0000011122222222222 2234599999999999998876
Q ss_pred HHccc-------------------------------cCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccc
Q 001615 574 IKVNK-------------------------------FLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAE 622 (1044)
Q Consensus 574 L~~~~-------------------------------~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae 622 (1044)
+.... .......+.+..+|++++.++|+.|...|+.|...|++||++++
T Consensus 480 ~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTla 559 (1008)
T KOG0950|consen 480 IAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLA 559 (1008)
T ss_pred HHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhh
Confidence 54210 01123467899999999999999999999999999999999999
Q ss_pred cccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC---CCcEEEEecChhh
Q 001615 623 SSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV---QPGVCYKLYPRII 686 (1044)
Q Consensus 623 ~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~---~~G~c~~L~t~~~ 686 (1044)
.|++.|..+++|-+-+.. ....++.+|.||+|||||+ .-|.|+.++.+..
T Consensus 560 aGVNLPArRVIiraP~~g--------------~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e 612 (1008)
T KOG0950|consen 560 AGVNLPARRVIIRAPYVG--------------REFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSE 612 (1008)
T ss_pred ccCcCCcceeEEeCCccc--------------cchhhhhhHHhhhhhhhhcccccCcceEEEeeccc
Confidence 999999999999755443 2234677999999999999 5699999998765
No 99
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=9.5e-22 Score=232.15 Aligned_cols=295 Identities=15% Similarity=0.181 Sum_probs=178.4
Q ss_pred EEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEE---e---ccccCCC
Q 001615 301 VVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQI---R---LESKRSA 374 (1044)
Q Consensus 301 ii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~i---r---~~~~~~~ 374 (1044)
++.|+||||||..+...+.+. +.. +.++|++.|+++|+.|+++++.+.++..+....+..- + +......
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~-l~~----g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g 75 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKV-LAL----GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNG 75 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHH-HHc----CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcC
Confidence 478999999998886665444 332 3479999999999999999998877644321111000 0 0011123
Q ss_pred CccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHH----HHHHHcccCCcccEEEcccCCChHHHHhhhC
Q 001615 375 QTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLI----ILRDLLPRRPDLRLILMSATINADLFSKYFG 450 (1044)
Q Consensus 375 ~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~----~lk~~~~~~~~~qiilmSATl~~~~~~~~f~ 450 (1044)
..+|+|+|+..+.. .+.++++|||||+|+-+...+-.+. -+..+.....+.++|++|||...+.+.....
T Consensus 76 ~~~IVVGTrsalf~------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~ 149 (505)
T TIGR00595 76 EILVVIGTRSALFL------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQ 149 (505)
T ss_pred CCCEEECChHHHcC------cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhc
Confidence 57899999987642 3678999999999964432221000 0111122345789999999988776664432
Q ss_pred CC-CeecCCCC----ccccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhhhhcccccccccchhhhhH
Q 001615 451 NA-PTVHIPGL----TFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTR 525 (1044)
Q Consensus 451 ~~-~~i~v~g~----~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (1044)
+. ..+..+.+ ..|. ...+ |. .. ....
T Consensus 150 g~~~~~~l~~r~~~~~~p~-v~vi-d~---------------~~--------~~~~------------------------ 180 (505)
T TIGR00595 150 KAYRLLVLTRRVSGRKPPE-VKLI-DM---------------RK--------EPRQ------------------------ 180 (505)
T ss_pred CCeEEeechhhhcCCCCCe-EEEE-ec---------------cc--------cccc------------------------
Confidence 21 11222111 1111 0000 00 00 0000
Q ss_pred HHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHH---------------------------------------
Q 001615 526 ASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWND--------------------------------------- 566 (1044)
Q Consensus 526 ~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~--------------------------------------- 566 (1044)
..+... +.+.+...+ ..++.+|||+|++.-
T Consensus 181 --------~~ls~~-l~~~i~~~l--~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~ 249 (505)
T TIGR00595 181 --------SFLSPE-LITAIEQTL--AAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQ 249 (505)
T ss_pred --------CCccHH-HHHHHHHHH--HcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCc
Confidence 000001 122222222 234578888776532
Q ss_pred ---------------------HHHHHHHHHccccCCCCCCeEEEEecCCCChHHH--HhhhCCCCCCCcEEEEeeccccc
Q 001615 567 ---------------------ISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQ--REIFDRPPPNKRKIVLATNIAES 623 (1044)
Q Consensus 567 ---------------------i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er--~~v~~~f~~g~~kIlvaTniae~ 623 (1044)
++.+.+.|.... .+..+..+|++++..++ +++++.|++|+..|||+|++++.
T Consensus 250 ~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~f-----p~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~k 324 (505)
T TIGR00595 250 EPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLF-----PGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAK 324 (505)
T ss_pred CCCCCCCCCCCCCeeEeecccHHHHHHHHHhhC-----CCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCccccc
Confidence 455666665421 45789999999987765 88999999999999999999999
Q ss_pred ccCCCCeEEE--EeCCCCcc-eeccccccccccccccccHhhHHHhcccCCCC-CCcEEEE
Q 001615 624 SITIDDVVYV--VDCGKAKE-TSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYK 680 (1044)
Q Consensus 624 GidIp~V~~V--Id~g~~k~-~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~ 680 (1044)
|+|+|+|+.| +|.|..-. ..|.+... .-+.+.|++|||||. .+|.++.
T Consensus 325 G~d~~~v~lV~vl~aD~~l~~pd~ra~E~---------~~~ll~q~~GRagR~~~~g~vii 376 (505)
T TIGR00595 325 GHHFPNVTLVGVLDADSGLHSPDFRAAER---------GFQLLTQVAGRAGRAEDPGQVII 376 (505)
T ss_pred CCCCCcccEEEEEcCcccccCcccchHHH---------HHHHHHHHHhccCCCCCCCEEEE
Confidence 9999999988 46664221 11221111 223789999999997 7798873
No 100
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.87 E-value=2.1e-20 Score=196.17 Aligned_cols=293 Identities=19% Similarity=0.290 Sum_probs=195.4
Q ss_pred HHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhC-CCCCcEEEEEE
Q 001615 288 AEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERG-ENLGETVGYQI 366 (1044)
Q Consensus 288 ~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~-~~~g~~vgy~i 366 (1044)
.+++..+.+.++++|.|-||+|||-.+-+-|-. .+. .+.+|.+..||...+.+++.|+.+.+. +.+ ..-|+-
T Consensus 107 ~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~-al~----~G~~vciASPRvDVclEl~~Rlk~aF~~~~I--~~Lyg~ 179 (441)
T COG4098 107 NQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQ-ALN----QGGRVCIASPRVDVCLELYPRLKQAFSNCDI--DLLYGD 179 (441)
T ss_pred HHHHHHHHhcCcEEEEEecCCCchhhhHHHHHH-HHh----cCCeEEEecCcccchHHHHHHHHHhhccCCe--eeEecC
Confidence 456777888999999999999999655544433 333 256899999999999999999988765 333 222322
Q ss_pred eccccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHH-HHHHcccCCcccEEEcccCCChHHH
Q 001615 367 RLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLII-LRDLLPRRPDLRLILMSATINADLF 445 (1044)
Q Consensus 367 r~~~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~-lk~~~~~~~~~qiilmSATl~~~~~ 445 (1044)
+..--.+.++|||+-.|+++- +.++++||||+|-.-...|-.+.. ++.. ..+.--+|.||||.+.+..
T Consensus 180 ---S~~~fr~plvVaTtHQLlrFk------~aFD~liIDEVDAFP~~~d~~L~~Av~~a--rk~~g~~IylTATp~k~l~ 248 (441)
T COG4098 180 ---SDSYFRAPLVVATTHQLLRFK------QAFDLLIIDEVDAFPFSDDQSLQYAVKKA--RKKEGATIYLTATPTKKLE 248 (441)
T ss_pred ---CchhccccEEEEehHHHHHHH------hhccEEEEeccccccccCCHHHHHHHHHh--hcccCceEEEecCChHHHH
Confidence 111113789999999999876 468999999999766666655543 3332 2335568999999887765
Q ss_pred HhhhCC-CCeecCCCC----ccccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhhhhcccccccccch
Q 001615 446 SKYFGN-APTVHIPGL----TFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNY 520 (1044)
Q Consensus 446 ~~~f~~-~~~i~v~g~----~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (1044)
.+-..+ ...+.+|.| +.|+..+.-- ++ |.+ .+
T Consensus 249 r~~~~g~~~~~klp~RfH~~pLpvPkf~w~------------------~~--~~k-----------~l------------ 285 (441)
T COG4098 249 RKILKGNLRILKLPARFHGKPLPVPKFVWI------------------GN--WNK-----------KL------------ 285 (441)
T ss_pred HHhhhCCeeEeecchhhcCCCCCCCceEEe------------------cc--HHH-----------Hh------------
Confidence 554432 223444433 2333222100 00 000 00
Q ss_pred hhhhHHHHHhhhhhhhchHHHHHHHHHHHhc-cCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHH
Q 001615 521 RASTRASLEAWSAEQIDLGLVESTIEYICRH-EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTIN 599 (1044)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~-~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~e 599 (1044)
....+ -..++.+|-.. ..+.++|||+|+....+.++..|+... ....+...|+. ...
T Consensus 286 -----------~r~kl----~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~-----~~~~i~~Vhs~--d~~ 343 (441)
T COG4098 286 -----------QRNKL----PLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKL-----PKETIASVHSE--DQH 343 (441)
T ss_pred -----------hhccC----CHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhC-----Cccceeeeecc--Ccc
Confidence 00000 01233333322 235689999999999999999996532 44567788886 446
Q ss_pred HHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC--CC-c
Q 001615 600 QREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV--QP-G 676 (1044)
Q Consensus 600 r~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~--~~-G 676 (1044)
|.+..+.|++|+.+|||+|.|+|||+|+|+|+++|- |-.. ..| |+++.+|.+||+||. .| |
T Consensus 344 R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl-gaeh-~vf--------------TesaLVQIaGRvGRs~~~PtG 407 (441)
T COG4098 344 RKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVL-GAEH-RVF--------------TESALVQIAGRVGRSLERPTG 407 (441)
T ss_pred HHHHHHHHHcCceEEEEEeehhhcccccccceEEEe-cCCc-ccc--------------cHHHHHHHhhhccCCCcCCCC
Confidence 777778999999999999999999999999998774 2111 122 788999999999998 33 6
Q ss_pred EEE
Q 001615 677 VCY 679 (1044)
Q Consensus 677 ~c~ 679 (1044)
..+
T Consensus 408 dv~ 410 (441)
T COG4098 408 DVL 410 (441)
T ss_pred cEE
Confidence 543
No 101
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.85 E-value=6.3e-20 Score=226.97 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=99.5
Q ss_pred HHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCC--CcEEEEee
Q 001615 541 VESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPN--KRKIVLAT 618 (1044)
Q Consensus 541 i~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g--~~kIlvaT 618 (1044)
..+.+..+++.....++||||.++..+..+.+.|+.. .++.+..+||+|++.+|.++++.|+++ ..+|||||
T Consensus 480 Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~------~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsT 553 (956)
T PRK04914 480 RVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER------EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCS 553 (956)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc------cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEec
Confidence 3334445555555789999999999999999999642 478899999999999999999999874 69999999
Q ss_pred cccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC-CCcE--EEEecCh
Q 001615 619 NIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGV--CYKLYPR 684 (1044)
Q Consensus 619 niae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~--c~~L~t~ 684 (1044)
+++++|+|++.+++||++++|.+ ...|.||+||+||. +.|. .|.++.+
T Consensus 554 dvgseGlNlq~a~~VInfDlP~n------------------P~~~eQRIGR~~RiGQ~~~V~i~~~~~~ 604 (956)
T PRK04914 554 EIGSEGRNFQFASHLVLFDLPFN------------------PDLLEQRIGRLDRIGQKHDIQIHVPYLE 604 (956)
T ss_pred hhhccCCCcccccEEEEecCCCC------------------HHHHHHHhcccccCCCCceEEEEEccCC
Confidence 99999999999999999999994 44999999999998 4443 4444443
No 102
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.85 E-value=7.8e-20 Score=221.90 Aligned_cols=308 Identities=18% Similarity=0.213 Sum_probs=225.7
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHc----CC--eEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHH
Q 001615 271 GKAMLSFREKLPAFKMKAEFLKAVAE----NQ--VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAI 344 (1044)
Q Consensus 271 ~~~~~~~r~~lpi~~~Q~~~i~~i~~----~~--~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~ 344 (1044)
.++.....-..--|+=|..+|+.+.+ ++ |=+|||.-|-|||-.+.-.+...... +..|.|++||-.||.
T Consensus 583 ~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~-----GKQVAvLVPTTlLA~ 657 (1139)
T COG1197 583 WQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD-----GKQVAVLVPTTLLAQ 657 (1139)
T ss_pred HHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC-----CCeEEEEcccHHhHH
Confidence 34444444445557889888988864 33 56999999999998887777766543 468999999999999
Q ss_pred HHHHHHHHHhCCCCCcEEEEEEecccc----------CCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchh
Q 001615 345 SVAARVSSERGENLGETVGYQIRLESK----------RSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNE 414 (1044)
Q Consensus 345 qva~rv~~~~~~~~g~~vgy~ir~~~~----------~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~ 414 (1044)
|.++.+++.+. .....|+.--|+.+. .....+|+|.|.- +|..+-.+.++++|||||=|..|+..
T Consensus 658 QHy~tFkeRF~-~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL~kdv~FkdLGLlIIDEEqRFGVk~ 732 (1139)
T COG1197 658 QHYETFKERFA-GFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LLSKDVKFKDLGLLIIDEEQRFGVKH 732 (1139)
T ss_pred HHHHHHHHHhc-CCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hhCCCcEEecCCeEEEechhhcCccH
Confidence 99999977654 344556655554322 2346799999974 55556689999999999999777765
Q ss_pred HHHHHHHHHHcccCCcccEEEcccCCChH-HHHhhhC--CCCeecC-CCCccccceeehHHHHHhhhcccCccccccccc
Q 001615 415 DFLLIILRDLLPRRPDLRLILMSATINAD-LFSKYFG--NAPTVHI-PGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGN 490 (1044)
Q Consensus 415 d~ll~~lk~~~~~~~~~qiilmSATl~~~-~~~~~f~--~~~~i~v-~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~ 490 (1044)
-- -+| ..+.++.++-||||.=+. .-....| +-.+|.. |...+||..+..+.
T Consensus 733 KE---kLK---~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~------------------- 787 (1139)
T COG1197 733 KE---KLK---ELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEY------------------- 787 (1139)
T ss_pred HH---HHH---HHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecC-------------------
Confidence 31 122 345789999999997444 3233332 2233333 45557776665431
Q ss_pred cccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHH-HHHHHhccCCCCEEEEeCCHHHHHH
Q 001615 491 SRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVEST-IEYICRHEGDGAILVFLTGWNDISK 569 (1044)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~-l~~i~~~~~~g~iLVFl~~~~~i~~ 569 (1044)
|..++.++ +..+. .+|.+-.-.|..++|+.
T Consensus 788 ----------------------------------------------d~~~ireAI~REl~---RgGQvfYv~NrV~~Ie~ 818 (1139)
T COG1197 788 ----------------------------------------------DDLLIREAILRELL---RGGQVFYVHNRVESIEK 818 (1139)
T ss_pred ----------------------------------------------ChHHHHHHHHHHHh---cCCEEEEEecchhhHHH
Confidence 01123333 33343 57899999999999999
Q ss_pred HHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceecccccc
Q 001615 570 LLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNK 649 (1044)
Q Consensus 570 l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~ 649 (1044)
+++.|+.. .+...|...||.|+..+-+.++..|-+|...|||||.|.|+|||||+++.+|--..-+
T Consensus 819 ~~~~L~~L-----VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~--------- 884 (1139)
T COG1197 819 KAERLREL-----VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADK--------- 884 (1139)
T ss_pred HHHHHHHh-----CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEecccc---------
Confidence 99999874 2677899999999999999999999999999999999999999999999888532222
Q ss_pred ccccccccccHhhHHHhcccCCCC-CCcEEEEecCh
Q 001615 650 LACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPR 684 (1044)
Q Consensus 650 ~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~ 684 (1044)
.--++..|-+||.||. ..+.||.||..
T Consensus 885 --------fGLsQLyQLRGRVGRS~~~AYAYfl~p~ 912 (1139)
T COG1197 885 --------FGLAQLYQLRGRVGRSNKQAYAYFLYPP 912 (1139)
T ss_pred --------ccHHHHHHhccccCCccceEEEEEeecC
Confidence 1344889999999999 78999999985
No 103
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.83 E-value=6.4e-20 Score=193.18 Aligned_cols=280 Identities=14% Similarity=0.154 Sum_probs=182.6
Q ss_pred hHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEE
Q 001615 284 FKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVG 363 (1044)
Q Consensus 284 ~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vg 363 (1044)
.|.|.+.|.+.+.+.+++++.|||.|||+++-+|.|-. .+-.||+.|.-.|....--.+.+ +|......-.
T Consensus 96 rplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a--------dg~alvi~plislmedqil~lkq-lgi~as~lna 166 (695)
T KOG0353|consen 96 RPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA--------DGFALVICPLISLMEDQILQLKQ-LGIDASMLNA 166 (695)
T ss_pred ChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc--------CCceEeechhHHHHHHHHHHHHH-hCcchhhccC
Confidence 35799999999999999999999999999988887653 34678888988887654444432 3332111000
Q ss_pred EE-----Eeccc---cCCCCccEEEEchHHHHH------HHhcCCCCCccceEEechhhhc-----cchhHH-HHHHHHH
Q 001615 364 YQ-----IRLES---KRSAQTRLLFCTTGVLLR------QLVEDPDLSCVSHLLVDEIHER-----GMNEDF-LLIILRD 423 (1044)
Q Consensus 364 y~-----ir~~~---~~~~~~~I~v~T~g~Ll~------~l~~~~~L~~~~~lIiDEaHeR-----~~~~d~-ll~~lk~ 423 (1044)
.. -+.+. .....-+++|.||+.+.. .|...-....+..|-|||+|.- +...|+ .+.+|+
T Consensus 167 nsske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilk- 245 (695)
T KOG0353|consen 167 NSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILK- 245 (695)
T ss_pred cccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHH-
Confidence 00 01111 112356799999987643 3333335567899999999962 333443 234444
Q ss_pred HcccCCcccEEEcccCCChHHHHh---hhCCCCeec-CCCCccccceeehHHHHHhhhcccCcccccccccccccccccc
Q 001615 424 LLPRRPDLRLILMSATINADLFSK---YFGNAPTVH-IPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDS 499 (1044)
Q Consensus 424 ~~~~~~~~qiilmSATl~~~~~~~---~f~~~~~i~-v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (1044)
+.++...+|+++||.....+.+ .+.-...+. -.|...|- .+| .+ .+ ++..
T Consensus 246 --rqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~n-l~y----------ev-------~q------kp~n 299 (695)
T KOG0353|consen 246 --RQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPN-LKY----------EV-------RQ------KPGN 299 (695)
T ss_pred --HhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCC-cee----------Ee-------ee------CCCC
Confidence 4677889999999975443221 111000000 00000000 000 00 00 0000
Q ss_pred chhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHcccc
Q 001615 500 KKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKF 579 (1044)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~ 579 (1044)
. -+.++++...|...-.+..-||||-++++++.++..|+.
T Consensus 300 ~-------------------------------------dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn--- 339 (695)
T KOG0353|consen 300 E-------------------------------------DDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKN--- 339 (695)
T ss_pred h-------------------------------------HHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHh---
Confidence 0 012444444454444556779999999999999999997
Q ss_pred CCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCccee
Q 001615 580 LGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETS 643 (1044)
Q Consensus 580 ~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~ 643 (1044)
.++....+|+.|.++++..+-+.+-.|++.|||||-....|||-|||++||+..+||.+.
T Consensus 340 ----~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksie 399 (695)
T KOG0353|consen 340 ----HGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIE 399 (695)
T ss_pred ----cCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHH
Confidence 566777899999999999999999999999999999999999999999999999999443
No 104
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=1.5e-18 Score=208.79 Aligned_cols=126 Identities=17% Similarity=0.133 Sum_probs=95.0
Q ss_pred hcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 001615 278 REKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (1044)
Q Consensus 278 r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~ 357 (1044)
++.|-+.+|-.+++-.+.=++--|..++||+|||+++.++++..++. +..++|+.|+++||.|.++.+.... ..
T Consensus 76 ~R~lg~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~-----G~~V~VvTpn~yLA~qd~e~m~~l~-~~ 149 (896)
T PRK13104 76 LRTLGLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAIS-----GRGVHIVTVNDYLAKRDSQWMKPIY-EF 149 (896)
T ss_pred HHHcCCCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhc-----CCCEEEEcCCHHHHHHHHHHHHHHh-cc
Confidence 45666666666677766545555899999999999999999987754 2358889999999999998887654 45
Q ss_pred CCcEEEEEEeccc----cCCCCccEEEEchHHH-HHHHhcCC--CC-----CccceEEechhhh
Q 001615 358 LGETVGYQIRLES----KRSAQTRLLFCTTGVL-LRQLVEDP--DL-----SCVSHLLVDEIHE 409 (1044)
Q Consensus 358 ~g~~vgy~ir~~~----~~~~~~~I~v~T~g~L-l~~l~~~~--~L-----~~~~~lIiDEaHe 409 (1044)
+|.+||.-..... +..-.++|+|+|||.| .++|..+. .+ ..+.++||||||.
T Consensus 150 lGLtv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDs 213 (896)
T PRK13104 150 LGLTVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDS 213 (896)
T ss_pred cCceEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhh
Confidence 6777776543221 1122689999999999 88887763 23 5899999999994
No 105
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.79 E-value=2.3e-18 Score=181.56 Aligned_cols=173 Identities=21% Similarity=0.136 Sum_probs=124.3
Q ss_pred hhHHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHH
Q 001615 269 DSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAA 348 (1044)
Q Consensus 269 ~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~ 348 (1044)
+...+.+...+...++++|.++++.+.+++++++++|||+|||..+.+++++.+.......++++++++|+++|+.|+++
T Consensus 8 ~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~ 87 (203)
T cd00268 8 PELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAE 87 (203)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHH
Confidence 33344444444556789999999999999999999999999999999999998876422345789999999999999998
Q ss_pred HHHHHhCCCCCcEEEEEEec-----c-ccCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccchhHHHHHHH
Q 001615 349 RVSSERGENLGETVGYQIRL-----E-SKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIIL 421 (1044)
Q Consensus 349 rv~~~~~~~~g~~vgy~ir~-----~-~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~~d~ll~~l 421 (1044)
.+...... .+..+..-... . .....+++|+|+||+.|++.+.... .+.++++||+||+|+- .+.++...+.
T Consensus 88 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~-~~~~~~~~~~ 165 (203)
T cd00268 88 VARKLGKH-TNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRM-LDMGFEDQIR 165 (203)
T ss_pred HHHHHhcc-CCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHh-hccChHHHHH
Confidence 88765432 23333221110 0 1112378899999999999988766 7889999999999952 2333333332
Q ss_pred HHHcccCCcccEEEcccCCChH
Q 001615 422 RDLLPRRPDLRLILMSATINAD 443 (1044)
Q Consensus 422 k~~~~~~~~~qiilmSATl~~~ 443 (1044)
..+....++.++++||||++..
T Consensus 166 ~~~~~l~~~~~~~~~SAT~~~~ 187 (203)
T cd00268 166 EILKLLPKDRQTLLFSATMPKE 187 (203)
T ss_pred HHHHhCCcccEEEEEeccCCHH
Confidence 2222334578999999999754
No 106
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=2.2e-17 Score=198.16 Aligned_cols=116 Identities=20% Similarity=0.223 Sum_probs=99.1
Q ss_pred HHHHHHHh-ccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeeccc
Q 001615 543 STIEYICR-HEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIA 621 (1044)
Q Consensus 543 ~~l~~i~~-~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTnia 621 (1044)
.++..+.. ...+.+|||||.+....+.+++.|.. .++....+|+.+...|+..+...+++|. |+||||+|
T Consensus 428 al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~-------~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmA 498 (796)
T PRK12906 428 AVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDE-------AGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMA 498 (796)
T ss_pred HHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH-------CCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccc
Confidence 34444432 24567999999999999999999987 4566778999999999999988888877 99999999
Q ss_pred ccccCC---CCeE-----EEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC-CCcEEEEecChh
Q 001615 622 ESSITI---DDVV-----YVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRI 685 (1044)
Q Consensus 622 e~GidI---p~V~-----~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~ 685 (1044)
+||+|| ++|. |||++.+|. |+..+.||+|||||. .||.+..+++-+
T Consensus 499 GRGtDI~l~~~V~~~GGLhVI~te~pe------------------s~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 499 GRGTDIKLGPGVKELGGLAVIGTERHE------------------SRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred cCCCCCCCCcchhhhCCcEEEeeecCC------------------cHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 999999 4999 999999998 555999999999999 899998888765
No 107
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.77 E-value=8.3e-18 Score=171.66 Aligned_cols=157 Identities=24% Similarity=0.258 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEE
Q 001615 284 FKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVG 363 (1044)
Q Consensus 284 ~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vg 363 (1044)
+++|.++++.+.++++++++||||||||+++..+++..+... ...++++++|+++|+.|+++++.+...........
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~---~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG---KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT---SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC---CCceEEEEeeccccccccccccccccccccccccc
Confidence 478999999999999999999999999999999999887653 23489999999999999999998877652222222
Q ss_pred EEEecc-------ccCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccch--hHHHHHHHHHHcccCCcccE
Q 001615 364 YQIRLE-------SKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMN--EDFLLIILRDLLPRRPDLRL 433 (1044)
Q Consensus 364 y~ir~~-------~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~--~d~ll~~lk~~~~~~~~~qi 433 (1044)
+ .... .....+++|+|+||++|++.+..+. .+.++++|||||+|+.... .+.+..+++. +...++.++
T Consensus 78 ~-~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~-~~~~~~~~~ 155 (169)
T PF00270_consen 78 L-HGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRR-LKRFKNIQI 155 (169)
T ss_dssp E-STTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHH-SHTTTTSEE
T ss_pred c-cccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHH-hcCCCCCcE
Confidence 1 1100 1112468999999999999998754 5667999999999974332 2223333333 223346899
Q ss_pred EEcccCCChHHHH
Q 001615 434 ILMSATINADLFS 446 (1044)
Q Consensus 434 ilmSATl~~~~~~ 446 (1044)
|+||||++ ..+.
T Consensus 156 i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 156 ILLSATLP-SNVE 167 (169)
T ss_dssp EEEESSST-HHHH
T ss_pred EEEeeCCC-hhHh
Confidence 99999998 5433
No 108
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=8.7e-17 Score=193.80 Aligned_cols=367 Identities=17% Similarity=0.166 Sum_probs=199.4
Q ss_pred cCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC
Q 001615 279 EKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENL 358 (1044)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~ 358 (1044)
+.+-++++-.+++-.+.=++--|..++||+|||+++.++++-..+. |. .+-|+.|++.||.|.++.+.... ..+
T Consensus 76 R~lg~~~~dvQlig~l~L~~G~Iaem~TGeGKTLva~lpa~l~aL~---G~--~V~IvTpn~yLA~rd~e~~~~l~-~~L 149 (830)
T PRK12904 76 RVLGMRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALT---GK--GVHVVTVNDYLAKRDAEWMGPLY-EFL 149 (830)
T ss_pred HHhCCCCCccHHHhhHHhcCCchhhhhcCCCcHHHHHHHHHHHHHc---CC--CEEEEecCHHHHHHHHHHHHHHH-hhc
Confidence 3343334444455554333334899999999999999998644443 22 35677899999999999887654 456
Q ss_pred CcEEEEEEeccc----cCCCCccEEEEchHHH-HHHHhcCC-------CCCccceEEechhhhccc--------------
Q 001615 359 GETVGYQIRLES----KRSAQTRLLFCTTGVL-LRQLVEDP-------DLSCVSHLLVDEIHERGM-------------- 412 (1044)
Q Consensus 359 g~~vgy~ir~~~----~~~~~~~I~v~T~g~L-l~~l~~~~-------~L~~~~~lIiDEaHeR~~-------------- 412 (1044)
|.+||.-+.... +..-.++|+|+|++.| .++|.... .+..+.++||||||..-+
T Consensus 150 Glsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~ 229 (830)
T PRK12904 150 GLSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAE 229 (830)
T ss_pred CCeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCC
Confidence 777776543211 1112589999999999 88886543 367899999999994111
Q ss_pred -hhHHHHHHHHHHcccC--------CcccEEEcccCCChHHHHhhhCCCCeecCCCCccccceeehHHHHHh-------h
Q 001615 413 -NEDFLLIILRDLLPRR--------PDLRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEK-------T 476 (1044)
Q Consensus 413 -~~d~ll~~lk~~~~~~--------~~~qiilmSATl~~~~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~-------~ 476 (1044)
.+++...+.+.+.... ..-+.+.++.. ..+...++|+.......... + -.+++...+.. .
T Consensus 230 ~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~-G~~~~e~~~~~~~ly~~~~~--~-~~~~i~~AL~A~~l~~~d~ 305 (830)
T PRK12904 230 DSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEE-GIEKAEKLLGIENLYDPENI--A-LVHHLNQALRAHELFKRDV 305 (830)
T ss_pred cccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHH-HHHHHHHHhCCccccChhhh--H-HHHHHHHHHHHHHHHhcCC
Confidence 1122222222211111 12233333321 11234444432211111000 0 01222222211 1
Q ss_pred hcccCc----cccccccccccccccccchhhhhhhhh---cccccc-----------cc-cch---h------hhhHHHH
Q 001615 477 RYKMNS----KLDSFQGNSRRSRRQDSKKDHLTALFE---DVDIDS-----------NY-KNY---R------ASTRASL 528 (1044)
Q Consensus 477 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----------~~-~~~---~------~~~~~~~ 528 (1044)
.|.+.. ..+.+.+.... ...-.+-+.++++ .+.+.. +| ..| + ......+
T Consensus 306 dYiV~dg~V~ivDe~TGR~~~---gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~ 382 (830)
T PRK12904 306 DYIVKDGEVVIVDEFTGRLMP---GRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEF 382 (830)
T ss_pred cEEEECCEEEEEECCCCccCC---CCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHH
Confidence 121111 01111111100 0001112222221 111110 00 000 0 0000001
Q ss_pred Hhhh------------------hhh---hchHHHHHHHHHHHh-ccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCe
Q 001615 529 EAWS------------------AEQ---IDLGLVESTIEYICR-HEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKF 586 (1044)
Q Consensus 529 ~~~~------------------~~~---~~~~li~~~l~~i~~-~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~ 586 (1044)
..+- .+. ...+....++..+.+ ...+.++||||.+.+.++.+++.|.. .++
T Consensus 383 ~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~-------~gi 455 (830)
T PRK12904 383 REIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKK-------AGI 455 (830)
T ss_pred HHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH-------CCC
Confidence 0000 000 011223333333332 24567999999999999999999987 456
Q ss_pred EEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCe------------------------------------
Q 001615 587 LVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDV------------------------------------ 630 (1044)
Q Consensus 587 ~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V------------------------------------ 630 (1044)
....||+. +.+|+..+..|..+...|+||||+|+||+||+==
T Consensus 456 ~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 533 (830)
T PRK12904 456 PHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEA 533 (830)
T ss_pred ceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHc
Confidence 77789996 7889999999999999999999999999999721
Q ss_pred --EEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC-CCcEEEEecChh
Q 001615 631 --VYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRI 685 (1044)
Q Consensus 631 --~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~ 685 (1044)
-|||-+..+. |+--=.|-+|||||. .||.+-.+.+-+
T Consensus 534 GGLhVigTerhe------------------srRid~QlrGRagRQGdpGss~f~lSle 573 (830)
T PRK12904 534 GGLHVIGTERHE------------------SRRIDNQLRGRSGRQGDPGSSRFYLSLE 573 (830)
T ss_pred CCCEEEecccCc------------------hHHHHHHhhcccccCCCCCceeEEEEcC
Confidence 2555554444 555778999999999 789876666543
No 109
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.73 E-value=1.1e-16 Score=198.04 Aligned_cols=313 Identities=22% Similarity=0.217 Sum_probs=184.5
Q ss_pred CchHHHHHHHHHHHc---CC-eEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 001615 282 PAFKMKAEFLKAVAE---NQ-VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (1044)
Q Consensus 282 pi~~~Q~~~i~~i~~---~~-~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~ 357 (1044)
+.++.|..+++.+.+ .. .+++.||||+|||++...+.+...... .....+++.+.|+|.+..++++++....+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-IKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-ccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 345678888877754 34 889999999999998888877665442 2246799999999999999999998754432
Q ss_pred C--Cc-EEEEEE---------------ecccc-CCCCccEEEEchHHHHHHHhcCCCC-----CccceEEechhhhccch
Q 001615 358 L--GE-TVGYQI---------------RLESK-RSAQTRLLFCTTGVLLRQLVEDPDL-----SCVSHLLVDEIHERGMN 413 (1044)
Q Consensus 358 ~--g~-~vgy~i---------------r~~~~-~~~~~~I~v~T~g~Ll~~l~~~~~L-----~~~~~lIiDEaHeR~~~ 413 (1044)
. +. .-+... ...+. ...-..+.++||-..+......... -..+++|+||+|-..-+
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 1 11 111110 00000 0011224444443333322212111 23589999999953333
Q ss_pred --hHHHHHHHHHHcccCCcccEEEcccCCChHH---HHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccccc
Q 001615 414 --EDFLLIILRDLLPRRPDLRLILMSATINADL---FSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQ 488 (1044)
Q Consensus 414 --~d~ll~~lk~~~~~~~~~qiilmSATl~~~~---~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~ 488 (1044)
.-+++.++..+. .-+..+|+||||+|... +.++++....+.......|....+.-
T Consensus 354 ~~~~~l~~~i~~l~--~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~------------------ 413 (733)
T COG1203 354 TMLAALLALLEALA--EAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGL------------------ 413 (733)
T ss_pred chHHHHHHHHHHHH--hCCCCEEEEecCCCHHHHHHHHHHHhcccceecccccccccccccc------------------
Confidence 223333333332 23689999999998764 44554432211111000000000000
Q ss_pred cccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHH-HhccCCCCEEEEeCCHHHH
Q 001615 489 GNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYI-CRHEGDGAILVFLTGWNDI 567 (1044)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i-~~~~~~g~iLVFl~~~~~i 567 (1044)
.+.. ..+ +. +.. .......+ .....++++||-++|.+.+
T Consensus 414 ---~~~~----~~~-~~-------------------------------~~~-~~~~~~~~~~~~~~~~kvlvI~NTV~~A 453 (733)
T COG1203 414 ---KRKE----RVD-VE-------------------------------DGP-QEELIELISEEVKEGKKVLVIVNTVDRA 453 (733)
T ss_pred ---cccc----chh-hh-------------------------------hhh-hHhhhhcchhhhccCCcEEEEEecHHHH
Confidence 0000 000 00 000 00011111 1124568999999999999
Q ss_pred HHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCC----CCCCcEEEEeecccccccCCCCeEEEEeCCCCccee
Q 001615 568 SKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRP----PPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETS 643 (1044)
Q Consensus 568 ~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f----~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~ 643 (1044)
.++++.|+... ..+..+||.+...+|.+.++.. ..+.-.|+|||.+.|.||||+ .+++|=
T Consensus 454 ie~Y~~Lk~~~-------~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT-------- 517 (733)
T COG1203 454 IELYEKLKEKG-------PKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT-------- 517 (733)
T ss_pred HHHHHHHHhcC-------CCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee--------
Confidence 99999999732 2689999999999998777632 456789999999999999995 666662
Q ss_pred ccccccccccccccccHhhHHHhcccCCCCC---CcEEEEecC
Q 001615 644 YDALNKLACLLPSWISKASAHQRRGRAGRVQ---PGVCYKLYP 683 (1044)
Q Consensus 644 yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~---~G~c~~L~t 683 (1044)
...+..+.+||+||..|.+ +|..|..-.
T Consensus 518 ------------e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 518 ------------ELAPIDSLIQRAGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred ------------cCCCHHHHHHHHHHHhhcccccCCceeEeec
Confidence 1223449999999999995 455554433
No 110
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=4.1e-16 Score=187.27 Aligned_cols=126 Identities=16% Similarity=0.119 Sum_probs=91.1
Q ss_pred hcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 001615 278 REKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (1044)
Q Consensus 278 r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~ 357 (1044)
++.+-+.+|-.+++-.+.=++--|..++||.|||+++.++++..++. +..|.|+.|++.||.+.++.+..... .
T Consensus 76 ~R~lgm~~ydVQliGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~-----g~~VhIvT~ndyLA~RD~e~m~~l~~-~ 149 (908)
T PRK13107 76 KRVFEMRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALT-----GKGVHVITVNDYLARRDAENNRPLFE-F 149 (908)
T ss_pred HHHhCCCcCchHHhcchHhcCCccccccCCCCchHHHHHHHHHHHhc-----CCCEEEEeCCHHHHHHHHHHHHHHHH-h
Confidence 34555544545566665545555899999999999999999887764 23488889999999999988876544 3
Q ss_pred CCcEEEEEEecc---ccCC-CCccEEEEchHHH-HHHHhcCC-------CCCccceEEechhhh
Q 001615 358 LGETVGYQIRLE---SKRS-AQTRLLFCTTGVL-LRQLVEDP-------DLSCVSHLLVDEIHE 409 (1044)
Q Consensus 358 ~g~~vgy~ir~~---~~~~-~~~~I~v~T~g~L-l~~l~~~~-------~L~~~~~lIiDEaHe 409 (1044)
+|.+||...... .+.. =+++|+|+|++.| .++|..+- ....+.++||||||.
T Consensus 150 lGlsv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDs 213 (908)
T PRK13107 150 LGLTVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDS 213 (908)
T ss_pred cCCeEEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhh
Confidence 677777543221 2222 2689999999999 88776652 237789999999994
No 111
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.72 E-value=1.4e-15 Score=177.92 Aligned_cols=372 Identities=16% Similarity=0.182 Sum_probs=208.4
Q ss_pred HHHHHHHHHH----HcC-CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCC
Q 001615 285 KMKAEFLKAV----AEN-QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLG 359 (1044)
Q Consensus 285 ~~Q~~~i~~i----~~~-~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g 359 (1044)
.||..+|..+ .+| +-+++++.||+|||..+.++| +.++.. +...+||+++-|++|..|.+..+...+...
T Consensus 168 yyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii-~rL~r~--~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~-- 242 (875)
T COG4096 168 YYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAII-DRLIKS--GWVKRVLFLADRNALVDQAYGAFEDFLPFG-- 242 (875)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHH-HHHHhc--chhheeeEEechHHHHHHHHHHHHHhCCCc--
Confidence 3566655544 443 469999999999996555544 344432 334699999999999999988777665432
Q ss_pred cEEEEEEeccccCCCCccEEEEchHHHHHHHhcC-C-----CCCccceEEechhhhccchhHHHHHHHHHHcccCCcccE
Q 001615 360 ETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVED-P-----DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRL 433 (1044)
Q Consensus 360 ~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~-~-----~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qi 433 (1044)
..+- .+ .+......++|.++|...+...+... . ....+++||||||| |++..+.- +++..+ +.-+
T Consensus 243 ~~~n-~i-~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH-Rgi~~~~~-~I~dYF-----dA~~ 313 (875)
T COG4096 243 TKMN-KI-EDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH-RGIYSEWS-SILDYF-----DAAT 313 (875)
T ss_pred ccee-ee-ecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh-hhHHhhhH-HHHHHH-----HHHH
Confidence 1111 01 11122225799999999988877654 1 34569999999999 98877654 332222 2233
Q ss_pred EEcccCCChHH---HHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCc---ccccccccccccccccc-chhhhhh
Q 001615 434 ILMSATINADL---FSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNS---KLDSFQGNSRRSRRQDS-KKDHLTA 506 (1044)
Q Consensus 434 ilmSATl~~~~---~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~ 506 (1044)
++++||+.... =-.||++.| +..|-+++.+......... ....+.. ..+.....+ ..+..-+
T Consensus 314 ~gLTATP~~~~d~~T~~~F~g~P----------t~~YsleeAV~DGfLvpy~vi~i~~~~~~-~G~~~~~~serek~~g~ 382 (875)
T COG4096 314 QGLTATPKETIDRSTYGFFNGEP----------TYAYSLEEAVEDGFLVPYKVIRIDTDFDL-DGWKPDAGSEREKLQGE 382 (875)
T ss_pred HhhccCcccccccccccccCCCc----------ceeecHHHHhhccccCCCCceEEeeeccc-cCcCcCccchhhhhhcc
Confidence 44599985542 225674433 3344444443322111100 0000000 000000000 0000000
Q ss_pred hhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhc--cC--CCCEEEEeCCHHHHHHHHHHHHccccCCC
Q 001615 507 LFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRH--EG--DGAILVFLTGWNDISKLLDQIKVNKFLGD 582 (1044)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~--~~--~g~iLVFl~~~~~i~~l~~~L~~~~~~~~ 582 (1044)
...+. ..+|.... ++....-....+.+...+.+.+.. .. .+++||||.+..+++.+.+.|.....-
T Consensus 383 ~i~~d--d~~~~~~d------~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype-- 452 (875)
T COG4096 383 AIDED--DQNFEARD------FDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPE-- 452 (875)
T ss_pred ccCcc--cccccccc------cchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcc--
Confidence 00000 00000000 000000011224466666666654 22 579999999999999999999864322
Q ss_pred CCCeEEEEecCCCChHHHHhhhCCC--CCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccH
Q 001615 583 PNKFLVLPLHGSMPTINQREIFDRP--PPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISK 660 (1044)
Q Consensus 583 ~~~~~i~~lH~~l~~~er~~v~~~f--~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~ 660 (1044)
..+--+..+.++-...++ .+ +.| ++.--+|.++.+.+.||||+|.|..+|-.-..+ |+
T Consensus 453 ~~~~~a~~IT~d~~~~q~-~I-d~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~Vr------------------Sk 512 (875)
T COG4096 453 YNGRYAMKITGDAEQAQA-LI-DNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVR------------------SK 512 (875)
T ss_pred ccCceEEEEeccchhhHH-HH-HHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhh------------------hH
Confidence 122334455555443332 22 222 233458999999999999999999999766666 88
Q ss_pred hhHHHhcccCCCCCC--c------EEEEecCh---hhHhhcCCCCCCccccCChHHHHHHHH
Q 001615 661 ASAHQRRGRAGRVQP--G------VCYKLYPR---IIHDAMLPYQLPEILRTPLQELCLHIK 711 (1044)
Q Consensus 661 a~~~QR~GRAGR~~~--G------~c~~L~t~---~~~~~l~~~~~pei~r~~L~~~~L~~k 711 (1044)
.-|+|++||+-|..+ | ..|.+|.- -.|-.|.+...++-.+..|+.=++...
T Consensus 513 tkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~~~~~~~~~~~~~e~~~~~~l~~rLF~~~ 574 (875)
T COG4096 513 TKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFVDNTEYFEMDPEMREGRVRVSLEQRLFADR 574 (875)
T ss_pred HHHHHHhcCccccCccccCccccceeEEEEEhhhhhhhhccCcccccccccchHHHHHhhhh
Confidence 899999999999833 3 24555542 234456666666666666665444443
No 112
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.72 E-value=1.9e-16 Score=184.93 Aligned_cols=163 Identities=24% Similarity=0.294 Sum_probs=115.0
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC-C-
Q 001615 281 LPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN-L- 358 (1044)
Q Consensus 281 lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~-~- 358 (1044)
+.+..+|.+.++.+..+..++|+|||.+|||+. +.+.+|..+.... ...+|++.|+++|+.|++..|...+... .
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfi-sfY~iEKVLResD--~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFI-SFYAIEKVLRESD--SDVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceec-cHHHHHHHHhhcC--CCEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 556679999999999999999999999999954 4566666665432 4578999999999999988776655221 1
Q ss_pred -CcEE-EEEEeccccCCCCccEEEEchHHHHHHHhcCC----CCCccceEEechhhhccchh-HHHHHHHHHHcccCCcc
Q 001615 359 -GETV-GYQIRLESKRSAQTRLLFCTTGVLLRQLVEDP----DLSCVSHLLVDEIHERGMNE-DFLLIILRDLLPRRPDL 431 (1044)
Q Consensus 359 -g~~v-gy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~----~L~~~~~lIiDEaHeR~~~~-d~ll~~lk~~~~~~~~~ 431 (1044)
|.+. |--.+.-+...-+|+|+|+-|+.|-.+|.+.| +..++++||+||+|.-+-.. +.+...+-.+ -..
T Consensus 587 rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l----i~C 662 (1330)
T KOG0949|consen 587 RGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL----IPC 662 (1330)
T ss_pred cchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh----cCC
Confidence 2211 11111111112278999999999998888743 78999999999999644332 2222222112 235
Q ss_pred cEEEcccCC-ChHHHHhhhC
Q 001615 432 RLILMSATI-NADLFSKYFG 450 (1044)
Q Consensus 432 qiilmSATl-~~~~~~~~f~ 450 (1044)
-+|++|||+ |++.|..|+.
T Consensus 663 P~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 663 PFLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred CeeEEecccCCHHHHHHHHH
Confidence 689999999 7888999986
No 113
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.72 E-value=1.2e-17 Score=158.52 Aligned_cols=108 Identities=39% Similarity=0.568 Sum_probs=74.2
Q ss_pred HHHHHHHHhcCCccCCCCCC-----CCCCCCCCHHHHHHHHHHhccCcccccccCCcceeEEec-cCceEEeCCCCcCCC
Q 001615 864 SQFLDLLSDIGFVDKSKGPS-----AYNRYSHDLEMVCAILCAGLYPNVVQCKRKGKRAVFYTK-EVGQVALHPSSVNAN 937 (1044)
Q Consensus 864 ~ql~~~l~~~~~~~~~~~~~-----~~n~~~~~~~~v~~~L~ag~ypnva~~~~~g~~~~~~t~-~~~~v~iHPsSvl~~ 937 (1044)
+||.++|+++||+..+.... ..|.+..++++++++||+|||||+|+...++. +.+. .+..|+|||+|++++
T Consensus 1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~~~~~---y~~~~~~~~v~iHPsS~l~~ 77 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRDNKGS---YKTLSNGQPVFIHPSSVLFK 77 (114)
T ss_dssp HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE-TTSS---EEETTTG-EEEE-TTSTTTT
T ss_pred CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeCCCCC---EEEecCCCEEEEecCccccc
Confidence 59999999999986543211 11222356789999999999999997654332 3444 555899999999965
Q ss_pred CCCCCCCEEEEEEeeeccccccccccccChHHHHHhcCCC
Q 001615 938 QNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNL 977 (1044)
Q Consensus 938 ~~~~~~~~ivy~e~~~ts~~~i~~~t~I~~~~lllfgg~~ 977 (1044)
.+++||||+|+++|++.||++||.|+|.||++||+++
T Consensus 78 ---~~p~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~~~~ 114 (114)
T PF07717_consen 78 ---KPPKWVVYHELVRTSKPYMRDVTAISPEWLLLFAPHY 114 (114)
T ss_dssp ---TT-SEEEEEEEEESSSEEEEEEEE--HHHHHHH-TTT
T ss_pred ---cccccchhhhheecCCcEEEECcCCCHHHHHHHcccC
Confidence 3568999999999999999999999999999999864
No 114
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=3.2e-16 Score=188.40 Aligned_cols=121 Identities=18% Similarity=0.166 Sum_probs=95.3
Q ss_pred chHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEE
Q 001615 283 AFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETV 362 (1044)
Q Consensus 283 i~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~v 362 (1044)
++++|.++++.+..++++|+.++||+|||+++.++++..++.. ..++|++|+|+||.|+++.+... ...+|.++
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g-----~~v~IVTpTrELA~Qdae~m~~L-~k~lGLsV 166 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG-----KPVHLVTVNDYLAQRDCEWVGSV-LRWLGLTT 166 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc-----CCeEEEeCCHHHHHHHHHHHHHH-HhhcCCeE
Confidence 8899999999999999999999999999999999999887642 13778889999999999877654 33456666
Q ss_pred EEEEec---ccc-CCCCccEEEEchHHH-HHHHhcCC-CCC-------ccceEEechhhh
Q 001615 363 GYQIRL---ESK-RSAQTRLLFCTTGVL-LRQLVEDP-DLS-------CVSHLLVDEIHE 409 (1044)
Q Consensus 363 gy~ir~---~~~-~~~~~~I~v~T~g~L-l~~l~~~~-~L~-------~~~~lIiDEaHe 409 (1044)
+.-+.. +.+ ..-+++|+|+|||+| +++|..+. .++ .+.++||||||.
T Consensus 167 ~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADs 226 (970)
T PRK12899 167 GVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDS 226 (970)
T ss_pred EEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhh
Confidence 654322 111 112589999999999 99988763 343 558999999994
No 115
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.71 E-value=1.4e-17 Score=153.82 Aligned_cols=92 Identities=51% Similarity=0.873 Sum_probs=68.9
Q ss_pred HHHHHHHHcCCCCCCCCcCccccccccccCChhhHHHHHHhhhccChHHHHHHHhcccCCCccccCcchHHHHH--HHHh
Q 001615 736 NAIELLKTIGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVD--EAKR 813 (1044)
Q Consensus 736 ~al~~L~~lgal~~~~~lT~lG~~l~~lpl~p~~~k~ll~~~~~~c~~~~l~iaa~l~~~~~f~~p~~~~~~~~--~~~~ 813 (1044)
+|++.|+.+||||++++||++|+.|+.||++|++||||++|+.++|++++++|||+|++++||..|.+.++..+ ..++
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~~ 80 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAKK 80 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HHH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999876544333 3444
Q ss_pred hc--------CCCCCCcHHHHH
Q 001615 814 SF--------AGDSCSDHIALL 827 (1044)
Q Consensus 814 ~~--------~~~~~sD~l~~l 827 (1044)
+| ..+..|||+++|
T Consensus 81 ~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 81 KFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp TT----------BTTBHHHHHH
T ss_pred HhhhhhcccccCCCCCCHHhcC
Confidence 44 235689999986
No 116
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.62 E-value=2.2e-14 Score=175.85 Aligned_cols=346 Identities=12% Similarity=0.093 Sum_probs=177.0
Q ss_pred hHHHHHHHHHH----Hc------CCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHH
Q 001615 284 FKMKAEFLKAV----AE------NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSE 353 (1044)
Q Consensus 284 ~~~Q~~~i~~i----~~------~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~ 353 (1044)
..+|..++..+ .+ .+..+|+.+||||||......+.. ++. ....++||+++||++|..|+.+.+...
T Consensus 240 r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~-l~~--~~~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 240 RYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARK-ALE--LLKNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHH-HHh--hcCCCeEEEEECcHHHHHHHHHHHHhh
Confidence 45676666654 22 357999999999999655544433 222 223568999999999999999988775
Q ss_pred hCCCCCcEEEEEEecccc-CCCCccEEEEchHHHHHHHhcCC---CCCcc-ceEEechhhhccchhHHHHHHHHHHcccC
Q 001615 354 RGENLGETVGYQIRLESK-RSAQTRLLFCTTGVLLRQLVEDP---DLSCV-SHLLVDEIHERGMNEDFLLIILRDLLPRR 428 (1044)
Q Consensus 354 ~~~~~g~~vgy~ir~~~~-~~~~~~I~v~T~g~Ll~~l~~~~---~L~~~-~~lIiDEaHeR~~~~d~ll~~lk~~~~~~ 428 (1044)
....+ ..++..-.+... ......|+|+|.+.|.+.+.... ....- -+||+|||| |+...++... ++ ...
T Consensus 317 ~~~~~-~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaH-rs~~~~~~~~-l~---~~~ 390 (667)
T TIGR00348 317 QKDCA-ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAH-RSQYGELAKN-LK---KAL 390 (667)
T ss_pred CCCCC-cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCc-cccchHHHHH-HH---hhC
Confidence 43211 011100000011 12246899999999987543211 11111 289999999 7665543322 22 234
Q ss_pred CcccEEEcccCCCh----HHHHhhhCCCCeecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccc-hhh
Q 001615 429 PDLRLILMSATINA----DLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSK-KDH 503 (1044)
Q Consensus 429 ~~~qiilmSATl~~----~~~~~~f~~~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 503 (1044)
|+...++||||+-. ..+ ..|+.. .| -++..+-+.+.++.. +... .. +............+ ...
T Consensus 391 p~a~~lGfTaTP~~~~d~~t~-~~f~~~-----fg--~~i~~Y~~~~AI~dG-~~~~--i~-Y~~~~~~~~~~~~~l~~~ 458 (667)
T TIGR00348 391 KNASFFGFTGTPIFKKDRDTS-LTFAYV-----FG--RYLHRYFITDAIRDG-LTVK--ID-YEDRLPEDHLDRKKLDAF 458 (667)
T ss_pred CCCcEEEEeCCCccccccccc-ccccCC-----CC--CeEEEeeHHHHhhcC-Ceee--EE-EEecchhhccChHHHHHH
Confidence 67899999999832 111 222210 00 012223333333221 0000 00 00000000000000 000
Q ss_pred hhhhhhcccccccccchhhhhHHHHHh----hhhhhhch----HHHHHHHHHHHhcc--CCCCEEEEeCCHHHHHHHHHH
Q 001615 504 LTALFEDVDIDSNYKNYRASTRASLEA----WSAEQIDL----GLVESTIEYICRHE--GDGAILVFLTGWNDISKLLDQ 573 (1044)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----~li~~~l~~i~~~~--~~g~iLVFl~~~~~i~~l~~~ 573 (1044)
+...+++.. ..+.......++. ...-..+. .....++.+..... ..++.+|||.++..+..+++.
T Consensus 459 ~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~ 533 (667)
T TIGR00348 459 FDEIFELLP-----ERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNA 533 (667)
T ss_pred HHHHHHhhh-----ccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHH
Confidence 111111000 0000001111110 00000011 11222333332222 258999999999999999998
Q ss_pred HHccccCCCCCCeEEEEecCCCChH---------------------HHHhhhCCCCC-CCcEEEEeecccccccCCCCeE
Q 001615 574 IKVNKFLGDPNKFLVLPLHGSMPTI---------------------NQREIFDRPPP-NKRKIVLATNIAESSITIDDVV 631 (1044)
Q Consensus 574 L~~~~~~~~~~~~~i~~lH~~l~~~---------------------er~~v~~~f~~-g~~kIlvaTniae~GidIp~V~ 631 (1044)
|...... ......+.++++...+ ..+.+.+.|+. +..+|||.++.+-||+|.|.+.
T Consensus 534 l~~~~~~--~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~ 611 (667)
T TIGR00348 534 LDEELNE--KFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILN 611 (667)
T ss_pred HHhhccc--ccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccc
Confidence 8653111 0012334444443221 12356677765 6789999999999999999998
Q ss_pred EEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC-CCc
Q 001615 632 YVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPG 676 (1044)
Q Consensus 632 ~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G 676 (1044)
+++-.-..+ . ..++|.+||+-|. .+|
T Consensus 612 tLyldKplk-~------------------h~LlQai~R~nR~~~~~ 638 (667)
T TIGR00348 612 TLYLDKPLK-Y------------------HGLLQAIARTNRIDGKD 638 (667)
T ss_pred eEEEecccc-c------------------cHHHHHHHHhccccCCC
Confidence 887533223 1 2689999999994 444
No 117
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.60 E-value=8.5e-14 Score=173.44 Aligned_cols=120 Identities=14% Similarity=0.145 Sum_probs=96.1
Q ss_pred HHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCC---CCcEEEEe
Q 001615 541 VESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPP---NKRKIVLA 617 (1044)
Q Consensus 541 i~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~---g~~kIlva 617 (1044)
+..++..+. ..+.+||||+......+.|.+.|.. .++....+||+++..+|..+++.|.. +..-+|+|
T Consensus 476 LdkLL~~Lk--~~g~KVLIFSQft~~LdiLed~L~~-------~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLS 546 (1033)
T PLN03142 476 LDKLLPKLK--ERDSRVLIFSQMTRLLDILEDYLMY-------RGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLS 546 (1033)
T ss_pred HHHHHHHHH--hcCCeEEeehhHHHHHHHHHHHHHH-------cCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEe
Confidence 333444433 3467999999988888888888875 46678889999999999999999964 34467999
Q ss_pred ecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC---CCcEEEEecChhhH
Q 001615 618 TNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV---QPGVCYKLYPRIIH 687 (1044)
Q Consensus 618 Tniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~---~~G~c~~L~t~~~~ 687 (1044)
|.++..|||+...++||.++.+- +.+...|++||+-|- ++=.+|+|+++...
T Consensus 547 TrAGGlGINLt~Ad~VIiyD~dW------------------NP~~d~QAidRaHRIGQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 547 TRAGGLGINLATADIVILYDSDW------------------NPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred ccccccCCchhhCCEEEEeCCCC------------------ChHHHHHHHHHhhhcCCCceEEEEEEEeCCcH
Confidence 99999999999999999999886 344889999999888 33468899987643
No 118
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.59 E-value=1.5e-15 Score=138.12 Aligned_cols=91 Identities=51% Similarity=0.797 Sum_probs=81.2
Q ss_pred HHHHHHHHcCCCCCCCCcCccccccccccCChhhHHHHHHhhhc-cChHHHHHHHhcccCCCccccCcchHHHHHHHHhh
Q 001615 736 NAIELLKTIGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIF-QCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRS 814 (1044)
Q Consensus 736 ~al~~L~~lgal~~~~~lT~lG~~l~~lpl~p~~~k~ll~~~~~-~c~~~~l~iaa~l~~~~~f~~p~~~~~~~~~~~~~ 814 (1044)
+|++.|+.+||||++++||++|+.|+.||++|++||||+.|+.+ +|.+++++|+|+++..++|..+ ..+.+....++.
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~~ 79 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARRR 79 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999 9999999999999999998766 566677778888
Q ss_pred cCCCCCCcHHHHH
Q 001615 815 FAGDSCSDHIALL 827 (1044)
Q Consensus 815 ~~~~~~sD~l~~l 827 (1044)
|.....|||++++
T Consensus 80 ~~~~~~~D~~~~l 92 (92)
T smart00847 80 FASGRESDHLTLL 92 (92)
T ss_pred ccCCCCCChhhhC
Confidence 8753279999864
No 119
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.56 E-value=2.2e-13 Score=172.35 Aligned_cols=134 Identities=18% Similarity=0.108 Sum_probs=88.2
Q ss_pred HHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecc
Q 001615 541 VESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNI 620 (1044)
Q Consensus 541 i~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTni 620 (1044)
+...+..+... .+|++|||+++.+.++.+++.|...... .++.++. .+.. ..|.++++.|+.+...||++|+.
T Consensus 662 ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~~---~~~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~s 734 (850)
T TIGR01407 662 IASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPEF---EGYEVLA--QGIN-GSRAKIKKRFNNGEKAILLGTSS 734 (850)
T ss_pred HHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhccc---cCceEEe--cCCC-ccHHHHHHHHHhCCCeEEEEcce
Confidence 44455555533 4589999999999999999999752111 2233333 2222 46788899999999999999999
Q ss_pred cccccCCCCeE--EEEeCCCCcceecccccc----------ccccccc--cccHhhHHHhcccCCCCC--CcEEEEe
Q 001615 621 AESSITIDDVV--YVVDCGKAKETSYDALNK----------LACLLPS--WISKASAHQRRGRAGRVQ--PGVCYKL 681 (1044)
Q Consensus 621 ae~GidIp~V~--~VId~g~~k~~~yd~~~~----------~~~l~~~--~iS~a~~~QR~GRAGR~~--~G~c~~L 681 (1044)
+.+|||+|+.. .||-.++|-..--||... -...... |-..-...|-+||.=|.. .|..+.|
T Consensus 735 f~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 735 FWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVIL 811 (850)
T ss_pred eecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEE
Confidence 99999999765 777788886433222111 1111111 112346889999999983 4665544
No 120
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.54 E-value=6.3e-13 Score=157.95 Aligned_cols=283 Identities=18% Similarity=0.218 Sum_probs=183.9
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHH
Q 001615 271 GKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARV 350 (1044)
Q Consensus 271 ~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv 350 (1044)
+.++.+.-...++|..|.-=..-+..|+..-|+||||.||||--..+.+-.+. + +.+++++.||+.|+.|+++++
T Consensus 71 ~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~---k--gkr~yii~PT~~Lv~Q~~~kl 145 (1187)
T COG1110 71 FEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK---K--GKRVYIIVPTTTLVRQVYERL 145 (1187)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh---c--CCeEEEEecCHHHHHHHHHHH
Confidence 33455555666889999988888999999999999999999876665554432 2 357888889999999999999
Q ss_pred HHHhCC--CCCcEEEEEEecc---------ccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhh---ccchhHH
Q 001615 351 SSERGE--NLGETVGYQIRLE---------SKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHE---RGMNEDF 416 (1044)
Q Consensus 351 ~~~~~~--~~g~~vgy~ir~~---------~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHe---R~~~~d~ 416 (1044)
.+.... .....+.|+-... ...+.+.+|+|+|.+.|...+..=.. -++++|++|++|- .+-+.|-
T Consensus 146 ~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNvDr 224 (1187)
T COG1110 146 KKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK-LKFDFIFVDDVDAILKASKNVDR 224 (1187)
T ss_pred HHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc-cCCCEEEEccHHHHHhccccHHH
Confidence 876422 1223333543211 11234689999999998876643222 3689999999993 2233332
Q ss_pred HHHH----------------HHHHc----------------------ccCCcccEEEcccCCChH-----HHHhhhCCCC
Q 001615 417 LLII----------------LRDLL----------------------PRRPDLRLILMSATINAD-----LFSKYFGNAP 453 (1044)
Q Consensus 417 ll~~----------------lk~~~----------------------~~~~~~qiilmSATl~~~-----~~~~~f~~~~ 453 (1044)
++.+ ++.-+ .....-++|++|||..+. .|...++
T Consensus 225 iL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg--- 301 (1187)
T COG1110 225 LLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG--- 301 (1187)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC---
Confidence 2221 11111 112345789999998443 3555553
Q ss_pred eecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhh
Q 001615 454 TVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSA 533 (1044)
Q Consensus 454 ~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1044)
+.+.+. ..++.++... +.. .
T Consensus 302 -FevG~~-----~~~LRNIvD~--------------------------------y~~------------~---------- 321 (1187)
T COG1110 302 -FEVGSG-----GEGLRNIVDI--------------------------------YVE------------S---------- 321 (1187)
T ss_pred -CccCcc-----chhhhheeee--------------------------------ecc------------C----------
Confidence 111110 1111111000 000 0
Q ss_pred hhhchHHHHHHHHHHHhccCCCCEEEEeCC---HHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCC
Q 001615 534 EQIDLGLVESTIEYICRHEGDGAILVFLTG---WNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPN 610 (1044)
Q Consensus 534 ~~~~~~li~~~l~~i~~~~~~g~iLVFl~~---~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g 610 (1044)
..+..++..+- .- +...|||+|. ++.++.+++.|+. .++.+..+|+. .++.++.|..|
T Consensus 322 -----~~~e~~~elvk-~l-G~GgLIfV~~d~G~e~aeel~e~Lr~-------~Gi~a~~~~a~-----~~~~le~F~~G 382 (1187)
T COG1110 322 -----ESLEKVVELVK-KL-GDGGLIFVPIDYGREKAEELAEYLRS-------HGINAELIHAE-----KEEALEDFEEG 382 (1187)
T ss_pred -----ccHHHHHHHHH-Hh-CCCeEEEEEcHHhHHHHHHHHHHHHh-------cCceEEEeecc-----chhhhhhhccC
Confidence 00222222222 11 2346999999 8999999999997 67888889973 36788999999
Q ss_pred CcEEEEee----cccccccCCC-CeEEEEeCCCCcc
Q 001615 611 KRKIVLAT----NIAESSITID-DVVYVVDCGKAKE 641 (1044)
Q Consensus 611 ~~kIlvaT----niae~GidIp-~V~~VId~g~~k~ 641 (1044)
...|+|.. .++-||||+| -|+|+|-+|.||.
T Consensus 383 eidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~ 418 (1187)
T COG1110 383 EVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKF 418 (1187)
T ss_pred ceeEEEEecccccceeecCCchhheeEEEEecCCce
Confidence 99999876 5899999999 5789999999964
No 121
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.52 E-value=2.5e-13 Score=141.62 Aligned_cols=156 Identities=25% Similarity=0.192 Sum_probs=113.4
Q ss_pred CCCchHHHHHHHHHHHcC-CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC
Q 001615 280 KLPAFKMKAEFLKAVAEN-QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENL 358 (1044)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~-~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~ 358 (1044)
..+++++|.++++.+.+. ++++++++||||||+.+..++++..... ...+++++.|++.++.|+.+++........
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~---~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 82 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG---KGKRVLVLVPTRELAEQWAEELKKLGPSLG 82 (201)
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc---CCCcEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 346688999999999998 9999999999999999999988876432 135799999999999999999887765422
Q ss_pred CcEEEEEEecc-----ccCCCC-ccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccc--hhHHHHHHHHHHcccCC
Q 001615 359 GETVGYQIRLE-----SKRSAQ-TRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGM--NEDFLLIILRDLLPRRP 429 (1044)
Q Consensus 359 g~~vgy~ir~~-----~~~~~~-~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~--~~d~ll~~lk~~~~~~~ 429 (1044)
........... .....+ .+++++|++.+.+.+.... ....+++|||||+|+... ..+.+..++.. ..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~---~~~ 159 (201)
T smart00487 83 LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKL---LPK 159 (201)
T ss_pred eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHh---CCc
Confidence 12221111111 012223 3999999999999998765 677899999999997432 22333333332 246
Q ss_pred cccEEEcccCCC
Q 001615 430 DLRLILMSATIN 441 (1044)
Q Consensus 430 ~~qiilmSATl~ 441 (1044)
..++++||||++
T Consensus 160 ~~~~v~~saT~~ 171 (201)
T smart00487 160 NVQLLLLSATPP 171 (201)
T ss_pred cceEEEEecCCc
Confidence 789999999994
No 122
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.51 E-value=2.6e-13 Score=151.18 Aligned_cols=281 Identities=18% Similarity=0.183 Sum_probs=170.3
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCC
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQ 375 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~ 375 (1044)
..+.++-+|||.||||+-+++-+.+. ..-++.-|.|.||.+|++|+.+ .|.......|-..++.......
T Consensus 190 ~RkIi~H~GPTNSGKTy~ALqrl~~a---------ksGvycGPLrLLA~EV~~r~na-~gipCdL~TGeE~~~~~~~~~~ 259 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYRALQRLKSA---------KSGVYCGPLRLLAHEVYDRLNA-LGIPCDLLTGEERRFVLDNGNP 259 (700)
T ss_pred hheEEEEeCCCCCchhHHHHHHHhhh---------ccceecchHHHHHHHHHHHhhh-cCCCccccccceeeecCCCCCc
Confidence 35568889999999998776655442 2346668999999999999954 5666555556555544333334
Q ss_pred ccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccC-CcccEEEcccCCChHHHHhhhCCCCe
Q 001615 376 TRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRR-PDLRLILMSATINADLFSKYFGNAPT 454 (1044)
Q Consensus 376 ~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~-~~~qiilmSATl~~~~~~~~f~~~~~ 454 (1044)
+..+-||-+|.- .-..|.+.||||++. +-+.+--.++.+.++-.. ..+.+.+=-|-++ ...+.
T Consensus 260 a~hvScTVEM~s-------v~~~yeVAViDEIQm-m~Dp~RGwAWTrALLGl~AdEiHLCGepsvld--lV~~i------ 323 (700)
T KOG0953|consen 260 AQHVSCTVEMVS-------VNTPYEVAVIDEIQM-MRDPSRGWAWTRALLGLAADEIHLCGEPSVLD--LVRKI------ 323 (700)
T ss_pred ccceEEEEEEee-------cCCceEEEEehhHHh-hcCcccchHHHHHHHhhhhhhhhccCCchHHH--HHHHH------
Confidence 667788887653 124689999999993 222221122222222110 1111111000000 00000
Q ss_pred ecCCCCccccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhh
Q 001615 455 VHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAE 534 (1044)
Q Consensus 455 i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1044)
....|..+.| ++.+ ..++
T Consensus 324 ~k~TGd~vev--~~Ye------------------------------------------------Rl~p------------ 341 (700)
T KOG0953|consen 324 LKMTGDDVEV--REYE------------------------------------------------RLSP------------ 341 (700)
T ss_pred HhhcCCeeEE--Eeec------------------------------------------------ccCc------------
Confidence 0011111111 1100 0000
Q ss_pred hhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCC--CCCc
Q 001615 535 QIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPP--PNKR 612 (1044)
Q Consensus 535 ~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~--~g~~ 612 (1044)
+.....++..+ ++-.+|+++|=. ++++|-.+...+... .+..+..+||+||++.|..--..|. ++..
T Consensus 342 ---L~v~~~~~~sl-~nlk~GDCvV~F-Skk~I~~~k~kIE~~------g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~ 410 (700)
T KOG0953|consen 342 ---LVVEETALGSL-SNLKPGDCVVAF-SKKDIFTVKKKIEKA------GNHKCAVIYGSLPPETRLAQAALFNDPSNEC 410 (700)
T ss_pred ---ceehhhhhhhh-ccCCCCCeEEEe-ehhhHHHHHHHHHHh------cCcceEEEecCCCCchhHHHHHHhCCCCCcc
Confidence 00001111222 233456666533 788999999999864 3445788999999987755545554 4899
Q ss_pred EEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC----CCcEEEEecChh
Q 001615 613 KIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV----QPGVCYKLYPRI 685 (1044)
Q Consensus 613 kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~----~~G~c~~L~t~~ 685 (1044)
+|+||||...+|+|+ +|+-||-+.+.| |+ .-.+..|+.++..|-+|||||. ..|....|+.++
T Consensus 411 dvlVAsDAIGMGLNL-~IrRiiF~sl~K---ys------g~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 411 DVLVASDAIGMGLNL-NIRRIIFYSLIK---YS------GRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred ceEEeeccccccccc-ceeEEEEeeccc---CC------cccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 999999999999999 688898888777 44 2346678888999999999998 358888888775
No 123
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.47 E-value=3.2e-13 Score=163.22 Aligned_cols=119 Identities=18% Similarity=0.202 Sum_probs=97.3
Q ss_pred HHHHHHHHHh-ccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeec
Q 001615 541 VESTIEYICR-HEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATN 619 (1044)
Q Consensus 541 i~~~l~~i~~-~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTn 619 (1044)
...++..+.. ...+.+|||||.+++..+.+.+.|.. .++....||+ .+.+|+..+..|..+...|+||||
T Consensus 584 ~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~-------~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATN 654 (1025)
T PRK12900 584 YNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRA-------KRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATN 654 (1025)
T ss_pred HHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHH-------cCCCceeecC--CHHHhHHHHHHhcCCCCeEEEecc
Confidence 3344444432 23567999999999999999999987 3555667897 578888899999999999999999
Q ss_pred ccccccCCC---CeE-----EEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC-CCcEEEEecChhh
Q 001615 620 IAESSITID---DVV-----YVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (1044)
Q Consensus 620 iae~GidIp---~V~-----~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t~~~ 686 (1044)
+|+||+||+ +|. +||++..|. |+..|.||+|||||. .||.+..+++.++
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhe------------------s~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHE------------------SRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCc------------------hHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 999999999 564 458888887 555899999999999 8999999998754
No 124
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.46 E-value=7.2e-13 Score=129.86 Aligned_cols=137 Identities=34% Similarity=0.366 Sum_probs=98.2
Q ss_pred CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccC-----
Q 001615 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKR----- 372 (1044)
Q Consensus 298 ~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~----- 372 (1044)
+++++.++||+|||+++..++.+.... +...+++|++|++.++.|..+.+...... +..+.+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~---~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS---LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKL 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc---ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHH
Confidence 468999999999999999888886643 23468999999999999999988877653 34444443333222
Q ss_pred -CCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccCC
Q 001615 373 -SAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATI 440 (1044)
Q Consensus 373 -~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSATl 440 (1044)
....+|+++|++.+.+.+.... ....+++|||||+|.- .................+..+++++|||+
T Consensus 76 ~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~-~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 76 LSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRL-LNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHH-hhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 3578999999999998887654 4567899999999952 22222221122333345678999999995
No 125
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.42 E-value=4.7e-13 Score=162.22 Aligned_cols=120 Identities=21% Similarity=0.203 Sum_probs=103.8
Q ss_pred HHHHHHHHHhc-cCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeec
Q 001615 541 VESTIEYICRH-EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATN 619 (1044)
Q Consensus 541 i~~~l~~i~~~-~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTn 619 (1044)
+..++..|... ..+.++|||+++++.++.+++.|.. .++.+..+||++++.+|.++++.|+.|...|+|||+
T Consensus 428 i~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~-------~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~ 500 (655)
T TIGR00631 428 VDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKE-------LGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN 500 (655)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhh-------hccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC
Confidence 34455555432 3467899999999999999999987 456788899999999999999999999999999999
Q ss_pred ccccccCCCCeEEEEeCC-----CCcceeccccccccccccccccHhhHHHhcccCCCCCCcEEEEecChh
Q 001615 620 IAESSITIDDVVYVVDCG-----KAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRI 685 (1044)
Q Consensus 620 iae~GidIp~V~~VId~g-----~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~~G~c~~L~t~~ 685 (1044)
++++|+|+|++++||.++ +|+ |..+|+||+|||||..+|.|+.+++..
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~------------------~~~~~iqriGRagR~~~G~vi~~~~~~ 553 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLR------------------SERSLIQTIGRAARNVNGKVIMYADKI 553 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCC------------------CHHHHHHHhcCCCCCCCCEEEEEEcCC
Confidence 999999999999999877 565 555999999999999999999888753
No 126
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.41 E-value=7.8e-13 Score=128.55 Aligned_cols=104 Identities=25% Similarity=0.363 Sum_probs=94.6
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEE
Q 001615 553 GDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVY 632 (1044)
Q Consensus 553 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~ 632 (1044)
.++++|||+++...++.+++.|.. ....+..+||+++..+|..+++.|..+..+||++|+++++|+|+|++++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~ 99 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRK-------PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSV 99 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh-------cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCE
Confidence 578999999999999999999986 4567999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC-CCcEEEEe
Q 001615 633 VVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKL 681 (1044)
Q Consensus 633 VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L 681 (1044)
||.++.+. +...+.|++||+||. +.|.|+.+
T Consensus 100 vi~~~~~~------------------~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 100 VINYDLPW------------------SPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred EEEeCCCC------------------CHHHheecccccccCCCCceEEeC
Confidence 99988876 566999999999999 57888753
No 127
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.38 E-value=4.5e-12 Score=120.70 Aligned_cols=136 Identities=18% Similarity=0.214 Sum_probs=87.9
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEecc-ccCCC
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLE-SKRSA 374 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~-~~~~~ 374 (1044)
+++..+|...+|+|||+.++--++.+.+.. ..++||+.|||.+|..+++.+. +..+.++...- .....
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~----~~rvLvL~PTRvva~em~~aL~-------~~~~~~~t~~~~~~~~g 71 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR----RLRVLVLAPTRVVAEEMYEALK-------GLPVRFHTNARMRTHFG 71 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT----T--EEEEESSHHHHHHHHHHTT-------TSSEEEESTTSS----S
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc----cCeEEEecccHHHHHHHHHHHh-------cCCcccCceeeeccccC
Confidence 567789999999999997544444444442 4699999999999988876553 22355553332 12234
Q ss_pred CccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccCCChH
Q 001615 375 QTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINAD 443 (1044)
Q Consensus 375 ~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSATl~~~ 443 (1044)
+.-|.++|.+.+.+.+.....+.++++||+||||--+..+=.....++..... ...++|.||||.+..
T Consensus 72 ~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~-g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 72 SSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES-GEAKVIFMTATPPGS 139 (148)
T ss_dssp SSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT-TS-EEEEEESS-TT-
T ss_pred CCcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhc-cCeeEEEEeCCCCCC
Confidence 66799999999999888755889999999999996443333344455555333 357899999998654
No 128
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.37 E-value=1.8e-12 Score=143.85 Aligned_cols=332 Identities=14% Similarity=0.021 Sum_probs=195.8
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHH--
Q 001615 273 AMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARV-- 350 (1044)
Q Consensus 273 ~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv-- 350 (1044)
+++.....-.-+.+|.+++..+.+|+++++.-.|.+||+|..-....+.... .....-++..|+.+++....+-.
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~---~~~s~~~~~~~~~~~~~~~~~~~~V 353 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL---CHATNSLLPSEMVEHLRNGSKGQVV 353 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc---CcccceecchhHHHHhhccCCceEE
Confidence 3334444445678999999999999999999999999998766555544332 12335667778887765432100
Q ss_pred ----HHHhCCCC-CcEEEEEEecccc-CCCCccEEEEchHHHHHHHhcCC-----CCCccceEEechhhhcc-chhHHHH
Q 001615 351 ----SSERGENL-GETVGYQIRLESK-RSAQTRLLFCTTGVLLRQLVEDP-----DLSCVSHLLVDEIHERG-MNEDFLL 418 (1044)
Q Consensus 351 ----~~~~~~~~-g~~vgy~ir~~~~-~~~~~~I~v~T~g~Ll~~l~~~~-----~L~~~~~lIiDEaHeR~-~~~d~ll 418 (1044)
-.++...+ ...-|..-..++. ...+.+++|..|.+.......+. .+-...++++||+|--- +......
T Consensus 354 ~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~ 433 (1034)
T KOG4150|consen 354 HVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQ 433 (1034)
T ss_pred EEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHH
Confidence 01111000 0000000000011 12367899999988766554332 34456788999999421 1111112
Q ss_pred HHHHHHcc------cCCcccEEEcccCCC--hHHHHhhhCC--CCeecCCCCccccceeehHHHHHhhhcccCccccccc
Q 001615 419 IILRDLLP------RRPDLRLILMSATIN--ADLFSKYFGN--APTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQ 488 (1044)
Q Consensus 419 ~~lk~~~~------~~~~~qiilmSATl~--~~~~~~~f~~--~~~i~v~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~ 488 (1044)
..+|.++. ...+++++-.|||+- ....++.|+- ...+++.|.+..-+...+=+ .+...
T Consensus 434 ~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WN---------P~~~P--- 501 (1034)
T KOG4150|consen 434 DQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWN---------PSAPP--- 501 (1034)
T ss_pred HHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeC---------CCCCC---
Confidence 22233222 345799999999983 3345566653 34566666543322211100 00000
Q ss_pred cccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHH
Q 001615 489 GNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDIS 568 (1044)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~ 568 (1044)
.....+...+.+ ...++..+.. .+-++|.||+.++-++
T Consensus 502 ------~~~~~~~~~i~E----------------------------------~s~~~~~~i~--~~~R~IAFC~~R~~CE 539 (1034)
T KOG4150|consen 502 ------TSKSEKSSKVVE----------------------------------VSHLFAEMVQ--HGLRCIAFCPSRKLCE 539 (1034)
T ss_pred ------cchhhhhhHHHH----------------------------------HHHHHHHHHH--cCCcEEEeccHHHHHH
Confidence 000000000000 1122222221 2457999999999888
Q ss_pred HHHHHHHccccCCC-CCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceecccc
Q 001615 569 KLLDQIKVNKFLGD-PNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDAL 647 (1044)
Q Consensus 569 ~l~~~L~~~~~~~~-~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~ 647 (1044)
-+....++...... ..--.|..+.|+-..++|+++....=.|+.+-|||||.+|-||||...+.|+.+|+|-
T Consensus 540 L~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~------- 612 (1034)
T KOG4150|consen 540 LVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPG------- 612 (1034)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCch-------
Confidence 76554432110000 0111345688999999999999998899999999999999999999999999999998
Q ss_pred ccccccccccccHhhHHHhcccCCCC-CCcEEE
Q 001615 648 NKLACLLPSWISKASAHQRRGRAGRV-QPGVCY 679 (1044)
Q Consensus 648 ~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~ 679 (1044)
|.+++.|..|||||. .+..+.
T Consensus 613 -----------S~aNl~QQ~GRAGRRNk~SLav 634 (1034)
T KOG4150|consen 613 -----------SIANLWQQAGRAGRRNKPSLAV 634 (1034)
T ss_pred -----------hHHHHHHHhccccccCCCceEE
Confidence 778999999999998 555443
No 129
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.36 E-value=1e-10 Score=142.34 Aligned_cols=167 Identities=19% Similarity=0.199 Sum_probs=98.7
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHc--------CCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHH
Q 001615 272 KAMLSFREKLPAFKMKAEFLKAVAE--------NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISA 343 (1044)
Q Consensus 272 ~~~~~~r~~lpi~~~Q~~~i~~i~~--------~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la 343 (1044)
.+-+++|..-|-|..|+.+.+.+.. |=.+|-.|.||||||.+=.-++... . ..+.++++.+..--|.|.
T Consensus 398 hk~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaL--s-d~~~g~RfsiALGLRTLT 474 (1110)
T TIGR02562 398 HKYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYAL--R-DDKQGARFAIALGLRSLT 474 (1110)
T ss_pred hhhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHh--C-CCCCCceEEEEcccccee
Confidence 3456677888999999999998865 3356678999999997654443322 1 234456776666666666
Q ss_pred HHHHHHHHHHhCCC-----------------------------CC-----------c---EEEEEEecc-----------
Q 001615 344 ISVAARVSSERGEN-----------------------------LG-----------E---TVGYQIRLE----------- 369 (1044)
Q Consensus 344 ~qva~rv~~~~~~~-----------------------------~g-----------~---~vgy~ir~~----------- 369 (1044)
.|.-...++.++.. .| . .+.|.-..+
T Consensus 475 LQTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~ 554 (1110)
T TIGR02562 475 LQTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLD 554 (1110)
T ss_pred ccchHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccC
Confidence 66554444433211 01 1 233321110
Q ss_pred ccC--CCCccEEEEchHHHHHHHhc--CC--CC----CccceEEechhhhccchhHHHHHHHHHHcc--cCCcccEEEcc
Q 001615 370 SKR--SAQTRLLFCTTGVLLRQLVE--DP--DL----SCVSHLLVDEIHERGMNEDFLLIILRDLLP--RRPDLRLILMS 437 (1044)
Q Consensus 370 ~~~--~~~~~I~v~T~g~Ll~~l~~--~~--~L----~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~--~~~~~qiilmS 437 (1044)
.+. .-...|+|||+..++..... .. .+ -.-+.|||||+|--+..+ +.+|..++. ..-..++|+||
T Consensus 555 ~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~---~~~L~rlL~w~~~lG~~VlLmS 631 (1110)
T TIGR02562 555 DKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED---LPALLRLVQLAGLLGSRVLLSS 631 (1110)
T ss_pred hhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH---HHHHHHHHHHHHHcCCCEEEEe
Confidence 000 01346999999888876632 11 11 124789999999644333 233333333 22367899999
Q ss_pred cCCChHH
Q 001615 438 ATINADL 444 (1044)
Q Consensus 438 ATl~~~~ 444 (1044)
||+++..
T Consensus 632 ATLP~~l 638 (1110)
T TIGR02562 632 ATLPPAL 638 (1110)
T ss_pred CCCCHHH
Confidence 9999874
No 130
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.36 E-value=2.8e-12 Score=156.89 Aligned_cols=123 Identities=21% Similarity=0.179 Sum_probs=103.2
Q ss_pred HHHHHHHHhc-cCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecc
Q 001615 542 ESTIEYICRH-EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNI 620 (1044)
Q Consensus 542 ~~~l~~i~~~-~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTni 620 (1044)
..++..+... ..+.++||||++++.++.+++.|.. .++.+..+||++++.+|..+++.|+.|...|+|||++
T Consensus 433 ~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~-------~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~ 505 (652)
T PRK05298 433 DDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKE-------LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINL 505 (652)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhh-------cceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCH
Confidence 3444444332 3467899999999999999999986 5678899999999999999999999999999999999
Q ss_pred cccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCCCCcEEEEecCh
Q 001615 621 AESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPR 684 (1044)
Q Consensus 621 ae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~~G~c~~L~t~ 684 (1044)
+++|+|+|++++||.++.+... .+-+..+|+||+|||||...|.|+.+++.
T Consensus 506 L~rGfdlp~v~lVii~d~eifG-------------~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEG-------------FLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred HhCCccccCCcEEEEeCCcccc-------------cCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 9999999999999998754311 01156699999999999999999999884
No 131
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.35 E-value=6.2e-13 Score=116.88 Aligned_cols=72 Identities=28% Similarity=0.392 Sum_probs=68.2
Q ss_pred CCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhH
Q 001615 584 NKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASA 663 (1044)
Q Consensus 584 ~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~ 663 (1044)
.++.+..+||++++++|..+++.|.++..+|||||+++++|||+|++++||.++.|. |..+|
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~------------------~~~~~ 67 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPW------------------SPEEY 67 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSES------------------SHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCC------------------CHHHH
Confidence 577899999999999999999999999999999999999999999999999999988 56699
Q ss_pred HHhcccCCCC
Q 001615 664 HQRRGRAGRV 673 (1044)
Q Consensus 664 ~QR~GRAGR~ 673 (1044)
.||+||+||.
T Consensus 68 ~Q~~GR~~R~ 77 (78)
T PF00271_consen 68 IQRIGRAGRI 77 (78)
T ss_dssp HHHHTTSSTT
T ss_pred HHHhhcCCCC
Confidence 9999999995
No 132
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.34 E-value=1.4e-10 Score=136.98 Aligned_cols=124 Identities=19% Similarity=0.116 Sum_probs=87.6
Q ss_pred hcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 001615 278 REKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (1044)
Q Consensus 278 r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~ 357 (1044)
--.+.+|..|--..-.+..|+ |....||+|||+.+.++++-.++. +..|-|+.|+-.||.+-++.+...+. .
T Consensus 74 ~lg~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~-----G~~VhvvT~NdyLA~RDae~m~~ly~-~ 145 (764)
T PRK12326 74 TLGLRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ-----GRRVHVITVNDYLARRDAEWMGPLYE-A 145 (764)
T ss_pred HcCCCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc-----CCCeEEEcCCHHHHHHHHHHHHHHHH-h
Confidence 344566667766666666776 679999999999988888877654 34678888999999999998876554 4
Q ss_pred CCcEEEEEEeccc----cCCCCccEEEEchHH-----HHHHHhcCC---CCCccceEEechhhh
Q 001615 358 LGETVGYQIRLES----KRSAQTRLLFCTTGV-----LLRQLVEDP---DLSCVSHLLVDEIHE 409 (1044)
Q Consensus 358 ~g~~vgy~ir~~~----~~~~~~~I~v~T~g~-----Ll~~l~~~~---~L~~~~~lIiDEaHe 409 (1044)
+|.+||+-..... +..-.++|+|+|..- |.+.+..++ ....+.+.||||||.
T Consensus 146 LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDS 209 (764)
T PRK12326 146 LGLTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADS 209 (764)
T ss_pred cCCEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhh
Confidence 6788886533211 111268999999854 444443322 456788999999994
No 133
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.32 E-value=1.3e-11 Score=148.37 Aligned_cols=155 Identities=18% Similarity=0.244 Sum_probs=106.9
Q ss_pred CCCchHHHHHHHHHHHcC----CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhC
Q 001615 280 KLPAFKMKAEFLKAVAEN----QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERG 355 (1044)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~----~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~ 355 (1044)
.+.+..-|..+++.|.+. +..++.|-||||||-.+.+.|-+.+.. +..+|+++|-..|..|+.+|+...++
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~-----GkqvLvLVPEI~Ltpq~~~rf~~rFg 270 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ-----GKQVLVLVPEIALTPQLLARFKARFG 270 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc-----CCEEEEEeccccchHHHHHHHHHHhC
Confidence 355667888899888766 789999999999999888887776532 45899999999999999999999998
Q ss_pred CCCCcEEE---EEEec---cccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHH-------HHHHHH
Q 001615 356 ENLGETVG---YQIRL---ESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDF-------LLIILR 422 (1044)
Q Consensus 356 ~~~g~~vg---y~ir~---~~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~-------ll~~lk 422 (1044)
..++..-. -..+. ....+...+|++.|---|.- -+.++++|||||=|+-+.-.+- -+++++
T Consensus 271 ~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~------Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~R 344 (730)
T COG1198 271 AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFL------PFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLR 344 (730)
T ss_pred CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcC------chhhccEEEEeccccccccCCcCCCcCHHHHHHHH
Confidence 66533211 11111 11223567899988532221 4689999999999963322110 111222
Q ss_pred HHcccCCcccEEEcccCCChHHHHhh
Q 001615 423 DLLPRRPDLRLILMSATINADLFSKY 448 (1044)
Q Consensus 423 ~~~~~~~~~qiilmSATl~~~~~~~~ 448 (1044)
....+..+|+-|||..-|.+..-
T Consensus 345 ---a~~~~~pvvLgSATPSLES~~~~ 367 (730)
T COG1198 345 ---AKKENAPVVLGSATPSLESYANA 367 (730)
T ss_pred ---HHHhCCCEEEecCCCCHHHHHhh
Confidence 12346789999999988766544
No 134
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.32 E-value=9.1e-12 Score=128.69 Aligned_cols=147 Identities=14% Similarity=0.106 Sum_probs=96.4
Q ss_pred CCchHHHHHHHHHHHc-------CCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHH
Q 001615 281 LPAFKMKAEFLKAVAE-------NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSE 353 (1044)
Q Consensus 281 lpi~~~Q~~~i~~i~~-------~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~ 353 (1044)
..++++|.+++..+.+ ++.+++.+|||||||..+..++.+... ++++++|+..++.|..+.+...
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------~~l~~~p~~~l~~Q~~~~~~~~ 73 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------KVLIVAPNISLLEQWYDEFDDF 73 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------EEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------ceeEecCHHHHHHHHHHHHHHh
Confidence 3567899999999874 689999999999999877766665531 8999999999999999888444
Q ss_pred hCCCCCcE--------EE--E------EEeccccCCCCccEEEEchHHHHHHHhcCC------------CCCccceEEec
Q 001615 354 RGENLGET--------VG--Y------QIRLESKRSAQTRLLFCTTGVLLRQLVEDP------------DLSCVSHLLVD 405 (1044)
Q Consensus 354 ~~~~~g~~--------vg--y------~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~------------~L~~~~~lIiD 405 (1044)
........ .. + ............++++.|...|........ .....++||+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~D 153 (184)
T PF04851_consen 74 GSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIID 153 (184)
T ss_dssp STTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEE
T ss_pred hhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEe
Confidence 32211000 00 0 001011123367899999999988765421 34567899999
Q ss_pred hhhhccchhHHHHHHHHHHcccCCcccEEEcccCCC
Q 001615 406 EIHERGMNEDFLLIILRDLLPRRPDLRLILMSATIN 441 (1044)
Q Consensus 406 EaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSATl~ 441 (1044)
|||+ .....-.-.+++ .+...+|+||||+.
T Consensus 154 EaH~-~~~~~~~~~i~~-----~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 154 EAHH-YPSDSSYREIIE-----FKAAFILGLTATPF 183 (184)
T ss_dssp TGGC-THHHHHHHHHHH-----SSCCEEEEEESS-S
T ss_pred hhhh-cCCHHHHHHHHc-----CCCCeEEEEEeCcc
Confidence 9995 333332222222 56778999999964
No 135
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.30 E-value=2.6e-10 Score=142.60 Aligned_cols=157 Identities=15% Similarity=0.098 Sum_probs=97.0
Q ss_pred HHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecC-CCChHHHHhhhCCCCCCCcEEEEeec
Q 001615 541 VESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHG-SMPTINQREIFDRPPPNKRKIVLATN 619 (1044)
Q Consensus 541 i~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~-~l~~~er~~v~~~f~~g~~kIlvaTn 619 (1044)
+.+.+..+. ..+|++||++++.+..+.+++.|... .+.++ ..| +.+ +.++++.|+.+...||++|.
T Consensus 636 ~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~-------~~~~l-~Qg~~~~---~~~l~~~F~~~~~~vLlG~~ 702 (820)
T PRK07246 636 IAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW-------QVSHL-AQEKNGT---AYNIKKRFDRGEQQILLGLG 702 (820)
T ss_pred HHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc-------CCcEE-EeCCCcc---HHHHHHHHHcCCCeEEEecc
Confidence 444454455 35689999999999999999998642 22332 333 222 34567788888889999999
Q ss_pred ccccccCCC--CeEEEEeCCCCcceecccccc----------ccccccc--cccHhhHHHhcccCCCCC--CcEEEEecC
Q 001615 620 IAESSITID--DVVYVVDCGKAKETSYDALNK----------LACLLPS--WISKASAHQRRGRAGRVQ--PGVCYKLYP 683 (1044)
Q Consensus 620 iae~GidIp--~V~~VId~g~~k~~~yd~~~~----------~~~l~~~--~iS~a~~~QR~GRAGR~~--~G~c~~L~t 683 (1044)
..-+|||+| +...||-.++|-..-.||... -+..... |-..-.+.|-+||.=|.. .|..+.|=.
T Consensus 703 sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~ 782 (820)
T PRK07246 703 SFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDR 782 (820)
T ss_pred hhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECC
Confidence 999999997 466677788886544443211 1111111 112346889999999983 586554422
Q ss_pred h---hhHhhcCCCCCCc---cccCChHHHHHHH
Q 001615 684 R---IIHDAMLPYQLPE---ILRTPLQELCLHI 710 (1044)
Q Consensus 684 ~---~~~~~l~~~~~pe---i~r~~L~~~~L~~ 710 (1044)
+ ..|-...-...|+ +...++.++.-.+
T Consensus 783 R~~~k~Yg~~~l~sLP~~~~~~~~~~~~~~~~~ 815 (820)
T PRK07246 783 RILTKSYGKQILASLAEEFLISQQNFSDVLVEI 815 (820)
T ss_pred cccccHHHHHHHHhCCCCCccccCCHHHHHHHH
Confidence 2 2342211223333 4456777764444
No 136
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.22 E-value=9e-10 Score=133.44 Aligned_cols=126 Identities=13% Similarity=0.125 Sum_probs=87.0
Q ss_pred hcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 001615 278 REKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (1044)
Q Consensus 278 r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~ 357 (1044)
++.|-+.+|-.+++-.+.=++--|....||+|||+.+.++++-.++. +..|-++.|+-.||.+-++.+...+. .
T Consensus 76 ~R~lGm~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~-----G~~VhvvT~ndyLA~RD~e~m~~l~~-~ 149 (913)
T PRK13103 76 KRVMGMRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALS-----GKGVHVVTVNDYLARRDANWMRPLYE-F 149 (913)
T ss_pred HHHhCCCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHHHhc-c
Confidence 34444555555566665445555889999999999988888876654 34677788999999999998877654 4
Q ss_pred CCcEEEEEEeccc----cCCCCccEEEEchHHH-HHHHhcCC-------CCCccceEEechhhh
Q 001615 358 LGETVGYQIRLES----KRSAQTRLLFCTTGVL-LRQLVEDP-------DLSCVSHLLVDEIHE 409 (1044)
Q Consensus 358 ~g~~vgy~ir~~~----~~~~~~~I~v~T~g~L-l~~l~~~~-------~L~~~~~lIiDEaHe 409 (1044)
+|.+||.-..... +..-.++|+|+|..-| .+.|+.+- ...++.++||||+|.
T Consensus 150 lGl~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDs 213 (913)
T PRK13103 150 LGLSVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDS 213 (913)
T ss_pred cCCEEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhh
Confidence 6777876432211 1112589999999775 23333222 347899999999994
No 137
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.20 E-value=2.3e-10 Score=126.04 Aligned_cols=296 Identities=13% Similarity=0.121 Sum_probs=168.4
Q ss_pred CCchHHHHHHHHHHHcC---CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 001615 281 LPAFKMKAEFLKAVAEN---QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (1044)
Q Consensus 281 lpi~~~Q~~~i~~i~~~---~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~ 357 (1044)
.-+.|||+..+...-.| +.-||+-|-|+|||+.-.-.+- .-..++||+...-..+.|+.+++.......
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~--------tikK~clvLcts~VSVeQWkqQfk~wsti~ 372 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC--------TIKKSCLVLCTSAVSVEQWKQQFKQWSTIQ 372 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee--------eecccEEEEecCccCHHHHHHHHHhhcccC
Confidence 34679999999988654 4678999999999953221110 012356666688888999988887665444
Q ss_pred CCcEEEEEEeccccCCCCccEEEEchHHHH-------------HHHhcCCCCCccceEEechhhhccchhHHHHHHHHHH
Q 001615 358 LGETVGYQIRLESKRSAQTRLLFCTTGVLL-------------RQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDL 424 (1044)
Q Consensus 358 ~g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll-------------~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~ 424 (1044)
-...+-+.-........++.|+|.|.-|+. ++|.. ...+++|+||+|- +-...+.-++..+
T Consensus 373 d~~i~rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~----~EWGllllDEVHv--vPA~MFRRVlsiv 446 (776)
T KOG1123|consen 373 DDQICRFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRG----REWGLLLLDEVHV--VPAKMFRRVLSIV 446 (776)
T ss_pred ccceEEeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhc----CeeeeEEeehhcc--chHHHHHHHHHHH
Confidence 333333332222334457889999986653 33332 4578999999994 2222222223322
Q ss_pred cccCCcccEEEcccCCChH--HHH--hhhCCCCee----------------cCCCCccccceeehHHHHHhhhcccCccc
Q 001615 425 LPRRPDLRLILMSATINAD--LFS--KYFGNAPTV----------------HIPGLTFPVTDLFLEDVLEKTRYKMNSKL 484 (1044)
Q Consensus 425 ~~~~~~~qiilmSATl~~~--~~~--~~f~~~~~i----------------~v~g~~~pv~~~~l~~~~~~~~~~~~~~~ 484 (1044)
.. ---++++||+-.+ .+. +|+-++... ....-+.|....|...++..
T Consensus 447 ~a----HcKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~--------- 513 (776)
T KOG1123|consen 447 QA----HCKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRE--------- 513 (776)
T ss_pred HH----HhhccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhh---------
Confidence 22 2346899998322 222 122111110 00111112221111111110
Q ss_pred cccccccccccccccchhhhhhhhhcccccccccchhhhhHHH--HHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeC
Q 001615 485 DSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRAS--LEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLT 562 (1044)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~ 562 (1044)
.++.. +..++.. .+. ....+-..++ ..+.+||||..
T Consensus 514 --------------------------------------~t~kr~lLyvMNP~--KFr-aCqfLI~~HE-~RgDKiIVFsD 551 (776)
T KOG1123|consen 514 --------------------------------------NTRKRMLLYVMNPN--KFR-ACQFLIKFHE-RRGDKIIVFSD 551 (776)
T ss_pred --------------------------------------hhhhhheeeecCcc--hhH-HHHHHHHHHH-hcCCeEEEEec
Confidence 00000 0001111 011 1222222232 35678999987
Q ss_pred CHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCC-CcEEEEeecccccccCCCCeEEEEeCCCCcc
Q 001615 563 GWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPN-KRKIVLATNIAESSITIDDVVYVVDCGKAKE 641 (1044)
Q Consensus 563 ~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g-~~kIlvaTniae~GidIp~V~~VId~g~~k~ 641 (1044)
..-.....+-.|.. -.++|..++.||.+|++.|..+ .++-|+-.-|+.++||+|..++.|+-.-..
T Consensus 552 nvfALk~YAikl~K------------pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~- 618 (776)
T KOG1123|consen 552 NVFALKEYAIKLGK------------PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHG- 618 (776)
T ss_pred cHHHHHHHHHHcCC------------ceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccc-
Confidence 65544444333332 1389999999999999999865 568888899999999999999999732111
Q ss_pred eeccccccccccccccccHhhHHHhcccCCCCC
Q 001615 642 TSYDALNKLACLLPSWISKASAHQRRGRAGRVQ 674 (1044)
Q Consensus 642 ~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~ 674 (1044)
=|+.+-.||.||.-|+.
T Consensus 619 ----------------GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 619 ----------------GSRRQEAQRLGRILRAK 635 (776)
T ss_pred ----------------cchHHHHHHHHHHHHHh
Confidence 15567889999998883
No 138
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.17 E-value=1e-09 Score=122.76 Aligned_cols=123 Identities=21% Similarity=0.201 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHh-ccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEe
Q 001615 539 GLVESTIEYICR-HEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLA 617 (1044)
Q Consensus 539 ~li~~~l~~i~~-~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlva 617 (1044)
..+.+++..|.. ...+.++||-+-|++.++.|.+.|.+ .++++..+||++..-||.++++..+.|...|||-
T Consensus 430 ~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e-------~gikv~YlHSdidTlER~eIirdLR~G~~DvLVG 502 (663)
T COG0556 430 GQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKE-------LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVG 502 (663)
T ss_pred CcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHh-------cCceEEeeeccchHHHHHHHHHHHhcCCccEEEe
Confidence 356677777765 24568999999999999999999998 6889999999999999999999999999999999
Q ss_pred ecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCCCCcEEEEe
Q 001615 618 TNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKL 681 (1044)
Q Consensus 618 Tniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~~G~c~~L 681 (1044)
-|.+-.|||+|.|..|.-.|.-|+--.- |-.+.+|=+|||.|.-.|+++..
T Consensus 503 INLLREGLDiPEVsLVAIlDADKeGFLR-------------se~SLIQtIGRAARN~~GkvIlY 553 (663)
T COG0556 503 INLLREGLDLPEVSLVAILDADKEGFLR-------------SERSLIQTIGRAARNVNGKVILY 553 (663)
T ss_pred ehhhhccCCCcceeEEEEeecCcccccc-------------ccchHHHHHHHHhhccCCeEEEE
Confidence 9999999999999988755544432211 55599999999999999988743
No 139
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.16 E-value=3.8e-11 Score=106.13 Aligned_cols=79 Identities=33% Similarity=0.405 Sum_probs=71.0
Q ss_pred HHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceecccccc
Q 001615 570 LLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNK 649 (1044)
Q Consensus 570 l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~ 649 (1044)
+++.|.. .++.+..+||+++..+|..+++.|..+..+||++|+++++|+|+|++++||.++.+.
T Consensus 3 l~~~l~~-------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~--------- 66 (82)
T smart00490 3 LAELLKE-------LGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPW--------- 66 (82)
T ss_pred HHHHHHH-------CCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCC---------
Confidence 4555654 367899999999999999999999999999999999999999999999999999876
Q ss_pred ccccccccccHhhHHHhcccCCCC
Q 001615 650 LACLLPSWISKASAHQRRGRAGRV 673 (1044)
Q Consensus 650 ~~~l~~~~iS~a~~~QR~GRAGR~ 673 (1044)
+...|.|++||++|.
T Consensus 67 ---------~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 67 ---------SPASYIQRIGRAGRA 81 (82)
T ss_pred ---------CHHHHHHhhcccccC
Confidence 666999999999995
No 140
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.15 E-value=2.1e-10 Score=138.34 Aligned_cols=333 Identities=15% Similarity=0.111 Sum_probs=202.8
Q ss_pred hHHHHHHHHHHH-cCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEE
Q 001615 284 FKMKAEFLKAVA-ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETV 362 (1044)
Q Consensus 284 ~~~Q~~~i~~i~-~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~v 362 (1044)
.++|.++++.+. .+++++|.+|+|||||.++-+.++. +....+++++.|.-+.|..++....+.++.-.|..+
T Consensus 1145 n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~ 1218 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRI 1218 (1674)
T ss_pred CCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC------CccceEEEEecchHHHHHHHHHHHHHhhccccCceE
Confidence 357778888774 5778999999999999777776665 234569999999999999888777666655555544
Q ss_pred EEE---EeccccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhcc-chh---HHHHHHHHHHcccCCcccEEE
Q 001615 363 GYQ---IRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERG-MNE---DFLLIILRDLLPRRPDLRLIL 435 (1044)
Q Consensus 363 gy~---ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~-~~~---d~ll~~lk~~~~~~~~~qiil 435 (1044)
--- ...+.+.....+|+++||+..-.+ + ....+++.|.||.|.-+ .+. ..+..+.....+.-..+|++.
T Consensus 1219 ~~l~ge~s~~lkl~~~~~vii~tpe~~d~l-q---~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ 1294 (1674)
T KOG0951|consen 1219 VKLTGETSLDLKLLQKGQVIISTPEQWDLL-Q---SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVA 1294 (1674)
T ss_pred EecCCccccchHHhhhcceEEechhHHHHH-h---hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEE
Confidence 211 222333445789999999986543 2 56789999999999533 111 111221111222334688999
Q ss_pred cccCC-ChHHHHhhhCCCCeecC--CCCccccceeehHHHHHhhhcccCccccccccccccccccccchhhhhhhhhccc
Q 001615 436 MSATI-NADLFSKYFGNAPTVHI--PGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVD 512 (1044)
Q Consensus 436 mSATl-~~~~~~~~f~~~~~i~v--~g~~~pv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1044)
+|..+ ++..+ -++....+++. ..|+.|.+.+.-.- ..++..
T Consensus 1295 ls~~lana~d~-ig~s~~~v~Nf~p~~R~~Pl~i~i~~~----------------------------~~~~~~------- 1338 (1674)
T KOG0951|consen 1295 LSSSLANARDL-IGASSSGVFNFSPSVRPVPLEIHIQSV----------------------------DISHFE------- 1338 (1674)
T ss_pred eehhhccchhh-ccccccceeecCcccCCCceeEEEEEe----------------------------ccchhH-------
Confidence 98876 55555 33333444433 34445544332100 000000
Q ss_pred ccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHcc---------------
Q 001615 513 IDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVN--------------- 577 (1044)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~--------------- 577 (1044)
+... .|... ...++..+. ..+.+.+||+|+++++..++..+...
T Consensus 1339 ----------~~~~---am~~~-----~~~ai~~~a---~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~ 1397 (1674)
T KOG0951|consen 1339 ----------SRML---AMTKP-----TYTAIVRHA---GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEE 1397 (1674)
T ss_pred ----------HHHH---Hhhhh-----HHHHHHHHh---cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhc
Confidence 0000 00000 011222222 34668899999999998776654311
Q ss_pred --ccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceecccccccccccc
Q 001615 578 --KFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLP 655 (1044)
Q Consensus 578 --~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~ 655 (1044)
..+....+..|. |-+|+..+++.+-.-|..|.+.|+|...- -.|+-... ..||-.| +..||..... .
T Consensus 1398 ~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~-~lVvvmg---t~~ydg~e~~----~ 1466 (1674)
T KOG0951|consen 1398 CDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKA-HLVVVMG---TQYYDGKEHS----Y 1466 (1674)
T ss_pred chHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccc-eEEEEec---ceeecccccc----c
Confidence 011122334444 89999999999999999999999887765 66666543 3333323 4557665432 2
Q ss_pred ccccHhhHHHhcccCCCCCCcEEEEecChh---hHhhcCCCCCC
Q 001615 656 SWISKASAHQRRGRAGRVQPGVCYKLYPRI---IHDAMLPYQLP 696 (1044)
Q Consensus 656 ~~iS~a~~~QR~GRAGR~~~G~c~~L~t~~---~~~~l~~~~~p 696 (1044)
...+.++..|+.|+|.| .|.|+.+.... .|..+...+.|
T Consensus 1467 ~~y~i~~ll~m~G~a~~--~~k~vi~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1467 EDYPIAELLQMVGLASG--AGKCVIMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred ccCchhHHHHHhhhhcC--CccEEEEecCchHHHHHHhccCcCc
Confidence 23356699999999999 78888887643 45666666665
No 141
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.07 E-value=3.5e-09 Score=122.72 Aligned_cols=363 Identities=17% Similarity=0.171 Sum_probs=194.1
Q ss_pred CchHHHHHHHHHH----HcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 001615 282 PAFKMKAEFLKAV----AENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (1044)
Q Consensus 282 pi~~~Q~~~i~~i----~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~ 357 (1044)
.+.+||-+.+..+ .++-+.|+.-+-|-|||.|..-++...... ++..+.-+|++|.-.|..-+ .+++++.. .
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~--~~~~GPfLVi~P~StL~NW~-~Ef~rf~P-~ 242 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGR--KGIPGPFLVIAPKSTLDNWM-NEFKRFTP-S 242 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHh--cCCCCCeEEEeeHhhHHHHH-HHHHHhCC-C
Confidence 4557887766654 467789999999999998866554433221 23344577888988876544 45555432 2
Q ss_pred CCcEEEEEE-e-------ccccCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccchhHHHH-HHHHHHccc
Q 001615 358 LGETVGYQI-R-------LESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLL-IILRDLLPR 427 (1044)
Q Consensus 358 ~g~~vgy~i-r-------~~~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~~d~ll-~~lk~~~~~ 427 (1044)
+ ..+-|.- . .+-......+|+++|.++.++.- +. .--..++||||||| |--+....+ .+++.+..
T Consensus 243 l-~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk--~~lk~~~W~ylvIDEaH-RiKN~~s~L~~~lr~f~~- 317 (971)
T KOG0385|consen 243 L-NVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK--SFLKKFNWRYLVIDEAH-RIKNEKSKLSKILREFKT- 317 (971)
T ss_pred c-ceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH--HHHhcCCceEEEechhh-hhcchhhHHHHHHHHhcc-
Confidence 2 2223321 1 11112236899999999988741 11 11246899999999 755554433 33444322
Q ss_pred CCcccEEEcccCC---------------------ChHHHHhhhCCCCeec---CCCCccccceeeh-HHHHHhhh--ccc
Q 001615 428 RPDLRLILMSATI---------------------NADLFSKYFGNAPTVH---IPGLTFPVTDLFL-EDVLEKTR--YKM 480 (1044)
Q Consensus 428 ~~~~qiilmSATl---------------------~~~~~~~~f~~~~~i~---v~g~~~pv~~~~l-~~~~~~~~--~~~ 480 (1044)
..-++++.|. +.+.|.+||....... +-.+.+.|-.-|+ ..+-.... ...
T Consensus 318 ---~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLpp 394 (971)
T KOG0385|consen 318 ---DNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPP 394 (971)
T ss_pred ---cceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCC
Confidence 2345667775 1245677776421100 0001111111111 10000000 000
Q ss_pred Cccccccccccccccccccchhhhhhhhh-cccccc--------cccchhhhhHHHHHh------------------hhh
Q 001615 481 NSKLDSFQGNSRRSRRQDSKKDHLTALFE-DVDIDS--------NYKNYRASTRASLEA------------------WSA 533 (1044)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~------------------~~~ 533 (1044)
..+..-+.+-+. -+......++. +.+.-. ...|+.-..+.+... ...
T Consensus 395 KkE~~iyvgms~------mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~ 468 (971)
T KOG0385|consen 395 KKELIIYVGMSS------MQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVT 468 (971)
T ss_pred cceeeEeccchH------HHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHh
Confidence 011111100000 00000000000 000000 000000000000000 000
Q ss_pred hhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCC---
Q 001615 534 EQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPN--- 610 (1044)
Q Consensus 534 ~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g--- 610 (1044)
..=.+-++..++..+. +.+.+||||-.-..-.+-|.++..- .+|...-+-|+++.++|...++.|...
T Consensus 469 nSGKm~vLDkLL~~Lk--~~GhRVLIFSQmt~mLDILeDyc~~-------R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~ 539 (971)
T KOG0385|consen 469 NSGKMLVLDKLLPKLK--EQGHRVLIFSQMTRMLDILEDYCML-------RGYEYCRLDGSTSHEEREDAIEAFNAPPSE 539 (971)
T ss_pred cCcceehHHHHHHHHH--hCCCeEEEeHHHHHHHHHHHHHHHh-------cCceeEeecCCCCcHHHHHHHHhcCCCCcc
Confidence 0001223445555554 4577999997655555555444432 567788899999999999999888654
Q ss_pred CcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCCCCcEEEEecChhh
Q 001615 611 KRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRII 686 (1044)
Q Consensus 611 ~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~~G~c~~L~t~~~ 686 (1044)
+.-.+++|-...-||++-..+.||-|+ ..+||...+ ++.+|+-|.|-..+=+.|||.|+..
T Consensus 540 ~FiFlLSTRAGGLGINL~aADtVIlyD----SDWNPQ~DL-----------QAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 540 KFIFLLSTRAGGLGINLTAADTVILYD----SDWNPQVDL-----------QAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred eEEEEEeccccccccccccccEEEEec----CCCCchhhh-----------HHHHHHHhhCCcCceEEEEEeccch
Confidence 345789999999999999999999754 335554433 7889999999999999999999764
No 142
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.07 E-value=1.4e-08 Score=129.40 Aligned_cols=164 Identities=18% Similarity=0.181 Sum_probs=98.7
Q ss_pred HHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecc
Q 001615 541 VESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNI 620 (1044)
Q Consensus 541 i~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTni 620 (1044)
+...|..++. ..+|++|||+++.+..+.+++.|...... .++.++. . ++....|.++++.|+.+...||++|..
T Consensus 740 la~~i~~l~~-~~~g~~LVLFtSy~~l~~v~~~l~~~~~~---~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~iLlG~~s 813 (928)
T PRK08074 740 VAAYIAKIAK-ATKGRMLVLFTSYEMLKKTYYNLKNEEEL---EGYVLLA-Q-GVSSGSRARLTKQFQQFDKAILLGTSS 813 (928)
T ss_pred HHHHHHHHHH-hCCCCEEEEECCHHHHHHHHHHHhhcccc---cCceEEe-c-CCCCCCHHHHHHHHHhcCCeEEEecCc
Confidence 4444555543 34689999999999999999999753210 1233332 2 233334677888888888899999999
Q ss_pred cccccCCCC--eEEEEeCCCCcceeccccc----------ccccccc--ccccHhhHHHhcccCCCC--CCcEEEEecCh
Q 001615 621 AESSITIDD--VVYVVDCGKAKETSYDALN----------KLACLLP--SWISKASAHQRRGRAGRV--QPGVCYKLYPR 684 (1044)
Q Consensus 621 ae~GidIp~--V~~VId~g~~k~~~yd~~~----------~~~~l~~--~~iS~a~~~QR~GRAGR~--~~G~c~~L~t~ 684 (1044)
..+|||+|+ +..||-.++|-..--||.. +-+.... .|-..-...|-+||.=|. ..|..+.|=++
T Consensus 814 FwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 814 FWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred ccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 999999996 5889888888542222221 1111111 122344678999999888 34765544222
Q ss_pred ---hhHhhcCCCCCCc--cccCChHHHHHHH
Q 001615 685 ---IIHDAMLPYQLPE--ILRTPLQELCLHI 710 (1044)
Q Consensus 685 ---~~~~~l~~~~~pe--i~r~~L~~~~L~~ 710 (1044)
..|-.......|. +.+.++.++.-.+
T Consensus 894 ~~~k~Yg~~~l~sLP~~~~~~~~~~~~~~~~ 924 (928)
T PRK08074 894 LTTTSYGKYFLESLPTVPVYEGTLEELLEEV 924 (928)
T ss_pred cccchHHHHHHHhCCCCCcccCCHHHHHHHH
Confidence 2342211222332 3345666665444
No 143
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.03 E-value=5.6e-08 Score=116.93 Aligned_cols=115 Identities=22% Similarity=0.222 Sum_probs=78.5
Q ss_pred HHHHHHHHHhc-cCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCC-cEEEEee
Q 001615 541 VESTIEYICRH-EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNK-RKIVLAT 618 (1044)
Q Consensus 541 i~~~l~~i~~~-~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~-~kIlvaT 618 (1044)
..+++..+... ..+.+|||.+.+.+..+.+.+.|.... +..-.|++.-...|-..|- ..|. -.|.|||
T Consensus 412 ~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~g-------i~h~vLNAk~~e~EA~IIa---~AG~~GaVTIAT 481 (925)
T PRK12903 412 WKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEAN-------IPHTVLNAKQNAREAEIIA---KAGQKGAITIAT 481 (925)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC-------CCceeecccchhhHHHHHH---hCCCCCeEEEec
Confidence 33444444432 456799999999999999999998743 3333455543233333332 3343 3699999
Q ss_pred cccccccCCCCeE--------EEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC-CCcEEEEecC
Q 001615 619 NIAESSITIDDVV--------YVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYP 683 (1044)
Q Consensus 619 niae~GidIp~V~--------~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t 683 (1044)
|+|.||.||.=-. |||-+..+. |+--=.|-+|||||. .||.+-.+.+
T Consensus 482 NMAGRGTDI~Lg~~V~~~GGLhVIgTerhe------------------SrRIDnQLrGRaGRQGDpGss~f~lS 537 (925)
T PRK12903 482 NMAGRGTDIKLSKEVLELGGLYVLGTDKAE------------------SRRIDNQLRGRSGRQGDVGESRFFIS 537 (925)
T ss_pred ccccCCcCccCchhHHHcCCcEEEecccCc------------------hHHHHHHHhcccccCCCCCcceEEEe
Confidence 9999999996322 889888776 333556999999999 7897655544
No 144
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.97 E-value=3.3e-08 Score=119.60 Aligned_cols=126 Identities=16% Similarity=0.084 Sum_probs=84.4
Q ss_pred hcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 001615 278 REKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (1044)
Q Consensus 278 r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~ 357 (1044)
++.+-++++-.+++-.+.-++--|+...||.|||+.+.++++-.++. +..|-|+.+...||..-++.+...+ ..
T Consensus 70 ~R~lG~r~ydvQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~-----G~~VhVvT~NdyLA~RD~e~m~pvy-~~ 143 (870)
T CHL00122 70 FRTLGLRHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALT-----GKGVHIVTVNDYLAKRDQEWMGQIY-RF 143 (870)
T ss_pred HHHhCCCCCchHhhhhHhhcCCccccccCCCCchHHHHHHHHHHHhc-----CCceEEEeCCHHHHHHHHHHHHHHH-HH
Confidence 34444444555577776666677899999999999888888655543 3356777799999998887765542 34
Q ss_pred CCcEEEEEEeccc----cCCCCccEEEEchH-----HHHHHHhcCC---CCCccceEEechhhh
Q 001615 358 LGETVGYQIRLES----KRSAQTRLLFCTTG-----VLLRQLVEDP---DLSCVSHLLVDEIHE 409 (1044)
Q Consensus 358 ~g~~vgy~ir~~~----~~~~~~~I~v~T~g-----~Ll~~l~~~~---~L~~~~~lIiDEaHe 409 (1044)
+|.+||.-..... +..=.++|+|+|.. .|.+.|...+ ....+.+.||||||.
T Consensus 144 LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDS 207 (870)
T CHL00122 144 LGLTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDS 207 (870)
T ss_pred cCCceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchh
Confidence 5666775432211 11226799999984 4555543322 456789999999994
No 145
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.93 E-value=4.7e-08 Score=116.87 Aligned_cols=320 Identities=18% Similarity=0.179 Sum_probs=171.8
Q ss_pred HcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCC-
Q 001615 295 AENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRS- 373 (1044)
Q Consensus 295 ~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~- 373 (1044)
....+.+|-+|.||||||++..++-+.+- .+..+|+++.-||.|+.+++.++....- ...+-|....+....
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~----~~~~~VLvVShRrSL~~sL~~rf~~~~l---~gFv~Y~d~~~~~i~~ 119 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALK----NPDKSVLVVSHRRSLTKSLAERFKKAGL---SGFVNYLDSDDYIIDG 119 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhcc----CCCCeEEEEEhHHHHHHHHHHHHhhcCC---Ccceeeeccccccccc
Confidence 35678999999999999999887766531 2356899999999999999999865421 122333322111111
Q ss_pred CCccEEEEchHHHHHHHhcCCCCCccceEEechhhh--ccchh------HHHHHHHHHHcccCCcccEEEcccCCChHH-
Q 001615 374 AQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHE--RGMNE------DFLLIILRDLLPRRPDLRLILMSATINADL- 444 (1044)
Q Consensus 374 ~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHe--R~~~~------d~ll~~lk~~~~~~~~~qiilmSATl~~~~- 444 (1044)
...+-++++-..|.+.. .+.+.++++|||||+-. +.+.+ .-...+++.+++. .-++|+|-||++...
T Consensus 120 ~~~~rLivqIdSL~R~~--~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~--ak~VI~~DA~ln~~tv 195 (824)
T PF02399_consen 120 RPYDRLIVQIDSLHRLD--GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRN--AKTVIVMDADLNDQTV 195 (824)
T ss_pred cccCeEEEEehhhhhcc--cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHh--CCeEEEecCCCCHHHH
Confidence 12345556666676653 34688899999999973 11222 1223344444443 348999999998874
Q ss_pred -HHhhhCCCCeecC-C----CCccccce-eehH----HHH-HhhhcccCccccccccccccccccccchhhhhhhhhccc
Q 001615 445 -FSKYFGNAPTVHI-P----GLTFPVTD-LFLE----DVL-EKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVD 512 (1044)
Q Consensus 445 -~~~~f~~~~~i~v-~----g~~~pv~~-~~l~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1044)
|-+.+.+..-+++ . +..|.-.. .++. +.+ .... . . +......... ........ ..
T Consensus 196 dFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~--~--~-~~~~~~~~~~-~~~~~~~~-~~------ 262 (824)
T PF02399_consen 196 DFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALN--P--E-DENADTSPTP-KHSPDPTA-TA------ 262 (824)
T ss_pred HHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhC--C--c-ccccccCCCc-CCCCcccc-cc------
Confidence 3344543222221 1 11111111 1111 000 0000 0 0 0000000000 00000000 00
Q ss_pred ccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEec
Q 001615 513 IDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLH 592 (1044)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH 592 (1044)
.++ .+ .......+...+ ..+.+|-||+.|..-.+.+++.... ....|+.++
T Consensus 263 ------~~~-----------~~--~~tF~~~L~~~L---~~gknIcvfsSt~~~~~~v~~~~~~-------~~~~Vl~l~ 313 (824)
T PF02399_consen 263 ------AIS-----------ND--ETTFFSELLARL---NAGKNICVFSSTVSFAEIVARFCAR-------FTKKVLVLN 313 (824)
T ss_pred ------ccc-----------cc--hhhHHHHHHHHH---hCCCcEEEEeChHHHHHHHHHHHHh-------cCCeEEEEc
Confidence 000 00 000122233333 2356788899998888888887765 345677788
Q ss_pred CCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCC
Q 001615 593 GSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGR 672 (1044)
Q Consensus 593 ~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR 672 (1044)
|.-+.. .+. . =++.+|++=|.+..-|+++.+..+=--|.+.+...+-| +..+..|+.||.-.
T Consensus 314 s~~~~~---dv~-~--W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gp------------d~~s~~Q~lgRvR~ 375 (824)
T PF02399_consen 314 STDKLE---DVE-S--WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGP------------DMVSVYQMLGRVRS 375 (824)
T ss_pred CCCCcc---ccc-c--ccceeEEEEeceEEEEeccchhhceEEEEEecCCCCCC------------cHHHHHHHHHHHHh
Confidence 766554 232 2 25689999999999999997654332333333222211 22368999999966
Q ss_pred CCCcEEEEecChh
Q 001615 673 VQPGVCYKLYPRI 685 (1044)
Q Consensus 673 ~~~G~c~~L~t~~ 685 (1044)
......|.-+...
T Consensus 376 l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 376 LLDNEIYVYIDAS 388 (824)
T ss_pred hccCeEEEEEecc
Confidence 6666666655543
No 146
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.79 E-value=2.7e-07 Score=112.55 Aligned_cols=124 Identities=17% Similarity=0.246 Sum_probs=95.2
Q ss_pred HHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCC---CCcEEEEe
Q 001615 541 VESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPP---NKRKIVLA 617 (1044)
Q Consensus 541 i~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~---g~~kIlva 617 (1044)
+..+|..+. ..+.+||||-.-.+-.+-|+++|.. .+|..--|-|++..+.|+.+++.|.. ...-.|+|
T Consensus 688 LDKLL~rLk--~~GHrVLIFSQMVRmLDIL~eYL~~-------r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLS 758 (1373)
T KOG0384|consen 688 LDKLLPRLK--EGGHRVLIFSQMVRMLDILAEYLSL-------RGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLS 758 (1373)
T ss_pred HHHHHHHHh--cCCceEEEhHHHHHHHHHHHHHHHH-------cCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEe
Confidence 334444432 4567999999988888999999986 45556669999999999999988864 45689999
Q ss_pred ecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCCCCcEEEEecChhhHh
Q 001615 618 TNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRIIHD 688 (1044)
Q Consensus 618 Tniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~~G~c~~L~t~~~~~ 688 (1044)
|-...-|||+-..+.||.|| ..+||.+.+ ++.-|+-|.|-...=..|||.|+..++
T Consensus 759 TRAGGLGINLatADTVIIFD----SDWNPQNDL-----------QAqARaHRIGQkk~VnVYRLVTk~TvE 814 (1373)
T KOG0384|consen 759 TRAGGLGINLATADTVIIFD----SDWNPQNDL-----------QAQARAHRIGQKKHVNVYRLVTKNTVE 814 (1373)
T ss_pred cccCcccccccccceEEEeC----CCCCcchHH-----------HHHHHHHhhcccceEEEEEEecCCchH
Confidence 99999999999999888765 446666544 455566666666667899999998765
No 147
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.74 E-value=5.7e-07 Score=108.89 Aligned_cols=125 Identities=16% Similarity=0.123 Sum_probs=85.1
Q ss_pred cCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC
Q 001615 279 EKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENL 358 (1044)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~ 358 (1044)
+.|-+.+|-.+++-.+.=++--|....||-|||+.+.++++-.++. +..|-|+.+..-||..=++.+...+. .+
T Consensus 80 R~lG~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~-----GkgVhVVTvNdYLA~RDae~m~~vy~-~L 153 (939)
T PRK12902 80 RVLGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALT-----GKGVHVVTVNDYLARRDAEWMGQVHR-FL 153 (939)
T ss_pred HHhCCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhc-----CCCeEEEeCCHHHHHhHHHHHHHHHH-Hh
Confidence 3444444555577666545556899999999999998888877664 33566777889999887776655432 45
Q ss_pred CcEEEEEEec----cccCCCCccEEEEchHHH-----HHHHhcCC---CCCccceEEechhhh
Q 001615 359 GETVGYQIRL----ESKRSAQTRLLFCTTGVL-----LRQLVEDP---DLSCVSHLLVDEIHE 409 (1044)
Q Consensus 359 g~~vgy~ir~----~~~~~~~~~I~v~T~g~L-----l~~l~~~~---~L~~~~~lIiDEaHe 409 (1044)
|.+||.-... +.+..=.++|+|+|+.-| .+.|..+. ....+.+.||||||.
T Consensus 154 GLtvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDS 216 (939)
T PRK12902 154 GLSVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDS 216 (939)
T ss_pred CCeEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccc
Confidence 6677754321 111223789999999765 55554433 467889999999994
No 148
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.74 E-value=1.7e-06 Score=104.25 Aligned_cols=159 Identities=19% Similarity=0.127 Sum_probs=96.9
Q ss_pred chHHHHHHHHHHHcC---C-------eEEEEecCCCchhchHHHHHHHHHHhccCCCC-----cEEEEEcccHHHHHHHH
Q 001615 283 AFKMKAEFLKAVAEN---Q-------VLVVSGETGCGKTTQLPQFILEEELSSLRGAD-----CNIICTQPRRISAISVA 347 (1044)
Q Consensus 283 i~~~Q~~~i~~i~~~---~-------~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~-----~~ilv~~P~r~la~qva 347 (1044)
++|+|.+.+.-+-++ . -.|+.=+.|+|||.|..-+|-..+ .+ .+. .+.||++|. -|....+
T Consensus 239 LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlL-rq--~P~~~~~~~k~lVV~P~-sLv~nWk 314 (776)
T KOG0390|consen 239 LRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLL-RQ--FPQAKPLINKPLVVAPS-SLVNNWK 314 (776)
T ss_pred cCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHH-Hh--CcCccccccccEEEccH-HHHHHHH
Confidence 357999999887542 2 246667899999988776655443 32 223 577888895 4566777
Q ss_pred HHHHHHhCC-CCCcEEEEEEecc-----------ccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhH
Q 001615 348 ARVSSERGE-NLGETVGYQIRLE-----------SKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNED 415 (1044)
Q Consensus 348 ~rv~~~~~~-~~g~~vgy~ir~~-----------~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d 415 (1044)
+++.+..+. .+....-|+..-+ ....-.+-|++-+.+.+.+.+. .-.+..+++||+||.| |--+++
T Consensus 315 kEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~-~il~~~~glLVcDEGH-rlkN~~ 392 (776)
T KOG0390|consen 315 KEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR-KILLIRPGLLVCDEGH-RLKNSD 392 (776)
T ss_pred HHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH-HHhcCCCCeEEECCCC-Cccchh
Confidence 777776664 3333222322111 0111133466666777654442 2256788999999999 655555
Q ss_pred HHHHHHHHHcccCCcccEEEcccCCChHHHHhhhC
Q 001615 416 FLLIILRDLLPRRPDLRLILMSATINADLFSKYFG 450 (1044)
Q Consensus 416 ~ll~~lk~~~~~~~~~qiilmSATl~~~~~~~~f~ 450 (1044)
... ++.+... .-.+-|++|.|+=.+.|.+||.
T Consensus 393 s~~--~kaL~~l-~t~rRVLLSGTp~QNdl~EyFn 424 (776)
T KOG0390|consen 393 SLT--LKALSSL-KTPRRVLLTGTPIQNDLKEYFN 424 (776)
T ss_pred hHH--HHHHHhc-CCCceEEeeCCcccccHHHHHH
Confidence 432 2222222 2346678899998888888885
No 149
>COG4889 Predicted helicase [General function prediction only]
Probab=98.71 E-value=3.1e-08 Score=115.84 Aligned_cols=77 Identities=19% Similarity=0.262 Sum_probs=60.5
Q ss_pred CeEEEEecCCCChHHHHhhh---CCCCCCCcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHh
Q 001615 585 KFLVLPLHGSMPTINQREIF---DRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKA 661 (1044)
Q Consensus 585 ~~~i~~lH~~l~~~er~~v~---~~f~~g~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a 661 (1044)
.+.+-...|.|...+|...+ ..|.+..+|||----.+..|||+|..+-||-++.-+ |.-
T Consensus 499 ~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~------------------smV 560 (1518)
T COG4889 499 KISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRS------------------SMV 560 (1518)
T ss_pred eEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCch------------------hHH
Confidence 34444455888888885544 357889999999899999999999999999866555 444
Q ss_pred hHHHhcccCCCCCCcEEE
Q 001615 662 SAHQRRGRAGRVQPGVCY 679 (1044)
Q Consensus 662 ~~~QR~GRAGR~~~G~c~ 679 (1044)
+.+|-.||.-|..+|+-|
T Consensus 561 DIVQaVGRVMRKa~gK~y 578 (1518)
T COG4889 561 DIVQAVGRVMRKAKGKKY 578 (1518)
T ss_pred HHHHHHHHHHHhCcCCcc
Confidence 899999999999877643
No 150
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.69 E-value=1.4e-06 Score=107.97 Aligned_cols=129 Identities=10% Similarity=0.141 Sum_probs=83.0
Q ss_pred HHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCC----CCCCcEEEE
Q 001615 541 VESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRP----PPNKRKIVL 616 (1044)
Q Consensus 541 i~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f----~~g~~kIlv 616 (1044)
+...+..++. .+|.+|||+++.+..+.+++.|... .+..++ .++.. .+..+++.| ..+...||+
T Consensus 523 ~~~~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~------~~~~ll-~Q~~~---~~~~ll~~f~~~~~~~~~~VL~ 590 (697)
T PRK11747 523 MAEFLPELLE--KHKGSLVLFASRRQMQKVADLLPRD------LRLMLL-VQGDQ---PRQRLLEKHKKRVDEGEGSVLF 590 (697)
T ss_pred HHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHh------cCCcEE-EeCCc---hHHHHHHHHHHHhccCCCeEEE
Confidence 4555556665 3455899999999999999998742 122333 35543 344555444 456788999
Q ss_pred eecccccccCCCC--eEEEEeCCCCcceecccccc----------cccccc--ccccHhhHHHhcccCCCC--CCcEEEE
Q 001615 617 ATNIAESSITIDD--VVYVVDCGKAKETSYDALNK----------LACLLP--SWISKASAHQRRGRAGRV--QPGVCYK 680 (1044)
Q Consensus 617 aTniae~GidIp~--V~~VId~g~~k~~~yd~~~~----------~~~l~~--~~iS~a~~~QR~GRAGR~--~~G~c~~ 680 (1044)
+|....+|||+|+ ++.||-.++|-..--||... -+.... .|-..-...|-+||.=|. -.|..+.
T Consensus 591 g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~i 670 (697)
T PRK11747 591 GLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTI 670 (697)
T ss_pred EeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEE
Confidence 9999999999986 79999999886433233211 111110 111223578999999888 3476554
Q ss_pred e
Q 001615 681 L 681 (1044)
Q Consensus 681 L 681 (1044)
|
T Consensus 671 l 671 (697)
T PRK11747 671 L 671 (697)
T ss_pred E
Confidence 4
No 151
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.67 E-value=3.6e-07 Score=113.98 Aligned_cols=132 Identities=14% Similarity=0.153 Sum_probs=81.6
Q ss_pred HHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCC-CCeEEEEecCCCChHHHHhhhCCCCC----CCcEEE
Q 001615 541 VESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDP-NKFLVLPLHGSMPTINQREIFDRPPP----NKRKIV 615 (1044)
Q Consensus 541 i~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~-~~~~i~~lH~~l~~~er~~v~~~f~~----g~~kIl 615 (1044)
+...|..+++. .+|.+|||+|+....+.+++.+......... ....++.=..+ ..++..+++.|+. |.-.|+
T Consensus 510 l~~~i~~~~~~-~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~--~~~~~~~l~~f~~~~~~~~gavL 586 (705)
T TIGR00604 510 LGELLVEFSKI-IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKD--AQETSDALERYKQAVSEGRGAVL 586 (705)
T ss_pred HHHHHHHHhhc-CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCC--cchHHHHHHHHHHHHhcCCceEE
Confidence 45556566643 3588999999999999999888753211100 01122211111 1456777877743 455699
Q ss_pred Eee--cccccccCCCC--eEEEEeCCCCcceecccccccc--cc-------cc-cc---ccHhhHHHhcccCCCCCC
Q 001615 616 LAT--NIAESSITIDD--VVYVVDCGKAKETSYDALNKLA--CL-------LP-SW---ISKASAHQRRGRAGRVQP 675 (1044)
Q Consensus 616 vaT--niae~GidIp~--V~~VId~g~~k~~~yd~~~~~~--~l-------~~-~~---iS~a~~~QR~GRAGR~~~ 675 (1044)
+|+ .....|||++| .+.||-.|+|-....|+..... .+ .. .| -.--...|-+||+=|...
T Consensus 587 ~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~ 663 (705)
T TIGR00604 587 LSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKD 663 (705)
T ss_pred EEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcC
Confidence 999 89999999997 6899999999744333322110 00 00 11 112356788999999954
No 152
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.60 E-value=1.5e-06 Score=102.12 Aligned_cols=113 Identities=16% Similarity=0.260 Sum_probs=93.0
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCc--EEEEeecccccccCCCCe
Q 001615 553 GDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKR--KIVLATNIAESSITIDDV 630 (1044)
Q Consensus 553 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~--kIlvaTniae~GidIp~V 630 (1044)
.+.++|+|..++..++.+...|.. ..++..+-+.|..+...|..+.+.|..+.. -.|++|-+..-|+|+-+.
T Consensus 545 qg~rvllFsqs~~mLdilE~fL~~------~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgA 618 (923)
T KOG0387|consen 545 QGDRVLLFSQSRQMLDILESFLRR------AKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGA 618 (923)
T ss_pred CCCEEEEehhHHHHHHHHHHHHHh------cCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccC
Confidence 455999999999999998888874 267889999999999999999999987654 467899999999999999
Q ss_pred EEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCCCCcEEEEecChhh
Q 001615 631 VYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRII 686 (1044)
Q Consensus 631 ~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~~G~c~~L~t~~~ 686 (1044)
+-||-||.- +||++.+ ++.-|+=|-|-.+.=..|||.+...
T Consensus 619 nRVIIfDPd----WNPStD~-----------QAreRawRiGQkkdV~VYRL~t~gT 659 (923)
T KOG0387|consen 619 NRVIIFDPD----WNPSTDN-----------QARERAWRIGQKKDVVVYRLMTAGT 659 (923)
T ss_pred ceEEEECCC----CCCccch-----------HHHHHHHhhcCccceEEEEEecCCc
Confidence 999987644 4555443 6778888888888888999998643
No 153
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.58 E-value=4.5e-07 Score=108.89 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=51.7
Q ss_pred HHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHH
Q 001615 288 AEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSS 352 (1044)
Q Consensus 288 ~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~ 352 (1044)
+.+.+++.+++.+++.|+||+|||.+++++++..+... .+.+|||+.||++|+.|+.+.+..
T Consensus 7 ~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~---~~~rvlIstpT~~Lq~Ql~~~l~~ 68 (636)
T TIGR03117 7 LNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER---PDQKIAIAVPTLALMGQLWSELER 68 (636)
T ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc---cCceEEEECCcHHHHHHHHHHHHH
Confidence 45677778899999999999999999999999876421 246899999999999999975543
No 154
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.54 E-value=4.9e-06 Score=103.72 Aligned_cols=131 Identities=15% Similarity=0.132 Sum_probs=86.0
Q ss_pred HHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCc-EEEEeec
Q 001615 541 VESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKR-KIVLATN 619 (1044)
Q Consensus 541 i~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~-kIlvaTn 619 (1044)
+...+..+.. ..+|++|||+|+.+..+.+++.+..... ...+..++..+..+ +++.|..+.- .++|+|.
T Consensus 467 ~~~~i~~~~~-~~~~~~lvlF~Sy~~l~~~~~~~~~~~~------~~~v~~q~~~~~~~---~l~~f~~~~~~~~lv~~g 536 (654)
T COG1199 467 LAAYLREILK-ASPGGVLVLFPSYEYLKRVAERLKDERS------TLPVLTQGEDEREE---LLEKFKASGEGLILVGGG 536 (654)
T ss_pred HHHHHHHHHh-hcCCCEEEEeccHHHHHHHHHHHhhcCc------cceeeecCCCcHHH---HHHHHHHhcCCeEEEeec
Confidence 4445555554 3456899999999999999999986321 13445667666554 4444544433 8999999
Q ss_pred ccccccCCCCe--EEEEeCCCCcceecccc----------cccc--ccccccccHhhHHHhcccCCCC--CCcEEEEe
Q 001615 620 IAESSITIDDV--VYVVDCGKAKETSYDAL----------NKLA--CLLPSWISKASAHQRRGRAGRV--QPGVCYKL 681 (1044)
Q Consensus 620 iae~GidIp~V--~~VId~g~~k~~~yd~~----------~~~~--~l~~~~iS~a~~~QR~GRAGR~--~~G~c~~L 681 (1044)
.+.+|||+|+= ..||-.++|--..-|+. .+.. .....+..--...|-+||.=|. ..|.++.|
T Consensus 537 sf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 537 SFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred cccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 99999999864 77888888865333332 1111 1122333445788999999998 34777655
No 155
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.48 E-value=2e-06 Score=104.67 Aligned_cols=126 Identities=11% Similarity=0.070 Sum_probs=83.2
Q ss_pred cCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhC-CCCCcEEEEEEec---------cccCCC
Q 001615 305 ETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERG-ENLGETVGYQIRL---------ESKRSA 374 (1044)
Q Consensus 305 ~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~-~~~g~~vgy~ir~---------~~~~~~ 374 (1044)
-+|||||..+...+-+.+.. +..+|++.|...|+.|+.+++.+.++ .. .+.|.-.. ......
T Consensus 168 ~~GSGKTevyl~~i~~~l~~-----Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~---v~~lhS~l~~~~R~~~w~~~~~G 239 (665)
T PRK14873 168 LPGEDWARRLAAAAAATLRA-----GRGALVVVPDQRDVDRLEAALRALLGAGD---VAVLSAGLGPADRYRRWLAVLRG 239 (665)
T ss_pred CCCCcHHHHHHHHHHHHHHc-----CCeEEEEecchhhHHHHHHHHHHHcCCCc---EEEECCCCCHHHHHHHHHHHhCC
Confidence 36999998888877665532 34799999999999999999998886 32 23333211 112234
Q ss_pred CccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhH------HH-HHHHHHHcccCCcccEEEcccCCChHHHHh
Q 001615 375 QTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNED------FL-LIILRDLLPRRPDLRLILMSATINADLFSK 447 (1044)
Q Consensus 375 ~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d------~l-l~~lk~~~~~~~~~qiilmSATl~~~~~~~ 447 (1044)
..+|+|.|-.-+.- -+.++++|||||=|+-+...+ -- ..+++ ....+..+|+.|||...+.+..
T Consensus 240 ~~~IViGtRSAvFa------P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~R---a~~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 240 QARVVVGTRSAVFA------PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLR---AHQHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred CCcEEEEcceeEEe------ccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHH---HHHcCCcEEEECCCCCHHHHHH
Confidence 57899998643321 468999999999996322221 11 11111 1234689999999998887653
No 156
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.45 E-value=3.2e-05 Score=88.69 Aligned_cols=122 Identities=12% Similarity=0.153 Sum_probs=90.8
Q ss_pred HHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccc-
Q 001615 544 TIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAE- 622 (1044)
Q Consensus 544 ~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae- 622 (1044)
++-.+.+....+.+|||+|+.-+-..+.+.|+. ..+....+|--.+..+-.++-..|..|+.+||+-|-=+-
T Consensus 290 iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~-------~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HF 362 (442)
T PF06862_consen 290 ILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKK-------ENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHF 362 (442)
T ss_pred HHHHhhhccCCCcEEEEecchhhhHHHHHHHHh-------cCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhh
Confidence 333343245668899999999999999999985 466677788878888878888889999999999995332
Q ss_pred -cccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCC--C--CCcEEEEecChhhH
Q 001615 623 -SSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGR--V--QPGVCYKLYPRIIH 687 (1044)
Q Consensus 623 -~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR--~--~~G~c~~L~t~~~~ 687 (1044)
+=..|.+|..||-|++|....|-+ +.+...+.... . ....|..||++-+.
T Consensus 363 frRy~irGi~~viFY~~P~~p~fY~---------------El~n~~~~~~~~~~~~~~~~~~~lysk~D~ 417 (442)
T PF06862_consen 363 FRRYRIRGIRHVIFYGPPENPQFYS---------------ELLNMLDESSGGEVDAADATVTVLYSKYDA 417 (442)
T ss_pred hhhceecCCcEEEEECCCCChhHHH---------------HHHhhhcccccccccccCceEEEEecHhHH
Confidence 346789999999999999877533 33333332221 2 56899999998544
No 157
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.41 E-value=7.4e-06 Score=100.44 Aligned_cols=114 Identities=24% Similarity=0.276 Sum_probs=78.7
Q ss_pred HHHHHHHhc-cCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeeccc
Q 001615 543 STIEYICRH-EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIA 621 (1044)
Q Consensus 543 ~~l~~i~~~-~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTnia 621 (1044)
+++..+... ..+.+|||-+.+.+.-+.+.++|...... .-.|++.....|-+.|-+.-..| .|-||||+|
T Consensus 616 Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~-------H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMA 686 (1112)
T PRK12901 616 AVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIP-------HNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMA 686 (1112)
T ss_pred HHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCc-------HHHhhccchhhHHHHHHhcCCCC--cEEEeccCc
Confidence 344444332 35679999999999999999999874332 22244443344444444433333 589999999
Q ss_pred ccccCCC--------CeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC-CCcEEEEecC
Q 001615 622 ESSITID--------DVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYP 683 (1044)
Q Consensus 622 e~GidIp--------~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~t 683 (1044)
.||-||. +=-|||-+..+. |+---.|-+|||||. .||.+-.+.+
T Consensus 687 GRGTDIkLg~~V~e~GGL~VIgTerhe------------------SrRID~QLrGRaGRQGDPGsS~f~lS 739 (1112)
T PRK12901 687 GRGTDIKLSPEVKAAGGLAIIGTERHE------------------SRRVDRQLRGRAGRQGDPGSSQFYVS 739 (1112)
T ss_pred CCCcCcccchhhHHcCCCEEEEccCCC------------------cHHHHHHHhcccccCCCCCcceEEEE
Confidence 9999997 335777777666 555778999999999 7898655544
No 158
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.29 E-value=5.6e-06 Score=92.67 Aligned_cols=134 Identities=16% Similarity=0.096 Sum_probs=74.7
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCC-CCCcEEEEEEec-----c
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGE-NLGETVGYQIRL-----E 369 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~-~~g~~vgy~ir~-----~ 369 (1044)
..+..+++-++|+|||.++..++..............+||++|. .+..+....+.+.... .. ..+-|.-.. .
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~-~v~~~~~~~~~~~~~ 101 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSL-RVIIYDGDSERRRLS 101 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS--EEEESSSCHHHHTT
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhccccccccc-ccccccccccccccc
Confidence 45678999999999997777666532221111112258888899 6667888888777633 22 222222111 1
Q ss_pred ccCCCCccEEEEchHHHH--------HHHhcCCCCCccceEEechhhhc-cchhHHHHHHHHHHcccCCcccEEEcccCC
Q 001615 370 SKRSAQTRLLFCTTGVLL--------RQLVEDPDLSCVSHLLVDEIHER-GMNEDFLLIILRDLLPRRPDLRLILMSATI 440 (1044)
Q Consensus 370 ~~~~~~~~I~v~T~g~Ll--------~~l~~~~~L~~~~~lIiDEaHeR-~~~~d~ll~~lk~~~~~~~~~qiilmSATl 440 (1044)
.......+++++|...+. ..+. . -+.++|||||+|.- +..+..... +.. .. ....++||||+
T Consensus 102 ~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~---~-~~~~~vIvDEaH~~k~~~s~~~~~-l~~---l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETLRKARKKKDKEDLK---Q-IKWDRVIVDEAHRLKNKDSKRYKA-LRK---LR-ARYRWLLSGTP 172 (299)
T ss_dssp SSSCCCSSEEEEEHHHHH--TSTHTTHHHH---T-SEEEEEEETTGGGGTTTTSHHHHH-HHC---CC-ECEEEEE-SS-
T ss_pred ccccccceeeeccccccccccccccccccc---c-ccceeEEEeccccccccccccccc-ccc---cc-cceEEeecccc
Confidence 223356789999999998 2222 1 35899999999953 233332222 222 22 45778899997
No 159
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.23 E-value=0.00011 Score=90.12 Aligned_cols=115 Identities=19% Similarity=0.268 Sum_probs=87.2
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCC-CcE-EEEeecccccccCCCCeE
Q 001615 554 DGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPN-KRK-IVLATNIAESSITIDDVV 631 (1044)
Q Consensus 554 ~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g-~~k-IlvaTniae~GidIp~V~ 631 (1044)
..++||||.=+..++-+.+-|.+... ..+.-.-|-|+.++.+|.++.++|.++ .+. .+++|-|..-|+|+-+.+
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~~m----psVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGAD 1415 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKKYM----PSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGAD 1415 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhhhc----CceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCc
Confidence 45899999999999888887765332 455566799999999999999999988 555 567889999999999999
Q ss_pred EEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCCCCcEEEEecChhhH
Q 001615 632 YVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRIIH 687 (1044)
Q Consensus 632 ~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~~G~c~~L~t~~~~ 687 (1044)
.||-. +-.+||-+.+ ++.-|+-|.|-.+.=-.|||+++...
T Consensus 1416 TVVFv----EHDWNPMrDL-----------QAMDRAHRIGQKrvVNVyRlItrGTL 1456 (1549)
T KOG0392|consen 1416 TVVFV----EHDWNPMRDL-----------QAMDRAHRIGQKRVVNVYRLITRGTL 1456 (1549)
T ss_pred eEEEE----ecCCCchhhH-----------HHHHHHHhhcCceeeeeeeehhcccH
Confidence 99953 2334444432 45556666666666679999987543
No 160
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.22 E-value=0.00021 Score=80.17 Aligned_cols=96 Identities=18% Similarity=0.174 Sum_probs=75.7
Q ss_pred HHHHHHHHHh-----ccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCC--CcE
Q 001615 541 VESTIEYICR-----HEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPN--KRK 613 (1044)
Q Consensus 541 i~~~l~~i~~-----~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g--~~k 613 (1044)
+..+.++|.. ..++.+.|||+.-..-.+.+...+.+ .++..+-+.|..+..+|....+.|... .+-
T Consensus 474 ~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~-------r~vg~IRIDGst~s~~R~ll~qsFQ~seev~V 546 (689)
T KOG1000|consen 474 AAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNK-------RKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRV 546 (689)
T ss_pred cHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHH-------cCCCeEEecCCCCchhHHHHHHHhccccceEE
Confidence 3445556654 24567999999999989999888887 466677799999999999999988764 334
Q ss_pred EEEeecccccccCCCCeEEEEeCCCCccee
Q 001615 614 IVLATNIAESSITIDDVVYVVDCGKAKETS 643 (1044)
Q Consensus 614 IlvaTniae~GidIp~V~~VId~g~~k~~~ 643 (1044)
-|++-..+..|+|+.....||-..++.+.-
T Consensus 547 AvlsItA~gvGLt~tAa~~VVFaEL~wnPg 576 (689)
T KOG1000|consen 547 AVLSITAAGVGLTLTAASVVVFAELHWNPG 576 (689)
T ss_pred EEEEEeecccceeeeccceEEEEEecCCCc
Confidence 577888899999999999999887777543
No 161
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=8.3e-05 Score=83.94 Aligned_cols=339 Identities=17% Similarity=0.217 Sum_probs=184.4
Q ss_pred HHhcCCCchHHHHHHHHHHHcCCeEEEEecCCC---ch--hchHHHHHHHHHHhcc--------C---------------
Q 001615 276 SFREKLPAFKMKAEFLKAVAENQVLVVSGETGC---GK--TTQLPQFILEEELSSL--------R--------------- 327 (1044)
Q Consensus 276 ~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGS---GK--Tt~~p~~il~~~~~~~--------~--------------- 327 (1044)
.+..+.|+++.|.+++....+-+|++. ||++ |+ +..+.+-+|.+++... +
T Consensus 210 ~~K~s~pltalQ~~L~~~m~~YrDl~y--~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~fr 287 (698)
T KOG2340|consen 210 DQKKSEPLTALQKELFKIMFNYRDLLY--PTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFR 287 (698)
T ss_pred cccccCcchHHHHHHHHHHHhhhhhcc--ccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhh
Confidence 356789999999999999999999865 4444 44 2567777777765321 0
Q ss_pred ---CCCcEEEEEcccHHHHHHHHHHHHHH-hCCCCCcEEE---------EE-----------------------------
Q 001615 328 ---GADCNIICTQPRRISAISVAARVSSE-RGENLGETVG---------YQ----------------------------- 365 (1044)
Q Consensus 328 ---~~~~~ilv~~P~r~la~qva~rv~~~-~~~~~g~~vg---------y~----------------------------- 365 (1044)
-..++||+++|+|+.|-.+.+.+... .|..-|.+.- |.
T Consensus 288 DQG~tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~Fr 367 (698)
T KOG2340|consen 288 DQGFTRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFR 367 (698)
T ss_pred hcCCCCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhh
Confidence 13578999999999999998887776 3333222110 11
Q ss_pred --EeccccC------CCCccEEEEchHHHHHHHhc---CC-----CCCccceEEechhhhc-cchhHHHHHHHHHHcccC
Q 001615 366 --IRLESKR------SAQTRLLFCTTGVLLRQLVE---DP-----DLSCVSHLLVDEIHER-GMNEDFLLIILRDLLPRR 428 (1044)
Q Consensus 366 --ir~~~~~------~~~~~I~v~T~g~Ll~~l~~---~~-----~L~~~~~lIiDEaHeR-~~~~d~ll~~lk~~~~~~ 428 (1044)
+.+..+. -..++|+||.|=-| +++.. +. .|+.+.++|||-+|-. +-+-..++.++..+-...
T Consensus 368 iGl~ftkKtikLys~fy~SDIlVaSPLGL-Rmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P 446 (698)
T KOG2340|consen 368 IGLAFTKKTIKLYSKFYKSDILVASPLGL-RMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQP 446 (698)
T ss_pred hhHHHHHHHHHHHhhhcccCeEEecchhh-hhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCc
Confidence 0111110 01457999999444 33333 11 6899999999999931 112233444444332211
Q ss_pred C---------------------cccEEEcccCCChH---HHHhhhCCCCeecCCCCc--ccccee-ehHHHHHhhhcccC
Q 001615 429 P---------------------DLRLILMSATINAD---LFSKYFGNAPTVHIPGLT--FPVTDL-FLEDVLEKTRYKMN 481 (1044)
Q Consensus 429 ~---------------------~~qiilmSATl~~~---~~~~~f~~~~~i~v~g~~--~pv~~~-~l~~~~~~~~~~~~ 481 (1044)
. -.|++++|+-.++. .|..|..+- .|+. .++... -+..+ .
T Consensus 447 ~k~h~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~-----~Gkv~~~~~~~~gsi~~v----~---- 513 (698)
T KOG2340|consen 447 SKQHDVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNM-----AGKVKARNLQSGGSISNV----G---- 513 (698)
T ss_pred ccccCCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhh-----cceeeeccccCCCchhhc----c----
Confidence 1 14677777765544 244444321 1110 000000 00000 0
Q ss_pred ccccccccccccccccccchhhhhhhhhcccccccccchhhhhHHHHHhhhhhhhchHHHHHHHHHHHhccCCCCEEEEe
Q 001615 482 SKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFL 561 (1044)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVFl 561 (1044)
-++.+.+......+-. ......+.+ .+..++-.+.. .....|||+.
T Consensus 514 --------------------~~l~Qvf~ri~~~si~------------~~~D~RFky-Fv~~ImPq~~k-~t~s~~LiyI 559 (698)
T KOG2340|consen 514 --------------------IPLCQVFQRIEVKSII------------ETPDARFKY-FVDKIMPQLIK-RTESGILIYI 559 (698)
T ss_pred --------------------chhhhhhhheeccCcc------------cCchHHHHH-HHHhhchhhcc-cccCceEEEe
Confidence 0000111000000000 000000000 01112222222 2245699999
Q ss_pred CCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccc--cccCCCCeEEEEeCCCC
Q 001615 562 TGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAE--SSITIDDVVYVVDCGKA 639 (1044)
Q Consensus 562 ~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae--~GidIp~V~~VId~g~~ 639 (1044)
|+.-+-.++...++... ..+..+.=++....-.| +=.-|-.|..+|++-|-=+- +--+|.+|.-||-|++|
T Consensus 560 PSYfDFVRvRNy~K~e~-----i~F~~i~EYssk~~vsR--AR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP 632 (698)
T KOG2340|consen 560 PSYFDFVRVRNYMKKEE-----ISFVMINEYSSKSKVSR--ARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPP 632 (698)
T ss_pred cchhhHHHHHHHhhhhh-----cchHHHhhhhhHhhhhH--HHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCC
Confidence 99999999999887632 11111112233222222 23346678899999996553 56789999999999999
Q ss_pred cceeccccccccccccccccHhhHHHhcccCC---CC--CCcEEEEecChhh
Q 001615 640 KETSYDALNKLACLLPSWISKASAHQRRGRAG---RV--QPGVCYKLYPRII 686 (1044)
Q Consensus 640 k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAG---R~--~~G~c~~L~t~~~ 686 (1044)
....|. ++.+.+.+|+- +. ..-.|-.||++-+
T Consensus 633 ~~P~FY---------------sEiinm~~k~~~~gn~d~d~~t~~ilytKyD 669 (698)
T KOG2340|consen 633 NNPHFY---------------SEIINMSDKTTSQGNTDLDIFTVRILYTKYD 669 (698)
T ss_pred CCcHHH---------------HHHHhhhhhhhccCCccccceEEEEEeechh
Confidence 987653 26677777663 32 3357899999844
No 162
>PF13245 AAA_19: Part of AAA domain
Probab=97.96 E-value=2.7e-05 Score=67.53 Aligned_cols=57 Identities=30% Similarity=0.373 Sum_probs=45.3
Q ss_pred HHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHH
Q 001615 293 AVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARV 350 (1044)
Q Consensus 293 ~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv 350 (1044)
++..++.++|.||.|||||+.+...+.+........ +.+|+|+.|++.++..+.+++
T Consensus 6 al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 6 ALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 445577788899999999988887777766432233 568999999999999998888
No 163
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.92 E-value=4.7e-05 Score=79.51 Aligned_cols=122 Identities=25% Similarity=0.294 Sum_probs=70.9
Q ss_pred chHHHHHHHHHHHcC--CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCc
Q 001615 283 AFKMKAEFLKAVAEN--QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGE 360 (1044)
Q Consensus 283 i~~~Q~~~i~~i~~~--~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~ 360 (1044)
+.+-|.+++..+..+ +.++|+|+.|+||||.+-. +.+.+... +.+|+++.||..++..+.+.. +.
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~-~~~~~~~~----g~~v~~~apT~~Aa~~L~~~~----~~---- 68 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKA-LAEALEAA----GKRVIGLAPTNKAAKELREKT----GI---- 68 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHH-HHHHHHHT----T--EEEEESSHHHHHHHHHHH----TS----
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHH-HHHHHHhC----CCeEEEECCcHHHHHHHHHhh----Cc----
Confidence 345799999998644 4789999999999986543 44444332 368999999999988776552 11
Q ss_pred EEEEEEeccccCCCCccEEEEchHHHHHHHhcC-----CCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEE
Q 001615 361 TVGYQIRLESKRSAQTRLLFCTTGVLLRQLVED-----PDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLIL 435 (1044)
Q Consensus 361 ~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~-----~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiil 435 (1044)
-..|-..++...... +.+...++|||||+-. ++...+..+++.+.. .+.|+|+
T Consensus 69 ------------------~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasm--v~~~~~~~ll~~~~~--~~~klil 126 (196)
T PF13604_consen 69 ------------------EAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASM--VDSRQLARLLRLAKK--SGAKLIL 126 (196)
T ss_dssp -------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG---BHHHHHHHHHHS-T---T-EEEE
T ss_pred ------------------chhhHHHHHhcCCcccccccccCCcccEEEEecccc--cCHHHHHHHHHHHHh--cCCEEEE
Confidence 111211111111110 0156778999999994 565555555554433 3567777
Q ss_pred cccC
Q 001615 436 MSAT 439 (1044)
Q Consensus 436 mSAT 439 (1044)
+-=+
T Consensus 127 vGD~ 130 (196)
T PF13604_consen 127 VGDP 130 (196)
T ss_dssp EE-T
T ss_pred ECCc
Confidence 6544
No 164
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.87 E-value=0.0004 Score=88.79 Aligned_cols=135 Identities=16% Similarity=0.124 Sum_probs=83.3
Q ss_pred CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCc-EEEEEEeccccCC-CC
Q 001615 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGE-TVGYQIRLESKRS-AQ 375 (1044)
Q Consensus 298 ~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~-~vgy~ir~~~~~~-~~ 375 (1044)
+.-+|.=-||||||.... ++...+... ...+.|++++-|+.|-.|+.+.+...-....-. ...-.-.+-.... ..
T Consensus 274 ~~G~IWHtqGSGKTlTm~-~~A~~l~~~--~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~~~ 350 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMF-KLARLLLEL--PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELLEDGK 350 (962)
T ss_pred CceEEEeecCCchHHHHH-HHHHHHHhc--cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHHHhcCC
Confidence 458999999999994433 222222222 346799999999999999998887653322110 0000000000111 14
Q ss_pred ccEEEEchHHHHHHHhcCC--CC-CccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccCC
Q 001615 376 TRLLFCTTGVLLRQLVEDP--DL-SCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATI 440 (1044)
Q Consensus 376 ~~I~v~T~g~Ll~~l~~~~--~L-~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSATl 440 (1044)
..|+|+|-+.|-..+.... .+ .+==+||+|||| |+-+.. +-..++..+. +...++||.|+
T Consensus 351 ~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaH-RSQ~G~-~~~~~~~~~~---~a~~~gFTGTP 413 (962)
T COG0610 351 GKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAH-RSQYGE-LAKLLKKALK---KAIFIGFTGTP 413 (962)
T ss_pred CcEEEEEecccchhhhcccccccCCCcEEEEEechh-hccccH-HHHHHHHHhc---cceEEEeeCCc
Confidence 5899999998888776542 12 222368899999 865554 4444444433 47899999997
No 165
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.85 E-value=3.7e-05 Score=74.57 Aligned_cols=119 Identities=24% Similarity=0.319 Sum_probs=67.6
Q ss_pred HcCCeEEEEecCCCchhchHHHHHHHHHHhcc-CCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCC
Q 001615 295 AENQVLVVSGETGCGKTTQLPQFILEEELSSL-RGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRS 373 (1044)
Q Consensus 295 ~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~-~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~ 373 (1044)
++++.++|.|++|+|||+.+-.++.+...... ......+.+..|...-...+++.+...++.....
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------- 68 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------------- 68 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------------
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------------
Confidence 35678999999999999888777766542110 1112345555565555667777787777654322
Q ss_pred CCccEEEEchH----HHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccC
Q 001615 374 AQTRLLFCTTG----VLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT 439 (1044)
Q Consensus 374 ~~~~I~v~T~g----~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSAT 439 (1044)
-.|.. .+.+.+.... ..+|||||+|+-. . +-.+..++.+.. ..++++|+..-.
T Consensus 69 ------~~~~~~l~~~~~~~l~~~~----~~~lviDe~~~l~-~-~~~l~~l~~l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 ------RQTSDELRSLLIDALDRRR----VVLLVIDEADHLF-S-DEFLEFLRSLLN-ESNIKVVLVGTP 125 (131)
T ss_dssp ------TS-HHHHHHHHHHHHHHCT----EEEEEEETTHHHH-T-HHHHHHHHHHTC-SCBEEEEEEESS
T ss_pred ------cCCHHHHHHHHHHHHHhcC----CeEEEEeChHhcC-C-HHHHHHHHHHHh-CCCCeEEEEECh
Confidence 11233 3344443322 2789999999631 3 555555676666 667777776544
No 166
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.84 E-value=9e-05 Score=92.00 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=50.8
Q ss_pred CccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccCCCh
Q 001615 375 QTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINA 442 (1044)
Q Consensus 375 ~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSATl~~ 442 (1044)
...|+++||.+|..-|..+. .+++++.||||||| |...+--.--+++.....+++.-|.+|||....
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ah-r~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRAD-RIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecc-cccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 46799999999988777776 89999999999999 644443333344555556667789999999754
No 167
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.81 E-value=0.00045 Score=81.79 Aligned_cols=113 Identities=18% Similarity=0.232 Sum_probs=89.0
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCC--cEEEEeecccccccCCCCe
Q 001615 553 GDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNK--RKIVLATNIAESSITIDDV 630 (1044)
Q Consensus 553 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~--~kIlvaTniae~GidIp~V 630 (1044)
.+.+||+|-.-..-.+-|...|.. .++..+-|-|+.+-.+|+.+++.|-..+ .-.|++|-...-||++-..
T Consensus 776 ~G~RVLiFSQFTqmLDILE~~L~~-------l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~A 848 (941)
T KOG0389|consen 776 KGDRVLIFSQFTQMLDILEVVLDT-------LGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCA 848 (941)
T ss_pred cCCEEEEeeHHHHHHHHHHHHHHh-------cCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceeccccc
Confidence 457999998766655555555554 5778888999999999999999997653 4578999999999999999
Q ss_pred EEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCCCCcEEEEecChhhH
Q 001615 631 VYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRIIH 687 (1044)
Q Consensus 631 ~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~~G~c~~L~t~~~~ 687 (1044)
++||-++.- |+|.... ++.-|+-|.|-++|=..|+|+++..-
T Consensus 849 n~VIihD~d----FNP~dD~-----------QAEDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 849 NTVIIHDID----FNPYDDK-----------QAEDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred ceEEEeecC----CCCcccc-----------hhHHHHHhhCCcceeEEEEEEecCcH
Confidence 999987654 4444332 67778888888899999999998643
No 168
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.76 E-value=0.00043 Score=83.77 Aligned_cols=139 Identities=20% Similarity=0.242 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEE
Q 001615 285 KMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGY 364 (1044)
Q Consensus 285 ~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy 364 (1044)
..|++++..+..++.++|+|+.|+||||.+...+.............+|++++||--+|..+.+.+..... .+...
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~-~l~~~--- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVK-NLAAA--- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhc-ccccc---
Confidence 68999999999999999999999999987765543321111111135799999999999888777654322 11100
Q ss_pred EEeccccCCCCccEEEEchHHHHHHHhc-------CCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcc
Q 001615 365 QIRLESKRSAQTRLLFCTTGVLLRQLVE-------DPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (1044)
Q Consensus 365 ~ir~~~~~~~~~~I~v~T~g~Ll~~l~~-------~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmS 437 (1044)
........+-..|--+|+..-.. ......+++||||||=. ++...+..+++.+ ++..|+|++-
T Consensus 224 -----~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSM--vd~~l~~~ll~al---~~~~rlIlvG 293 (586)
T TIGR01447 224 -----EALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASM--VDLPLMAKLLKAL---PPNTKLILLG 293 (586)
T ss_pred -----hhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEccccc--CCHHHHHHHHHhc---CCCCEEEEEC
Confidence 00000001112333333322110 11234689999999984 7777666666543 4567787765
No 169
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.74 E-value=0.00011 Score=76.55 Aligned_cols=126 Identities=26% Similarity=0.352 Sum_probs=79.3
Q ss_pred CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCCcc
Q 001615 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTR 377 (1044)
Q Consensus 298 ~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~~~ 377 (1044)
++++++||||+||||.+.-........ +....++++-..|+.|.+.-+..++.++..+ +..+...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~-----~~~~~~~------- 66 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPF-----YVARTES------- 66 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEE-----EESSTTS-------
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhcccc-----chhhcch-------
Confidence 478999999999999988877665433 4556777788899999988888888876432 1111000
Q ss_pred EEEEchHHHH-HHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcc-cCCcccEEEcccCCChHH
Q 001615 378 LLFCTTGVLL-RQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP-RRPDLRLILMSATINADL 444 (1044)
Q Consensus 378 I~v~T~g~Ll-~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~-~~~~~qiilmSATl~~~~ 444 (1044)
.|.-++ +.+.. ..-+++++|+||-+- |+....-++.-++.+.. ..++--+++||||...+.
T Consensus 67 ----~~~~~~~~~l~~-~~~~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~ 129 (196)
T PF00448_consen 67 ----DPAEIAREALEK-FRKKGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQED 129 (196)
T ss_dssp ----CHHHHHHHHHHH-HHHTTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH
T ss_pred ----hhHHHHHHHHHH-HhhcCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccChHH
Confidence 133333 33321 122468999999998 65544333333444333 356677888999996664
No 170
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=0.00021 Score=81.70 Aligned_cols=130 Identities=21% Similarity=0.230 Sum_probs=76.9
Q ss_pred CCeEEEEecCCCchhchHHHHHHHHHHhc-cCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCC
Q 001615 297 NQVLVVSGETGCGKTTQLPQFILEEELSS-LRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQ 375 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~p~~il~~~~~~-~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~ 375 (1044)
.++++++||||+||||.+........... ..+....++.+=+.|..|...-...++.++.++ .
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv----~------------ 237 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV----K------------ 237 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce----E------------
Confidence 46899999999999998877665433221 123333444455778887766555555444321 0
Q ss_pred ccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcc-cCCc-ccEEEcccCCChHHHHhhh
Q 001615 376 TRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP-RRPD-LRLILMSATINADLFSKYF 449 (1044)
Q Consensus 376 ~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~-~~~~-~qiilmSATl~~~~~~~~f 449 (1044)
..-++.-+...+.. +.++++||||++. |+......+.-++.++. ..++ -.++++|||...+.+.+.|
T Consensus 238 ---~~~~~~~l~~~L~~---~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 238 ---AIESFKDLKEEITQ---SKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred ---eeCcHHHHHHHHHH---hCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHH
Confidence 11134444444432 4689999999999 65432222333344433 3333 4678899999777655444
No 171
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.71 E-value=0.0024 Score=77.95 Aligned_cols=124 Identities=19% Similarity=0.126 Sum_probs=77.5
Q ss_pred cCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC
Q 001615 279 EKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENL 358 (1044)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~ 358 (1044)
+.+-.+++-.|++-.+.-+.--|.-..||=|||+...+++.-..+. | ..+.++.---=||.--++.+...+ ..+
T Consensus 75 Rvlg~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~---g--kgVhvVTvNdYLA~RDae~m~~l~-~~L 148 (822)
T COG0653 75 RVLGMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA---G--KGVHVVTVNDYLARRDAEWMGPLY-EFL 148 (822)
T ss_pred HhcCCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC---C--CCcEEeeehHHhhhhCHHHHHHHH-HHc
Confidence 3444455556688887777777899999999998888877766554 1 234443344445544444443322 346
Q ss_pred CcEEEEEEecccc----CCCCccEEEEchHH-----HHHHHhcC---CCCCccceEEechhh
Q 001615 359 GETVGYQIRLESK----RSAQTRLLFCTTGV-----LLRQLVED---PDLSCVSHLLVDEIH 408 (1044)
Q Consensus 359 g~~vgy~ir~~~~----~~~~~~I~v~T~g~-----Ll~~l~~~---~~L~~~~~lIiDEaH 408 (1044)
|.+||..+..... ..=.++|+|.|..- |.+-+... ..+....+-|+||+|
T Consensus 149 GlsvG~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvD 210 (822)
T COG0653 149 GLSVGVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVD 210 (822)
T ss_pred CCceeeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchh
Confidence 7777776554322 22278999999744 33333222 245678899999998
No 172
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.67 E-value=1.7e-05 Score=96.05 Aligned_cols=154 Identities=16% Similarity=0.152 Sum_probs=100.2
Q ss_pred CCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEE---EeccccCC
Q 001615 297 NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQ---IRLESKRS 373 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~---ir~~~~~~ 373 (1044)
+.++++-+|||+|||..+-..+...... .+.++++++.|-.+|...-+++..+..... |..++-. +.-+-..-
T Consensus 943 d~~~~~g~ptgsgkt~~ae~a~~~~~~~---~p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~pd~~~v 1018 (1230)
T KOG0952|consen 943 DLNFLLGAPTGSGKTVVAELAIFRALSY---YPGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTPDVKAV 1018 (1230)
T ss_pred chhhhhcCCccCcchhHHHHHHHHHhcc---CCCccEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCCChhhe
Confidence 3457888999999998888777665433 345799999999999988887776655444 4444321 11111122
Q ss_pred CCccEEEEchHHHHHHHh---cCCCCCccceEEechhhhccchhHHHHHHHHHHc-----ccCCcccEEEcc-cCCChHH
Q 001615 374 AQTRLLFCTTGVLLRQLV---EDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLL-----PRRPDLRLILMS-ATINADL 444 (1044)
Q Consensus 374 ~~~~I~v~T~g~Ll~~l~---~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~-----~~~~~~qiilmS-ATl~~~~ 444 (1044)
..++|++.||+..-...+ ....+.+++.+|+||.|.-+-+-.-.+.++.... ...+.+|++++| |-.++..
T Consensus 1019 ~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~d 1098 (1230)
T KOG0952|consen 1019 READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANAND 1098 (1230)
T ss_pred ecCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhccHH
Confidence 367899999987665544 3346889999999999963333222222111111 123456777766 4458889
Q ss_pred HHhhhCCCCe
Q 001615 445 FSKYFGNAPT 454 (1044)
Q Consensus 445 ~~~~f~~~~~ 454 (1044)
+++|++-.+.
T Consensus 1099 la~wl~~~~~ 1108 (1230)
T KOG0952|consen 1099 LADWLNIKDM 1108 (1230)
T ss_pred HHHHhCCCCc
Confidence 9999986655
No 173
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.65 E-value=0.00069 Score=82.18 Aligned_cols=137 Identities=20% Similarity=0.279 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEE
Q 001615 284 FKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVG 363 (1044)
Q Consensus 284 ~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vg 363 (1044)
.+.|++++.....++.++|+|++|+||||.+...+... .....+...+|+++.||.-+|..+.+.+..... .++..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l-~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~-~~~~~-- 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL-IQLADGERCRIRLAAPTGKAAARLTESLGKALR-QLPLT-- 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhh-ccccc--
Confidence 37899999999999999999999999998776554432 221222346899999999999888877654322 11100
Q ss_pred EEEeccccCCCCccEEEEchHHHHHHHhcCC----------CCCccceEEechhhhccchhHHHHHHHHHHcccCCcccE
Q 001615 364 YQIRLESKRSAQTRLLFCTTGVLLRQLVEDP----------DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRL 433 (1044)
Q Consensus 364 y~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~----------~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qi 433 (1044)
.........-..| +.++|...+ ....+++|||||+-. ++...+..+++. ..++.|+
T Consensus 230 ------~~~~~~~~~~a~T---iHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSM--vd~~lm~~ll~a---l~~~~rl 295 (615)
T PRK10875 230 ------DEQKKRIPEEAST---LHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASM--VDLPMMARLIDA---LPPHARV 295 (615)
T ss_pred ------hhhhhcCCCchHH---HHHHhCcCCCccchhhccccCCCCCeEEEChHhc--ccHHHHHHHHHh---cccCCEE
Confidence 0000000011122 333332211 234568999999994 777766666664 3456788
Q ss_pred EEccc
Q 001615 434 ILMSA 438 (1044)
Q Consensus 434 ilmSA 438 (1044)
|++-=
T Consensus 296 IlvGD 300 (615)
T PRK10875 296 IFLGD 300 (615)
T ss_pred EEecc
Confidence 87753
No 174
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.62 E-value=0.00025 Score=73.62 Aligned_cols=58 Identities=29% Similarity=0.289 Sum_probs=41.8
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHH
Q 001615 281 LPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRI 341 (1044)
Q Consensus 281 lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~ 341 (1044)
-|.+..|..+++++.+.+.+++.||.|||||+.+....++.... +...+|+++-|..+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~---g~~~kiii~Rp~v~ 60 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE---GEYDKIIITRPPVE 60 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT---TS-SEEEEEE-S--
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh---CCCcEEEEEecCCC
Confidence 46778999999999999999999999999999888888887654 34558999888654
No 175
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.53 E-value=0.00025 Score=82.13 Aligned_cols=63 Identities=17% Similarity=0.322 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHcC-CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHH
Q 001615 284 FKMKAEFLKAVAEN-QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVS 351 (1044)
Q Consensus 284 ~~~Q~~~i~~i~~~-~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~ 351 (1044)
.+.|++++....++ ...+|.||+|+|||+.+...|.+.... +.+|||..||.+++..+.+|+.
T Consensus 187 n~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~-----~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 187 NSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ-----KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc-----CCeEEEEcCchHHHHHHHHHhc
Confidence 46799999998888 567889999999998888877776643 4599999999999999988743
No 176
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.53 E-value=0.00053 Score=74.21 Aligned_cols=124 Identities=17% Similarity=0.096 Sum_probs=77.9
Q ss_pred hcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 001615 278 REKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (1044)
Q Consensus 278 r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~ 357 (1044)
-..+.++..|--.+=++..|+ |+...||=|||+.+.++.+-.++. | ..|=|+.....||..=++.+...+. .
T Consensus 73 ~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~---G--~~V~vvT~NdyLA~RD~~~~~~~y~-~ 144 (266)
T PF07517_consen 73 TLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ---G--KGVHVVTSNDYLAKRDAEEMRPFYE-F 144 (266)
T ss_dssp HTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT---S--S-EEEEESSHHHHHHHHHHHHHHHH-H
T ss_pred HcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh---c--CCcEEEeccHHHhhccHHHHHHHHH-H
Confidence 344555666655554555666 899999999998888877766653 3 3455555777888877777665543 5
Q ss_pred CCcEEEEEEeccccC----CCCccEEEEchHHHHH-HHhc----CC---CCCccceEEechhhh
Q 001615 358 LGETVGYQIRLESKR----SAQTRLLFCTTGVLLR-QLVE----DP---DLSCVSHLLVDEIHE 409 (1044)
Q Consensus 358 ~g~~vgy~ir~~~~~----~~~~~I~v~T~g~Ll~-~l~~----~~---~L~~~~~lIiDEaHe 409 (1044)
+|.+||+........ .-.++|+|+|..-|.- .|.. +. ....+.++||||||.
T Consensus 145 LGlsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs 208 (266)
T PF07517_consen 145 LGLSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDS 208 (266)
T ss_dssp TT--EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHH
T ss_pred hhhccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccce
Confidence 677888765433211 1146899999876543 3332 22 257899999999995
No 177
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.45 E-value=0.012 Score=74.84 Aligned_cols=126 Identities=20% Similarity=0.163 Sum_probs=82.2
Q ss_pred cCCCchHHHHHHHHHHHc-CCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 001615 279 EKLPAFKMKAEFLKAVAE-NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (1044)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~-~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~ 357 (1044)
..+.+.+-|.+++..+.. ++.++|+|..|+||||.+ ..+.+.+.. .+.+|+.++||-.+|..+.+ ..+..
T Consensus 343 ~g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l-~~~~~~~e~----~G~~V~~~ApTGkAA~~L~e----~tGi~ 413 (988)
T PRK13889 343 RGLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAWEA----AGYEVRGAALSGIAAENLEG----GSGIA 413 (988)
T ss_pred cCCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHHHHHH----cCCeEEEecCcHHHHHHHhh----ccCcc
Confidence 456789999999999887 457899999999999863 344443322 24589999999888765532 11110
Q ss_pred CCcEEEEEEeccccCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEc
Q 001615 358 LGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILM 436 (1044)
Q Consensus 358 ~g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilm 436 (1044)
-.|-..|+..+..+. .+...++|||||+-. +++..+..+++.+.. ...|+|++
T Consensus 414 ----------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEASM--v~~~~m~~LL~~a~~--~garvVLV 467 (988)
T PRK13889 414 ----------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAGM--VGTRQLERVLSHAAD--AGAKVVLV 467 (988)
T ss_pred ----------------------hhhHHHHHhhhcccccccccCcEEEEECccc--CCHHHHHHHHHhhhh--CCCEEEEE
Confidence 012233332222222 567889999999993 777767666665433 35788877
Q ss_pred ccC
Q 001615 437 SAT 439 (1044)
Q Consensus 437 SAT 439 (1044)
-=+
T Consensus 468 GD~ 470 (988)
T PRK13889 468 GDP 470 (988)
T ss_pred CCH
Confidence 644
No 178
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.001 Score=75.46 Aligned_cols=126 Identities=23% Similarity=0.221 Sum_probs=77.1
Q ss_pred HHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEc-ccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccC
Q 001615 294 VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQ-PRRISAISVAARVSSERGENLGETVGYQIRLESKR 372 (1044)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~-P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~ 372 (1044)
+..+.+++++||||+||||.+..+........ +.....+++. ..|+.+.+.....++.++..+
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~--G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~-------------- 197 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRF--GASKVALLTTDSYRIGGHEQLRIFGKILGVPV-------------- 197 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCeEEEEecccccccHHHHHHHHHHHcCCce--------------
Confidence 45688999999999999998887766554332 2112233333 446666666555665554321
Q ss_pred CCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcc-cCCcccEEEcccCCChHH
Q 001615 373 SAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP-RRPDLRLILMSATINADL 444 (1044)
Q Consensus 373 ~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~-~~~~~qiilmSATl~~~~ 444 (1044)
..+.+++-+...+. .+.+.++|+||++- |....+.+...+..+.. ..+.-.++++|||...+.
T Consensus 198 -----~~~~~~~~l~~~l~---~l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~ 261 (374)
T PRK14722 198 -----HAVKDGGDLQLALA---ELRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDT 261 (374)
T ss_pred -----EecCCcccHHHHHH---HhcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHH
Confidence 11223333433332 24678999999998 55545556566665533 334557889999986654
No 179
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.42 E-value=0.00043 Score=76.82 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=53.3
Q ss_pred CchHHHHH----HHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCC-CCcEEEEEcccHHHHHHHHHHHHH
Q 001615 282 PAFKMKAE----FLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRG-ADCNIICTQPRRISAISVAARVSS 352 (1044)
Q Consensus 282 pi~~~Q~~----~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~-~~~~ilv~~P~r~la~qva~rv~~ 352 (1044)
+.++.|.+ +...+.+++.+++.||||+|||++++.+++......... ...+|+++.+|..+..|....+.+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 34778888 566667899999999999999999999998765543221 224789999999987777555543
No 180
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.42 E-value=0.00043 Score=76.82 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=53.3
Q ss_pred CchHHHHH----HHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCC-CCcEEEEEcccHHHHHHHHHHHHH
Q 001615 282 PAFKMKAE----FLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRG-ADCNIICTQPRRISAISVAARVSS 352 (1044)
Q Consensus 282 pi~~~Q~~----~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~-~~~~ilv~~P~r~la~qva~rv~~ 352 (1044)
+.++.|.+ +...+.+++.+++.||||+|||++++.+++......... ...+|+++.+|..+..|....+.+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 34778888 566667899999999999999999999998765543221 224789999999987777555543
No 181
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.37 E-value=0.00046 Score=79.14 Aligned_cols=91 Identities=14% Similarity=0.190 Sum_probs=59.2
Q ss_pred CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCCcc
Q 001615 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTR 377 (1044)
Q Consensus 298 ~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~~~ 377 (1044)
++++|.|..|||||..+...+.+. .. ...+..++++.+...+...+.+.++.... .....
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l-~~--~~~~~~~~~l~~n~~l~~~l~~~l~~~~~-----------------~~~~~ 61 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL-QN--SEEGKKVLYLCGNHPLRNKLREQLAKKYN-----------------PKLKK 61 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh-hc--cccCCceEEEEecchHHHHHHHHHhhhcc-----------------cchhh
Confidence 478999999999996655544443 11 11244677777999998888777765430 00123
Q ss_pred EEEEchHHHHHHHh-cCCCCCccceEEechhh
Q 001615 378 LLFCTTGVLLRQLV-EDPDLSCVSHLLVDEIH 408 (1044)
Q Consensus 378 I~v~T~g~Ll~~l~-~~~~L~~~~~lIiDEaH 408 (1044)
..+..+..+...+. .......+++|||||||
T Consensus 62 ~~~~~~~~~i~~~~~~~~~~~~~DviivDEAq 93 (352)
T PF09848_consen 62 SDFRKPTSFINNYSESDKEKNKYDVIIVDEAQ 93 (352)
T ss_pred hhhhhhHHHHhhcccccccCCcCCEEEEehhH
Confidence 34445555555443 33466889999999999
No 182
>PRK10536 hypothetical protein; Provisional
Probab=97.36 E-value=0.00035 Score=74.54 Aligned_cols=61 Identities=30% Similarity=0.383 Sum_probs=48.1
Q ss_pred cCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHH
Q 001615 279 EKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRIS 342 (1044)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~l 342 (1044)
...|.+..|...+.++.++..+++.|++|||||+.+..+.++.+.. +.-.+|+++-|....
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~---~~~~kIiI~RP~v~~ 116 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH---KDVDRIIVTRPVLQA 116 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc---CCeeEEEEeCCCCCc
Confidence 3457778999999999999999999999999998888877776543 224578888777543
No 183
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.36 E-value=0.002 Score=72.63 Aligned_cols=129 Identities=22% Similarity=0.263 Sum_probs=89.1
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCC
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQ 375 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~ 375 (1044)
.+++++++||||.||||.+.-......+.. ......+|-+=-.|+-|...-+..++.++.++
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~-~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~----------------- 263 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLK-KKKKVAIITTDTYRIGAVEQLKTYADIMGVPL----------------- 263 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhc-cCcceEEEEeccchhhHHHHHHHHHHHhCCce-----------------
Confidence 388999999999999988776655544221 12233445555789998888788888877542
Q ss_pred ccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCc-ccEEEcccCCChHHHHhh
Q 001615 376 TRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPD-LRLILMSATINADLFSKY 448 (1044)
Q Consensus 376 ~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~-~qiilmSATl~~~~~~~~ 448 (1044)
.++-+|.=|...+. .+.++++|.||=+- |+........-++.+.....+ --.+.+|||...+.+..-
T Consensus 264 --~vv~~~~el~~ai~---~l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei 331 (407)
T COG1419 264 --EVVYSPKELAEAIE---ALRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEI 331 (407)
T ss_pred --EEecCHHHHHHHHH---HhhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHH
Confidence 33445666666553 56788999999999 776666666666766654444 455789999977765433
No 184
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.35 E-value=0.0018 Score=73.00 Aligned_cols=124 Identities=19% Similarity=0.255 Sum_probs=71.0
Q ss_pred CCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCCc
Q 001615 297 NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQT 376 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~~ 376 (1044)
.++++++||||+||||.+........ . .+...-++-+=|.|+.|.+.-...++..+..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~-~--~GkkVglI~aDt~RiaAvEQLk~yae~lgip------------------- 298 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH-G--KKKTVGFITTDHSRIGTVQQLQDYVKTIGFE------------------- 298 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH-H--cCCcEEEEecCCcchHHHHHHHHHhhhcCCc-------------------
Confidence 46899999999999988877665432 2 2222223333366765554433333322211
Q ss_pred cEEEEchHHHHHHHhcCCCCCccceEEechhhhccch-hHHHHHHHHHHcccCCcccEEEcccCCChH
Q 001615 377 RLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMN-EDFLLIILRDLLPRRPDLRLILMSATINAD 443 (1044)
Q Consensus 377 ~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~-~d~ll~~lk~~~~~~~~~qiilmSATl~~~ 443 (1044)
-+...+|..+.+.+..-..-.++++|+||-+= |... .+.+..+.+.+....|+..++.+|||....
T Consensus 299 v~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaG-Rs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~ 365 (436)
T PRK11889 299 VIAVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 365 (436)
T ss_pred EEecCCHHHHHHHHHHHHhccCCCEEEEeCcc-ccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH
Confidence 11223677776666432222368999999997 5443 333444433333445666677799987544
No 185
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.35 E-value=0.00066 Score=82.36 Aligned_cols=111 Identities=14% Similarity=0.125 Sum_probs=81.2
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCC---CCCCcEEEEeecccccccCCC
Q 001615 552 EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRP---PPNKRKIVLATNIAESSITID 628 (1044)
Q Consensus 552 ~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f---~~g~~kIlvaTniae~GidIp 628 (1044)
..+++||.|+.-..-+..+.++|.- ..+.-+-+-|....++|-..++.| .+.....|++|-....|++.-
T Consensus 724 atgHRVLlF~qMTrlmdimEdyL~~-------~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQ 796 (1157)
T KOG0386|consen 724 ATGHRVLLFSQMTRLMDILEDYLQI-------REYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQ 796 (1157)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHhh-------hhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchh
Confidence 4578999999988888888888874 455666688888888886655555 455678999999999999999
Q ss_pred CeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC---CCcEEEEecChhhH
Q 001615 629 DVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV---QPGVCYKLYPRIIH 687 (1044)
Q Consensus 629 ~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~---~~G~c~~L~t~~~~ 687 (1044)
-.+.||-++---+.. ...|+.-||-|. +.=..++|.+-..+
T Consensus 797 tadtviifdsdwnp~------------------~d~qaqdrahrigq~~evRv~rl~tv~sv 840 (1157)
T KOG0386|consen 797 TADTVIIFDSDWNPH------------------QDLQAQDRAHRIGQKKEVRVLRLITVNSV 840 (1157)
T ss_pred hcceEEEecCCCCch------------------hHHHHHHHHHHhhchhheeeeeeehhhHH
Confidence 888888766443333 455555555554 56678888876544
No 186
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.35 E-value=0.0082 Score=70.14 Aligned_cols=127 Identities=20% Similarity=0.248 Sum_probs=71.9
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCC
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQ 375 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~ 375 (1044)
.+++++++||||+||||.+..+........ .+....++-+-|.|..+.......+..++..+
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~-~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~----------------- 281 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLY-GKKKVALITLDTYRIGAVEQLKTYAKIMGIPV----------------- 281 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEECCccHHHHHHHHHHHHHHhCCce-----------------
Confidence 467899999999999998877666543111 12223333344667766554444444443211
Q ss_pred ccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcc--cCCcccEEEcccCCChHHHH
Q 001615 376 TRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP--RRPDLRLILMSATINADLFS 446 (1044)
Q Consensus 376 ~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~--~~~~~qiilmSATl~~~~~~ 446 (1044)
....++.-+...+.. +.++++||||.+-....+...+.. ++.++. ..+....+++|||.....+.
T Consensus 282 --~~~~~~~~l~~~l~~---~~~~DlVlIDt~G~~~~d~~~~~~-L~~ll~~~~~~~~~~LVl~a~~~~~~l~ 348 (424)
T PRK05703 282 --EVVYDPKELAKALEQ---LRDCDVILIDTAGRSQRDKRLIEE-LKALIEFSGEPIDVYLVLSATTKYEDLK 348 (424)
T ss_pred --EccCCHHhHHHHHHH---hCCCCEEEEeCCCCCCCCHHHHHH-HHHHHhccCCCCeEEEEEECCCCHHHHH
Confidence 112344445555542 457899999999732233333222 333332 23445678899998766544
No 187
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.34 E-value=0.001 Score=82.81 Aligned_cols=137 Identities=17% Similarity=0.206 Sum_probs=78.4
Q ss_pred CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHH-----HHhCC-CCCcEEEEEEecccc
Q 001615 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVS-----SERGE-NLGETVGYQIRLESK 371 (1044)
Q Consensus 298 ~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~-----~~~~~-~~g~~vgy~ir~~~~ 371 (1044)
.++.+.++||+|||..+.-.|++..... ...+.|+++|+.+.-..+.+-+. ..+.. .-+..+-+.+-...+
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~---~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k 136 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY---GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGD 136 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc---CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCc
Confidence 5899999999999988887777654332 23578999999887776654432 11211 112323332211000
Q ss_pred ---------C-------------CCCccEEEEchHHHHHHHhc-----------C--C--CCCcc-ceEEechhhhccch
Q 001615 372 ---------R-------------SAQTRLLFCTTGVLLRQLVE-----------D--P--DLSCV-SHLLVDEIHERGMN 413 (1044)
Q Consensus 372 ---------~-------------~~~~~I~v~T~g~Ll~~l~~-----------~--~--~L~~~-~~lIiDEaHeR~~~ 413 (1044)
. .....|+++|.++|-..... . | .+... -+||+||.|+..-.
T Consensus 137 ~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~ 216 (986)
T PRK15483 137 KKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD 216 (986)
T ss_pred ccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc
Confidence 0 11468999999988653220 0 1 11111 37999999953221
Q ss_pred hHHHHHHHHHHcccCCcccEEEcccCCCh
Q 001615 414 EDFLLIILRDLLPRRPDLRLILMSATINA 442 (1044)
Q Consensus 414 ~d~ll~~lk~~~~~~~~~qiilmSATl~~ 442 (1044)
... .+.+....|. -++.+|||.+.
T Consensus 217 ~k~----~~~i~~lnpl-~~lrysAT~~~ 240 (986)
T PRK15483 217 NKF----YQAIEALKPQ-MIIRFGATFPD 240 (986)
T ss_pred hHH----HHHHHhcCcc-cEEEEeeecCC
Confidence 111 1333344443 36679999975
No 188
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.31 E-value=0.0014 Score=81.73 Aligned_cols=128 Identities=23% Similarity=0.215 Sum_probs=81.6
Q ss_pred hcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 001615 278 REKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (1044)
Q Consensus 278 r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~ 357 (1044)
.....+.+-|.+++..+..++.++|+|+.|+||||.+- .+++.+... +....|++++||--+|..+. +..+..
T Consensus 319 ~~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~-~i~~~~~~~--~~~~~v~l~ApTg~AA~~L~----e~~g~~ 391 (720)
T TIGR01448 319 KLRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITR-AIIELAEEL--GGLLPVGLAAPTGRAAKRLG----EVTGLT 391 (720)
T ss_pred hcCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHH-HHHHHHHHc--CCCceEEEEeCchHHHHHHH----HhcCCc
Confidence 34567889999999999999999999999999997664 334433222 11257889999999886543 322211
Q ss_pred CCcEEEEEEeccccCCCCccEEEEchHHHHHHHhc------CCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcc
Q 001615 358 LGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVE------DPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDL 431 (1044)
Q Consensus 358 ~g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~------~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~ 431 (1044)
-.|-..|+..... .......++||||||+. ++...+..+++.+ .+..
T Consensus 392 ----------------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSM--vd~~~~~~Ll~~~---~~~~ 444 (720)
T TIGR01448 392 ----------------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSM--MDTWLALSLLAAL---PDHA 444 (720)
T ss_pred ----------------------cccHHHHhhccCCccchhhhhccccCCEEEEecccc--CCHHHHHHHHHhC---CCCC
Confidence 0111122211100 01124578999999994 6777666666533 3567
Q ss_pred cEEEcccC
Q 001615 432 RLILMSAT 439 (1044)
Q Consensus 432 qiilmSAT 439 (1044)
|+|++--+
T Consensus 445 rlilvGD~ 452 (720)
T TIGR01448 445 RLLLVGDT 452 (720)
T ss_pred EEEEECcc
Confidence 88876544
No 189
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.22 E-value=0.0071 Score=78.39 Aligned_cols=110 Identities=20% Similarity=0.238 Sum_probs=89.0
Q ss_pred CEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCC--CcEEEEeecccccccCCCCeEEE
Q 001615 556 AILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPN--KRKIVLATNIAESSITIDDVVYV 633 (1044)
Q Consensus 556 ~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g--~~kIlvaTniae~GidIp~V~~V 633 (1044)
++|||.+-....+-+...+... .+....++|+++..+|..+++.|..+ ..-.+++|-.+..|++.-..+.|
T Consensus 713 kvlifsq~t~~l~il~~~l~~~-------~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~v 785 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKAL-------GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTV 785 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhc-------CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceE
Confidence 7999999999999888888862 36688899999999999999999985 56778888899999999999999
Q ss_pred EeCCCCcceeccccccccccccccccHhhHHHhcccCCCCCCcEEEEecChhhH
Q 001615 634 VDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRIIH 687 (1044)
Q Consensus 634 Id~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~~G~c~~L~t~~~~ 687 (1044)
|.++...+.. -...+..|+-|.|+.++=..|++.++...
T Consensus 786 i~~d~~wnp~---------------~~~Qa~dRa~RigQ~~~v~v~r~i~~~ti 824 (866)
T COG0553 786 ILFDPWWNPA---------------VELQAIDRAHRIGQKRPVKVYRLITRGTI 824 (866)
T ss_pred EEeccccChH---------------HHHHHHHHHHHhcCcceeEEEEeecCCcH
Confidence 9977655332 12256666666677788889999987653
No 190
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.19 E-value=0.0028 Score=66.40 Aligned_cols=111 Identities=14% Similarity=0.187 Sum_probs=76.3
Q ss_pred HHHHhcCCCchHHHHHHHHHHHc---CCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHH
Q 001615 274 MLSFREKLPAFKMKAEFLKAVAE---NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARV 350 (1044)
Q Consensus 274 ~~~~r~~lpi~~~Q~~~i~~i~~---~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv 350 (1044)
+++....+=|.+.|.++...+.+ +++.+...-.|.|||+.+ .|++...++++ ..-+.+++| +.|..|.++-+
T Consensus 15 l~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg---~~LvrviVp-k~Ll~q~~~~L 89 (229)
T PF12340_consen 15 LFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALADG---SRLVRVIVP-KALLEQMRQML 89 (229)
T ss_pred HHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcCC---CcEEEEEcC-HHHHHHHHHHH
Confidence 66777888899999999998876 478999999999999655 35555555542 234555556 55888888888
Q ss_pred HHHhCCCCCcEEEEEEeccccCC-----------------CCccEEEEchHHHHHHH
Q 001615 351 SSERGENLGETVGYQIRLESKRS-----------------AQTRLLFCTTGVLLRQL 390 (1044)
Q Consensus 351 ~~~~~~~~g~~vgy~ir~~~~~~-----------------~~~~I~v~T~g~Ll~~l 390 (1044)
...++.-++..| |.+.|+.... ....|+++||+.++.+.
T Consensus 90 ~~~lg~l~~r~i-~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~ 145 (229)
T PF12340_consen 90 RSRLGGLLNRRI-YHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFK 145 (229)
T ss_pred HHHHHHHhCCee-EEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHH
Confidence 777765555544 3444433221 13349999999876543
No 191
>PF05729 NACHT: NACHT domain
Probab=97.11 E-value=0.0017 Score=65.40 Aligned_cols=63 Identities=22% Similarity=0.338 Sum_probs=40.4
Q ss_pred eEEechhhhccchhH-----HHHHHHHHHccc--CCcccEEEcccCCChHHHHhhhCCCCeecCCCCccc
Q 001615 401 HLLVDEIHERGMNED-----FLLIILRDLLPR--RPDLRLILMSATINADLFSKYFGNAPTVHIPGLTFP 463 (1044)
Q Consensus 401 ~lIiDEaHeR~~~~d-----~ll~~lk~~~~~--~~~~qiilmSATl~~~~~~~~f~~~~~i~v~g~~~p 463 (1044)
+||||=+||-.-..+ ....+++.++.. .++.++++.|.+-....+..++.....+.+.+...+
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 489999997543222 244445555544 678999988887666667777776656666554433
No 192
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09 E-value=0.003 Score=71.07 Aligned_cols=129 Identities=19% Similarity=0.268 Sum_probs=74.8
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCC
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQ 375 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~ 375 (1044)
.+++++++||||+||||.+........ . .+....++-+=|.|..|...-+..++..+.. +
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~-~--~g~~V~lItaDtyR~gAveQLk~yae~lgvp----v------------- 264 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL-K--QNRTVGFITTDTFRSGAVEQFQGYADKLDVE----L------------- 264 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-H--cCCeEEEEeCCccCccHHHHHHHHhhcCCCC----E-------------
Confidence 477899999999999988877765432 2 2323334444467776654433333332211 0
Q ss_pred ccEEEEchHHHHHHHhcCCCCCccceEEechhhhccc-hhHHHHHHHHHHc-ccCCcccEEEcccCCChHHHHhh
Q 001615 376 TRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGM-NEDFLLIILRDLL-PRRPDLRLILMSATINADLFSKY 448 (1044)
Q Consensus 376 ~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~-~~d~ll~~lk~~~-~~~~~~qiilmSATl~~~~~~~~ 448 (1044)
....+|.-|.+.+..-....++++||||=+= |+. +.+.+.. ++.+. ...|+.-++.+|||.......+.
T Consensus 265 --~~~~dp~dL~~al~~l~~~~~~D~VLIDTAG-r~~~d~~~l~E-L~~l~~~~~p~~~~LVLsag~~~~d~~~i 335 (407)
T PRK12726 265 --IVATSPAELEEAVQYMTYVNCVDHILIDTVG-RNYLAEESVSE-ISAYTDVVHPDLTCFTFSSGMKSADVMTI 335 (407)
T ss_pred --EecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCccCHHHHHH-HHHHhhccCCceEEEECCCcccHHHHHHH
Confidence 1123566665555332233578999999997 543 3333333 33333 34566667889998876554443
No 193
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.02 E-value=0.0058 Score=59.67 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=22.8
Q ss_pred HHHHHHHHc--CCeEEEEecCCCchhchHHHHHHHH
Q 001615 288 AEFLKAVAE--NQVLVVSGETGCGKTTQLPQFILEE 321 (1044)
Q Consensus 288 ~~~i~~i~~--~~~vii~a~TGSGKTt~~p~~il~~ 321 (1044)
.++...+.. ++.++|.|++|+|||+.+ ..+...
T Consensus 8 ~~i~~~~~~~~~~~v~i~G~~G~GKT~l~-~~i~~~ 42 (151)
T cd00009 8 EALREALELPPPKNLLLYGPPGTGKTTLA-RAIANE 42 (151)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHH-HHHHHH
Confidence 445555555 789999999999999644 344443
No 194
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.02 E-value=0.0014 Score=70.16 Aligned_cols=69 Identities=19% Similarity=0.258 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHcCCe-EEEEecCCCchhchHHHHHHHHHH---hccCCCCcEEEEEcccHHHHHHHHHHHHH
Q 001615 284 FKMKAEFLKAVAENQV-LVVSGETGCGKTTQLPQFILEEEL---SSLRGADCNIICTQPRRISAISVAARVSS 352 (1044)
Q Consensus 284 ~~~Q~~~i~~i~~~~~-vii~a~TGSGKTt~~p~~il~~~~---~~~~~~~~~ilv~~P~r~la~qva~rv~~ 352 (1044)
.+.|.+++..+++... .+|.||+|+|||+.+...+..... ......+.+||++.|+..++..+.+++.+
T Consensus 3 n~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 3 NESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4579999999999987 999999999999777765555421 01123456899999999999999999876
No 195
>PRK06526 transposase; Provisional
Probab=96.94 E-value=0.0027 Score=68.97 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=21.7
Q ss_pred HHHHcCCeEEEEecCCCchhchHHHHHHH
Q 001615 292 KAVAENQVLVVSGETGCGKTTQLPQFILE 320 (1044)
Q Consensus 292 ~~i~~~~~vii~a~TGSGKTt~~p~~il~ 320 (1044)
+-+..+++++++||+|+|||+.+.-...+
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHH
Confidence 34567889999999999999665544433
No 196
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.91 E-value=0.0057 Score=76.70 Aligned_cols=124 Identities=21% Similarity=0.205 Sum_probs=80.1
Q ss_pred cCCCchHHHHHHHHHHHc-CCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 001615 279 EKLPAFKMKAEFLKAVAE-NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (1044)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~-~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~ 357 (1044)
....+.+-|.+++..+.. ++.++|+|+.|+||||.+-. +.+.+.. .+.+|++++||--+|..+.+ ..+..
T Consensus 349 ~~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~-i~~~~~~----~g~~V~~~ApTg~Aa~~L~~----~~g~~ 419 (744)
T TIGR02768 349 QHYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKA-AREAWEA----AGYRVIGAALSGKAAEGLQA----ESGIE 419 (744)
T ss_pred ccCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHH-HHHHHHh----CCCeEEEEeCcHHHHHHHHh----ccCCc
Confidence 345678999999999877 58999999999999976544 3333322 24589999999888765532 21210
Q ss_pred CCcEEEEEEeccccCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEc
Q 001615 358 LGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILM 436 (1044)
Q Consensus 358 ~g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilm 436 (1044)
-.|-..++..+..+. .+...++|||||+-. ++.+.+..+++.... ...|+|++
T Consensus 420 ----------------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEasM--v~~~~~~~Ll~~~~~--~~~kliLV 473 (744)
T TIGR02768 420 ----------------------SRTLASLEYAWANGRDLLSDKDVLVIDEAGM--VGSRQMARVLKEAEE--AGAKVVLV 473 (744)
T ss_pred ----------------------eeeHHHHHhhhccCcccCCCCcEEEEECccc--CCHHHHHHHHHHHHh--cCCEEEEE
Confidence 012222322222222 567889999999984 666666666665433 35677776
Q ss_pred c
Q 001615 437 S 437 (1044)
Q Consensus 437 S 437 (1044)
-
T Consensus 474 G 474 (744)
T TIGR02768 474 G 474 (744)
T ss_pred C
Confidence 5
No 197
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.90 E-value=0.0023 Score=72.03 Aligned_cols=70 Identities=19% Similarity=0.156 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCC
Q 001615 284 FKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGE 356 (1044)
Q Consensus 284 ~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~ 356 (1044)
++-|.+++.. .++.++|.|..|||||+.+..-++..+... .....+|||+.+|+.+|..+.+|+...++.
T Consensus 2 ~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~-~~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 2 TDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEG-GVPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp -HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTS-SSTGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccc-cCChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 4568888887 677899999999999998877666555432 234568999999999999999999886543
No 198
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=96.89 E-value=0.0025 Score=51.87 Aligned_cols=47 Identities=17% Similarity=0.381 Sum_probs=43.1
Q ss_pred HHHHhccccccceeeecccCChhhHHHHHHHHHhcCceeeeecCCCc
Q 001615 123 GKLEQMKRGEEQEMIIKRKFSRADQQTLADMAHQLGLHFHAYNKGKA 169 (1044)
Q Consensus 123 ~~l~~~~~~~~~e~~~~~~~s~~e~~~i~~~a~~~g~~~~~~~~~~~ 169 (1044)
..+++|..++..++.|+++++..+|..+|.+|.+.|+++.++|+|..
T Consensus 6 ~~i~~F~~~~~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s~S~G~g~~ 52 (59)
T cd06007 6 KALEDFRASDNEEYEFPSSLTNHERAVIHRLCRKLGLKSKSKGKGSN 52 (59)
T ss_pred HHHHHHHcCcccEEEcCCCCCHHHHHHHHHHHHHcCCCceeecCCCC
Confidence 46778998888899999999999999999999999999999988776
No 199
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.88 E-value=0.0037 Score=71.97 Aligned_cols=111 Identities=23% Similarity=0.337 Sum_probs=64.5
Q ss_pred HHHHHHHHHH------HcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHH--HHHHHHHhCC
Q 001615 285 KMKAEFLKAV------AENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISV--AARVSSERGE 356 (1044)
Q Consensus 285 ~~Q~~~i~~i------~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qv--a~rv~~~~~~ 356 (1044)
+-|+++++.+ .++..+.|.|+-|+|||+.+ ..+...-+..+..+++++||-++|..+ ..-+-..++.
T Consensus 4 ~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-----~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i 78 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-----KAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGI 78 (364)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-----HHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCc
Confidence 4566776666 67889999999999999543 322222223356899999999999877 3334343433
Q ss_pred CCCcEEEEEEeccccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHH
Q 001615 357 NLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLII 420 (1044)
Q Consensus 357 ~~g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~ 420 (1044)
.++.. .. ..+-+.....+. ..+.++++|||||+=- +..+.+..+
T Consensus 79 ~~~~~--------~~----~~~~~~~~~~~~------~~l~~~~~lIiDEism--~~~~~l~~i 122 (364)
T PF05970_consen 79 PINNN--------EK----SQCKISKNSRLR------ERLRKADVLIIDEISM--VSADMLDAI 122 (364)
T ss_pred ccccc--------cc----ccccccccchhh------hhhhhheeeecccccc--hhHHHHHHH
Confidence 32211 00 000000001111 2567899999999973 444444433
No 200
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=96.83 E-value=0.0081 Score=65.37 Aligned_cols=140 Identities=19% Similarity=0.211 Sum_probs=79.3
Q ss_pred CCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCCc
Q 001615 297 NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQT 376 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~~ 376 (1044)
..-.++-=.||.||--++.-.|++..+. | ..+.|.+...-.|-....+.++..-...+-...-..........-..
T Consensus 62 R~Gf~lGDGtGvGKGR~iAgiI~~n~l~---G-r~r~vwvS~s~dL~~Da~RDl~DIG~~~i~v~~l~~~~~~~~~~~~~ 137 (303)
T PF13872_consen 62 RAGFFLGDGTGVGKGRQIAGIILENWLR---G-RKRAVWVSVSNDLKYDAERDLRDIGADNIPVHPLNKFKYGDIIRLKE 137 (303)
T ss_pred CcEEEeccCCCcCccchhHHHHHHHHHc---C-CCceEEEECChhhhhHHHHHHHHhCCCcccceechhhccCcCCCCCC
Confidence 3445566689999999999999998764 2 23567777777777665555654322211110001111111112234
Q ss_pred cEEEEchHHHHHHHhcCC----CC---------CccceEEechhhhc-cchhH-----HHHHHHHHHcccCCcccEEEcc
Q 001615 377 RLLFCTTGVLLRQLVEDP----DL---------SCVSHLLVDEIHER-GMNED-----FLLIILRDLLPRRPDLRLILMS 437 (1044)
Q Consensus 377 ~I~v~T~g~Ll~~l~~~~----~L---------~~~~~lIiDEaHeR-~~~~d-----~ll~~lk~~~~~~~~~qiilmS 437 (1044)
.|+|+|.-.|...-.... .| +-=.+||+||||+- +...+ -.-.....+...-|+.++|-+|
T Consensus 138 GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~S 217 (303)
T PF13872_consen 138 GVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYAS 217 (303)
T ss_pred CccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEec
Confidence 599999887776643211 11 11248999999952 11110 0111222344456788999999
Q ss_pred cCC
Q 001615 438 ATI 440 (1044)
Q Consensus 438 ATl 440 (1044)
||-
T Consensus 218 ATg 220 (303)
T PF13872_consen 218 ATG 220 (303)
T ss_pred ccc
Confidence 995
No 201
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.82 E-value=0.0082 Score=68.75 Aligned_cols=128 Identities=20% Similarity=0.246 Sum_probs=74.7
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCC
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQ 375 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~ 375 (1044)
.+.+++++||||+||||.+..++...... .+....++-.-+.|..+.....+.++..+..+
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~--~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~----------------- 282 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLH--MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPF----------------- 282 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh--cCCeEEEecccchhhhHHHHHHHHHHhcCCCe-----------------
Confidence 35678899999999999999888765433 22233344445778888776666665544321
Q ss_pred ccEEEEchHHHHHHHhcCCCCCccceEEechhhhccc-hhHHHHHHHHHHcc----cCCcccEEEcccCCChHH---HHh
Q 001615 376 TRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGM-NEDFLLIILRDLLP----RRPDLRLILMSATINADL---FSK 447 (1044)
Q Consensus 376 ~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~-~~d~ll~~lk~~~~----~~~~~qiilmSATl~~~~---~~~ 447 (1044)
+.+.....+...+.. .++++||||=+- |.. +.+-+.. ++.++. ..+.-.++++|||...+. +.+
T Consensus 283 --~~~~~~~~l~~~l~~----~~~D~VLIDTaG-r~~rd~~~l~e-L~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~ 354 (432)
T PRK12724 283 --YPVKDIKKFKETLAR----DGSELILIDTAG-YSHRNLEQLER-MQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK 354 (432)
T ss_pred --eehHHHHHHHHHHHh----CCCCEEEEeCCC-CCccCHHHHHH-HHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH
Confidence 001113344444431 578999999776 432 2332222 232222 224457888999996653 444
Q ss_pred hhC
Q 001615 448 YFG 450 (1044)
Q Consensus 448 ~f~ 450 (1044)
+|.
T Consensus 355 ~f~ 357 (432)
T PRK12724 355 AYE 357 (432)
T ss_pred Hhc
Confidence 453
No 202
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.81 E-value=0.023 Score=66.82 Aligned_cols=127 Identities=21% Similarity=0.233 Sum_probs=67.1
Q ss_pred HHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCC
Q 001615 294 VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRS 373 (1044)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~ 373 (1044)
+..+++++++|+||+||||.+..+....... ..+....++-+-+.|..+......... ..|..+ .
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~-~~gkkVaLIdtDtyRigA~EQLk~ya~----iLgv~v----~------ 411 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQ-HAPRDVALVTTDTQRVGGREQLHSYGR----QLGIAV----H------ 411 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCceEEEecccccccHHHHHHHhhc----ccCcee----E------
Confidence 3468899999999999998876665543322 111122223333557655433322222 222111 0
Q ss_pred CCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccCCChHH
Q 001615 374 AQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINADL 444 (1044)
Q Consensus 374 ~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSATl~~~~ 444 (1044)
...+++.|...+.. +.++++||||.+- ++.....+...+..+........+++++++.....
T Consensus 412 -----~a~d~~~L~~aL~~---l~~~DLVLIDTaG-~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~D 473 (559)
T PRK12727 412 -----EADSAESLLDLLER---LRDYKLVLIDTAG-MGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSD 473 (559)
T ss_pred -----ecCcHHHHHHHHHH---hccCCEEEecCCC-cchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhH
Confidence 01234455555542 4578999999997 43222222222222222233457888899875544
No 203
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.80 E-value=0.0014 Score=66.46 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=73.8
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeec--ccccccCCCC
Q 001615 552 EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATN--IAESSITIDD 629 (1044)
Q Consensus 552 ~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTn--iae~GidIp~ 629 (1044)
..+|.+|||+|+.+..+.+.+.+...... .++.++.- ...+...+++.|+.+.-.|++|+. ....|||+++
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~---~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEE---KGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E----ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhccc---ccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 34589999999999999999988753211 12223222 245677788889999999999998 9999999996
Q ss_pred --eEEEEeCCCCcceecccccccc------------ccccccccHhhHHHhcccCCCCCCcEEE
Q 001615 630 --VVYVVDCGKAKETSYDALNKLA------------CLLPSWISKASAHQRRGRAGRVQPGVCY 679 (1044)
Q Consensus 630 --V~~VId~g~~k~~~yd~~~~~~------------~l~~~~iS~a~~~QR~GRAGR~~~G~c~ 679 (1044)
++.||-.|+|--...|+..... .....+-.--...|-+||+=|...-.+.
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~ 143 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGV 143 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEE
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEE
Confidence 8899999999654444431110 0111122234577889999999554433
No 204
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.77 E-value=0.12 Score=66.37 Aligned_cols=126 Identities=17% Similarity=0.180 Sum_probs=82.3
Q ss_pred cCCCchHHHHHHHHHHH-cCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 001615 279 EKLPAFKMKAEFLKAVA-ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (1044)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~-~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~ 357 (1044)
....+.+-|.+++..+. .++.++|+|..|+||||.+-. +.+.+.. .+.+|+.++||--+|..+. +..+..
T Consensus 378 ~~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~-~~~~~e~----~G~~V~g~ApTgkAA~~L~----e~~Gi~ 448 (1102)
T PRK13826 378 RHARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKA-AREAWEA----AGYRVVGGALAGKAAEGLE----KEAGIQ 448 (1102)
T ss_pred cCCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHH-HHHHHHH----cCCeEEEEcCcHHHHHHHH----HhhCCC
Confidence 35678999999999875 578999999999999976544 3333222 2458999999988876553 332321
Q ss_pred CCcEEEEEEeccccCCCCccEEEEchHHH-HHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEc
Q 001615 358 LGETVGYQIRLESKRSAQTRLLFCTTGVL-LRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILM 436 (1044)
Q Consensus 358 ~g~~vgy~ir~~~~~~~~~~I~v~T~g~L-l~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilm 436 (1044)
-.|-..+ ++.-.....+..-++|||||+.. +++..+..+++.+.. ...|+|++
T Consensus 449 ----------------------a~TIas~ll~~~~~~~~l~~~~vlVIDEAsM--v~~~~m~~Ll~~~~~--~garvVLV 502 (1102)
T PRK13826 449 ----------------------SRTLSSWELRWNQGRDQLDNKTVFVLDEAGM--VASRQMALFVEAVTR--AGAKLVLV 502 (1102)
T ss_pred ----------------------eeeHHHHHhhhccCccCCCCCcEEEEECccc--CCHHHHHHHHHHHHh--cCCEEEEE
Confidence 0122222 12111122567778999999993 777777777766532 35688877
Q ss_pred ccC
Q 001615 437 SAT 439 (1044)
Q Consensus 437 SAT 439 (1044)
-=+
T Consensus 503 GD~ 505 (1102)
T PRK13826 503 GDP 505 (1102)
T ss_pred CCH
Confidence 644
No 205
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.77 E-value=0.041 Score=67.84 Aligned_cols=125 Identities=24% Similarity=0.225 Sum_probs=77.8
Q ss_pred CCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEc-ccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCC
Q 001615 297 NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQ-PRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQ 375 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~-P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~ 375 (1044)
+++++++||||+||||.+.......... .+.....+++. +.|+.+...-+..++.++..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~--~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv----------------- 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAR--EGADQLALLTTDSFRIGALEQLRIYGRILGVPV----------------- 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHH--cCCCeEEEecCcccchHHHHHHHHHHHhCCCCc-----------------
Confidence 6789999999999999887766543322 22112234444 457666555555555544321
Q ss_pred ccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHc-ccCCcccEEEcccCCChHHHH
Q 001615 376 TRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLL-PRRPDLRLILMSATINADLFS 446 (1044)
Q Consensus 376 ~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~-~~~~~~qiilmSATl~~~~~~ 446 (1044)
.++.+|.-+.+.+. .+.++++|+||=+= |+....-+...++.+. ...|.-.++++|||...+.+.
T Consensus 246 --~~~~~~~~l~~al~---~~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 246 --HAVKDAADLRFALA---ALGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred --cccCCHHHHHHHHH---HhcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 11236777766664 35678999999998 6543333555555544 345667888999998766544
No 206
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=96.73 E-value=0.004 Score=50.90 Aligned_cols=48 Identities=17% Similarity=0.449 Sum_probs=43.3
Q ss_pred HHHHHhccccc-cceeeecccCChhhHHHHHHHHHhcCceeeeecCCCc
Q 001615 122 WGKLEQMKRGE-EQEMIIKRKFSRADQQTLADMAHQLGLHFHAYNKGKA 169 (1044)
Q Consensus 122 ~~~l~~~~~~~-~~e~~~~~~~s~~e~~~i~~~a~~~g~~~~~~~~~~~ 169 (1044)
...+++|..++ ..++.|+++++..+|..+|.+|+++|+++.++|.|..
T Consensus 5 ~~~i~~F~~s~~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~S~G~g~~ 53 (60)
T cd02640 5 RQIIQNYAHSDDIRDMVFSPEFSKEERALIHQIAQKYGLKSRSYGSGND 53 (60)
T ss_pred HHHHHHHHcCCccceEEcCCCCCHHHHHHHHHHHHHcCCceeeEeCCCC
Confidence 45678898887 7899999999999999999999999999999987776
No 207
>PRK08181 transposase; Validated
Probab=96.67 E-value=0.0073 Score=65.96 Aligned_cols=115 Identities=15% Similarity=0.185 Sum_probs=61.0
Q ss_pred HHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccC
Q 001615 293 AVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKR 372 (1044)
Q Consensus 293 ~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~ 372 (1044)
-+..+++++++||+|+|||..+..+ ...+..+ +..++++ +..+|..++. ....
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Ai-a~~a~~~----g~~v~f~-~~~~L~~~l~----~a~~----------------- 154 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAI-GLALIEN----GWRVLFT-RTTDLVQKLQ----VARR----------------- 154 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHH-HHHHHHc----CCceeee-eHHHHHHHHH----HHHh-----------------
Confidence 3457889999999999999544333 3333322 2345554 3334444332 1100
Q ss_pred CCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccch---hHHHHHHHHHHcccCCcccEEEcccCCChHHHHhhh
Q 001615 373 SAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMN---EDFLLIILRDLLPRRPDLRLILMSATINADLFSKYF 449 (1044)
Q Consensus 373 ~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~---~d~ll~~lk~~~~~~~~~qiilmSATl~~~~~~~~f 449 (1044)
. .+...+++. +.++++|||||++-...+ .+.+..++..... . +-++++.-++...+...|
T Consensus 155 --~-----~~~~~~l~~------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~---~-~s~IiTSN~~~~~w~~~~ 217 (269)
T PRK08181 155 --E-----LQLESAIAK------LDKFDLLILDDLAYVTKDQAETSVLFELISARYE---R-RSILITANQPFGEWNRVF 217 (269)
T ss_pred --C-----CcHHHHHHH------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHh---C-CCEEEEcCCCHHHHHHhc
Confidence 0 012223333 357889999999843222 2234444432222 2 345566666777777666
Q ss_pred CC
Q 001615 450 GN 451 (1044)
Q Consensus 450 ~~ 451 (1044)
++
T Consensus 218 ~D 219 (269)
T PRK08181 218 PD 219 (269)
T ss_pred CC
Confidence 54
No 208
>PRK14974 cell division protein FtsY; Provisional
Probab=96.62 E-value=0.0092 Score=67.20 Aligned_cols=124 Identities=19% Similarity=0.237 Sum_probs=68.4
Q ss_pred CCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEc--ccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCC
Q 001615 297 NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQ--PRRISAISVAARVSSERGENLGETVGYQIRLESKRSA 374 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~--P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~ 374 (1044)
...++++|++|+||||.+..+... +.. .+ .+|+++. +.|..|....+..+..++..+-. + ..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~-l~~--~g--~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~--~-------~~-- 203 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYY-LKK--NG--FSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK--H-------KY-- 203 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH-HHH--cC--CeEEEecCCcCcHHHHHHHHHHHHHcCCceec--c-------cC--
Confidence 468999999999999977766532 222 22 2444333 34566654445555555533210 0 00
Q ss_pred CccEEEEch-HHHHHHHhcCCCCCccceEEechhhhccc-hhHHHHHHHHHHcccCCcccEEEcccCCChH
Q 001615 375 QTRLLFCTT-GVLLRQLVEDPDLSCVSHLLVDEIHERGM-NEDFLLIILRDLLPRRPDLRLILMSATINAD 443 (1044)
Q Consensus 375 ~~~I~v~T~-g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~-~~d~ll~~lk~~~~~~~~~qiilmSATl~~~ 443 (1044)
+. .| .++.+.+..- ...++++||||.++ |.. +.+++..+-+......|+..+++++||...+
T Consensus 204 g~-----dp~~v~~~ai~~~-~~~~~DvVLIDTaG-r~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d 267 (336)
T PRK14974 204 GA-----DPAAVAYDAIEHA-KARGIDVVLIDTAG-RMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND 267 (336)
T ss_pred CC-----CHHHHHHHHHHHH-HhCCCCEEEEECCC-ccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh
Confidence 00 11 1122222211 12467899999999 543 4555544433333356788899999998544
No 209
>PRK04296 thymidine kinase; Provisional
Probab=96.60 E-value=0.0097 Score=61.81 Aligned_cols=98 Identities=17% Similarity=0.237 Sum_probs=54.9
Q ss_pred CCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEccc---HHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCC
Q 001615 297 NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPR---RISAISVAARVSSERGENLGETVGYQIRLESKRS 373 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~---r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~ 373 (1044)
+..++++|++|+||||.+...+...... +.+++++-|. |.....+ .+.++..+
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~-----g~~v~i~k~~~d~~~~~~~i----~~~lg~~~--------------- 57 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEER-----GMKVLVFKPAIDDRYGEGKV----VSRIGLSR--------------- 57 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHc-----CCeEEEEeccccccccCCcE----ecCCCCcc---------------
Confidence 4678999999999999988887765422 3467776552 2221111 11111100
Q ss_pred CCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHH
Q 001615 374 AQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDL 424 (1044)
Q Consensus 374 ~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~ 424 (1044)
..+.+....-+++.+.. .-.++++|||||+| + +..+-+..+++.+
T Consensus 58 --~~~~~~~~~~~~~~~~~--~~~~~dvviIDEaq-~-l~~~~v~~l~~~l 102 (190)
T PRK04296 58 --EAIPVSSDTDIFELIEE--EGEKIDCVLIDEAQ-F-LDKEQVVQLAEVL 102 (190)
T ss_pred --cceEeCChHHHHHHHHh--hCCCCCEEEEEccc-c-CCHHHHHHHHHHH
Confidence 00223344555655544 23478999999998 3 3344344455543
No 210
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.57 E-value=0.056 Score=64.90 Aligned_cols=141 Identities=18% Similarity=0.192 Sum_probs=90.1
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCC--------CCCcEEEE---
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGE--------NLGETVGY--- 364 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~--------~~g~~vgy--- 364 (1044)
+.+-.++.+|=|.|||+.+-+.+.-.+.. . +.+|++++|+..-+.++.+++...+.. ..+..+..
T Consensus 186 kq~~tV~taPRqrGKS~iVgi~l~~La~f--~--Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~vkgg 261 (752)
T PHA03333 186 GKCYTAATVPRRCGKTTIMAIILAAMISF--L--EIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVTLKGT 261 (752)
T ss_pred hhcceEEEeccCCCcHHHHHHHHHHHHHh--c--CCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEEeeCC
Confidence 45668889999999998887666644321 1 358999999999999999887766541 11111211
Q ss_pred --EEeccccC--C-CCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEccc
Q 001615 365 --QIRLESKR--S-AQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSA 438 (1044)
Q Consensus 365 --~ir~~~~~--~-~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSA 438 (1044)
.+++.... . ..+.|.|++.. .+. .-.++++||||||+. +..+.+..++-.+.. .+-++|++|.
T Consensus 262 ~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAf--I~~~~l~aIlP~l~~--~~~k~IiISS 330 (752)
T PHA03333 262 DENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAF--VNPGALLSVLPLMAV--KGTKQIHISS 330 (752)
T ss_pred eeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECccc--CCHHHHHHHHHHHcc--CCCceEEEeC
Confidence 11221111 1 11556665543 111 113578999999996 555666666555544 2578889999
Q ss_pred CCChHHHHhhhCC
Q 001615 439 TINADLFSKYFGN 451 (1044)
Q Consensus 439 Tl~~~~~~~~f~~ 451 (1044)
+-+.+.+..++.+
T Consensus 331 ~~~~~s~tS~L~n 343 (752)
T PHA03333 331 PVDADSWISRVGE 343 (752)
T ss_pred CCCcchHHHHhhh
Confidence 9888877776654
No 211
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.52 E-value=0.006 Score=75.01 Aligned_cols=66 Identities=18% Similarity=0.295 Sum_probs=53.9
Q ss_pred CchHHHHHHHHHHHcC-CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHH
Q 001615 282 PAFKMKAEFLKAVAEN-QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSS 352 (1044)
Q Consensus 282 pi~~~Q~~~i~~i~~~-~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~ 352 (1044)
.+...|.+++..+..+ ..++|.||+|+|||+.+...+.+.. .. +.+|+|+.||..++.++.+++.+
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~-~~----g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV-KR----GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH-Hc----CCCEEEEcCcHHHHHHHHHHHHh
Confidence 4567899999988876 7899999999999987776665543 22 34899999999999999999865
No 212
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.48 E-value=0.022 Score=65.98 Aligned_cols=128 Identities=19% Similarity=0.186 Sum_probs=75.1
Q ss_pred HcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCC
Q 001615 295 AENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSA 374 (1044)
Q Consensus 295 ~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~ 374 (1044)
..++.+.++|+||+||||.+...........+ .....++..-..|..+.+.....++.++..+
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~-~~~v~~i~~d~~rigalEQL~~~a~ilGvp~---------------- 251 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHG-ADKVALLTTDSYRIGGHEQLRIYGKLLGVSV---------------- 251 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEecCCcchhHHHHHHHHHHHcCCce----------------
Confidence 46789999999999999988766554332221 1223344444557777766666666554321
Q ss_pred CccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccC-CcccEEEcccCCChHHHH
Q 001615 375 QTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRR-PDLRLILMSATINADLFS 446 (1044)
Q Consensus 375 ~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~-~~~qiilmSATl~~~~~~ 446 (1044)
..+-++.-+...+. .+.+.++++||.+= |.-....+...++.+.... +.-.++++|||...+.+.
T Consensus 252 ---~~v~~~~dl~~al~---~l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~ 317 (420)
T PRK14721 252 ---RSIKDIADLQLMLH---ELRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD 317 (420)
T ss_pred ---ecCCCHHHHHHHHH---HhcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH
Confidence 01112222333232 25678999999986 4443333445555554432 445678899998766544
No 213
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.37 E-value=0.0077 Score=70.29 Aligned_cols=66 Identities=15% Similarity=0.259 Sum_probs=55.0
Q ss_pred chHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHH
Q 001615 283 AFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSS 352 (1044)
Q Consensus 283 i~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~ 352 (1044)
+..-|..++.+++++...+|+||+|+|||....-.+++.+-. ...+|||.+|..+++.|+|+.+.+
T Consensus 411 LN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~----~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 411 LNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ----HAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred hchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh----cCCceEEEcccchhHHHHHHHHHh
Confidence 457899999999999999999999999997666666554422 245899999999999999998865
No 214
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.30 E-value=0.029 Score=61.26 Aligned_cols=124 Identities=19% Similarity=0.288 Sum_probs=67.5
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHH-HHHHHHHHHhCCCCCcEEEEEEeccccCCC
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAI-SVAARVSSERGENLGETVGYQIRLESKRSA 374 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~-qva~rv~~~~~~~~g~~vgy~ir~~~~~~~ 374 (1044)
.++.++++|++|+||||.+....... .. .+...-++.+-+.|+.+. |+.. .+... + +
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l-~~--~~~~v~~i~~D~~ri~~~~ql~~-~~~~~----~----~---------- 131 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF-HG--KKKTVGFITTDHSRIGTVQQLQD-YVKTI----G----F---------- 131 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH-HH--cCCeEEEEecCCCCHHHHHHHHH-Hhhhc----C----c----------
Confidence 45799999999999998776654432 21 222222333335554433 3322 22211 1 1
Q ss_pred CccEEE-EchHHHHHHHhcCCCCCccceEEechhhhccc-hhHHHHHHHHHHcccCCcccEEEcccCCChHH
Q 001615 375 QTRLLF-CTTGVLLRQLVEDPDLSCVSHLLVDEIHERGM-NEDFLLIILRDLLPRRPDLRLILMSATINADL 444 (1044)
Q Consensus 375 ~~~I~v-~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~-~~d~ll~~lk~~~~~~~~~qiilmSATl~~~~ 444 (1044)
.+.. .++.-+.+.+..-....++++||||.+= |.. +.+.+..+.+.+....|+..++.+|||...+.
T Consensus 132 --~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~G-r~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d 200 (270)
T PRK06731 132 --EVIAVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 200 (270)
T ss_pred --eEEecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHH
Confidence 1111 2455554444321123468999999997 543 44444444444334456667788999986543
No 215
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.28 E-value=0.28 Score=58.35 Aligned_cols=122 Identities=14% Similarity=0.194 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhccCCCCEEEEeCCHHHHHHH-HHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCC---CCcEEE
Q 001615 540 LVESTIEYICRHEGDGAILVFLTGWNDISKL-LDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPP---NKRKIV 615 (1044)
Q Consensus 540 li~~~l~~i~~~~~~g~iLVFl~~~~~i~~l-~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~---g~~kIl 615 (1044)
.+.+.+..+. .... .-+|-+.-|..+-.+ ...|.. .++....+||.+...+|+.+++.|.. |.+-.|
T Consensus 733 ~~l~~le~i~-~~sk-eK~viVSQwtsvLniv~~hi~~-------~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmL 803 (901)
T KOG4439|consen 733 MVLEILETIL-TSSK-EKVVIVSQWTSVLNIVRKHIQK-------GGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVML 803 (901)
T ss_pred HHHHHHHHHh-hccc-ceeeehhHHHHHHHHHHHHHhh-------CCeeeeeecCccchhHHHHHHHHHHhccCCceEEE
Confidence 3444455553 2222 235556666655443 334444 56778889999999999999988843 356667
Q ss_pred EeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCCCCcEEEEecChh
Q 001615 616 LATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRI 685 (1044)
Q Consensus 616 vaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~~G~c~~L~t~~ 685 (1044)
++=....-||++-+-+|+|-.|+.-+.. =-.++--|+=|-|-..+=..|||.-+.
T Consensus 804 lSLtAGGVGLNL~GaNHlilvDlHWNPa---------------LEqQAcDRIYR~GQkK~V~IhR~~~~g 858 (901)
T KOG4439|consen 804 LSLTAGGVGLNLIGANHLILVDLHWNPA---------------LEQQACDRIYRMGQKKDVFIHRLMCKG 858 (901)
T ss_pred EEEccCcceeeecccceEEEEecccCHH---------------HHHHHHHHHHHhcccCceEEEEEEecC
Confidence 7778888999999999999888765332 122566778888887888888887654
No 216
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.12 E-value=0.02 Score=64.57 Aligned_cols=115 Identities=19% Similarity=0.211 Sum_probs=57.6
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCC
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQ 375 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~ 375 (1044)
.++.+++.|+||+|||+.+ ..|...++.. +..|+++ +...+...+.. ... +..
T Consensus 182 ~~~~Lll~G~~GtGKThLa-~aIa~~l~~~----g~~V~y~-t~~~l~~~l~~----~~~-------------~~~---- 234 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS-NCIAKELLDR----GKSVIYR-TADELIEILRE----IRF-------------NND---- 234 (329)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHHC----CCeEEEE-EHHHHHHHHHH----HHh-------------ccc----
Confidence 4688999999999999633 3444444432 2355554 33344333321 100 000
Q ss_pred ccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccC-CcccEEEcccCCChHHHHhhh
Q 001615 376 TRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRR-PDLRLILMSATINADLFSKYF 449 (1044)
Q Consensus 376 ~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~-~~~qiilmSATl~~~~~~~~f 449 (1044)
. -... .++ .+.++++||||+++. ...+++....+-.++..+ ..-+-+++|..++.+.+.+.+
T Consensus 235 ~----~~~~-~~~------~l~~~DLLIIDDlG~-e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~ 297 (329)
T PRK06835 235 K----ELEE-VYD------LLINCDLLIIDDLGT-EKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTY 297 (329)
T ss_pred h----hHHH-HHH------HhccCCEEEEeccCC-CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence 0 0000 122 245789999999983 233444333333333322 112345666666666655544
No 217
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.06 E-value=0.052 Score=58.46 Aligned_cols=115 Identities=22% Similarity=0.303 Sum_probs=64.4
Q ss_pred CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCCcc
Q 001615 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTR 377 (1044)
Q Consensus 298 ~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~~~ 377 (1044)
..+++.|++|+|||+.+...+ ..+... +..++++ +...+ ..++...+.. . .
T Consensus 100 ~~~~l~G~~GtGKThLa~aia-~~l~~~----g~~v~~i-t~~~l----~~~l~~~~~~-------------~----~-- 150 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAIC-NELLLR----GKSVLII-TVADI----MSAMKDTFSN-------------S----E-- 150 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHH-HHHHhc----CCeEEEE-EHHHH----HHHHHHHHhh-------------c----c--
Confidence 579999999999996554433 333332 2355554 22222 2233222100 0 0
Q ss_pred EEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccC-CcccEEEcccCCChHHHHhhhCC
Q 001615 378 LLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRR-PDLRLILMSATINADLFSKYFGN 451 (1044)
Q Consensus 378 I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~-~~~qiilmSATl~~~~~~~~f~~ 451 (1044)
.+...+++. +.++++|||||++.- ..+++...++-.++..| .+.+-+++|.-++.+.+.+++++
T Consensus 151 ---~~~~~~l~~------l~~~dlLvIDDig~~-~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g~ 215 (244)
T PRK07952 151 ---TSEEQLLND------LSNVDLLVIDEIGVQ-TESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGE 215 (244)
T ss_pred ---ccHHHHHHH------hccCCEEEEeCCCCC-CCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhCh
Confidence 123344443 357899999999943 25666555555554432 23455666667777777777754
No 218
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.01 E-value=0.04 Score=67.20 Aligned_cols=50 Identities=24% Similarity=0.402 Sum_probs=29.6
Q ss_pred HHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcc
Q 001615 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (1044)
Q Consensus 386 Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmS 437 (1044)
+++.+...+.-.+++++||||+|. +..+-.-.+||.+....+..++|+.+
T Consensus 107 LIe~a~~~P~~gr~KVIIIDEah~--LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 107 LLERAVYAPVDARFKVYMIDEVHM--LTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred HHHHHHhccccCCceEEEEeChhh--CCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 334433344446789999999995 44444556677655444445555433
No 219
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.96 E-value=0.11 Score=57.61 Aligned_cols=89 Identities=24% Similarity=0.254 Sum_probs=52.1
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCC
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQ 375 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~ 375 (1044)
.+++++++||||+||||.+..++.......+ +....++-+-|.|..+.......+..++..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g-~~~V~li~~D~~r~~a~eql~~~~~~~~~p~----------------- 254 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHG-NKKVALITTDTYRIGAVEQLKTYAKILGVPV----------------- 254 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcC-CCeEEEEECCccchhHHHHHHHHHHHhCCce-----------------
Confidence 3568999999999999988776655433211 1233444445667666555444444433221
Q ss_pred ccEEEEchHHHHHHHhcCCCCCccceEEechh
Q 001615 376 TRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEI 407 (1044)
Q Consensus 376 ~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEa 407 (1044)
....++.-+.+.+. .+.++++||||.+
T Consensus 255 --~~~~~~~~l~~~l~---~~~~~d~vliDt~ 281 (282)
T TIGR03499 255 --KVARDPKELRKALD---RLRDKDLILIDTA 281 (282)
T ss_pred --eccCCHHHHHHHHH---HccCCCEEEEeCC
Confidence 01124455555554 2356899999975
No 220
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.96 E-value=0.0083 Score=61.51 Aligned_cols=119 Identities=15% Similarity=0.251 Sum_probs=53.7
Q ss_pred HHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEecccc
Q 001615 292 KAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESK 371 (1044)
Q Consensus 292 ~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~ 371 (1044)
+.+.+++++++.|+||+|||..+.-.+.+ +... +..++++ +...|...+. .... .
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa~ai~~~-~~~~----g~~v~f~-~~~~L~~~l~----~~~~--------------~- 96 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLAVAIANE-AIRK----GYSVLFI-TASDLLDELK----QSRS--------------D- 96 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHHHHHHHH-HHHT----T--EEEE-EHHHHHHHHH----CCHC--------------C-
T ss_pred CCcccCeEEEEEhhHhHHHHHHHHHHHHH-hccC----CcceeEe-ecCceecccc----cccc--------------c-
Confidence 33457889999999999999655444333 3332 2345554 4444443332 1000 0
Q ss_pred CCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcc-cCCcccEEEcccCCChHHHHhhhC
Q 001615 372 RSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP-RRPDLRLILMSATINADLFSKYFG 450 (1044)
Q Consensus 372 ~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~-~~~~~qiilmSATl~~~~~~~~f~ 450 (1044)
+ +.+.+++.+ .++++|||||+---. .++.....+-.++. +.....+| ++.=++.+.+.+.|+
T Consensus 97 ---~------~~~~~~~~l------~~~dlLilDDlG~~~-~~~~~~~~l~~ii~~R~~~~~tI-iTSN~~~~~l~~~~~ 159 (178)
T PF01695_consen 97 ---G------SYEELLKRL------KRVDLLILDDLGYEP-LSEWEAELLFEIIDERYERKPTI-ITSNLSPSELEEVLG 159 (178)
T ss_dssp ---T------THCHHHHHH------HTSSCEEEETCTSS----HHHHHCTHHHHHHHHHT-EEE-EEESS-HHHHHT---
T ss_pred ---c------chhhhcCcc------ccccEecccccceee-ecccccccchhhhhHhhcccCeE-eeCCCchhhHhhccc
Confidence 0 112234444 478999999987321 22222222222222 21222344 455578888888887
Q ss_pred CC
Q 001615 451 NA 452 (1044)
Q Consensus 451 ~~ 452 (1044)
+.
T Consensus 160 d~ 161 (178)
T PF01695_consen 160 DR 161 (178)
T ss_dssp --
T ss_pred cc
Confidence 53
No 221
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.94 E-value=0.021 Score=70.92 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=29.0
Q ss_pred CCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEc
Q 001615 393 DPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILM 436 (1044)
Q Consensus 393 ~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilm 436 (1044)
.+.-.++.++||||||. +..+-.-.+||.+..-.+..++|+.
T Consensus 114 ~P~~gk~KViIIDEAh~--LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 114 RPSRGRFKVYLIDEVHM--LSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred hhhcCCcEEEEEechHh--cCHHHHHHHHHHHhccCCCeEEEEE
Confidence 34346789999999995 4566667777777655455666664
No 222
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.93 E-value=0.044 Score=62.00 Aligned_cols=144 Identities=17% Similarity=0.197 Sum_probs=90.0
Q ss_pred CCCchHHHHHHHHHHHcCCe-----EEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHh
Q 001615 280 KLPAFKMKAEFLKAVAENQV-----LVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSER 354 (1044)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~~~-----vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~ 354 (1044)
.+|+-++|.+.+..+..... -|+.-+-|-|||.|..-.+|... . ....||++|+.++ .|..+.+....
T Consensus 182 ii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~----~--ra~tLVvaP~VAl-mQW~nEI~~~T 254 (791)
T KOG1002|consen 182 IIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV----D--RAPTLVVAPTVAL-MQWKNEIERHT 254 (791)
T ss_pred eecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc----c--cCCeeEEccHHHH-HHHHHHHHHhc
Confidence 36888899999877654332 46677899999998887777643 1 2358888998775 56777777665
Q ss_pred CCCCCcEEEEEEeccccC-----CCCccEEEEchHHHHHHHhcC-------------C-CCCc--cceEEechhh---hc
Q 001615 355 GENLGETVGYQIRLESKR-----SAQTRLLFCTTGVLLRQLVED-------------P-DLSC--VSHLLVDEIH---ER 410 (1044)
Q Consensus 355 ~~~~g~~vgy~ir~~~~~-----~~~~~I~v~T~g~Ll~~l~~~-------------~-~L~~--~~~lIiDEaH---eR 410 (1044)
. |..--|......+. ..+.+++.+|..++-...+.. + .|.+ +--||+|||| +|
T Consensus 255 ~---gslkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R 331 (791)
T KOG1002|consen 255 S---GSLKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDR 331 (791)
T ss_pred c---CceEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccc
Confidence 4 44333332222211 237889999998887766541 1 2333 3459999999 35
Q ss_pred cchhHHHHHHHHHHcccCCcccEEEcccCC
Q 001615 411 GMNEDFLLIILRDLLPRRPDLRLILMSATI 440 (1044)
Q Consensus 411 ~~~~d~ll~~lk~~~~~~~~~qiilmSATl 440 (1044)
.-++--..--|+ .-+-..+|.|.
T Consensus 332 ~snTArAV~~L~-------tt~rw~LSGTP 354 (791)
T KOG1002|consen 332 QSNTARAVFALE-------TTYRWCLSGTP 354 (791)
T ss_pred cccHHHHHHhhH-------hhhhhhccCCc
Confidence 555532211111 12335678886
No 223
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.93 E-value=0.0018 Score=65.62 Aligned_cols=117 Identities=22% Similarity=0.271 Sum_probs=55.4
Q ss_pred EEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEecc-------ccCC
Q 001615 301 VVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLE-------SKRS 373 (1044)
Q Consensus 301 ii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~-------~~~~ 373 (1044)
||+|+-|.|||+++-+.+...... ...+|+|++|+.+.+..+.+.+...+. ..||..... ....
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~----~~~~I~vtAP~~~~~~~lf~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~ 71 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK----GKIRILVTAPSPENVQTLFEFAEKGLK-----ALGYKEEKKKRIGQIIKLRF 71 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------EEEE-SS--S-HHHHHCC------------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh----cCceEEEecCCHHHHHHHHHHHHhhcc-----cccccccccccccccccccc
Confidence 689999999998776655433211 125899999999999888765544332 122221100 0112
Q ss_pred CCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccCCC
Q 001615 374 AQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATIN 441 (1044)
Q Consensus 374 ~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSATl~ 441 (1044)
.+..|.|..|.-+...- ...++||||||=- +...++. .++... ..++||.|+.
T Consensus 72 ~~~~i~f~~Pd~l~~~~------~~~DlliVDEAAa--Ip~p~L~----~ll~~~---~~vv~stTi~ 124 (177)
T PF05127_consen 72 NKQRIEFVAPDELLAEK------PQADLLIVDEAAA--IPLPLLK----QLLRRF---PRVVFSTTIH 124 (177)
T ss_dssp -CCC--B--HHHHCCT----------SCEEECTGGG--S-HHHHH----HHHCCS---SEEEEEEEBS
T ss_pred ccceEEEECCHHHHhCc------CCCCEEEEechhc--CCHHHHH----HHHhhC---CEEEEEeecc
Confidence 25678899987765432 2458999999984 4444443 444333 4667888874
No 224
>PF13173 AAA_14: AAA domain
Probab=95.92 E-value=0.025 Score=54.65 Aligned_cols=26 Identities=31% Similarity=0.588 Sum_probs=21.6
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHH
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEE 321 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~ 321 (1044)
+++.++|.||.|+||||.+-+++-+.
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999999998887776554
No 225
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.85 E-value=0.082 Score=62.24 Aligned_cols=127 Identities=20% Similarity=0.219 Sum_probs=70.5
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCC
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQ 375 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~ 375 (1044)
.++++.++||||+||||.+...........+. ...-++-.-+-|+.|.+.....++.++..+. +
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~--~------------- 318 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-SKVALLTTDSYRIGGHEQLRIYGKILGVPVH--A------------- 318 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-CeEEEEeCCccchhHHHHHHHHHHHhCCCee--c-------------
Confidence 57899999999999999888776544333211 1222333345677777666666666553210 0
Q ss_pred ccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHccc-CCcccEEEcccCCChHHHH
Q 001615 376 TRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPR-RPDLRLILMSATINADLFS 446 (1044)
Q Consensus 376 ~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~-~~~~qiilmSATl~~~~~~ 446 (1044)
+-++.-+...+ ..+.+..+++||.+= |+.....+...+..+... .|.-.++.++||.....+.
T Consensus 319 ----~~~~~Dl~~aL---~~L~d~d~VLIDTaG-r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~ 382 (484)
T PRK06995 319 ----VKDAADLRLAL---SELRNKHIVLIDTIG-MSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLN 382 (484)
T ss_pred ----cCCchhHHHHH---HhccCCCeEEeCCCC-cChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHH
Confidence 00111111122 245677899999986 443222222333333222 1334678899998766433
No 226
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.82 E-value=0.053 Score=61.79 Aligned_cols=140 Identities=18% Similarity=0.160 Sum_probs=67.4
Q ss_pred HHHHHHHHHcCC---eEEEEecCCCchhchHHHHHHHHHHhccCC-CCcEEEEEcc--cHHHHHHHHHHHHHHhCCCCCc
Q 001615 287 KAEFLKAVAENQ---VLVVSGETGCGKTTQLPQFILEEELSSLRG-ADCNIICTQP--RRISAISVAARVSSERGENLGE 360 (1044)
Q Consensus 287 Q~~~i~~i~~~~---~vii~a~TGSGKTt~~p~~il~~~~~~~~~-~~~~ilv~~P--~r~la~qva~rv~~~~~~~~g~ 360 (1044)
...+..++.+++ -++++||+|+||||.+-.+ ...++..... ..+..+. .| ....+.+ ++. +.....
T Consensus 32 ~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~l-A~~Llc~~~~~~~~~~~~-~~~~~c~~c~~----i~~--~~hPdl 103 (351)
T PRK09112 32 EAFLAQAYREGKLHHALLFEGPEGIGKATLAFHL-ANHILSHPDPAEAPETLA-DPDPASPVWRQ----IAQ--GAHPNL 103 (351)
T ss_pred HHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHH-HHHHcCCCccccCccccC-CCCCCCHHHHH----HHc--CCCCCE
Confidence 345666677777 5999999999999766544 3344332110 0111111 11 2222222 211 111100
Q ss_pred EEEEEEeccccC-CCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcc
Q 001615 361 TVGYQIRLESKR-SAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (1044)
Q Consensus 361 ~vgy~ir~~~~~-~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmS 437 (1044)
. -.....+.+. ...+.|.|----.+.+.+...+....+.+|||||||. ++..-...++|.+..-.++..+|++|
T Consensus 104 ~-~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~--l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 104 L-HITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADD--MNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred E-EeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhh--cCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 0 0000011110 0112333322223455555445567889999999996 45555666777775544445555554
No 227
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=95.82 E-value=0.049 Score=67.36 Aligned_cols=114 Identities=18% Similarity=0.250 Sum_probs=90.6
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCc--EEEEeecccccccCCCC
Q 001615 552 EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKR--KIVLATNIAESSITIDD 629 (1044)
Q Consensus 552 ~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~--kIlvaTniae~GidIp~ 629 (1044)
..+.++|||..-.+..+-|...|.. .++.-+-|.|....++|+...++|....+ ..|++|--...|||+-+
T Consensus 1274 ~eghRvLIfTQMtkmLDVLeqFLny-------HgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtg 1346 (1958)
T KOG0391|consen 1274 SEGHRVLIFTQMTKMLDVLEQFLNY-------HGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTG 1346 (1958)
T ss_pred hcCceEEehhHHHHHHHHHHHHHhh-------cceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcccccccc
Confidence 4567999999888877777777765 56778889999999999999999987654 67899999999999999
Q ss_pred eEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCCCCcEEEEecChhhH
Q 001615 630 VVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRIIH 687 (1044)
Q Consensus 630 V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~~G~c~~L~t~~~~ 687 (1044)
.+.||-||---+...| +.+.-|.-|.|+++.=+.|||+++..-
T Consensus 1347 ADTVvFYDsDwNPtMD---------------aQAQDrChRIGqtRDVHIYRLISe~TI 1389 (1958)
T KOG0391|consen 1347 ADTVVFYDSDWNPTMD---------------AQAQDRCHRIGQTRDVHIYRLISERTI 1389 (1958)
T ss_pred CceEEEecCCCCchhh---------------hHHHHHHHhhcCccceEEEEeeccchH
Confidence 9999986643333222 356667777778888999999998643
No 228
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.79 E-value=0.022 Score=54.90 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=25.7
Q ss_pred CCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHH
Q 001615 297 NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRIS 342 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~l 342 (1044)
++.+++.||+||||||.+...+.... .....++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~-----~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG-----PPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC-----CCCCCEEEECCEEcc
Confidence 57899999999999976655544321 111235665555443
No 229
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.71 E-value=0.038 Score=69.52 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=28.8
Q ss_pred cCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcc
Q 001615 392 EDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (1044)
Q Consensus 392 ~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmS 437 (1044)
..+...+++++||||+|. +..+-.-.+||.+....+...+|+.+
T Consensus 114 ~~p~~~~~KV~IIDEad~--lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 114 FAPAESRYKIFIIDEAHM--VTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred hchhcCCceEEEEechhh--cCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 344557899999999995 44555556666665544455555544
No 230
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=95.71 E-value=0.029 Score=46.04 Aligned_cols=49 Identities=16% Similarity=0.307 Sum_probs=43.7
Q ss_pred HHHHHHhcccccc-ceeeecccCChhhHHHHHHHHHhcCceeeeecCCCc
Q 001615 121 WWGKLEQMKRGEE-QEMIIKRKFSRADQQTLADMAHQLGLHFHAYNKGKA 169 (1044)
Q Consensus 121 w~~~l~~~~~~~~-~e~~~~~~~s~~e~~~i~~~a~~~g~~~~~~~~~~~ 169 (1044)
+...+..|..+.+ .++.|+++++..++..+|.+|.+.|+++.+.|.|..
T Consensus 4 ~~~~i~~F~~~~~~~~l~F~p~ls~~eR~~vH~lA~~~gL~s~S~G~g~~ 53 (60)
T cd02641 4 LKAMVKAFMKDPKATELEFPPTLSSHDRLLVHELAEELGLRHESTGEGSD 53 (60)
T ss_pred HHHHHHHHHcCCCcCcEECCCCCCHHHHHHHHHHHHHcCCceEeeCCCCc
Confidence 5667888988887 899999999999999999999999999999887666
No 231
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=95.70 E-value=0.055 Score=65.52 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=39.6
Q ss_pred CcEEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCC---CCcEEEE
Q 001615 611 KRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV---QPGVCYK 680 (1044)
Q Consensus 611 ~~kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~---~~G~c~~ 680 (1044)
-++.|+|-..+-.|-|=|+|=.+.-..-.. |-.+=.|-+||.-|. ..|.-++
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~------------------SeiSK~QeVGRGLRLaVNe~G~RV~ 537 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSG------------------SEISKLQEVGRGLRLAVNENGERVT 537 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCC------------------cchHHHHHhccceeeeeccccceec
Confidence 489999999999999999986665322222 344778999999997 5677665
No 232
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.68 E-value=0.038 Score=67.34 Aligned_cols=49 Identities=20% Similarity=0.345 Sum_probs=31.1
Q ss_pred HHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEc
Q 001615 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILM 436 (1044)
Q Consensus 386 Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilm 436 (1044)
|++.+...+.-..+.++||||||. +..+-.-.+||.+..-.+..++|+.
T Consensus 107 li~~~~~~p~~g~~KV~IIDEah~--Ls~~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 107 LLDNVQYAPARGRFKVYLIDEVHM--LSRHSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred HHHHHHhhhhcCCCEEEEEechHh--CCHHHHHHHHHHHHcCCCCeEEEEe
Confidence 334444444456789999999994 4555666777766554444555554
No 233
>PRK06893 DNA replication initiation factor; Validated
Probab=95.65 E-value=0.027 Score=60.34 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=27.0
Q ss_pred CCccceEEechhhhccchhH---HHHHHHHHHcccCCcccEEEcccCCChHH
Q 001615 396 LSCVSHLLVDEIHERGMNED---FLLIILRDLLPRRPDLRLILMSATINADL 444 (1044)
Q Consensus 396 L~~~~~lIiDEaHeR~~~~d---~ll~~lk~~~~~~~~~qiilmSATl~~~~ 444 (1044)
+.++++|||||+|.-..+.+ .+..++..+... ..++|++|++..+..
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~--~~~illits~~~p~~ 138 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ--GKTLLLISADCSPHA 138 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc--CCcEEEEeCCCChHH
Confidence 35778999999995322222 233334333221 235678888875554
No 234
>PRK05642 DNA replication initiation factor; Validated
Probab=95.59 E-value=0.027 Score=60.53 Aligned_cols=16 Identities=19% Similarity=0.532 Sum_probs=14.0
Q ss_pred CeEEEEecCCCchhch
Q 001615 298 QVLVVSGETGCGKTTQ 313 (1044)
Q Consensus 298 ~~vii~a~TGSGKTt~ 313 (1044)
..++++|++|+|||..
T Consensus 46 ~~l~l~G~~G~GKTHL 61 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL 61 (234)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5689999999999954
No 235
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.53 E-value=0.079 Score=63.82 Aligned_cols=49 Identities=20% Similarity=0.357 Sum_probs=31.2
Q ss_pred HHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcc
Q 001615 387 LRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (1044)
Q Consensus 387 l~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmS 437 (1044)
++.+...+...+++++||||+|. +...-.-.+||.+..-.++.++|+.|
T Consensus 113 ie~~~~~P~~gr~KViIIDEah~--Ls~~AaNALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 113 LDKAVYAPTAGRFKVYMIDEVHM--LTNHAFNAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred HHHHHhchhcCCceEEEEEChHh--cCHHHHHHHHHhhccCCCCceEEEEe
Confidence 33333344556899999999995 44555567777665544456666544
No 236
>PRK08727 hypothetical protein; Validated
Probab=95.53 E-value=0.028 Score=60.45 Aligned_cols=17 Identities=41% Similarity=0.534 Sum_probs=14.2
Q ss_pred CeEEEEecCCCchhchH
Q 001615 298 QVLVVSGETGCGKTTQL 314 (1044)
Q Consensus 298 ~~vii~a~TGSGKTt~~ 314 (1044)
+.+++.|++|+|||..+
T Consensus 42 ~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999533
No 237
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.52 E-value=0.038 Score=66.17 Aligned_cols=149 Identities=19% Similarity=0.174 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHc---------CCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhC
Q 001615 285 KMKAEFLKAVAE---------NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERG 355 (1044)
Q Consensus 285 ~~Q~~~i~~i~~---------~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~ 355 (1044)
|+|+-++..+.. -+.+++.-+=|-|||+.+....+-.++..+ ..+..|+++++++.-|..+.+.+.+...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g-~~~~~i~~~A~~~~QA~~~f~~~~~~i~ 79 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG-EPGAEIYCAANTRDQAKIVFDEAKKMIE 79 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC-ccCceEEEEeCCHHHHHHHHHHHHHHHH
Confidence 357777776652 235788889999999877766665554332 2356899999999999999988877643
Q ss_pred CCC--CcEEEEEEeccccCCCCccEEEEchHHHHHHHhcCC-C--CCccceEEechhhhccchhHHHHHHHHHHcccCCc
Q 001615 356 ENL--GETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDP-D--LSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPD 430 (1044)
Q Consensus 356 ~~~--g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~-~--L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~ 430 (1044)
... .......+. ......|.+-..+-+++.+..++ . =.+.+++|+||+|+. ..+-+...++.-+..+++
T Consensus 80 ~~~~l~~~~~~~~~----~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~--~~~~~~~~l~~g~~~r~~ 153 (477)
T PF03354_consen 80 ASPELRKRKKPKII----KSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAH--KDDELYDALESGMGARPN 153 (477)
T ss_pred hChhhccchhhhhh----hhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCC--CCHHHHHHHHhhhccCCC
Confidence 321 111111110 00112233333333333333333 1 125689999999963 333244455555556666
Q ss_pred ccEEEc-ccCC
Q 001615 431 LRLILM-SATI 440 (1044)
Q Consensus 431 ~qiilm-SATl 440 (1044)
.+++.. ||..
T Consensus 154 pl~~~ISTag~ 164 (477)
T PF03354_consen 154 PLIIIISTAGD 164 (477)
T ss_pred ceEEEEeCCCC
Confidence 666655 4443
No 238
>PHA02533 17 large terminase protein; Provisional
Probab=95.52 E-value=0.19 Score=60.52 Aligned_cols=147 Identities=18% Similarity=0.159 Sum_probs=89.2
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC--
Q 001615 280 KLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN-- 357 (1044)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~-- 357 (1044)
.+++.++|.+++..+..++-.++.-+=..|||+.+..+++..++.. .+..+++++|++.-|..+.++++......
T Consensus 57 Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~---~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~ 133 (534)
T PHA02533 57 KVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN---KDKNVGILAHKASMAAEVLDRTKQAIELLPD 133 (534)
T ss_pred ecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHHHHhCHH
Confidence 4778899999999987788888999999999998887776655532 24589999999999999998887543211
Q ss_pred -CC-cEEE---EEEeccccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCccc
Q 001615 358 -LG-ETVG---YQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLR 432 (1044)
Q Consensus 358 -~g-~~vg---y~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~q 432 (1044)
.. ..+. ..+.+ ..++.|.+.|..- +.. + . .+..++|+||+|...-..++...+ ...+.....-+
T Consensus 134 l~~~~i~~~~~~~I~l----~NGS~I~~lss~~--~t~-r--G-~~~~~liiDE~a~~~~~~e~~~ai-~p~lasg~~~r 202 (534)
T PHA02533 134 FLQPGIVEWNKGSIEL----ENGSKIGAYASSP--DAV-R--G-NSFAMIYIDECAFIPNFIDFWLAI-QPVISSGRSSK 202 (534)
T ss_pred HhhcceeecCccEEEe----CCCCEEEEEeCCC--Ccc-C--C-CCCceEEEeccccCCCHHHHHHHH-HHHHHcCCCce
Confidence 00 0000 01111 2356666655421 111 0 1 245679999999532222333332 22223223345
Q ss_pred EEEcccCC
Q 001615 433 LILMSATI 440 (1044)
Q Consensus 433 iilmSATl 440 (1044)
+++.|..-
T Consensus 203 ~iiiSTp~ 210 (534)
T PHA02533 203 IIITSTPN 210 (534)
T ss_pred EEEEECCC
Confidence 66666664
No 239
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.51 E-value=0.066 Score=61.66 Aligned_cols=50 Identities=22% Similarity=0.389 Sum_probs=29.8
Q ss_pred HHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcc
Q 001615 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (1044)
Q Consensus 386 Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmS 437 (1044)
+++.+...+...+..++||||+|. +..+-.-.+++.+....+..++|+.+
T Consensus 107 i~~~~~~~p~~~~~kviIIDEa~~--l~~~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 107 ILDNIYYSPSKSRFKVYLIDEVHM--LSRHSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred HHHHHhcCcccCCceEEEEEChhh--cCHHHHHHHHHHHhcCCCCeEEEEEc
Confidence 344444445566789999999995 33333445566655544455566543
No 240
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.51 E-value=0.11 Score=58.47 Aligned_cols=126 Identities=20% Similarity=0.276 Sum_probs=66.7
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEE-Ec-ccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCC
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIIC-TQ-PRRISAISVAARVSSERGENLGETVGYQIRLESKRS 373 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv-~~-P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~ 373 (1044)
.+++++++||+|+||||.+........ . .+ .+|++ .. +.|..|.+.....+...+. ++... ...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~-~--~g--~~V~Li~~D~~r~~a~eql~~~a~~~~i------~~~~~-~~~-- 178 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK-A--QG--KKVLLAAGDTFRAAAIEQLQVWGERVGV------PVIAQ-KEG-- 178 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-h--cC--CeEEEEecCccchhhHHHHHHHHHHcCc------eEEEe-CCC--
Confidence 467899999999999987766554432 1 22 24443 33 4466665444444444331 21111 000
Q ss_pred CCccEEEEchH-HHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHc-------ccCCcccEEEcccCCChHH
Q 001615 374 AQTRLLFCTTG-VLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLL-------PRRPDLRLILMSATINADL 444 (1044)
Q Consensus 374 ~~~~I~v~T~g-~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~-------~~~~~~qiilmSATl~~~~ 444 (1044)
. .|. ...+.+.. ....++++||||=+- |....+-++.-++.+. ...|+-.++.++||...+.
T Consensus 179 --~-----dpa~~v~~~l~~-~~~~~~D~ViIDTaG-r~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~ 248 (318)
T PRK10416 179 --A-----DPASVAFDAIQA-AKARGIDVLIIDTAG-RLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNA 248 (318)
T ss_pred --C-----CHHHHHHHHHHH-HHhCCCCEEEEeCCC-CCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHH
Confidence 0 111 11111111 123678999999998 5544443333333322 3456677899999975543
No 241
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.43 E-value=0.062 Score=58.78 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=65.2
Q ss_pred CeEEEEecCCCchhchHHHHHHHHHHhcc-CCCC-cEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCC
Q 001615 298 QVLVVSGETGCGKTTQLPQFILEEELSSL-RGAD-CNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQ 375 (1044)
Q Consensus 298 ~~vii~a~TGSGKTt~~p~~il~~~~~~~-~~~~-~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~ 375 (1044)
.+++|+|+|+-|||+.+-.|.-.+..... .... +.+++-.|...-....+..+-..++......
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~-------------- 127 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPR-------------- 127 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCC--------------
Confidence 58999999999999877666655432211 1112 3445555777777777777777776543211
Q ss_pred ccEEEEchHHHHHHHhcCCCCCccceEEechhhhc--c--chhHHHHHHHHHHcccCCcccEEEc
Q 001615 376 TRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHER--G--MNEDFLLIILRDLLPRRPDLRLILM 436 (1044)
Q Consensus 376 ~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR--~--~~~d~ll~~lk~~~~~~~~~qiilm 436 (1044)
.++--.+. ..++.|.. -++.+|||||+|.- + ...--.+..+|.+.+.. ++-+|++
T Consensus 128 ~~~~~~~~-~~~~llr~----~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL-~ipiV~v 186 (302)
T PF05621_consen 128 DRVAKLEQ-QVLRLLRR----LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL-QIPIVGV 186 (302)
T ss_pred CCHHHHHH-HHHHHHHH----cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc-CCCeEEe
Confidence 00100011 11222221 36899999999961 1 22234456667664432 3344443
No 242
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.41 E-value=0.066 Score=58.87 Aligned_cols=21 Identities=33% Similarity=0.703 Sum_probs=17.1
Q ss_pred CCeEEEEecCCCchhchHHHH
Q 001615 297 NQVLVVSGETGCGKTTQLPQF 317 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~p~~ 317 (1044)
...++++||+|+||||.+-.+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l 63 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNL 63 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHH
Confidence 347899999999999776654
No 243
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.39 E-value=0.043 Score=64.19 Aligned_cols=42 Identities=21% Similarity=0.383 Sum_probs=26.8
Q ss_pred CCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccC
Q 001615 394 PDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT 439 (1044)
Q Consensus 394 ~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSAT 439 (1044)
+.-..+.++||||||. +..+..-.+|+.+.. |...++++-||
T Consensus 117 p~~g~~KV~IIDEah~--Ls~~A~NALLKtLEE--Pp~~viFILaT 158 (484)
T PRK14956 117 PMGGKYKVYIIDEVHM--LTDQSFNALLKTLEE--PPAHIVFILAT 158 (484)
T ss_pred hhcCCCEEEEEechhh--cCHHHHHHHHHHhhc--CCCceEEEeec
Confidence 3345789999999994 566666677777644 23344443344
No 244
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.35 E-value=0.064 Score=57.40 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=17.4
Q ss_pred cCCeEEEEecCCCchhchHHHH
Q 001615 296 ENQVLVVSGETGCGKTTQLPQF 317 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~ 317 (1044)
.++.++++|++|+|||+.+-.+
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai 62 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQAL 62 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 4568999999999999655433
No 245
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.35 E-value=0.19 Score=62.05 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=18.6
Q ss_pred CccceEEechhhhccc-hhHHHHHHHHHH
Q 001615 397 SCVSHLLVDEIHERGM-NEDFLLIILRDL 424 (1044)
Q Consensus 397 ~~~~~lIiDEaHeR~~-~~d~ll~~lk~~ 424 (1044)
..+.+|||||+|...- ..+.|..+++..
T Consensus 868 r~v~IIILDEID~L~kK~QDVLYnLFR~~ 896 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKTQKVLFTLFDWP 896 (1164)
T ss_pred ccceEEEeehHhhhCccHHHHHHHHHHHh
Confidence 4567999999995321 446666666643
No 246
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.32 E-value=0.1 Score=63.33 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=31.6
Q ss_pred HHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcc
Q 001615 387 LRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (1044)
Q Consensus 387 l~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmS 437 (1044)
...+...+...++.++||||||. +..+-.-.+||.+....+...+|+.+
T Consensus 107 ~~~~~~~P~~~~~KVvIIDEah~--Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 107 RDRAFYAPAQSRYRIFIVDEAHM--VTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred HHHHHhhhhcCCceEEEEECCCc--CCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 33444455668899999999994 44555556677666544455555544
No 247
>PRK09183 transposase/IS protein; Provisional
Probab=95.29 E-value=0.23 Score=54.24 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=21.6
Q ss_pred HHcCCeEEEEecCCCchhchHHHHHHH
Q 001615 294 VAENQVLVVSGETGCGKTTQLPQFILE 320 (1044)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~p~~il~ 320 (1044)
+..+.++++.||+|+|||+.+..+...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 567889999999999999766655433
No 248
>PRK08116 hypothetical protein; Validated
Probab=95.29 E-value=0.074 Score=58.38 Aligned_cols=27 Identities=33% Similarity=0.382 Sum_probs=18.9
Q ss_pred CCeEEEEecCCCchhchHHHHHHHHHHh
Q 001615 297 NQVLVVSGETGCGKTTQLPQFILEEELS 324 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~p~~il~~~~~ 324 (1044)
+.-+++.|++|+|||..+. .+...+..
T Consensus 114 ~~gl~l~G~~GtGKThLa~-aia~~l~~ 140 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAA-CIANELIE 140 (268)
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 4459999999999995443 45555443
No 249
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.24 E-value=0.072 Score=63.83 Aligned_cols=47 Identities=19% Similarity=0.317 Sum_probs=29.3
Q ss_pred HHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEc
Q 001615 388 RQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILM 436 (1044)
Q Consensus 388 ~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilm 436 (1044)
..+...+.-.+++++||||||. +..+..-.++|.+....+...+|+.
T Consensus 109 ~~~~~~p~~~~~kV~iIDE~~~--ls~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 109 DNIPYAPTKGRFKVYLIDEVHM--LSGHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred HHHhhccccCCcEEEEEEChHh--cCHHHHHHHHHHHhccCCCeEEEEE
Confidence 3333344456789999999994 4455556667766554445555553
No 250
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.24 E-value=0.091 Score=56.10 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=19.3
Q ss_pred HcCCeEEEEecCCCchhchHHHHHH
Q 001615 295 AENQVLVVSGETGCGKTTQLPQFIL 319 (1044)
Q Consensus 295 ~~~~~vii~a~TGSGKTt~~p~~il 319 (1044)
..+..+++.||+|+|||+.+-.+.-
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~ 60 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACA 60 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999976654443
No 251
>PTZ00146 fibrillarin; Provisional
Probab=95.24 E-value=0.029 Score=61.42 Aligned_cols=12 Identities=17% Similarity=0.265 Sum_probs=7.9
Q ss_pred CccceEEechhh
Q 001615 397 SCVSHLLVDEIH 408 (1044)
Q Consensus 397 ~~~~~lIiDEaH 408 (1044)
..+++|+.|=++
T Consensus 201 ~~vDvV~~Dva~ 212 (293)
T PTZ00146 201 PMVDVIFADVAQ 212 (293)
T ss_pred CCCCEEEEeCCC
Confidence 357778777654
No 252
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.18 E-value=0.063 Score=63.48 Aligned_cols=49 Identities=22% Similarity=0.341 Sum_probs=31.1
Q ss_pred HHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcc
Q 001615 387 LRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (1044)
Q Consensus 387 l~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmS 437 (1044)
+......|...++.++||||+|. +..+-.-.++|.+....+...+|+.+
T Consensus 105 ie~~~~~P~~~~~KVvIIDEah~--Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 105 LENSCYLPISSKFKVYIIDEVHM--LSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred HHHHHhccccCCceEEEEeChHh--CCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 34444456678899999999995 44444555666665544455555543
No 253
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.15 E-value=0.1 Score=63.52 Aligned_cols=50 Identities=16% Similarity=0.346 Sum_probs=32.8
Q ss_pred HHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcc
Q 001615 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (1044)
Q Consensus 386 Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmS 437 (1044)
++..+...+...++++|||||+|. +...-.-.++|.+....+...+|+.+
T Consensus 120 Iie~~~~~P~~a~~KVvIIDEad~--Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 120 IIESVRYRPVSARYKVYIIDEVHM--LSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHHhchhcCCcEEEEEEChHh--CCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 445555566778899999999995 34444555666655544556666644
No 254
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.15 E-value=0.039 Score=59.53 Aligned_cols=121 Identities=19% Similarity=0.201 Sum_probs=61.5
Q ss_pred HHHHHHHHHH------cCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCC
Q 001615 286 MKAEFLKAVA------ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLG 359 (1044)
Q Consensus 286 ~Q~~~i~~i~------~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g 359 (1044)
.|+.++.++. ...+.+..||.|+|||..+..+.-+..-. .-. |-|.+- .-.+.++|..++
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~--~~~--------~~rvl~----lnaSderGisvv 105 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCE--QLF--------PCRVLE----LNASDERGISVV 105 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCc--ccc--------ccchhh----hcccccccccch
Confidence 4555555443 35689999999999998777665543211 111 333321 112234443311
Q ss_pred cEEEEEEeccccCCCCccEEEEchHHHHHHHhcC-CCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEccc
Q 001615 360 ETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVED-PDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSA 438 (1044)
Q Consensus 360 ~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~-~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSA 438 (1044)
. -.+. .-.++.+..+ ..+ .....+.+|||||||- +..|--..+.|.+.......+.|+..-
T Consensus 106 r---~Kik------~fakl~~~~~-------~~~~~~~~~fKiiIlDEcds--mtsdaq~aLrr~mE~~s~~trFiLIcn 167 (346)
T KOG0989|consen 106 R---EKIK------NFAKLTVLLK-------RSDGYPCPPFKIIILDECDS--MTSDAQAALRRTMEDFSRTTRFILICN 167 (346)
T ss_pred h---hhhc------CHHHHhhccc-------cccCCCCCcceEEEEechhh--hhHHHHHHHHHHHhccccceEEEEEcC
Confidence 0 0000 0011111111 112 2567789999999996 455555555555544333455555443
No 255
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.14 E-value=0.069 Score=64.95 Aligned_cols=67 Identities=19% Similarity=0.248 Sum_probs=36.5
Q ss_pred HHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccCCChHHHHhhhCCCCee
Q 001615 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINADLFSKYFGNAPTV 455 (1044)
Q Consensus 386 Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSATl~~~~~~~~f~~~~~i 455 (1044)
++..+...+...+++++||||||. +..+-.-.++|.+....+...+|+. +|-+..+.......|-.+
T Consensus 112 li~~~~~~p~~g~~KV~IIDEvh~--Ls~~a~NaLLKtLEEPP~~~~fIL~-Ttd~~kil~TIlSRc~~~ 178 (618)
T PRK14951 112 LLEQAVYKPVQGRFKVFMIDEVHM--LTNTAFNAMLKTLEEPPEYLKFVLA-TTDPQKVPVTVLSRCLQF 178 (618)
T ss_pred HHHHHHhCcccCCceEEEEEChhh--CCHHHHHHHHHhcccCCCCeEEEEE-ECCchhhhHHHHHhceee
Confidence 444444455667899999999994 4444455566655443334455543 353333333333334333
No 256
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.12 E-value=0.07 Score=64.95 Aligned_cols=44 Identities=18% Similarity=0.334 Sum_probs=28.8
Q ss_pred cCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcc
Q 001615 392 EDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (1044)
Q Consensus 392 ~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmS 437 (1044)
..+.+.++++|||||+|. +..+-.-.++|.+....+...+|+.+
T Consensus 113 ~~P~~gk~KVIIIDEad~--Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 113 YAPTAGKYKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hhhhhCCcEEEEEECccc--cCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 344567889999999994 44444556666665544556666544
No 257
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.09 E-value=0.047 Score=58.76 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=16.1
Q ss_pred cCCeEEEEecCCCchhchHH
Q 001615 296 ENQVLVVSGETGCGKTTQLP 315 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p 315 (1044)
.+..++++||+|||||+.+-
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34689999999999996544
No 258
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.07 E-value=0.089 Score=53.09 Aligned_cols=53 Identities=17% Similarity=0.272 Sum_probs=34.4
Q ss_pred HHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccC
Q 001615 385 VLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT 439 (1044)
Q Consensus 385 ~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSAT 439 (1044)
.+...+...+.-..+.++||||||. +..+..-.+||.+..-.++..+|+.|-.
T Consensus 89 ~i~~~~~~~~~~~~~KviiI~~ad~--l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 89 EIIEFLSLSPSEGKYKVIIIDEADK--LTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp HHHHHCTSS-TTSSSEEEEEETGGG--S-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred HHHHHHHHHHhcCCceEEEeehHhh--hhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 3444444455557899999999995 5666667777777665556666666544
No 259
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.07 E-value=0.17 Score=58.03 Aligned_cols=141 Identities=21% Similarity=0.227 Sum_probs=71.4
Q ss_pred HHHHHHHHHcCC---eEEEEecCCCchhchHHHHHHHHHHhccC-CCC-----cEEEEEcccHHHHHHHHHHHHHHhCCC
Q 001615 287 KAEFLKAVAENQ---VLVVSGETGCGKTTQLPQFILEEELSSLR-GAD-----CNIICTQPRRISAISVAARVSSERGEN 357 (1044)
Q Consensus 287 Q~~~i~~i~~~~---~vii~a~TGSGKTt~~p~~il~~~~~~~~-~~~-----~~ilv~~P~r~la~qva~rv~~~~~~~ 357 (1044)
.+.+..++.+++ -.+++||.|+||++.+..+.-. ++.... +.. +..+.+.+.-. .++++.. +..
T Consensus 28 ~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~-Llc~~~~~~~~~~~~~~~l~~~~~c~----~c~~i~~--~~H 100 (365)
T PRK07471 28 EAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARF-LLATPPPGGDGAVPPPTSLAIDPDHP----VARRIAA--GAH 100 (365)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHH-HhCCCCCCCCccccccccccCCCCCh----HHHHHHc--cCC
Confidence 344556666665 5899999999999766544433 333221 111 01111112211 2222321 111
Q ss_pred CCcEEEEEEec--cccC-CCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEE
Q 001615 358 LGETVGYQIRL--ESKR-SAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLI 434 (1044)
Q Consensus 358 ~g~~vgy~ir~--~~~~-~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qii 434 (1044)
... +.+.- +.+. .....|.|-.--.+.+.+...+......+|||||+|. ++..-.-.++|.+....+...+|
T Consensus 101 PDl---~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~--m~~~aanaLLK~LEepp~~~~~I 175 (365)
T PRK07471 101 GGL---LTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADE--MNANAANALLKVLEEPPARSLFL 175 (365)
T ss_pred CCe---EEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHh--cCHHHHHHHHHHHhcCCCCeEEE
Confidence 110 01111 1110 0123454444444556665555667889999999995 56666667777776544455555
Q ss_pred EcccC
Q 001615 435 LMSAT 439 (1044)
Q Consensus 435 lmSAT 439 (1044)
++|..
T Consensus 176 L~t~~ 180 (365)
T PRK07471 176 LVSHA 180 (365)
T ss_pred EEECC
Confidence 55544
No 260
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.04 E-value=0.086 Score=66.49 Aligned_cols=106 Identities=18% Similarity=0.092 Sum_probs=69.5
Q ss_pred chHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEE
Q 001615 283 AFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETV 362 (1044)
Q Consensus 283 i~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~v 362 (1044)
+.+-|.+++... ...++|.|..|||||+.+..-+...+ ....-...+||++.-|+.+|.++.+|+.+..+..
T Consensus 10 Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li-~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~----- 81 (721)
T PRK11773 10 LNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLM-QVENASPYSIMAVTFTNKAAAEMRHRIEQLLGTS----- 81 (721)
T ss_pred cCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHH-HcCCCChhHeEeeeccHHHHHHHHHHHHHHhccC-----
Confidence 566788887643 45688999999999977665554433 2212234589999999999999999998875421
Q ss_pred EEEEeccccCCCCccEEEEchHH-HHHHHhcCC---CCCccceEEechhhh
Q 001615 363 GYQIRLESKRSAQTRLLFCTTGV-LLRQLVEDP---DLSCVSHLLVDEIHE 409 (1044)
Q Consensus 363 gy~ir~~~~~~~~~~I~v~T~g~-Ll~~l~~~~---~L~~~~~lIiDEaHe 409 (1044)
...+.|+|--. ..++|.... .+. -.+-|+|+.+.
T Consensus 82 ------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d~ 119 (721)
T PRK11773 82 ------------QGGMWVGTFHGLAHRLLRAHWQDANLP-QDFQILDSDDQ 119 (721)
T ss_pred ------------CCCCEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHHH
Confidence 12467888543 344444322 121 23568898874
No 261
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.00 E-value=0.13 Score=70.87 Aligned_cols=138 Identities=15% Similarity=0.157 Sum_probs=84.3
Q ss_pred CCCchHHHHHHHHHHHcC--CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 001615 280 KLPAFKMKAEFLKAVAEN--QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (1044)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~--~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~ 357 (1044)
.+++.+-|.+++..+..+ ++.+|+|+.|+||||.+-. +++.+.. .+.+|++++||--+|..+.+.. +..
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~-l~~~~~~----~G~~V~~lAPTgrAA~~L~e~~----g~~ 497 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQL-LLHLASE----QGYEIQIITAGSLSAQELRQKI----PRL 497 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHH-HHHHHHh----cCCeEEEEeCCHHHHHHHHHHh----cch
Confidence 467888999999998775 7999999999999965543 3333322 2458999999998887665432 211
Q ss_pred CCcEEEEEEeccccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcc
Q 001615 358 LGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (1044)
Q Consensus 358 ~g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmS 437 (1044)
- .++. ++....... ...-|...++ ..+..+..-++|||||+-. +++..+..+++.+.. .+.|+|++-
T Consensus 498 A-~Ti~---~~l~~l~~~--~~~~tv~~fl---~~~~~l~~~~vlIVDEAsM--l~~~~~~~Ll~~a~~--~garvVlvG 564 (1960)
T TIGR02760 498 A-STFI---TWVKNLFND--DQDHTVQGLL---DKSSPFSNKDIFVVDEANK--LSNNELLKLIDKAEQ--HNSKLILLN 564 (1960)
T ss_pred h-hhHH---HHHHhhccc--ccchhHHHhh---cccCCCCCCCEEEEECCCC--CCHHHHHHHHHHHhh--cCCEEEEEc
Confidence 0 0000 000000000 0112222232 2333567789999999994 777777777775533 357888776
Q ss_pred cC
Q 001615 438 AT 439 (1044)
Q Consensus 438 AT 439 (1044)
=+
T Consensus 565 D~ 566 (1960)
T TIGR02760 565 DS 566 (1960)
T ss_pred Ch
Confidence 44
No 262
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.00 E-value=0.11 Score=62.54 Aligned_cols=50 Identities=20% Similarity=0.325 Sum_probs=31.3
Q ss_pred HHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcc
Q 001615 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (1044)
Q Consensus 386 Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmS 437 (1044)
++..+...+...+..++||||||. +..+-.-.+++.+....+...+|+.+
T Consensus 107 ii~~~~~~p~~g~~kViIIDEa~~--ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 107 ILDNIQYMPSQGRYKVYLIDEVHM--LSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred HHHHHHhhhhcCCcEEEEEechhh--ccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 445555555667889999999995 44455556666665443445555543
No 263
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.93 E-value=0.092 Score=59.30 Aligned_cols=134 Identities=15% Similarity=0.230 Sum_probs=67.3
Q ss_pred CchHHHHHHHHHHHcCC----eEEEEecCCCchhchHHHHHHHHHHhccCC--CCcEEEEEcccHHHHHHHHHHHHHHhC
Q 001615 282 PAFKMKAEFLKAVAENQ----VLVVSGETGCGKTTQLPQFILEEELSSLRG--ADCNIICTQPRRISAISVAARVSSERG 355 (1044)
Q Consensus 282 pi~~~Q~~~i~~i~~~~----~vii~a~TGSGKTt~~p~~il~~~~~~~~~--~~~~ilv~~P~r~la~qva~rv~~~~~ 355 (1044)
++||.|...+..+.... -.+++||.|+|||+.+-.+.-. ++..... ..| ..-..+ ..+.. +
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~-llC~~~~~~~~C------g~C~sC----~~~~~--g 69 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAA-LLCEAPQGGGAC------GSCKGC----QLLRA--G 69 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHH-HcCCCCCCCCCC------CCCHHH----HHHhc--C
Confidence 35778888888876533 5889999999999766544333 3221110 001 000111 11110 1
Q ss_pred CCCCcEEEEEEeccccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEE
Q 001615 356 ENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLIL 435 (1044)
Q Consensus 356 ~~~g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiil 435 (1044)
.... + +.+..+.. +..|-|-.---+.+.+...+.....+++||||||. ++..-.-.+||.+..-.++..+|+
T Consensus 70 ~HPD--~-~~i~~~~~---~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~--m~~~aaNaLLK~LEEPp~~~~fiL 141 (328)
T PRK05707 70 SHPD--N-FVLEPEEA---DKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEA--MNRNAANALLKSLEEPSGDTVLLL 141 (328)
T ss_pred CCCC--E-EEEeccCC---CCCCCHHHHHHHHHHHhhccccCCCeEEEECChhh--CCHHHHHHHHHHHhCCCCCeEEEE
Confidence 0000 0 00110000 11222222223455555556677899999999995 555666677776655333344443
Q ss_pred c
Q 001615 436 M 436 (1044)
Q Consensus 436 m 436 (1044)
.
T Consensus 142 ~ 142 (328)
T PRK05707 142 I 142 (328)
T ss_pred E
Confidence 3
No 264
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.87 E-value=0.22 Score=58.35 Aligned_cols=125 Identities=18% Similarity=0.316 Sum_probs=66.6
Q ss_pred CCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCCc
Q 001615 297 NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQT 376 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~~ 376 (1044)
..+++++|++|+||||.+...... +.. .+..+.++.+=+.|..|......++...+..+ |.. .. ..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~-L~~--~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~-----~~~---~~---~~ 160 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARY-FKK--KGLKVGLVAADTYRPAAYDQLKQLAEKIGVPF-----YGD---PD---NK 160 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH-HHH--cCCeEEEecCCCCCHHHHHHHHHHHHHcCCcE-----Eec---CC---cc
Confidence 457899999999999887766543 222 23333344444556666555555555443221 000 00 00
Q ss_pred cEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHc-ccCCcccEEEcccCCChH
Q 001615 377 RLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLL-PRRPDLRLILMSATINAD 443 (1044)
Q Consensus 377 ~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~-~~~~~~qiilmSATl~~~ 443 (1044)
+ ....+.+.+.. +..+++||||.+-....+.+.+.. ++.+. ...|+.-++.++||...+
T Consensus 161 d----~~~i~~~al~~---~~~~DvVIIDTAGr~~~d~~lm~E-l~~l~~~~~pdevlLVvda~~gq~ 220 (437)
T PRK00771 161 D----AVEIAKEGLEK---FKKADVIIVDTAGRHALEEDLIEE-MKEIKEAVKPDEVLLVIDATIGQQ 220 (437)
T ss_pred C----HHHHHHHHHHH---hhcCCEEEEECCCcccchHHHHHH-HHHHHHHhcccceeEEEeccccHH
Confidence 0 11223333332 233589999999622234444333 33332 235677888899987543
No 265
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.85 E-value=0.15 Score=60.73 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=23.6
Q ss_pred CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEc
Q 001615 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQ 337 (1044)
Q Consensus 298 ~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~ 337 (1044)
+.+++.|++|+|||+.+ +.+...+..+ ..+.+++++.
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~--~~~~~v~yi~ 185 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEK--NPNAKVVYVT 185 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHh--CCCCeEEEEE
Confidence 46899999999999544 4444444432 2245666653
No 266
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.85 E-value=0.2 Score=58.42 Aligned_cols=145 Identities=23% Similarity=0.210 Sum_probs=75.6
Q ss_pred EEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHH--------HHHHHHhCCCCCcEEEE-EEeccccC
Q 001615 302 VSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVA--------ARVSSERGENLGETVGY-QIRLESKR 372 (1044)
Q Consensus 302 i~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva--------~rv~~~~~~~~g~~vgy-~ir~~~~~ 372 (1044)
..+.||||||....-.||+..- +|-..-+.++-.+.+|-...- ..+-.+--...+..+.. .|..-+.-
T Consensus 2 f~matgsgkt~~ma~lil~~y~---kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fseh 78 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYK---KGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEH 78 (812)
T ss_pred cccccCCChhhHHHHHHHHHHH---hchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCcc
Confidence 3578999999887777776542 222223444444444432221 11111111111222211 12222223
Q ss_pred CCCccEEEEchHHHHHHHhcCC-------CCCccceE-Eechhhhccchh-----H------HHHHHHHHHcccCCcccE
Q 001615 373 SAQTRLLFCTTGVLLRQLVEDP-------DLSCVSHL-LVDEIHERGMNE-----D------FLLIILRDLLPRRPDLRL 433 (1044)
Q Consensus 373 ~~~~~I~v~T~g~Ll~~l~~~~-------~L~~~~~l-IiDEaHeR~~~~-----d------~ll~~lk~~~~~~~~~qi 433 (1044)
+..-.|.|+|.+-|...+.+.. .|.+..+| +-||+|+-...+ | -....++.....+++--+
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~ 158 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLL 158 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCcee
Confidence 4567899999988877665532 35555554 559999622111 1 112234444556778888
Q ss_pred EEcccCCChH--HHHhhh
Q 001615 434 ILMSATINAD--LFSKYF 449 (1044)
Q Consensus 434 ilmSATl~~~--~~~~~f 449 (1044)
+.+|||.+.+ ...+|=
T Consensus 159 lef~at~~k~k~v~~ky~ 176 (812)
T COG3421 159 LEFSATIPKEKSVEDKYE 176 (812)
T ss_pred ehhhhcCCccccHHHHhc
Confidence 8999999754 344443
No 267
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.85 E-value=0.14 Score=56.18 Aligned_cols=126 Identities=20% Similarity=0.296 Sum_probs=66.1
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEE--cccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCC
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICT--QPRRISAISVAARVSSERGENLGETVGYQIRLESKRS 373 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~--~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~ 373 (1044)
..+.++++|++|+||||.+.-...... . .+ .+|+++ =+.|..+.+.....++.++.. + +... .
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~-~--~g--~~V~li~~D~~r~~a~~ql~~~~~~~~i~----~-~~~~--~--- 135 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK-K--QG--KSVLLAAGDTFRAAAIEQLEEWAKRLGVD----V-IKQK--E--- 135 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-h--cC--CEEEEEeCCCCCHHHHHHHHHHHHhCCeE----E-EeCC--C---
Confidence 356888999999999988776664432 2 22 244333 356776655444454444311 0 0000 0
Q ss_pred CCccEEEEch-HHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHc-------ccCCcccEEEcccCCChHH
Q 001615 374 AQTRLLFCTT-GVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLL-------PRRPDLRLILMSATINADL 444 (1044)
Q Consensus 374 ~~~~I~v~T~-g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~-------~~~~~~qiilmSATl~~~~ 444 (1044)
.. -| ....+.+.. ....++++||||=+- |......++.-++.+. ...++-.++.++||...+.
T Consensus 136 -~~-----dp~~~~~~~l~~-~~~~~~D~ViIDT~G-~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~ 206 (272)
T TIGR00064 136 -GA-----DPAAVAFDAIQK-AKARNIDVVLIDTAG-RLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNA 206 (272)
T ss_pred -CC-----CHHHHHHHHHHH-HHHCCCCEEEEeCCC-CCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHH
Confidence 00 02 122222211 123578999999998 5432222222222222 2336778999999975543
No 268
>PRK12377 putative replication protein; Provisional
Probab=94.84 E-value=0.14 Score=55.29 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=18.8
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHHHH
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEEEL 323 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~~~ 323 (1044)
....+++.|++|+|||..+. .|...+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~-AIa~~l~ 126 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAA-AIGNRLL 126 (248)
T ss_pred cCCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 34689999999999995443 3334443
No 269
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.83 E-value=0.12 Score=59.88 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=26.2
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCchhchHHH
Q 001615 286 MKAEFLKAVAENQVLVVSGETGCGKTTQLPQ 316 (1044)
Q Consensus 286 ~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~ 316 (1044)
..+.++..+..++++++.|++|+|||+.+-.
T Consensus 183 ~le~l~~~L~~~~~iil~GppGtGKT~lA~~ 213 (459)
T PRK11331 183 TIETILKRLTIKKNIILQGPPGVGKTFVARR 213 (459)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHH
Confidence 4566788888999999999999999977654
No 270
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.78 E-value=0.19 Score=58.32 Aligned_cols=123 Identities=17% Similarity=0.232 Sum_probs=66.0
Q ss_pred CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCCcc
Q 001615 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTR 377 (1044)
Q Consensus 298 ~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~~~ 377 (1044)
.+++++|++|+||||.+....... . ..+..+-++.+=|.|..|....+..++..+.. + +..... .
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l--~-~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp----~-~~~~~~------~- 165 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYY--Q-RKGFKPCLVCADTFRAGAFDQLKQNATKARIP----F-YGSYTE------S- 165 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH--H-HCCCCEEEEcCcccchhHHHHHHHHhhccCCe----E-EeecCC------C-
Confidence 578999999999998877665432 2 12333333444466777665544444333211 1 111000 0
Q ss_pred EEEEch-HHHHHHHhcCCCCCccceEEechhhhcc-chhHHHHHHHHHHcccCCcccEEEcccCCC
Q 001615 378 LLFCTT-GVLLRQLVEDPDLSCVSHLLVDEIHERG-MNEDFLLIILRDLLPRRPDLRLILMSATIN 441 (1044)
Q Consensus 378 I~v~T~-g~Ll~~l~~~~~L~~~~~lIiDEaHeR~-~~~d~ll~~lk~~~~~~~~~qiilmSATl~ 441 (1044)
.| .+..+.+..- .-.++++||||=+- |. .+.+.+..+.+......|+..+++++||..
T Consensus 166 ----dp~~i~~~~l~~~-~~~~~DvViIDTaG-r~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G 225 (429)
T TIGR01425 166 ----DPVKIASEGVEKF-KKENFDIIIVDTSG-RHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG 225 (429)
T ss_pred ----CHHHHHHHHHHHH-HhCCCCEEEEECCC-CCcchHHHHHHHHHHhhhcCCcEEEEEeccccC
Confidence 11 1111111110 01468999999997 43 344444444333333557778889999974
No 271
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.72 E-value=0.12 Score=62.53 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=23.1
Q ss_pred eCcEEEeecCHHHHHHHHHHHHHHHHHHHHHH
Q 001615 989 LGGYLHFSASKTVLELIRKLRGELDKLLNRKI 1020 (1044)
Q Consensus 989 ~d~~~~~~~~~~~~~l~~~lR~~ld~ll~~k~ 1020 (1044)
++|--.|..+-+--.++.+|+..|..-|....
T Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (702)
T PRK14960 611 IGGNTVFHIPQEYENMLTQLQQALIEALKQQW 642 (702)
T ss_pred ccceEEEecHHHHHHHHHHHHHHHHHHHHhhC
Confidence 46677788888888888888887666555443
No 272
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.16 Score=58.16 Aligned_cols=113 Identities=19% Similarity=0.271 Sum_probs=56.4
Q ss_pred eEEEEecCCCchhchHHHHHHHHHHhccCCCC-cEEEEE-cccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCCc
Q 001615 299 VLVVSGETGCGKTTQLPQFILEEELSSLRGAD-CNIICT-QPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQT 376 (1044)
Q Consensus 299 ~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~-~~ilv~-~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~~ 376 (1044)
+++|.|+||+||| +...++.+.......... .-|=|. -+++ .|+...+...++.. +.+
T Consensus 44 n~~iyG~~GTGKT-~~~~~v~~~l~~~~~~~~~~yINc~~~~t~---~~i~~~i~~~~~~~----------------p~~ 103 (366)
T COG1474 44 NIIIYGPTGTGKT-ATVKFVMEELEESSANVEVVYINCLELRTP---YQVLSKILNKLGKV----------------PLT 103 (366)
T ss_pred cEEEECCCCCCHh-HHHHHHHHHHHhhhccCceEEEeeeeCCCH---HHHHHHHHHHcCCC----------------CCC
Confidence 6999999999998 566777777655432221 111111 1221 23334444433300 000
Q ss_pred cEEEEchHHHHHHHhcCCCCCccceEEechhhhccchh--HHHHHHHHHHcccCCcccEEEc
Q 001615 377 RLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNE--DFLLIILRDLLPRRPDLRLILM 436 (1044)
Q Consensus 377 ~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~--d~ll~~lk~~~~~~~~~qiilm 436 (1044)
-..+...+-.+...-......-+||+||++. ..+. +.+..+++.--.. ..++++.
T Consensus 104 --g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~-L~~~~~~~LY~L~r~~~~~--~~~v~vi 160 (366)
T COG1474 104 --GDSSLEILKRLYDNLSKKGKTVIVILDEVDA-LVDKDGEVLYSLLRAPGEN--KVKVSII 160 (366)
T ss_pred --CCchHHHHHHHHHHHHhcCCeEEEEEcchhh-hccccchHHHHHHhhcccc--ceeEEEE
Confidence 1122233333222222456678899999994 2333 5776766654333 4444433
No 273
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.70 E-value=0.32 Score=58.40 Aligned_cols=145 Identities=17% Similarity=0.182 Sum_probs=90.6
Q ss_pred HHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC-CcEE----E
Q 001615 289 EFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENL-GETV----G 363 (1044)
Q Consensus 289 ~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~-g~~v----g 363 (1044)
.+++.. +.+-.++..|==.|||..+. +++-.++..- .+.+|++++|.+..+..+.+++...+.... +..+ |
T Consensus 247 ~~~~~f-kqk~tVflVPRR~GKTwivv-~iI~~ll~s~--~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG 322 (738)
T PHA03368 247 AAVRHF-RQRATVFLVPRRHGKTWFLV-PLIALALATF--RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG 322 (738)
T ss_pred HHHHHh-hccceEEEecccCCchhhHH-HHHHHHHHhC--CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC
Confidence 344333 45668889999999997665 4444333221 256999999999999999999887533110 1111 1
Q ss_pred EEE--eccccCCCCccEEEEchHHHHHHHhcCC--CCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccC
Q 001615 364 YQI--RLESKRSAQTRLLFCTTGVLLRQLVEDP--DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT 439 (1044)
Q Consensus 364 y~i--r~~~~~~~~~~I~v~T~g~Ll~~l~~~~--~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSAT 439 (1044)
-.+ .+.+ .....|.|.+. .+.. .=.++++||||||++ +..+.+..++-.+... +.++|.+|.|
T Consensus 323 e~I~i~f~n--G~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqF--Ik~~al~~ilp~l~~~--n~k~I~ISS~ 389 (738)
T PHA03368 323 ETISFSFPD--GSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANF--IRPDAVQTIMGFLNQT--NCKIIFVSST 389 (738)
T ss_pred cEEEEEecC--CCccEEEEEec-------cCCCCccCCcccEEEEechhh--CCHHHHHHHHHHHhcc--CccEEEEecC
Confidence 111 2211 11236777643 1111 113789999999997 6667777776444443 7899999999
Q ss_pred CChHHHHhhhC
Q 001615 440 INADLFSKYFG 450 (1044)
Q Consensus 440 l~~~~~~~~f~ 450 (1044)
-..+.-..|+.
T Consensus 390 Ns~~~sTSFL~ 400 (738)
T PHA03368 390 NTGKASTSFLY 400 (738)
T ss_pred CCCccchHHHH
Confidence 87766555553
No 274
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.66 E-value=0.12 Score=65.16 Aligned_cols=106 Identities=19% Similarity=0.115 Sum_probs=69.7
Q ss_pred chHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEE
Q 001615 283 AFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETV 362 (1044)
Q Consensus 283 i~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~v 362 (1044)
+.+-|.+++... ...++|.|..|||||+.+..-+...+ ....-...+||++..|+.+|..+.+|+.+..+..
T Consensus 5 Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li-~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~----- 76 (715)
T TIGR01075 5 LNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLL-SVENASPHSIMAVTFTNKAAAEMRHRIGALLGTS----- 76 (715)
T ss_pred cCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHH-HcCCCCHHHeEeeeccHHHHHHHHHHHHHHhccc-----
Confidence 456788887643 45689999999999987766555443 2212234589999999999999999998875421
Q ss_pred EEEEeccccCCCCccEEEEchHH-HHHHHhcCC---CCCccceEEechhhh
Q 001615 363 GYQIRLESKRSAQTRLLFCTTGV-LLRQLVEDP---DLSCVSHLLVDEIHE 409 (1044)
Q Consensus 363 gy~ir~~~~~~~~~~I~v~T~g~-Ll~~l~~~~---~L~~~~~lIiDEaHe 409 (1044)
...+.|+|--. .++.|.... .+. -.+-|+|+.+.
T Consensus 77 ------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d~ 114 (715)
T TIGR01075 77 ------------ARGMWIGTFHGLAHRLLRAHHLDAGLP-QDFQILDSDDQ 114 (715)
T ss_pred ------------ccCcEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHHH
Confidence 12467888543 334444322 121 13457888874
No 275
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.65 E-value=0.12 Score=58.75 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=22.7
Q ss_pred HHHHHHHHcCC--eEEEEecCCCchhchHHHHHH
Q 001615 288 AEFLKAVAENQ--VLVVSGETGCGKTTQLPQFIL 319 (1044)
Q Consensus 288 ~~~i~~i~~~~--~vii~a~TGSGKTt~~p~~il 319 (1044)
..+...+.+++ .+++.||+|+|||+.+-.+.-
T Consensus 25 ~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 25 ERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 33444555565 799999999999976655543
No 276
>PRK06921 hypothetical protein; Provisional
Probab=94.56 E-value=0.14 Score=56.21 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=19.3
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHHHH
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEEEL 323 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~~~ 323 (1044)
.+..+++.|+||+|||..+. .|...+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHHh
Confidence 46789999999999995443 3344443
No 277
>PRK10867 signal recognition particle protein; Provisional
Probab=94.52 E-value=0.27 Score=57.43 Aligned_cols=126 Identities=18% Similarity=0.235 Sum_probs=67.9
Q ss_pred CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCCcc
Q 001615 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTR 377 (1044)
Q Consensus 298 ~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~~~ 377 (1044)
.+++++|++||||||.+.-+....... .+...-++..=+.|..|....+..++..+.. + |... . .
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~--~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~----v-~~~~---~---~-- 165 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKK--KKKKVLLVAADVYRPAAIEQLKTLGEQIGVP----V-FPSG---D---G-- 165 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHh--cCCcEEEEEccccchHHHHHHHHHHhhcCCe----E-EecC---C---C--
Confidence 478899999999999887766543211 1334445556678887765444444443322 1 1000 0 0
Q ss_pred EEEEchHHHHHHHhcCCCCCccceEEechhhhccc-hhHHHHHHHHHHc-ccCCcccEEEcccCCChH
Q 001615 378 LLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGM-NEDFLLIILRDLL-PRRPDLRLILMSATINAD 443 (1044)
Q Consensus 378 I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~-~~d~ll~~lk~~~-~~~~~~qiilmSATl~~~ 443 (1044)
..|.-+...........++++||||=+= |.. +.+.+.. +..+. ...|+--+++++|+...+
T Consensus 166 ---~dp~~i~~~a~~~a~~~~~DvVIIDTaG-rl~~d~~lm~e-L~~i~~~v~p~evllVlda~~gq~ 228 (433)
T PRK10867 166 ---QDPVDIAKAALEEAKENGYDVVIVDTAG-RLHIDEELMDE-LKAIKAAVNPDEILLVVDAMTGQD 228 (433)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcccCHHHHHH-HHHHHHhhCCCeEEEEEecccHHH
Confidence 1233333222111123568999999987 433 3333333 33322 234555578888886433
No 278
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.46 E-value=0.082 Score=58.95 Aligned_cols=53 Identities=25% Similarity=0.287 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHH
Q 001615 288 AEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISA 343 (1044)
Q Consensus 288 ~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la 343 (1044)
..+..++..+++++|+|+|||||||.+-. ++..+-. ..+..+|+++..+.|+.
T Consensus 123 ~~L~~~v~~~~~ilI~G~tGSGKTTll~a-l~~~i~~--~~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 123 DVLREAVLARKNILVVGGTGSGKTTLANA-LLAEIAK--NDPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHH-HHHHhhc--cCCCceEEEECCchhhc
Confidence 44555677788999999999999986643 3443321 11245899999988873
No 279
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.44 E-value=0.15 Score=61.54 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=31.3
Q ss_pred HHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcc
Q 001615 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (1044)
Q Consensus 386 Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmS 437 (1044)
++..+...|...++.++||||+|. +..+-.-.++|.+....+...+|+.+
T Consensus 107 l~~~~~~~p~~~~~kVvIIDEad~--ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 107 LLDNAQYAPTRGRFKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred HHHHHhhCcccCCceEEEEcCccc--CCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 344444455667889999999995 33344445667665544456666543
No 280
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.43 E-value=0.076 Score=70.72 Aligned_cols=135 Identities=13% Similarity=0.115 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEE
Q 001615 284 FKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVG 363 (1044)
Q Consensus 284 ~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vg 363 (1044)
++-|.++|. ..+++++|+|.-|||||+.+..-++..+... ...-+|+|+.=|+.+|..+.+|+.+.+...+.....
T Consensus 3 t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~--~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~~p~ 78 (1232)
T TIGR02785 3 TDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG--VDIDRLLVVTFTNAAAREMKERIEEALQKALQQEPN 78 (1232)
T ss_pred CHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC--CCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhcCch
Confidence 456888887 4688999999999999998888777766432 112369999999999999999998876433211111
Q ss_pred EEEeccccCCCCccEEEEch-HHHHHHHhcCCCCCcc--ceEEechhhhccchhHHHHHHHHH
Q 001615 364 YQIRLESKRSAQTRLLFCTT-GVLLRQLVEDPDLSCV--SHLLVDEIHERGMNEDFLLIILRD 423 (1044)
Q Consensus 364 y~ir~~~~~~~~~~I~v~T~-g~Ll~~l~~~~~L~~~--~~lIiDEaHeR~~~~d~ll~~lk~ 423 (1044)
. .++......-...-|+|- ...++.+......-++ ++=|.||.....+..+.+..++..
T Consensus 79 ~-~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~~ll~~e~~~~~~e~ 140 (1232)
T TIGR02785 79 S-KHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQLLLIKEVVDDVFEE 140 (1232)
T ss_pred h-HHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHHHHHHHHHHHHHHHH
Confidence 0 011111111234567774 4455555554422222 455789887544444444444443
No 281
>PRK11054 helD DNA helicase IV; Provisional
Probab=94.42 E-value=0.13 Score=63.92 Aligned_cols=116 Identities=18% Similarity=0.099 Sum_probs=75.4
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHH
Q 001615 271 GKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARV 350 (1044)
Q Consensus 271 ~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv 350 (1044)
+......-..-|+++-|.+++.. ....++|.|..|||||+.+.--+...+ ........+|+++..+|.+|..+.+|+
T Consensus 185 ~~~~f~~~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl-~~~~~~~~~IL~ltft~~AA~em~eRL 261 (684)
T PRK11054 185 YADFFSQVESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLL-ARGQAQPEQILLLAFGRQAAEEMDERI 261 (684)
T ss_pred HHHHHHhccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHH-HhCCCCHHHeEEEeccHHHHHHHHHHH
Confidence 44555555567899999988854 345678999999999976654443322 222223458999999999999999999
Q ss_pred HHHhCCCCCcEEEEEEeccccCCCCccEEEEchHHHH-HHHhcCC-CCCccceEEechhh
Q 001615 351 SSERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLL-RQLVEDP-DLSCVSHLLVDEIH 408 (1044)
Q Consensus 351 ~~~~~~~~g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll-~~l~~~~-~L~~~~~lIiDEaH 408 (1044)
.+.++ ...|.+.|--.|- +.+.... ....++.+..|+-.
T Consensus 262 ~~~lg-------------------~~~v~v~TFHSlal~Il~~~~~~~p~~s~~~~d~~~ 302 (684)
T PRK11054 262 RERLG-------------------TEDITARTFHALALHIIQQGSKKVPVISKLENDSKA 302 (684)
T ss_pred HHhcC-------------------CCCcEEEeHHHHHHHHHHHhhhcCCCcCccccchHH
Confidence 87653 0357788865444 3333221 22334555667655
No 282
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.40 E-value=0.22 Score=54.60 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=16.8
Q ss_pred CCeEEEEecCCCchhchHHHH
Q 001615 297 NQVLVVSGETGCGKTTQLPQF 317 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~p~~ 317 (1044)
..++++.||+|||||+.+-.+
T Consensus 42 ~~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHH
Confidence 357899999999999766444
No 283
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.37 E-value=0.16 Score=63.67 Aligned_cols=107 Identities=18% Similarity=0.092 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEE
Q 001615 284 FKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVG 363 (1044)
Q Consensus 284 ~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vg 363 (1044)
.+-|.+++.. ....++|.|..|||||+.+..-+...+...+ -...+|+++..|+.+|.++-+|+.+.++..
T Consensus 3 n~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~-~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~------ 73 (664)
T TIGR01074 3 NPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG-YKARNIAAVTFTNKAAREMKERVAKTLGKG------ 73 (664)
T ss_pred CHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-CCHHHeEEEeccHHHHHHHHHHHHHHhCcc------
Confidence 4568777764 3557899999999999888777666553221 234589999999999999999998766521
Q ss_pred EEEeccccCCCCccEEEEchHHHHHHHhcCC----CCCccceEEechhhhc
Q 001615 364 YQIRLESKRSAQTRLLFCTTGVLLRQLVEDP----DLSCVSHLLVDEIHER 410 (1044)
Q Consensus 364 y~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~----~L~~~~~lIiDEaHeR 410 (1044)
...++.|.|--.|...+.... .+ .-.+-|+||.+.+
T Consensus 74 ----------~~~~v~v~TfHs~a~~il~~~~~~~g~-~~~~~il~~~~~~ 113 (664)
T TIGR01074 74 ----------EARGLTISTFHTLGLDIIKREYNALGY-KSNFSLFDETDQL 113 (664)
T ss_pred ----------ccCCeEEEeHHHHHHHHHHHHHHHhCC-CCCCEEeCHHHHH
Confidence 124688889765544333221 11 1234578988743
No 284
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.32 E-value=0.23 Score=57.96 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=17.1
Q ss_pred CCeEEEEecCCCchhchHHHHH
Q 001615 297 NQVLVVSGETGCGKTTQLPQFI 318 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~p~~i 318 (1044)
..+++|+|++|+|||+.+-..+
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~ 76 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVF 76 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3679999999999997654443
No 285
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.30 E-value=0.076 Score=59.50 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=37.1
Q ss_pred HHHH-HHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHH
Q 001615 286 MKAE-FLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISA 343 (1044)
Q Consensus 286 ~Q~~-~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la 343 (1044)
.|.+ +..++..+.+++|+|+|||||||.+ -.++...... ....+|+++..+.|+.
T Consensus 132 ~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~--~~~~rivtiEd~~El~ 187 (323)
T PRK13833 132 AQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVAS--APEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcC--CCCceEEEecCCcccc
Confidence 3443 4445677889999999999999866 3344443221 1235889999888873
No 286
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.25 E-value=0.29 Score=57.17 Aligned_cols=126 Identities=20% Similarity=0.207 Sum_probs=67.3
Q ss_pred CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCCcc
Q 001615 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTR 377 (1044)
Q Consensus 298 ~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~~~ 377 (1044)
.+++++|++|+||||.+..++...... .+..+.++..=++|..|....++.+...+..+ - ... . .
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~--~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~----~-~~~---~--~--- 164 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKK--QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPV----F-ALG---K--G--- 164 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHh--CCCeEEEEeccccchHHHHHHHHHHHhcCCce----E-ecC---C--C---
Confidence 478999999999999887776653211 23334445555778777665555555433221 0 000 0 0
Q ss_pred EEEEchHHHH-HHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcc-cCCcccEEEcccCCChH
Q 001615 378 LLFCTTGVLL-RQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP-RRPDLRLILMSATINAD 443 (1044)
Q Consensus 378 I~v~T~g~Ll-~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~-~~~~~qiilmSATl~~~ 443 (1044)
..|.-+. +.+.. ....++++||||=+- |....+-+...++.+.. ..|+--+++++||...+
T Consensus 165 ---~~P~~i~~~al~~-~~~~~~DvVIIDTaG-r~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~ 227 (428)
T TIGR00959 165 ---QSPVEIARRALEY-AKENGFDVVIVDTAG-RLQIDEELMEELAAIKEILNPDEILLVVDAMTGQD 227 (428)
T ss_pred ---CCHHHHHHHHHHH-HHhcCCCEEEEeCCC-ccccCHHHHHHHHHHHHhhCCceEEEEEeccchHH
Confidence 1122222 11111 112568999999998 54332333333333322 34555677888886433
No 287
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.21 E-value=0.22 Score=58.41 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=24.5
Q ss_pred CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEc
Q 001615 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQ 337 (1044)
Q Consensus 298 ~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~ 337 (1044)
..+++.|++|+|||..+ +.+...+..+ ..+.+++++.
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~--~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILEN--NPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHh--CCCCcEEEEE
Confidence 46899999999999544 5555555443 2234666664
No 288
>PTZ00146 fibrillarin; Provisional
Probab=94.17 E-value=0.071 Score=58.36 Aligned_cols=15 Identities=20% Similarity=0.107 Sum_probs=8.6
Q ss_pred EEEEecCCCchhchH
Q 001615 300 LVVSGETGCGKTTQL 314 (1044)
Q Consensus 300 vii~a~TGSGKTt~~ 314 (1044)
.|+-.-.|+|=+|+.
T Consensus 135 ~VLDLGaG~G~~t~~ 149 (293)
T PTZ00146 135 KVLYLGAASGTTVSH 149 (293)
T ss_pred EEEEeCCcCCHHHHH
Confidence 456666666656543
No 289
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.13 E-value=0.46 Score=57.48 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=20.9
Q ss_pred CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEE
Q 001615 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICT 336 (1044)
Q Consensus 298 ~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~ 336 (1044)
+.++|.|++|+|||..+ +.|...+... ..+.+|+++
T Consensus 315 NpL~LyG~sGsGKTHLL-~AIa~~a~~~--~~g~~V~Yi 350 (617)
T PRK14086 315 NPLFIYGESGLGKTHLL-HAIGHYARRL--YPGTRVRYV 350 (617)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHHHHh--CCCCeEEEe
Confidence 34899999999999432 3333333221 123456664
No 290
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.06 E-value=0.25 Score=59.97 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=24.7
Q ss_pred HHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcc
Q 001615 385 VLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP 426 (1044)
Q Consensus 385 ~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~ 426 (1044)
.|...+...+...++.+|||||||. +..+-.-.+++.+..
T Consensus 106 ~L~~~~~~~p~~g~~kVIIIDEad~--Lt~~a~naLLk~LEE 145 (624)
T PRK14959 106 RLKEAIGYAPMEGRYKVFIIDEAHM--LTREAFNALLKTLEE 145 (624)
T ss_pred HHHHHHHhhhhcCCceEEEEEChHh--CCHHHHHHHHHHhhc
Confidence 3444444345567789999999995 344445555665544
No 291
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.06 E-value=0.31 Score=50.40 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=29.8
Q ss_pred HHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccC
Q 001615 387 LRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT 439 (1044)
Q Consensus 387 l~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSAT 439 (1044)
++.+...+......+|||||+|. +..+..-.+++.+.. .++--+++|.++
T Consensus 85 ~~~~~~~~~~~~~kviiide~~~--l~~~~~~~Ll~~le~-~~~~~~~il~~~ 134 (188)
T TIGR00678 85 VEFLSRTPQESGRRVVIIEDAER--MNEAAANALLKTLEE-PPPNTLFILITP 134 (188)
T ss_pred HHHHccCcccCCeEEEEEechhh--hCHHHHHHHHHHhcC-CCCCeEEEEEEC
Confidence 55565566678899999999995 334444445555544 333333444443
No 292
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.06 E-value=0.2 Score=49.87 Aligned_cols=24 Identities=42% Similarity=0.530 Sum_probs=19.3
Q ss_pred eEEEEecCCCchhchHHHHHHHHH
Q 001615 299 VLVVSGETGCGKTTQLPQFILEEE 322 (1044)
Q Consensus 299 ~vii~a~TGSGKTt~~p~~il~~~ 322 (1044)
.++|+|++|+|||+.+..++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH
Confidence 378999999999987777766654
No 293
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.04 E-value=0.3 Score=57.97 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=19.9
Q ss_pred HHHHcCCe---EEEEecCCCchhchHHHHHH
Q 001615 292 KAVAENQV---LVVSGETGCGKTTQLPQFIL 319 (1044)
Q Consensus 292 ~~i~~~~~---vii~a~TGSGKTt~~p~~il 319 (1044)
..+.+++. ++++||+|+||||.+-.+.-
T Consensus 28 ~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 28 NALKKNSISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred HHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455543 69999999999987765543
No 294
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.96 E-value=0.29 Score=54.92 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=36.1
Q ss_pred HHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccC
Q 001615 385 VLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT 439 (1044)
Q Consensus 385 ~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSAT 439 (1044)
-+.+.+...+....++++||||||. ++..-.-.+||.+..-.++..+|+.|..
T Consensus 100 ~l~~~~~~~p~~g~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 100 EISQKLALTPQYGIAQVVIVDPADA--INRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred HHHHHHhhCcccCCcEEEEeccHhh--hCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 3555555566677899999999995 4556666778866665445556665543
No 295
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.92 E-value=0.22 Score=60.78 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=30.9
Q ss_pred HHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcc
Q 001615 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (1044)
Q Consensus 386 Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmS 437 (1044)
|...+...|...+++++||||+|. +..+-.-.++|.+..-.+...+|+.+
T Consensus 107 l~~~~~~~p~~~~~KVvIIdev~~--Lt~~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 107 LRENVKYLPSRSRYKIFIIDEVHM--LSTNAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred HHHHHHhccccCCceEEEEEChhh--CCHHHHHHHHHHHHcCCCCeEEEEEe
Confidence 444444456678899999999995 44444455666665444444555433
No 296
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.92 E-value=0.29 Score=57.88 Aligned_cols=46 Identities=24% Similarity=0.156 Sum_probs=27.8
Q ss_pred CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHH
Q 001615 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVA 347 (1044)
Q Consensus 298 ~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva 347 (1044)
+.+++.|++|+|||..+ +.+...+... .++.+++++.. ..+...+.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~--~~~~~v~yv~~-~~f~~~~~ 187 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN--FSDLKVSYMSG-DEFARKAV 187 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh--CCCCeEEEEEH-HHHHHHHH
Confidence 45899999999999544 5555544332 22456776654 44444443
No 297
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=93.87 E-value=0.52 Score=56.29 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=25.4
Q ss_pred HHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcc
Q 001615 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP 426 (1044)
Q Consensus 386 Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~ 426 (1044)
++......|...++.++||||+|. +..+-...+++.+..
T Consensus 116 iie~a~~~P~~~~~KVvIIDEa~~--Ls~~a~naLLk~LEe 154 (507)
T PRK06645 116 IIESAEYKPLQGKHKIFIIDEVHM--LSKGAFNALLKTLEE 154 (507)
T ss_pred HHHHHHhccccCCcEEEEEEChhh--cCHHHHHHHHHHHhh
Confidence 444444556778899999999995 344444455555544
No 298
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.83 E-value=0.12 Score=64.32 Aligned_cols=108 Identities=18% Similarity=0.134 Sum_probs=69.9
Q ss_pred chHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEE
Q 001615 283 AFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETV 362 (1044)
Q Consensus 283 i~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~v 362 (1044)
+.+-|.+++... ...++|.|..|||||+.+..-+...+... .-...+||++..|+.+|..+.+|+.+.++..
T Consensus 3 Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~-~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~----- 74 (672)
T PRK10919 3 LNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGC-GYQARHIAAVTFTNKAAREMKERVAQTLGRK----- 74 (672)
T ss_pred CCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhc-CCCHHHeeeEechHHHHHHHHHHHHHHhCcc-----
Confidence 456788887653 45678889999999987766655544221 1234589999999999999999998876521
Q ss_pred EEEEeccccCCCCccEEEEchHHH-HHHHhcCC-CCC-ccceEEechhhh
Q 001615 363 GYQIRLESKRSAQTRLLFCTTGVL-LRQLVEDP-DLS-CVSHLLVDEIHE 409 (1044)
Q Consensus 363 gy~ir~~~~~~~~~~I~v~T~g~L-l~~l~~~~-~L~-~~~~lIiDEaHe 409 (1044)
....+.|.|---+ ++.|.... .+. .-.+-|+|+.+.
T Consensus 75 -----------~~~~v~i~TfHS~~~~iLr~~~~~~g~~~~~~i~d~~~~ 113 (672)
T PRK10919 75 -----------EARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTDQ 113 (672)
T ss_pred -----------cccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeeCCHHHH
Confidence 0134778886443 34443321 110 123567888774
No 299
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.83 E-value=0.42 Score=58.65 Aligned_cols=123 Identities=23% Similarity=0.252 Sum_probs=73.7
Q ss_pred CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcE--EEEEEecc--ccCC
Q 001615 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGET--VGYQIRLE--SKRS 373 (1044)
Q Consensus 298 ~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~--vgy~ir~~--~~~~ 373 (1044)
+.++|+|.=|=|||.++-+.++..... .+ ..+|+||.|+.+.+.++.+..-+-+. .+|.. |-+....+ ....
T Consensus 232 ~~~vlTAdRGRGKSA~lGi~~~~~~~~--~~-~~~iiVTAP~~~nv~~Lf~fa~~~l~-~lg~~~~v~~d~~g~~~~~~~ 307 (758)
T COG1444 232 RALVLTADRGRGKSAALGIALAAAARL--AG-SVRIIVTAPTPANVQTLFEFAGKGLE-FLGYKRKVAPDALGEIREVSG 307 (758)
T ss_pred ceEEEEcCCCCcHhHHHhHHHHHHHHh--cC-CceEEEeCCCHHHHHHHHHHHHHhHH-HhCCccccccccccceeeecC
Confidence 489999999999998877666332211 11 46899999999999988765544321 11111 11110000 0111
Q ss_pred CCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccCCCh
Q 001615 374 AQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINA 442 (1044)
Q Consensus 374 ~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSATl~~ 442 (1044)
+...|-|.+|.... ..-++||||||=- +..-++..+++ . .+.++||.|+..
T Consensus 308 ~~~~i~y~~P~~a~---------~~~DllvVDEAAa--IplplL~~l~~----~---~~rv~~sTTIhG 358 (758)
T COG1444 308 DGFRIEYVPPDDAQ---------EEADLLVVDEAAA--IPLPLLHKLLR----R---FPRVLFSTTIHG 358 (758)
T ss_pred CceeEEeeCcchhc---------ccCCEEEEehhhc--CChHHHHHHHh----h---cCceEEEeeecc
Confidence 23457777775443 1257899999984 45544444433 2 367889999843
No 300
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.76 E-value=0.34 Score=64.51 Aligned_cols=125 Identities=15% Similarity=0.112 Sum_probs=75.3
Q ss_pred CCchHHHHHHHHHHHc--CCeEEEEecCCCchhchHHHH--HHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCC
Q 001615 281 LPAFKMKAEFLKAVAE--NQVLVVSGETGCGKTTQLPQF--ILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGE 356 (1044)
Q Consensus 281 lpi~~~Q~~~i~~i~~--~~~vii~a~TGSGKTt~~p~~--il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~ 356 (1044)
..+++-|.+++..++. ++.++|+|..|+||||.+-.. ++..+. ...+..|+.++||--+|..+.+ .+.
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~---e~~g~~V~glAPTgkAa~~L~e-----~Gi 905 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLP---ESERPRVVGLGPTHRAVGEMRS-----AGV 905 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHh---hccCceEEEEechHHHHHHHHH-----hCc
Confidence 3678999999999985 489999999999999875322 222221 1224578889999888766632 121
Q ss_pred CCCcEEEEEEeccccCCCCccEEEEchHHHHHH-----HhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcc
Q 001615 357 NLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQ-----LVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDL 431 (1044)
Q Consensus 357 ~~g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~-----l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~ 431 (1044)
. . .|-..||.. ...+......++|||||+=. ++...+..+++.+.. ...
T Consensus 906 ~-A---------------------~TIasfL~~~~~~~~~~~~~~~~~~llIVDEASM--V~~~~m~~ll~~~~~--~ga 959 (1623)
T PRK14712 906 D-A---------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESSM--VGNTDMARAYALIAA--GGG 959 (1623)
T ss_pred h-H---------------------hhHHHHhccccchhhcccCCCCCCcEEEEEcccc--ccHHHHHHHHHhhhh--CCC
Confidence 1 0 111111111 00111234568999999983 555545455554422 356
Q ss_pred cEEEcccC
Q 001615 432 RLILMSAT 439 (1044)
Q Consensus 432 qiilmSAT 439 (1044)
|+|++-=+
T Consensus 960 rvVLVGD~ 967 (1623)
T PRK14712 960 RAVASGDT 967 (1623)
T ss_pred EEEEEcch
Confidence 88887655
No 301
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.74 E-value=0.32 Score=56.10 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=18.0
Q ss_pred CeEEEEecCCCchhchHHHHHHHHH
Q 001615 298 QVLVVSGETGCGKTTQLPQFILEEE 322 (1044)
Q Consensus 298 ~~vii~a~TGSGKTt~~p~~il~~~ 322 (1044)
..++|+||+|+|||+.+ ..+++.+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 57999999999999655 4444443
No 302
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.69 E-value=0.24 Score=59.28 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=28.2
Q ss_pred HHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEE
Q 001615 387 LRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLIL 435 (1044)
Q Consensus 387 l~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiil 435 (1044)
...+...+...+..+|||||+|. +..+.+..+++.+....+...+|+
T Consensus 105 ~~~~~~~p~~~~~kVVIIDEad~--ls~~a~naLLk~LEep~~~t~~Il 151 (504)
T PRK14963 105 REKVLLAPLRGGRKVYILDEAHM--MSKSAFNALLKTLEEPPEHVIFIL 151 (504)
T ss_pred HHHHhhccccCCCeEEEEECccc--cCHHHHHHHHHHHHhCCCCEEEEE
Confidence 33344445667889999999994 344455556666554333334443
No 303
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.67 E-value=0.34 Score=54.16 Aligned_cols=113 Identities=14% Similarity=0.195 Sum_probs=58.0
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCC
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQ 375 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~ 375 (1044)
.++.+++.|++|+|||..+.-. ...+... +. ...++..| .++..+. ..... +
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Ai-a~~l~~~--g~-~v~~~~~~--~l~~~lk----~~~~~------------------~ 206 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAI-ANELAKK--GV-SSTLLHFP--EFIRELK----NSISD------------------G 206 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHH-HHHHHHc--CC-CEEEEEHH--HHHHHHH----HHHhc------------------C
Confidence 4568999999999999655433 3333322 22 12344444 3333332 22110 0
Q ss_pred ccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHH-HHHHHHcccC-CcccEEEcccCCChHHHHhhh
Q 001615 376 TRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLL-IILRDLLPRR-PDLRLILMSATINADLFSKYF 449 (1044)
Q Consensus 376 ~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll-~~lk~~~~~~-~~~qiilmSATl~~~~~~~~f 449 (1044)
+...+++. +.++++|||||+.--. .+++.. .++-.++..| ..-+-.++|.-++.+.+.+.|
T Consensus 207 ------~~~~~l~~------l~~~dlLiIDDiG~e~-~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 207 ------SVKEKIDA------VKEAPVLMLDDIGAEQ-MSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHL 269 (306)
T ss_pred ------cHHHHHHH------hcCCCEEEEecCCCcc-ccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH
Confidence 11223333 3688999999998322 222222 2333333222 123455666667777777666
No 304
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.67 E-value=0.31 Score=56.44 Aligned_cols=52 Identities=13% Similarity=0.219 Sum_probs=31.7
Q ss_pred HHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccCC
Q 001615 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATI 440 (1044)
Q Consensus 386 Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSATl 440 (1044)
+.+.+...+...+.+++||||+|. ++....-.++|.+. ..|+-.++++.||-
T Consensus 105 l~~~~~~~p~~~~~kViiIDead~--m~~~aanaLLk~LE-ep~~~~~fIL~a~~ 156 (394)
T PRK07940 105 LVTIAARRPSTGRWRIVVIEDADR--LTERAANALLKAVE-EPPPRTVWLLCAPS 156 (394)
T ss_pred HHHHHHhCcccCCcEEEEEechhh--cCHHHHHHHHHHhh-cCCCCCeEEEEECC
Confidence 444444455667889999999994 34444455666554 34444556666653
No 305
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.66 E-value=0.21 Score=58.97 Aligned_cols=38 Identities=26% Similarity=0.318 Sum_probs=24.2
Q ss_pred CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcc
Q 001615 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQP 338 (1044)
Q Consensus 298 ~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P 338 (1044)
+.+++.|++|+|||..+ +.+...+... .++.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~--~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQN--EPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHh--CCCCeEEEEEH
Confidence 35999999999999543 4444444332 22456777654
No 306
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.64 E-value=0.19 Score=58.52 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=25.3
Q ss_pred CCchHHHHHHHHHHHc--CCeEEEEecCCCchhchHHHHH
Q 001615 281 LPAFKMKAEFLKAVAE--NQVLVVSGETGCGKTTQLPQFI 318 (1044)
Q Consensus 281 lpi~~~Q~~~i~~i~~--~~~vii~a~TGSGKTt~~p~~i 318 (1044)
|..++.+.+.+..+.+ +--++++|||||||||..-..+
T Consensus 240 Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L 279 (500)
T COG2804 240 LGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAAL 279 (500)
T ss_pred hCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 3445556556655544 3478899999999997654433
No 307
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.61 E-value=0.076 Score=51.05 Aligned_cols=16 Identities=38% Similarity=0.617 Sum_probs=13.3
Q ss_pred EEEEecCCCchhchHH
Q 001615 300 LVVSGETGCGKTTQLP 315 (1044)
Q Consensus 300 vii~a~TGSGKTt~~p 315 (1044)
+++.||+|+|||+.+-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 6899999999996543
No 308
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.60 E-value=0.31 Score=55.06 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=18.0
Q ss_pred HHHHHHcCC---eEEEEecCCCchhchHHHH
Q 001615 290 FLKAVAENQ---VLVVSGETGCGKTTQLPQF 317 (1044)
Q Consensus 290 ~i~~i~~~~---~vii~a~TGSGKTt~~p~~ 317 (1044)
+...+.+++ .++++||+|+|||+.+-.+
T Consensus 33 l~~~~~~~~~~~~lll~G~~G~GKT~la~~l 63 (316)
T PHA02544 33 FKSIVKKGRIPNMLLHSPSPGTGKTTVAKAL 63 (316)
T ss_pred HHHHHhcCCCCeEEEeeCcCCCCHHHHHHHH
Confidence 334444443 4555999999999765433
No 309
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=93.56 E-value=0.32 Score=49.53 Aligned_cols=125 Identities=17% Similarity=0.220 Sum_probs=69.9
Q ss_pred CCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCCc
Q 001615 297 NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQT 376 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~~ 376 (1044)
++..+++||-.||||+-+++-+...... +.++++.-|.-. .| .+. ..|...+.. ...
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~-----g~~v~vfkp~iD------~R----~~~---~~V~Sr~G~-----~~~ 60 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEA-----GMKVLVFKPAID------TR----YGV---GKVSSRIGL-----SSE 60 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHc-----CCeEEEEecccc------cc----ccc---ceeeeccCC-----ccc
Confidence 5567899999999999777666554432 447777666311 11 110 011111111 112
Q ss_pred cEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccCCChHHHHhhhC
Q 001615 377 RLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINADLFSKYFG 450 (1044)
Q Consensus 377 ~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSATl~~~~~~~~f~ 450 (1044)
-++|-.+.-+...+........+.+|.||||+= ..+-+...+..+.. ++-+-+|-+.++.+-..+-|.
T Consensus 61 A~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF---~~~~~v~~l~~lad---~lgi~Vi~~GL~~DFrgepFe 128 (201)
T COG1435 61 AVVIPSDTDIFDEIAALHEKPPVDCVLIDEAQF---FDEELVYVLNELAD---RLGIPVICYGLDTDFRGEPFE 128 (201)
T ss_pred ceecCChHHHHHHHHhcccCCCcCEEEEehhHh---CCHHHHHHHHHHHh---hcCCEEEEeccccccccCCCc
Confidence 355556666777776655434489999999993 33333333444433 234556677776655444443
No 310
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.53 E-value=0.19 Score=59.20 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=22.8
Q ss_pred CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEc
Q 001615 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQ 337 (1044)
Q Consensus 298 ~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~ 337 (1044)
+.+++.|++|+|||+.+ +.+...+... +.+++++.
T Consensus 142 npl~L~G~~G~GKTHLl-~Ai~~~l~~~----~~~v~yi~ 176 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLM-QAAVHALRES----GGKILYVR 176 (445)
T ss_pred ceEEEEcCCCCCHHHHH-HHHHHHHHHc----CCCEEEee
Confidence 46899999999999533 3444444332 34677764
No 311
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.53 E-value=0.35 Score=56.57 Aligned_cols=135 Identities=13% Similarity=0.114 Sum_probs=76.8
Q ss_pred CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHH-HHHHHHHHHHHHhCCCCCcEEEEEEecc--c-cCC
Q 001615 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRI-SAISVAARVSSERGENLGETVGYQIRLE--S-KRS 373 (1044)
Q Consensus 298 ~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~-la~qva~rv~~~~~~~~g~~vgy~ir~~--~-~~~ 373 (1044)
+..++.|..|||||..+.+.++..++.. ..+.+++|+-|+.- +...+...+...+.. .|...-+..... . ...
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~--~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~-~g~~~~~~~~~~~~~i~~~ 78 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAIN--KKQQNILAARKVQNSIRDSVFKDIENLLSI-EGINYEFKKSKSSMEIKIL 78 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhc--CCCcEEEEEehhhhHHHHHHHHHHHHHHHH-cCChhheeecCCccEEEec
Confidence 4678999999999998888888777653 13578999988877 666667666544332 222212221111 0 011
Q ss_pred C-CccEEEEch-HHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccCCCh
Q 001615 374 A-QTRLLFCTT-GVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINA 442 (1044)
Q Consensus 374 ~-~~~I~v~T~-g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSATl~~ 442 (1044)
. +..|+|..- .--.+ +. ....+..+.+|||.+. ..+.+..++..+.. ......|++|.|++.
T Consensus 79 ~~g~~i~f~g~~d~~~~-ik---~~~~~~~~~idEa~~~--~~~~~~~l~~rlr~-~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 79 NTGKKFIFKGLNDKPNK-LK---SGAGIAIIWFEEASQL--TFEDIKELIPRLRE-TGGKKFIIFSSNPES 142 (396)
T ss_pred CCCeEEEeecccCChhH-hh---Ccceeeeehhhhhhhc--CHHHHHHHHHHhhc-cCCccEEEEEcCcCC
Confidence 2 455666443 11111 11 2344799999999974 34455555544322 112124677888643
No 312
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.49 E-value=0.12 Score=58.14 Aligned_cols=53 Identities=25% Similarity=0.312 Sum_probs=36.2
Q ss_pred HHHHHH-HHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHH
Q 001615 287 KAEFLK-AVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRIS 342 (1044)
Q Consensus 287 Q~~~i~-~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~l 342 (1044)
|.+.+. ++..+++++|+|+|||||||.+ ..++..... ..+..+++++..+.++
T Consensus 137 ~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~--~~~~~rivtIEd~~El 190 (319)
T PRK13894 137 QREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVI--QDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhh--cCCCceEEEEcCCCcc
Confidence 444444 5778899999999999999655 344443321 1234588888888876
No 313
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.47 E-value=0.11 Score=53.49 Aligned_cols=47 Identities=23% Similarity=0.210 Sum_probs=30.8
Q ss_pred eEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHH
Q 001615 299 VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVS 351 (1044)
Q Consensus 299 ~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~ 351 (1044)
.++|.|++|+|||+...+++.+.+.. + .+++++. +.+.+.++.+++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~---g--~~v~~~s-~e~~~~~~~~~~~ 47 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR---G--EPGLYVT-LEESPEELIENAE 47 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC---C--CcEEEEE-CCCCHHHHHHHHH
Confidence 37899999999999999888886632 2 2344442 3344555555543
No 314
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.41 E-value=0.43 Score=56.13 Aligned_cols=68 Identities=22% Similarity=0.269 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCC-CCcEEEEEcccHHHHHHHHHHHHHHhC
Q 001615 286 MKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRG-ADCNIICTQPRRISAISVAARVSSERG 355 (1044)
Q Consensus 286 ~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~-~~~~ilv~~P~r~la~qva~rv~~~~~ 355 (1044)
-|.+||.. ..++.+||+|..||||||.+++=+.-.++..... ....|+|+.|.|....-++..+ -++|
T Consensus 216 EQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VL-PeLG 284 (747)
T COG3973 216 EQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVL-PELG 284 (747)
T ss_pred hHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhc-hhhc
Confidence 44554432 3577899999999999998887666555433211 2234999999999987765433 3444
No 315
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.30 E-value=0.084 Score=58.16 Aligned_cols=48 Identities=33% Similarity=0.376 Sum_probs=33.1
Q ss_pred HHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHH
Q 001615 290 FLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRIS 342 (1044)
Q Consensus 290 ~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~l 342 (1044)
+...++.+.+++|+|+|||||||..-.+ ++..-.. ..+|++++...|+
T Consensus 120 l~~~v~~~~~ili~G~tGSGKTT~l~al-l~~i~~~----~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 120 LRSAVRGRGNILISGPTGSGKTTLLNAL-LEEIPPE----DERIVTIEDPPEL 167 (270)
T ss_dssp HHHCHHTTEEEEEEESTTSSHHHHHHHH-HHHCHTT----TSEEEEEESSS-S
T ss_pred HhhccccceEEEEECCCccccchHHHHH-hhhcccc----ccceEEeccccce
Confidence 3334567889999999999999887444 4443221 3588888877665
No 316
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.30 E-value=0.56 Score=63.39 Aligned_cols=128 Identities=15% Similarity=0.106 Sum_probs=77.5
Q ss_pred CCCchHHHHHHHHHHHc--CCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 001615 280 KLPAFKMKAEFLKAVAE--NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (1044)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~--~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~ 357 (1044)
...+.+-|.+++..++. ++.++|+|..|+||||.+-. +++.+.......+..|+.++||--+|..+.+ .+..
T Consensus 965 ~~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~-v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e-----~Gi~ 1038 (1747)
T PRK13709 965 MEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRA-VMSAVNTLPESERPRVVGLGPTHRAVGEMRS-----AGVD 1038 (1747)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHH-HHHHHHHhhcccCceEEEECCcHHHHHHHHh-----cCcc
Confidence 34688999999999887 47999999999999976543 2222211111224578889999888765531 1210
Q ss_pred CCcEEEEEEeccccCCCCccEEEEchHHHHHHHh----c-CCCCCccceEEechhhhccchhHHHHHHHHHHcccCCccc
Q 001615 358 LGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLV----E-DPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLR 432 (1044)
Q Consensus 358 ~g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~----~-~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~q 432 (1044)
-.|--.|+.... . +......++|||||+=. +++..+..+++.+.. ...|
T Consensus 1039 ----------------------A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSM--v~~~~m~~Ll~~~~~--~gar 1092 (1747)
T PRK13709 1039 ----------------------AQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSM--VGNTDMARAYALIAA--GGGR 1092 (1747)
T ss_pred ----------------------hhhHHHHhcccccccccccCCCCCCcEEEEEcccc--ccHHHHHHHHHhhhc--CCCE
Confidence 012222222110 0 11223458999999983 666666666665532 2468
Q ss_pred EEEcccC
Q 001615 433 LILMSAT 439 (1044)
Q Consensus 433 iilmSAT 439 (1044)
+|++-=+
T Consensus 1093 vVLVGD~ 1099 (1747)
T PRK13709 1093 AVSSGDT 1099 (1747)
T ss_pred EEEecch
Confidence 8877644
No 317
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.30 E-value=0.1 Score=59.05 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=34.1
Q ss_pred HHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHH
Q 001615 290 FLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISA 343 (1044)
Q Consensus 290 ~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la 343 (1044)
+..++..+++++|+|+|||||||.+-- ++..+ ....+++.+..+.|+.
T Consensus 155 l~~~v~~~~nilI~G~tGSGKTTll~a-Ll~~i-----~~~~rivtiEd~~El~ 202 (344)
T PRK13851 155 LHACVVGRLTMLLCGPTGSGKTTMSKT-LISAI-----PPQERLITIEDTLELV 202 (344)
T ss_pred HHHHHHcCCeEEEECCCCccHHHHHHH-HHccc-----CCCCCEEEECCCcccc
Confidence 444567889999999999999976533 33332 2245788888888763
No 318
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=93.29 E-value=0.13 Score=63.31 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=46.5
Q ss_pred chHHHHHHHHH-HHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHH
Q 001615 283 AFKMKAEFLKA-VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSE 353 (1044)
Q Consensus 283 i~~~Q~~~i~~-i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~ 353 (1044)
+..-|.+++-. +....-.+|.|-+|+||||.+...|--.... +.+||.+.=|-.++..+-.++..+
T Consensus 670 LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~-----gkkVLLtsyThsAVDNILiKL~~~ 736 (1100)
T KOG1805|consen 670 LNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVAL-----GKKVLLTSYTHSAVDNILIKLKGF 736 (1100)
T ss_pred cCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHc-----CCeEEEEehhhHHHHHHHHHHhcc
Confidence 34456555555 4556678999999999998877655443322 458999999999888886666543
No 319
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.29 E-value=0.35 Score=66.90 Aligned_cols=125 Identities=15% Similarity=0.123 Sum_probs=78.0
Q ss_pred CCCchHHHHHHHHHHHcC--CeEEEEecCCCchhchHH---HHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHh
Q 001615 280 KLPAFKMKAEFLKAVAEN--QVLVVSGETGCGKTTQLP---QFILEEELSSLRGADCNIICTQPRRISAISVAARVSSER 354 (1044)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~--~~vii~a~TGSGKTt~~p---~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~ 354 (1044)
...+++-|.+++..+..+ +.++|+|..|+||||.+- ..+.+.+ .. .+.+|+.++||-.+|..+.+ .
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~-~~---~g~~v~glApT~~Aa~~L~~-----~ 1087 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAF-ES---EQLQVIGLAPTHEAVGELKS-----A 1087 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHH-Hh---cCCeEEEEeChHHHHHHHHh-----c
Confidence 356789999999998754 788999999999998772 2333332 21 24689999999888766631 1
Q ss_pred CCCCCcEEEEEEeccccCCCCccEEEEchHHHHHH---HhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcc
Q 001615 355 GENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQ---LVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDL 431 (1044)
Q Consensus 355 ~~~~g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~---l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~ 431 (1044)
+.. . .|-..|+.. ....+.+...++|||||+=. +++..+..+++.+.. +..
T Consensus 1088 g~~-a---------------------~Ti~s~l~~~~~~~~~~~~~~~~v~ivDEasM--v~~~~~~~l~~~~~~--~~a 1141 (1960)
T TIGR02760 1088 GVQ-A---------------------QTLDSFLTDISLYRNSGGDFRNTLFILDESSM--VSNFQLTHATELVQK--SGS 1141 (1960)
T ss_pred CCc-h---------------------HhHHHHhcCcccccccCCCCcccEEEEEcccc--ccHHHHHHHHHhccC--CCC
Confidence 211 0 011122210 01122355678999999983 666666666655433 346
Q ss_pred cEEEcccC
Q 001615 432 RLILMSAT 439 (1044)
Q Consensus 432 qiilmSAT 439 (1044)
|+|++-=+
T Consensus 1142 k~vlvGD~ 1149 (1960)
T TIGR02760 1142 RAVSLGDI 1149 (1960)
T ss_pred EEEEeCCh
Confidence 77776533
No 320
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.27 E-value=0.44 Score=55.64 Aligned_cols=51 Identities=18% Similarity=0.286 Sum_probs=28.8
Q ss_pred HHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccC
Q 001615 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT 439 (1044)
Q Consensus 386 Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSAT 439 (1044)
+...+...|...+..+|||||+|. +..+-.-.+++.+.. .++.-++++.++
T Consensus 115 l~~~~~~~p~~~~~kvvIIdea~~--l~~~~~~~LLk~LEe-p~~~t~~Il~t~ 165 (397)
T PRK14955 115 LRENVRYGPQKGRYRVYIIDEVHM--LSIAAFNAFLKTLEE-PPPHAIFIFATT 165 (397)
T ss_pred HHHHHhhchhcCCeEEEEEeChhh--CCHHHHHHHHHHHhc-CCCCeEEEEEeC
Confidence 344455557778899999999995 233333344555433 333333444333
No 321
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.26 E-value=0.29 Score=55.42 Aligned_cols=59 Identities=15% Similarity=0.101 Sum_probs=37.6
Q ss_pred EEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEccc
Q 001615 378 LLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSA 438 (1044)
Q Consensus 378 I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSA 438 (1044)
|.|-.---|.+.+...+....++++|||+||. ++..-.-.+||.+..-.++.-+|+.|.
T Consensus 112 I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t~ 170 (342)
T PRK06964 112 IKIEQVRALLDFCGVGTHRGGARVVVLYPAEA--LNVAAANALLKTLEEPPPGTVFLLVSA 170 (342)
T ss_pred cCHHHHHHHHHHhccCCccCCceEEEEechhh--cCHHHHHHHHHHhcCCCcCcEEEEEEC
Confidence 44444444666666666678899999999995 455556667777765444444444443
No 322
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.26 E-value=0.61 Score=47.47 Aligned_cols=46 Identities=17% Similarity=0.329 Sum_probs=28.0
Q ss_pred CccceEEechhhhccchhHHHHHHHHHHcc-cCCcccEEEcccCCChH
Q 001615 397 SCVSHLLVDEIHERGMNEDFLLIILRDLLP-RRPDLRLILMSATINAD 443 (1044)
Q Consensus 397 ~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~-~~~~~qiilmSATl~~~ 443 (1044)
.++++||+|.......+.+.+..+ +.+.. ..++--++.++|+...+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l-~~l~~~~~~~~~~lVv~~~~~~~ 127 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEEL-KKIKRVVKPDEVLLVVDAMTGQD 127 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHH-HHHHhhcCCCeEEEEEECCCChH
Confidence 468899999999433444444333 33332 34666777788865444
No 323
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.20 E-value=0.34 Score=59.49 Aligned_cols=50 Identities=18% Similarity=0.383 Sum_probs=29.2
Q ss_pred HHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccC
Q 001615 387 LRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT 439 (1044)
Q Consensus 387 l~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSAT 439 (1044)
...+...+.+.+..+|||||+|. +..+-.-.+++.+....+.. ++++.+|
T Consensus 109 i~~~~~~p~~~~~kVvIIDEa~~--L~~~a~naLLk~LEepp~~t-v~Il~t~ 158 (585)
T PRK14950 109 IERVQFRPALARYKVYIIDEVHM--LSTAAFNALLKTLEEPPPHA-IFILATT 158 (585)
T ss_pred HHHHhhCcccCCeEEEEEeChHh--CCHHHHHHHHHHHhcCCCCe-EEEEEeC
Confidence 34444456678899999999995 34444445566554433333 3333333
No 324
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.19 E-value=0.29 Score=55.36 Aligned_cols=52 Identities=25% Similarity=0.319 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcc
Q 001615 384 GVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (1044)
Q Consensus 384 g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmS 437 (1044)
.-+.+.....+......+|||||||. +..|-.-.++|.+....++..+|+.+
T Consensus 95 r~~~~~~~~~~~~~~~kviiidead~--mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 95 RELAEFLSESPLEGGYKVVIIDEADK--LTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred HHHHHHhccCCCCCCceEEEeCcHHH--HhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 33444443344457899999999995 45565666666655544455555444
No 325
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=93.19 E-value=0.14 Score=56.50 Aligned_cols=56 Identities=23% Similarity=0.279 Sum_probs=44.1
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcc
Q 001615 280 KLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQP 338 (1044)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P 338 (1044)
..|.++-|..-++++.++..++..||-|+|||+...-...+.+. .+.-.+||.+-|
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~---~~~v~rIiLtRP 181 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALG---AGQVRRIILTRP 181 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhh---hcccceeeecCc
Confidence 35788999999999999999999999999999655544445442 233458999888
No 326
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.16 E-value=0.24 Score=60.28 Aligned_cols=39 Identities=15% Similarity=0.263 Sum_probs=26.1
Q ss_pred HHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcc
Q 001615 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP 426 (1044)
Q Consensus 386 Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~ 426 (1044)
+...+...|...++.++||||+|. +..+-.-.+++.+..
T Consensus 107 i~~~v~~~p~~~~~kViIIDE~~~--Lt~~a~naLLKtLEe 145 (559)
T PRK05563 107 IRDKVKYAPSEAKYKVYIIDEVHM--LSTGAFNALLKTLEE 145 (559)
T ss_pred HHHHHhhCcccCCeEEEEEECccc--CCHHHHHHHHHHhcC
Confidence 444444456678899999999995 444555566666544
No 327
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.16 E-value=0.13 Score=53.79 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=14.7
Q ss_pred eEEEEecCCCchhchHH
Q 001615 299 VLVVSGETGCGKTTQLP 315 (1044)
Q Consensus 299 ~vii~a~TGSGKTt~~p 315 (1044)
.+++.||+|+||||.+-
T Consensus 52 h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred eEEEECCCccchhHHHH
Confidence 69999999999997553
No 328
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.08 E-value=0.11 Score=58.61 Aligned_cols=48 Identities=29% Similarity=0.266 Sum_probs=33.9
Q ss_pred HHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHH
Q 001615 290 FLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISA 343 (1044)
Q Consensus 290 ~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la 343 (1044)
+..++..+++++|+|+|||||||.+- .++..+ ...-+|+++.-+.|+.
T Consensus 153 L~~~v~~~~nili~G~tgSGKTTll~-aL~~~i-----p~~~ri~tiEd~~El~ 200 (332)
T PRK13900 153 LEHAVISKKNIIISGGTSTGKTTFTN-AALREI-----PAIERLITVEDAREIV 200 (332)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHH-HHHhhC-----CCCCeEEEecCCCccc
Confidence 44456788999999999999998663 344433 1235788887777764
No 329
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.07 E-value=1.1 Score=49.64 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=16.9
Q ss_pred CCeEEEEecCCCchhchHHHH
Q 001615 297 NQVLVVSGETGCGKTTQLPQF 317 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~p~~ 317 (1044)
+..+++.||+|||||+.+-.+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~i 78 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRM 78 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHH
Confidence 457999999999999766443
No 330
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.02 E-value=0.21 Score=60.22 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=28.9
Q ss_pred HHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcc
Q 001615 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (1044)
Q Consensus 386 Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmS 437 (1044)
+.+.+...|...+..++||||||. +..+-.-.+++.+-...+...+|+++
T Consensus 107 Ii~~~~~~P~~~~~KVIIIDEad~--Lt~~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 107 IIDNINYLPTTFKYKVYIIDEAHM--LSTSAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred HHHHHHhchhhCCcEEEEEechHh--CCHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 444444455666789999999994 33333445555554433344444444
No 331
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.86 E-value=0.47 Score=50.45 Aligned_cols=104 Identities=20% Similarity=0.224 Sum_probs=53.9
Q ss_pred eEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCCccE
Q 001615 299 VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTRL 378 (1044)
Q Consensus 299 ~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~~~I 378 (1044)
-++|.|++|+|||. ..+.+...+.... ++.+|+++.. .+....+..-+..
T Consensus 36 ~l~l~G~~G~GKTH-LL~Ai~~~~~~~~--~~~~v~y~~~-~~f~~~~~~~~~~-------------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTH-LLQAIANEAQKQH--PGKRVVYLSA-EEFIREFADALRD-------------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHH-HHHHHHHHHHHHC--TTS-EEEEEH-HHHHHHHHHHHHT--------------------------
T ss_pred ceEEECCCCCCHHH-HHHHHHHHHHhcc--ccccceeecH-HHHHHHHHHHHHc--------------------------
Confidence 58999999999995 4555555544321 2346666533 2222222222211
Q ss_pred EEEchHHHHHHHhcCCCCCccceEEechhhhccch---hHHHHHHHHHHcccCCcccEEEcccCCCh
Q 001615 379 LFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMN---EDFLLIILRDLLPRRPDLRLILMSATINA 442 (1044)
Q Consensus 379 ~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~---~d~ll~~lk~~~~~~~~~qiilmSATl~~ 442 (1044)
.....+.+. +..+++||||.+|.-.-. .+.+..++..+... +-++|+.|...|.
T Consensus 86 --~~~~~~~~~------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--~k~li~ts~~~P~ 142 (219)
T PF00308_consen 86 --GEIEEFKDR------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--GKQLILTSDRPPS 142 (219)
T ss_dssp --TSHHHHHHH------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--TSEEEEEESS-TT
T ss_pred --ccchhhhhh------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--CCeEEEEeCCCCc
Confidence 011223333 357899999999953222 23444444444433 3466666655443
No 332
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=92.79 E-value=0.56 Score=55.69 Aligned_cols=114 Identities=17% Similarity=0.193 Sum_probs=91.4
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCc-EEEEeecccccccCCCCe
Q 001615 552 EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKR-KIVLATNIAESSITIDDV 630 (1044)
Q Consensus 552 ~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~-kIlvaTniae~GidIp~V 630 (1044)
..+.++|+|..-.+.++-+.++|.. .++.-+-|.|+....+|..+..+|....+ -.|++|-...-||++-..
T Consensus 1042 aegHRvL~yfQMTkM~dl~EdYl~y-------r~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAA 1114 (1185)
T KOG0388|consen 1042 AEGHRVLMYFQMTKMIDLIEDYLVY-------RGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAA 1114 (1185)
T ss_pred cCCceEEehhHHHHHHHHHHHHHHh-------hccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccccccccc
Confidence 4567999999998888888888875 56778889999999999999999987544 578999999999999999
Q ss_pred EEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCCCCcEEEEecChhhH
Q 001615 631 VYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRIIH 687 (1044)
Q Consensus 631 ~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~~G~c~~L~t~~~~ 687 (1044)
+.||-|+--- +|... .++.-|+-|-|-++.=..|+|.++..-
T Consensus 1115 DTViFYdSDW----NPT~D-----------~QAMDRAHRLGQTrdvtvyrl~~rgTv 1156 (1185)
T KOG0388|consen 1115 DTVIFYDSDW----NPTAD-----------QQAMDRAHRLGQTRDVTVYRLITRGTV 1156 (1185)
T ss_pred ceEEEecCCC----Ccchh-----------hHHHHHHHhccCccceeeeeecccccH
Confidence 9999865332 32211 256777788888888899999998643
No 333
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.75 E-value=0.51 Score=56.56 Aligned_cols=43 Identities=19% Similarity=0.435 Sum_probs=29.2
Q ss_pred CCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcc
Q 001615 393 DPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (1044)
Q Consensus 393 ~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmS 437 (1044)
.|....+.++||||||. +..+-.-.+++.+....+...+|+.+
T Consensus 112 ~P~~~~~KVvIIDEad~--Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 112 KPSMARFKIFIIDEVHM--LTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CcccCCeEEEEEECccc--CCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 45667899999999995 45555556666665554455555544
No 334
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=92.75 E-value=0.58 Score=57.78 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccC
Q 001615 385 VLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT 439 (1044)
Q Consensus 385 ~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSAT 439 (1044)
.|...+...|...++.++||||||. +..+-.-.+++.+....+...+|+ .+|
T Consensus 105 eLie~~~~~P~~g~~KV~IIDEa~~--LT~~A~NALLKtLEEPP~~tifIL-aTt 156 (725)
T PRK07133 105 ELIENVKNLPTQSKYKIYIIDEVHM--LSKSAFNALLKTLEEPPKHVIFIL-ATT 156 (725)
T ss_pred HHHHHHHhchhcCCCEEEEEEChhh--CCHHHHHHHHHHhhcCCCceEEEE-EcC
Confidence 3455555566778999999999994 344445556666544333333443 334
No 335
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=92.74 E-value=0.14 Score=56.71 Aligned_cols=52 Identities=27% Similarity=0.278 Sum_probs=34.3
Q ss_pred HHHHHHHHH-HcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHH
Q 001615 286 MKAEFLKAV-AENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISA 343 (1044)
Q Consensus 286 ~Q~~~i~~i-~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la 343 (1044)
-+.+++..+ ....+++|+|.|||||||.+--+... ....-+|||+.-|.||.
T Consensus 161 ~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~------i~~~eRvItiEDtaELq 213 (355)
T COG4962 161 RAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGF------IDSDERVITIEDTAELQ 213 (355)
T ss_pred HHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhc------CCCcccEEEEeehhhhc
Confidence 455555544 45559999999999999754322221 12233899999988874
No 336
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=92.72 E-value=0.39 Score=59.98 Aligned_cols=122 Identities=13% Similarity=0.049 Sum_probs=71.2
Q ss_pred hHHHHHHHHHH----HcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHh-CCCC
Q 001615 284 FKMKAEFLKAV----AENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSER-GENL 358 (1044)
Q Consensus 284 ~~~Q~~~i~~i----~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~-~~~~ 358 (1044)
..||...++.+ .+|-+-|+.-+-|-|||.|..-++...+...+ .-+.=||++||-.+-. +-..+++.. +..+
T Consensus 617 ReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeeg--nWGPHLIVVpTsviLn-WEMElKRwcPglKI 693 (1958)
T KOG0391|consen 617 REYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEG--NWGPHLIVVPTSVILN-WEMELKRWCPGLKI 693 (1958)
T ss_pred HHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhccc--CCCCceEEeechhhhh-hhHHHhhhCCcceE
Confidence 46888888765 35668899999999999888766655544332 2233455568866543 222332221 1111
Q ss_pred CcEEEEE-----EeccccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhh
Q 001615 359 GETVGYQ-----IRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHE 409 (1044)
Q Consensus 359 g~~vgy~-----ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHe 409 (1044)
-...|-. -|.........+|.|+....+++-+.. ..-.+..|+||||+|.
T Consensus 694 LTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A-FkrkrWqyLvLDEaqn 748 (1958)
T KOG0391|consen 694 LTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA-FKRKRWQYLVLDEAQN 748 (1958)
T ss_pred eeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH-HHhhccceeehhhhhh
Confidence 1122221 122223334568888888776665432 1335788999999994
No 337
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=92.71 E-value=0.22 Score=40.76 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=33.8
Q ss_pred cceeeecccCChhhHHHHHHHHHhcCceeeeecCCCc
Q 001615 133 EQEMIIKRKFSRADQQTLADMAHQLGLHFHAYNKGKA 169 (1044)
Q Consensus 133 ~~e~~~~~~~s~~e~~~i~~~a~~~g~~~~~~~~~~~ 169 (1044)
..++.|+++++..++..+|.+|.++|+...+.|.|..
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~~s~G~g~~ 53 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNHVSDGTGER 53 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCceEEeCCCce
Confidence 5799999999999999999999999999998887654
No 338
>PLN03025 replication factor C subunit; Provisional
Probab=92.60 E-value=0.57 Score=52.99 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=16.7
Q ss_pred CeEEEEecCCCchhchHHHHH
Q 001615 298 QVLVVSGETGCGKTTQLPQFI 318 (1044)
Q Consensus 298 ~~vii~a~TGSGKTt~~p~~i 318 (1044)
..++++||+|+|||+.+-.+.
T Consensus 35 ~~lll~Gp~G~GKTtla~~la 55 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALA 55 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999997665443
No 339
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.60 E-value=0.49 Score=58.10 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=28.2
Q ss_pred HHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEE
Q 001615 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLIL 435 (1044)
Q Consensus 386 Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiil 435 (1044)
++..+...+....+.+|||||||. +..+-.-.++|.+..-.....+|+
T Consensus 109 ii~~a~~~p~~~~~KViIIDEad~--Lt~~a~naLLK~LEePp~~tvfIL 156 (620)
T PRK14948 109 LIERAQFAPVQARWKVYVIDECHM--LSTAAFNALLKTLEEPPPRVVFVL 156 (620)
T ss_pred HHHHHhhChhcCCceEEEEECccc--cCHHHHHHHHHHHhcCCcCeEEEE
Confidence 344444455567889999999995 344445556666654333333333
No 340
>PHA00729 NTP-binding motif containing protein
Probab=92.60 E-value=0.36 Score=50.99 Aligned_cols=18 Identities=39% Similarity=0.503 Sum_probs=15.2
Q ss_pred eEEEEecCCCchhchHHH
Q 001615 299 VLVVSGETGCGKTTQLPQ 316 (1044)
Q Consensus 299 ~vii~a~TGSGKTt~~p~ 316 (1044)
+++|.|++|+|||+.+..
T Consensus 19 nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALK 36 (226)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 799999999999975543
No 341
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.57 E-value=0.23 Score=60.73 Aligned_cols=36 Identities=25% Similarity=0.527 Sum_probs=28.1
Q ss_pred CCCccEEEEchHHHHHHHhcCC---CCCccceEEechhhh
Q 001615 373 SAQTRLLFCTTGVLLRQLVEDP---DLSCVSHLLVDEIHE 409 (1044)
Q Consensus 373 ~~~~~I~v~T~g~Ll~~l~~~~---~L~~~~~lIiDEaHe 409 (1044)
.+.++|+||-.-.|++-..+.. +|.+ ++||+||||.
T Consensus 220 ~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAHN 258 (945)
T KOG1132|consen 220 KEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAHN 258 (945)
T ss_pred cccCcEEEechhhhcCHhhhccccccccc-cEEEEecccc
Confidence 3567899999999988765543 5655 8999999993
No 342
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.54 E-value=0.54 Score=60.06 Aligned_cols=120 Identities=25% Similarity=0.310 Sum_probs=59.9
Q ss_pred eEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCCccE
Q 001615 299 VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTRL 378 (1044)
Q Consensus 299 ~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~~~I 378 (1044)
+++++||||+|||..+- .+.+.++.. ...++.+- --+. +-...++...|...| .+||.
T Consensus 598 ~~lf~Gp~GvGKT~lA~-~La~~l~~~----~~~~~~~d-mse~--~~~~~~~~l~g~~~g-yvg~~------------- 655 (852)
T TIGR03345 598 VFLLVGPSGVGKTETAL-ALAELLYGG----EQNLITIN-MSEF--QEAHTVSRLKGSPPG-YVGYG------------- 655 (852)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHhCC----CcceEEEe-HHHh--hhhhhhccccCCCCC-ccccc-------------
Confidence 58999999999995443 233333321 11333321 1111 111222233332222 23332
Q ss_pred EEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccC----------CcccEEEcccCCChHHHHhh
Q 001615 379 LFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRR----------PDLRLILMSATINADLFSKY 448 (1044)
Q Consensus 379 ~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~----------~~~qiilmSATl~~~~~~~~ 448 (1044)
..|.|...+... .+++|+|||++. .+.++...++..+-.-+ -.-.+|+|+..+..+.+.+.
T Consensus 656 ---~~g~L~~~v~~~----p~svvllDEiek--a~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~ 726 (852)
T TIGR03345 656 ---EGGVLTEAVRRK----PYSVVLLDEVEK--AHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMAL 726 (852)
T ss_pred ---ccchHHHHHHhC----CCcEEEEechhh--cCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHh
Confidence 235666666653 478999999985 33443332222221110 02367788888777766554
Q ss_pred h
Q 001615 449 F 449 (1044)
Q Consensus 449 f 449 (1044)
+
T Consensus 727 ~ 727 (852)
T TIGR03345 727 C 727 (852)
T ss_pred c
Confidence 4
No 343
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.49 E-value=0.62 Score=52.37 Aligned_cols=51 Identities=12% Similarity=0.201 Sum_probs=34.1
Q ss_pred HHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcc
Q 001615 385 VLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (1044)
Q Consensus 385 ~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmS 437 (1044)
.+.+.+...+.-..++++|||+||. +...-.-.+||.+..-.++.-+|+.|
T Consensus 94 ~l~~~~~~~~~~g~~KV~iI~~a~~--m~~~AaNaLLKtLEEPp~~~~fiL~t 144 (325)
T PRK06871 94 EINEKVSQHAQQGGNKVVYIQGAER--LTEAAANALLKTLEEPRPNTYFLLQA 144 (325)
T ss_pred HHHHHHhhccccCCceEEEEechhh--hCHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 3555555566677899999999995 45555667777776654455445444
No 344
>PTZ00293 thymidine kinase; Provisional
Probab=92.47 E-value=0.4 Score=50.13 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=29.1
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEccc
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPR 339 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~ 339 (1044)
.|+..++.||-+|||||.++..+...... +.+++++-|.
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~~a-----g~kv~~~kp~ 41 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFTYS-----EKKCVVIKYS 41 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHHHc-----CCceEEEEec
Confidence 46778999999999999888876655432 3467777774
No 345
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=92.47 E-value=0.32 Score=39.69 Aligned_cols=48 Identities=15% Similarity=0.231 Sum_probs=41.3
Q ss_pred HHHHHHhccccccceeeecccCChhhHHHHHHHHHhcCceeeeecCCCc
Q 001615 121 WWGKLEQMKRGEEQEMIIKRKFSRADQQTLADMAHQLGLHFHAYNKGKA 169 (1044)
Q Consensus 121 w~~~l~~~~~~~~~e~~~~~~~s~~e~~~i~~~a~~~g~~~~~~~~~~~ 169 (1044)
....++.|..+....+.+++ ++..++..+|.+|...|+++.+.|+|..
T Consensus 4 i~~~i~~F~~~~~~~~~fpp-m~~~~R~~vH~lA~~~~L~S~S~G~g~~ 51 (58)
T cd02646 4 IKDEIEAFLLDSRDSLSFPP-MDKHGRKTIHKLANCYNLKSKSRGKGKK 51 (58)
T ss_pred HHHHHHHHHhCCCceEecCC-CCHHHHHHHHHHHHHcCCcccccccCCc
Confidence 45667788888888888876 9999999999999999999999887665
No 346
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=92.46 E-value=0.78 Score=54.06 Aligned_cols=149 Identities=15% Similarity=0.114 Sum_probs=88.0
Q ss_pred CCchHHHHHHHHHHHc----------CCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHH
Q 001615 281 LPAFKMKAEFLKAVAE----------NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARV 350 (1044)
Q Consensus 281 lpi~~~Q~~~i~~i~~----------~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv 350 (1044)
+++.|+|.-++-+|.. -+..+|.-|-+-||||.+.-++....+-.. ..+..+.+++|+.+-|.+....+
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-~~~~~~~i~A~s~~qa~~~F~~a 138 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-RSGAGIYILAPSVEQAANSFNPA 138 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-hcCCcEEEEeccHHHHHHhhHHH
Confidence 4567899999999872 235788899999999877744443332221 23558999999999999888776
Q ss_pred HHHhCCCC--CcEEEEEEeccccCCCCccEEEEchHHHHHHHhcCC---CCCccceEEechhhhccchhHHHHHHHHHHc
Q 001615 351 SSERGENL--GETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDP---DLSCVSHLLVDEIHERGMNEDFLLIILRDLL 425 (1044)
Q Consensus 351 ~~~~~~~~--g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~---~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~ 425 (1044)
+.-..... .....++.. ...|.+.-....++.+..++ .=.+..+.|+||.|+..-..+++ ..++.=+
T Consensus 139 r~mv~~~~~l~~~~~~q~~-------s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~~~~-~~~~~g~ 210 (546)
T COG4626 139 RDMVKRDDDLRDLCNVQTH-------SRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQEDMY-SEAKGGL 210 (546)
T ss_pred HHHHHhCcchhhhhccccc-------eeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHHHHH-HHHHhhh
Confidence 55432221 111111110 11122222223334444444 33567899999999743332333 3344445
Q ss_pred ccCCcccEEEccc
Q 001615 426 PRRPDLRLILMSA 438 (1044)
Q Consensus 426 ~~~~~~qiilmSA 438 (1044)
..+|+.+++..|-
T Consensus 211 ~ar~~~l~~~ITT 223 (546)
T COG4626 211 GARPEGLVVYITT 223 (546)
T ss_pred ccCcCceEEEEec
Confidence 5677777777665
No 347
>PRK09087 hypothetical protein; Validated
Probab=92.37 E-value=0.58 Score=49.97 Aligned_cols=57 Identities=18% Similarity=0.285 Sum_probs=30.8
Q ss_pred ceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccCCChHH-------HHhhhCCCCeecCCC
Q 001615 400 SHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINADL-------FSKYFGNAPTVHIPG 459 (1044)
Q Consensus 400 ~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSATl~~~~-------~~~~f~~~~~i~v~g 459 (1044)
++|+||++|....+.+-+..++..+... -+.++++++.++.. +.+-|....++.+..
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~---g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~ 152 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQA---GTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGE 152 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHhC---CCeEEEECCCChHHhccccccHHHHHhCCceeecCC
Confidence 4799999995433444455555554443 24566666643332 334444455555543
No 348
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=92.36 E-value=0.33 Score=61.48 Aligned_cols=107 Identities=21% Similarity=0.188 Sum_probs=70.1
Q ss_pred chHHHHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEE
Q 001615 283 AFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETV 362 (1044)
Q Consensus 283 i~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~v 362 (1044)
+.+-|.+++... ...++|.|..|||||+.+..-+...+... .-..-+||++.-|+.+|..+.+|+.+..+..
T Consensus 5 Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~-~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~~----- 76 (726)
T TIGR01073 5 LNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEK-NVAPWNILAITFTNKAAREMKERVEKLLGPV----- 76 (726)
T ss_pred cCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcC-CCCHHHeeeeeccHHHHHHHHHHHHHHhccc-----
Confidence 456788888653 45689999999999987766655544221 1123489999999999999999998764421
Q ss_pred EEEEeccccCCCCccEEEEchHHH-HHHHhcCCC-C-CccceEEechhhh
Q 001615 363 GYQIRLESKRSAQTRLLFCTTGVL-LRQLVEDPD-L-SCVSHLLVDEIHE 409 (1044)
Q Consensus 363 gy~ir~~~~~~~~~~I~v~T~g~L-l~~l~~~~~-L-~~~~~lIiDEaHe 409 (1044)
..++.++|--.| .+.|..... + -.-.+-|+|+.+.
T Consensus 77 ------------~~~~~i~TFHs~~~~iLr~~~~~~g~~~~f~i~d~~~~ 114 (726)
T TIGR01073 77 ------------AEDIWISTFHSMCVRILRRDIDRIGINRNFSIIDPTDQ 114 (726)
T ss_pred ------------cCCcEEEcHHHHHHHHHHHHHHHhCCCCCCCcCCHHHH
Confidence 135788886444 344433211 1 0123458898884
No 349
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=92.32 E-value=0.44 Score=53.69 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=19.7
Q ss_pred HHHHcCC--eEEEEecCCCchhchHHHH
Q 001615 292 KAVAENQ--VLVVSGETGCGKTTQLPQF 317 (1044)
Q Consensus 292 ~~i~~~~--~vii~a~TGSGKTt~~p~~ 317 (1044)
.++..++ .+|+.||+|+||||.+-+.
T Consensus 41 r~v~~~~l~SmIl~GPPG~GKTTlA~li 68 (436)
T COG2256 41 RAVEAGHLHSMILWGPPGTGKTTLARLI 68 (436)
T ss_pred HHHhcCCCceeEEECCCCCCHHHHHHHH
Confidence 4555554 6899999999999866543
No 350
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.30 E-value=0.43 Score=55.16 Aligned_cols=28 Identities=36% Similarity=0.563 Sum_probs=20.2
Q ss_pred HHHHHHcCC---eEEEEecCCCchhchHHHH
Q 001615 290 FLKAVAENQ---VLVVSGETGCGKTTQLPQF 317 (1044)
Q Consensus 290 ~i~~i~~~~---~vii~a~TGSGKTt~~p~~ 317 (1044)
+...+.+++ .++++||.|+|||+.+-.+
T Consensus 29 l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 29 LLNAIENNHLAQALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 444444543 6889999999999766554
No 351
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=92.26 E-value=0.61 Score=53.53 Aligned_cols=49 Identities=18% Similarity=0.299 Sum_probs=29.6
Q ss_pred HHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEE
Q 001615 385 VLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLIL 435 (1044)
Q Consensus 385 ~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiil 435 (1044)
.+.+.+...+...+..+|||||+|. +..+....+++.+....++..+|+
T Consensus 104 ~l~~~~~~~p~~~~~~vviidea~~--l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 104 EILDNVKYAPSSGKYKVYIIDEVHM--LSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred HHHHHHhcCcccCCceEEEEeChhh--cCHHHHHHHHHHHhCCccceeEEE
Confidence 3555555566778889999999995 333444455666543333344443
No 352
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=92.19 E-value=1 Score=48.94 Aligned_cols=118 Identities=20% Similarity=0.294 Sum_probs=65.1
Q ss_pred HHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccc
Q 001615 291 LKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLES 370 (1044)
Q Consensus 291 i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~ 370 (1044)
...+.++.++++.|++|+|||..+.-+..+.. .. +..|++ .++.+++.++..-... |
T Consensus 99 ~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~----g~sv~f-~~~~el~~~Lk~~~~~------~----------- 155 (254)
T COG1484 99 VEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KA----GISVLF-ITAPDLLSKLKAAFDE------G----------- 155 (254)
T ss_pred HHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-Hc----CCeEEE-EEHHHHHHHHHHHHhc------C-----------
Confidence 33444888999999999999955444333333 22 234444 3666666555432211 0
Q ss_pred cCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccc---hhHHHHHHHHHHcccCCcccEEEcccCCChHHHHh
Q 001615 371 KRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGM---NEDFLLIILRDLLPRRPDLRLILMSATINADLFSK 447 (1044)
Q Consensus 371 ~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~---~~d~ll~~lk~~~~~~~~~qiilmSATl~~~~~~~ 447 (1044)
...+.|.+.+ .++++|||||+=-... ..+.+.+++-.....+ .. +++.-.+.+.+..
T Consensus 156 ----------~~~~~l~~~l------~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~---~~-~~tsN~~~~~~~~ 215 (254)
T COG1484 156 ----------RLEEKLLREL------KKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESR---SL-IITSNLSFGEWDE 215 (254)
T ss_pred ----------chHHHHHHHh------hcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhc---cc-eeecCCChHHHHh
Confidence 0123455433 6899999999873211 2344444433332222 23 6666666666666
Q ss_pred hhCC
Q 001615 448 YFGN 451 (1044)
Q Consensus 448 ~f~~ 451 (1044)
.|+.
T Consensus 216 ~~~~ 219 (254)
T COG1484 216 LFGD 219 (254)
T ss_pred hccC
Confidence 6653
No 353
>PRK06620 hypothetical protein; Validated
Probab=92.18 E-value=0.25 Score=52.30 Aligned_cols=38 Identities=16% Similarity=0.348 Sum_probs=22.6
Q ss_pred ccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccCC
Q 001615 398 CVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATI 440 (1044)
Q Consensus 398 ~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSATl 440 (1044)
..++|+|||+|. +....+..++..+.... +.|++|||-
T Consensus 85 ~~d~lliDdi~~--~~~~~lf~l~N~~~e~g---~~ilits~~ 122 (214)
T PRK06620 85 KYNAFIIEDIEN--WQEPALLHIFNIINEKQ---KYLLLTSSD 122 (214)
T ss_pred cCCEEEEecccc--chHHHHHHHHHHHHhcC---CEEEEEcCC
Confidence 457899999993 34345555555554432 345566653
No 354
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.12 E-value=0.99 Score=50.85 Aligned_cols=18 Identities=39% Similarity=0.523 Sum_probs=15.1
Q ss_pred eEEEEecCCCchhchHHH
Q 001615 299 VLVVSGETGCGKTTQLPQ 316 (1044)
Q Consensus 299 ~vii~a~TGSGKTt~~p~ 316 (1044)
.+++.||+|+|||+.+-.
T Consensus 40 ~~ll~G~~G~GKt~~~~~ 57 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALA 57 (319)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 589999999999976544
No 355
>CHL00181 cbbX CbbX; Provisional
Probab=92.10 E-value=1.4 Score=48.95 Aligned_cols=21 Identities=29% Similarity=0.416 Sum_probs=17.1
Q ss_pred CCeEEEEecCCCchhchHHHH
Q 001615 297 NQVLVVSGETGCGKTTQLPQF 317 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~p~~ 317 (1044)
+-++++.||+|+|||+.+-..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 557899999999999766554
No 356
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.06 E-value=1.1 Score=53.53 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=29.6
Q ss_pred HHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEE
Q 001615 385 VLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLIL 435 (1044)
Q Consensus 385 ~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiil 435 (1044)
.+.+.+...|...++.++||||||. +..+-.-.+++.+....+...+|+
T Consensus 106 ~I~~~~~~~P~~~~~KVvIIDEad~--Lt~~a~naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 106 ALRDAVSYTPIKGKYKVYIIDEAHM--LTKEAFNALLKTLEEPPPRTIFIL 154 (486)
T ss_pred HHHHHHHhCcccCCeeEEEEEChhh--cCHHHHHHHHHHHhcCCCCeEEEE
Confidence 3455555566778899999999994 334444455665544333433333
No 357
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=91.99 E-value=1 Score=50.66 Aligned_cols=58 Identities=19% Similarity=0.194 Sum_probs=37.5
Q ss_pred EEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEccc
Q 001615 378 LLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSA 438 (1044)
Q Consensus 378 I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSA 438 (1044)
|-+-.---+.+.+...+....++++|||+||. ++..-.-.+||.+.. .|+..+|+.+.
T Consensus 104 I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~--m~~~aaNaLLK~LEE-Pp~~~fILi~~ 161 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPLEAPRKVVVIEDAET--MNEAAANALLKTLEE-PGNGTLILIAP 161 (314)
T ss_pred CcHHHHHHHHHHHccCcccCCceEEEEEchhh--cCHHHHHHHHHHHhC-CCCCeEEEEEC
Confidence 43434445677777777778999999999995 444455566666644 44554555444
No 358
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.92 E-value=0.23 Score=58.72 Aligned_cols=88 Identities=19% Similarity=0.286 Sum_probs=54.0
Q ss_pred HHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCC
Q 001615 294 VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRS 373 (1044)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~ 373 (1044)
+..+..++|.|++|+||||...+++.+... + +.+++++. ..+...|+..+. +.++.....
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~-~----g~~vlYvs-~Ees~~qi~~ra-~rlg~~~~~------------- 136 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAA-A----GGKVLYVS-GEESASQIKLRA-ERLGLPSDN------------- 136 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHh-c----CCeEEEEE-ccccHHHHHHHH-HHcCCChhc-------------
Confidence 345789999999999999999888876542 1 23666654 345566776664 334432211
Q ss_pred CCccEEEEc---hHHHHHHHhcCCCCCccceEEechhhh
Q 001615 374 AQTRLLFCT---TGVLLRQLVEDPDLSCVSHLLVDEIHE 409 (1044)
Q Consensus 374 ~~~~I~v~T---~g~Ll~~l~~~~~L~~~~~lIiDEaHe 409 (1044)
+.+.. -..+++.+.. .+.++||||+++.
T Consensus 137 ----l~~~~e~~l~~i~~~i~~----~~~~lVVIDSIq~ 167 (446)
T PRK11823 137 ----LYLLAETNLEAILATIEE----EKPDLVVIDSIQT 167 (446)
T ss_pred ----EEEeCCCCHHHHHHHHHh----hCCCEEEEechhh
Confidence 22221 2334444432 3578999999983
No 359
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=91.89 E-value=0.18 Score=53.64 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=20.0
Q ss_pred HHHHHHHHc--CCeEEEEecCCCchhchH
Q 001615 288 AEFLKAVAE--NQVLVVSGETGCGKTTQL 314 (1044)
Q Consensus 288 ~~~i~~i~~--~~~vii~a~TGSGKTt~~ 314 (1044)
+++...+.+ ++.++|.||-|+|||+.+
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 344555555 589999999999999643
No 360
>PRK13342 recombination factor protein RarA; Reviewed
Probab=91.79 E-value=0.75 Score=54.03 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=15.8
Q ss_pred eEEEEecCCCchhchHHHH
Q 001615 299 VLVVSGETGCGKTTQLPQF 317 (1044)
Q Consensus 299 ~vii~a~TGSGKTt~~p~~ 317 (1044)
.+++.||+|+||||.+-.+
T Consensus 38 ~ilL~GppGtGKTtLA~~i 56 (413)
T PRK13342 38 SMILWGPPGTGKTTLARII 56 (413)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 6899999999999766543
No 361
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=91.73 E-value=0.063 Score=58.44 Aligned_cols=36 Identities=33% Similarity=0.515 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHH
Q 001615 288 AEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEEL 323 (1044)
Q Consensus 288 ~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~ 323 (1044)
..++.-...|.-+|+.|||||||||-+.-+.|+...
T Consensus 264 Nk~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~ 299 (514)
T KOG2373|consen 264 NKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLFT 299 (514)
T ss_pred HHHhccCCCCceEEEecCCCCCceeEehHhhHHHHh
Confidence 334444455778999999999999998888888654
No 362
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.57 E-value=0.39 Score=51.60 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=23.7
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHHH
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEEE 322 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~~ 322 (1044)
.+..++|.|++|||||+...+++.+.+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~ 50 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL 50 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 478999999999999999988887765
No 363
>PRK04195 replication factor C large subunit; Provisional
Probab=91.11 E-value=1.3 Score=53.13 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=17.3
Q ss_pred CCeEEEEecCCCchhchHHHH
Q 001615 297 NQVLVVSGETGCGKTTQLPQF 317 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~p~~ 317 (1044)
.+.+++.||+|+||||.+-.+
T Consensus 39 ~~~lLL~GppG~GKTtla~al 59 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHAL 59 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 568999999999999766544
No 364
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=91.10 E-value=0.27 Score=52.79 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=50.4
Q ss_pred CcEEEEEcccHHHHHHHHHHHHHHhC--CCCCcEEEEEEeccccC----CCCccEEEEchHHHHHHHhcCC-CCCccceE
Q 001615 330 DCNIICTQPRRISAISVAARVSSERG--ENLGETVGYQIRLESKR----SAQTRLLFCTTGVLLRQLVEDP-DLSCVSHL 402 (1044)
Q Consensus 330 ~~~ilv~~P~r~la~qva~rv~~~~~--~~~g~~vgy~ir~~~~~----~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~l 402 (1044)
.|.+||+...-.=|..+.+.+..+.+ ..++....-++..+... ...++|.|+||++|..++..+. .++++.+|
T Consensus 126 sP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~~i 205 (252)
T PF14617_consen 126 SPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLKRI 205 (252)
T ss_pred CCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCeEE
Confidence 45677777654445555554544432 22222222222222221 2368899999999999998887 89999999
Q ss_pred Eechhh
Q 001615 403 LVDEIH 408 (1044)
Q Consensus 403 IiDEaH 408 (1044)
|||-=|
T Consensus 206 vlD~s~ 211 (252)
T PF14617_consen 206 VLDWSY 211 (252)
T ss_pred EEcCCc
Confidence 999866
No 365
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.01 E-value=0.68 Score=56.66 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=28.6
Q ss_pred HHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcc
Q 001615 387 LRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (1044)
Q Consensus 387 l~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmS 437 (1044)
...+...|...+..+|||||+|.. ...-.-.+++.+..-.+...+|+.+
T Consensus 116 ~e~~~~~P~~~~~KVvIIdEad~L--t~~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 116 RENVRYGPQKGRYRVYIIDEVHML--STAAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred HHHHHhhhhcCCCEEEEEeChhhc--CHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 344444567788999999999953 3333444555544433344444443
No 366
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=91.00 E-value=0.26 Score=59.81 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=48.3
Q ss_pred chHHHHHHHHHHHcC--CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHH-HHHHHH
Q 001615 283 AFKMKAEFLKAVAEN--QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVA-ARVSSE 353 (1044)
Q Consensus 283 i~~~Q~~~i~~i~~~--~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva-~rv~~~ 353 (1044)
.+|||.++++++... +.|+++.++-+|||..+.-.+.. .+.. ..+.+++++||..+|.... .++.-.
T Consensus 17 ~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~-~i~~---~P~~~l~v~Pt~~~a~~~~~~rl~Pm 86 (557)
T PF05876_consen 17 RTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGY-SIDQ---DPGPMLYVQPTDDAAKDFSKERLDPM 86 (557)
T ss_pred CChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceE-EEEe---CCCCEEEEEEcHHHHHHHHHHHHHHH
Confidence 457999999999765 57999999999999733333222 2221 3468999999999999876 445443
No 367
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=90.87 E-value=0.46 Score=50.92 Aligned_cols=29 Identities=10% Similarity=0.287 Sum_probs=24.4
Q ss_pred HHcCCeEEEEecCCCchhchHHHHHHHHH
Q 001615 294 VAENQVLVVSGETGCGKTTQLPQFILEEE 322 (1044)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~p~~il~~~ 322 (1044)
+..+..+++.|++||||||...+++...+
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~ 49 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFL 49 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999998888877643
No 368
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=90.86 E-value=0.97 Score=51.29 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=30.0
Q ss_pred HHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEE
Q 001615 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLIL 435 (1044)
Q Consensus 386 Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiil 435 (1044)
+...+...+...+.+++||||+|. +..+-.-.++|.+..-.++..+|+
T Consensus 98 l~~~~~~~~~~~~~kvviI~~a~~--~~~~a~NaLLK~LEEPp~~~~~Il 145 (329)
T PRK08058 98 LKEEFSKSGVESNKKVYIIEHADK--MTASAANSLLKFLEEPSGGTTAIL 145 (329)
T ss_pred HHHHHhhCCcccCceEEEeehHhh--hCHHHHHHHHHHhcCCCCCceEEE
Confidence 444444455667889999999995 344445556666655444444554
No 369
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=90.64 E-value=1.5 Score=49.29 Aligned_cols=52 Identities=19% Similarity=0.246 Sum_probs=33.9
Q ss_pred HHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEccc
Q 001615 385 VLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSA 438 (1044)
Q Consensus 385 ~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSA 438 (1044)
-+.+.+...+....++++|||+||. ++..-.-.+||.+..-.++.-+|+.|.
T Consensus 95 ~l~~~~~~~~~~~~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t~ 146 (319)
T PRK06090 95 QCNRLAQESSQLNGYRLFVIEPADA--MNESASNALLKTLEEPAPNCLFLLVTH 146 (319)
T ss_pred HHHHHHhhCcccCCceEEEecchhh--hCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 3445555556678899999999995 455556667777766444444444443
No 370
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=90.59 E-value=0.17 Score=41.80 Aligned_cols=19 Identities=37% Similarity=0.697 Sum_probs=16.0
Q ss_pred cCCeEEEEecCCCchhchH
Q 001615 296 ENQVLVVSGETGCGKTTQL 314 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~ 314 (1044)
.+.+++|+|++||||||.+
T Consensus 22 ~g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3568999999999999754
No 371
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=90.48 E-value=0.22 Score=56.91 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=21.0
Q ss_pred HHcCCeEEEEecCCCchhchHHHHHHHHH
Q 001615 294 VAENQVLVVSGETGCGKTTQLPQFILEEE 322 (1044)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~p~~il~~~ 322 (1044)
+-.|+.+.|+||+|+||||.+ ..+....
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~-~~i~~~I 192 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLL-QKIAQAI 192 (415)
T ss_pred eCCCCEEEEECCCCCChhHHH-HHHHHhh
Confidence 457999999999999999754 3344443
No 372
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=90.47 E-value=0.16 Score=54.39 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=16.7
Q ss_pred EEeecccccccCCCCeEEEEeCC
Q 001615 615 VLATNIAESSITIDDVVYVVDCG 637 (1044)
Q Consensus 615 lvaTniae~GidIp~V~~VId~g 637 (1044)
-+.|---..|.+.+.|.+|+...
T Consensus 184 ~~~T~~e~qG~tf~~V~l~~~~~ 206 (234)
T PF01443_consen 184 RVFTVHESQGLTFDNVTLVLLSD 206 (234)
T ss_pred ceechHHcceEEeCCEEEEECCC
Confidence 35566667888998888887644
No 373
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=90.45 E-value=2.3 Score=45.34 Aligned_cols=60 Identities=23% Similarity=0.350 Sum_probs=33.8
Q ss_pred HHHHHHcCC-eEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHh
Q 001615 290 FLKAVAENQ-VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSER 354 (1044)
Q Consensus 290 ~i~~i~~~~-~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~ 354 (1044)
+-..+..++ .+.++|+-|||||+..- .+++... .+..+.|++-.|+-..+ .+.+++...+
T Consensus 43 l~~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~~---~d~~~~v~i~~~~~s~~-~~~~ai~~~l 103 (269)
T COG3267 43 LHAAIADGQGILAVTGEVGSGKTVLRR-ALLASLN---EDQVAVVVIDKPTLSDA-TLLEAIVADL 103 (269)
T ss_pred HHHHHhcCCceEEEEecCCCchhHHHH-HHHHhcC---CCceEEEEecCcchhHH-HHHHHHHHHh
Confidence 444566777 99999999999996655 4443321 22233334444444433 3444444443
No 374
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=90.44 E-value=1.1 Score=50.77 Aligned_cols=56 Identities=13% Similarity=0.142 Sum_probs=34.4
Q ss_pred EEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEE
Q 001615 378 LLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLIL 435 (1044)
Q Consensus 378 I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiil 435 (1044)
|.|-.---+.+.+...+.....+++|+|++|. ++....-.++|.+....+...+|+
T Consensus 93 I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~--Ld~~a~naLLk~LEep~~~~~~Il 148 (325)
T PRK08699 93 IKIDAVREIIDNVYLTSVRGGLRVILIHPAES--MNLQAANSLLKVLEEPPPQVVFLL 148 (325)
T ss_pred cCHHHHHHHHHHHhhCcccCCceEEEEechhh--CCHHHHHHHHHHHHhCcCCCEEEE
Confidence 33333334556666667778899999999995 566666666665544333333444
No 375
>PRK10865 protein disaggregation chaperone; Provisional
Probab=90.33 E-value=1.7 Score=55.78 Aligned_cols=121 Identities=26% Similarity=0.371 Sum_probs=59.7
Q ss_pred eEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCCccE
Q 001615 299 VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTRL 378 (1044)
Q Consensus 299 ~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~~~I 378 (1044)
.++++||||+|||+.+ ..+.+.+... + . ..+++ ...+.... ..+....|...| .+||..
T Consensus 600 ~~Lf~Gp~G~GKT~lA-~aLa~~l~~~--~-~-~~i~i-d~se~~~~--~~~~~LiG~~pg-y~g~~~------------ 658 (857)
T PRK10865 600 SFLFLGPTGVGKTELC-KALANFMFDS--D-D-AMVRI-DMSEFMEK--HSVSRLVGAPPG-YVGYEE------------ 658 (857)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHhhcC--C-C-cEEEE-EhHHhhhh--hhHHHHhCCCCc-ccccch------------
Confidence 5899999999999765 3344444321 1 1 22322 22222211 123334443333 334321
Q ss_pred EEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHccc--------CCccc--EEEcccCCChHHHHhh
Q 001615 379 LFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPR--------RPDLR--LILMSATINADLFSKY 448 (1044)
Q Consensus 379 ~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~--------~~~~q--iilmSATl~~~~~~~~ 448 (1044)
-|.|...+.. ..+++|+|||++. +..+....++..+-.- .-+.+ +|+||..+..+.+.+.
T Consensus 659 ----~g~l~~~v~~----~p~~vLllDEiek--a~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~ 728 (857)
T PRK10865 659 ----GGYLTEAVRR----RPYSVILLDEVEK--AHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQER 728 (857)
T ss_pred ----hHHHHHHHHh----CCCCeEEEeehhh--CCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHh
Confidence 1234444433 3458999999995 4444444444433211 01233 5677777766655544
Q ss_pred hC
Q 001615 449 FG 450 (1044)
Q Consensus 449 f~ 450 (1044)
|+
T Consensus 729 ~~ 730 (857)
T PRK10865 729 FG 730 (857)
T ss_pred cc
Confidence 44
No 376
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=90.30 E-value=0.37 Score=53.41 Aligned_cols=68 Identities=19% Similarity=0.206 Sum_probs=40.2
Q ss_pred HHHHHHHHc----CCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 001615 288 AEFLKAVAE----NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (1044)
Q Consensus 288 ~~~i~~i~~----~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~ 357 (1044)
+++.+.+.. .+++.|.|..|+|||+.+..++-+.... ..-...+.+.........++.+.+...++..
T Consensus 6 ~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~--~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 6 EKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIK--NRFDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp HHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHC--CCCTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred HHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccc--ccccccccccccccccccccccccccccccc
Confidence 345555554 5689999999999998887766443322 1123344444444333355556666666554
No 377
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.26 E-value=0.33 Score=50.18 Aligned_cols=26 Identities=42% Similarity=0.588 Sum_probs=21.0
Q ss_pred HHHHHHcCCeEEEEecCCCchhchHH
Q 001615 290 FLKAVAENQVLVVSGETGCGKTTQLP 315 (1044)
Q Consensus 290 ~i~~i~~~~~vii~a~TGSGKTt~~p 315 (1044)
+...+..+..++|+|+|||||||.+-
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHH
Confidence 33356778999999999999998663
No 378
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=90.22 E-value=0.84 Score=50.23 Aligned_cols=34 Identities=26% Similarity=0.490 Sum_probs=27.6
Q ss_pred HHHHHHcCCeEEEEecCCCchhchHHHHHHHHHH
Q 001615 290 FLKAVAENQVLVVSGETGCGKTTQLPQFILEEEL 323 (1044)
Q Consensus 290 ~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~ 323 (1044)
++.-+..+..++|.|+||+|||+.+.+++...+.
T Consensus 23 ~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~ 56 (271)
T cd01122 23 LTKGLRKGELIILTAGTGVGKTTFLREYALDLIT 56 (271)
T ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3345667899999999999999988888877653
No 379
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=90.09 E-value=0.41 Score=51.07 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=23.7
Q ss_pred HHcCCeEEEEecCCCchhchHHHHHHHHH
Q 001615 294 VAENQVLVVSGETGCGKTTQLPQFILEEE 322 (1044)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~p~~il~~~ 322 (1044)
+..++.+.|.|++|||||+.+.+++....
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~ 44 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQ 44 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhh
Confidence 34588999999999999988887776654
No 380
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=89.96 E-value=1.6 Score=53.15 Aligned_cols=47 Identities=17% Similarity=0.342 Sum_probs=27.8
Q ss_pred HhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccC
Q 001615 390 LVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT 439 (1044)
Q Consensus 390 l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSAT 439 (1044)
+...|...++.++||||+|. +.....-.+++.+-. .|+.-++++.+|
T Consensus 111 ~~~~p~~~~~KVvIIDEa~~--Ls~~a~naLLK~LEe-pp~~~vfI~~tt 157 (563)
T PRK06647 111 IMFPPASSRYRVYIIDEVHM--LSNSAFNALLKTIEE-PPPYIVFIFATT 157 (563)
T ss_pred HHhchhcCCCEEEEEEChhh--cCHHHHHHHHHhhcc-CCCCEEEEEecC
Confidence 34456678899999999995 334444455555443 344334444334
No 381
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=89.86 E-value=0.53 Score=53.81 Aligned_cols=31 Identities=35% Similarity=0.650 Sum_probs=21.9
Q ss_pred HHHHH-cCCeEEEEecCCCchhchHHHHHHHHH
Q 001615 291 LKAVA-ENQVLVVSGETGCGKTTQLPQFILEEE 322 (1044)
Q Consensus 291 i~~i~-~~~~vii~a~TGSGKTt~~p~~il~~~ 322 (1044)
.+.+. .+..++|+|||||||||.+- .++...
T Consensus 127 ~~~~~~~~glilI~GpTGSGKTTtL~-aLl~~i 158 (358)
T TIGR02524 127 IDAIAPQEGIVFITGATGSGKSTLLA-AIIREL 158 (358)
T ss_pred HHHHhccCCEEEEECCCCCCHHHHHH-HHHHHH
Confidence 33443 67899999999999998663 344443
No 382
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=89.86 E-value=1.8 Score=48.88 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=29.2
Q ss_pred HHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccC
Q 001615 389 QLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT 439 (1044)
Q Consensus 389 ~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSAT 439 (1044)
.+...|...+.+++||||+|. ++..-.-.++|.+.. .|+--++++.++
T Consensus 84 ~~~~~p~~~~~kv~iI~~ad~--m~~~a~naLLK~LEe-pp~~t~~il~~~ 131 (313)
T PRK05564 84 EVNKKPYEGDKKVIIIYNSEK--MTEQAQNAFLKTIEE-PPKGVFIILLCE 131 (313)
T ss_pred HHhcCcccCCceEEEEechhh--cCHHHHHHHHHHhcC-CCCCeEEEEEeC
Confidence 333566778899999999995 334444456666654 444334444444
No 383
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=89.76 E-value=0.76 Score=47.04 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=18.4
Q ss_pred HHcCCeEEEEecCCCchhchHH
Q 001615 294 VAENQVLVVSGETGCGKTTQLP 315 (1044)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~p 315 (1044)
+..|+.+.|.|+.||||||.+-
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~ 46 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQ 46 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4579999999999999997443
No 384
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=89.65 E-value=1.1 Score=50.75 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=36.3
Q ss_pred EEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcc
Q 001615 378 LLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (1044)
Q Consensus 378 I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmS 437 (1044)
|-|-.---+.+.+...+....++++|||+||. ++..-.-.+||.+..-.++.-+|+.|
T Consensus 88 I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t 145 (334)
T PRK07993 88 LGVDAVREVTEKLYEHARLGGAKVVWLPDAAL--LTDAAANALLKTLEEPPENTWFFLAC 145 (334)
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEEcchHh--hCHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 33333334566666667778999999999995 45555566777776643333444433
No 385
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.64 E-value=1.7 Score=53.54 Aligned_cols=51 Identities=20% Similarity=0.412 Sum_probs=31.0
Q ss_pred HHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccC
Q 001615 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT 439 (1044)
Q Consensus 386 Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSAT 439 (1044)
++..+...|...++.++||||+|. +..+-.-.+++.+.. .|+--++++.+|
T Consensus 109 li~~~~~~P~~~~~KVvIIdea~~--Ls~~a~naLLK~LEe-pp~~tifIL~tt 159 (614)
T PRK14971 109 LIEQVRIPPQIGKYKIYIIDEVHM--LSQAAFNAFLKTLEE-PPSYAIFILATT 159 (614)
T ss_pred HHHHHhhCcccCCcEEEEEECccc--CCHHHHHHHHHHHhC-CCCCeEEEEEeC
Confidence 344445567788999999999995 333444455555444 444444455555
No 386
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=89.46 E-value=0.46 Score=53.42 Aligned_cols=47 Identities=34% Similarity=0.451 Sum_probs=30.7
Q ss_pred HHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHH
Q 001615 290 FLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRIS 342 (1044)
Q Consensus 290 ~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~l 342 (1044)
+.-.+..+.+++|+|+|||||||.+-. ++... ....+++++..++++
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~a-l~~~~-----~~~~~iv~ied~~El 183 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKS-LVDEI-----PKDERIITIEDTREI 183 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHH-HHccC-----CccccEEEEcCcccc
Confidence 334567889999999999999986633 33322 123357776665554
No 387
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=89.44 E-value=1 Score=49.81 Aligned_cols=55 Identities=22% Similarity=0.334 Sum_probs=31.1
Q ss_pred CccceEEechhhhcc-chhHHHHHHHHHHcccCCcccEEEcccCCChHHH---HhhhCCCCeecCC
Q 001615 397 SCVSHLLVDEIHERG-MNEDFLLIILRDLLPRRPDLRLILMSATINADLF---SKYFGNAPTVHIP 458 (1044)
Q Consensus 397 ~~~~~lIiDEaHeR~-~~~d~ll~~lk~~~~~~~~~qiilmSATl~~~~~---~~~f~~~~~i~v~ 458 (1044)
.+=++|.|||+|... ...|.++ ..-.+=-|++..||-....| ...+..|+++...
T Consensus 221 krkTilFiDEiHRFNksQQD~fL-------P~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLe 279 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDTFL-------PHVENGDITLIGATTENPSFQLNAALLSRCRVFVLE 279 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhccc-------ceeccCceEEEecccCCCccchhHHHHhccceeEec
Confidence 455789999999421 2334332 22234467788888643332 3445567766543
No 388
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=89.44 E-value=0.64 Score=53.46 Aligned_cols=88 Identities=18% Similarity=0.257 Sum_probs=52.6
Q ss_pred HHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCC
Q 001615 294 VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRS 373 (1044)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~ 373 (1044)
+..+..++|.|++|+||||.+.+++.+.... +.+++++.- .+...|+..|.. .++....
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~-----g~~VlYvs~-EEs~~qi~~Ra~-rlg~~~~-------------- 137 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKR-----GGKVLYVSG-EESPEQIKLRAD-RLGISTE-------------- 137 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc-----CCeEEEEEC-CcCHHHHHHHHH-HcCCCcc--------------
Confidence 4457899999999999999888887665421 236766543 234456655543 2332211
Q ss_pred CCccEEEE---chHHHHHHHhcCCCCCccceEEechhhh
Q 001615 374 AQTRLLFC---TTGVLLRQLVEDPDLSCVSHLLVDEIHE 409 (1044)
Q Consensus 374 ~~~~I~v~---T~g~Ll~~l~~~~~L~~~~~lIiDEaHe 409 (1044)
++.+. .-+.+++.+.. .+.++||||+++.
T Consensus 138 ---~l~l~~e~~le~I~~~i~~----~~~~lVVIDSIq~ 169 (372)
T cd01121 138 ---NLYLLAETNLEDILASIEE----LKPDLVIIDSIQT 169 (372)
T ss_pred ---cEEEEccCcHHHHHHHHHh----cCCcEEEEcchHH
Confidence 11111 12445555532 3578999999984
No 389
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=89.31 E-value=0.56 Score=53.91 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=22.3
Q ss_pred HHHHHHcCCeEEEEecCCCchhchHHHH
Q 001615 290 FLKAVAENQVLVVSGETGCGKTTQLPQF 317 (1044)
Q Consensus 290 ~i~~i~~~~~vii~a~TGSGKTt~~p~~ 317 (1044)
.++.+.++.+++..||+|+|||..+...
T Consensus 202 l~~fve~~~Nli~lGp~GTGKThla~~l 229 (449)
T TIGR02688 202 LLPLVEPNYNLIELGPKGTGKSYIYNNL 229 (449)
T ss_pred hHHHHhcCCcEEEECCCCCCHHHHHHHH
Confidence 3466788999999999999999655433
No 390
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=89.28 E-value=2.9 Score=47.96 Aligned_cols=130 Identities=15% Similarity=0.125 Sum_probs=57.3
Q ss_pred EEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHH---HHHHhCCCCCcEEEEEEecccc--CCCC
Q 001615 301 VVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAAR---VSSERGENLGETVGYQIRLESK--RSAQ 375 (1044)
Q Consensus 301 ii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~r---v~~~~~~~~g~~vgy~ir~~~~--~~~~ 375 (1044)
++.++.|+|||+.....++..++.... ...++++.....++..+... +...... .. .+.+.-..+.. ...+
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~--~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~nG 76 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP--GRRVIIASTYRQARDIFGRFWKGIIELLPS-WF-EIKFNEWNDRKIILPNG 76 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS----EEEEEESSHHHHHHHHHHHHHHHHTS-T-TT-S--EEEE-SSEEEETTS
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC--CcEEEEecCHHHHHHHHHHhHHHHHHHHHH-hc-CcccccCCCCcEEecCc
Confidence 578999999999988888888765421 24667765555555553332 2222222 11 12221111111 1345
Q ss_pred ccEEEEchHH--HHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccCC
Q 001615 376 TRLLFCTTGV--LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATI 440 (1044)
Q Consensus 376 ~~I~v~T~g~--Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSATl 440 (1044)
..|.+.+.+. -..-+.. ..+++||+||+-. +..+.....+............++.|-|.
T Consensus 77 ~~i~~~~~~~~~~~~~~~G----~~~~~i~iDE~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~p~ 137 (384)
T PF03237_consen 77 SRIQFRGADSPDSGDNIRG----FEYDLIIIDEAAK--VPDDAFSELIRRLRATWGGSIRMYISTPP 137 (384)
T ss_dssp -EEEEES-----SHHHHHT----S--SEEEEESGGG--STTHHHHHHHHHHHHCSTT--EEEEEE--
T ss_pred eEEEEeccccccccccccc----cccceeeeeeccc--CchHHHHHHHHhhhhcccCcceEEeecCC
Confidence 6676666432 1122322 5688999999774 22233333333333333323333455554
No 391
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.10 E-value=0.24 Score=53.61 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=18.7
Q ss_pred CCeEEEEecCCCchhchHHHHHHHHH
Q 001615 297 NQVLVVSGETGCGKTTQLPQFILEEE 322 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~p~~il~~~ 322 (1044)
.--++|.|||||||||.+.-+ ++.+
T Consensus 125 ~GLILVTGpTGSGKSTTlAam-Id~i 149 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAM-IDYI 149 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHH-HHHH
Confidence 346889999999999877644 4444
No 392
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=88.93 E-value=1.5 Score=43.25 Aligned_cols=91 Identities=19% Similarity=0.238 Sum_probs=50.6
Q ss_pred HHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCC
Q 001615 294 VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRS 373 (1044)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~ 373 (1044)
+..|+.+.|.|+.||||||.+-... .......+.|.+ .-+ ..++|...
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~-----G~~~~~~G~i~~--~~~-------------------~~i~~~~~------ 70 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIA-----GELEPDEGIVTW--GST-------------------VKIGYFEQ------ 70 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHc-----CCCCCCceEEEE--CCe-------------------EEEEEEcc------
Confidence 4578999999999999996443321 111112334433 110 13444321
Q ss_pred CCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHH
Q 001615 374 AQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDL 424 (1044)
Q Consensus 374 ~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~ 424 (1044)
...|...+.......+.+-.++|+||-- .++|.+....+.+.+
T Consensus 71 -------lS~G~~~rv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l 113 (144)
T cd03221 71 -------LSGGEKMRLALAKLLLENPNLLLLDEPT-NHLDLESIEALEEAL 113 (144)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHH
Confidence 4455544433322344566899999998 667776555544443
No 393
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=88.81 E-value=2.3 Score=47.16 Aligned_cols=131 Identities=17% Similarity=0.212 Sum_probs=72.5
Q ss_pred eEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEc--ccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCCc
Q 001615 299 VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQ--PRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQT 376 (1044)
Q Consensus 299 ~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~--P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~~ 376 (1044)
+++++|-.|+||||.+.-...... . . +.+|++.+ --|+.|+..-+..++..+..+ - ... .-...+
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~-~--~--g~~VllaA~DTFRAaAiEQL~~w~er~gv~v----I---~~~-~G~DpA 207 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLK-Q--Q--GKSVLLAAGDTFRAAAIEQLEVWGERLGVPV----I---SGK-EGADPA 207 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHH-H--C--CCeEEEEecchHHHHHHHHHHHHHHHhCCeE----E---ccC-CCCCcH
Confidence 788999999999998876654432 2 2 23455443 458888877666666555432 1 111 111112
Q ss_pred cEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcc-cCC------cccEEEcccCCChH--HHHh
Q 001615 377 RLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP-RRP------DLRLILMSATINAD--LFSK 447 (1044)
Q Consensus 377 ~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~-~~~------~~qiilmSATl~~~--~~~~ 447 (1044)
.| ..+-++.. .-.++++|++|=|- |.-+-.-|+.-|+++.+ ..| .-.++.+=||.-.+ ..++
T Consensus 208 aV-------afDAi~~A-kar~~DvvliDTAG-RLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk 278 (340)
T COG0552 208 AV-------AFDAIQAA-KARGIDVVLIDTAG-RLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAK 278 (340)
T ss_pred HH-------HHHHHHHH-HHcCCCEEEEeCcc-cccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHH
Confidence 23 23333221 23689999999999 65444444444444433 222 22455558887433 3456
Q ss_pred hhCC
Q 001615 448 YFGN 451 (1044)
Q Consensus 448 ~f~~ 451 (1044)
.|.+
T Consensus 279 ~F~e 282 (340)
T COG0552 279 IFNE 282 (340)
T ss_pred HHHH
Confidence 6653
No 394
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=88.72 E-value=0.49 Score=50.98 Aligned_cols=51 Identities=24% Similarity=0.298 Sum_probs=35.8
Q ss_pred HcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHH
Q 001615 295 AENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVS 351 (1044)
Q Consensus 295 ~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~ 351 (1044)
..+..++|.|++|||||+...+++.+.+.. + -+++++. +.+...++.++++
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~---g--e~~lyvs-~ee~~~~i~~~~~ 69 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQM---G--EPGIYVA-LEEHPVQVRRNMA 69 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHc---C--CcEEEEE-eeCCHHHHHHHHH
Confidence 357899999999999999999998887632 2 2344443 3445556666654
No 395
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=88.66 E-value=3.4 Score=49.92 Aligned_cols=106 Identities=22% Similarity=0.293 Sum_probs=59.4
Q ss_pred chHHHHHHHHHHH--------cCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHH-
Q 001615 283 AFKMKAEFLKAVA--------ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSE- 353 (1044)
Q Consensus 283 i~~~Q~~~i~~i~--------~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~- 353 (1044)
+..+++.|++.|. +|+.+.++||+|-|||.. |.+||+-+..+
T Consensus 416 m~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI-----------------------------~kSIA~ALnRkF 466 (906)
T KOG2004|consen 416 MEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSI-----------------------------AKSIARALNRKF 466 (906)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccH-----------------------------HHHHHHHhCCce
Confidence 4467888888764 478999999999999932 22222222111
Q ss_pred hCCCCCcEEE-EEEeccccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhh--ccchhHHHHHHHHHH
Q 001615 354 RGENLGETVG-YQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHE--RGMNEDFLLIILRDL 424 (1044)
Q Consensus 354 ~~~~~g~~vg-y~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHe--R~~~~d~ll~~lk~~ 424 (1044)
+...+|...- -.|+...+ --+=+-||++.+.|..=. ..=-++.|||+|. ++...|.--++|..+
T Consensus 467 fRfSvGG~tDvAeIkGHRR-----TYVGAMPGkiIq~LK~v~--t~NPliLiDEvDKlG~g~qGDPasALLElL 533 (906)
T KOG2004|consen 467 FRFSVGGMTDVAEIKGHRR-----TYVGAMPGKIIQCLKKVK--TENPLILIDEVDKLGSGHQGDPASALLELL 533 (906)
T ss_pred EEEeccccccHHhhcccce-----eeeccCChHHHHHHHhhC--CCCceEEeehhhhhCCCCCCChHHHHHHhc
Confidence 1112221110 00111111 133356999999886522 1113689999997 556667665555443
No 396
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=88.65 E-value=1.1 Score=45.52 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=32.3
Q ss_pred EEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHH
Q 001615 300 LVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSS 352 (1044)
Q Consensus 300 vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~ 352 (1044)
++|.|++|||||+.+.+++.+ . +.+++++.-.+..-..+.+|+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----~----~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----L----GGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----c----CCCeEEEEccCcCCHHHHHHHHH
Confidence 689999999999888877654 1 23667766666666666777655
No 397
>PF12846 AAA_10: AAA-like domain
Probab=88.60 E-value=0.52 Score=52.48 Aligned_cols=43 Identities=26% Similarity=0.391 Sum_probs=31.1
Q ss_pred CCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHH
Q 001615 297 NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAI 344 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~ 344 (1044)
|++++|+|+||||||+.+-..+ ...+.. +..++++=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~-~~~~~~----g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLL-EQLIRR----GPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHH-HHHHHc----CCCEEEEcCCchHHH
Confidence 5789999999999998777444 444432 357888888766554
No 398
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=88.48 E-value=0.55 Score=56.29 Aligned_cols=94 Identities=16% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCC
Q 001615 294 VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRS 373 (1044)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~ 373 (1044)
+-.+..++|.||+|+||||...|++.+.+.. +-+++++. .-+...|+..+... .|+.......
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~-----ge~~~y~s-~eEs~~~i~~~~~~---------lg~~~~~~~~-- 322 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENACAN-----KERAILFA-YEESRAQLLRNAYS---------WGIDFEEMEQ-- 322 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEE-eeCCHHHHHHHHHH---------cCCChHHHhh--
Q ss_pred CCccEEEEc-------hHHHHHHHhcCCCCCccceEEec
Q 001615 374 AQTRLLFCT-------TGVLLRQLVEDPDLSCVSHLLVD 405 (1044)
Q Consensus 374 ~~~~I~v~T-------~g~Ll~~l~~~~~L~~~~~lIiD 405 (1044)
...+.+.. ++.++..+...-.-.+.+.||||
T Consensus 323 -~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvID 360 (484)
T TIGR02655 323 -QGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAID 360 (484)
T ss_pred -CCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEc
No 399
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.47 E-value=0.74 Score=46.02 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=18.1
Q ss_pred HHcCCeEEEEecCCCchhchHH
Q 001615 294 VAENQVLVVSGETGCGKTTQLP 315 (1044)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~p 315 (1044)
+..|+.+.|.|++||||||.+-
T Consensus 22 i~~g~~~~i~G~nGsGKStll~ 43 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLR 43 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999997443
No 400
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=88.39 E-value=1.3 Score=54.96 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=47.5
Q ss_pred CchHHHHHHHHHH----HcC-CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCC
Q 001615 282 PAFKMKAEFLKAV----AEN-QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGE 356 (1044)
Q Consensus 282 pi~~~Q~~~i~~i----~~~-~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~ 356 (1044)
.+...|.+.+..+ .++ +..++.|-||||||+.+...+-+ . +..+||++|...+|.|+++.++.++..
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~~~~~-~-------~~p~Lvi~~n~~~A~ql~~el~~f~p~ 80 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMANVIAQ-V-------NRPTLVIAHNKTLAAQLYNEFKEFFPE 80 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHHHHHH-h-------CCCEEEEECCHHHHHHHHHHHHHhCCC
Confidence 3445565555554 333 25569999999999665543322 1 236899999999999999999888765
Q ss_pred C
Q 001615 357 N 357 (1044)
Q Consensus 357 ~ 357 (1044)
.
T Consensus 81 ~ 81 (655)
T TIGR00631 81 N 81 (655)
T ss_pred C
Confidence 3
No 401
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=88.34 E-value=2.1 Score=53.64 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=15.9
Q ss_pred eEEEEecCCCchhchHHHH
Q 001615 299 VLVVSGETGCGKTTQLPQF 317 (1044)
Q Consensus 299 ~vii~a~TGSGKTt~~p~~ 317 (1044)
.+++.||+|+||||.+-..
T Consensus 54 slLL~GPpGtGKTTLA~aI 72 (725)
T PRK13341 54 SLILYGPPGVGKTTLARII 72 (725)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 7899999999999766543
No 402
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=88.33 E-value=3.1 Score=47.80 Aligned_cols=28 Identities=21% Similarity=0.257 Sum_probs=20.8
Q ss_pred HHHHHHHcCCeEEEEecCCCchhchHHH
Q 001615 289 EFLKAVAENQVLVVSGETGCGKTTQLPQ 316 (1044)
Q Consensus 289 ~~i~~i~~~~~vii~a~TGSGKTt~~p~ 316 (1044)
++-...-.+..|+|.|+||+||++.+-+
T Consensus 93 qik~~ap~~~~vLi~GetGtGKel~A~~ 120 (403)
T COG1221 93 QIKAYAPSGLPVLIIGETGTGKELFARL 120 (403)
T ss_pred HHHhhCCCCCcEEEecCCCccHHHHHHH
Confidence 3333445788999999999999965443
No 403
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=88.30 E-value=0.83 Score=56.98 Aligned_cols=69 Identities=14% Similarity=0.233 Sum_probs=55.8
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeeccc
Q 001615 552 EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIA 621 (1044)
Q Consensus 552 ~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTnia 621 (1044)
..+.++++-+||..-+.++++.|.............+. +||.|+.++++++++.+.+|..+|+|+|+-.
T Consensus 123 ~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 123 KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 34578999999999999999998754322222344555 9999999999999999999999999999854
No 404
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=88.19 E-value=0.78 Score=60.72 Aligned_cols=63 Identities=21% Similarity=0.191 Sum_probs=50.5
Q ss_pred HHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCC
Q 001615 294 VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGE 356 (1044)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~ 356 (1044)
.-.+++++|.|..|||||..+..-++..++..+.-..-.|||+..|+.+|..+..|+.+.+..
T Consensus 13 ~~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L~~ 75 (1139)
T COG1074 13 SPPGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRLKE 75 (1139)
T ss_pred cCCCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHHHHH
Confidence 345779999999999999888888888777642112348999999999999999998876543
No 405
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=87.86 E-value=1.2 Score=50.04 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=14.9
Q ss_pred CeEEEEecCCCchhchHH
Q 001615 298 QVLVVSGETGCGKTTQLP 315 (1044)
Q Consensus 298 ~~vii~a~TGSGKTt~~p 315 (1044)
+.++++||+|+|||+.+-
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 469999999999996544
No 406
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.73 E-value=0.61 Score=52.35 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=34.2
Q ss_pred HHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHH
Q 001615 290 FLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRIS 342 (1044)
Q Consensus 290 ~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~l 342 (1044)
++.++..+++++++|+|||||||..-. ++... .+..+++.+.-+.++
T Consensus 136 L~~~ie~~~siii~G~t~sGKTt~lna-ll~~I-----p~~~rivtIEdt~E~ 182 (312)
T COG0630 136 LWLAIEARKSIIICGGTASGKTTLLNA-LLDFI-----PPEERIVTIEDTPEL 182 (312)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHH-HHHhC-----CchhcEEEEeccccc
Confidence 788889999999999999999975433 23322 224478887776665
No 407
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=87.69 E-value=0.82 Score=52.45 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=28.4
Q ss_pred HcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHH
Q 001615 295 AENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRIS 342 (1044)
Q Consensus 295 ~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~l 342 (1044)
..+..++|+|||||||||.+- .+++..... ....+|+.+.-..|.
T Consensus 147 ~~~GlilI~G~TGSGKTT~l~-al~~~i~~~--~~~~~IvtiEdp~E~ 191 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLAA-SIYQHCGET--YPDRKIVTYEDPIEY 191 (372)
T ss_pred hcCCEEEEECCCCCCHHHHHH-HHHHHHHhc--CCCceEEEEecCchh
Confidence 345678999999999998663 344544321 123467776655444
No 408
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=87.61 E-value=3.3 Score=52.50 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=15.7
Q ss_pred CCeEEEEecCCCchhchHH
Q 001615 297 NQVLVVSGETGCGKTTQLP 315 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~p 315 (1044)
..++++.||+|+|||+.+-
T Consensus 203 ~~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4589999999999996543
No 409
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=87.59 E-value=3.2 Score=47.63 Aligned_cols=134 Identities=19% Similarity=0.260 Sum_probs=82.9
Q ss_pred CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCCcc
Q 001615 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTR 377 (1044)
Q Consensus 298 ~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~~~ 377 (1044)
.+++.+|=-||||||.+.-.... +.. ++..+-+++.=..|.+|...-+.+++..+..+ |.. ... ..-
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~--lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~-----f~~--~~~---~~P 167 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKY--LKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPF-----FGS--GTE---KDP 167 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHH--HHH-cCCceEEEecccCChHHHHHHHHHHHHcCCce-----ecC--CCC---CCH
Confidence 36888999999999887765443 222 45555666666889999888778877665443 111 000 111
Q ss_pred EEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccCC--ChHHHHhhhC
Q 001615 378 LLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATI--NADLFSKYFG 450 (1044)
Q Consensus 378 I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSATl--~~~~~~~~f~ 450 (1044)
+-++..+ +... ....+++||||=|-...++.+++..+...-...+|+=-++++=|++ ++...++-|+
T Consensus 168 v~Iak~a--l~~a----k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~ 236 (451)
T COG0541 168 VEIAKAA--LEKA----KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFN 236 (451)
T ss_pred HHHHHHH--HHHH----HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHh
Confidence 1122222 1112 2356899999999855577777766655545567777788888887 4444555554
No 410
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=87.54 E-value=0.59 Score=48.86 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=24.3
Q ss_pred eEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHH
Q 001615 299 VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRI 341 (1044)
Q Consensus 299 ~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~ 341 (1044)
.++|+|||||||||.+-. ++...... ...+|+++.-..+
T Consensus 3 lilI~GptGSGKTTll~~-ll~~~~~~---~~~~i~t~e~~~E 41 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAA-MIDYINKN---KTHHILTIEDPIE 41 (198)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHhhhc---CCcEEEEEcCCcc
Confidence 579999999999987643 34333221 2346666654433
No 411
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.45 E-value=0.86 Score=46.31 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=18.4
Q ss_pred HHcCCeEEEEecCCCchhchHH
Q 001615 294 VAENQVLVVSGETGCGKTTQLP 315 (1044)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~p 315 (1044)
+..|..+.|.|+.||||||.+-
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~ 46 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLK 46 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4579999999999999997443
No 412
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=87.45 E-value=0.41 Score=51.83 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=20.7
Q ss_pred HHcCCeEEEEecCCCchhchHHHHHHHH
Q 001615 294 VAENQVLVVSGETGCGKTTQLPQFILEE 321 (1044)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~p~~il~~ 321 (1044)
+..|+.++|.|+.|+||||.+ ..++..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLl-r~I~n~ 39 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLL-QSIANA 39 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHH-HHHHhc
Confidence 457999999999999999743 444443
No 413
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=87.24 E-value=0.89 Score=48.96 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=17.8
Q ss_pred hHHHHHHHhcCCCCCccceEEechhhh
Q 001615 383 TGVLLRQLVEDPDLSCVSHLLVDEIHE 409 (1044)
Q Consensus 383 ~g~Ll~~l~~~~~L~~~~~lIiDEaHe 409 (1044)
||=|...|. .|+.-+++.|||+|.
T Consensus 91 ~gDlaaiLt---~Le~~DVLFIDEIHr 114 (332)
T COG2255 91 PGDLAAILT---NLEEGDVLFIDEIHR 114 (332)
T ss_pred hhhHHHHHh---cCCcCCeEEEehhhh
Confidence 555666663 467789999999994
No 414
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.17 E-value=1.9 Score=50.20 Aligned_cols=106 Identities=23% Similarity=0.409 Sum_probs=63.1
Q ss_pred eEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCCccE
Q 001615 299 VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTRL 378 (1044)
Q Consensus 299 ~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~~~I 378 (1044)
.+++.||.|||||+.+.+..+... -|-|=++.|....-.+=..+++.
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~-------FPFvKiiSpe~miG~sEsaKc~~-------------------------- 586 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSD-------FPFVKIISPEDMIGLSESAKCAH-------------------------- 586 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcC-------CCeEEEeChHHccCccHHHHHHH--------------------------
Confidence 589999999999987777766542 34555555643322211111111
Q ss_pred EEEchHHHHHHHhcCCCCCccceEEechhhhccch--------hHHHHHHHHHHcccCC--cccEEEcccCCChHHHH
Q 001615 379 LFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMN--------EDFLLIILRDLLPRRP--DLRLILMSATINADLFS 446 (1044)
Q Consensus 379 ~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~--------~d~ll~~lk~~~~~~~--~~qiilmSATl~~~~~~ 446 (1044)
++....|..=+.+++||||++. |-++ +...++.|..++++.| ..|+++|.-|-..+.++
T Consensus 587 --------i~k~F~DAYkS~lsiivvDdiE-rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~ 655 (744)
T KOG0741|consen 587 --------IKKIFEDAYKSPLSIIVVDDIE-RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ 655 (744)
T ss_pred --------HHHHHHHhhcCcceEEEEcchh-hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH
Confidence 1111122233567899999997 5333 4567777777777554 45888888776555443
No 415
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=87.15 E-value=0.73 Score=50.49 Aligned_cols=50 Identities=30% Similarity=0.418 Sum_probs=29.8
Q ss_pred HHHHHH-HHH-cCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHH
Q 001615 287 KAEFLK-AVA-ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRI 341 (1044)
Q Consensus 287 Q~~~i~-~i~-~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~ 341 (1044)
|.+.+. ++. .+..++|+|+|||||||.+-. +++.... ...+|+.+.-..|
T Consensus 68 ~~~~l~~~~~~~~GlilisG~tGSGKTT~l~a-ll~~i~~----~~~~iitiEdp~E 119 (264)
T cd01129 68 NLEIFRKLLEKPHGIILVTGPTGSGKTTTLYS-ALSELNT----PEKNIITVEDPVE 119 (264)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcHHHHHHH-HHhhhCC----CCCeEEEECCCce
Confidence 444444 443 345799999999999987643 3333311 2346777655444
No 416
>PF05894 Podovirus_Gp16: Podovirus DNA encapsidation protein (Gp16); InterPro: IPR008784 This family consists of several DNA encapsidation protein (Gp16) sequences from the phi-29-like viruses. Gene product 16 catalyses the in vivo and in vitro genome-encapsidation reaction [].; GO: 0005524 ATP binding, 0019069 viral capsid assembly
Probab=87.06 E-value=5.3 Score=43.85 Aligned_cols=133 Identities=19% Similarity=0.193 Sum_probs=77.2
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHH----HHHHHHHHHHHhCCCCCcEEEEEEecccc
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRIS----AISVAARVSSERGENLGETVGYQIRLESK 371 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~l----a~qva~rv~~~~~~~~g~~vgy~ir~~~~ 371 (1044)
++.--+|+|.-|-|||.++--.++++.+..+ .+.|++--...- +..-...++++....--...|-.+-.
T Consensus 16 ~~~~~~viG~RgiGKtya~k~~~i~df~~~G----~qfiyLRr~k~E~~~~~n~~f~dv~~~f~~~~F~vk~~k~~i--- 88 (333)
T PF05894_consen 16 DRILNFVIGARGIGKTYALKKKLIKDFIEYG----EQFIYLRRYKTELDKMKNKFFNDVQQEFPNNEFEVKGNKIYI--- 88 (333)
T ss_pred cceEEEEEecccccchhHHHHHHHHHHHhcC----CEEEEEEecchHHHHHhhHHHHHHHHhCCCCcEEEEccEEEE---
Confidence 4444566799999999999999999988753 356665332222 22223344444322111111211111
Q ss_pred CCCCccEEEEchHHHHHHHhcCCCCCccceEEechhh-hccc------hhHHHHHHHHHHcccCCcccEEEccc
Q 001615 372 RSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIH-ERGM------NEDFLLIILRDLLPRRPDLRLILMSA 438 (1044)
Q Consensus 372 ~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaH-eR~~------~~d~ll~~lk~~~~~~~~~qiilmSA 438 (1044)
.+-.|.+.+|=.-...+ .+....++.+||+||+- |++- ..+-|+.++..+-+.+.+.+++++|-
T Consensus 89 --dgk~~g~~~~Ls~~q~~-Ks~~Yp~V~~IvfDEfi~ek~~~~y~~nEv~~Lln~i~TV~R~rd~i~vicl~N 159 (333)
T PF05894_consen 89 --DGKLIGYFIPLSGWQKL-KSSSYPNVYTIVFDEFIIEKSNWRYIPNEVKALLNFIDTVFRFRDRIRVICLSN 159 (333)
T ss_pred --CCeEEEEEEecchhhhc-ccCCCCcEEEEEEEEEEecCcccCCCchHHHHHHHHHHHHhhcccceEEEEEec
Confidence 12234444442222222 23478899999999998 4331 13456667777777889999999985
No 417
>PHA00149 DNA encapsidation protein
Probab=87.03 E-value=5.5 Score=43.03 Aligned_cols=140 Identities=19% Similarity=0.225 Sum_probs=81.1
Q ss_pred EEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccH-HHHHHHHHHHHHHhCCCCCcE---EEEEEeccccCCCC
Q 001615 300 LVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRR-ISAISVAARVSSERGENLGET---VGYQIRLESKRSAQ 375 (1044)
Q Consensus 300 vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r-~la~qva~rv~~~~~~~~g~~---vgy~ir~~~~~~~~ 375 (1044)
-+|+|.-|-|||.++--.++...+..+ -+.|++--.. |+.. ...-++.+..+.+... -|-.+-. .+
T Consensus 20 ~fviG~RgiGKTya~k~~~~k~~i~kg----eqfiYLRr~k~El~~-k~~Ff~d~~~~~~~~~F~Vkg~ki~~-----~~ 89 (331)
T PHA00149 20 NFVIGARGIGKTYALKKYLIKRFIKKG----EQFIYLRRYKSELKK-KSKFFADIAQEFPNTEFEVKGRKIYI-----KG 89 (331)
T ss_pred EEEEeccccchhhHHHHHHHHHHHhcC----cEEEEEEecchhhhh-hhhhhHHHHHhCCCCceEEEccEEEE-----cC
Confidence 356699999999999999898888753 2555543222 2222 2333444433222111 1211111 13
Q ss_pred ccEEEEchHHHHHHHhcCCCCCccceEEechhhh-c------cchhHHHHHHHHHHcccCCcccEEEcccCC-ChHHHHh
Q 001615 376 TRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHE-R------GMNEDFLLIILRDLLPRRPDLRLILMSATI-NADLFSK 447 (1044)
Q Consensus 376 ~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHe-R------~~~~d~ll~~lk~~~~~~~~~qiilmSATl-~~~~~~~ 447 (1044)
-.|-+.-|=.-...+. +....++.+|++||+-- + .-+.+.++.++..+.+.+.+.+++++|-.. -.+-+-.
T Consensus 90 k~igy~i~LS~~q~~K-s~~Yp~V~~I~fDEfi~dk~n~~YlpNE~~allnli~tV~R~Re~vr~~~lsNa~~~~NPyF~ 168 (331)
T PHA00149 90 KLIGYAIPLSTWQALK-SSAYPNVSTIFFDEFIREKDNKRYLPNEVDALLNLIDTVFRARERVRCICLSNAVSIVNPYFL 168 (331)
T ss_pred eEEEEEEehhhHHhhc-ccCCCceEEEEeeeeeecCcccccCCchHHHHHHHHHHHHHhhcCeEEEEEcCcccccchhhh
Confidence 3455555533333332 34678999999999982 2 123456777777888888899999998653 2223444
Q ss_pred hhC
Q 001615 448 YFG 450 (1044)
Q Consensus 448 ~f~ 450 (1044)
||+
T Consensus 169 yfg 171 (331)
T PHA00149 169 YFG 171 (331)
T ss_pred eec
Confidence 554
No 418
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=86.94 E-value=1.6 Score=52.19 Aligned_cols=17 Identities=35% Similarity=0.671 Sum_probs=14.5
Q ss_pred CCeEEEEecCCCchhch
Q 001615 297 NQVLVVSGETGCGKTTQ 313 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~ 313 (1044)
.+.+++.||+|||||+.
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 45699999999999963
No 419
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=86.91 E-value=1.7 Score=48.72 Aligned_cols=149 Identities=17% Similarity=0.184 Sum_probs=74.8
Q ss_pred CCCchHHHHHHHHHHHcCCe------EEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEE--EcccHHHHHHHHHHHH
Q 001615 280 KLPAFKMKAEFLKAVAENQV------LVVSGETGCGKTTQLPQFILEEELSSLRGADCNIIC--TQPRRISAISVAARVS 351 (1044)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~~~------vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv--~~P~r~la~qva~rv~ 351 (1044)
..|-...|-..+..+..+++ ++|-|.+|+|||..+-+++-.. +-...-+=| ..-.+.+-.++...+.
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-----n~~~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-----NLENVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-----CCcceeeehHHhccHHHHHHHHHHHhc
Confidence 34556677778878776653 4899999999996555544332 101111100 1134555555554432
Q ss_pred HHhCCCCCcEEEEEEeccccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhhh-ccchhHHHHHHHHHHcccCCc
Q 001615 352 SERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHE-RGMNEDFLLIILRDLLPRRPD 430 (1044)
Q Consensus 352 ~~~~~~~g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHe-R~~~~d~ll~~lk~~~~~~~~ 430 (1044)
+... -|..++ .....+++-=.++.....-...+..-+||+|-|+. |+.++-.+..+++.-.-...+
T Consensus 82 --~~d~----dg~~~~-------~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~ 148 (438)
T KOG2543|consen 82 --LADK----DGDKVE-------GDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEP 148 (438)
T ss_pred --cCCC----chhhhh-------hHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCC
Confidence 0111 111111 11112222212222211111335567899999995 566666666555532222223
Q ss_pred ccEEEcccCCChHHHH
Q 001615 431 LRLILMSATINADLFS 446 (1044)
Q Consensus 431 ~qiilmSATl~~~~~~ 446 (1044)
.-.|++|+++....+-
T Consensus 149 ~i~iils~~~~e~~y~ 164 (438)
T KOG2543|consen 149 TIVIILSAPSCEKQYL 164 (438)
T ss_pred ceEEEEeccccHHHhh
Confidence 4567789997766544
No 420
>PRK04841 transcriptional regulator MalT; Provisional
Probab=86.84 E-value=1.6 Score=57.06 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=22.2
Q ss_pred HHHcCCeEEEEecCCCchhchHHHHH
Q 001615 293 AVAENQVLVVSGETGCGKTTQLPQFI 318 (1044)
Q Consensus 293 ~i~~~~~vii~a~TGSGKTt~~p~~i 318 (1044)
.....+.++|+||.|.||||.+.+++
T Consensus 28 ~~~~~~~~~v~apaG~GKTtl~~~~~ 53 (903)
T PRK04841 28 GANNYRLVLVTSPAGYGKTTLISQWA 53 (903)
T ss_pred cccCCCeEEEECCCCCCHHHHHHHHH
Confidence 33456899999999999999998877
No 421
>PRK05580 primosome assembly protein PriA; Validated
Probab=86.59 E-value=1 Score=56.33 Aligned_cols=74 Identities=12% Similarity=0.196 Sum_probs=60.7
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEE
Q 001615 554 DGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYV 633 (1044)
Q Consensus 554 ~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~V 633 (1044)
++.+||.+|+++-+.++.+.+++. .+..+..+||+++..+|.+++.....|..+|||+|.-+-. +.+.++.+|
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~------fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~li 262 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRAR------FGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLI 262 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHH------hCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEE
Confidence 568999999999999999999763 2346888999999999999988888999999999975432 556677766
Q ss_pred E
Q 001615 634 V 634 (1044)
Q Consensus 634 I 634 (1044)
|
T Consensus 263 V 263 (679)
T PRK05580 263 I 263 (679)
T ss_pred E
Confidence 6
No 422
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=86.56 E-value=5 Score=44.30 Aligned_cols=53 Identities=23% Similarity=0.181 Sum_probs=36.6
Q ss_pred HHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEEcccC
Q 001615 385 VLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT 439 (1044)
Q Consensus 385 ~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiilmSAT 439 (1044)
-+.+.+...+.-..++++|||+||. +..+-.-.+||.+..-.++..+|+.|..
T Consensus 82 ~l~~~~~~~p~e~~~kv~ii~~ad~--mt~~AaNaLLK~LEEPp~~~~fiL~~~~ 134 (290)
T PRK05917 82 AIKKQIWIHPYESPYKIYIIHEADR--MTLDAISAFLKVLEDPPQHGVIILTSAK 134 (290)
T ss_pred HHHHHHhhCccCCCceEEEEechhh--cCHHHHHHHHHHhhcCCCCeEEEEEeCC
Confidence 3555555566678899999999995 5556666777777665555556665554
No 423
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=86.43 E-value=0.77 Score=50.33 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=26.5
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCchhchHHHH
Q 001615 286 MKAEFLKAVAENQVLVVSGETGCGKTTQLPQF 317 (1044)
Q Consensus 286 ~Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~ 317 (1044)
..+.++..+..++.+++.||+|+|||+.+-.+
T Consensus 10 l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~l 41 (262)
T TIGR02640 10 VTSRALRYLKSGYPVHLRGPAGTGKTTLAMHV 41 (262)
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHH
Confidence 55667888889999999999999999766443
No 424
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=86.42 E-value=7.7 Score=43.04 Aligned_cols=129 Identities=15% Similarity=0.211 Sum_probs=69.2
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcc----cHHHHHHHHHHHHHHhCCCCCcEEEEEEecccc
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQP----RRISAISVAARVSSERGENLGETVGYQIRLESK 371 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P----~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~ 371 (1044)
+++.++++||-|||||+.+--.+.+ .. ..+...-++=+-+ -+.+...++..++.++... +...|.-
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~-~q--~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~-~k~~gsf------ 117 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSD-IQ--ENGENFLLVRLNGELQTDKIALKGITRQLALELNRI-VKSFGSF------ 117 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhh-HH--hcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh-heeeccc------
Confidence 4667999999999999766555554 21 2232222322222 4445556666666554422 1112210
Q ss_pred CCCCccEEEEchHHHHHHHhcCCCCCcc-ceEEechhhhcc--chhHHHHHHHHHHcccCCcccEEEcccCCCh
Q 001615 372 RSAQTRLLFCTTGVLLRQLVEDPDLSCV-SHLLVDEIHERG--MNEDFLLIILRDLLPRRPDLRLILMSATINA 442 (1044)
Q Consensus 372 ~~~~~~I~v~T~g~Ll~~l~~~~~L~~~-~~lIiDEaHeR~--~~~d~ll~~lk~~~~~~~~~qiilmSATl~~ 442 (1044)
+. |-..|+..|..+..-... =++|+||+|-.. ...-.+-.+.......+.++-+|++|--+|.
T Consensus 118 ----te----~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 118 ----TE----NLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred ----ch----hHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 00 124566666665544444 456788988311 2222334444444445567788888887764
No 425
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=86.09 E-value=2.1 Score=43.76 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=20.0
Q ss_pred HHHcCCeEEEEecCCCchhchHHH
Q 001615 293 AVAENQVLVVSGETGCGKTTQLPQ 316 (1044)
Q Consensus 293 ~i~~~~~vii~a~TGSGKTt~~p~ 316 (1044)
.+..|..+.|.|+.||||||.+-.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~ 44 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKI 44 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHH
Confidence 456899999999999999975543
No 426
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=86.07 E-value=2.6 Score=50.01 Aligned_cols=32 Identities=31% Similarity=0.325 Sum_probs=21.8
Q ss_pred HHHHHHHcCC---eEEEEecCCCchhchHHHHHHH
Q 001615 289 EFLKAVAENQ---VLVVSGETGCGKTTQLPQFILE 320 (1044)
Q Consensus 289 ~~i~~i~~~~---~vii~a~TGSGKTt~~p~~il~ 320 (1044)
.+...+..++ .+++.||.|+|||+.+-.+.-.
T Consensus 28 ~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~ 62 (451)
T PRK06305 28 VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKA 62 (451)
T ss_pred HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3444555554 4789999999999876655433
No 427
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=86.03 E-value=1.7 Score=54.50 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=64.8
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeec-ccccccCCCCeE
Q 001615 553 GDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATN-IAESSITIDDVV 631 (1044)
Q Consensus 553 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTn-iae~GidIp~V~ 631 (1044)
.+..+||.+||+.-+.+.++.++... . ..++.+..+||+++..++..++....+|...|||+|. .+...+.+.++.
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~--~-~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~ 385 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLL--E-PLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLG 385 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHH--h-hcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccc
Confidence 35689999999999999888887531 1 1357899999999999999999999999999999996 344566778888
Q ss_pred EEEe
Q 001615 632 YVVD 635 (1044)
Q Consensus 632 ~VId 635 (1044)
+||-
T Consensus 386 lvVI 389 (681)
T PRK10917 386 LVII 389 (681)
T ss_pred eEEE
Confidence 7773
No 428
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.91 E-value=2.4 Score=52.05 Aligned_cols=23 Identities=30% Similarity=0.801 Sum_probs=18.3
Q ss_pred cCCeEEEEecCCCchhchHHHHH
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFI 318 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~i 318 (1044)
.++.+++.||+||||||.+-...
T Consensus 109 ~~~illL~GP~GsGKTTl~~~la 131 (637)
T TIGR00602 109 PKRILLITGPSGCGKSTTIKILS 131 (637)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999998765543
No 429
>PRK13764 ATPase; Provisional
Probab=85.84 E-value=1.1 Score=54.26 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=28.0
Q ss_pred HcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHH
Q 001615 295 AENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRIS 342 (1044)
Q Consensus 295 ~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~l 342 (1044)
..++.++|+|+|||||||.+ ..+++.+... ...|+.+.-.+++
T Consensus 255 ~~~~~ILIsG~TGSGKTTll-~AL~~~i~~~----~riV~TiEDp~El 297 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFA-QALAEFYADM----GKIVKTMESPRDL 297 (602)
T ss_pred hcCCEEEEECCCCCCHHHHH-HHHHHHHhhC----CCEEEEECCCccc
Confidence 44778999999999999865 4455554321 2244455555555
No 430
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=85.70 E-value=0.8 Score=46.65 Aligned_cols=43 Identities=12% Similarity=0.023 Sum_probs=25.9
Q ss_pred EchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHH
Q 001615 381 CTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDL 424 (1044)
Q Consensus 381 ~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~ 424 (1044)
...|...+.......+.+-+++|+||-= .++|......+.+.+
T Consensus 97 LS~G~~qrv~la~al~~~p~~lllDEPt-~~LD~~~~~~l~~~l 139 (173)
T cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPN-SHLDVEGERALNQAI 139 (173)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCc-cccCHHHHHHHHHHH
Confidence 4455544443333345677899999988 667766554444433
No 431
>PLN02165 adenylate isopentenyltransferase
Probab=85.70 E-value=0.17 Score=56.45 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=17.6
Q ss_pred HcCCeEEEEecCCCchhchHHH
Q 001615 295 AENQVLVVSGETGCGKTTQLPQ 316 (1044)
Q Consensus 295 ~~~~~vii~a~TGSGKTt~~p~ 316 (1044)
..+++++|.||||||||+.+..
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~ 62 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVD 62 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHH
Confidence 3467899999999999965543
No 432
>PRK05973 replicative DNA helicase; Provisional
Probab=85.67 E-value=0.79 Score=49.08 Aligned_cols=60 Identities=17% Similarity=0.226 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHH
Q 001615 287 KAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSS 352 (1044)
Q Consensus 287 Q~~~i~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~ 352 (1044)
.+++..-+..|..++|.|++|+|||+...+++.+.+.. | .+++++ -.-+-..++.+++..
T Consensus 54 ~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---G--e~vlyf-SlEes~~~i~~R~~s 113 (237)
T PRK05973 54 AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS---G--RTGVFF-TLEYTEQDVRDRLRA 113 (237)
T ss_pred HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---C--CeEEEE-EEeCCHHHHHHHHHH
Confidence 45566677889999999999999999999998877532 2 234443 222334556666543
No 433
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=85.66 E-value=1.4 Score=45.06 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=20.0
Q ss_pred HHcCCeEEEEecCCCchhchHHHH
Q 001615 294 VAENQVLVVSGETGCGKTTQLPQF 317 (1044)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~p~~ 317 (1044)
+..|..+.|.||.||||||.+-..
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 457889999999999999877543
No 434
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.57 E-value=1.9 Score=51.88 Aligned_cols=74 Identities=12% Similarity=0.201 Sum_probs=60.1
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEEE
Q 001615 554 DGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYV 633 (1044)
Q Consensus 554 ~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~V 633 (1044)
++.+||.+|+..-+.++++.|++. .+..+..+||+++..+|.+++.....|..+|||+|..+-- +.+.++.+|
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~------f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lI 97 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYR------FGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLI 97 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHH------hCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEE
Confidence 568999999999999999999863 1345778999999999999988888999999999976543 456677766
Q ss_pred E
Q 001615 634 V 634 (1044)
Q Consensus 634 I 634 (1044)
|
T Consensus 98 I 98 (505)
T TIGR00595 98 I 98 (505)
T ss_pred E
Confidence 6
No 435
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=85.40 E-value=4.2 Score=50.57 Aligned_cols=119 Identities=24% Similarity=0.307 Sum_probs=63.1
Q ss_pred eEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCCccE
Q 001615 299 VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTRL 378 (1044)
Q Consensus 299 ~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~~~I 378 (1044)
..+..||||.|||-.+-+ +.+.++.. -..++..-.-+-.. ..-|++..|.+.| .|||.-
T Consensus 523 sFlF~GPTGVGKTELAka-LA~~Lfg~-----e~aliR~DMSEy~E--kHsVSrLIGaPPG-YVGyee------------ 581 (786)
T COG0542 523 SFLFLGPTGVGKTELAKA-LAEALFGD-----EQALIRIDMSEYME--KHSVSRLIGAPPG-YVGYEE------------ 581 (786)
T ss_pred EEEeeCCCcccHHHHHHH-HHHHhcCC-----CccceeechHHHHH--HHHHHHHhCCCCC-Cceecc------------
Confidence 688899999999944332 33333221 12333223222211 1235566666654 477753
Q ss_pred EEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcc----cCC----cc--cEEEcccCCChHHHHhh
Q 001615 379 LFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP----RRP----DL--RLILMSATINADLFSKY 448 (1044)
Q Consensus 379 ~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~----~~~----~~--qiilmSATl~~~~~~~~ 448 (1044)
-|.|...+.+.| |++|.+||+.. .+.|++-.+|..+-. -.. +. -+|+||.-+-.+.+.+.
T Consensus 582 ----GG~LTEaVRr~P----ySViLlDEIEK--AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~ 651 (786)
T COG0542 582 ----GGQLTEAVRRKP----YSVILLDEIEK--AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRD 651 (786)
T ss_pred ----ccchhHhhhcCC----CeEEEechhhh--cCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhh
Confidence 134555666554 89999999985 444544433333321 000 11 36677766666655544
No 436
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=85.26 E-value=1.1 Score=51.22 Aligned_cols=43 Identities=26% Similarity=0.351 Sum_probs=27.7
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHH
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRIS 342 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~l 342 (1044)
.+..++|+|||||||||.+-. ++..... ....+|+.+.-..+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~a-l~~~i~~---~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLAS-MIDYINK---NAAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHH-HHHhhCc---CCCCEEEEEcCChhh
Confidence 467899999999999987643 3443321 123467776654443
No 437
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=85.20 E-value=0.65 Score=43.95 Aligned_cols=17 Identities=41% Similarity=0.743 Sum_probs=14.2
Q ss_pred eEEEEecCCCchhchHH
Q 001615 299 VLVVSGETGCGKTTQLP 315 (1044)
Q Consensus 299 ~vii~a~TGSGKTt~~p 315 (1044)
+++|+|++||||||.+-
T Consensus 1 vI~I~G~~gsGKST~a~ 17 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAK 17 (121)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred CEEEECCCCCCHHHHHH
Confidence 47899999999997543
No 438
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=85.12 E-value=1.2 Score=50.49 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.3
Q ss_pred CeEEEEecCCCchhchHH
Q 001615 298 QVLVVSGETGCGKTTQLP 315 (1044)
Q Consensus 298 ~~vii~a~TGSGKTt~~p 315 (1044)
+.+++.||+|+|||+.+-
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 579999999999996554
No 439
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=84.94 E-value=2.3 Score=49.52 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=15.4
Q ss_pred CCeEEEEecCCCchhchHH
Q 001615 297 NQVLVVSGETGCGKTTQLP 315 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~p 315 (1044)
.+.+++.||+|||||+.+-
T Consensus 165 p~gvLL~GppGtGKT~lAk 183 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAK 183 (389)
T ss_pred CCceEEECCCCCChHHHHH
Confidence 4569999999999996543
No 440
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=84.74 E-value=1.3 Score=50.42 Aligned_cols=51 Identities=33% Similarity=0.395 Sum_probs=34.2
Q ss_pred HHHHHHHH-HHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHH
Q 001615 286 MKAEFLKA-VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRIS 342 (1044)
Q Consensus 286 ~Q~~~i~~-i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~l 342 (1044)
.+.+++.. +..+.+++|+|+|||||||.+-. ++... ....+++++.-+.|+
T Consensus 166 ~~~~~L~~~v~~~~~ili~G~tGsGKTTll~a-l~~~i-----~~~~riv~iEd~~El 217 (340)
T TIGR03819 166 GVARLLRAIVAARLAFLISGGTGSGKTTLLSA-LLALV-----APDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHHHHHhCCCeEEEECCCCCCHHHHHHH-HHccC-----CCCCcEEEECCccee
Confidence 44455544 56678999999999999976533 33322 124578888887776
No 441
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=84.67 E-value=2.6 Score=53.29 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=22.4
Q ss_pred hHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHH
Q 001615 383 TGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDL 424 (1044)
Q Consensus 383 ~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~ 424 (1044)
-|.|...+... .+++|+|||+|. ...++.-.+++.+
T Consensus 542 ~~~l~~~~~~~----p~~VvllDEiek--a~~~~~~~Ll~~l 577 (731)
T TIGR02639 542 GGLLTEAVRKH----PHCVLLLDEIEK--AHPDIYNILLQVM 577 (731)
T ss_pred hhHHHHHHHhC----CCeEEEEechhh--cCHHHHHHHHHhh
Confidence 34555655543 469999999995 4555554444433
No 442
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=84.40 E-value=0.49 Score=49.02 Aligned_cols=22 Identities=41% Similarity=0.730 Sum_probs=18.8
Q ss_pred HHHcCCeEEEEecCCCchhchH
Q 001615 293 AVAENQVLVVSGETGCGKTTQL 314 (1044)
Q Consensus 293 ~i~~~~~vii~a~TGSGKTt~~ 314 (1044)
.+..|.+++|+||.||||||.+
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlL 45 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLL 45 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHH
Confidence 3568999999999999999743
No 443
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=84.33 E-value=1.1 Score=46.08 Aligned_cols=41 Identities=22% Similarity=0.161 Sum_probs=30.7
Q ss_pred HcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccH
Q 001615 295 AENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRR 340 (1044)
Q Consensus 295 ~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r 340 (1044)
.....++|.+++|-||||++.-..+..+- .+.+|+++|=-+
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g-----~G~~V~ivQFlK 60 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVG-----HGKKVGVVQFIK 60 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHH-----CCCeEEEEEEec
Confidence 35568999999999999988877776652 245788887443
No 444
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=84.23 E-value=2.9 Score=50.69 Aligned_cols=124 Identities=24% Similarity=0.311 Sum_probs=68.2
Q ss_pred chHHHHHHHHHHH--------cCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHh
Q 001615 283 AFKMKAEFLKAVA--------ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSER 354 (1044)
Q Consensus 283 i~~~Q~~~i~~i~--------~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~ 354 (1044)
+-.+++.|++-+. .|..+.++||+|.|||. |+.+||+-+..++
T Consensus 328 LekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTS-----------------------------LgkSIA~al~Rkf 378 (782)
T COG0466 328 LEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTS-----------------------------LGKSIAKALGRKF 378 (782)
T ss_pred chhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchh-----------------------------HHHHHHHHhCCCE
Confidence 4457777777653 46789999999999992 3333333222111
Q ss_pred CCCCCcEEEEEEeccccCCCCcc-EEEEchHHHHHHHhcCCCCCccceEEechhhhc--cchhHHHHHHHHHHcc-----
Q 001615 355 GENLGETVGYQIRLESKRSAQTR-LLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHER--GMNEDFLLIILRDLLP----- 426 (1044)
Q Consensus 355 ~~~~g~~vgy~ir~~~~~~~~~~-I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR--~~~~d~ll~~lk~~~~----- 426 (1044)
+-..+| ++|.+......-+ -+=+-||++++-|..-... =-+++|||+|.. +...|..-++|.-+-+
T Consensus 379 ---vR~sLG-GvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~--NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~ 452 (782)
T COG0466 379 ---VRISLG-GVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVK--NPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNT 452 (782)
T ss_pred ---EEEecC-ccccHHHhccccccccccCChHHHHHHHHhCCc--CCeEEeechhhccCCCCCChHHHHHhhcCHhhcCc
Confidence 001111 2333332221111 2234599999988653311 136899999973 3555655555544322
Q ss_pred -------cCCcccEEEcccCCC
Q 001615 427 -------RRPDLRLILMSATIN 441 (1044)
Q Consensus 427 -------~~~~~qiilmSATl~ 441 (1044)
..=|+--|+|=||.|
T Consensus 453 F~DhYLev~yDLS~VmFiaTAN 474 (782)
T COG0466 453 FSDHYLEVPYDLSKVMFIATAN 474 (782)
T ss_pred hhhccccCccchhheEEEeecC
Confidence 112566677777754
No 445
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=84.22 E-value=1.4 Score=52.23 Aligned_cols=48 Identities=17% Similarity=0.358 Sum_probs=35.1
Q ss_pred HHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCcccEEE
Q 001615 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLIL 435 (1044)
Q Consensus 386 Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiil 435 (1044)
|.+...-.|.-.++.+.||||||. +.+.-.-++||.+..-.+.+..|+
T Consensus 107 i~e~v~y~P~~~ryKVyiIDEvHM--LS~~afNALLKTLEEPP~hV~FIl 154 (515)
T COG2812 107 IIEKVNYAPSEGRYKVYIIDEVHM--LSKQAFNALLKTLEEPPSHVKFIL 154 (515)
T ss_pred HHHHhccCCccccceEEEEecHHh--hhHHHHHHHhcccccCccCeEEEE
Confidence 445555566788999999999994 677777788888766555555555
No 446
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=84.22 E-value=2.7 Score=53.25 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=16.2
Q ss_pred cCCeEEEEecCCCchhchHH
Q 001615 296 ENQVLVVSGETGCGKTTQLP 315 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p 315 (1044)
.+..+++.||+|+|||+.+-
T Consensus 348 ~g~~i~l~GppG~GKTtl~~ 367 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQ 367 (784)
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 36689999999999995443
No 447
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=84.18 E-value=6.1 Score=50.96 Aligned_cols=60 Identities=23% Similarity=0.432 Sum_probs=33.4
Q ss_pred HHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccC--------Ccc--cEEEcccCCChHHHHhhh
Q 001615 384 GVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRR--------PDL--RLILMSATINADLFSKYF 449 (1044)
Q Consensus 384 g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~--------~~~--qiilmSATl~~~~~~~~f 449 (1044)
|.|...+...| +++|+|||++. ...++...++..+-.-+ -+. -+|+||..+..+.+.+.+
T Consensus 657 g~l~~~v~~~p----~~vlllDeiek--a~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~ 726 (852)
T TIGR03346 657 GQLTEAVRRKP----YSVVLFDEVEK--AHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELA 726 (852)
T ss_pred cHHHHHHHcCC----CcEEEEecccc--CCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhc
Confidence 44555554443 57999999995 45555544444432210 122 356677777666555443
No 448
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=84.08 E-value=2.6 Score=53.00 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=14.6
Q ss_pred eEEEEecCCCchhchHH
Q 001615 299 VLVVSGETGCGKTTQLP 315 (1044)
Q Consensus 299 ~vii~a~TGSGKTt~~p 315 (1044)
.++++||||+|||+.+-
T Consensus 490 ~~Lf~GP~GvGKT~lAk 506 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 58999999999996664
No 449
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=84.05 E-value=6.6 Score=48.27 Aligned_cols=122 Identities=13% Similarity=0.033 Sum_probs=79.8
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCC----CCcEEEEeecccccccCC
Q 001615 552 EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPP----NKRKIVLATNIAESSITI 627 (1044)
Q Consensus 552 ~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~----g~~kIlvaTniae~GidI 627 (1044)
...|.+||.+++++.++.+++.|... ..+.++ ..|..+. +..+++.|+. |...||++|+-+-+|||+
T Consensus 468 ~~~G~~lvLfTS~~~~~~~~~~l~~~------l~~~~l-~qg~~~~--~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv 538 (636)
T TIGR03117 468 KAQGGTLVLTTAFSHISAIGQLVELG------IPAEIV-IQSEKNR--LASAEQQFLALYANGIQPVLIAAGGAWTGIDL 538 (636)
T ss_pred HcCCCEEEEechHHHHHHHHHHHHhh------cCCCEE-EeCCCcc--HHHHHHHHHHhhcCCCCcEEEeCCcccccccc
Confidence 45689999999999999999999752 223333 5565532 2334455554 578999999999999999
Q ss_pred ----------CCeEEEEeCCCCcceeccccc--------cccccccccccHhhHHHhcccCCCC--C--CcEEEEecC
Q 001615 628 ----------DDVVYVVDCGKAKETSYDALN--------KLACLLPSWISKASAHQRRGRAGRV--Q--PGVCYKLYP 683 (1044)
Q Consensus 628 ----------p~V~~VId~g~~k~~~yd~~~--------~~~~l~~~~iS~a~~~QR~GRAGR~--~--~G~c~~L~t 683 (1044)
+.+..||..-+|--. -||.. +-......+-..-...|-+||.=|. - .|+...|=+
T Consensus 539 ~~~~~~p~~G~~Ls~ViI~kLPF~~-~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~ 615 (636)
T TIGR03117 539 THKPVSPDKDNLLTDLIITCAPFGL-NRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDG 615 (636)
T ss_pred CCccCCCCCCCcccEEEEEeCCCCc-CChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeC
Confidence 458899888888543 34421 1111112233334567888888887 3 465554433
No 450
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=84.03 E-value=3.7 Score=49.64 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=64.0
Q ss_pred HHHHHHHHHh-ccCCCC-EEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEee
Q 001615 541 VESTIEYICR-HEGDGA-ILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLAT 618 (1044)
Q Consensus 541 i~~~l~~i~~-~~~~g~-iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaT 618 (1044)
...++..+.. ...... .||++||++-+.++++.+...... ..++.+..++|+++...|...++. | ..|||||
T Consensus 84 ~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~--~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaT 157 (513)
T COG0513 84 LLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKN--LGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVAT 157 (513)
T ss_pred HHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhh--cCCccEEEEECCCCHHHHHHHHhc---C-CCEEEEC
Confidence 3345555542 122222 899999999999998888753221 116779999999999998877765 5 8999999
Q ss_pred c-----ccccc-cCCCCeEEEEe
Q 001615 619 N-----IAESS-ITIDDVVYVVD 635 (1044)
Q Consensus 619 n-----iae~G-idIp~V~~VId 635 (1044)
+ ..+++ +++..|.++|-
T Consensus 158 PGRllD~i~~~~l~l~~v~~lVl 180 (513)
T COG0513 158 PGRLLDLIKRGKLDLSGVETLVL 180 (513)
T ss_pred ccHHHHHHHcCCcchhhcCEEEe
Confidence 7 45555 88888988873
No 451
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=83.97 E-value=2.4 Score=53.85 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=15.5
Q ss_pred CCeEEEEecCCCchhchHHH
Q 001615 297 NQVLVVSGETGCGKTTQLPQ 316 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~p~ 316 (1044)
.+-+++.||+|||||+.+-.
T Consensus 487 ~~giLL~GppGtGKT~laka 506 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKA 506 (733)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45689999999999955433
No 452
>PRK10436 hypothetical protein; Provisional
Probab=83.92 E-value=1.3 Score=52.43 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=23.5
Q ss_pred HHHHHHHHH--HcCCeEEEEecCCCchhchHHHHHHHHH
Q 001615 286 MKAEFLKAV--AENQVLVVSGETGCGKTTQLPQFILEEE 322 (1044)
Q Consensus 286 ~Q~~~i~~i--~~~~~vii~a~TGSGKTt~~p~~il~~~ 322 (1044)
.+.+.+..+ ..+..++|+|||||||||.+- .+++..
T Consensus 205 ~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~-a~l~~~ 242 (462)
T PRK10436 205 AQLAQFRQALQQPQGLILVTGPTGSGKTVTLY-SALQTL 242 (462)
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCChHHHHH-HHHHhh
Confidence 344444433 345689999999999998663 344443
No 453
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=83.91 E-value=7.4 Score=49.11 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=15.2
Q ss_pred CCeEEEEecCCCchhchH
Q 001615 297 NQVLVVSGETGCGKTTQL 314 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~ 314 (1044)
..++++.||+|+|||+.+
T Consensus 207 ~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 458999999999999554
No 454
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=83.87 E-value=1.6 Score=49.84 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=21.9
Q ss_pred HHcCCeEEEEecCCCchhchHHHHHHHHHHh
Q 001615 294 VAENQVLVVSGETGCGKTTQLPQFILEEELS 324 (1044)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~p~~il~~~~~ 324 (1044)
|-.|+..+|.||.|+||||.+ +.|......
T Consensus 166 IGkGQR~lIvgppGvGKTTLa-K~Ian~I~~ 195 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLL-QNIANSITT 195 (416)
T ss_pred cccCceEEEeCCCCCChhHHH-HHHHHHHHh
Confidence 346899999999999999744 445555443
No 455
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=83.69 E-value=2.2 Score=43.22 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=26.4
Q ss_pred eEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccH
Q 001615 299 VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRR 340 (1044)
Q Consensus 299 ~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r 340 (1044)
-+.|..++|-||||++.-..+..+- .+.+|+++|=-+
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~-----~g~~v~ivQFlK 43 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALG-----HGKKVGVIQFIK 43 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHH-----CCCeEEEEEEec
Confidence 4667777999999988887777652 245787776433
No 456
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=83.69 E-value=2.6 Score=44.12 Aligned_cols=13 Identities=0% Similarity=0.217 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHcC
Q 001615 285 KMKAEFLKAVAEN 297 (1044)
Q Consensus 285 ~~Q~~~i~~i~~~ 297 (1044)
|+|.++-..|+.+
T Consensus 136 PfrSKLAA~I~gG 148 (317)
T KOG1596|consen 136 PFRSKLAAGILGG 148 (317)
T ss_pred hHHHHHHHHhhcC
Confidence 3677777677654
No 457
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=83.66 E-value=4 Score=50.50 Aligned_cols=119 Identities=18% Similarity=0.177 Sum_probs=90.1
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHccccCCC---------------CCCeEEEEecCCCChHHHHhhhCCCCCC----Cc
Q 001615 552 EGDGAILVFLTGWNDISKLLDQIKVNKFLGD---------------PNKFLVLPLHGSMPTINQREIFDRPPPN----KR 612 (1044)
Q Consensus 552 ~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~---------------~~~~~i~~lH~~l~~~er~~v~~~f~~g----~~ 612 (1044)
.-+.+.|||-.+....+-+..+|..-...+. ..+..-+-|.|..+..+|++....|..- .+
T Consensus 1140 eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaR 1219 (1567)
T KOG1015|consen 1140 EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRAR 1219 (1567)
T ss_pred HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeE
Confidence 3467899999888877777666652111000 1123456688999999999988887542 35
Q ss_pred EEEEeecccccccCCCCeEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCCCCcEEEEecChh
Q 001615 613 KIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRI 685 (1044)
Q Consensus 613 kIlvaTniae~GidIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~~G~c~~L~t~~ 685 (1044)
-.||+|-...-||++-..+-||.++..-+..||. +.+=|+=|-|-..|-..|||....
T Consensus 1220 l~LISTRAGsLGiNLvAANRVIIfDasWNPSyDt---------------QSIFRvyRfGQtKPvyiYRfiAqG 1277 (1567)
T KOG1015|consen 1220 LFLISTRAGSLGINLVAANRVIIFDASWNPSYDT---------------QSIFRVYRFGQTKPVYIYRFIAQG 1277 (1567)
T ss_pred EEEEeeccCccccceeecceEEEEecccCCccch---------------HHHHHHHhhcCcCceeehhhhhcc
Confidence 6899999999999999999999999888888774 456788888999999999998654
No 458
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.33 E-value=0.4 Score=49.12 Aligned_cols=131 Identities=11% Similarity=0.053 Sum_probs=62.3
Q ss_pred HHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEc-ccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccC
Q 001615 294 VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQ-PRRISAISVAARVSSERGENLGETVGYQIRLESKR 372 (1044)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~-P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~ 372 (1044)
+..|..+.|.|+.||||||.+-... ..+ ....+.|.+-- +..... +...... ..++|........
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~--G~~---~~~~G~i~~~g~~~~~~~-~~~~~~~--------~~i~~~~q~~~~~ 88 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIA--GLE---EPDSGSILIDGEDLTDLE-DELPPLR--------RRIGMVFQDFALF 88 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh--CCC---CCCceEEEECCEEccccc-hhHHHHh--------hcEEEEecCCccC
Confidence 4578999999999999997443322 111 11234555411 100000 0000111 1244432111111
Q ss_pred CC---CccEEE-EchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccCCc-ccEEEcccC
Q 001615 373 SA---QTRLLF-CTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPD-LRLILMSAT 439 (1044)
Q Consensus 373 ~~---~~~I~v-~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~-~qiilmSAT 439 (1044)
.. .-.+.+ ...|...+.......+.+-.++|+||-- .++|.+....+.+.+.....+ -+.++++..
T Consensus 89 ~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 159 (178)
T cd03229 89 PHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPT-SALDPITRREVRALLKSLQAQLGITVVLVTH 159 (178)
T ss_pred CCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 00 111322 5666654444333345677899999998 677777655554444332222 234444443
No 459
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=83.25 E-value=1.7 Score=46.45 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=25.8
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHHHHh
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEEELS 324 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~~~~ 324 (1044)
.|..++|.|++|||||+...|++.+.+..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~ 46 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN 46 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh
Confidence 57899999999999999999999988754
No 460
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=83.07 E-value=8.4 Score=44.53 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=13.8
Q ss_pred CCeEEEEecCCCchh
Q 001615 297 NQVLVVSGETGCGKT 311 (1044)
Q Consensus 297 ~~~vii~a~TGSGKT 311 (1044)
.+.++|.|++|+|||
T Consensus 113 ~nplfi~G~~GlGKT 127 (408)
T COG0593 113 YNPLFIYGGVGLGKT 127 (408)
T ss_pred CCcEEEECCCCCCHH
Confidence 567999999999999
No 461
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=83.06 E-value=6.7 Score=39.92 Aligned_cols=39 Identities=23% Similarity=0.178 Sum_probs=28.7
Q ss_pred CeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHH
Q 001615 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRI 341 (1044)
Q Consensus 298 ~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~ 341 (1044)
--++|--..|=||||++.=.++..+ |.+.+|+|+|=-+-
T Consensus 29 Gli~V~TG~GKGKTTAAlG~alRa~-----GhG~rv~vvQFiKg 67 (198)
T COG2109 29 GLIIVFTGNGKGKTTAALGLALRAL-----GHGLRVGVVQFIKG 67 (198)
T ss_pred CeEEEEecCCCChhHHHHHHHHHHh-----cCCCEEEEEEEeec
Confidence 3477777788999999988888764 34568888875443
No 462
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=82.93 E-value=0.9 Score=44.35 Aligned_cols=19 Identities=26% Similarity=0.639 Sum_probs=15.6
Q ss_pred eEEEEecCCCchhchHHHH
Q 001615 299 VLVVSGETGCGKTTQLPQF 317 (1044)
Q Consensus 299 ~vii~a~TGSGKTt~~p~~ 317 (1044)
+++++|++||||||.+-.+
T Consensus 1 lii~~G~pgsGKSt~a~~l 19 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRL 19 (143)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 4799999999999865544
No 463
>PRK14873 primosome assembly protein PriA; Provisional
Probab=82.92 E-value=2.5 Score=52.31 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=60.6
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeecccccccCCCCeEE
Q 001615 553 GDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVY 632 (1044)
Q Consensus 553 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~V~~ 632 (1044)
.++.+||.+|....+..+.+.|+... + ...+..+||+++..+|.+.+.....|..+|||-|--|-- .-+++...
T Consensus 187 ~Gk~vLvLvPEi~lt~q~~~rl~~~f--~---~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF-aP~~~LgL 260 (665)
T PRK14873 187 AGRGALVVVPDQRDVDRLEAALRALL--G---AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF-APVEDLGL 260 (665)
T ss_pred cCCeEEEEecchhhHHHHHHHHHHHc--C---CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-eccCCCCE
Confidence 35679999999999999999998632 1 134888999999999999999999999999999965543 24455555
Q ss_pred EE
Q 001615 633 VV 634 (1044)
Q Consensus 633 VI 634 (1044)
||
T Consensus 261 II 262 (665)
T PRK14873 261 VA 262 (665)
T ss_pred EE
Confidence 55
No 464
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=82.88 E-value=3 Score=52.92 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=16.8
Q ss_pred HcCCeEEEEecCCCchhchHH
Q 001615 295 AENQVLVVSGETGCGKTTQLP 315 (1044)
Q Consensus 295 ~~~~~vii~a~TGSGKTt~~p 315 (1044)
...+.+++.||+|||||+.+-
T Consensus 210 ~~~~giLL~GppGtGKT~lar 230 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAK 230 (733)
T ss_pred CCCceEEEECCCCCChHHHHH
Confidence 346789999999999996543
No 465
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=82.75 E-value=1.4 Score=48.14 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=24.5
Q ss_pred HcCCeEEEEecCCCchhchHHHHHHHHH
Q 001615 295 AENQVLVVSGETGCGKTTQLPQFILEEE 322 (1044)
Q Consensus 295 ~~~~~vii~a~TGSGKTt~~p~~il~~~ 322 (1044)
..+..++|+|++|||||+...|++.+.+
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a 61 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQA 61 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999888765
No 466
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=82.70 E-value=2.2 Score=42.94 Aligned_cols=102 Identities=15% Similarity=0.153 Sum_probs=52.9
Q ss_pred HHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEc-ccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccC
Q 001615 294 VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQ-PRRISAISVAARVSSERGENLGETVGYQIRLESKR 372 (1044)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~-P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~ 372 (1044)
+..|..+.|.|+.||||||.+-...-. .....+.|.+-- +.... ... +.. ...++|...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----~~~~~G~v~~~g~~~~~~--~~~----~~~----~~~i~~~~q----- 82 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGL-----YKPDSGEILVDGKEVSFA--SPR----DAR----RAGIAMVYQ----- 82 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCC-----CCCCCeEEEECCEECCcC--CHH----HHH----hcCeEEEEe-----
Confidence 457999999999999999755433211 111233444311 10000 000 001 012344322
Q ss_pred CCCccEEEEchHHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHH
Q 001615 373 SAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDL 424 (1044)
Q Consensus 373 ~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~ 424 (1044)
...|...+.......+.+-+++++||-= .++|.+....+.+.+
T Consensus 83 --------LS~G~~qrl~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l 125 (163)
T cd03216 83 --------LSVGERQMVEIARALARNARLLILDEPT-AALTPAEVERLFKVI 125 (163)
T ss_pred --------cCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHH
Confidence 4555544433333344566899999998 677776655554444
No 467
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=82.69 E-value=1.1 Score=46.93 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=20.1
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHHH
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEEE 322 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~~ 322 (1044)
+++.++|.||.|+||||.+-+...-..
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~ 54 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAI 54 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468899999999999976555443333
No 468
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=82.63 E-value=7 Score=46.94 Aligned_cols=132 Identities=23% Similarity=0.311 Sum_probs=77.9
Q ss_pred HHHHHHHc---CCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC-CCcEEEE
Q 001615 289 EFLKAVAE---NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN-LGETVGY 364 (1044)
Q Consensus 289 ~~i~~i~~---~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~-~g~~vgy 364 (1044)
..+++|.. +-.+-++|.-|-|||.++-+.|...... .-..|.|+.|.-+=...+.+-|.+-+..- --..+.|
T Consensus 264 ~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~----GysnIyvtSPspeNlkTlFeFv~kGfDaL~Yqeh~Dy 339 (1011)
T KOG2036|consen 264 TFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAF----GYSNIYVTSPSPENLKTLFEFVFKGFDALEYQEHVDY 339 (1011)
T ss_pred HHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhc----CcceEEEcCCChHHHHHHHHHHHcchhhhcchhhcch
Confidence 34455543 3467789999999998887777665422 13589999999998888888776533210 0011112
Q ss_pred EE-------------eccccCCCCccEEEEchHHHHHHHhcCC-CCCccceEEechhhhccchhHHHHHHHHHHcccCCc
Q 001615 365 QI-------------RLESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPD 430 (1044)
Q Consensus 365 ~i-------------r~~~~~~~~~~I~v~T~g~Ll~~l~~~~-~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~~ 430 (1044)
.+ |.+-.....--|-|..|. |. .|....+||||||-- +=+-+++.++-
T Consensus 340 ~iI~s~np~fkkaivRInifr~hrQtIQYi~P~--------D~~kl~q~eLlVIDEAAA------IPLplvk~Lig---- 401 (1011)
T KOG2036|consen 340 DIIQSTNPDFKKAIVRINIFREHRQTIQYISPH--------DHQKLGQAELLVIDEAAA------IPLPLVKKLIG---- 401 (1011)
T ss_pred hhhhhcChhhhhhEEEEEEeccccceeEeeccc--------hhhhccCCcEEEechhhc------CCHHHHHHhhc----
Confidence 11 111000111124444441 12 577889999999984 12334555542
Q ss_pred ccEEEcccCCCh
Q 001615 431 LRLILMSATINA 442 (1044)
Q Consensus 431 ~qiilmSATl~~ 442 (1044)
+-+|.|+.|++.
T Consensus 402 PylVfmaSTinG 413 (1011)
T KOG2036|consen 402 PYLVFMASTING 413 (1011)
T ss_pred ceeEEEeecccc
Confidence 358999999864
No 469
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=82.57 E-value=1.2 Score=48.07 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=27.0
Q ss_pred HHHHcCCeEEEEecCCCchhchHHHHHHHHHHh
Q 001615 292 KAVAENQVLVVSGETGCGKTTQLPQFILEEELS 324 (1044)
Q Consensus 292 ~~i~~~~~vii~a~TGSGKTt~~p~~il~~~~~ 324 (1044)
.-+..|+.++|+|+||+|||+...+++...+..
T Consensus 8 ~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~ 40 (242)
T cd00984 8 GGLQPGDLIIIAARPSMGKTAFALNIAENIAKK 40 (242)
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 345678899999999999999888888776654
No 470
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=82.54 E-value=4.7 Score=44.33 Aligned_cols=120 Identities=13% Similarity=0.158 Sum_probs=62.5
Q ss_pred HHHHHHHHHH-cCCeEEEEecCCCchhchHHHHHHHHHHhc-----cCCCCcEEEEE--cccHHHHHHHHHHHHHHhCCC
Q 001615 286 MKAEFLKAVA-ENQVLVVSGETGCGKTTQLPQFILEEELSS-----LRGADCNIICT--QPRRISAISVAARVSSERGEN 357 (1044)
Q Consensus 286 ~Q~~~i~~i~-~~~~vii~a~TGSGKTt~~p~~il~~~~~~-----~~~~~~~ilv~--~P~r~la~qva~rv~~~~~~~ 357 (1044)
.+.+.|+-+. .+-.++|.|+.|.||||..++..+...... .....++++++ .-.|+-+..-.+.|...++..
T Consensus 77 ~~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLs 156 (402)
T COG3598 77 NSPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLS 156 (402)
T ss_pred cChhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCC
Confidence 4556676654 455667779999999998887766544221 11123344443 456666666666677777665
Q ss_pred CCcEEEEEEeccccCCCCccEEEEchHHHHHHHhcCCCCCccceEEechhh
Q 001615 358 LGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIH 408 (1044)
Q Consensus 358 ~g~~vgy~ir~~~~~~~~~~I~v~T~g~Ll~~l~~~~~L~~~~~lIiDEaH 408 (1044)
.+..--..+..-+-.....++ ..| .|++.+.....-.+.+++|||-.=
T Consensus 157 Padvrn~dltd~~Gaa~~~d~--l~p-kl~rRfek~~~Q~rp~~vViDp~v 204 (402)
T COG3598 157 PADVRNMDLTDVSGAADESDV--LSP-KLYRRFEKILEQKRPDFVVIDPFV 204 (402)
T ss_pred hHhhhheeccccccCCCcccc--ccH-HHHHHHHHHHHHhCCCeEEEcchh
Confidence 443211111000000011122 234 455544433333456778887543
No 471
>CHL00095 clpC Clp protease ATP binding subunit
Probab=82.45 E-value=7.4 Score=50.02 Aligned_cols=57 Identities=25% Similarity=0.409 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCCCCccceEEechhhhccchhHHHHHHHHHHcccC----------CcccEEEcccCCChHHHH
Q 001615 384 GVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRR----------PDLRLILMSATINADLFS 446 (1044)
Q Consensus 384 g~Ll~~l~~~~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~----------~~~qiilmSATl~~~~~~ 446 (1044)
|.|...+...| +++|+|||+|. .+.++.-.+++.+-.-+ -.--+++||..+..+.+.
T Consensus 601 ~~l~~~~~~~p----~~VvllDeiek--a~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~ 667 (821)
T CHL00095 601 GQLTEAVRKKP----YTVVLFDEIEK--AHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIE 667 (821)
T ss_pred chHHHHHHhCC----CeEEEECChhh--CCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHH
Confidence 34555555443 58999999995 45565555554443210 012456677666655443
No 472
>CHL00176 ftsH cell division protein; Validated
Probab=82.45 E-value=4.6 Score=49.87 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=16.0
Q ss_pred CCeEEEEecCCCchhchHHH
Q 001615 297 NQVLVVSGETGCGKTTQLPQ 316 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~p~ 316 (1044)
.+.+++.||+|+|||+.+-.
T Consensus 216 p~gVLL~GPpGTGKT~LAra 235 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKA 235 (638)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45699999999999965533
No 473
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=82.45 E-value=2.6 Score=43.52 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=36.3
Q ss_pred HcCCeEEEEecCCCchhchHHHHHHHHHHhcc-----CCCCcEEEEEcccHHHHHHHHHHHHHHh
Q 001615 295 AENQVLVVSGETGCGKTTQLPQFILEEELSSL-----RGADCNIICTQPRRISAISVAARVSSER 354 (1044)
Q Consensus 295 ~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~-----~~~~~~ilv~~P~r~la~qva~rv~~~~ 354 (1044)
..+..+++.|++|+|||+.+.+++...+.... .....+|+++..--. ..++.+|+....
T Consensus 30 ~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~ 93 (193)
T PF13481_consen 30 PRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALL 93 (193)
T ss_dssp -TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHh
Confidence 36889999999999999988888887653210 113457777744322 556667776544
No 474
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=82.39 E-value=0.83 Score=60.45 Aligned_cols=171 Identities=16% Similarity=0.175 Sum_probs=102.4
Q ss_pred EEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCC-------ChHHHHhhhCCCCCCCcEEEEeecccccccCCCC
Q 001615 557 ILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSM-------PTINQREIFDRPPPNKRKIVLATNIAESSITIDD 629 (1044)
Q Consensus 557 iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l-------~~~er~~v~~~f~~g~~kIlvaTniae~GidIp~ 629 (1044)
-++|++-...+..+.++++...... ..+.+...-..+ ..-.|.+++..|.....++|++|.+++.|+|++-
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREIFSND--PLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred heeecccchHHHHHHHHHHHhhccC--cceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 4899999999998888887642211 112111111111 1224677888899999999999999999999999
Q ss_pred eEEEEeCCCCcceeccccccccccccccccHhhHHHhcccCCCCCCcEEEEecChh---------hHhhcCCCCCCcccc
Q 001615 630 VVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRI---------IHDAMLPYQLPEILR 700 (1044)
Q Consensus 630 V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~~G~c~~L~t~~---------~~~~l~~~~~pei~r 700 (1044)
++.||..+.|.... +|+|+.|||-+. +..+.++-.. .+.....-..|++..
T Consensus 373 ~~~~~~~~~~~~~~------------------~~vq~~~r~~~~--~~~~~i~~~t~~~~~~~~~s~~~~~~i~~~~l~~ 432 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYR------------------SYVQKKGRARAA--DSYLVILGETLSAVSLKNPSYAYTEQIPRPQLFL 432 (1606)
T ss_pred hhhheeccCcchHH------------------HHHHhhcccccc--hhhHHHHHhhhhhhhhcChhHhHHhhcccchhhc
Confidence 99999988887444 999999998553 1111111111 111111222333332
Q ss_pred ---CChHHHHHHHHhccCCchhhhhhcCCCCCCHHHHHHHHHHHHHcCCCCC
Q 001615 701 ---TPLQELCLHIKSLQLGTVGSFLSKALQPPDPLAVQNAIELLKTIGALDD 749 (1044)
Q Consensus 701 ---~~L~~~~L~~k~l~~~~~~~fl~~~~~pP~~~~i~~al~~L~~lgal~~ 749 (1044)
.++..+|-+...........++.-.++.|....+..+-..|..+|-+|+
T Consensus 433 ~~~~~v~~~~~~~e~~~~~~~~~~v~~~~~~p~~~~~~~~~~~l~~~~~~d~ 484 (1606)
T KOG0701|consen 433 RLDANVNKYCARAELLKHVPFLSTVVLPVNSPLKMCIVGLCLKLHKIGELDD 484 (1606)
T ss_pred ccccchHHHHHHHHhccCCCcceeEEEecCchHHHHHHHhHHHHHHhhhhhh
Confidence 2333444433333333344444445666766666667777777777653
No 475
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=82.38 E-value=1.4 Score=52.69 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHc--CCeEEEEecCCCchhchHH
Q 001615 284 FKMKAEFLKAVAE--NQVLVVSGETGCGKTTQLP 315 (1044)
Q Consensus 284 ~~~Q~~~i~~i~~--~~~vii~a~TGSGKTt~~p 315 (1044)
.+.+.+.+..+.. +..++|+|||||||||..-
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3444445544433 3468999999999998663
No 476
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=82.36 E-value=2.7 Score=42.24 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=19.5
Q ss_pred CCeEEEEecCCCchhchHHHHHHHHH
Q 001615 297 NQVLVVSGETGCGKTTQLPQFILEEE 322 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~p~~il~~~ 322 (1044)
++.++|+||.|||||+.+-...+-..
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~~ 46 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLALG 46 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999977655444433
No 477
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=82.22 E-value=0.94 Score=46.32 Aligned_cols=20 Identities=35% Similarity=0.659 Sum_probs=16.4
Q ss_pred CCeEEEEecCCCchhchHHH
Q 001615 297 NQVLVVSGETGCGKTTQLPQ 316 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~p~ 316 (1044)
|+.+++.||+||||||.+-.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~ 20 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKA 20 (180)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 56799999999999985433
No 478
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=82.22 E-value=4.6 Score=40.06 Aligned_cols=110 Identities=22% Similarity=0.241 Sum_probs=55.7
Q ss_pred eEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccC------
Q 001615 299 VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKR------ 372 (1044)
Q Consensus 299 ~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~------ 372 (1044)
.+.|+|++|+||||.+. -+.+.+...+-. -+-+++ | .|. .-|..+||.+.....-
T Consensus 7 ki~ITG~PGvGKtTl~~-ki~e~L~~~g~k-vgGf~t--~----------EVR-----~gGkR~GF~Ivdl~tg~~~~la 67 (179)
T COG1618 7 KIFITGRPGVGKTTLVL-KIAEKLREKGYK-VGGFIT--P----------EVR-----EGGKRIGFKIVDLATGEEGILA 67 (179)
T ss_pred EEEEeCCCCccHHHHHH-HHHHHHHhcCce-eeeEEe--e----------eee-----cCCeEeeeEEEEccCCceEEEE
Confidence 58899999999997654 455554332110 111222 2 222 2467788875432210
Q ss_pred -CCCccEEEEchHHHHHHHhcC------CCCCccceEEechhhhccchhHHHHHHHHHHccc
Q 001615 373 -SAQTRLLFCTTGVLLRQLVED------PDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPR 427 (1044)
Q Consensus 373 -~~~~~I~v~T~g~Ll~~l~~~------~~L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~ 427 (1044)
......-+.-.++.++.+..- ..+..-++|||||+--.-+-+--+...+..++..
T Consensus 68 ~~~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 68 RVGFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred EcCCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 011223333333333333210 1234468999999995445554444455555543
No 479
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=82.12 E-value=1.3 Score=51.98 Aligned_cols=45 Identities=27% Similarity=0.279 Sum_probs=32.9
Q ss_pred HHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHH
Q 001615 294 VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISA 343 (1044)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la 343 (1044)
-...++++|.|+||||||+.+...+.. +... +.+++|+=|..++.
T Consensus 39 ~~~~~h~~i~g~tGsGKt~~i~~l~~~-~~~~----~~~~vi~D~kg~~~ 83 (410)
T cd01127 39 DAEEAHTMIIGTTGTGKTTQIRELLAS-IRAR----GDRAIIYDPNGGFV 83 (410)
T ss_pred chhhccEEEEcCCCCCHHHHHHHHHHH-HHhc----CCCEEEEeCCcchh
Confidence 345779999999999999877665443 3332 34789999987764
No 480
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=81.99 E-value=1.5 Score=53.55 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=23.5
Q ss_pred HHHHHHHHH-HH-cCCeEEEEecCCCchhchHHHHHHHHH
Q 001615 285 KMKAEFLKA-VA-ENQVLVVSGETGCGKTTQLPQFILEEE 322 (1044)
Q Consensus 285 ~~Q~~~i~~-i~-~~~~vii~a~TGSGKTt~~p~~il~~~ 322 (1044)
+.+.+.+.. +. .+..++|+|||||||||.+- .++..+
T Consensus 302 ~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~-a~l~~~ 340 (564)
T TIGR02538 302 PDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLY-TALNIL 340 (564)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHH-HHHHhh
Confidence 344444443 33 35678999999999998763 344443
No 481
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=81.71 E-value=1.5 Score=48.26 Aligned_cols=27 Identities=22% Similarity=0.529 Sum_probs=20.2
Q ss_pred HHHH-HHcCCeEEEEecCCCchhchHHH
Q 001615 290 FLKA-VAENQVLVVSGETGCGKTTQLPQ 316 (1044)
Q Consensus 290 ~i~~-i~~~~~vii~a~TGSGKTt~~p~ 316 (1044)
+++. +.+++.++++||||||||+.+-.
T Consensus 25 ll~~l~~~~~pvLl~G~~GtGKT~li~~ 52 (272)
T PF12775_consen 25 LLDLLLSNGRPVLLVGPSGTGKTSLIQN 52 (272)
T ss_dssp HHHHHHHCTEEEEEESSTTSSHHHHHHH
T ss_pred HHHHHHHcCCcEEEECCCCCchhHHHHh
Confidence 4443 46788999999999999954433
No 482
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=81.68 E-value=3 Score=51.53 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=27.1
Q ss_pred HHHHHHHHHHc---CCeEEEEecCCCchhchHHHHHH
Q 001615 286 MKAEFLKAVAE---NQVLVVSGETGCGKTTQLPQFIL 319 (1044)
Q Consensus 286 ~Q~~~i~~i~~---~~~vii~a~TGSGKTt~~p~~il 319 (1044)
.+..+++.+.+ .|.++|++|.|+||||.+.++..
T Consensus 23 ~R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~ 59 (894)
T COG2909 23 VRPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRE 59 (894)
T ss_pred ccHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHH
Confidence 34556666654 57899999999999999999975
No 483
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=81.47 E-value=5.4 Score=44.94 Aligned_cols=41 Identities=29% Similarity=0.477 Sum_probs=28.4
Q ss_pred hhHHHHHHHhcCCCchHHHHHHHHHHHc-CCeEEEEecCCCchh
Q 001615 269 DSGKAMLSFREKLPAFKMKAEFLKAVAE-NQVLVVSGETGCGKT 311 (1044)
Q Consensus 269 ~~~~~~~~~r~~lpi~~~Q~~~i~~i~~-~~~vii~a~TGSGKT 311 (1044)
...+++++.--.||++- -+.+.-|+. -+-|+..||+|+|||
T Consensus 218 ~~AK~lL~EAVvlPi~m--Pe~F~GirrPWkgvLm~GPPGTGKT 259 (491)
T KOG0738|consen 218 HEAKKLLKEAVVLPIWM--PEFFKGIRRPWKGVLMVGPPGTGKT 259 (491)
T ss_pred HHHHHHHHHHHhhhhhh--HHHHhhcccccceeeeeCCCCCcHH
Confidence 34456777777788753 234444443 467999999999999
No 484
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=81.44 E-value=2.5 Score=49.36 Aligned_cols=56 Identities=18% Similarity=0.263 Sum_probs=48.2
Q ss_pred EEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEeec
Q 001615 557 ILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATN 619 (1044)
Q Consensus 557 iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaTn 619 (1044)
.|||.||++-+..+.+.|..... ..++.+..+.|+|....|++++.. .-.|+|||+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~---~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAE---KTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhcc---ccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 69999999999999999875322 368999999999999999999976 457999996
No 485
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=81.34 E-value=1.6 Score=46.33 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=23.8
Q ss_pred HcCCeEEEEecCCCchhchHHHHHHHHH
Q 001615 295 AENQVLVVSGETGCGKTTQLPQFILEEE 322 (1044)
Q Consensus 295 ~~~~~vii~a~TGSGKTt~~p~~il~~~ 322 (1044)
..+..++|.|++|||||+...+++.+..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~ 44 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETA 44 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3478999999999999998888877754
No 486
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=81.16 E-value=2.9 Score=53.23 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=16.5
Q ss_pred cCCeEEEEecCCCchhchHHH
Q 001615 296 ENQVLVVSGETGCGKTTQLPQ 316 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~ 316 (1044)
.+..+++.||+|+|||+.+-.
T Consensus 346 ~~~~lll~GppG~GKT~lAk~ 366 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKS 366 (775)
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 356799999999999965443
No 487
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=81.04 E-value=0.89 Score=43.27 Aligned_cols=16 Identities=44% Similarity=0.555 Sum_probs=13.4
Q ss_pred EEEEecCCCchhchHH
Q 001615 300 LVVSGETGCGKTTQLP 315 (1044)
Q Consensus 300 vii~a~TGSGKTt~~p 315 (1044)
++|+|.+||||||.+-
T Consensus 1 I~i~G~~GsGKtTia~ 16 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAK 16 (129)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred CEEECCCCCCHHHHHH
Confidence 6899999999997543
No 488
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=80.96 E-value=2.4 Score=43.47 Aligned_cols=43 Identities=9% Similarity=0.118 Sum_probs=25.9
Q ss_pred CCccceEEechhhhccchhHHHHHHHHHHcccCC-cccEEEcccC
Q 001615 396 LSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRP-DLRLILMSAT 439 (1044)
Q Consensus 396 L~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~~-~~qiilmSAT 439 (1044)
+.+-+++|+||.. .+++......+.+.+..... ...+|+.|--
T Consensus 114 ~~~p~llilDEp~-~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 114 IKPSPFYVLDEID-AALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 3566899999999 77776655554444433222 3456655443
No 489
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=80.94 E-value=2.9 Score=55.83 Aligned_cols=60 Identities=25% Similarity=0.286 Sum_probs=47.9
Q ss_pred HHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhC
Q 001615 294 VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERG 355 (1044)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~ 355 (1044)
+.-.+.++|.|+-|||||+....-++..+.. + ....+|+|+.-|+.+|.++.+||.+.+.
T Consensus 7 ~dp~~~~~~~a~agsgkt~~l~~~~~~~~~~-~-~~~~~i~~~t~t~~aa~em~~Ri~~~L~ 66 (1141)
T TIGR02784 7 SDPKTSAWVSANAGSGKTHVLTQRVIRLLLN-G-VPPSKILCLTYTKAAAAEMQNRVFDRLG 66 (1141)
T ss_pred cCCCCCEEEEEECCCCHHHHHHHHHHHHHHc-C-CCCCeEEEEecCHHHHHHHHHHHHHHHH
Confidence 4456788999999999998887777766543 2 2245899999999999999999988765
No 490
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=80.82 E-value=7.5 Score=40.55 Aligned_cols=41 Identities=17% Similarity=0.088 Sum_probs=25.0
Q ss_pred CccceEEechhhhccchhHHHHHHHHHHcccC---CcccEEEccc
Q 001615 397 SCVSHLLVDEIHERGMNEDFLLIILRDLLPRR---PDLRLILMSA 438 (1044)
Q Consensus 397 ~~~~~lIiDEaHeR~~~~d~ll~~lk~~~~~~---~~~qiilmSA 438 (1044)
.+-.++|+||.. .+++......+.+.+.... ...++|++|.
T Consensus 130 ~~p~illlDEP~-~glD~~~~~~~~~~l~~~~~~~~~~~~iii~t 173 (198)
T cd03276 130 MESPFRCLDEFD-VFMDMVNRKISTDLLVKEAKKQPGRQFIFITP 173 (198)
T ss_pred cCCCEEEecCcc-cccCHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 567899999999 7777765544444333321 2345666654
No 491
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=80.80 E-value=1.5 Score=51.40 Aligned_cols=26 Identities=31% Similarity=0.666 Sum_probs=21.2
Q ss_pred cCCeEEEEecCCCchhchHHHHHHHH
Q 001615 296 ENQVLVVSGETGCGKTTQLPQFILEE 321 (1044)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~p~~il~~ 321 (1044)
.+++++|+||+||||||.+-...-+.
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhh
Confidence 47899999999999999876655444
No 492
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=80.78 E-value=0.88 Score=48.16 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=19.0
Q ss_pred CCeEEEEecCCCchhchHHHHHHH
Q 001615 297 NQVLVVSGETGCGKTTQLPQFILE 320 (1044)
Q Consensus 297 ~~~vii~a~TGSGKTt~~p~~il~ 320 (1044)
++.++|+||.|+||||.+-...+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 378999999999999876555543
No 493
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=80.63 E-value=1.6 Score=45.43 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=18.5
Q ss_pred HHcCCeEEEEecCCCchhchHH
Q 001615 294 VAENQVLVVSGETGCGKTTQLP 315 (1044)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~p 315 (1044)
+..|+.+.|.|+.||||||.+-
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~ 53 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLN 53 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4578999999999999997443
No 494
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=80.62 E-value=2.7 Score=50.87 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=25.5
Q ss_pred CchHHHHHHHHHHHc------CCeEEEEecCCCchhchHHH
Q 001615 282 PAFKMKAEFLKAVAE------NQVLVVSGETGCGKTTQLPQ 316 (1044)
Q Consensus 282 pi~~~Q~~~i~~i~~------~~~vii~a~TGSGKTt~~p~ 316 (1044)
+..++..+.++.... .+.+++|||.|-||||.+-.
T Consensus 305 s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHV 345 (877)
T KOG1969|consen 305 SKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHV 345 (877)
T ss_pred ccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHH
Confidence 344455677776653 57899999999999985543
No 495
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=80.41 E-value=3.9 Score=40.89 Aligned_cols=139 Identities=15% Similarity=0.008 Sum_probs=0.0
Q ss_pred EEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCcEEEEEEeccccCCCCccEE
Q 001615 300 LVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTRLL 379 (1044)
Q Consensus 300 vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~r~la~qva~rv~~~~~~~~g~~vgy~ir~~~~~~~~~~I~ 379 (1044)
+.|-.++|.||||++.-..+..+ +.+.+|+++|=.+--..+=-..+-+.++ +..+-..-+..........--
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~-----~~g~~v~~vQFlKg~~~~gE~~~l~~l~---~v~~~~~g~~~~~~~~~~~~~ 76 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRAL-----GHGYRVGVVQFLKGGWKYGELKALERLP---NIEIHRMGRGFFWTTENDEED 76 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEEEeCCCCccCHHHHHHhCC---CcEEEECCCCCccCCCChHHH
Q ss_pred EEchHHHHHHHhcCCCCCccceEEechhhhc-cchhHHHHHHHHHHcccCCcccEEEcccCCChHHHH
Q 001615 380 FCTTGVLLRQLVEDPDLSCVSHLLVDEIHER-GMNEDFLLIILRDLLPRRPDLRLILMSATINADLFS 446 (1044)
Q Consensus 380 v~T~g~Ll~~l~~~~~L~~~~~lIiDEaHeR-~~~~d~ll~~lk~~~~~~~~~qiilmSATl~~~~~~ 446 (1044)
.......++....--....+++||+||+=-- ....--...++..+..+++..-+|+.+-..+.+.+.
T Consensus 77 ~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e 144 (159)
T cd00561 77 IAAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIE 144 (159)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
No 496
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=80.32 E-value=2.3 Score=44.53 Aligned_cols=45 Identities=24% Similarity=0.422 Sum_probs=0.0
Q ss_pred HHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEEccc
Q 001615 294 VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPR 339 (1044)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~~P~ 339 (1044)
+..+.+++|.|.|||||| .+...++..+..........+.++-|.
T Consensus 35 l~~~~h~li~G~tgsGKS-~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 35 LKKNPHLLIAGATGSGKS-TLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp GGGS-SEEEE--TTSSHH-HHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred cCCCceEEEEcCCCCCcc-HHHHHHHHHHHHHhcCCccEEEEEcCC
No 497
>PRK14530 adenylate kinase; Provisional
Probab=80.32 E-value=1.1 Score=47.43 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=0.0
Q ss_pred HcCCeEEEEecCCCchhchHHHHH
Q 001615 295 AENQVLVVSGETGCGKTTQLPQFI 318 (1044)
Q Consensus 295 ~~~~~vii~a~TGSGKTt~~p~~i 318 (1044)
+.+..++|.|++||||||+.-...
T Consensus 1 ~~~~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 1 MSQPRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
No 498
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.20 E-value=0.84 Score=49.80 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=0.0
Q ss_pred HcCCeEEEEecCCCchhchH
Q 001615 295 AENQVLVVSGETGCGKTTQL 314 (1044)
Q Consensus 295 ~~~~~vii~a~TGSGKTt~~ 314 (1044)
++..++++.||||||||+.+
T Consensus 95 L~KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eeeccEEEECCCCCcHHHHH
No 499
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=80.16 E-value=1.8 Score=45.58 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHcCCeEEEEecCCCchhchHHHHHHHHHHhccCCCCcEEEEE
Q 001615 294 VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICT 336 (1044)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~p~~il~~~~~~~~~~~~~ilv~ 336 (1044)
+..++.+.|.|++|||||+...+++.+.... +.+++++
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~-----g~~v~yi 46 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQ-----GKKVVYI 46 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhC-----CCeEEEE
No 500
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=80.07 E-value=4 Score=50.79 Aligned_cols=91 Identities=12% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCCCCEEEEeCCHHHHHHHHHHHHccccCCCCCCeEEEEecCCCChHHHHhhhCCCCCCCcEEEEee-c
Q 001615 541 VESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLAT-N 619 (1044)
Q Consensus 541 i~~~l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~i~~lH~~l~~~er~~v~~~f~~g~~kIlvaT-n 619 (1044)
+..++..+..-..+..++|-+||+.-+.+.++.+.. +....++.+..+||+++..++..+++...+|...|||+| .
T Consensus 271 ~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~---l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ 347 (630)
T TIGR00643 271 LVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRN---LLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHA 347 (630)
T ss_pred HHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHH---HhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHH
Q ss_pred ccccccCCCCeEEEE
Q 001615 620 IAESSITIDDVVYVV 634 (1044)
Q Consensus 620 iae~GidIp~V~~VI 634 (1044)
.+...+.+.++.+||
T Consensus 348 ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 348 LIQEKVEFKRLALVI 362 (630)
T ss_pred HHhccccccccceEE
Done!