BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001616
(1044 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 294 bits (753), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 248/863 (28%), Positives = 388/863 (44%), Gaps = 106/863 (12%)
Query: 116 GVANALGTNPEYGINGNDEDVSRRSQLFGANTYHKPPPKGLLHFVLEAFKDTTILILLVC 175
GV+ G P+ V R + +G N K L V+E F+D + ILL+
Sbjct: 18 GVSETTGLTPD--------QVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLA 69
Query: 176 AALSLGFGIKEHGAEEGWYEGG----SIFVAVF---LVIVVSAFSNFRQARQFDKLSKIS 228
A +S W+E G + FV F L+++ +A Q R + +
Sbjct: 70 ACISFVLA---------WFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEAL 120
Query: 229 NNIKVE---VVREARR--LQISIFDLVVGDIVFLKIGDQIPADG--LFLDGHSLQVDESS 281
+ E V R R+ +I D+V GDIV + +GD++PAD L + +L+VD+S
Sbjct: 121 KEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSI 180
Query: 282 MTGES----DHVE-------VDSTNNPFLFSGSKVADGYAQMLVVSVGMNTAWGEMMSSI 330
+TGES H E V+ LFSG+ +A G A +V + G++T G++ +
Sbjct: 181 LTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM 240
Query: 331 SSDSNERTPLQARLDKLTSTIGKXXXXXXXXXXXXXXXRYFTGNTKGENGIKEYNGSNTD 390
++ ++TPLQ +LD+ + K +F G + I+
Sbjct: 241 AATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIG-HFNDPVHGGSWIR-------- 291
Query: 391 IDDVFNXXXXXXXXXXXXXXXXXPEGLPLAVTLTLAYSMKRMMTDQAMVRKLPACETMGS 450
PEGLP +T LA +RM A+VR LP+ ET+G
Sbjct: 292 ------GAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGC 345
Query: 451 ATVICTDKTGTLTLNQMKVTKFW-----------LGQESIVQETYCKIASSIRD----LF 495
+VIC+DKTGTLT NQM V K + L + SI TY +++
Sbjct: 346 TSVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRS 405
Query: 496 HQGVGLNTTGSVSKLKPGSS--------VAEFSGSPTEKAVLSWAVLEMGMEMDKVKQKY 547
Q GL ++ L SS V E G TE A L+ V +M + +V+
Sbjct: 406 GQFDGLVELATICALCNDSSLDFNETKGVYEKVGEATETA-LTTLVEKMNVFNTEVRNLS 464
Query: 548 SILHVETFNS----------------EKKRSGVLIR----RKADNTTHIHWKGAAEIILA 587
+ NS ++K V +A + KGA E ++
Sbjct: 465 KVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVID 524
Query: 588 MCSHYYESNGVIKSMDGNGRSQMENIIH--GMAASSLRCIAFAYKQVSEEETAYNNDVKA 645
C +Y M G + ++ ++I G +LRC+A A + + D +
Sbjct: 525 RC-NYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSS 583
Query: 646 RQRLKEEGLTLLGIVGIKDPCRPGVQKAVEACQSAGVEIKMITGDNVFTAKAIATECGIL 705
R E LT +G+VG+ DP R V +++ C+ AG+ + MITGDN TA AI GI
Sbjct: 584 RFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 643
Query: 706 RLDQQXXXXXXXXXXXFRNYTDEERIQKVDKIRVMARSSPFDKLLMVQCLKKKGHVVAVT 765
+ + F + E+ + + AR P K +V+ L+ + A+T
Sbjct: 644 G-ENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMT 702
Query: 766 GDGTNDAPALKEADVGLSMGIQGTEVAKESSDIVILDDDFTSVATVLRWGRCVYTNIQKF 825
GDG NDAPALK+A++G++MG GT VAK +S++V+ DD+F+++ + GR +Y N+++F
Sbjct: 703 GDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQF 761
Query: 826 IQFQLTVNVAALVINFIAAVSAGEVPLTAVQLLWVNLIMDTLGALALATDRPTDELMQRP 885
I++ ++ NV +V F+ A L VQLLWVNL+ D L A AL + P ++M RP
Sbjct: 762 IRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRP 821
Query: 886 PVGRTEPLITNIMWRNLLSQALY 908
P EPLI+ ++ ++ Y
Sbjct: 822 PRSPKEPLISGWLFFRYMAIGGY 844
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 294 bits (753), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 248/863 (28%), Positives = 388/863 (44%), Gaps = 106/863 (12%)
Query: 116 GVANALGTNPEYGINGNDEDVSRRSQLFGANTYHKPPPKGLLHFVLEAFKDTTILILLVC 175
GV+ G P+ V R + +G N K L V+E F+D + ILL+
Sbjct: 17 GVSETTGLTPD--------QVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLA 68
Query: 176 AALSLGFGIKEHGAEEGWYEGG----SIFVAVF---LVIVVSAFSNFRQARQFDKLSKIS 228
A +S W+E G + FV F L+++ +A Q R + +
Sbjct: 69 ACISFVLA---------WFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEAL 119
Query: 229 NNIKVE---VVREARR--LQISIFDLVVGDIVFLKIGDQIPADG--LFLDGHSLQVDESS 281
+ E V R R+ +I D+V GDIV + +GD++PAD L + +L+VD+S
Sbjct: 120 KEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSI 179
Query: 282 MTGES----DHVE-------VDSTNNPFLFSGSKVADGYAQMLVVSVGMNTAWGEMMSSI 330
+TGES H E V+ LFSG+ +A G A +V + G++T G++ +
Sbjct: 180 LTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM 239
Query: 331 SSDSNERTPLQARLDKLTSTIGKXXXXXXXXXXXXXXXRYFTGNTKGENGIKEYNGSNTD 390
++ ++TPLQ +LD+ + K +F G + I+
Sbjct: 240 AATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIG-HFNDPVHGGSWIR-------- 290
Query: 391 IDDVFNXXXXXXXXXXXXXXXXXPEGLPLAVTLTLAYSMKRMMTDQAMVRKLPACETMGS 450
PEGLP +T LA +RM A+VR LP+ ET+G
Sbjct: 291 ------GAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGC 344
Query: 451 ATVICTDKTGTLTLNQMKVTKFW-----------LGQESIVQETYCKIASSIRD----LF 495
+VIC+DKTGTLT NQM V K + L + SI TY +++
Sbjct: 345 TSVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRS 404
Query: 496 HQGVGLNTTGSVSKLKPGSS--------VAEFSGSPTEKAVLSWAVLEMGMEMDKVKQKY 547
Q GL ++ L SS V E G TE A L+ V +M + +V+
Sbjct: 405 GQFDGLVELATICALCNDSSLDFNETKGVYEKVGEATETA-LTTLVEKMNVFNTEVRNLS 463
Query: 548 SILHVETFNS----------------EKKRSGVLIR----RKADNTTHIHWKGAAEIILA 587
+ NS ++K V +A + KGA E ++
Sbjct: 464 KVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVID 523
Query: 588 MCSHYYESNGVIKSMDGNGRSQMENIIH--GMAASSLRCIAFAYKQVSEEETAYNNDVKA 645
C +Y M G + ++ ++I G +LRC+A A + + D +
Sbjct: 524 RC-NYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSS 582
Query: 646 RQRLKEEGLTLLGIVGIKDPCRPGVQKAVEACQSAGVEIKMITGDNVFTAKAIATECGIL 705
R E LT +G+VG+ DP R V +++ C+ AG+ + MITGDN TA AI GI
Sbjct: 583 RFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 642
Query: 706 RLDQQXXXXXXXXXXXFRNYTDEERIQKVDKIRVMARSSPFDKLLMVQCLKKKGHVVAVT 765
+ + F + E+ + + AR P K +V+ L+ + A+T
Sbjct: 643 G-ENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMT 701
Query: 766 GDGTNDAPALKEADVGLSMGIQGTEVAKESSDIVILDDDFTSVATVLRWGRCVYTNIQKF 825
GDG NDAPALK+A++G++MG GT VAK +S++V+ DD+F+++ + GR +Y N+++F
Sbjct: 702 GDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQF 760
Query: 826 IQFQLTVNVAALVINFIAAVSAGEVPLTAVQLLWVNLIMDTLGALALATDRPTDELMQRP 885
I++ ++ NV +V F+ A L VQLLWVNL+ D L A AL + P ++M RP
Sbjct: 761 IRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRP 820
Query: 886 PVGRTEPLITNIMWRNLLSQALY 908
P EPLI+ ++ ++ Y
Sbjct: 821 PRSPKEPLISGWLFFRYMAIGGY 843
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 293 bits (750), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 247/864 (28%), Positives = 388/864 (44%), Gaps = 109/864 (12%)
Query: 116 GVANALGTNPEYGINGNDEDVSRRSQLFGANTYHKPPPKGLLHFVLEAFKDTTILILLVC 175
GV+ G P+ V R + +G N K L VLE F+D + ILL+
Sbjct: 17 GVSETTGLTPD--------QVKRHLEKYGHNELPAEEGKSLWELVLEQFEDLLVRILLLA 68
Query: 176 AALSLGFGIKEHGAEEGWYEGGSIFVAVF-------LVIVVSAFSNFRQARQFDKLSKIS 228
A +S W+E G V F L+++ +A Q R + +
Sbjct: 69 ACISFVLA---------WFEEGEETVTAFVEPFVILLILIANAIVGVWQERNAENAIEAL 119
Query: 229 NNIKVE---VVREARR--LQISIFDLVVGDIVFLKIGDQIPADG--LFLDGHSLQVDESS 281
+ E V R R+ +I D+V GDIV + +GD++PAD L + +L+VD+S
Sbjct: 120 KEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSI 179
Query: 282 MTGES----DHVE-------VDSTNNPFLFSGSKVADGYAQMLVVSVGMNTAWGEMMSSI 330
+TGES H E V+ LFSG+ +A G A +V + G+ T G++ +
Sbjct: 180 LTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQM 239
Query: 331 SSDSNERTPLQARLDKLTSTIGKXXXXXXXXXXXXXXXRYFTGNTKGENGIKEYNGSNTD 390
++ ++TPLQ +LD+ + K +F G + I+
Sbjct: 240 AATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIG-HFNDPVHGGSWIR-------- 290
Query: 391 IDDVFNXXXXXXXXXXXXXXXXXPEGLPLAVTLTLAYSMKRMMTDQAMVRKLPACETMGS 450
PEGLP +T LA +RM A+VR LP+ ET+G
Sbjct: 291 ------GAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGC 344
Query: 451 ATVICTDKTGTLTLNQMKVTKFW-----------LGQESIVQETYCKIASSIRD----LF 495
+VIC+DKTGTLT NQM V K + L + S+ TY +++
Sbjct: 345 TSVICSDKTGTLTTNQMSVCKMFIIDRIDGDLCLLNEFSVTGSTYAPEGEVLKNDKPVRS 404
Query: 496 HQGVGLNTTGSVSKLKPGSS--------VAEFSGSPTEKAVLSWAVLEMGMEMDKVKQKY 547
Q GL ++ L SS + E G TE A L+ V +M + +V+
Sbjct: 405 GQYDGLVELATICALCNDSSLDFNETKGIYEKVGEATETA-LTTLVEKMNVFNTEVRNLS 463
Query: 548 SILHVETFNS----------------EKKRSGVLI---RRKADNTTHIHWKGAAEIILAM 588
+ NS ++K V + +A + KGA E ++
Sbjct: 464 KVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSRAAVGNKMFVKGAPEGVIDR 523
Query: 589 CSHYYESNGVIKSMDGNGRSQMENIIH--GMAASSLRCIAFAYKQVS--EEETAYNNDVK 644
C +Y M G + ++ ++I G +LRC+A A + EE ++ K
Sbjct: 524 C-NYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSTK 582
Query: 645 ARQRLKEEGLTLLGIVGIKDPCRPGVQKAVEACQSAGVEIKMITGDNVFTAKAIATECGI 704
+ E LT +G+VG+ DP R V +++ C+ AG+ + MITGDN TA AI GI
Sbjct: 583 FMEY--ETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGI 640
Query: 705 LRLDQQXXXXXXXXXXXFRNYTDEERIQKVDKIRVMARSSPFDKLLMVQCLKKKGHVVAV 764
+ + F + E+ + + AR P K +V+ L+ + A+
Sbjct: 641 FG-ENEDVADRAYTGREFDDLPLAEQREACRRACCFARVEPTHKSKIVEYLQSFDEITAM 699
Query: 765 TGDGTNDAPALKEADVGLSMGIQGTEVAKESSDIVILDDDFTSVATVLRWGRCVYTNIQK 824
TGDG NDAPALK+A++G++MG GT VAK +S++V+ DD+F+++ + GR +Y N+++
Sbjct: 700 TGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQ 758
Query: 825 FIQFQLTVNVAALVINFIAAVSAGEVPLTAVQLLWVNLIMDTLGALALATDRPTDELMQR 884
FI++ ++ NV +V F+ A L VQLLWVNL+ D L A AL + P ++M R
Sbjct: 759 FIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDR 818
Query: 885 PPVGRTEPLITNIMWRNLLSQALY 908
PP EPLI+ ++ ++ Y
Sbjct: 819 PPRTPKEPLISGWLFFRYMAIGGY 842
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 291 bits (746), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 247/863 (28%), Positives = 387/863 (44%), Gaps = 106/863 (12%)
Query: 116 GVANALGTNPEYGINGNDEDVSRRSQLFGANTYHKPPPKGLLHFVLEAFKDTTILILLVC 175
GV+ G P+ V R + +G N K L V+E F+D + ILL+
Sbjct: 17 GVSETTGLTPD--------QVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLA 68
Query: 176 AALSLGFGIKEHGAEEGWYEGG----SIFVAVF---LVIVVSAFSNFRQARQFDKLSKIS 228
A +S W+E G + FV F L+++ +A Q R + +
Sbjct: 69 ACISFVLA---------WFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEAL 119
Query: 229 NNIKVE---VVREARR--LQISIFDLVVGDIVFLKIGDQIPADG--LFLDGHSLQVDESS 281
+ E V R R+ +I D+V GDIV + +GD++PAD L + +L+VD+S
Sbjct: 120 KEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSI 179
Query: 282 MTGES----DHVE-------VDSTNNPFLFSGSKVADGYAQMLVVSVGMNTAWGEMMSSI 330
+TGES H E V+ LFSG+ +A G A +V + G++T G++ +
Sbjct: 180 LTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM 239
Query: 331 SSDSNERTPLQARLDKLTSTIGKXXXXXXXXXXXXXXXRYFTGNTKGENGIKEYNGSNTD 390
++ ++TPLQ +LD+ + K +F G + I+
Sbjct: 240 AATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIG-HFNDPVHGGSWIR-------- 290
Query: 391 IDDVFNXXXXXXXXXXXXXXXXXPEGLPLAVTLTLAYSMKRMMTDQAMVRKLPACETMGS 450
PEGLP +T LA +RM A+VR LP+ ET+G
Sbjct: 291 ------GAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGC 344
Query: 451 ATVICTDKTGTLTLNQMKVTKFW-----------LGQESIVQETYCKIASSIRD----LF 495
+VIC+ KTGTLT NQM V K + L + SI TY +++
Sbjct: 345 TSVICSXKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRS 404
Query: 496 HQGVGLNTTGSVSKLKPGSS--------VAEFSGSPTEKAVLSWAVLEMGMEMDKVKQKY 547
Q GL ++ L SS V E G TE A L+ V +M + +V+
Sbjct: 405 GQFDGLVELATICALCNDSSLDFNETKGVYEKVGEATETA-LTTLVEKMNVFNTEVRNLS 463
Query: 548 SILHVETFNS----------------EKKRSGVLIR----RKADNTTHIHWKGAAEIILA 587
+ NS ++K V +A + KGA E ++
Sbjct: 464 KVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVID 523
Query: 588 MCSHYYESNGVIKSMDGNGRSQMENIIH--GMAASSLRCIAFAYKQVSEEETAYNNDVKA 645
C +Y M G + ++ ++I G +LRC+A A + + D +
Sbjct: 524 RC-NYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSS 582
Query: 646 RQRLKEEGLTLLGIVGIKDPCRPGVQKAVEACQSAGVEIKMITGDNVFTAKAIATECGIL 705
R E LT +G+VG+ DP R V +++ C+ AG+ + MITGDN TA AI GI
Sbjct: 583 RFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 642
Query: 706 RLDQQXXXXXXXXXXXFRNYTDEERIQKVDKIRVMARSSPFDKLLMVQCLKKKGHVVAVT 765
+ + F + E+ + + AR P K +V+ L+ + A+T
Sbjct: 643 G-ENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMT 701
Query: 766 GDGTNDAPALKEADVGLSMGIQGTEVAKESSDIVILDDDFTSVATVLRWGRCVYTNIQKF 825
GDG NDAPALK+A++G++MG GT VAK +S++V+ DD+F+++ + GR +Y N+++F
Sbjct: 702 GDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQF 760
Query: 826 IQFQLTVNVAALVINFIAAVSAGEVPLTAVQLLWVNLIMDTLGALALATDRPTDELMQRP 885
I++ ++ NV +V F+ A L VQLLWVNL+ D L A AL + P ++M RP
Sbjct: 761 IRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRP 820
Query: 886 PVGRTEPLITNIMWRNLLSQALY 908
P EPLI+ ++ ++ Y
Sbjct: 821 PRSPKEPLISGWLFFRYMAIGGY 843
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 266 bits (679), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 222/790 (28%), Positives = 366/790 (46%), Gaps = 90/790 (11%)
Query: 152 PPKGLLHFVLEAFKDTTIL--ILLVCAALSL-GFGIKEHGAEEGWYEGGSIFVAVFL--- 205
PP+G +V A + L ++ V AA+ L F I+ +E ++++A+ L
Sbjct: 92 PPRGTPEYVKFARQLAGGLQCLMWVAAAICLIAFAIQ--ASEGDLTTDDNLYLALALIAV 149
Query: 206 VIVVSAFSNFRQARQFDKLSKISNNI--KVEVVREARRLQISIFDLVVGDIVFLKIGDQI 263
V+V F +++ + + ++ N + + V+R+ + QI+ LVVGD+V +K GD++
Sbjct: 150 VVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEMKGGDRV 209
Query: 264 PADGLFLDGHSLQVDESSMTGESD---------HVEVDSTNNPFLFSGSKVADGYAQMLV 314
PAD L +VD SS+TGES+ H T N FS + +G AQ LV
Sbjct: 210 PADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFS-TMCLEGTAQGLV 268
Query: 315 VSVGMNTAWGEMMSSISSDSNERTPLQARLDKLTSTIGKXXXXXXXXXXXXXXXRYFTGN 374
V+ G T G + S S NE+TP+ ++ I +
Sbjct: 269 VNTGDRTIIGRIASLASGVENEKTPIAIEIEHFVDIIAGLAILFGATF-------FIVAM 321
Query: 375 TKGENGIKEYNGSNTDIDDVFNXXXXXXXXXXXXXXXXXPEGLPLAVTLTLAYSMKRMMT 434
G ++ VF PEGL VT+ L+ + KR+ +
Sbjct: 322 CIGYTFLRAM---------VF---------FMAIVVAYVPEGLLATVTVCLSLTAKRLAS 363
Query: 435 DQAMVRKLPACETMGSATVICTDKTGTLTLNQMKVTKFWLGQ--------ESIVQETYCK 486
+V+ L A ET+GS +VIC+DKTGTLT N+M V+ W E +T+ +
Sbjct: 364 KNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHSADTTEDQSGQTFDQ 423
Query: 487 IASSIRDLFHQGVGLNTTGSVSKLKPGSSVAEFS-----GSPTEKAVLSWAVLEMGMEMD 541
+ + R L + T + + K G G +E A+L ++ L +G M
Sbjct: 424 SSETWRALCR----VLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNAMG 479
Query: 542 KVKQKYSILHVETFNSEKK-RSGVLIRRKADNTTHIH-WKGAAEIILAMCSHYYESNGVI 599
++++ + FNS K + + + H+ KGA E +L CS G
Sbjct: 480 -YRERFPKVCEIPFNSTNKFQLSIHTLEDPRDPRHVLVMKGAPERVLERCSSIL-IKGQE 537
Query: 600 KSMDGNGRSQMENIIHGMAASSLRCIAFAYKQVSEEE--TAYNNDVKARQRLKEEGLTLL 657
+D R + + R + F +SE++ Y DV+A GL+
Sbjct: 538 LPLDEQWREAFQTAYLSLGGLGERVLGFCQLYLSEKDYPPGYAFDVEA-MNFPTSGLSFA 596
Query: 658 GIVGIKDPCRPGVQKAVEACQSAGVEIKMITGDNVFTAKAIATECGILR----------- 706
G+V + DP R V AV C++AG+ + M+TGD+ TAKAIA GI+
Sbjct: 597 GLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETVEDIAA 656
Query: 707 -----LDQQXXXXXXXXXXXFRNYTDEERIQKVDKIR-----VMARSSPFDKLLMVQCLK 756
+DQ D + + V+ +R V AR+SP KL++V+ +
Sbjct: 657 RLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQ 716
Query: 757 KKGHVVAVTGDGTNDAPALKEADVGLSMGIQGTEVAKESSDIVILDDDFTSVATVLRWGR 816
+ G +VAVTGDG ND+PALK+AD+G++MGI G++ AK ++D+++LDD+F S+ T + GR
Sbjct: 717 RLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGR 776
Query: 817 CVYTNIQKFIQFQLTVNVAALVINFIAAVSAGEVPLTAVQLLWVNLIMDTLGALALATDR 876
++ N++K I + LT N+ L I + +PL + +L++ L D +++LA ++
Sbjct: 777 LIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEK 836
Query: 877 PTDELMQRPP 886
++M P
Sbjct: 837 AESDIMHLRP 846
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 160/546 (29%), Positives = 271/546 (49%), Gaps = 58/546 (10%)
Query: 414 PEGLPLAVTLTLAYSMKRMMTDQAMVRKLPACETMGSATVICTDKTGTLTLNQMKVTKFW 473
PEGL VT+ L + KRM +V+ L A ET+GS + IC+DKTGTLT N+M V W
Sbjct: 308 PEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMW 367
Query: 474 LG---QESIVQETYCKIA-----------SSIRDLFHQGVGLNTTGSVSKLKPGSSVAEF 519
E+ E ++ S I L ++ V ++ LK
Sbjct: 368 SDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQENLPILKRA-----V 422
Query: 520 SGSPTEKAVLSWAVLEMGMEMDKVKQKYSILHVETFNSEKKRSGVLIRRKADNTTHIH-- 577
+G +E A+L L G + +++++Y+ + FNS K + I + + H
Sbjct: 423 AGDASESALLKCIELCCG-SVKEMRERYTKIVEIPFNSTNKYQ-LSIHKNPNTAEPRHLL 480
Query: 578 -WKGAAEIILAMCSHYYESNGVIKSMDGNGRSQMENIIHGMAASSLRCIAFAYKQVSEEE 636
KGA E IL CS +G + +D + +N + R + F + + +E+
Sbjct: 481 VMKGAPERILDRCSSIL-IHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQ 539
Query: 637 TAY-----NNDVKARQRLKEEGLTLLGIVGIKDPCRPGVQKAVEACQSAGVEIKMITGDN 691
+DV + L +G++ + DP R V AV C+SAG+++ M+TGD+
Sbjct: 540 FPEGFQFDTDDVN----FPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDH 595
Query: 692 VFTAKAIATECGIL-------------------RLDQQXXXXXXXXXXXFRNYTDEE--R 730
TAKAIA GI+ +++ + ++ T E+
Sbjct: 596 PITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDD 655
Query: 731 IQKVDKIRVMARSSPFDKLLMVQCLKKKGHVVAVTGDGTNDAPALKEADVGLSMGIQGTE 790
I K V AR+SP KL++V+ +++G +VAVTGDG ND+PA K+AD+G++MGI G++
Sbjct: 656 ILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSD 715
Query: 791 VAKESSDIVILDDDFTSVATVLRWGRCVYTNIQKFIQFQLTVNVAALVINFIAAVSAGEV 850
V+K+++D+++LDD+F S+ T + GR ++ N++K I + LT N+ + I ++ +
Sbjct: 716 VSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPL 775
Query: 851 PLTAVQLLWVNLIMDTLGALALATDRPTDELMQRPPVGRTEPLITNIMWRNLLSQALYQI 910
PL V +L ++L D + A++LA ++ ++M+R P P ++ L+S A QI
Sbjct: 776 PLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNEQLISMAYGQI 832
Query: 911 TILLIL 916
++ L
Sbjct: 833 GMIQAL 838
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 125/266 (46%), Gaps = 30/266 (11%)
Query: 104 DSHTLSLLGGVEGVANALGTNPEYGINGNDEDVSRRSQLF---GANTYHKPP--PKGLLH 158
D H LSL + + GT+ G+ +R +++ G N PP P+ +
Sbjct: 17 DDHKLSL----DELHRKYGTDLSRGLTP-----ARAAEILARDGPNALTPPPTTPE-WVK 66
Query: 159 FVLEAFKDTTILILLVCAALSLGFGIKEHGAEEGWYEGGSIFVAVFL---VIVVSAFSNF 215
F + F ++L+ + L +GI+ EE + ++++ V L VI+ FS +
Sbjct: 67 FCRQLFGGFSMLLWIGAILCFLAYGIQAATEEEP--QNDNLYLGVVLSAVVIITGCFSYY 124
Query: 216 RQARQFDKLSKISNNIKVE--VVREARRLQISIFDLVVGDIVFLKIGDQIPADGLFLDGH 273
++A+ + N + + V+R ++ I+ ++VVGD+V +K GD+IPAD + +
Sbjct: 125 QEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISAN 184
Query: 274 SLQVDESSMTGESDHV--EVDSTN-NPF-----LFSGSKVADGYAQMLVVSVGMNTAWGE 325
+VD SS+TGES+ D TN NP F + +G A+ +VV G T G
Sbjct: 185 GCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGR 244
Query: 326 MMSSISSDSNERTPLQARLDKLTSTI 351
+ + S +TP+ A ++ I
Sbjct: 245 IATLASGLEGGQTPIAAEIEHFIHII 270
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 213 bits (542), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 158/540 (29%), Positives = 265/540 (49%), Gaps = 46/540 (8%)
Query: 414 PEGLPLAVTLTLAYSMKRMMTDQAMVRKLPACETMGSATVICTDKTGTLTLNQMKVTKFW 473
PEGL VT+ L + KRM +V+ L A ET+GS + IC+DKTGTLT N+M V W
Sbjct: 338 PEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMW 397
Query: 474 LG---QESIVQETYCKIA-----------SSIRDLFHQGVGLNTTGSVSKLKPGSSVAEF 519
E+ E A S I L ++ V +V LK SVA
Sbjct: 398 FDNQIHEADTTENQSGAAFDKTSATWSALSRIAALCNRAVFQAGQDNVPILK--RSVA-- 453
Query: 520 SGSPTEKAVLSWAVLEMGMEMDKVKQKYSILHVETFNSEKKRSGVLIRRKADNTTHIH-W 578
G +E A+L L G + I+ + ++ K + + K+ + ++
Sbjct: 454 -GDASESALLKCIELCCGSVQGMRDRNPKIVEIPFNSTNKYQLSIHENEKSSESRYLLVM 512
Query: 579 KGAAEIILAMCSHYYESNGVIKSMDGNGRSQMENIIHGMAASSLRCIAFAYKQVSEEETA 638
KGA E IL CS NG + + + + +N + R + F + + E++
Sbjct: 513 KGAPERILDRCSTIL-LNGAEEPLKEDMKEAFQNAYLELGGLGERVLGFCHFALPEDKYN 571
Query: 639 YNNDVKARQ-RLKEEGLTLLGIVGIKDPCRPGVQKAVEACQSAGVEIKMITGDNVFTAKA 697
A + L +G++ + DP R V AV C+SAG+++ M+TGD+ TAKA
Sbjct: 572 EGYPFDADEPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKA 631
Query: 698 IATECGIL-------------------RLDQQXXXXXXXXXXXFRNYTDE--ERIQKVDK 736
IA GI+ +++ + ++ + E + I
Sbjct: 632 IAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDDILHYHT 691
Query: 737 IRVMARSSPFDKLLMVQCLKKKGHVVAVTGDGTNDAPALKEADVGLSMGIQGTEVAKESS 796
V AR+SP KL++V+ +++G +VAVTGDG ND+PALK+AD+G++MGI G++V+K+++
Sbjct: 692 EIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGISGSDVSKQAA 751
Query: 797 DIVILDDDFTSVATVLRWGRCVYTNIQKFIQFQLTVNVAALVINFIAAVSAGEVPLTAVQ 856
D+++LDD+F S+ T + GR ++ N++K I + LT N+ + + + +PL V
Sbjct: 752 DMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLVFIIGNVPLPLGTVT 811
Query: 857 LLWVNLIMDTLGALALATDRPTDELMQRPPVGRTEPLITNIMWRNLLSQALYQITILLIL 916
+L ++L D + A++LA ++ ++M+R P P ++ L+S A QI ++ L
Sbjct: 812 ILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNERLISMAYGQIGMIQAL 868
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 119/253 (47%), Gaps = 26/253 (10%)
Query: 104 DSHTLSLLGGVEGVANALGTNPEYGI-NGNDEDVSRRSQLFGANTYHKPP--PKGLLHFV 160
D H LSL + + N GT+ G+ N +++ R G N+ PP P+ + F
Sbjct: 47 DDHKLSL----DELHNKYGTDLTRGLTNARAKEILARD---GPNSLTPPPTTPE-WIKFC 98
Query: 161 LEAFKDTTILILLVCAALSLGFGIKEHGAEEGWYEGGSIFVAVFL---VIVVSAFSNFRQ 217
+ F +IL+ + L +GI+ A E ++++ V L VIV FS +++
Sbjct: 99 RQLFGGFSILLWIGAILCFLAYGIQ--AATEDEPANDNLYLGVVLSTVVIVTGCFSYYQE 156
Query: 218 ARQFDKLSKISNNIKVE--VVREARRLQISIFDLVVGDIVFLKIGDQIPADGLFLDGHSL 275
A+ + N + + V+R+ + I+ +V GD+V +K GD+IPAD + H
Sbjct: 157 AKSSRIMDSFKNMVPQQALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGC 216
Query: 276 QVDESSMTGESDHVEVD---STNNPF-----LFSGSKVADGYAQMLVVSVGMNTAWGEMM 327
+VD SS+TGES+ S+ NP F + +G A+ +VV G T G +
Sbjct: 217 KVDNSSLTGESEPQTRSPEFSSENPLETRNIAFFSTNCVEGTARGVVVYTGDRTVMGRIA 276
Query: 328 SSISSDSNERTPL 340
+ S RTP+
Sbjct: 277 TLASGLEVGRTPI 289
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 211 bits (537), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 159/546 (29%), Positives = 270/546 (49%), Gaps = 58/546 (10%)
Query: 414 PEGLPLAVTLTLAYSMKRMMTDQAMVRKLPACETMGSATVICTDKTGTLTLNQMKVTKFW 473
PEGL VT+ L + KRM +V+ L A ET+GS + IC+ KTGTLT N+M V W
Sbjct: 302 PEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSXKTGTLTQNRMTVAHMW 361
Query: 474 LG---QESIVQETYCKIA-----------SSIRDLFHQGVGLNTTGSVSKLKPGSSVAEF 519
E+ E ++ S I L ++ V ++ LK
Sbjct: 362 SDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQENLPILKRA-----V 416
Query: 520 SGSPTEKAVLSWAVLEMGMEMDKVKQKYSILHVETFNSEKKRSGVLIRRKADNTTHIH-- 577
+G +E A+L L G + +++++Y+ + FNS K + I + + H
Sbjct: 417 AGDASESALLKCIELCCG-SVKEMRERYTKIVEIPFNSTNKYQ-LSIHKNPNTAEPRHLL 474
Query: 578 -WKGAAEIILAMCSHYYESNGVIKSMDGNGRSQMENIIHGMAASSLRCIAFAYKQVSEEE 636
KGA E IL CS +G + +D + +N + R + F + + +E+
Sbjct: 475 VMKGAPERILDRCSSIL-IHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQ 533
Query: 637 TAY-----NNDVKARQRLKEEGLTLLGIVGIKDPCRPGVQKAVEACQSAGVEIKMITGDN 691
+DV + L +G++ + DP R V AV C+SAG+++ M+TGD+
Sbjct: 534 FPEGFQFDTDDVN----FPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDH 589
Query: 692 VFTAKAIATECGIL-------------------RLDQQXXXXXXXXXXXFRNYTDEE--R 730
TAKAIA GI+ +++ + ++ T E+
Sbjct: 590 PITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDD 649
Query: 731 IQKVDKIRVMARSSPFDKLLMVQCLKKKGHVVAVTGDGTNDAPALKEADVGLSMGIQGTE 790
I K V AR+SP KL++V+ +++G +VAVTGDG ND+PA K+AD+G++MGI G++
Sbjct: 650 ILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSD 709
Query: 791 VAKESSDIVILDDDFTSVATVLRWGRCVYTNIQKFIQFQLTVNVAALVINFIAAVSAGEV 850
V+K+++D+++LDD+F S+ T + GR ++ N++K I + LT N+ + I ++ +
Sbjct: 710 VSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPL 769
Query: 851 PLTAVQLLWVNLIMDTLGALALATDRPTDELMQRPPVGRTEPLITNIMWRNLLSQALYQI 910
PL V +L ++L D + A++LA ++ ++M+R P P ++ L+S A QI
Sbjct: 770 PLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNEQLISMAYGQI 826
Query: 911 TILLIL 916
++ L
Sbjct: 827 GMIQAL 832
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 125/266 (46%), Gaps = 30/266 (11%)
Query: 104 DSHTLSLLGGVEGVANALGTNPEYGINGNDEDVSRRSQLF---GANTYHKPP--PKGLLH 158
D H LSL + + GT+ G+ +R +++ G N PP P+ +
Sbjct: 11 DDHKLSL----DELHRKYGTDLSRGLTP-----ARAAEILARDGPNALTPPPTTPE-WVK 60
Query: 159 FVLEAFKDTTILILLVCAALSLGFGIKEHGAEEGWYEGGSIFVAVFL---VIVVSAFSNF 215
F + F ++L+ + L +GI+ EE + ++++ V L VI+ FS +
Sbjct: 61 FCRQLFGGFSMLLWIGAILCFLAYGIQAATEEEP--QNDNLYLGVVLSAVVIITGCFSYY 118
Query: 216 RQARQFDKLSKISNNIKVE--VVREARRLQISIFDLVVGDIVFLKIGDQIPADGLFLDGH 273
++A+ + N + + V+R ++ I+ ++VVGD+V +K GD+IPAD + +
Sbjct: 119 QEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISAN 178
Query: 274 SLQVDESSMTGESDHV--EVDSTN-NPF-----LFSGSKVADGYAQMLVVSVGMNTAWGE 325
+VD SS+TGES+ D TN NP F + +G A+ +VV G T G
Sbjct: 179 GCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGR 238
Query: 326 MMSSISSDSNERTPLQARLDKLTSTI 351
+ + S +TP+ A ++ I
Sbjct: 239 IATLASGLEGGQTPIAAEIEHFIHII 264
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 152 bits (385), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 157/638 (24%), Positives = 277/638 (43%), Gaps = 88/638 (13%)
Query: 232 KVEVVREARRLQISIFDLVVGDIVFLKIGDQIPADGLFLDGHSLQVDESSMTGESDHVEV 291
K +V+R+ + + LV GDIV +K+GD IPAD L+G L+VD+S++TGES V
Sbjct: 131 KTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPV-- 188
Query: 292 DSTNNPF--LFSGSKVADGYAQMLVVSVGMNTAWGEMMSSISSDSNERTPLQARLDKLTS 349
T +P +FSGS G + +V++ G++T +G+ + S +N+ Q K+ +
Sbjct: 189 --TKHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDS-TNQVGHFQ----KVLT 241
Query: 350 TIGKXXX-XXXXXXXXXXXXRYFTGNTKGENGIKEYNGSNTDIDDVFNXXXXXXXXXXXX 408
IG Y K +GI D++
Sbjct: 242 AIGNFCICSIAIGMVIEIIVMYPIQRRKYRDGI----------DNLL-----------VL 280
Query: 409 XXXXXPEGLPLAVTLTLAYSMKRMMTDQAMVRKLPACETMGSATVICTDKTGTLTLNQMK 468
P +P +++T+A R+ A+ +++ A E M V+C+DKTGTLTLN++
Sbjct: 281 LIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLS 340
Query: 469 VTKFWLGQESIVQETYCKIASSIRDLFHQGVGLNTTGSVSKLKPGSSVAEFSGSPTEKAV 528
V K + E +CK + L A + +
Sbjct: 341 VDKNLV-------EVFCKGVEKDQVLLF--------------------AAMASRVENQDA 373
Query: 529 LSWAVLEMGMEMDKVKQKYSILHVETFNSEKKRSGVLIRRKADNTTHIHWKGAAEIILAM 588
+ A++ M + + + +H FN KR+ + + N + KGA E IL +
Sbjct: 374 IDAAMVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDGSGNWHRVS-KGAPEQILEL 432
Query: 589 CSHYYESNGVIKSMDGNGRSQMENIIHGMAASSLRCIAFAYKQVSEEETAYNNDVKARQR 648
SN + K ++ +II A LR +A A +QV E+T +
Sbjct: 433 AK---ASNDLSK--------KVLSIIDKYAERGLRSLAVA-RQVVPEKTKESPGAP---- 476
Query: 649 LKEEGLTLLGIVGIKDPCRPGVQKAVEACQSAGVEIKMITGDNVFTAKAIATECGI-LRL 707
+G++ + DP R + + + GV +KMITGD + K G+ +
Sbjct: 477 -----WEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNM 531
Query: 708 DQQXXXXXXXXXXXFRNYTDEERIQKVDKIRVMARSSPFDKLLMVQCLKKKGHVVAVTGD 767
+ EE I+K D A P K +V+ L+++ H+V +TGD
Sbjct: 532 YPSSALLGTHKDANLASIPVEELIEKADG---FAGVFPEHKYEIVKKLQERKHIVGMTGD 588
Query: 768 GTNDAPALKEADVGLSMGIQGTEVAKESSDIVILDDDFTSVATVLRWGRCVYTNIQKFIQ 827
G NDAPALK+AD+G+++ T+ A+ +SDIV+ + + + + + R ++ ++ +
Sbjct: 589 GVNDAPALKKADIGIAVA-DATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTI 647
Query: 828 FQLTVNVAALVINFIAAVSAGEVPLTAVQLLWVNLIMD 865
+ +++ + +V F+ E +A +L + ++ D
Sbjct: 648 YAVSITI-RIVFGFMLIALIWEFDFSAFMVLIIAILND 684
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 170/710 (23%), Positives = 294/710 (41%), Gaps = 109/710 (15%)
Query: 134 EDVSRRSQLFGANTYHKPPPKGLLHFVLEAFKDTTILILLVCAALSLGFGIKEHGAEEGW 193
E+V +R + +G N + L F L F ++ A L+ G E W
Sbjct: 91 EEVVQRRRKYGLNQMKEEKENHFLKF-LGFFVGPIQFVMEGAAVLAAGL--------EDW 141
Query: 194 YEGGSIFVAVFLVIVVSAFSNFRQARQFDKLSKISNNIKVEVVREARRLQISIFDLVVGD 253
+ G I + L VV F+ D+L K + +K V+R+ +I ++V GD
Sbjct: 142 VDFGVICGLLLLNAVVGFVQEFQAGSIVDELKK-TLALKAVVLRDGTLKEIEAPEVVPGD 200
Query: 254 IVFLKIGDQIPADG-LFLDGHSLQVDESSMTGESDHVEVDSTNNPFLFSGSKVADGYAQM 312
I+ ++ G IPADG + D LQVD+S++TGES + VD +F+ S V G A +
Sbjct: 201 ILQVEEGTIIPADGRIVTDDAFLQVDQSALTGES--LAVDKHKGDQVFASSAVKRGEAFV 258
Query: 313 LVVSVGMNTAWGEMMSSISSDSNERTPLQARLDKLTSTIGKXXXXXXXXXXXXXXXRYFT 372
++ + G NT G + +++ S L+ + + + ++
Sbjct: 259 VITATGDNTFVGRAAALVNAASGGSGHFTEVLNGIGTIL---LILVIFTLLIVWVSSFYR 315
Query: 373 GNTKGENGIKEYNGSNTDIDDVFNXXXXXXXXXXXXXXXXXPEGLPLAVTLTLAYSMKRM 432
N + I E+ + T I P GLP VT T+A +
Sbjct: 316 SNPIVQ--ILEFTLAITIIG--------------------VPVGLPAVVTTTMAVGAAYL 353
Query: 433 MTDQAMVRKLPACETMGSATVICTDKTGTLTLNQMKVTKFWLGQESIVQETYCKIASSIR 492
+A+V+KL A E++ ++C+DKTGTLT N++ + + Y
Sbjct: 354 AKKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSL-----------HDPYTVAGVDPE 402
Query: 493 DLFHQGVGLNTTGSVSKLKPG------SSVAEFSGSPTEKAVLSWAVLEMGMEMDKVKQK 546
DL L + S+ K G + + P K+VLS K
Sbjct: 403 DLM-----LTACLAASRKKKGIDAIDKAFLKSLKYYPRAKSVLS---------------K 442
Query: 547 YSILHVETFNS-EKKRSGVLIRRKADNTTHIHWKGAAEIILAMCSHYYESNGVIKSMDGN 605
Y +L F+ KK V+ + + T + KGA +L E + + + +D
Sbjct: 443 YKVLQFHPFDPVSKKVVAVVESPQGERITCV--KGAPLFVLKTVE---EDHPIPEEVD-- 495
Query: 606 GRSQMENIIHGMAASSLRCIAFAYKQVSEEETAYNNDVKARQRLKEEGLTLLGIVGIKDP 665
+N + A R + A K+ E +LGI+ DP
Sbjct: 496 --QAYKNKVAEFATRGFRSLGVARKR------------------GEGSWEILGIMPCMDP 535
Query: 666 CRPGVQKAVEACQSAGVEIKMITGDNVFTAKAIATECGILRLDQQXXXXXXXXXXXFRNY 725
R K V ++ G+ IKM+TGD V A+ + + G L +
Sbjct: 536 PRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLG---LGTNIYNAERLGLGGGGDM 592
Query: 726 TDEERIQKVDKIRVMARSSPFDKLLMVQCLKKKGHVVAVTGDGTNDAPALKEADVGLSMG 785
E V+ A P K +V+ L+++G++VA+TGDG NDAP+LK+AD G++
Sbjct: 593 PGSEVYDFVEAADGFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIA-- 650
Query: 786 IQG-TEVAKESSDIVILDDDFTSVATVLRWGRCVYTNIQKFIQFQLTVNV 834
++G ++ A+ ++DIV L ++ L+ R ++ + ++ +++ +++
Sbjct: 651 VEGSSDAARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSI 700
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 86/173 (49%), Gaps = 33/173 (19%)
Query: 662 IKDPCRPGVQKAVEACQSAGVEIKMITGDNVFTAKAIATECGILRLDQQXXXXXXXXXXX 721
++DP + + + Q +G+EI M+TGD+ TA+A+A GI
Sbjct: 551 VEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIK---------------- 594
Query: 722 FRNYTDEERIQKVDKIRVMARSSPFDKLLMVQCLKKKGHVVAVTGDGTNDAPALKEADVG 781
+V+A P DK +V LK KG +VA+ GDG NDAPAL +AD+G
Sbjct: 595 ----------------KVVAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAKADIG 638
Query: 782 LSMGIQGTEVAKESSDIVILDDDFTSVATVLRWGRCVYTNIQKFIQFQLTVNV 834
++MG GT+VA ES+ + +L D +A R +NI++ + F NV
Sbjct: 639 IAMG-TGTDVAIESAGVTLLHGDLRGIAKARRLSESTMSNIRQNLFFAFIYNV 690
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 243 QISIFDLVVGDIVFLKIGDQIPADGLFLDGHSLQVDESSMTGESDHVEVDSTNNPFLFSG 302
++S+ ++ VGD++ ++ G++IP DG +G S VDES +TGE V +++ +
Sbjct: 238 EVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF-VDESMVTGEPIPVAKEASAK--VIGA 294
Query: 303 SKVADGYAQMLVVSVGMNTAWGEMMSSISSDSNERTPLQARLDKLT 348
+ G M + VG +T ++ +S R P+Q D ++
Sbjct: 295 TINQTGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVS 340
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 414 PEGLPLAVTLTLAYSMKRMMTDQAMVRKLPACETMGSATVICTDKTGTLTLNQMKVTKF 472
P L LA +++ + + +++ A E M + DKTGTLT K+T+
Sbjct: 383 PCALGLATPMSIMVGVGKGAQSGVLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRI 441
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 99/186 (53%), Gaps = 43/186 (23%)
Query: 647 QRLKEEGLTLL---------GIVGIKDPCRPGVQKAVEACQSAGVEIKMITGDNVFTAKA 697
++LK++G T++ G++ + D RP ++A+ ++ G++ M+TGDN F AK
Sbjct: 117 EKLKQQGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKW 176
Query: 698 IATECGILRLDQQXXXXXXXXXXXFRNYTDEERIQKVDKIRVMARSSPFDKLLMVQCLKK 757
+A E G LD +Y A P +K V+ +++
Sbjct: 177 VAEELG---LD---------------DY--------------FAEVLPHEKAEKVKEVQQ 204
Query: 758 KGHVVAVTGDGTNDAPALKEADVGLSMGIQGTEVAKESSDIVILDDDFTSVATVLRWGRC 817
K +V A+ GDG NDAPAL +ADVG+++G GT+VA E++DIV++ +D VA ++ R
Sbjct: 205 K-YVTAMVGDGVNDAPALAQADVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRK 262
Query: 818 VYTNIQ 823
Y+ ++
Sbjct: 263 TYSKLE 268
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 43/186 (23%)
Query: 647 QRLKEEGLTLL---------GIVGIKDPCRPGVQKAVEACQSAGVEIKMITGDNVFTAKA 697
++LK++G T++ G++ + D RP ++A+ ++ G++ M+TGDN F AK
Sbjct: 117 EKLKQQGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKW 176
Query: 698 IATECGILRLDQQXXXXXXXXXXXFRNYTDEERIQKVDKIRVMARSSPFDKLLMVQCLKK 757
+A E G LD +Y A P +K V+ +++
Sbjct: 177 VAEELG---LD---------------DY--------------FAEVLPHEKAEKVKEVQQ 204
Query: 758 KGHVVAVTGDGTNDAPALKEADVGLSMGIQGTEVAKESSDIVILDDDFTSVATVLRWGRC 817
K +V A+ GDG NDAPAL +ADVG+++G GT+VA E++DIV++ +D VA ++ R
Sbjct: 205 K-YVTAMVGDGVNDAPALAQADVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRK 262
Query: 818 VYTNIQ 823
Y+
Sbjct: 263 TYSKFH 268
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 103/208 (49%), Gaps = 44/208 (21%)
Query: 637 TAYNNDVK-ARQRLKEEGLTLL---------GIVGIKDPCRPGVQKAVEACQSAGVEIKM 686
A +N+V+ A ++L+ E T + GI+ + D + + AV+ + G+++ M
Sbjct: 419 VAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGM 478
Query: 687 ITGDNVFTAKAIATECGILRLDQQXXXXXXXXXXXFRNYTDEERIQKVDKIRVMARSSPF 746
ITGDN +A+AI+ E L LD V+A P
Sbjct: 479 ITGDNWRSAEAISRE---LNLDL-----------------------------VIAEVLPH 506
Query: 747 DKLLMVQCLKKKGHVVAVTGDGTNDAPALKEADVGLSMGIQGTEVAKESSDIVILDDDFT 806
K V+ L+ K VVA GDG NDAPAL +AD+G+++G G++VA ES DIV++ DD
Sbjct: 507 QKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLR 564
Query: 807 SVATVLRWGRCVYTNIQKFIQFQLTVNV 834
V ++ R + I++ I + L NV
Sbjct: 565 DVVAAIQLSRKTMSKIKQNIFWALIYNV 592
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 69/141 (48%), Gaps = 4/141 (2%)
Query: 209 VSAFSNFRQARQFDKLSKISNNIKVEVVREARRLQISIFDLVVGDIVFLKIGDQIPADGL 268
+ A + R KL + V V+R+ + + + + ++ VGDIV ++ G++IP DG+
Sbjct: 112 LEARAKSRTGEAIKKLVGLQAKTAV-VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGV 170
Query: 269 FLDGHSLQVDESSMTGESDHVEVDSTNNPFLFSGSKVADGYAQMLVVSVGMNTAWGEMMS 328
++G S VDES ++GE V V + +F + G ++ VG T +++
Sbjct: 171 VVEGES-YVDESMISGEP--VPVLKSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVK 227
Query: 329 SISSDSNERTPLQARLDKLTS 349
+ + P+Q DK+ +
Sbjct: 228 LVEDAMGSKPPIQRLADKVVA 248
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 103/208 (49%), Gaps = 44/208 (21%)
Query: 637 TAYNNDVK-ARQRLKEEGLTLL---------GIVGIKDPCRPGVQKAVEACQSAGVEIKM 686
A +N+V+ A ++L+ E T + GI+ + D + + AV+ + G+++ M
Sbjct: 497 VAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGM 556
Query: 687 ITGDNVFTAKAIATECGILRLDQQXXXXXXXXXXXFRNYTDEERIQKVDKIRVMARSSPF 746
ITGDN +A+AI+ E L LD V+A P
Sbjct: 557 ITGDNWRSAEAISRE---LNLDL-----------------------------VIAEVLPH 584
Query: 747 DKLLMVQCLKKKGHVVAVTGDGTNDAPALKEADVGLSMGIQGTEVAKESSDIVILDDDFT 806
K V+ L+ K VVA GDG NDAPAL +AD+G+++G G++VA ES DIV++ DD
Sbjct: 585 QKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLR 642
Query: 807 SVATVLRWGRCVYTNIQKFIQFQLTVNV 834
V ++ R + I++ I + L NV
Sbjct: 643 DVVAAIQLSRKTMSKIKQNIFWALIYNV 670
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 69/141 (48%), Gaps = 4/141 (2%)
Query: 209 VSAFSNFRQARQFDKLSKISNNIKVEVVREARRLQISIFDLVVGDIVFLKIGDQIPADGL 268
+ A + R KL + V V+R+ + + + + ++ VGDIV ++ G++IP DG+
Sbjct: 190 LEARAKSRTGEAIKKLVGLQAKTAV-VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGV 248
Query: 269 FLDGHSLQVDESSMTGESDHVEVDSTNNPFLFSGSKVADGYAQMLVVSVGMNTAWGEMMS 328
++G S VDES ++GE V V + +F + G ++ VG T +++
Sbjct: 249 VVEGES-YVDESMISGEP--VPVLKSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVK 305
Query: 329 SISSDSNERTPLQARLDKLTS 349
+ + P+Q DK+ +
Sbjct: 306 LVEDAMGSKPPIQRLADKVVA 326
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 97/197 (49%), Gaps = 44/197 (22%)
Query: 637 TAYNNDVK-ARQRLKEEGLTLL---------GIVGIKDPCRPGVQKAVEACQSAGVEIKM 686
A +N+V+ A ++L+ E T + GI+ + D + + AV+ + G+++ M
Sbjct: 125 VAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGM 184
Query: 687 ITGDNVFTAKAIATECGILRLDQQXXXXXXXXXXXFRNYTDEERIQKVDKIRVMARSSPF 746
ITGDN +A+AI+ E L LD V+A P
Sbjct: 185 ITGDNWRSAEAISRE---LNLDL-----------------------------VIAEVLPH 212
Query: 747 DKLLMVQCLKKKGHVVAVTGDGTNDAPALKEADVGLSMGIQGTEVAKESSDIVILDDDFT 806
K V+ L+ K VVA GDG NDAPAL +AD+G+++G G++VA ES DIV++ DD
Sbjct: 213 QKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLR 270
Query: 807 SVATVLRWGRCVYTNIQ 823
V ++ R + I+
Sbjct: 271 DVVAAIQLSRKTMSKIK 287
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 97/197 (49%), Gaps = 44/197 (22%)
Query: 637 TAYNNDVK-ARQRLKEEGLTLL---------GIVGIKDPCRPGVQKAVEACQSAGVEIKM 686
A +N+V+ A ++L+ E T + GI+ + D + + AV+ + G+++ M
Sbjct: 125 VAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGM 184
Query: 687 ITGDNVFTAKAIATECGILRLDQQXXXXXXXXXXXFRNYTDEERIQKVDKIRVMARSSPF 746
ITGDN +A+AI+ E L LD V+A P
Sbjct: 185 ITGDNWRSAEAISRE---LNLDL-----------------------------VIAEVLPH 212
Query: 747 DKLLMVQCLKKKGHVVAVTGDGTNDAPALKEADVGLSMGIQGTEVAKESSDIVILDDDFT 806
K V+ L+ K VVA GDG NDAPAL +AD+G+++G G++VA ES DIV++ DD
Sbjct: 213 QKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLR 270
Query: 807 SVATVLRWGRCVYTNIQ 823
V ++ R + I+
Sbjct: 271 DVVAAIQLSRKTMSKIK 287
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 93/189 (49%), Gaps = 44/189 (23%)
Query: 638 AYNNDVK-ARQRLKEEGLTLL---------GIVGIKDPCRPGVQKAVEACQSAGVEIKMI 687
A +N+V+ A ++L+ E T + GI+ + D + + AV+ + G+++ I
Sbjct: 106 AVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRXGIKVGXI 165
Query: 688 TGDNVFTAKAIATECGILRLDQQXXXXXXXXXXXFRNYTDEERIQKVDKIRVMARSSPFD 747
TGDN +A+AI+ E L LD V+A P
Sbjct: 166 TGDNWRSAEAISRE---LNLDL-----------------------------VIAEVLPHQ 193
Query: 748 KLLMVQCLKKKGHVVAVTGDGTNDAPALKEADVGLSMGIQGTEVAKESSDIVILDDDFTS 807
K V+ L+ K VVA GDG NDAPAL +AD+G+++G G++VA ES DIV++ DD
Sbjct: 194 KSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRD 251
Query: 808 VATVLRWGR 816
V ++ R
Sbjct: 252 VVAAIQLSR 260
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 70/152 (46%), Gaps = 46/152 (30%)
Query: 662 IKDPCRPGVQKAVEACQSAGVEIKMITGDNVFTAKAIATECGILRLDQQXXXXXXXXXXX 721
+K+ +P VQ+ + G+++ ITGDN +A+AI+ E L LD
Sbjct: 23 LKESAKPAVQE----LKRXGIKVGXITGDNWRSAEAISRE---LNLD------------- 62
Query: 722 FRNYTDEERIQKVDKIRVMARSSPFDKLLMVQCLKKKGHVVAVTGDGTNDAPALKEADVG 781
V+A P K V+ L+ K VVA GDG NDAPAL +AD+G
Sbjct: 63 ----------------LVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLG 105
Query: 782 LSMGIQGTEVAKESSDIVILDDDFTSVATVLR 813
+++G S DIV++ DD V ++
Sbjct: 106 IAVG---------SGDIVLIRDDLRDVVAAIQ 128
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 235 VVREARRLQISIFDLVVGDIVFLKIGDQIPADGLFLDGHSLQVDESSMTGE 285
V+R+ + + + + ++ VGDIV ++ G++IP DG+ ++G S VDES ++GE
Sbjct: 16 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGE 65
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 75/152 (49%), Gaps = 33/152 (21%)
Query: 662 IKDPCRPGVQKAVEACQSAGVEIKMITGDNVFTAKAIATECGILRLDQQXXXXXXXXXXX 721
I D RP ++ +E ++ G++I +++GD K ++ E I
Sbjct: 133 ISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI----------------- 175
Query: 722 FRNYTDEERIQKVDKIRVMARSSPFDKLLMVQCLKKKGHVVAVTGDGTNDAPALKEADVG 781
+ Y + SP DK+ +++ LK+ G+ V + GDG NDA AL ADV
Sbjct: 176 -QEY--------------YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVS 220
Query: 782 LSMGIQGTEVAKESSDIVILDDDFTSVATVLR 813
++MG G +++K +DI+++ +D ++ +++
Sbjct: 221 VAMG-NGVDISKNVADIILVSNDIGTLLGLIK 251
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 75/152 (49%), Gaps = 33/152 (21%)
Query: 662 IKDPCRPGVQKAVEACQSAGVEIKMITGDNVFTAKAIATECGILRLDQQXXXXXXXXXXX 721
I D RP ++ +E ++ G++I +++GD K ++ E I
Sbjct: 133 ISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI----------------- 175
Query: 722 FRNYTDEERIQKVDKIRVMARSSPFDKLLMVQCLKKKGHVVAVTGDGTNDAPALKEADVG 781
+ Y + SP DK+ +++ LK+ G+ V + GDG NDA AL ADV
Sbjct: 176 -QEY--------------YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVS 220
Query: 782 LSMGIQGTEVAKESSDIVILDDDFTSVATVLR 813
++MG G +++K +DI+++ +D ++ +++
Sbjct: 221 VAMG-NGVDISKNVADIILVSNDIGTLLGLIK 251
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 75/152 (49%), Gaps = 33/152 (21%)
Query: 662 IKDPCRPGVQKAVEACQSAGVEIKMITGDNVFTAKAIATECGILRLDQQXXXXXXXXXXX 721
I D RP ++ +E ++ G++I +++GD K ++ E I
Sbjct: 133 ISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI----------------- 175
Query: 722 FRNYTDEERIQKVDKIRVMARSSPFDKLLMVQCLKKKGHVVAVTGDGTNDAPALKEADVG 781
+ Y + SP DK+ +++ LK+ G+ V + GDG NDA AL ADV
Sbjct: 176 -QEY--------------YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVS 220
Query: 782 LSMGIQGTEVAKESSDIVILDDDFTSVATVLR 813
++MG G +++K +DI+++ +D ++ +++
Sbjct: 221 VAMG-NGVDISKNVADIILVSNDIGTLLGLIK 251
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 252 GDIVFLKIGDQIPADGLFLDGHSLQVDESSMTGESDHVEVDSTNNPFLFSGSKVADGYAQ 311
GDI+ + G + P DG ++GHS+ VDES +TGE+ + V + +GS +G
Sbjct: 45 GDIIKVVPGGKFPVDGRVIEGHSM-VDESLITGEA--MPVAKKPGSTVIAGSINQNGSLL 101
Query: 312 MLVVSVGMNTAWGEMM 327
+ VG +T +++
Sbjct: 102 ICATHVGADTTLSQIV 117
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 17/92 (18%)
Query: 736 KIRVMARSSPF---------DKLLMVQCLKK-----KGHVVAVTGDGTNDAPALKEADVG 781
KI V RS P+ DK L + L + + V+A+ GDG ND +K A +G
Sbjct: 178 KINVF-RSEPYFLELVPQGIDKALSLSVLLENIGMTREEVIAI-GDGYNDLSMIKFAGMG 235
Query: 782 LSMGIQGTEVAKESSDIVILDDDFTSVATVLR 813
++MG E K+++D + L +D VA +
Sbjct: 236 VAMG-NAQEPVKKAADYITLTNDEDGVAEAIE 266
>pdb|2VOY|H Chain H, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 48
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 414 PEGLPLAVTLTLAYSMKRMMTDQAMVRKL 442
PEGLP +T LA +RM A+VR L
Sbjct: 20 PEGLPAVITTCLALGTRRMAKKNAIVRSL 48
>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
pdb|4B1B|B Chain B, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
Length = 542
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 16/115 (13%)
Query: 223 KLSKISNNIKVEVVREARRLQISIFDLVVGDIVFLKIGDQIPADGLFLDGHSLQVDESSM 282
KL+K+ + I VE + L D V IG + DGL L+ ++ V++S+
Sbjct: 288 KLTKMDDKILVEFSDKTSELY---------DTVLYAIGRKGDIDGLNLESLNMNVNKSNN 338
Query: 283 TGESDHVEVDSTNNPFLFSGSKVADGYAQMLVVSVGMNTAWGEMMS-SISSDSNE 336
+DH+ TN P +F+ VA+ ++ V++ GE+++ + DS+E
Sbjct: 339 KIIADHLSC--TNIPSIFAVGDVAENVPELAPVAI----KAGEILARRLFKDSDE 387
>pdb|1NF2|A Chain A, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
pdb|1NF2|B Chain B, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
pdb|1NF2|C Chain C, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
Length = 268
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 758 KGHVVAVTGDGTNDAPALKEADVGLSMGIQGTEVAKESSDIVILDDDFTSVATVL 812
K + V GD ND +EA + ++M E KE+SDIV L ++ + V+ VL
Sbjct: 205 KKEEIVVFGDNENDLFMFEEAGLRVAME-NAIEKVKEASDIVTLTNNDSGVSYVL 258
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 762 VAVTGDGTNDAPALKEADVGLSMGIQGTEVAKESSDIV 799
+ GDG ND P LK A +G++MG +E + +D V
Sbjct: 213 IMACGDGGNDIPMLKAAGIGVAMG-NASEKVQSVADFV 249
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 766 GDGTNDAPALKEADVGLSMGIQGTEVAKESSDIVI--LDDDFTSVA 809
GDG ND L+ A +G++MG Q E K ++D V +D+D S A
Sbjct: 210 GDGGNDISMLRHAAIGVAMG-QAKEDVKAAADYVTAPIDEDGISKA 254
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 766 GDGTNDAPALKEADVGLSMGIQGTEVAKESSDIVI--LDDDFTSVA 809
GDG ND L+ A +G++MG Q E K ++D V +D+D S A
Sbjct: 210 GDGGNDISMLRHAAIGVAMG-QAKEDVKAAADYVTAPIDEDGISKA 254
>pdb|2VOY|K Chain K, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 32
Score = 30.8 bits (68), Expect = 4.5, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 815 GRCVYTNIQKFIQFQLTVNVAALVINFIAA 844
GR +Y N+++FI++ ++ NV +V F+ A
Sbjct: 2 GRAIYNNMKQFIRYLISSNVGEVVCIFLTA 31
>pdb|2HO4|A Chain A, Crystal Structure Of Protein From Mouse Mm.236127
pdb|2HO4|B Chain B, Crystal Structure Of Protein From Mouse Mm.236127
Length = 259
Score = 30.0 bits (66), Expect = 6.8, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 645 ARQRLKEEGLTLLGIVGIKDPCRPGVQKAVEACQSAGVEIKMITGDNVFTAK 696
AR+ LK + L G + I+D PG Q+A++ ++ V ++ +T T K
Sbjct: 3 ARRALKAVLVDLNGTLHIEDAAVPGAQEALKRLRATSVXVRFVTNTTKETKK 54
>pdb|3NIW|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Thetaiotaomicron
Length = 279
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 17/92 (18%)
Query: 736 KIRVMARSSPF---------DKLLMVQCLKK-----KGHVVAVTGDGTNDAPALKEADVG 781
KI V RS P+ DK L + L + + V+A+ GDG ND +K A G
Sbjct: 178 KINVF-RSEPYFLELVPQGIDKALSLSVLLENIGXTREEVIAI-GDGYNDLSXIKFAGXG 235
Query: 782 LSMGIQGTEVAKESSDIVILDDDFTSVATVLR 813
++ G E K+++D + L +D VA +
Sbjct: 236 VAXG-NAQEPVKKAADYITLTNDEDGVAEAIE 266
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,048,256
Number of Sequences: 62578
Number of extensions: 1106238
Number of successful extensions: 2517
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2404
Number of HSP's gapped (non-prelim): 80
length of query: 1044
length of database: 14,973,337
effective HSP length: 109
effective length of query: 935
effective length of database: 8,152,335
effective search space: 7622433225
effective search space used: 7622433225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)